Citrus Sinensis ID: 040058

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320------
Protein Sequence
MGAYSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP
Secondary Structure (PSIPRED)
cccccccccccccccccccccEEcccccccEEEccccccccccccccccccEEEccccccccHHccccEEEEEEccccEEEEccccccccHHHHHccccccccccccccccEEEEEEcccHHHHHHHHHccccEEEEccccHHHHHHHHHHHccccccccccEEEEccccccccccccccccccccEEEEEccccccccccccEEEEccEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccEEEEcccccccHHHHHHHHHHHcccEEEcHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
cccEEcHHccccccEEEEEEEEEcccccccEEEccEEEEcccccccccccEEEEccccEEEccHHccEEEEEEEccHEEEEccccccccHHHccccccccccccccccccHHHHHHccHHHHHHHHHHHHHHHEEEEcHcHHHHHHHHHHHHcccccccccEEEEcccccccccccccEccccccEEEEEEccccccccccccEEEEEEEEEEcccccccccccHHHHcccccccccHHHHHHHHHHHHHHHHHHccHHHHHHHHcccEEEEEEEEcccccccccHHHHHHHHHHHHHcccEEEcHHHHHHHHHHHHcccHHcccc
Coil and Loop (DISEMBL)
mgaysckecvgktKFVIKRKceqslscahttvrdsrcifcsqamndsfgLSFDYMlrglryseQEERKLQLVLNLDHtllhcrnikslssGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIaredfngkdrknpdlvrgqergivilddtesvwsdHTENLIVLGKYVyfrdkelngdhksysetltdeseNEEALANVLRVLKTIHRLFFdsvcgdvrtylpkvrsefsrDVLYFSAIFRDCLWAEQEEKFLVQEKKflvhprwiDAYYFLWrrrpeddylp
Flexible Loop (DISEMBL)
mgaysckecvgktkfvikrkceqslscahttvrdSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIiaredfngkdrknpdlvrgqergivilddtesvwsdHTENLIVLGKYVYFRDKELNGDHKSYsetltdesenEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKvrsefsrdVLYFSAIFRDCLWAEQEEKFLVqekkflvhprwIDAYYFLWRRRPEDDYLP
Low Complexity Region (SEG)
MGAYSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP
Disordered region (IsUnstruct)
***YSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN********LVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKEL*******************ALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRR********
Disordered Region (DISOPRED)
*GAYSC*ECVG*********CEQSLSCAHTTVRDSRCIFCSQAMNDSFG*********************LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNG*****************ALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPE***L*
Disordered Region (DISEMBL)
MGAYSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKS************EALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP
Disordered Region (DISPRO)
*GAYSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKS**********NEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPE*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGAYSCKECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	326	2.2.26 [Sep-21-2011]
Q00IB6	440	RNA polymerase II C-termi	yes	no	0.911	0.675	0.365	7e-51
Q8LL04	1241	RNA polymerase II C-termi	no	no	0.785	0.206	0.302	2e-20
Q8SV03	411	RNA polymerase II subunit	yes	no	0.426	0.338	0.370	6e-14
Q03254	732	RNA polymerase II subunit	yes	no	0.588	0.262	0.253	4e-10
Q9Y5B0	961	RNA polymerase II subunit	no	no	0.426	0.144	0.326	6e-10
Q7TSG2	960	RNA polymerase II subunit	yes	no	0.429	0.145	0.326	7e-10
Q9P376	723	RNA polymerase II subunit	yes	no	0.420	0.189	0.244	4e-08
Q05D32	466	CTD small phosphatase-lik	no	no	0.260	0.182	0.354	7e-05
Q8BG15	465	CTD small phosphatase-lik	no	no	0.260	0.182	0.354	9e-05
Q801R4	466	CTD small phosphatase-lik	N/A	no	0.269	0.188	0.343	9e-05

>sp|Q00IB6|CPL4_ARATH RNA polymerase II C-terminal domain phosphatase-like 4 OS=Arabidopsis thaliana GN=CPL4 PE=1 SV=1

 Score =  201 bits (510), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 189/361 (52%), Gaps = 64/361 (17%)

Query: 27  CAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSE--------------QEERKLQLV 72
           C H     + C  C Q + ++ G+SF Y+ + +R +E              Q +RKL LV
Sbjct: 68  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126

Query: 73  LNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-------GSLFQMA-NDKLVKLRPFVRTF 124
           L+LDHTLL+   ++ L   E+YLK   HS         GSLF +     + KLRPFV +F
Sbjct: 127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCNVSGGSLFLLEFMQMMTKLRPFVHSF 186

Query: 125 LEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQE 184
           L++AS +  +Y+ TM  R YA    KLLD   +YF  R+I+R+D   +  K+ D+V GQE
Sbjct: 187 LKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQE 246

Query: 185 RGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH--KSYSETLTDESENEEALANV 242
             ++ILDDTE+ W  H +NLIV+ +Y +F       DH  KS SE  +DESE + ALA V
Sbjct: 247 SAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATV 306

Query: 243 LRVLKTIHRLFFDSV-----CGDVRTYLPKVRSEFSRDV-LYFSAIFRD-------CLWA 289
           L+VLK  H LFF++V       DVR  L +VR E  +   + FS +F          LW 
Sbjct: 307 LKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWK 366

Query: 290 EQEE--------------------------KFLVQEKKFLVHPRWIDAYYFLWRRRPEDD 323
             EE                          ++ V+EKK++VH  WIDA  +LW ++PE++
Sbjct: 367 MAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEEN 426

Query: 324 Y 324
           +
Sbjct: 427 F 427

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Required for normal plant growth.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 1EC: .EC: 3EC: .EC: 1EC: 6

>sp|Q8LL04|CPL3_ARATH RNA polymerase II C-terminal domain phosphatase-like 3 OS=Arabidopsis thaliana GN=CPL3 PE=1 SV=2

 Score = 99.8 bits (247), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/314 (30%), Positives = 141/314 (44%), Gaps = 58/314 (18%)

Query: 67   RKLQLVLNLDHTLLHCRNIKSLSS-GEKYLKKQIHS----FIGSLFQMANDKL-VKLRPF 120
            +KL LVL++DHTLL+      + S  E+ L+K+           LF+  +  +  KLRP 
Sbjct: 926  QKLSLVLDIDHTLLNSAKFNEVESRHEEILRKKEEQDREKPYRHLFRFLHMGMWTKLRPG 985

Query: 121  VRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDR------ 174
            +  FLE+AS L +++L TM  + YA    KLLD     F+ R+I++ D            
Sbjct: 986  IWNFLEKASKLYELHLYTMGNKLYATEMAKLLDPKGVLFNGRVISKGDDGDPLDGDERVP 1045

Query: 175  KNPDL--VRGQERGIVILDDTESVWSDHTENLIVLGKYVYF----RDKELNGDHKSYSET 228
            K+ DL  V G E  +VI+DD+  VW  H  NLI + +Y+YF    R   L G   S  E 
Sbjct: 1046 KSKDLEGVMGMESSVVIIDDSVRVWPQHKMNLIAVERYLYFPCSRRQFGLLG--PSLLEL 1103

Query: 229  LTDESENEEALANVLRVLKTIHRLFF-----------DSVCGDVRTYLPKVRSEFSRDVL 277
              DE   E  LA+ L V++ IH+ FF           + +  + R  L   R  FSR + 
Sbjct: 1104 DRDEVPEEGTLASSLAVIEKIHQNFFSHTSLDEVDVRNILASEQRKILAGCRIVFSRIIP 1163

Query: 278  YFSA-IFRDCLWAEQEE--------------------------KFLVQEKKFLVHPRWID 310
               A      LW   E+                           + +   +F+VHP W++
Sbjct: 1164 VGEAKPHLHPLWQTAEQFGAVCTTQVDEHVTHVVTNSLGTDKVNWALTRGRFVVHPGWVE 1223

Query: 311  AYYFLWRRRPEDDY 324
            A  FL++R  E+ Y
Sbjct: 1224 ASAFLYQRANENLY 1237

Processively dephosphorylates 'Ser-2' and/or 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II (By similarity). Negative regulator of stress gene transcription involved in abscisic acid (ABA) mediated signaling pathway and cold resistance.

Arabidopsis thaliana (taxid: 3702)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q8SV03|FCP1_ENCCU RNA polymerase II subunit A C-terminal domain phosphatase OS=Encephalitozoon cuniculi (strain GB-M1) GN=FCP1 PE=1 SV=1

 Score = 78.6 bits (192), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 57/154 (37%), Positives = 79/154 (51%), Gaps = 15/154 (9%)

Query: 68  KLQLVLNLDHTLLHCR-NIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLE 126
           KL LVL+LD T+LH      SL    K++  +                VKLRP +   L 
Sbjct: 60  KLILVLDLDQTVLHTTYGTSSLEGTVKFVIDRCRY------------CVKLRPNLDYMLR 107

Query: 127 QASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKN-PDLVRGQER 185
           + S L +I++ TM TR YAE  V+++D   KYF  RII R++  G   K    L     R
Sbjct: 108 RISKLYEIHVYTMGTRAYAERIVEIIDPSGKYFDDRIITRDENQGVLVKRLSRLFPHDHR 167

Query: 186 GIVILDDTESVWSDHTENLIVLGKYVYFRDKELN 219
            IVILDD   VW D+ ENL+++  + YF   ++N
Sbjct: 168 NIVILDDRPDVW-DYCENLVLIRPFWYFNRVDIN 200

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Encephalitozoon cuniculi (strain GB-M1) (taxid: 284813)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q03254|FCP1_YEAST RNA polymerase II subunit A C-terminal domain phosphatase OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=FCP1 PE=1 SV=1

 Score = 65.9 bits (159), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 60/237 (25%), Positives = 109/237 (45%), Gaps = 45/237 (18%)

Query: 21  CEQSLSCAHTTVRDSRCIFCSQAMN-DSF-GLSFDYMLR-GLRYSEQE------------ 65
           CE    C H  V    C  C + ++ D+F G+  D +    L+ SE E            
Sbjct: 110 CEIKRPCNHDIVYGGLCTQCGKEVSADAFDGVPLDVVGDVDLQISETEAIRTGKALKEHL 169

Query: 66  --ERKLQLVLNLDHTLLHC---------------------RNIKSLSSGEKYLKKQIH-S 101
             ++KL LV++LD T++HC                     R++KS +  E+ +   ++ +
Sbjct: 170 RRDKKLILVVDLDQTIIHCGVDPTIAEWKNDPNNPNFETLRDVKSFTLDEELVLPLMYMN 229

Query: 102 FIGSLFQMANDK----LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSK 157
             GS+ +    +     VK+RP ++ F  + + L ++++ TM+TR YA    K++D   +
Sbjct: 230 DDGSMLRPPPVRKCWYYVKVRPGLKEFFAKVAPLFEMHIYTMATRAYALQIAKIVDPTGE 289

Query: 158 YFSSRIIAREDFNGKDRKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
            F  RI++R++      K+   L    +  +V++DD   VW+    NLI +  Y +F
Sbjct: 290 LFGDRILSRDENGSLTTKSLAKLFPTDQSMVVVIDDRGDVWN-WCPNLIKVVPYNFF 345

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit (RPB1). This promotes the activity of RNA polymerase II.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9Y5B0|CTDP1_HUMAN RNA polymerase II subunit A C-terminal domain phosphatase OS=Homo sapiens GN=CTDP1 PE=1 SV=3

 Score = 65.5 bits (158), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 50/153 (32%), Positives = 80/153 (52%), Gaps = 14/153 (9%)

Query: 67  RKLQLVLNLDHTLLHC--RNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTF 124
           RKL L+++LD TL+H   ++ + +S+     K   H  +G    M +    +LRP  + F
Sbjct: 181 RKLVLMVDLDQTLIHTTEQHCQQMSN-----KGIFHFQLGRGEPMLH---TRLRPHCKDF 232

Query: 125 LEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE---DFNGKDRKNPDLVR 181
           LE+ + L ++++ T  +R YA      LD + K FS RI++R+   D   K     +L  
Sbjct: 233 LEKIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFP 292

Query: 182 GQERGIVILDDTESVWSDHTENLIVLGKYVYFR 214
             +  + I+DD E VW     NLI + KYVYF+
Sbjct: 293 CGDSMVCIIDDREDVWK-FAPNLITVKKYVYFQ 324

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q7TSG2|CTDP1_MOUSE RNA polymerase II subunit A C-terminal domain phosphatase OS=Mus musculus GN=Ctdp1 PE=1 SV=1

 Score = 65.1 bits (157), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/150 (32%), Positives = 74/150 (49%), Gaps = 10/150 (6%)

Query: 67  RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLE 126
           RKL L+++LD TL+H           K +    H  +G    M +    +LRP  + FLE
Sbjct: 181 RKLVLMVDLDQTLIHTTEQHCPQMSNKGI---FHFQLGRGEPMLH---TRLRPHCKDFLE 234

Query: 127 QASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE---DFNGKDRKNPDLVRGQ 183
           + + L ++++ T  +R YA      LD + K FS RI++R+   D   K     +L    
Sbjct: 235 KIAKLYELHVFTFGSRLYAHTIAGFLDPEKKLFSHRILSRDECIDPFSKTGNLRNLFPCG 294

Query: 184 ERGIVILDDTESVWSDHTENLIVLGKYVYF 213
           +  + I+DD E VW     NLI + KYVYF
Sbjct: 295 DSMVCIIDDREDVWK-FAPNLITVKKYVYF 323

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q9P376|FCP1_SCHPO RNA polymerase II subunit A C-terminal domain phosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=fcp1 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 82/172 (47%), Gaps = 35/172 (20%)

Query: 64  QEERKLQLVLNLDHTLLHC---------------------RNIKSLSSGEKYLKKQIHSF 102
           ++E++L L+++LD T++H                      R+++S +     L++    +
Sbjct: 160 RQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFN-----LQEGPSGY 214

Query: 103 IGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSR 162
               +       +K RP +  FL++ S L ++++ TM T+ YA+   K++D   K F  R
Sbjct: 215 TSCYY-------IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDR 267

Query: 163 IIAREDFNGKDRKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
           +++R+D     +K+   L       +V++DD   VW D   NLI +  Y +F
Sbjct: 268 VLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 318

Processively dephosphorylates 'Ser-2' and 'Ser-5' of the heptad repeats YSPTSPS in the C-terminal domain of the largest RNA polymerase II subunit. This promotes the activity of RNA polymerase II.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: 1

EC: 6

>sp|Q05D32|CTSL2_HUMAN CTD small phosphatase-like protein 2 OS=Homo sapiens GN=CTDSPL2 PE=1 SV=2

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 71  LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS 130
           LVL+LD TL+HC    SL+  E         F   ++Q+     V+LRPF R FLE+ S 
Sbjct: 290 LVLDLDETLVHC----SLNELEDAALTFPVLFQDVIYQV----YVRLRPFFREFLERMSQ 341

Query: 131 LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI 163
           + +I L T S + YA+  + +LD   +    R+
Sbjct: 342 MYEIILFTASKKVYADKLLNILDPKKQLVRHRL 374

Probable phosphatase.

Homo sapiens (taxid: 9606)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q8BG15|CTSL2_MOUSE CTD small phosphatase-like protein 2 OS=Mus musculus GN=Ctdspl2 PE=1 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/93 (35%), Positives = 49/93 (52%), Gaps = 8/93 (8%)

Query: 71  LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS 130
           LVL+LD TL+HC    SL+  E         F   ++Q+     V+LRPF R FLE+ S 
Sbjct: 289 LVLDLDETLVHC----SLNELEDAALTFPVLFQDVIYQV----YVRLRPFFREFLERMSQ 340

Query: 131 LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI 163
           + +I L T S + YA+  + +LD   +    R+
Sbjct: 341 MYEIILFTASKKVYADKLLNILDPKKQLVRHRL 373

Probable phosphatase.

Mus musculus (taxid: 10090)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

>sp|Q801R4|CTL2A_XENLA CTD small phosphatase-like protein 2-A OS=Xenopus laevis GN=ctdspl2-a PE=2 SV=1

 Score = 48.1 bits (113), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 33/96 (34%), Positives = 50/96 (52%), Gaps = 8/96 (8%)

Query: 68  KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQ 127
           +  LVL+LD TL+HC    SL+  E         F   ++Q+     V+LRPF R FLE+
Sbjct: 287 EFSLVLDLDETLVHC----SLNELEDAALTFPVLFQDVIYQV----YVRLRPFFREFLER 338

Query: 128 ASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI 163
            S + +I L T S + YA+  + +LD   +    R+
Sbjct: 339 MSQIYEIILFTASKKVYADKLLNILDPKKRLVRHRL 374

Probable phosphatase.

Xenopus laevis (taxid: 8355)

EC: 3

EC: .

EC: 1

EC: .

EC: 3

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
255570505	478	RNA polymerase II ctd phosphatase, putat	0.920	0.627	0.355	6e-52
449447765	452	PREDICTED: RNA polymerase II C-terminal	0.914	0.659	0.354	1e-51
356564913	442	PREDICTED: RNA polymerase II C-terminal	0.981	0.723	0.352	3e-51
356498756	428	PREDICTED: RNA polymerase II C-terminal	0.969	0.738	0.350	7e-50
9758369	1065	unnamed protein product [Arabidopsis tha	0.911	0.278	0.365	3e-49
145334837	440	RNA polymerase II C-terminal domain phos	0.911	0.675	0.365	5e-49
449532013	340	PREDICTED: LOW QUALITY PROTEIN: RNA poly	0.788	0.755	0.379	6e-46
326518250	488	predicted protein [Hordeum vulgare subsp	0.960	0.641	0.349	7e-46
242093742	558	hypothetical protein SORBIDRAFT_10g02558	0.926	0.541	0.342	2e-45
413945235	533	CPL3 [Zea mays]	0.923	0.564	0.338	3e-45

>gi|255570505|ref|XP_002526210.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis] gi|223534449|gb|EEF36151.1| RNA polymerase II ctd phosphatase, putative [Ricinus communis]

 Score =  210 bits (535), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 128/360 (35%), Positives = 202/360 (56%), Gaps = 60/360 (16%)

Query: 25  LSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQE--------------ERKLQ 70
           ++C H       CI C + + +  G++F Y+ +GLR +  E               RKL 
Sbjct: 109 VACTHPGSFGDMCILCGERLIEETGVTFGYIHKGLRLANDEIVRLRNTDMKNLLRHRKLY 168

Query: 71  LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI----GSLFQMA-NDKLVKLRPFVRTFL 125
           LVL+LDHTLL+   +  L++ E+YLK QI S      GSLF +     + KLRPF+RTFL
Sbjct: 169 LVLDLDHTLLNSTQLMHLTAEEEYLKSQIDSMQDVSNGSLFMVDFMHMMTKLRPFIRTFL 228

Query: 126 EQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQER 185
           ++AS + ++Y+ TM  R YA    K LD   +YF++R+I+R+D   + +K  D+V GQE 
Sbjct: 229 KEASQMFEMYIYTMGDRAYALEMAKFLDPGREYFNARVISRDDGTQRHQKGLDIVLGQES 288

Query: 186 GIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSYSETLTDESENEEALANVL 243
            ++ILDDTE+ W+ H +NLI++ +Y +F    ++   + KS S+  +DE+E++ ALA+VL
Sbjct: 289 AVLILDDTENAWTKHKDNLILMERYHFFASSCRQFGFECKSLSQLKSDENESDGALASVL 348

Query: 244 RVLKTIHRLFF----DSVCG-DVRTYLPKVRSEFSRDV-LYFSAIF-------RDCLW-- 288
           +VL+ IH +FF    D++ G DVR  L  VR +  +   + FS +F          LW  
Sbjct: 349 KVLRRIHHIFFDELEDAIDGRDVRQVLSTVRKDVLKGCKIVFSRVFPTQFQADNHHLWKM 408

Query: 289 AEQ------------------------EEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDY 324
           AEQ                        + ++ ++  KFLVHPRWI+A  ++W+R+PE+++
Sbjct: 409 AEQLGATCSREVDPSVTHVVSAEAGTEKSRWALKNDKFLVHPRWIEATNYMWQRQPEENF 468

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449447765|ref|XP_004141638.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Cucumis sativus]

 Score =  209 bits (532), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 127/358 (35%), Positives = 195/358 (54%), Gaps = 60/358 (16%)

Query: 27  CAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQE--------------ERKLQLV 72
           C+H     + CI C Q +++  G++F Y+ + LR +  E               +KL LV
Sbjct: 82  CSHPGSFGNMCIICGQRLDEESGVTFGYIHKELRLNNDEINRMRNKEMKELLQRKKLILV 141

Query: 73  LNLDHTLLHCRNIKSLSSGEKYLKKQIHSF----IGSLFQMAN-DKLVKLRPFVRTFLEQ 127
           L+LDHTLL+   ++ L+  E+YL+ Q  S      GSLF + +   + KLRPFV +FL++
Sbjct: 142 LDLDHTLLNSTELRYLTVEEEYLRSQTDSLDDVTKGSLFLLNSVHTMTKLRPFVHSFLKE 201

Query: 128 ASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGI 187
           AS L ++Y+ TM  R YA    KLLD   +YFSS++I+R+D   K +K  D+V G+E  +
Sbjct: 202 ASKLFEMYIYTMGERRYAFEMAKLLDPKKEYFSSKVISRDDGTQKHQKGLDVVLGKESAV 261

Query: 188 VILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSYSETLTDESENEEALANVLRV 245
           +ILDDTE+ W+ H ENLI++ +Y +F    ++   + KS SE   DESE + AL  +L+V
Sbjct: 262 LILDDTENAWTKHKENLILMERYHFFASSCRQFGFNCKSLSELKNDESETDGALTTILKV 321

Query: 246 LKTIHRLFFDSVCG-----DVRTYLPKVRSEFSRDV-LYFSAIFRDCLWAE--------- 290
           LK +H +FF+ V G     DVR  L  VR+E      + FS +F     AE         
Sbjct: 322 LKQVHHMFFNEVSGDLVDRDVRQVLKTVRAEVLEGCKVVFSRVFPTKFQAENHQLWKMVE 381

Query: 291 ------------------------QEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDY 324
                                   ++ ++ ++EKKFLVHPRWI+A  + W+R+ E+++
Sbjct: 382 QLGGTCSTELDQSVTHVVATDAGTEKSRWALKEKKFLVHPRWIEASNYFWKRQMEENF 439

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356564913|ref|XP_003550691.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  208 bits (529), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/380 (35%), Positives = 206/380 (54%), Gaps = 60/380 (15%)

Query: 5   SCKECVGKT-KFVIKRKCEQS----LSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGL 59
           S +E  G T + ++KR  E S    + C H     + CI C Q ++   G++F Y+ +GL
Sbjct: 57  SIEETEGSTSEGIVKRSLEASSEVDVCCTHPGSFGNMCIRCGQKLDGESGVTFGYIHKGL 116

Query: 60  RYSEQE--------------ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-- 103
           R  ++E               +KL LVL+LDHTLL+  ++  L+S E +L  Q  S    
Sbjct: 117 RLHDEEISRLRNTDMKSLLGRKKLYLVLDLDHTLLNSTHLAQLTSEELHLLNQTDSLTNV 176

Query: 104 --GSLFQMAN-DKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFS 160
             GSLF++ + + + KLRPFVR FL++AS + ++Y+ TM  R YA    KLLD   +YF+
Sbjct: 177 SKGSLFKLEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFN 236

Query: 161 SRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KEL 218
           +++I+R+D   K +K  D+V GQE  ++ILDDTE  W  H +NLI++ +Y +F    ++ 
Sbjct: 237 AKVISRDDGTQKHQKGLDVVLGQESAVIILDDTEHAWMKHKDNLILMERYHFFGSSCRQF 296

Query: 219 NGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCG----DVRTYLPKVRSE-FS 273
             + KS +E  +DE E + ALA +L+VLK +H +FFD        DVR  L  VR E  S
Sbjct: 297 GFNCKSLAELKSDEDETDGALAKILKVLKQVHCMFFDKQEDFDDQDVRQVLSSVRREVLS 356

Query: 274 RDVLYFSAIFRDCL-----WAEQEE------------------------KFLVQEKKFLV 304
             V+ FS I    +      AEQ                          ++ V+EKKF+V
Sbjct: 357 GCVIIFSRIVHGAIPSLRKMAEQMGATCLTEIDPSVTHVVATDAGTEKCRWAVKEKKFVV 416

Query: 305 HPRWIDAYYFLWRRRPEDDY 324
           HP WI+A  + W+++PE+++
Sbjct: 417 HPLWIEAANYFWQKQPEENF 436

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498756|ref|XP_003518215.1| PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4-like [Glycine max]

 Score =  203 bits (517), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 203/374 (54%), Gaps = 58/374 (15%)

Query: 10  VGKTKFVIKRKCEQSLS---CAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQE- 65
           + + KF    + E S S   C H     + CI C Q ++   G++F Y+ +GLR  ++E 
Sbjct: 50  IKRRKFESIEETEGSTSEGVCTHPGSFGNMCIRCGQKLDGESGVTFGYIHKGLRLHDEEI 109

Query: 66  -------------ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSF----IGSLFQ 108
                         +KL LVL+LDHTLL+  ++  L+S E +L  Q  S      GSLF+
Sbjct: 110 SRLRNTDMKSLLCRKKLYLVLDLDHTLLNSTHLAHLTSEESHLLNQTDSLRDVSKGSLFK 169

Query: 109 MAN-DKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE 167
           + + + + KLRPFVR FL++AS + ++Y+ TM  R YA    KLLD   +YF++++I+R+
Sbjct: 170 LEHMNMMTKLRPFVRPFLKEASEMFEMYIYTMGDRPYALEMAKLLDPQGEYFNAKVISRD 229

Query: 168 DFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSY 225
           D   K +K  D+V GQE  ++ILDDTE  W  H +NLI++ +Y +F    ++   + KS 
Sbjct: 230 DGTQKHQKGLDVVLGQESAVLILDDTEHAWMKHKDNLILMERYHFFGSSCRQFGFNCKSL 289

Query: 226 SETLTDESENEEALANVLRVLKTIHRLFFDSVCG----DVRTYLPKVRSE-FSRDVLYFS 280
           +E  +DE+E + ALA +L+VLK +H +FFD        DVR  L  VR E  S  V+ FS
Sbjct: 290 AELKSDENETDGALAKILKVLKQVHCMFFDKQEDFDDRDVRQMLSLVRREVLSGCVIIFS 349

Query: 281 AIFRDCL-----WAEQEE------------------------KFLVQEKKFLVHPRWIDA 311
            I    +      AEQ                          ++ V+EKKF+VHP WI+A
Sbjct: 350 RIVHGAIPSLRKMAEQMGATCLTEIDPSVTHVVATDAGTEKCRWAVKEKKFVVHPLWIEA 409

Query: 312 YYFLWRRRPEDDYL 325
             + W+++PE++++
Sbjct: 410 ANYFWQKQPEENFI 423

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|9758369|dbj|BAB08870.1| unnamed protein product [Arabidopsis thaliana]

 Score =  201 bits (512), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 189/361 (52%), Gaps = 64/361 (17%)

Query: 27   CAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSE--------------QEERKLQLV 72
            C H     + C  C Q + ++ G+SF Y+ + +R +E              Q +RKL LV
Sbjct: 693  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 751

Query: 73   LNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-------GSLFQMA-NDKLVKLRPFVRTF 124
            L+LDHTLL+   ++ L   E+YLK   HS         GSLF +     + KLRPFV +F
Sbjct: 752  LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCNVSGGSLFLLEFMQMMTKLRPFVHSF 811

Query: 125  LEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQE 184
            L++AS +  +Y+ TM  R YA    KLLD   +YF  R+I+R+D   +  K+ D+V GQE
Sbjct: 812  LKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQE 871

Query: 185  RGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH--KSYSETLTDESENEEALANV 242
              ++ILDDTE+ W  H +NLIV+ +Y +F       DH  KS SE  +DESE + ALA V
Sbjct: 872  SAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATV 931

Query: 243  LRVLKTIHRLFFDSV-----CGDVRTYLPKVRSEFSRDV-LYFSAIFRD-------CLWA 289
            L+VLK  H LFF++V       DVR  L +VR E  +   + FS +F          LW 
Sbjct: 932  LKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWK 991

Query: 290  EQEE--------------------------KFLVQEKKFLVHPRWIDAYYFLWRRRPEDD 323
              EE                          ++ V+EKK++VH  WIDA  +LW ++PE++
Sbjct: 992  MAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEEN 1051

Query: 324  Y 324
            +
Sbjct: 1052 F 1052

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|145334837|ref|NP_001078764.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana] gi|122154038|sp|Q00IB6.1|CPL4_ARATH RecName: Full=RNA polymerase II C-terminal domain phosphatase-like 4; Short=FCP-like 4; AltName: Full=Carboxyl-terminal phosphatase-like 4; Short=AtCPL4; Short=CTD phosphatase-like 4 gi|95115186|gb|ABF55959.1| carboxyl-terminal phosphatase-like 4 [Arabidopsis thaliana] gi|332009601|gb|AED96984.1| RNA polymerase II C-terminal domain phosphatase-like 4 [Arabidopsis thaliana]

 Score =  201 bits (510), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 132/361 (36%), Positives = 189/361 (52%), Gaps = 64/361 (17%)

Query: 27  CAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSE--------------QEERKLQLV 72
           C H     + C  C Q + ++ G+SF Y+ + +R +E              Q +RKL LV
Sbjct: 68  CEHPGSFGNMCFVCGQKLEET-GVSFRYIHKEMRLNEDEISRLRDSDSRFLQRQRKLYLV 126

Query: 73  LNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-------GSLFQMA-NDKLVKLRPFVRTF 124
           L+LDHTLL+   ++ L   E+YLK   HS         GSLF +     + KLRPFV +F
Sbjct: 127 LDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCNVSGGSLFLLEFMQMMTKLRPFVHSF 186

Query: 125 LEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQE 184
           L++AS +  +Y+ TM  R YA    KLLD   +YF  R+I+R+D   +  K+ D+V GQE
Sbjct: 187 LKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEKSLDVVLGQE 246

Query: 185 RGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH--KSYSETLTDESENEEALANV 242
             ++ILDDTE+ W  H +NLIV+ +Y +F       DH  KS SE  +DESE + ALA V
Sbjct: 247 SAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDESEPDGALATV 306

Query: 243 LRVLKTIHRLFFDSV-----CGDVRTYLPKVRSEFSRDV-LYFSAIFRD-------CLWA 289
           L+VLK  H LFF++V       DVR  L +VR E  +   + FS +F          LW 
Sbjct: 307 LKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVFPTKAKPEDHPLWK 366

Query: 290 EQEE--------------------------KFLVQEKKFLVHPRWIDAYYFLWRRRPEDD 323
             EE                          ++ V+EKK++VH  WIDA  +LW ++PE++
Sbjct: 367 MAEELGATCATEVDASVTHVVAMDVGTEKARWAVREKKYVVHRGWIDAANYLWMKQPEEN 426

Query: 324 Y 324
           +
Sbjct: 427 F 427

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449532013|ref|XP_004172979.1| PREDICTED: LOW QUALITY PROTEIN: RNA polymerase II C-terminal domain phosphatase-like 4-like, partial [Cucumis sativus]

 Score =  191 bits (484), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/303 (37%), Positives = 172/303 (56%), Gaps = 46/303 (15%)

Query: 68  KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSF----IGSLFQMAN-DKLVKLRPFVR 122
           KL LVL+LDHTLL+   ++ L+  E+YL+ Q  S      GSLF + +   + KLRPFV 
Sbjct: 25  KLILVLDLDHTLLNSTELRYLTVEEEYLRSQTDSLDDVTKGSLFLLNSVHTMTKLRPFVH 84

Query: 123 TFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRG 182
           +FL++AS L ++Y+ TM  R YA    KLLD   +YFSS++I+R+D   K +K  D+V G
Sbjct: 85  SFLKEASKLFEMYIYTMGERRYAFEMAKLLDPKKEYFSSKVISRDDGTQKHQKGLDVVLG 144

Query: 183 QERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSYSETLTDESENEEALA 240
           +E  ++ILDDTE+ W+ H ENLI++ +Y +F    ++   + KS SE   DESE + AL 
Sbjct: 145 KESAVLILDDTENAWTKHKENLILMERYHFFASSCRQFGFNCKSLSELKNDESETDGALT 204

Query: 241 NVLRVLKTIHRLFFDSVCG-----DVRTYLPKVRSEFSRDV-LYFSAIFRDCLWAE---- 290
            +L+VLK +H +FF+ V G     DVR  L  VR+E      + FS +F     AE    
Sbjct: 205 TILKVLKQVHHMFFNEVSGDLVDRDVRQVLKTVRAEVLEGCKVVFSRVFPTKFQAENHQL 264

Query: 291 -----------------------------QEEKFLVQEKKFLVHPRWIDAYYFLWRRRPE 321
                                        ++ ++ ++EKKFLVHPRWI+A  + W+R+ E
Sbjct: 265 WKMVEQLGGTCSTELDQSVTHVVATDAGTEKSRWALKEKKFLVHPRWIEASNYFWKRQME 324

Query: 322 DDY 324
           +++
Sbjct: 325 ENF 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|326518250|dbj|BAK07377.1| predicted protein [Hordeum vulgare subsp. vulgare]

 Score =  190 bits (483), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 134/383 (34%), Positives = 192/383 (50%), Gaps = 70/383 (18%)

Query: 7   KECVGKTKFVIKRKCEQSLSCAHTTVRDSRCIFC--SQAMNDSFGLSFDYMLRGLRYSEQ 64
           ++ +G  K    +KC       H       CI C  SQ   D  G++F Y+ +GLR    
Sbjct: 90  EDVIGSVKDAQIKKCP-----PHPGFFGGLCINCGKSQDEEDVPGVAFGYIHKGLRLGTS 144

Query: 65  E--------------ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG------ 104
           E              ERKL L+L+LDHTL++   +  +S+ E  L  Q  +         
Sbjct: 145 EMDRLRESEVKNLLRERKLVLILDLDHTLINSTRLHDISAAEMDLGIQTAASKNADDPER 204

Query: 105 SLFQMAN-DKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI 163
           SLF +     L KLRPFVR FLE+AS++ D+Y+ TM  + YA    KLLD  + YF S++
Sbjct: 205 SLFTLQGMHMLTKLRPFVRKFLEEASNMFDMYIYTMGDKAYAIEIAKLLDPGNVYFDSKV 264

Query: 164 IAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGD 221
           I+  D   + +K  D+V G ++  VI+DDTE VW  H ENLI++ +Y YF    ++    
Sbjct: 265 ISNSDCTQRHQKGLDVVLGDDKVAVIIDDTEHVWQKHKENLILMERYHYFAASCRQFGFS 324

Query: 222 HKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCG------DVRTYLPKVRSEFSRD 275
            +S SE + DE E++ ALA +L VLK IH +FFDS         DVR  + +VR E  + 
Sbjct: 325 DQSLSELMQDERESDGALATILDVLKRIHTIFFDSGVETALSSRDVRQVIKRVRQEVLQG 384

Query: 276 V-LYFSAIF-RDC------LW--AEQ------------------------EEKFLVQEKK 301
             L FS +F  DC      +W  AEQ                        + ++    KK
Sbjct: 385 CKLVFSRVFPSDCRSQDQIMWKMAEQLGAVCCSEVDPSVTHVVAVHAGTEKARWAAGNKK 444

Query: 302 FLVHPRWIDAYYFLWRRRPEDDY 324
           FL+HPRWI+A  + W R+PE+D+
Sbjct: 445 FLLHPRWIEACNYRWHRQPEEDF 467

Source: Hordeum vulgare subsp. vulgare

Species: Hordeum vulgare

Genus: Hordeum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242093742|ref|XP_002437361.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor] gi|241915584|gb|EER88728.1| hypothetical protein SORBIDRAFT_10g025580 [Sorghum bicolor]

 Score =  189 bits (479), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 125/365 (34%), Positives = 185/365 (50%), Gaps = 63/365 (17%)

Query: 23  QSLSCAHTTVRDSRCIFCSQAMNDS--FGLSFDYMLRGLRYSEQE--------------E 66
           Q  +C H       C  C +  ++    G++F Y+ +GLR    E              E
Sbjct: 103 QVEACPHPGYFGGLCFRCGKPQDEENVSGVAFGYIHKGLRLGTSEIDRLRGADLKNLLRE 162

Query: 67  RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG----SLFQM-ANDKLVKLRPFV 121
           RKL L+L+LDHTL++   ++ +SS EK L  Q  +       S+F + +   L KLRPFV
Sbjct: 163 RKLVLILDLDHTLINSTKLQDISSAEKDLGIQTAASKDDPNRSIFSLDSMQMLTKLRPFV 222

Query: 122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR 181
           R FL++AS++ ++Y+ TM  + YA    KLLD  + YF S++I+  D   + +K  D++ 
Sbjct: 223 REFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPSNIYFPSKVISNSDCTQRHQKGLDVIL 282

Query: 182 GQERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSYSETLTDESENEEAL 239
           G E   VILDDTE VW  H ENLI++ +Y +F    ++     +S SE++ DE E++ AL
Sbjct: 283 GAESVAVILDDTEYVWQKHKENLILMERYHFFASSCRQFGFGVRSLSESMQDERESDGAL 342

Query: 240 ANVLRVLKTIHRLFFDSVC------GDVRTYLPKVRSEFSRDV-LYFSAIFRD------- 285
           A VL VLK IH +FFD          DVR  +  VR E  +   + FS +F +       
Sbjct: 343 ATVLDVLKRIHSIFFDLAVETDLSSQDVRQVIKAVRKEILQGCKIVFSRVFPNNTRPQEQ 402

Query: 286 CLW--------------------------AEQEEKFLVQEKKFLVHPRWIDAYYFLWRRR 319
            LW                            ++ ++ V  KKFLVHPRWI+A  F W R+
Sbjct: 403 MLWKMAEHLGAVCSTDVDSSVTHVVTVDLGTEKARWGVANKKFLVHPRWIEAANFRWHRQ 462

Query: 320 PEDDY 324
           PE+D+
Sbjct: 463 PEEDF 467

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|413945235|gb|AFW77884.1| CPL3 [Zea mays]

 Score =  188 bits (478), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 126/372 (33%), Positives = 184/372 (49%), Gaps = 71/372 (19%)

Query: 20  KCEQSLSCAHTTVRDSRCIFCSQAMN--DSFGLSFDYMLRGLRYSEQE------------ 65
           K  Q  +C H       CI C +  +  D  G++F Y+ +GLR    E            
Sbjct: 98  KIVQVEACPHPGHFGGLCIICGKPQDEEDVSGVAFGYIHKGLRLGTSEIDRLRGADLKNL 157

Query: 66  --ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHS---------FIGSLFQMANDKL 114
             ERKL L+L+LDHTL++   ++ +SS EK L  Q  +         F   L  M    L
Sbjct: 158 LRERKLVLILDLDHTLINSTKLQDISSAEKDLGIQSAASKDDPNRSIFALDLMPM----L 213

Query: 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDR 174
            KLRPFVR FL++AS++ ++Y+ TM  + YA    KLLD  + YF S++I+  D   + +
Sbjct: 214 TKLRPFVREFLKEASNMFEMYIYTMGDKAYAIEIAKLLDPSNIYFPSKVISNSDCTQRHQ 273

Query: 175 KNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD--KELNGDHKSYSETLTDE 232
           K  D++ G E   VILDDTE VW  H ENLI++ +Y +F    ++     +S SE+L DE
Sbjct: 274 KGLDVILGAESVAVILDDTEYVWQKHKENLILMERYHFFASSCRQFGFGVRSLSESLQDE 333

Query: 233 SENEEALANVLRVLKTIHRLFFDSVCG------DVRTYLPKVRSEFSRDV-LYFSAIFRD 285
            E++ ALA VL VLK IH  FFD          D+R  +  +R E  +   + FS +F +
Sbjct: 334 RESDGALATVLDVLKRIHATFFDMAAETDLSSRDIRQVIKTLRKEILQGCKIVFSRVFPN 393

Query: 286 -------CLW--------------------------AEQEEKFLVQEKKFLVHPRWIDAY 312
                   +W                            ++ ++ +  KKFLVHPRWI+A 
Sbjct: 394 NTRPQEQMVWKMAEYLGAVCVKDVDPSVTHVVTVDLGTEKARWGLNNKKFLVHPRWIEAA 453

Query: 313 YFLWRRRPEDDY 324
            F W R+PE+D+
Sbjct: 454 NFRWHRQPEEDF 465

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	326
TAIR|locus:4010714056	440	CPL4 "C-terminal domain phosph	0.674	0.5	0.440	6.8e-49
TAIR|locus:2012943	342	AT1G20320 [Arabidopsis thalian	0.699	0.666	0.426	1.9e-44
TAIR|locus:2090467	296	AT3G17550 [Arabidopsis thalian	0.687	0.756	0.417	1.4e-41
TAIR|locus:2045044	277	AT2G04930 [Arabidopsis thalian	0.585	0.689	0.427	1.1e-37
TAIR|locus:4515103095	307	AT3G19595 [Arabidopsis thalian	0.625	0.664	0.422	2.7e-36
TAIR|locus:2154458	302	AT5G23470 [Arabidopsis thalian	0.742	0.801	0.347	2.9e-32
TAIR|locus:2194656	221	AT1G43600 [Arabidopsis thalian	0.610	0.900	0.391	4.7e-32
TAIR|locus:2194666	255	AT1G43610 [Arabidopsis thalian	0.708	0.905	0.368	4.7e-32
TAIR|locus:2162565	306	AT5G54210 [Arabidopsis thalian	0.570	0.607	0.420	6e-32
TAIR|locus:2056256	302	AT2G02290 [Arabidopsis thalian	0.622	0.672	0.352	1.7e-27

TAIR|locus:4010714056 CPL4 "C-terminal domain phosphatase-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 432 (157.1 bits), Expect = 6.8e-49, Sum P(2) = 6.8e-49
 Identities = 104/236 (44%), Positives = 141/236 (59%)

Query:    64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-------GSLFQMA-NDKLV 115
             Q +RKL LVL+LDHTLL+   ++ L   E+YLK   HS         GSLF +     + 
Sbjct:   118 QRQRKLYLVLDLDHTLLNTTILRDLKPEEEYLKSHTHSLQDGCNVSGGSLFLLEFMQMMT 177

Query:   116 KLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRK 175
             KLRPFV +FL++AS +  +Y+ TM  R YA    KLLD   +YF  R+I+R+D   +  K
Sbjct:   178 KLRPFVHSFLKEASEMFVMYIYTMGDRNYARQMAKLLDPKGEYFGDRVISRDDGTVRHEK 237

Query:   176 NPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH--KSYSETLTDES 233
             + D+V GQE  ++ILDDTE+ W  H +NLIV+ +Y +F       DH  KS SE  +DES
Sbjct:   238 SLDVVLGQESAVLILDDTENAWPKHKDNLIVIERYHFFSSSCRQFDHRYKSLSELKSDES 297

Query:   234 ENEEALANVLRVLKTIHRLFFDSVC-G----DVRTYLPKVRSEFSRDV-LYFSAIF 283
             E + ALA VL+VLK  H LFF++V  G    DVR  L +VR E  +   + FS +F
Sbjct:   298 EPDGALATVLKVLKQAHALFFENVDEGISNRDVRLMLKQVRKEILKGCKIVFSRVF 353

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0008022 "protein C-terminus binding" evidence=IPI

GO:0009651 "response to salt stress" evidence=IEP

TAIR|locus:2012943 AT1G20320 [Arabidopsis thaliana (taxid:3702)]

 Score = 468 (169.8 bits), Expect = 1.9e-44, P = 1.9e-44
 Identities = 105/246 (42%), Positives = 145/246 (58%)

Query:    24 SLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQ---------------EERK 68
             +L C H  VR   C  C   ++  +G +FDY++ GL+ S +                ERK
Sbjct:    17 TLICGHFFVRYGICCNCRSTVDRDYGRAFDYLVHGLQLSHKAVAVTKSLTTQLACLNERK 76

Query:    69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQA 128
             L LVL+LDHTLLH   I  LS GEKYL  +   F   L+ +  + L+KLRPFV  FL++A
Sbjct:    77 LHLVLDLDHTLLHSIMISRLSEGEKYLLGE-SDFREDLWTLDREMLIKLRPFVHEFLKEA 135

Query:   129 SSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIV 188
             + +  +Y+ TM  R YA+A +K +D    YF  R+I R++ +G   K  DLV   E G+V
Sbjct:   136 NEIFSMYVYTMGNRDYAQAVLKWIDPKKVYFGDRVITRDE-SGFS-KTLDLVLADECGVV 193

Query:   189 ILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKT 248
             I+DDT  VW DH  NL+ + KY YFRD   + + KSY+E   DES N+ +LANVL+VLK 
Sbjct:   194 IVDDTRHVWPDHERNLLQITKYSYFRDYSHDKESKSYAEEKRDESRNQGSLANVLKVLKD 253

Query:   249 IHRLFF 254
             +H+ FF
Sbjct:   254 VHQEFF 259

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2090467 AT3G17550 [Arabidopsis thaliana (taxid:3702)]

 Score = 441 (160.3 bits), Expect = 1.4e-41, P = 1.4e-41
 Identities = 103/247 (41%), Positives = 145/247 (58%)

Query:    26 SCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQ---------------EERKLQ 70
             SC H  VR   CI C   +N   G +FDY+++GL+ S +                E+KL 
Sbjct:    28 SCGHWYVRYGVCIACKSTVNKRHGRAFDYLVQGLQLSHEAAAFTKRFTTQFYCLNEKKLN 87

Query:    71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGS-LFQMANDKLVKLRPFVRTFLEQAS 129
             LVL+LDHTLLH   +  LS  EK L ++  S     L+++ +D L KLRPFV  FL++A+
Sbjct:    88 LVLDLDHTLLHSIRVSLLSETEKCLIEEACSTTREDLWKLDSDYLTKLRPFVHEFLKEAN 147

Query:   130 SLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVI 189
              L  +Y+ TM TR YAE+ +KL+D    YF  R+I R++      K  DLV  +ERG+VI
Sbjct:   148 ELFTMYVYTMGTRVYAESLLKLIDPKRIYFGDRVITRDE--SPYVKTLDLVLAEERGVVI 205

Query:   190 LDDTESVWSDHTENLIVLGKYVYFRDKELNG--DHKSYSETLTDESENEEALANVLRVLK 247
             +DDT  VW+ H  NL+ + +Y +FR   +NG  +  SY+E   DES+N   LANVL++LK
Sbjct:   206 VDDTSDVWTHHKSNLVEINEYHFFR---VNGPEESNSYTEEKRDESKNNGGLANVLKLLK 262

Query:   248 TIHRLFF 254
              +H  FF
Sbjct:   263 EVHYGFF 269

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2045044 AT2G04930 [Arabidopsis thaliana (taxid:3702)]

 Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
 Identities = 86/201 (42%), Positives = 129/201 (64%)

Query:    60 RYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGS-LFQMAN-----DK 113
             ++S   E+KL LVL+LDHTLLH + + +LS  E+YL ++  S     L++        D+
Sbjct:    58 KHSCLNEKKLHLVLDLDHTLLHSKLVSNLSQAERYLIQEASSRTREDLWKFRPIGHPIDR 117

Query:   114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKD 173
             L+KLRPFVR FL++A+ +  +++ TM +R YA+A ++++D    YF +R+I +++     
Sbjct:   118 LIKLRPFVRDFLKEANEMFTMFVYTMGSRIYAKAILEMIDPKKLYFGNRVITKDE--SPR 175

Query:   174 RKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDES 233
              K  +LV  +ERG+VI+DDT  +W  H  NLI + KY YFR   L  D  SYSE  TDE 
Sbjct:   176 MKTLNLVLAEERGVVIVDDTRDIWPHHKNNLIQIRKYKYFRRSGL--DSNSYSEKKTDEG 233

Query:   234 ENEEALANVLRVLKTIHRLFF 254
             EN+  LANVL++L+ +HR FF
Sbjct:   234 ENDGGLANVLKLLREVHRRFF 254

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:4515103095 AT3G19595 [Arabidopsis thaliana (taxid:3702)]

 Score = 391 (142.7 bits), Expect = 2.7e-36, P = 2.7e-36
 Identities = 92/218 (42%), Positives = 130/218 (59%)

Query:    66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI-GSLFQM--ANDK---LVKLRP 119
             E+KL LVL+LDHTLLH   + SLS  EKYL ++  S     L+++    D    L KLRP
Sbjct:    89 EKKLHLVLDLDHTLLHTVMVPSLSQAEKYLIEEAGSATRDDLWKIKAVGDPMEFLTKLRP 148

Query:   120 FVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDL 179
             F+R FL++A+    +Y+ T  +R YA+  ++L+D    YF  R+I + +      K  D 
Sbjct:   149 FLRDFLKEANEFFTMYVYTKGSRVYAKQVLELIDPKKLYFGDRVITKTE--SPHMKTLDF 206

Query:   180 VRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEAL 239
             V  +ERG+VI+DDT +VW DH  NL+ + KY YFR K    D   YSE  TDESE+E  L
Sbjct:   207 VLAEERGVVIVDDTRNVWPDHKSNLVDISKYSYFRLK--GQDSMPYSEEKTDESESEGGL 264

Query:   240 ANVLRVLKTIHRLFF----DSVCGDVRTYLPKVRSEFS 273
             ANVL++LK +H+ FF    +    DVR+ L ++  E +
Sbjct:   265 ANVLKLLKEVHQRFFRVEEELESKDVRSLLQEIDFELN 302

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2154458 AT5G23470 [Arabidopsis thaliana (taxid:3702)]

 Score = 353 (129.3 bits), Expect = 2.9e-32, P = 2.9e-32
 Identities = 97/279 (34%), Positives = 142/279 (50%)

Query:    24 SLSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQ---------------EERK 68
             S +C H  VR+  CI C   +++  G SFDY+ +G++ S +               E++K
Sbjct:    27 SPNCNHWFVRNKICISCYTTVDNFEGRSFDYLYKGMQMSNEALGFTKGLISQTSWLEDKK 86

Query:    69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG-SLFQMA--NDKLVKLRPFVRTFL 125
             L LVL+LD TL+H      L   EKY+ +++ S      F      + L+KLRPFV  FL
Sbjct:    87 LHLVLDLDQTLIHTIKTSLLYESEKYIIEEVESRKDIKRFNTGFPEESLIKLRPFVHQFL 146

Query:   126 EQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQER 185
             ++ + +  +Y+ T     YA   ++++D D  YF +R+I R +  G   K  DLV   ER
Sbjct:   147 KECNEMFSMYVYTKGGYDYARLVLEMIDPDKFYFGNRVITRRESPGF--KTLDLVLADER 204

Query:   186 GIVILDDTESVWSDHTENLIVLGKYVYFRDKE--LNGDHKSYSETLTDESENEEALANVL 243
             GIVI+DDT SVW    +NL+ + +Y YF DK    + D K       DES+ +  L   L
Sbjct:   205 GIVIVDDTSSVWPHDKKNLLQIARYKYFGDKSCLFSEDKKKI-----DESDEKGPLNTAL 259

Query:   244 RVLKTIHRLFF--------DSVCGDVRTYLPKVRSEFSR 274
             R LK +H  FF        DSV  DVR  L ++   + R
Sbjct:   260 RFLKDVHEEFFYDWSKKDLDSV--DVRPLLKEISLRWKR 296

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2194656 AT1G43600 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 83/212 (39%), Positives = 128/212 (60%)

Query:    61 YSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDK---LVKL 117
             + +++++KL LVL+LDHTLLH   +  LS  EKYL ++  S    L++   D    ++KL
Sbjct:    11 FQKKKKKKLHLVLDLDHTLLHSVLVSDLSKREKYLLEETDSR-QDLWRRNVDGYEFIIKL 69

Query:   118 RPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE--DFNGKDRK 175
             RPF+  FL +A+ L  +++ TM +  YA+  +KL+D D  YF  R+I RE   FN    K
Sbjct:    70 RPFLHEFLLEANKLFTMHVYTMGSSSYAKQVLKLIDPDKVYFGKRVITREASPFN----K 125

Query:   176 NPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESEN 235
             + DL+   +R +VI+DDT  VW  H  NL+ + KYVYF+      D  SY+E   DES++
Sbjct:   126 SLDLLAADKRRVVIVDDTVHVWPFHKRNLLQITKYVYFKVDGTKWD--SYAEAKKDESQS 183

Query:   236 EEALANVLRVLKTIHRLFFDSV-CGDVRTYLP 266
               +LANVL+ L+ +H+ F + +   D+R  +P
Sbjct:   184 NGSLANVLKFLEDVHKRFEEDLGFKDLRLLIP 215

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2194666 AT1G43610 [Arabidopsis thaliana (taxid:3702)]

 Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
 Identities = 92/250 (36%), Positives = 137/250 (54%)

Query:    29 HTTVRDSRCIFCSQAMNDSF------GLSFDYMLRGLRYSEQEERKLQLVLNLDHTLLHC 82
             H   R  R    S   +D F      G  F   L    +S  +++KL LVL+LDHTLLH 
Sbjct:     7 HLLQRRKRSSSSSSCYDDFFKRLQNHGAWFKKHLTTQLFSVTKKKKLHLVLDLDHTLLHS 66

Query:    83 RNIKSLSSGEKYLKKQIHSFIGSLFQMANDK---LVKLRPFVRTFLEQASSLVDIYLCTM 139
               +  LS  EKYL ++  S    L++   D    ++KLRPF+  FL +A+ L  +++ TM
Sbjct:    67 VLVSDLSKREKYLLEETDSR-QDLWRRNVDGYEFIIKLRPFLHEFLLEANKLFTMHVYTM 125

Query:   140 STRCYAEAAVKLLDLDSKYFSSRIIARE--DFNGKDRKNPDLVRGQERGIVILDDTESVW 197
              +  YA+  +KL+D D  YF  R+I RE   FN    K+ DL+   +R +VI+DDT  VW
Sbjct:   126 GSSSYAKQVLKLIDPDKVYFGKRVITREASPFN----KSLDLLAADKRRVVIVDDTVHVW 181

Query:   198 SDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSV 257
               H  NL+ + KY+YF+      D  SY+E   DES++  +LANVL+ L+ +H+ F + +
Sbjct:   182 PFHKRNLLQITKYIYFKVDGTKWD--SYAEAKKDESQSNGSLANVLKFLEVVHKRFEEDL 239

Query:   258 -CGDVRTYLP 266
                D+R  +P
Sbjct:   240 GFKDLRLLIP 249

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2162565 AT5G54210 [Arabidopsis thaliana (taxid:3702)]

 Score = 350 (128.3 bits), Expect = 6.0e-32, P = 6.0e-32
 Identities = 82/195 (42%), Positives = 118/195 (60%)

Query:    66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM----ANDKLVKLRPFV 121
             ++KL LVL+LDHTLLH   I +L+  E YL ++  S    L ++    +++ L+KLRPFV
Sbjct:    86 DKKLHLVLDLDHTLLHTVMISNLTKEETYLIEEEDSR-EDLRRLNGGYSSEFLIKLRPFV 144

Query:   122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR 181
               FL++A+ +  +Y+ TM  R YA   + L+D +  YF  R+I R +      K  DLV 
Sbjct:   145 HEFLKEANKMFSMYVYTMGDRDYAMNVLNLIDPEKVYFGDRVITRNE--SPYIKTLDLVL 202

Query:   182 GQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH--KSYSETLTDESENEEAL 239
               E G+VI+DDT  VW DH  NL+ + KY YF DK  +     KSY+E   DES N+ +L
Sbjct:   203 ADECGVVIVDDTPHVWPDHKRNLLEITKYNYFSDKTRHDVKYTKSYAEEKRDESRNDGSL 262

Query:   240 ANVLRVLKTIHRLFF 254
             ANVL+V+K ++  FF
Sbjct:   263 ANVLKVIKQVYEGFF 277

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

TAIR|locus:2056256 AT2G02290 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 78/221 (35%), Positives = 117/221 (52%)

Query:    65 EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG-SLFQMA--NDKLVKLRPFV 121
             E++KL LVL+LDHTL+H   +  LS  EKY+ +++ S      F      + L+KLR FV
Sbjct:    83 EDKKLHLVLDLDHTLVHTIKVSQLSESEKYITEEVESRKDLRRFNTGFPEESLIKLRSFV 142

Query:   122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR 181
               FL++ + +  +Y+ T     YA+  ++++D D  YF +R+I R +  G   K  DLV 
Sbjct:   143 HQFLKECNEMFSLYVYTKGGYDYAQLVLEMIDPDKIYFGNRVITRRESPGF--KTLDLVL 200

Query:   182 GQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALAN 241
               ERGIV++DD  SVW    +NL+ + +Y YF D+       S  +   DES+ +  L  
Sbjct:   201 ADERGIVVVDDKSSVWPHDKKNLLQIARYKYFGDQSCL---LSECKKKIDESDEKGPLNT 257

Query:   242 VLRVLKTIHRLFF--------DSVCGDVRTYLPKVRSEFSR 274
              LR L  +H  FF        DSV  DVR  L ++   + R
Sbjct:   258 ALRFLMDVHEEFFCDWSRKDLDSV--DVRPLLKEISLRWKR 296

GO:0004721 "phosphoprotein phosphatase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.1.3	0.766
3rd Layer	3.1.3.16	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	326
TIGR02250	156	TIGR02250, FCP1_euk, FCP1-like phosphatase, phosph	8e-46
smart00577	148	smart00577, CPDc, catalytic domain of ctd-like pho	7e-33
pfam03031	153	pfam03031, NIF, NLI interacting factor-like phosph	8e-19
TIGR02251	162	TIGR02251, HIF-SF_euk, Dullard-like phosphatase do	8e-13
COG5190	390	COG5190, FCP1, TFIIF-interacting CTD phosphatases,	2e-04

>gnl|CDD|131304 TIGR02250, FCP1_euk, FCP1-like phosphatase, phosphatase domain

 Score =  152 bits (386), Expect = 8e-46
 Identities = 64/155 (41%), Positives = 88/155 (56%), Gaps = 5/155 (3%)

Query: 64  QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFI---GSLFQM-ANDKLVKLRP 119
             E+KL LVL+LD TL+H     +LS  EKY  ++ +S        F +     L KLRP
Sbjct: 2   LREKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRP 61

Query: 120 FVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKN-PD 178
           F+  FL++AS L ++++ TM TR YA+A  KL+D D KYF  RII+R++      K+   
Sbjct: 62  FLHEFLKEASKLYEMHVYTMGTRAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLR 121

Query: 179 LVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
           L    E  +VI+DD E VW  H  NLI +  Y YF
Sbjct: 122 LFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF 156

This model represents the phosphatase domain of the humanRNA polymerase II subunit A C-terminal domain phosphatase (FCP1, ) and closely related phosphatases from eukaryotes including plants, fungi and slime mold. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDDppphW). This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3.This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the pfam03031. Length = 156

>gnl|CDD|214729 smart00577, CPDc, catalytic domain of ctd-like phosphatases

 Score =  118 bits (298), Expect = 7e-33
 Identities = 48/153 (31%), Positives = 72/153 (47%), Gaps = 9/153 (5%)

Query: 67  RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLE 126
           +K  LVL+LD TL+H  +    S  E   +  I   +           VK RP V  FL+
Sbjct: 1   KKKTLVLDLDETLVHSTHR---SFKEWTNRDFIVPVLIDGHPHGV--YVKKRPGVDEFLK 55

Query: 127 QASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED---FNGKDRKNPDLVRGQ 183
           +AS L ++ + T   R YA+  + LLD   KYF  R + R++     GK  K+  L+   
Sbjct: 56  RASELFELVVFTAGLRMYADPVLDLLDPK-KYFGYRRLFRDECVFVKGKYVKDLSLLNRD 114

Query: 184 ERGIVILDDTESVWSDHTENLIVLGKYVYFRDK 216
              ++I+DD+   W  H ENLI +  +    D 
Sbjct: 115 LSKVIIIDDSPDSWPFHPENLIPIKPWFGDPDD 147

Length = 148

>gnl|CDD|217328 pfam03031, NIF, NLI interacting factor-like phosphatase

 Score = 81.5 bits (202), Expect = 8e-19
 Identities = 39/150 (26%), Positives = 61/150 (40%), Gaps = 16/150 (10%)

Query: 71  LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS 130
           LVL+LD TL+H          E  L                   VK RP +  FL++ S 
Sbjct: 3   LVLDLDETLVHSSF-------EPDLPFDFVLNFNHGVY------VKKRPGLDEFLQELSK 49

Query: 131 LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVIL 190
             +I + T S++ YA+  +  LD   KYF    + RE       K+  L+      +VI+
Sbjct: 50  YYEIVIFTASSKEYADPVLDKLDPKKKYF-KHRLYRES-CTFYVKDLSLLGRDLSRVVIV 107

Query: 191 DDTESVWSDHTENLIVLGKYV-YFRDKELN 219
           D++   +    +N I +  +     D EL 
Sbjct: 108 DNSPRSFLLQPDNGIPIPPFYGDPDDTELL 137

This family contains a number of NLI interacting factor isoforms and also an N-terminal regions of RNA polymerase II CTC phosphatase and FCP1 serine phosphatase. This region has been identified as the minimal phosphatase domain. Length = 153

>gnl|CDD|233801 TIGR02251, HIF-SF_euk, Dullard-like phosphatase domain

 Score = 65.0 bits (159), Expect = 8e-13
 Identities = 44/155 (28%), Positives = 68/155 (43%), Gaps = 12/155 (7%)

Query: 68  KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQ 127
           K  LVL+LD TL+H          +  +   I   I  ++       V  RP V  FLE+
Sbjct: 1   KKTLVLDLDETLVHSTFKMPKVDADFKVPVLIDGKIIPVY-------VFKRPHVDEFLER 53

Query: 128 ASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED---FNGKDRKNPDLVRGQE 184
            S   ++ + T S   YA+  + +LD   K  S R+  RE     NGK  K+  LV    
Sbjct: 54  VSKWYELVIFTASLEEYADPVLDILDRGGKVISRRLY-RESCVFTNGKYVKDLSLVGKDL 112

Query: 185 RGIVILDDTESVWSDHTENLIVLGKYVY-FRDKEL 218
             ++I+D++   +S   +N I +  +     D EL
Sbjct: 113 SKVIIIDNSPYSYSLQPDNAIPIKSWFGDPNDTEL 147

This model represents the putative phosphatase domain of a family of eukaryotic proteins including "Dullard" , and the NLI interacting factor (NIF)-like phosphatases. This domain is a member of the haloacid dehalogenase (HAD) superfamily by virtue of a conserved set of three catalytic motifs and a conserved fold as predicted by PSIPRED. The third motif in this family is distinctive (hhhhDNxPxxa) and aparrently lacking the last aspartate. This domain is classified as a "Class III" HAD, since there is no large "cap" domain found between motifs 1 and 2 or motifs 2 and 3. This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the pfam03031. Length = 162

>gnl|CDD|227517 COG5190, FCP1, TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

 Score = 42.8 bits (101), Expect = 2e-04
 Identities = 41/147 (27%), Positives = 71/147 (48%), Gaps = 15/147 (10%)

Query: 66  ERKLQLVLNLDHTLLHCRN--------IKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKL 117
           ++KL LV++LD T++H            +SL    K +  +        +       VK 
Sbjct: 24  DKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYY------VKA 77

Query: 118 RPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNP 177
           RP +  FL + S L ++++ TM TR YAE   K++D   K F+ RI++R++     +K+ 
Sbjct: 78  RPKLFPFLTKISPLYELHIYTMGTRAYAERIAKIIDPTGKLFNDRILSRDESGSLSQKSL 137

Query: 178 DLVRGQ-ERGIVILDDTESVWSDHTEN 203
             +  + +  +VI+DD   VW     N
Sbjct: 138 SRLFPKDQNMVVIIDDRGDVWGVGDMN 164

Length = 390

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	326
KOG0323	635	consensus TFIIF-interacting CTD phosphatases, incl	100.0
TIGR02250	156	FCP1_euk FCP1-like phosphatase, phosphatase domain	100.0
KOG1605	262	consensus TFIIF-interacting CTD phosphatase, inclu	100.0
TIGR02251	162	HIF-SF_euk Dullard-like phosphatase domain. This d	100.0
PF03031	159	NIF: NLI interacting factor-like phosphatase; Inte	100.0
TIGR02245	195	HAD_IIID1 HAD-superfamily subfamily IIID hydrolase	99.97
smart00577	148	CPDc catalytic domain of ctd-like phosphatases.	99.92
KOG2832	393	consensus TFIIF-interacting CTD phosphatase, inclu	99.92
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.83
COG5190	390	FCP1 TFIIF-interacting CTD phosphatases, including	99.73
TIGR01681	128	HAD-SF-IIIC HAD-superfamily phosphatase, subfamily	98.44
TIGR01685	174	MDP-1 magnesium-dependent phosphatase-1. This mode	98.33
TIGR01993	184	Pyr-5-nucltdase pyrimidine 5'-nucleotidase. These	98.27
TIGR01684	301	viral_ppase viral phosphatase. These proteins also	98.17
PRK13288	214	pyrophosphatase PpaX; Provisional	98.16
TIGR01686	320	FkbH FkbH-like domain. The C-terminal portion of t	98.14
PLN02575	381	haloacid dehalogenase-like hydrolase	98.13
COG4996	164	Predicted phosphatase [General function prediction	98.13
PRK14988	224	GMP/IMP nucleotidase; Provisional	98.12
cd01427	139	HAD_like Haloacid dehalogenase-like hydrolases. Th	98.12
PHA03398	303	viral phosphatase superfamily protein; Provisional	98.08
TIGR01662	132	HAD-SF-IIIA HAD-superfamily hydrolase, subfamily I	98.02
TIGR01656	147	Histidinol-ppas histidinol-phosphate phosphatase f	98.01
PRK13225	273	phosphoglycolate phosphatase; Provisional	97.98
TIGR03351	220	PhnX-like phosphonatase-like hydrolase. This clade	97.97
TIGR01261	161	hisB_Nterm histidinol-phosphatase. This model desc	97.89
PHA02530	300	pseT polynucleotide kinase; Provisional	97.85
PHA02597	197	30.2 hypothetical protein; Provisional	97.81
TIGR01664	166	DNA-3'-Pase DNA 3'-phosphatase. The central phosph	97.8
PLN02940	382	riboflavin kinase	97.72
TIGR00213	176	GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase	97.71
PF12689	169	Acid_PPase: Acid Phosphatase; InterPro: IPR010036	97.68
TIGR01672	237	AphA HAD superfamily (subfamily IIIB) phosphatase,	97.65
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	97.62
PRK08942	181	D,D-heptose 1,7-bisphosphate phosphatase; Validate	97.6
TIGR00338	219	serB phosphoserine phosphatase SerB. Phosphoserine	97.55
PF05152	297	DUF705: Protein of unknown function (DUF705); Inte	97.49
TIGR01489	188	DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopent	97.4
PF13419	176	HAD_2: Haloacid dehalogenase-like hydrolase; PDB:	97.34
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	97.32
TIGR01668	170	YqeG_hyp_ppase HAD superfamily (subfamily IIIA) ph	97.22
PLN02770	248	haloacid dehalogenase-like hydrolase family protei	97.13
PRK06769	173	hypothetical protein; Validated	97.13
PLN03243	260	haloacid dehalogenase-like hydrolase; Provisional	97.12
TIGR01449	213	PGP_bact 2-phosphoglycolate phosphatase, prokaryot	97.11
TIGR01533	266	lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) famil	97.08
TIGR01428	198	HAD_type_II 2-haloalkanoic acid dehalogenase, type	97.07
TIGR01509	183	HAD-SF-IA-v3 haloacid dehalogenase superfamily, su	97.05
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	97.04
PRK05446	354	imidazole glycerol-phosphate dehydratase/histidino	97.03
TIGR02254	224	YjjG/YfnB HAD superfamily (subfamily IA) hydrolase	97.03
PRK11009	237	aphA acid phosphatase/phosphotransferase; Provisio	97.0
PRK10563	221	6-phosphogluconate phosphatase; Provisional	97.0
PLN02954	224	phosphoserine phosphatase	96.93
TIGR01663	526	PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase	96.89
PRK09449	224	dUMP phosphatase; Provisional	96.89
TIGR01459	242	HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolas	96.86
KOG3109	244	consensus Haloacid dehalogenase-like hydrolase [Ge	96.84
TIGR01422	253	phosphonatase phosphonoacetaldehyde hydrolase. Thi	96.84
PRK08238	479	hypothetical protein; Validated	96.74
PRK10826	222	2-deoxyglucose-6-phosphatase; Provisional	96.72
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	96.69
PF00533	78	BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IP	96.58
PRK13226	229	phosphoglycolate phosphatase; Provisional	96.57
PRK11587	218	putative phosphatase; Provisional	96.54
PRK13222	226	phosphoglycolate phosphatase; Provisional	96.51
COG1011	229	Predicted hydrolase (HAD superfamily) [General fun	96.5
TIGR02009	185	PGMB-YQAB-SF beta-phosphoglucomutase family hydrol	96.47
TIGR01670	154	YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-pho	96.43
PRK09456	199	?-D-glucose-1-phosphatase; Provisional	96.42
PF08645	159	PNK3P: Polynucleotide kinase 3 phosphatase; InterP	96.24
PRK13223	272	phosphoglycolate phosphatase; Provisional	96.22
PLN02779	286	haloacid dehalogenase-like hydrolase family protei	96.14
COG2179	175	Predicted hydrolase of the HAD superfamily [Genera	96.13
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	96.12
PRK13478	267	phosphonoacetaldehyde hydrolase; Provisional	96.12
TIGR01549	154	HAD-SF-IA-v1 haloacid dehalogenase superfamily, su	96.1
TIGR01990	185	bPGM beta-phosphoglucomutase. The enzyme from L. l	96.03
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	96.03
TIGR01691	220	enolase-ppase 2,3-diketo-5-methylthio-1-phosphopen	95.94
COG0637	221	Predicted phosphatase/phosphohexomutase [General f	95.93
PF13344	101	Hydrolase_6: Haloacid dehalogenase-like hydrolase;	95.92
TIGR01491	201	HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPa	95.92
COG0560	212	SerB Phosphoserine phosphatase [Amino acid transpo	95.84
PF12738	63	PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2W	95.79
TIGR02247	211	HAD-1A3-hyp Epoxide hydrolase N-terminal domain-li	95.75
TIGR01493	175	HAD-SF-IA-v2 Haloacid dehalogenase superfamily, su	95.54
PLN02811	220	hydrolase	95.46
cd00027	72	BRCT Breast Cancer Suppressor Protein (BRCA1), car	95.4
TIGR01689	126	EcbF-BcbF capsule biosynthesis phosphatase. Due to	95.39
TIGR03333	214	salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl	95.33
smart00292	80	BRCT breast cancer carboxy-terminal domain.	95.2
PRK06698	459	bifunctional 5'-methylthioadenosine/S-adenosylhomo	95.11
PRK09484	183	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	95.11
PRK00192	273	mannosyl-3-phosphoglycerate phosphatase; Reviewed	95.04
PLN02919	1057	haloacid dehalogenase-like hydrolase family protei	94.91
PRK13582	205	thrH phosphoserine phosphatase; Provisional	94.9
PF08282	254	Hydrolase_3: haloacid dehalogenase-like hydrolase;	94.68
TIGR01544	277	HAD-SF-IE haloacid dehalogenase superfamily, subfa	94.67
PF06941	191	NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosol	94.58
TIGR02463	221	MPGP_rel mannosyl-3-phosphoglycerate phosphatase-r	94.51
COG0561	264	Cof Predicted hydrolases of the HAD superfamily [G	94.49
TIGR02461	225	osmo_MPG_phos mannosyl-3-phosphoglycerate phosphat	94.46
TIGR01456	321	CECR5 HAD-superfamily class IIA hydrolase, TIGR014	94.39
PF09419	168	PGP_phosphatase: Mitochondrial PGP phosphatase; In	94.15
PRK03669	271	mannosyl-3-phosphoglycerate phosphatase; Reviewed	94.08
TIGR01487	215	SPP-like sucrose-phosphate phosphatase-like hydrol	93.97
TIGR00099	256	Cof-subfamily Cof subfamily of IIB subfamily of ha	93.84
smart00775	157	LNS2 LNS2 domain. This domain is found in Saccharo	93.73
PTZ00445	219	p36-lilke protein; Provisional	93.72
TIGR01488	177	HAD-SF-IB Haloacid Dehalogenase superfamily, subfa	93.67
PRK10513	270	sugar phosphate phosphatase; Provisional	93.58
COG0241	181	HisB Histidinol phosphatase and related phosphatas	93.52
PRK10444	248	UMP phosphatase; Provisional	93.41
PRK10530	272	pyridoxal phosphate (PLP) phosphatase; Provisional	93.18
PRK01158	230	phosphoglycolate phosphatase; Provisional	93.14
TIGR01484	204	HAD-SF-IIB HAD-superfamily hydrolase, subfamily II	92.95
TIGR01486	256	HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosph	92.95
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	92.87
TIGR01458	257	HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydr	92.64
COG3882	574	FkbH Predicted enzyme involved in methoxymalonyl-A	92.47
PRK15126	272	thiamin pyrimidine pyrophosphate hydrolase; Provis	92.37
PLN02645	311	phosphoglycolate phosphatase	92.35
COG0546	220	Gph Predicted phosphatases [General function predi	92.32
PRK10976	266	putative hydrolase; Provisional	92.27
TIGR01452	279	PGP_euk phosphoglycolate/pyridoxal phosphate phosp	92.2
TIGR01482	225	SPP-subfamily Sucrose-phosphate phosphatase subfam	91.94
PRK10748	238	flavin mononucleotide phosphatase; Provisional	91.8
PRK10187	266	trehalose-6-phosphate phosphatase; Provisional	91.75
TIGR01675	229	plant-AP plant acid phosphatase. This model explic	91.55
PF06888	234	Put_Phosphatase: Putative Phosphatase; InterPro: I	91.38
TIGR01485	249	SPP_plant-cyano sucrose-6F-phosphate phosphohydrol	91.34
COG2503	274	Predicted secreted acid phosphatase [General funct	91.32
TIGR01457	249	HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydr	91.25
COG0647	269	NagD Predicted sugar phosphatases of the HAD super	90.79
PF11019	252	DUF2608: Protein of unknown function (DUF2608); In	90.51
PF03767	229	Acid_phosphat_B: HAD superfamily, subfamily IIIB (	89.71
TIGR00685	244	T6PP trehalose-phosphatase. At least 18 distinct s	89.6
PRK12702	302	mannosyl-3-phosphoglycerate phosphatase; Reviewed	89.51
PTZ00174	247	phosphomannomutase; Provisional	89.3
TIGR01460	236	HAD-SF-IIA Haloacid Dehalogenase Superfamily Class	88.62
PRK14502	694	bifunctional mannosyl-3-phosphoglycerate synthase/	88.59
PLN02423	245	phosphomannomutase	88.21
KOG3120	256	consensus Predicted haloacid dehalogenase-like hyd	88.01
TIGR01490	202	HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrol	87.16
TIGR01548	197	HAD-SF-IA-hyp1 haloacid dehalogenase superfamily,	86.53
COG4359	220	Uncharacterized conserved protein [Function unknow	86.39
COG4502	180	5'(3')-deoxyribonucleotidase [Nucleotide transport	85.88
PLN02887	580	hydrolase family protein	85.63
TIGR02244	343	HAD-IG-Ncltidse HAD superfamily (subfamily IG) hyd	85.42
PLN02151	354	trehalose-phosphatase	85.33
PRK10725	188	fructose-1-P/6-phosphogluconate phosphatase; Provi	84.99
PLN03017	366	trehalose-phosphatase	84.5
TIGR02726	169	phenyl_P_delta phenylphosphate carboxylase, delta	83.1
PLN02580	384	trehalose-phosphatase	83.05
PRK11587	218	putative phosphatase; Provisional	82.64
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	81.36
TIGR01454	205	AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthes	81.14
TIGR02253	221	CTE7 HAD superfamily (subfamily IA) hydrolase, TIG	80.74
TIGR02252	203	DREG-2 REG-2-like, HAD superfamily (subfamily IA)	80.31

>KOG0323 consensus TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=100.00  E-value=1.3e-59  Score=476.80  Aligned_cols=301  Identities=37%  Similarity=0.563  Sum_probs=263.6

Q ss_pred             CCCCccccccccccccccccccccCcceeeeccceecCccc---------------cCceEEEEeCCCceeeecccCCCC
Q 040058           25 LSCAHTTVRDSRCIFCSQAMNDSFGLSFDYMLRGLRYSEQE---------------ERKLQLVLNLDHTLLHCRNIKSLS   89 (326)
Q Consensus        25 ~~C~H~~~~~~~C~~Cg~~~~~~~~~~~~~~~~~l~~s~~~---------------~~Kl~LVLDLD~TLIhs~~~~~~~   89 (326)
                      +.|.|+++++|||+.||++|+...+..+.|+..+++++..+               .++|.||+|||+||+|+...+.+.
T Consensus        88 ~~C~H~~v~~GlC~~Cg~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~lv~Dld~tllh~~~~~~l~  167 (635)
T KOG0323|consen   88 SCCEHFTVFGGLCASCGKDLESLQGRSFDYLVKGLQLSNEMVAFTKTLTTQFSSLNRKKLHLVLDLDHTLLHTILKSDLS  167 (635)
T ss_pred             CCccceeecccHHHHHHHHHHHhhccchhcccchhhhhhhhhhhhhHHHHHHHHHhhhcceeehhhhhHHHHhhccchhh
Confidence            89999999999999999999999888889998888888765               566799999999999999999998


Q ss_pred             ccchhhhccccc--cccceeeccc-----eEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccce
Q 040058           90 SGEKYLKKQIHS--FIGSLFQMAN-----DKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSR  162 (326)
Q Consensus        90 ~~e~~l~~~~~~--~~~~l~~~~~-----~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~R  162 (326)
                      +++.++..+..+  ...++|.++.     +||||+|||+.+||++++++|||||||||+|.||..|+++|||+|.||++|
T Consensus       168 e~~~~l~~~~~~~~sn~dl~~~~~~~~~~~~~vKlRP~~~efL~~~sklfemhVyTmg~R~YA~~i~~liDP~~~lF~dR  247 (635)
T KOG0323|consen  168 ETEKYLKEEAESVESNKDLFRFNPLGHDTEYLVKLRPFVHEFLKEANKLFEMHVYTMGTRDYALEIAKLIDPEGKYFGDR  247 (635)
T ss_pred             hhhhhcccccccccccccceeecccCCCceEEEEeCccHHHHHHHHHhhceeEEEeccchHHHHHHHHHhCCCCccccce
Confidence            999888877664  2356776652     899999999999999999999999999999999999999999999999999


Q ss_pred             EEeecCCCCCccccCCC-CCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccc-cCC--------------------
Q 040058          163 IIAREDFNGKDRKNPDL-VRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKE-LNG--------------------  220 (326)
Q Consensus       163 i~sRd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~-~~~--------------------  220 (326)
                      |+||++....-.+||.. ++++.+||||||||.+||+.++.|+|+|.||.||.+.| +|.                    
T Consensus       248 Iisrde~~~~kt~dL~~~~p~g~smvvIIDDr~dVW~~~~~nLI~i~~y~yF~~~gd~nap~~~~~~~~~~~~~~~~~~k  327 (635)
T KOG0323|consen  248 IISRDESPFFKTLDLVLLFPCGDSMVVIIDDRSDVWPDHKRNLIQIAPYPYFSGQGDINAPPPLHVLRNVACSVRGAFFK  327 (635)
T ss_pred             EEEecCCCcccccccccCCCCCCccEEEEeCccccccCCCcceEEeeeeecccCcccccCCcccccccchhccccccccc
Confidence            99999987766667765 46899999999999999998877999999999999998 553                    


Q ss_pred             ------------------------------------------------------CCCCccccccCCCccHHHHHHHHHHH
Q 040058          221 ------------------------------------------------------DHKSYSETLTDESENEEALANVLRVL  246 (326)
Q Consensus       221 ------------------------------------------------------~~~s~~e~~~d~~~~D~~L~~l~~~L  246 (326)
                                                                            ...|+.+...|+.+.|++|.+++++|
T Consensus       328 ~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~s~~~~~~de~~~D~~L~~~~kvl  407 (635)
T KOG0323|consen  328 EFDPSLKSRISEVRYEDDDESNPTSYSVELSANPGPLKQDGMDEFVPEENAPEARSGSYREKKSDESDEDGELANLLKVL  407 (635)
T ss_pred             ccCcccccccccccccccccccCcccccccccccCcccccccccccccccchhhcccccccccccccccchhHHHHhhhh
Confidence                                                                  34566667788889999999999999


Q ss_pred             HHHHHHhcCC--------CCCcHHHHHHHHhccC-CCcEEEEcCccch---------HHHHHHH----------------
Q 040058          247 KTIHRLFFDS--------VCGDVRTYLPKVRSEF-SRDVLYFSAIFRD---------CLWAEQE----------------  292 (326)
Q Consensus       247 ~~ih~~ff~~--------~~~DVr~il~~~r~~v-~g~~ivfs~~~p~---------~~~~~ae----------------  292 (326)
                      +.||..||..        ..+|||.+|+++|.++ +||.++|||++|.         -.|..++                
T Consensus       408 ~~vH~~ff~~~~~~~e~~~~~Dvr~~i~~~~~~v~~~~~~vfSg~~P~~~~~~~s~~~~~~~~~g~vs~~~~~~~~th~i  487 (635)
T KOG0323|consen  408 KPVHKGFFAKYDEVEETLESPDVRLLIPELRTKVLKGSQIVFSGLHPTGSTDESADILGVAQQLGAVSAPDVSDKTTHLI  487 (635)
T ss_pred             cccchhhhhccccccccccCCChhhhhhhhhhHHhhccceeecccccCcCCcchhhhhhhhhcccceecccccchhhhHH
Confidence            9999999995        4589999999999999 9999999999998         2354433                


Q ss_pred             --------HHHhhh-CCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          293 --------EKFLVQ-EKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       293 --------a~~a~~-~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                              ++.|.. +.++||++.||+.|...|.++.|..|+
T Consensus       488 ~~~~gt~k~~~a~~~~~~~Vv~~~wl~~~~e~w~~v~ek~~~  529 (635)
T KOG0323|consen  488 AANAGTKKVYKAVVSGSAKVVNAAWLWRSLEKWGKVEEKLEP  529 (635)
T ss_pred             hhccCcceeeccccccceeEechhHHHHHHHHhcchhccccc
Confidence                    122333 238999999999999999999999885

>TIGR02250 FCP1_euk FCP1-like phosphatase, phosphatase domain

Probab=100.00  E-value=3.3e-38  Score=274.21  Aligned_cols=148  Identities=43%  Similarity=0.636  Sum_probs=125.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccc-cccceeecc--c-eEEEEeCccHHHHHHHhhcCceEEEEcCCc
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHS-FIGSLFQMA--N-DKLVKLRPFVRTFLEQASSLVDIYLCTMST  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~-~~~~l~~~~--~-~~~vklRPgl~eFL~~ls~~yEl~IyT~g~  141 (326)
                      ++|++||||||||||||+..+..+.++.+....... ...+++.+.  . .+++++|||+.+||+++++.||++|||+++
T Consensus         4 ~~kl~LVLDLDeTLihs~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~v~~rPgv~efL~~l~~~yel~I~T~~~   83 (156)
T TIGR02250         4 EKKLHLVLDLDQTLIHTTKDPTLSEWEKYDIEEPNSETRRDLRKFNLGTMWYLTKLRPFLHEFLKEASKLYEMHVYTMGT   83 (156)
T ss_pred             CCceEEEEeCCCCcccccccCccchhhhcccccCCccccccceEEEcCCeEEEEEECCCHHHHHHHHHhhcEEEEEeCCc
Confidence            689999999999999999887655443321111110 012334433  2 789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCccccceEEeecCCCCCccccCC-CCCCCCCcEEEEeCCchhhccCCCCeEEeCccccc
Q 040058          142 RCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPD-LVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF  213 (326)
Q Consensus       142 ~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f  213 (326)
                      +.||++|++.|||.+.+|++|+++|++|.+.+.|||+ .+++++++||||||++++|..|++|+|+|+||.||
T Consensus        84 ~~yA~~vl~~ldp~~~~F~~ri~~rd~~~~~~~KdL~~i~~~d~~~vvivDd~~~~~~~~~~N~i~i~~~~~f  156 (156)
T TIGR02250        84 RAYAQAIAKLIDPDGKYFGDRIISRDESGSPHTKSLLRLFPADESMVVIIDDREDVWPWHKRNLIQIEPYNYF  156 (156)
T ss_pred             HHHHHHHHHHhCcCCCeeccEEEEeccCCCCccccHHHHcCCCcccEEEEeCCHHHhhcCccCEEEeCCcccC
Confidence            9999999999999999998899999999999999995 56889999999999999999999999999999998

This domain is related to domains found in the human NLI interacting factor-like phosphatases, and together both are detected by the Pfam model pfam03031.

>KOG1605 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=100.00  E-value=7.7e-36  Score=277.24  Aligned_cols=168  Identities=25%  Similarity=0.403  Sum_probs=144.1

Q ss_pred             cCceEEEEeCCCceeeecc-cCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRN-IKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~-~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~  143 (326)
                      .+|++|||||||||+||+. .+...+.  .+..++      .+. ....+||.+|||+++||+.++++||++|||++.+.
T Consensus        87 ~~kk~lVLDLDeTLvHss~~~~~~~~~--d~~~~v------~~~~~~~~~yV~kRP~vdeFL~~~s~~~e~v~FTAs~~~  158 (262)
T KOG1605|consen   87 VGRKTLVLDLDETLVHSSLNLKPIVNA--DFTVPV------EIDGHIHQVYVRKRPHVDEFLSRVSKWYELVLFTASLEV  158 (262)
T ss_pred             CCCceEEEeCCCcccccccccCCCCCc--ceeeee------eeCCcceEEEEEcCCCHHHHHHHhHHHHHHHHHHhhhHH
Confidence            8999999999999999994 2211111  111111      111 22389999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCC
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNG  220 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~  220 (326)
                      ||.+|++.|||.+++|.+|+| |++|.   +.++|||..+++++++||||||+|.++..|++|+|+|++|.         
T Consensus       159 Ya~~v~D~LD~~~~i~~~Rly-R~~C~~~~g~yvKdls~~~~dL~~viIiDNsP~sy~~~p~NgIpI~sw~---------  228 (262)
T KOG1605|consen  159 YADPLLDILDPDRKIISHRLY-RDSCTLKDGNYVKDLSVLGRDLSKVIIVDNSPQSYRLQPENGIPIKSWF---------  228 (262)
T ss_pred             HHHHHHHHccCCCCeeeeeec-ccceEeECCcEEEEcceeccCcccEEEEcCChHHhccCccCCCcccccc---------
Confidence            999999999998899999998 99997   47999999999999999999999999999999999999998         


Q ss_pred             CCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 040058          221 DHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKV  268 (326)
Q Consensus       221 ~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~  268 (326)
                                 .+..|.+|++|+++|+.+..      ..|||.+++..
T Consensus       229 -----------~d~~D~eLL~LlpfLe~L~~------~~Dvr~~l~~~  259 (262)
T KOG1605|consen  229 -----------DDPTDTELLKLLPFLEALAF------VDDVRPILARR  259 (262)
T ss_pred             -----------cCCChHHHHHHHHHHHHhcc------cccHHHHHHHh
Confidence                       36779999999999999985      39999999864

>TIGR02251 HIF-SF_euk Dullard-like phosphatase domain

Probab=100.00  E-value=1.2e-34  Score=253.17  Aligned_cols=156  Identities=28%  Similarity=0.370  Sum_probs=130.8

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      |++||||||||||||+..+....+  .+...+      .+.. ...+||++|||+.|||+++++.||++|||+|++.||+
T Consensus         1 k~~lvlDLDeTLi~~~~~~~~~~~--~~~~~~------~~~~~~~~~~v~~RPgl~eFL~~l~~~yei~I~Ts~~~~yA~   72 (162)
T TIGR02251         1 KKTLVLDLDETLVHSTFKMPKVDA--DFKVPV------LIDGKIIPVYVFKRPHVDEFLERVSKWYELVIFTASLEEYAD   72 (162)
T ss_pred             CcEEEEcCCCCcCCCCCCCCCCCC--ceEEEE------EecCcEEEEEEEECCCHHHHHHHHHhcCEEEEEcCCcHHHHH
Confidence            689999999999999866521111  110000      0111 1289999999999999999999999999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCCC
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHK  223 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~~  223 (326)
                      +|++.|||.+.+|.++++ |++|.   +.+.|+|+.++++++++|||||++..|..+++|+|+|.+|.            
T Consensus        73 ~il~~ldp~~~~f~~~l~-r~~~~~~~~~~~K~L~~l~~~~~~vIiVDD~~~~~~~~~~NgI~i~~f~------------  139 (162)
T TIGR02251        73 PVLDILDRGGKVISRRLY-RESCVFTNGKYVKDLSLVGKDLSKVIIIDNSPYSYSLQPDNAIPIKSWF------------  139 (162)
T ss_pred             HHHHHHCcCCCEEeEEEE-ccccEEeCCCEEeEchhcCCChhhEEEEeCChhhhccCccCEeecCCCC------------
Confidence            999999999889987555 99985   45899999999999999999999999999999999999998            


Q ss_pred             CccccccCCCccHHHHHHHHHHHHHHHHH
Q 040058          224 SYSETLTDESENEEALANVLRVLKTIHRL  252 (326)
Q Consensus       224 s~~e~~~d~~~~D~~L~~l~~~L~~ih~~  252 (326)
                              .+.+|.+|..|+++|+.|...
T Consensus       140 --------~~~~D~~L~~l~~~L~~l~~~  160 (162)
T TIGR02251       140 --------GDPNDTELLNLIPFLEGLRFE  160 (162)
T ss_pred             --------CCCCHHHHHHHHHHHHHHhcc
Confidence                    267899999999999999863

This domain is related to domains found in FCP1-like phosphatases (TIGR02250), and together both are detected by the Pfam model pfam03031.

>PF03031 NIF: NLI interacting factor-like phosphatase; InterPro: IPR004274 The function of this domain is unclear

Probab=100.00  E-value=2.2e-33  Score=242.60  Aligned_cols=155  Identities=28%  Similarity=0.415  Sum_probs=116.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v  148 (326)
                      ++|||||||||||+...+..+ ..  .         ........+++++|||+++||+++++.|||+|||+|++.||++|
T Consensus         1 k~LVlDLD~TLv~~~~~~~~~-~~--~---------~~~~~~~~~~v~~RP~l~~FL~~l~~~~ev~i~T~~~~~ya~~v   68 (159)
T PF03031_consen    1 KTLVLDLDGTLVHSSSKSPLP-YD--F---------KIIDQRGGYYVKLRPGLDEFLEELSKHYEVVIWTSASEEYAEPV   68 (159)
T ss_dssp             EEEEEE-CTTTEEEESSTCTT--S--E---------EEETEEEEEEEEE-TTHHHHHHHHHHHCEEEEE-SS-HHHHHHH
T ss_pred             CEEEEeCCCcEEEEeecCCCC-cc--c---------ceeccccceeEeeCchHHHHHHHHHHhceEEEEEeehhhhhhHH
Confidence            689999999999999765321 00  0         00011127899999999999999999999999999999999999


Q ss_pred             HHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCCCCc
Q 040058          149 VKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSY  225 (326)
Q Consensus       149 ~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~~s~  225 (326)
                      ++.|||++.+|.+ +++|++|..   .+.|||++++++++++|||||++.+|..+++|+|+|++|.              
T Consensus        69 ~~~ldp~~~~~~~-~~~r~~~~~~~~~~~KdL~~l~~~~~~vvivDD~~~~~~~~~~N~i~v~~f~--------------  133 (159)
T PF03031_consen   69 LDALDPNGKLFSR-RLYRDDCTFDKGSYIKDLSKLGRDLDNVVIVDDSPRKWALQPDNGIPVPPFF--------------  133 (159)
T ss_dssp             HHHHTTTTSSEEE-EEEGGGSEEETTEEE--GGGSSS-GGGEEEEES-GGGGTTSGGGEEE----S--------------
T ss_pred             HHhhhhhcccccc-ccccccccccccccccchHHHhhccccEEEEeCCHHHeeccCCceEEecccc--------------
Confidence            9999999899975 556998852   3579999999999999999999999998899999999997              


Q ss_pred             cccccCCC-ccHHHHHHHHHHHHHHHHHhcCCCCCcHH
Q 040058          226 SETLTDES-ENEEALANVLRVLKTIHRLFFDSVCGDVR  262 (326)
Q Consensus       226 ~e~~~d~~-~~D~~L~~l~~~L~~ih~~ff~~~~~DVr  262 (326)
                            .+ .+|++|..|+++|+.+++.      +|||
T Consensus       134 ------~~~~~D~~L~~l~~~L~~l~~~------~Dvr  159 (159)
T PF03031_consen  134 ------GDTPNDRELLRLLPFLEELAKE------DDVR  159 (159)
T ss_dssp             ------SCHTT--HHHHHHHHHHHHHTH------S-CH
T ss_pred             ------CCCcchhHHHHHHHHHHHhCcc------cCCC
Confidence                  13 6799999999999999965      8887

It is found in proteins of diverse function including phosphatases some of which may be active in active in ternary elongation complexes and a number of NLI interacting factors. In the phospatases this domain is often present N-terminal to the BRCT domain (IPR001357 from INTERPRO).; GO: 0005515 protein binding; PDB: 3L0Y_A 2GHQ_A 3PGL_A 3L0C_B 1TA0_A 2GHT_A 3L0B_B 1T9Z_A 3QLE_A 2Q5E_E ....

>TIGR02245 HAD_IIID1 HAD-superfamily subfamily IIID hydrolase, TIGR02245

Probab=99.97  E-value=5.7e-30  Score=229.60  Aligned_cols=156  Identities=21%  Similarity=0.277  Sum_probs=125.5

Q ss_pred             ccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHH
Q 040058           65 EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCY  144 (326)
Q Consensus        65 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~Y  144 (326)
                      ..+|++|||||||||||+.....                        ..++.+|||+++||+.+++.|||+|||++++.|
T Consensus        18 ~~~kklLVLDLDeTLvh~~~~~~------------------------~~~~~kRP~l~eFL~~~~~~feIvVwTAa~~~y   73 (195)
T TIGR02245        18 REGKKLLVLDIDYTLFDHRSPAE------------------------TGEELMRPYLHEFLTSAYEDYDIVIWSATSMKW   73 (195)
T ss_pred             CCCCcEEEEeCCCceEcccccCC------------------------CceEEeCCCHHHHHHHHHhCCEEEEEecCCHHH
Confidence            37889999999999999853210                        235789999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCc-cccceEEeecCCC---------CC-ccccCCCC----C--CCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDLDSK-YFSSRIIAREDFN---------GK-DRKNPDLV----R--GQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP~~~-~F~~Ri~sRd~~~---------~~-~~KdL~~l----~--~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      |+++++.|++.+. -|.-+.+ ++.|.         +. ++|+|+.+    +  .+++++|||||++.++..||+|+|+|
T Consensus        74 a~~~l~~l~~~~~~~~~i~~~-ld~~~~~~~~~~~~g~~~vKdL~~lw~~l~~~~~~~ntiiVDd~p~~~~~~P~N~i~I  152 (195)
T TIGR02245        74 IEIKMTELGVLTNPNYKITFL-LDSTAMITVHTPRRGKFDVKPLGVIWALLPEFYSMKNTIMFDDLRRNFLMNPQNGLKI  152 (195)
T ss_pred             HHHHHHHhcccCCccceEEEE-eccccceeeEeeccCcEEEeecHHhhhhcccCCCcccEEEEeCCHHHHhcCCCCcccc
Confidence            9999999976432 2332232 55552         12 58999976    3  37899999999999999999999999


Q ss_pred             CccccccccccCCCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 040058          208 GKYVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPK  267 (326)
Q Consensus       208 ~~y~~f~~~~~~~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~  267 (326)
                      +||..-.                .++.+|.+|..|+++|+.|+.      ..|||+++..
T Consensus       153 ~~f~~~~----------------~~~~~D~eL~~L~~yL~~la~------~~Dvr~~~~~  190 (195)
T TIGR02245       153 RPFKKAH----------------ANRGTDQELLKLTQYLKTIAE------LEDFSSLDHK  190 (195)
T ss_pred             CCccccC----------------CCCcccHHHHHHHHHHHHHhc------Ccccchhhhc
Confidence            9997110                025789999999999999997      4999999874

This family of sequences appears to belong to the Haloacid Dehalogenase (HAD) superfamily of enzymes by virtue of the presence of three catalytic domains, in this case: LLVLD(ILV)D(YH)T, I(VMG)IWS, and (DN)(VC)K(PA)Lx{15-17}T(IL)(MH)(FV)DD(IL)(GRS)(RK)N. Since this family has no large "cap" domain between motifs 1 and 2 or between 2 and 3, it is formally a "class III" HAD.

>smart00577 CPDc catalytic domain of ctd-like phosphatases

Probab=99.92  E-value=1.5e-24  Score=186.35  Aligned_cols=141  Identities=29%  Similarity=0.374  Sum_probs=112.7

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      ||++|||||||||||+...+.. ++.+    .. +.....+.. +..+++++|||+.+||+++++.|++.|+|++.+.||
T Consensus         1 ~k~~lvldld~tl~~~~~~~~~-~~~~----~~-~~~~~~~~~~~~~~~v~l~pG~~e~L~~L~~~~~l~I~Ts~~~~~~   74 (148)
T smart00577        1 KKKTLVLDLDETLVHSTHRSFK-EWTN----RD-FIVPVLIDGHPHGVYVKKRPGVDEFLKRASELFELVVFTAGLRMYA   74 (148)
T ss_pred             CCcEEEEeCCCCeECCCCCcCC-CCCc----cc-eEEEEEeCCceEEEEEEECCCHHHHHHHHHhccEEEEEeCCcHHHH
Confidence            6999999999999999753321 1110    00 000000111 128899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcccccc
Q 040058          146 EAAVKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFR  214 (326)
Q Consensus       146 ~~v~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~  214 (326)
                      +.+++.+|+.+.+|. +|++++++..   .+.|+|++++.+++.+|+|||++..|..++.|+|.|+||.++.
T Consensus        75 ~~il~~l~~~~~~f~-~i~~~~d~~~~KP~~~k~l~~l~~~p~~~i~i~Ds~~~~~aa~~ngI~i~~f~~~~  145 (148)
T smart00577       75 DPVLDLLDPKKYFGY-RRLFRDECVFVKGKYVKDLSLLGRDLSNVIIIDDSPDSWPFHPENLIPIKPWFGDP  145 (148)
T ss_pred             HHHHHHhCcCCCEee-eEEECccccccCCeEeecHHHcCCChhcEEEEECCHHHhhcCccCEEEecCcCCCC
Confidence            999999999754454 7999998863   4889999999999999999999999999999999999999543

>KOG2832 consensus TFIIF-interacting CTD phosphatase, including NLI-interacting factor (involved in RNA polymerase II regulation) [Transcription]

Probab=99.92  E-value=5.8e-25  Score=209.19  Aligned_cols=159  Identities=21%  Similarity=0.284  Sum_probs=143.8

Q ss_pred             ccccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcH
Q 040058           63 EQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTR  142 (326)
Q Consensus        63 ~~~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~  142 (326)
                      +.++.++||||||.++|||..+.-.                       .++.+++|||++.||..++++|||+|||....
T Consensus       184 Py~Qp~yTLVleledvLVhpdws~~-----------------------tGwRf~kRPgvD~FL~~~a~~yEIVi~sse~g  240 (393)
T KOG2832|consen  184 PYEQPPYTLVLELEDVLVHPDWSYK-----------------------TGWRFKKRPGVDYFLGHLAKYYEIVVYSSEQG  240 (393)
T ss_pred             cccCCCceEEEEeeeeEeccchhhh-----------------------cCceeccCchHHHHHHhhcccceEEEEecCCc
Confidence            4449999999999999999975421                       14467999999999999999999999999999


Q ss_pred             HHHHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccC
Q 040058          143 CYAEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELN  219 (326)
Q Consensus       143 ~YA~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~  219 (326)
                      .||.++++.|||.| ++++|++ |+.+.   +.++|||+.|+||+++||+||-++.....||+|.|.++||.        
T Consensus       241 mt~~pl~d~lDP~g-~IsYkLf-r~~t~y~~G~HvKdls~LNRdl~kVivVd~d~~~~~l~P~N~l~l~~W~--------  310 (393)
T KOG2832|consen  241 MTVFPLLDALDPKG-YISYKLF-RGATKYEEGHHVKDLSKLNRDLQKVIVVDFDANSYKLQPENMLPLEPWS--------  310 (393)
T ss_pred             cchhhhHhhcCCcc-eEEEEEe-cCcccccCccchhhhhhhccccceeEEEEccccccccCcccccccCcCC--------
Confidence            99999999999995 6788998 88876   46899999999999999999999999999999999999998        


Q ss_pred             CCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHhc
Q 040058          220 GDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRS  270 (326)
Q Consensus       220 ~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~r~  270 (326)
                                  .+++|+.|.+|+++|+.||+.    +..|||++|+.+.+
T Consensus       311 ------------Gn~dDt~L~dL~~FL~~ia~~----~~eDvR~vL~~y~~  345 (393)
T KOG2832|consen  311 ------------GNDDDTSLFDLLAFLEYIAQQ----QVEDVRPVLQSYSQ  345 (393)
T ss_pred             ------------CCcccchhhhHHHHHHHHHHc----cHHHHHHHHHHhcc
Confidence                        368899999999999999987    77999999999876

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.83  E-value=6.2e-21  Score=185.81  Aligned_cols=169  Identities=27%  Similarity=0.388  Sum_probs=141.9

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      ..+.+|++|||+||+||..... .. ..++.. .     ..-.....+||..||++.+||..++++|++++||++.+.||
T Consensus       210 ~~~k~L~l~lde~l~~S~~~~~-~~-~df~~~-~-----e~~~~~~~~~v~kRp~l~~fl~~ls~~~~l~~ft~s~~~y~  281 (390)
T COG5190         210 SPKKTLVLDLDETLVHSSFRYI-TL-LDFLVK-V-----EISLLQHLVYVSKRPELDYFLGKLSKIHELVYFTASVKRYA  281 (390)
T ss_pred             CCccccccCCCccceeeccccc-cc-cchhhc-c-----ccccceeEEEEcCChHHHHHHhhhhhhEEEEEEecchhhhc
Confidence            8889999999999999986542 11 111100 0     00012238899999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCC
Q 040058          146 EAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH  222 (326)
Q Consensus       146 ~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~  222 (326)
                      ++|+++||+.+ .|++|+| |..|.   +.|+|||..++++...++|||++|..|..++.|+|++.+|.           
T Consensus       282 ~~v~d~l~~~k-~~~~~lf-r~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~~i~i~~W~-----------  348 (390)
T COG5190         282 DPVLDILDSDK-VFSHRLF-RESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPENAIPIEKWI-----------  348 (390)
T ss_pred             chHHHhccccc-eeehhhh-cccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccceeccCccc-----------
Confidence            99999999997 7888888 88886   35899999999999999999999999999999999999998           


Q ss_pred             CCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHH
Q 040058          223 KSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKV  268 (326)
Q Consensus       223 ~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~  268 (326)
                               +++.|.+|.+++++|..|...    +..||+.++...
T Consensus       349 ---------~d~~d~el~~ll~~le~L~~~----~~~d~~~~l~~~  381 (390)
T COG5190         349 ---------SDEHDDELLNLLPFLEDLPDR----DLKDVSSILQSR  381 (390)
T ss_pred             ---------ccccchhhhhhcccccccccc----cchhhhhhhhhh
Confidence                     257899999999999999875    568999888753

>COG5190 FCP1 TFIIF-interacting CTD phosphatases, including NLI-interacting factor [Transcription]

Probab=99.73  E-value=2.2e-18  Score=168.04  Aligned_cols=243  Identities=23%  Similarity=0.343  Sum_probs=180.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchh-hhcccccccc-ceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKY-LKKQIHSFIG-SLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~-l~~~~~~~~~-~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~  143 (326)
                      ++++.||+|+|+|.+||+.++..+...+. +.....+... ..-..+.+++++.||++..|+...++.||+++||||++.
T Consensus        24 ~~~~~l~~~~~~~~~h~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~l~~~~~~i~~~~e~~~~~~~~~~  103 (390)
T COG5190          24 DKKLILVVDLDQTIIHTTVDPNDPNNVNQSLERTLKSVNDRDPVQEKCAYYVKARPKLFPFLTKISPLYELHIYTMGTRA  103 (390)
T ss_pred             CcccccccccccceecccccCCCCCchhhhhhccccchhccccccccccceeeecccccchhhhhchhcceeeEeecccc
Confidence            88999999999999999998843333221 1111111101 001112289999999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCCCCccccCCC-CCCCCCcEEEEeCCchhh---ccCCCCeEEeCccccccccc-c
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDL-VRGQERGIVILDDTESVW---SDHTENLIVLGKYVYFRDKE-L  218 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~-l~~~~~~vvIvDD~~~vw---~~~~~N~I~I~~y~~f~~~~-~  218 (326)
                      ||+.+++++||.|.+|.+|+.+|++.....+|.+++ ++.+.++++|+||++++|   .. -.|.+...++..+...- +
T Consensus       104 ~~~~~~~i~d~~g~~~~d~~~~~~~~~~~~~~s~~~l~p~~~n~~vi~~d~~~~~~~~d~-~~~~v~~~~~~~~~~~~~i  182 (390)
T COG5190         104 YAERIAKIIDPTGKLFNDRILSRDESGSLSQKSLSRLFPKDQNMVVIIDDRGDVWGVGDM-NSNFVAKSPFSKYESDKDI  182 (390)
T ss_pred             chhhhhhcccccccccccccccccccccchhhhhhhcCccccccccccccccccCCccch-hhhhhcccccccccccccc
Confidence            999999999999999999999999999988999997 568999999999999999   44 46888888854333221 1


Q ss_pred             CC----C-------C-----CCcc--------------c----------------cccCCC--------ccHHHHHHHHH
Q 040058          219 NG----D-------H-----KSYS--------------E----------------TLTDES--------ENEEALANVLR  244 (326)
Q Consensus       219 ~~----~-------~-----~s~~--------------e----------------~~~d~~--------~~D~~L~~l~~  244 (326)
                      ..    .       +     ..+.              |                ...+.+        ..+.+|..++.
T Consensus       183 ~d~~~~~~~~~r~~~~~~l~~~~~~~~~~~k~L~l~lde~l~~S~~~~~~~~df~~~~e~~~~~~~~~v~kRp~l~~fl~  262 (390)
T COG5190         183 VDLPRLERKLSREAGIDTLEPPVSKSTSPKKTLVLDLDETLVHSSFRYITLLDFLVKVEISLLQHLVYVSKRPELDYFLG  262 (390)
T ss_pred             cCcccccchhhhhcccccccchhhcCCCCccccccCCCccceeeccccccccchhhccccccceeEEEEcCChHHHHHHh
Confidence            10    0       0     0000              0                001112        56899999999


Q ss_pred             HHHHHHHHhcCC-----CCCcHHHHHHHHhccC-CCcEEEEcCccch-H----HHHHHH------------HHHhhhCCc
Q 040058          245 VLKTIHRLFFDS-----VCGDVRTYLPKVRSEF-SRDVLYFSAIFRD-C----LWAEQE------------EKFLVQEKK  301 (326)
Q Consensus       245 ~L~~ih~~ff~~-----~~~DVr~il~~~r~~v-~g~~ivfs~~~p~-~----~~~~ae------------a~~a~~~~~  301 (326)
                      .|.++|..+|..     ....|..+|...+  + ++|.+.++++++. .    |.+.+.            +-|+.....
T Consensus       263 ~ls~~~~l~~ft~s~~~y~~~v~d~l~~~k--~~~~~lfr~sc~~~~G~~ikDis~i~r~l~~viiId~~p~SY~~~p~~  340 (390)
T COG5190         263 KLSKIHELVYFTASVKRYADPVLDILDSDK--VFSHRLFRESCVSYLGVYIKDISKIGRSLDKVIIIDNSPASYEFHPEN  340 (390)
T ss_pred             hhhhhEEEEEEecchhhhcchHHHhccccc--eeehhhhcccceeccCchhhhHHhhccCCCceEEeeCChhhhhhCccc
Confidence            999999887776     2345888888888  7 9999999999998 2    222222            457777778


Q ss_pred             eEEchHHHHH
Q 040058          302 FLVHPRWIDA  311 (326)
Q Consensus       302 ~vV~p~Wl~~  311 (326)
                      .||.|.|+.+
T Consensus       341 ~i~i~~W~~d  350 (390)
T COG5190         341 AIPIEKWISD  350 (390)
T ss_pred             eeccCccccc
Confidence            9999999997

>TIGR01681 HAD-SF-IIIC HAD-superfamily phosphatase, subfamily IIIC

Probab=98.44  E-value=1.2e-07  Score=79.44  Aligned_cols=107  Identities=17%  Similarity=0.170  Sum_probs=73.2

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCC-cHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMS-TRCYAEA  147 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g-~~~YA~~  147 (326)
                      .||+|||+||+...... .+...     -+.        .  .   ++.||+.++|+.+.+ .+.+.|.|++ .+.++..
T Consensus         2 li~~DlD~Tl~~~~~~~-~~~~~-----~~~--------~--~---~~~~gv~e~L~~Lk~~g~~l~i~Sn~~~~~~~~~   62 (128)
T TIGR01681         2 VIVFDLDNTLWTGENIV-VGEDP-----IID--------L--E---VTIKEIRDKLQTLKKNGFLLALASYNDDPHVAYE   62 (128)
T ss_pred             EEEEeCCCCCCCCCccc-ccCCc-----chh--------h--H---HHHHHHHHHHHHHHHCCeEEEEEeCCCCHHHHHH
Confidence            58999999999873210 00000     000        0  1   588999999999976 4999999999 9999999


Q ss_pred             HHHHhCC------CCccccceEEeecCCCC--CccccCCCCC--CCCCcEEEEeCCchh
Q 040058          148 AVKLLDL------DSKYFSSRIIAREDFNG--KDRKNPDLVR--GQERGIVILDDTESV  196 (326)
Q Consensus       148 v~~~LDP------~~~~F~~Ri~sRd~~~~--~~~KdL~~l~--~~~~~vvIvDD~~~v  196 (326)
                      +++...+      -..+|.. +++.++.+.  .+.+-+++++  ..++.+++|||++..
T Consensus        63 ~l~~~~~~~~i~~l~~~f~~-~~~~~~~pkp~~~~~a~~~lg~~~~p~~~l~igDs~~n  120 (128)
T TIGR01681        63 LLKIFEDFGIIFPLAEYFDP-LTIGYWLPKSPRLVEIALKLNGVLKPKSILFVDDRPDN  120 (128)
T ss_pred             HHHhccccccchhhHhhhhh-hhhcCCCcHHHHHHHHHHHhcCCCCcceEEEECCCHhH
Confidence            9998762      1245654 333333221  2455566678  889999999999854

No member of this subfamily is characterized with respect to function, however the MDP-1 protein is a characterized phosphatase. All of the characterized enzymes within subfamily III are phosphatases, and all of the active site residues characteristic of HAD-superfamily phosphatases are present in subfamily IIIC.

>TIGR01685 MDP-1 magnesium-dependent phosphatase-1

Probab=98.33  E-value=1.2e-06  Score=77.63  Aligned_cols=134  Identities=16%  Similarity=0.071  Sum_probs=85.8

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-cHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS-TRCYAE  146 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g-~~~YA~  146 (326)
                      ..+|+|||.||+......-..+. ....++..   ..+-.. ...-+.++||+.++|+.+.+. +.+.|.|++ .+.+++
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~-~~~~~~l~pGv~elL~~Lk~~G~~l~I~Sn~~~~~~~~   77 (174)
T TIGR01685         3 RVIVFDLDGTLWDHYMISLLGGP-FKPVKQNN---SIIIDK-SGTEVTLIKEVRDVLQTLKDAGTYLATASWNDVPEWAY   77 (174)
T ss_pred             cEEEEeCCCCCcCcccccccCCC-ceeccCCC---CeEEeC-CCCEEEEcccHHHHHHHHHHCCCEEEEEeCCCChHHHH
Confidence            46899999999987654321110 00111111   111111 134578999999999999755 999999988 999999


Q ss_pred             HHHHHhCCC--C------ccccceEEeecCCCC-C----ccccCCC-C--CCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058          147 AAVKLLDLD--S------KYFSSRIIAREDFNG-K----DRKNPDL-V--RGQERGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       147 ~v~~~LDP~--~------~~F~~Ri~sRd~~~~-~----~~KdL~~-l--~~~~~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      .+++.++..  |      .+|.. +++-++... .    ..+.+.. +  +-+++.+++|||++.-......+++.+-
T Consensus        78 ~~L~~~~l~~~~~~~~~~~~Fd~-iv~~~~~~~~kp~~~i~~~~~~~~~~gl~p~e~l~VgDs~~di~aA~~aGi~~i  154 (174)
T TIGR01685        78 EILGTFEITYAGKTVPMHSLFDD-RIEIYKPNKAKQLEMILQKVNKVDPSVLKPAQILFFDDRTDNVREVWGYGVTSC  154 (174)
T ss_pred             HHHHhCCcCCCCCcccHHHhcee-eeeccCCchHHHHHHHHHHhhhcccCCCCHHHeEEEcChhHhHHHHHHhCCEEE
Confidence            999998854  2      57875 554444321 1    1122222 2  4678999999999977665556666553

This model represents two closely related clades of sequences from eukaryotes and archaea. The mouse enzyme has been characterized as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues.

>TIGR01993 Pyr-5-nucltdase pyrimidine 5'-nucleotidase

Probab=98.27  E-value=3.5e-07  Score=80.36  Aligned_cols=87  Identities=17%  Similarity=0.160  Sum_probs=65.4

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC----------CccccCCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG----------KDRKNPDLVRGQE  184 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~~~KdL~~l~~~~  184 (326)
                      ++..||+.++|+++.  +.++|.|++.+.++..+++.++-. .+|.. +++.++...          .+.+-+++++.++
T Consensus        83 ~~~~~g~~~~L~~L~--~~~~i~Tn~~~~~~~~~l~~~gl~-~~fd~-i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~  158 (184)
T TIGR01993        83 LKPDPELRNLLLRLP--GRKIIFTNGDRAHARRALNRLGIE-DCFDG-IFCFDTANPDYLLPKPSPQAYEKALREAGVDP  158 (184)
T ss_pred             CCCCHHHHHHHHhCC--CCEEEEeCCCHHHHHHHHHHcCcH-hhhCe-EEEeecccCccCCCCCCHHHHHHHHHHhCCCc
Confidence            457899999999998  689999999999999999998865 58874 776665542          1334455677888


Q ss_pred             CcEEEEeCCchhhccCCCCeE
Q 040058          185 RGIVILDDTESVWSDHTENLI  205 (326)
Q Consensus       185 ~~vvIvDD~~~vw~~~~~N~I  205 (326)
                      +.+++|+|++.-......+++
T Consensus       159 ~~~l~vgD~~~di~aA~~~G~  179 (184)
T TIGR01993       159 ERAIFFDDSARNIAAAKALGM  179 (184)
T ss_pred             cceEEEeCCHHHHHHHHHcCC
Confidence            999999999854332233443

These enzymes are members of the haloacid dehalogenase (HAD) superfamily of hydrolases, specifically the IA subfamily (variant 3, TIGR01509).

>TIGR01684 viral_ppase viral phosphatase

Probab=98.17  E-value=4.7e-06  Score=79.31  Aligned_cols=73  Identities=25%  Similarity=0.341  Sum_probs=62.4

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeC-ccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLR-PFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklR-Pgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      +.+..+|+||||||+.....                             +.+| ||+.+.|+++.+. +.+.|+|++.+.
T Consensus       124 ~~~kvIvFDLDgTLi~~~~~-----------------------------v~irdPgV~EaL~~LkekGikLaIaTS~~Re  174 (301)
T TIGR01684       124 EPPHVVVFDLDSTLITDEEP-----------------------------VRIRDPRIYDSLTELKKRGCILVLWSYGDRD  174 (301)
T ss_pred             ccceEEEEecCCCCcCCCCc-----------------------------cccCCHHHHHHHHHHHHCCCEEEEEECCCHH
Confidence            77789999999999988521                             3588 9999999999987 899999999999


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCC
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDF  169 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~  169 (326)
                      +|..+++.++.. .+|. .|++.++.
T Consensus       175 ~v~~~L~~lGLd-~YFd-vIIs~Gdv  198 (301)
T TIGR01684       175 HVVESMRKVKLD-RYFD-IIISGGHK  198 (301)
T ss_pred             HHHHHHHHcCCC-cccC-EEEECCcc
Confidence            999999999998 5785 57765554

These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.

>PRK13288 pyrophosphatase PpaX; Provisional

Probab=98.16  E-value=6e-07  Score=80.77  Aligned_cols=91  Identities=19%  Similarity=0.168  Sum_probs=70.6

Q ss_pred             EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+++.||+.++|+.+++ .+.+.|.|++.+.++..+++.++-. .||. .+++.++...      .+.+-++.++.+++.
T Consensus        80 ~~~~~~g~~~~l~~L~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~  157 (214)
T PRK13288         80 LVTEYETVYETLKTLKKQGYKLGIVTTKMRDTVEMGLKLTGLD-EFFD-VVITLDDVEHAKPDPEPVLKALELLGAKPEE  157 (214)
T ss_pred             hcccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hcee-EEEecCcCCCCCCCcHHHHHHHHHcCCCHHH
Confidence            46789999999999976 4999999999999999999999877 6787 4877666542      134455566777899


Q ss_pred             EEEEeCCchhhccCCCCeEE
Q 040058          187 IVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~  206 (326)
                      +++|+|++.-......+++.
T Consensus       158 ~~~iGDs~~Di~aa~~aG~~  177 (214)
T PRK13288        158 ALMVGDNHHDILAGKNAGTK  177 (214)
T ss_pred             EEEECCCHHHHHHHHHCCCe
Confidence            99999998655433445554

>TIGR01686 FkbH FkbH-like domain

Probab=98.14  E-value=2.5e-06  Score=82.18  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=74.1

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA  145 (326)
                      .+++||+|||+||+....-..-..+       +             ......||+.++|+.+.+. +.+.|.|+..+..|
T Consensus         2 ~~k~~v~DlDnTlw~gv~~e~g~~~-------i-------------~~~~~~~~~~e~L~~L~~~Gi~lai~S~n~~~~a   61 (320)
T TIGR01686         2 ALKVLVLDLDNTLWGGVLGEDGIDN-------L-------------NLSPLHKTLQEKIKTLKKQGFLLALASKNDEDDA   61 (320)
T ss_pred             CeEEEEEcCCCCCCCCEEccCCccc-------c-------------ccCccHHHHHHHHHHHHhCCCEEEEEcCCCHHHH
Confidence            4789999999999976532210000       0             0123579999999999866 99999999999999


Q ss_pred             HHHHHH----hCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058          146 EAAVKL----LDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       146 ~~v~~~----LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      ..+++.    +... .+|..-..+...-.....+-++.++-+++.+|+|||++.
T Consensus        62 ~~~l~~~~~~~~~~-~~f~~~~~~~~pk~~~i~~~~~~l~i~~~~~vfidD~~~  114 (320)
T TIGR01686        62 KKVFERRKDFILQA-EDFDARSINWGPKSESLRKIAKKLNLGTDSFLFIDDNPA  114 (320)
T ss_pred             HHHHHhCccccCcH-HHeeEEEEecCchHHHHHHHHHHhCCCcCcEEEECCCHH
Confidence            999987    5554 467632222111111233445567788899999999984

The C-terminal portion of this domain is unique to this family (by BLAST).

>PLN02575 haloacid dehalogenase-like hydrolase

Probab=98.13  E-value=7.5e-07  Score=87.90  Aligned_cols=89  Identities=16%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.+||+.+.+. +.+.|.|++.+.+++.+++.++-. .||. .|++.++...      .+.+-+++++.+++.+
T Consensus       215 ~~l~pGa~ElL~~Lk~~GiklaIaSn~~~~~~~~~L~~lgL~-~yFd-~Iv~sddv~~~KP~Peifl~A~~~lgl~Peec  292 (381)
T PLN02575        215 YRLRTGSQEFVNVLMNYKIPMALVSTRPRKTLENAIGSIGIR-GFFS-VIVAAEDVYRGKPDPEMFIYAAQLLNFIPERC  292 (381)
T ss_pred             CCcCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCH-HHce-EEEecCcCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            46789999999999765 999999999999999999999876 6897 5887777642      2455667788889999


Q ss_pred             EEEeCCchhhccCCCCeE
Q 040058          188 VILDDTESVWSDHTENLI  205 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I  205 (326)
                      |+|+|+..-......+++
T Consensus       293 l~IGDS~~DIeAAk~AGm  310 (381)
T PLN02575        293 IVFGNSNQTVEAAHDARM  310 (381)
T ss_pred             EEEcCCHHHHHHHHHcCC
Confidence            999999865543334444

>COG4996 Predicted phosphatase [General function prediction only]

Probab=98.13  E-value=1.4e-05  Score=67.39  Aligned_cols=131  Identities=25%  Similarity=0.289  Sum_probs=89.5

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+|||+|+||++....+++.+.-.    .+.+  +.+ +-..+.-|.++|++.+||+++..- |-+..+|.....-|-++
T Consensus         2 ~i~~d~d~t~wdhh~iSsl~pPf~----rVs~--n~i-~Ds~G~ev~L~~~v~~~l~warnsG~i~~~~sWN~~~kA~~a   74 (164)
T COG4996           2 AIVFDADKTLWDHHNISSLEPPFR----RVSS--NTI-EDSKGREVHLFPDVKETLKWARNSGYILGLASWNFEDKAIKA   74 (164)
T ss_pred             cEEEeCCCcccccccchhcCCcce----ecCc--cce-ecCCCeEEEEcHHHHHHHHHHHhCCcEEEEeecCchHHHHHH
Confidence            579999999998776554432210    1111  000 111267789999999999999866 99999999999999999


Q ss_pred             HHHhCCCCccccceEEeecCCCC---CccccCCCC------CCCCCcEEEEeCCc----hhhccCCCCeEEeCccc
Q 040058          149 VKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLV------RGQERGIVILDDTE----SVWSDHTENLIVLGKYV  211 (326)
Q Consensus       149 ~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l------~~~~~~vvIvDD~~----~vw~~~~~N~I~I~~y~  211 (326)
                      ++.||.. .||..-++  +-.+.   +..+-|..+      .-.++++|.+|||.    +.|. +-+|+=-++.|.
T Consensus        75 Lral~~~-~yFhy~Vi--ePhP~K~~ML~~llr~i~~er~~~ikP~~Ivy~DDR~iH~~~Iwe-~~G~V~~~~~~~  146 (164)
T COG4996          75 LRALDLL-QYFHYIVI--EPHPYKFLMLSQLLREINTERNQKIKPSEIVYLDDRRIHFGNIWE-YLGNVKCLEMWK  146 (164)
T ss_pred             HHHhchh-hhEEEEEe--cCCChhHHHHHHHHHHHHHhhccccCcceEEEEecccccHHHHHH-hcCCeeeeEeec
Confidence            9999999 78986444  22221   112222222      23578999999998    5675 367777777665

>PRK14988 GMP/IMP nucleotidase; Provisional

Probab=98.12  E-value=1.2e-06  Score=80.16  Aligned_cols=90  Identities=16%  Similarity=0.111  Sum_probs=70.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|-|++.+.++...++.++-. .+|.. +++.++...      .+.+-+++++.+++.+
T Consensus        92 ~~~~~g~~e~L~~Lk~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-iv~s~~~~~~KP~p~~~~~~~~~~~~~p~~~  169 (224)
T PRK14988         92 AVLREDTVPFLEALKASGKRRILLTNAHPHNLAVKLEHTGLD-AHLDL-LLSTHTFGYPKEDQRLWQAVAEHTGLKAERT  169 (224)
T ss_pred             CCcCCCHHHHHHHHHhCCCeEEEEeCcCHHHHHHHHHHCCcH-HHCCE-EEEeeeCCCCCCCHHHHHHHHHHcCCChHHE
Confidence            67899999999999875 999999999999999999987765 57875 665565542      1344566778889999


Q ss_pred             EEEeCCchhhccCCCCeEE
Q 040058          188 VILDDTESVWSDHTENLIV  206 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I~  206 (326)
                      ++|+|++.-......+++.
T Consensus       170 l~igDs~~di~aA~~aG~~  188 (224)
T PRK14988        170 LFIDDSEPILDAAAQFGIR  188 (224)
T ss_pred             EEEcCCHHHHHHHHHcCCe
Confidence            9999998655444556664

>cd01427 HAD_like Haloacid dehalogenase-like hydrolases

Probab=98.12  E-value=3.2e-06  Score=68.28  Aligned_cols=101  Identities=20%  Similarity=0.223  Sum_probs=70.3

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      ++|||+||||+........                       .....++|++.++|+.+.+. +.++|.|++.+.++..+
T Consensus         1 ~~vfD~D~tl~~~~~~~~~-----------------------~~~~~~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~   57 (139)
T cd01427           1 AVLFDLDGTLLDSEPGIAE-----------------------IEELELYPGVKEALKELKEKGIKLALATNKSRREVLEL   57 (139)
T ss_pred             CeEEccCCceEccCccccc-----------------------cccCCcCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHH
Confidence            4899999999988743210                       11347999999999999987 99999999999999999


Q ss_pred             HHHhCCCCccccceEEeecCCCCC----------------------ccccCCCCCCCCCcEEEEeCCch
Q 040058          149 VKLLDLDSKYFSSRIIAREDFNGK----------------------DRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       149 ~~~LDP~~~~F~~Ri~sRd~~~~~----------------------~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      ++.+... .+|. .+++.+.....                      +..-++.++...+.++.+||+..
T Consensus        58 ~~~~~~~-~~~~-~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~igD~~~  124 (139)
T cd01427          58 LEELGLD-DYFD-PVITSNGAAIYYPKEGLFLGGGPFDIGKPNPDKLLAALKLLGVDPEEVLMVGDSLN  124 (139)
T ss_pred             HHHcCCc-hhhh-heeccchhhhhcccccccccccccccCCCCHHHHHHHHHHcCCChhhEEEeCCCHH
Confidence            9987654 2344 45544433210                      01112223445678999999874

The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.

>PHA03398 viral phosphatase superfamily protein; Provisional

Probab=98.08  E-value=1.6e-05  Score=75.77  Aligned_cols=74  Identities=27%  Similarity=0.351  Sum_probs=62.5

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeC-ccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLR-PFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklR-Pgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      +.+..+|+||||||+.+...                             +.+| |++.+.|+++.+. +.+.|+|+|.++
T Consensus       126 ~~~~~i~~D~D~TL~~~~~~-----------------------------v~irdp~V~EtL~eLkekGikLaIvTNg~Re  176 (303)
T PHA03398        126 EIPHVIVFDLDSTLITDEEP-----------------------------VRIRDPFVYDSLDELKERGCVLVLWSYGNRE  176 (303)
T ss_pred             eeccEEEEecCCCccCCCCc-----------------------------cccCChhHHHHHHHHHHCCCEEEEEcCCChH
Confidence            77889999999999988521                             3588 9999999999986 999999999999


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCC
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFN  170 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~  170 (326)
                      +|..+++.++.. .+|. -+++.++..
T Consensus       177 ~v~~~Le~lgL~-~yFD-vII~~g~i~  201 (303)
T PHA03398        177 HVVHSLKETKLE-GYFD-IIICGGRKA  201 (303)
T ss_pred             HHHHHHHHcCCC-cccc-EEEECCCcc
Confidence            999999999987 6775 466655544

>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA

Probab=98.02  E-value=1.5e-05  Score=66.23  Aligned_cols=97  Identities=15%  Similarity=0.051  Sum_probs=67.5

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-------
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-------  141 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-------  141 (326)
                      .|+||+||||++..  .....+                     -...+.||+.++|+.+.+. +.+.|.|++.       
T Consensus         2 ~~~~D~dgtL~~~~--~~~~~~---------------------~~~~~~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~   58 (132)
T TIGR01662         2 GVVLDLDGTLTDDV--PYVDDE---------------------DERILYPEVPDALAELKEAGYKVVIVTNQSGIGRGKF   58 (132)
T ss_pred             EEEEeCCCceecCC--CCCCCH---------------------HHheeCCCHHHHHHHHHHCCCEEEEEECCccccccHH
Confidence            68999999999642  111111                     1236899999999999765 9999999999       


Q ss_pred             -HHHHHHHHHHhCCCCccccceEEeecCCCC----CccccCCCC-CCCCCcEEEEeCC
Q 040058          142 -RCYAEAAVKLLDLDSKYFSSRIIAREDFNG----KDRKNPDLV-RGQERGIVILDDT  193 (326)
Q Consensus       142 -~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----~~~KdL~~l-~~~~~~vvIvDD~  193 (326)
                       ..++.++++.++..  .+.  +++......    .+.+-++++ +.+++.+++|+|+
T Consensus        59 ~~~~~~~~l~~~~l~--~~~--~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~v~IGD~  112 (132)
T TIGR01662        59 SSGRVARRLEELGVP--IDV--LYACPHCRKPKPGMFLEALKRFNEIDPEESVYVGDQ  112 (132)
T ss_pred             HHHHHHHHHHHCCCC--EEE--EEECCCCCCCChHHHHHHHHHcCCCChhheEEEcCC
Confidence             88899999988764  222  222221111    234445667 4788999999994

In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.

>TIGR01656 Histidinol-ppas histidinol-phosphate phosphatase family domain

Probab=98.01  E-value=6.9e-06  Score=70.12  Aligned_cols=106  Identities=10%  Similarity=-0.033  Sum_probs=68.2

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-----
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-----  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-----  142 (326)
                      .+|++|+||||+......-...                     +.-+++.||+.++|+.+.+. |.+.|.|++.+     
T Consensus         1 ~~~~~d~dgtl~~~~~~~~~~~---------------------~~~~~~~~g~~~~l~~Lk~~g~~~~I~Sn~~~~~~~~   59 (147)
T TIGR01656         1 PALFLDRDGVINEDTVSDYPRS---------------------LDDWQLRPGAVPALLTLRAAGYTVVVVTNQSGIGRGY   59 (147)
T ss_pred             CeEEEeCCCceeccCCcccCCC---------------------HHHeEEcCChHHHHHHHHHCCCEEEEEeCCCcccCCc
Confidence            3689999999999875321110                     11136899999999999765 99999999874     


Q ss_pred             ----------HHHHHHHHHhCCCC-ccccceEEeecCCCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058          143 ----------CYAEAAVKLLDLDS-KYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       143 ----------~YA~~v~~~LDP~~-~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                                .++..+++.++..- .+|...+.+.++...      .+.+-+++++.+++.+++|+|++.
T Consensus        60 ~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~i~IGDs~~  129 (147)
T TIGR01656        60 FSAEAFRAPNGRVLELLRQLGVAVDGVLFCPHHPADNCSCRKPKPGLILEALKRLGVDASRSLVVGDRLR  129 (147)
T ss_pred             CCHHHHHHHHHHHHHHHHhCCCceeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCChHHEEEEcCCHH
Confidence                      56777777776541 011111110121111      133344556778899999999864

This domain is a member of the haloacid-dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. This superfamily is distinguished by the presence of three motifs: an N-terminal motif containing the nucleophilic aspartate, a central motif containing an conserved serine or threonine, and a C-terminal motif containing a conserved lysine (or arginine) and conserved aspartates. More specifically, the domian modelled here is a member of subfamily III of the HAD-superfamily by virtue of lacking a "capping" domain in either of the two common positions, between motifs 1 and 2, or between motifs 2 and 3.

>PRK13225 phosphoglycolate phosphatase; Provisional

Probab=97.98  E-value=1.7e-06  Score=81.80  Aligned_cols=91  Identities=16%  Similarity=0.078  Sum_probs=65.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVIL  190 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIv  190 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++...   .+.+-+++++.+++.+++|
T Consensus       141 ~~l~pg~~e~L~~L~~~gi~laIvSn~~~~~~~~~L~~~gl~-~~F~-~vi~~~~~~~k~~~~~~~l~~~~~~p~~~l~I  218 (273)
T PRK13225        141 LQLFPGVADLLAQLRSRSLCLGILSSNSRQNIEAFLQRQGLR-SLFS-VVQAGTPILSKRRALSQLVAREGWQPAAVMYV  218 (273)
T ss_pred             CCcCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCh-hheE-EEEecCCCCCCHHHHHHHHHHhCcChhHEEEE
Confidence            56789999999999755 899999999999999999999876 5787 4665554322   1223334456677899999


Q ss_pred             eCCchhhccCCCCeEEe
Q 040058          191 DDTESVWSDHTENLIVL  207 (326)
Q Consensus       191 DD~~~vw~~~~~N~I~I  207 (326)
                      +|++.-......+++..
T Consensus       219 GDs~~Di~aA~~AG~~~  235 (273)
T PRK13225        219 GDETRDVEAARQVGLIA  235 (273)
T ss_pred             CCCHHHHHHHHHCCCeE
Confidence            99985443333445543

>TIGR03351 PhnX-like phosphonatase-like hydrolase

Probab=97.97  E-value=8.2e-06  Score=73.46  Aligned_cols=91  Identities=14%  Similarity=0.040  Sum_probs=67.5

Q ss_pred             EEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCC-CccccceEEeecCCCC------CccccCCCCCCC-CC
Q 040058          115 VKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLD-SKYFSSRIIAREDFNG------KDRKNPDLVRGQ-ER  185 (326)
Q Consensus       115 vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~-~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~-~~  185 (326)
                      ..+.||+.++|+.+++ .+.+.|-|++.+.++..+++.++-. +.+|. .+++.++...      .+.+-+++++.. ++
T Consensus        86 ~~l~~G~~~~L~~L~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~~f~-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~  164 (220)
T TIGR03351        86 PVALPGAEEAFRSLRSSGIKVALTTGFDRDTAERLLEKLGWTVGDDVD-AVVCPSDVAAGRPAPDLILRAMELTGVQDVQ  164 (220)
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHHhhhhhhccCC-EEEcCCcCCCCCCCHHHHHHHHHHcCCCChh
Confidence            5799999999999975 5999999999999999999998765 26886 5777766432      134445666665 68


Q ss_pred             cEEEEeCCchhhccCCCCeEE
Q 040058          186 GIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      .+++|+|++.-.......++.
T Consensus       165 ~~~~igD~~~Di~aa~~aG~~  185 (220)
T TIGR03351       165 SVAVAGDTPNDLEAGINAGAG  185 (220)
T ss_pred             HeEEeCCCHHHHHHHHHCCCC
Confidence            999999998544322334443

This clade of sequences are the closest homologs to the PhnX enzyme, phosphonoacetaldehyde (Pald) hydrolase (phosphonatase, TIGR01422). This phosphonatase-like enzyme and PhnX itself are members of the haloacid dehalogenase (HAD) superfamily (pfam00702) having a a number of distinctive features that set them apart from typical HAD enzymes. The typical HAD N-terminal motif DxDx(T/V) here is DxAGT and the usual conserved lysine prior to the C-terminal motif is instead an arginine. Also distinctive of phosphonatase, and particular to its bi-catalytic mechanism is a conserved lysine in the variable "cap" domain. This lysine forms a Schiff base with the aldehyde of phosphonoacetaldehyde, providing, through the resulting positive charge, a polarization of the C-P bond necesary for cleavage as well as a route to the initial product of cleavage, an ene-amine. The conservation of these elements in this phosphonatase-like enzyme suggests that the

>TIGR01261 hisB_Nterm histidinol-phosphatase

Probab=97.89  E-value=2.7e-05  Score=68.04  Aligned_cols=117  Identities=10%  Similarity=-0.011  Sum_probs=76.9

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-------
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS-------  140 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g-------  140 (326)
                      ..|.||.||||++.....       +....             .-.+++-||+.++|+.|.+. |.++|.|+.       
T Consensus         2 ~~~~~d~dg~l~~~~~~~-------~~~~~-------------~~~~~~~pgv~e~L~~L~~~g~~l~IvSN~~g~~~~~   61 (161)
T TIGR01261         2 KILFIDRDGTLIEEPPSD-------FQVDA-------------LEKLRFEKGVIPALLKLKKAGYKFVMVTNQDGLGTPS   61 (161)
T ss_pred             CEEEEeCCCCccccCCCc-------cccCC-------------HHHeeECCCHHHHHHHHHHCCCeEEEEeCCccccCCc
Confidence            578999999999954211       00000             11357899999999999875 999999996       


Q ss_pred             --------cHHHHHHHHHHhCCCCccccceEEe----ecCCCCC------ccccCCCCCCCCCcEEEEeCCchhhccCCC
Q 040058          141 --------TRCYAEAAVKLLDLDSKYFSSRIIA----REDFNGK------DRKNPDLVRGQERGIVILDDTESVWSDHTE  202 (326)
Q Consensus       141 --------~~~YA~~v~~~LDP~~~~F~~Ri~s----Rd~~~~~------~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~  202 (326)
                              ...++..+++.++..   |...+++    .+++...      +..-+++++.+.+.+++|+|+..-......
T Consensus        62 ~~~~~~~~~~~~~~~~l~~~gl~---fd~ii~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~e~l~IGD~~~Di~~A~~  138 (161)
T TIGR01261        62 FPQADFDGPHNLMLQIFRSQGII---FDDVLICPHFPDDNCDCRKPKIKLLEPYLKKNLIDKARSYVIGDRETDMQLAEN  138 (161)
T ss_pred             CCHHHHHHHHHHHHHHHHHCCCc---eeEEEECCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHeEEEeCCHHHHHHHHH
Confidence                    467888888888875   6544555    2443221      222234456788899999999643322334


Q ss_pred             CeEEeC
Q 040058          203 NLIVLG  208 (326)
Q Consensus       203 N~I~I~  208 (326)
                      +++..-
T Consensus       139 aGi~~i  144 (161)
T TIGR01261       139 LGIRGI  144 (161)
T ss_pred             CCCeEE
Confidence            555443

This model describes histidinol phosphatase. All known examples in the scope of this model are bifunctional proteins with a histidinol phosphatase domain followed by an imidazoleglycerol-phosphate dehydratase domain. These enzymatic domains catalyze the ninth and seventh steps, respectively, of histidine biosynthesis.

>PHA02530 pseT polynucleotide kinase; Provisional

Probab=97.85  E-value=1.5e-05  Score=75.40  Aligned_cols=122  Identities=15%  Similarity=0.100  Sum_probs=86.8

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .++..+++|+|+||......... +|+.                  ..-..+.||+.++|+.+.+. +.++|.|+.....
T Consensus       156 ~~~~~~~~D~dgtl~~~~~~~~~-~~~~------------------~~~~~~~~~~~~~l~~l~~~g~~i~i~T~r~~~~  216 (300)
T PHA02530        156 GLPKAVIFDIDGTLAKMGGRSPY-DWTK------------------VKEDKPNPMVVELVKMYKAAGYEIIVVSGRDGVC  216 (300)
T ss_pred             CCCCEEEEECCCcCcCCCCCCcc-chhh------------------cccCCCChhHHHHHHHHHhCCCEEEEEeCCChhh
Confidence            55789999999999987543211 1110                  01126899999999999776 9999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecC-------CCC------CccccCCCCCC-CCCcEEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDLDSKYFSSRIIARED-------FNG------KDRKNPDLVRG-QERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~-------~~~------~~~KdL~~l~~-~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      ++.+++.|+..+.+|. .+++.+.       ...      ...+.|..++. +.+.+++|||++..-.....+++.+
T Consensus       217 ~~~~l~~l~~~~~~f~-~i~~~~~~~~~~~~~~~~kp~p~~~~~~l~~~~~~~~~~~~~vgD~~~d~~~a~~~Gi~~  292 (300)
T PHA02530        217 EEDTVEWLRQTDIWFD-DLIGRPPDMHFQREQGDKRPDDVVKEEIFWEKIAPKYDVLLAVDDRDQVVDMWRRIGLEC  292 (300)
T ss_pred             HHHHHHHHHHcCCchh-hhhCCcchhhhcccCCCCCCcHHHHHHHHHHHhccCceEEEEEcCcHHHHHHHHHhCCeE
Confidence            9999999999877886 3666652       111      12233444455 5689999999997665545666654

>PHA02597 30

Probab=97.81  E-value=7.6e-06  Score=72.62  Aligned_cols=95  Identities=12%  Similarity=0.071  Sum_probs=62.4

Q ss_pred             EEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCC---ccccceEEeecCCCCC---ccccCCCCCCCCCc
Q 040058          113 KLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDS---KYFSSRIIAREDFNGK---DRKNPDLVRGQERG  186 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~---~~F~~Ri~sRd~~~~~---~~KdL~~l~~~~~~  186 (326)
                      ..+++.||+.++|+.|.+.+.+++-|++.........+.+...+   .+|+ .+++.++....   +.+-+++++  ++.
T Consensus        71 ~~~~~~pG~~e~L~~L~~~~~~~i~Tn~~~~~~~~~~~~~~l~~~f~~~f~-~i~~~~~~~~kp~~~~~a~~~~~--~~~  147 (197)
T PHA02597         71 RYLSAYDDALDVINKLKEDYDFVAVTALGDSIDALLNRQFNLNALFPGAFS-EVLMCGHDESKEKLFIKAKEKYG--DRV  147 (197)
T ss_pred             HhccCCCCHHHHHHHHHhcCCEEEEeCCccchhHHHHhhCCHHHhCCCccc-EEEEeccCcccHHHHHHHHHHhC--CCc
Confidence            34678999999999999888888888877665555666554331   2564 46655554321   222334455  678


Q ss_pred             EEEEeCCchhhccCCCC--eEEeCcc
Q 040058          187 IVILDDTESVWSDHTEN--LIVLGKY  210 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N--~I~I~~y  210 (326)
                      +|+|||+..-......+  +|++--+
T Consensus       148 ~v~vgDs~~di~aA~~a~~Gi~~i~~  173 (197)
T PHA02597        148 VCFVDDLAHNLDAAHEALSQLPVIHM  173 (197)
T ss_pred             EEEeCCCHHHHHHHHHHHcCCcEEEe
Confidence            99999999766544555  6655433

2 hypothetical protein; Provisional

>TIGR01664 DNA-3'-Pase DNA 3'-phosphatase

Probab=97.80  E-value=7.2e-05  Score=65.60  Aligned_cols=104  Identities=15%  Similarity=0.041  Sum_probs=66.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCcHH---
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMSTRC---  143 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~---  143 (326)
                      +..++||+||||+.+.....      +... .            .-+..+-||+.+.|+.+.+ .|.+.|.|++...   
T Consensus        13 ~k~~~~D~Dgtl~~~~~~~~------~~~~-~------------~~~~~~~pgv~e~L~~Lk~~G~~l~I~TN~~~~~~~   73 (166)
T TIGR01664        13 SKVAAFDLDGTLITTRSGKV------FPTS-A------------SDWRFLYPEIPAKLQELDDEGYKIVIFTNQSGIGRG   73 (166)
T ss_pred             CcEEEEeCCCceEecCCCCc------ccCC-h------------HHeEEecCCHHHHHHHHHHCCCEEEEEeCCcccccC
Confidence            45688899999998653211      0000 0            0122367999999999965 5999999998763   


Q ss_pred             ---------HHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCC--CCCCcEEEEeCCc
Q 040058          144 ---------YAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVR--GQERGIVILDDTE  194 (326)
Q Consensus       144 ---------YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~--~~~~~vvIvDD~~  194 (326)
                               +++.+++.++..   +. -+++-++...      .+..-+++++  .+++.+++|.|++
T Consensus        74 ~~~~~~~~~~i~~~l~~~gl~---~~-~ii~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~~v~VGD~~  137 (166)
T TIGR01664        74 KLSAESFKNKIEAFLEKLKVP---IQ-VLAATHAGLYRKPMTGMWEYLQSQYNSPIKMTRSFYVGDAA  137 (166)
T ss_pred             cccHHHHHHHHHHHHHHcCCC---EE-EEEecCCCCCCCCccHHHHHHHHHcCCCCCchhcEEEECCC
Confidence                     566777777764   21 2443333211      1122234455  6788999999996

The central phosphatase domain is a member of the IIIA subfamily (TIGR01662) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. As is common in this superfamily, the enzyme is magnesium dependent. A difference between this enzyme and other HAD-superfamily phosphatases is in the third conserved catalytic motif which usually contains two conserved aspartate residues believed to be involved in binding the magnesium ion. Here, the second aspartate is usually replaced by an arginine residue which may indicate an interaction with the phosphate backbone of the substrate. Alternatively, there is an additional conserved aspartate downstream of the ususal site which may indicate slightly different fold in this region.

>PLN02940 riboflavin kinase

Probab=97.72  E-value=9.8e-06  Score=80.13  Aligned_cols=91  Identities=14%  Similarity=0.133  Sum_probs=67.6

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHH-HhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVK-LLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~-~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      .+.+.||+.++|+.+.+. +.+.|-|++.+.++..+++ ..+-. .+|. .+++.++...      .+..-+++++..++
T Consensus        91 ~~~l~pGv~elL~~Lk~~g~~l~IvTn~~~~~~~~~l~~~~gl~-~~Fd-~ii~~d~v~~~KP~p~~~~~a~~~lgv~p~  168 (382)
T PLN02940         91 NIKALPGANRLIKHLKSHGVPMALASNSPRANIEAKISCHQGWK-ESFS-VIVGGDEVEKGKPSPDIFLEAAKRLNVEPS  168 (382)
T ss_pred             cCCCCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhccChH-hhCC-EEEehhhcCCCCCCHHHHHHHHHHcCCChh
Confidence            356889999999999766 9999999999999998887 55554 5787 5777777643      23445566777889


Q ss_pred             cEEEEeCCchhhccCCCCeEE
Q 040058          186 GIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      .+|+|+|++.--......++.
T Consensus       169 ~~l~VGDs~~Di~aA~~aGi~  189 (382)
T PLN02940        169 NCLVIEDSLPGVMAGKAAGME  189 (382)
T ss_pred             HEEEEeCCHHHHHHHHHcCCE
Confidence            999999998544333334443

>TIGR00213 GmhB_yaeD D,D-heptose 1,7-bisphosphate phosphatase

Probab=97.71  E-value=6.7e-05  Score=65.89  Aligned_cols=110  Identities=11%  Similarity=0.027  Sum_probs=68.0

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-----
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-----  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-----  142 (326)
                      ..|.||+||||+-....  +..        .+             -+.+-||+.++|+++.+. |.++|.|++..     
T Consensus         2 ~~~~~D~Dgtl~~~~~~--~~~--------~~-------------~~~~~pgv~e~L~~Lk~~G~~l~i~TN~~~~~~~~   58 (176)
T TIGR00213         2 KAIFLDRDGTINIDHGY--VHE--------ID-------------NFEFIDGVIDALRELKKMGYALVLVTNQSGIARGY   58 (176)
T ss_pred             CEEEEeCCCCEeCCCCC--CCC--------HH-------------HeEECCCHHHHHHHHHHCCCEEEEEeCCccccCCc
Confidence            46889999999942110  000        00             136889999999999866 99999999985     


Q ss_pred             ----------HHHHHHHHHhCCCCccccceEEee-----------cCCCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058          143 ----------CYAEAAVKLLDLDSKYFSSRIIAR-----------EDFNG------KDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       143 ----------~YA~~v~~~LDP~~~~F~~Ri~sR-----------d~~~~------~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                                .|...++..+...   |.. ++..           +++..      .+.+-+++++-+++.+++|+|++.
T Consensus        59 ~~~~~~~~~~~~~~~~l~~~~~~---~~~-i~~~~~~~~~~~~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~v~VGDs~~  134 (176)
T TIGR00213        59 FTEAQFEQLTEWMDWSLAERDVD---LDG-IYYCPHHPEGVEEFRQVCDCRKPKPGMLLQARKELHIDMAQSYMVGDKLE  134 (176)
T ss_pred             CCHHHHHHHHHHHHHHHHHcCCC---ccE-EEECCCCCcccccccCCCCCCCCCHHHHHHHHHHcCcChhhEEEEcCCHH
Confidence                      4444555443322   332 3221           12211      234456667788999999999975


Q ss_pred             hhccCCCCeE
Q 040058          196 VWSDHTENLI  205 (326)
Q Consensus       196 vw~~~~~N~I  205 (326)
                      -......+++
T Consensus       135 Di~aA~~aG~  144 (176)
T TIGR00213       135 DMQAGVAAKV  144 (176)
T ss_pred             HHHHHHHCCC
Confidence            4432334444

This family of proteins formerly designated yaeD resembles the histidinol phosphatase domain of the bifunctional protein HisB. The member from E. coli has been characterized as D,D-heptose 1,7-bisphosphate phosphatase, GmhB, involved in inner core LPS assembly (PubMed:11751812).

>PF12689 Acid_PPase: Acid Phosphatase; InterPro: IPR010036 This entry represents two closely related clades of sequences from eukaryotes and archaea

Probab=97.68  E-value=3.9e-05  Score=67.78  Aligned_cols=123  Identities=19%  Similarity=0.162  Sum_probs=64.8

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEc-CCcHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCT-MSTRCYA  145 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT-~g~~~YA  145 (326)
                      +..+|+|||.||+.-.....+++.-   ......  ..+. -..+.-+.+-|++.+.|+++... .+|.+.| +..++.|
T Consensus         3 PklvvFDLD~TlW~~~~~~~~~~Pf---~~~~~~--~~v~-D~~g~~v~lypdv~~iL~~L~~~gv~lavASRt~~P~~A   76 (169)
T PF12689_consen    3 PKLVVFDLDYTLWPPWMDTHVGPPF---KKISNG--NVVV-DSRGEEVSLYPDVPEILQELKERGVKLAVASRTDEPDWA   76 (169)
T ss_dssp             -SEEEE-STTTSSSS-TTTSS-S-E---EE-TTS----EE-ETT--EE---TTHHHHHHHHHHCT--EEEEE--S-HHHH
T ss_pred             CcEEEEcCcCCCCchhHhhccCCCc---eecCCC--CEEE-eCCCCEEEeCcCHHHHHHHHHHCCCEEEEEECCCChHHH
Confidence            5678999999999887665433211   000000  0011 01256689999999999999865 9999999 5688999


Q ss_pred             HHHHHHhCCC---------CccccceEEeecCCCCCccccCC-CCCCCCCcEEEEeCCchhh
Q 040058          146 EAAVKLLDLD---------SKYFSSRIIAREDFNGKDRKNPD-LVRGQERGIVILDDTESVW  197 (326)
Q Consensus       146 ~~v~~~LDP~---------~~~F~~Ri~sRd~~~~~~~KdL~-~l~~~~~~vvIvDD~~~vw  197 (326)
                      .++++.|+..         ..+|.+-=+... +...+.+.|. ..+-+.+.++++||....-
T Consensus        77 ~~~L~~l~i~~~~~~~~~~~~~F~~~eI~~g-sK~~Hf~~i~~~tgI~y~eMlFFDDe~~N~  137 (169)
T PF12689_consen   77 RELLKLLEIDDADGDGVPLIEYFDYLEIYPG-SKTTHFRRIHRKTGIPYEEMLFFDDESRNI  137 (169)
T ss_dssp             HHHHHHTT-C----------CCECEEEESSS--HHHHHHHHHHHH---GGGEEEEES-HHHH
T ss_pred             HHHHHhcCCCccccccccchhhcchhheecC-chHHHHHHHHHhcCCChhHEEEecCchhcc
Confidence            9999998876         124543222221 1112333333 3466788899999997543

The mouse enzyme has been characterised as a phosphatase and has been positively identified as a member of the haloacid dehalogenase (HAD) superfamily by site-directed mutagenesis of the active site residues [, ].; GO: 0016791 phosphatase activity; PDB: 1U7P_A 1U7O_A 2WM8_A.

>TIGR01672 AphA HAD superfamily (subfamily IIIB) phosphatase, TIGR01672

Probab=97.65  E-value=5.4e-05  Score=70.34  Aligned_cols=149  Identities=14%  Similarity=0.160  Sum_probs=82.7

Q ss_pred             cceeeec-cceecCccccCceEEEEeCCCceeeecccCC-----CCccc-hhhhccccccccceeeccceEEEEeCccHH
Q 040058           50 LSFDYML-RGLRYSEQEERKLQLVLNLDHTLLHCRNIKS-----LSSGE-KYLKKQIHSFIGSLFQMANDKLVKLRPFVR  122 (326)
Q Consensus        50 ~~~~~~~-~~l~~s~~~~~Kl~LVLDLD~TLIhs~~~~~-----~~~~e-~~l~~~~~~~~~~l~~~~~~~~vklRPgl~  122 (326)
                      .+++++. ..+.=|-+.++++.++|||||||++|+..-.     .++.+ .++..+.-   .+.+.....-.....|++.
T Consensus        44 ~~~~~~~~~~~~~~~~~~~p~aViFDlDgTLlDSs~~~~~G~~~~s~~~~~~l~g~~~---w~~~~~~~~~~s~p~~~a~  120 (237)
T TIGR01672        44 APIHWISVAQIENSLEGRPPIAVSFDIDDTVLFSSPGFWRGKKTFSPGSEDYLKNQVF---WEKVNNGWDEFSIPKEVAR  120 (237)
T ss_pred             CCeeEEEHHHHHHhcCCCCCeEEEEeCCCccccCcHHHhCCcccCCHHHhhhhcChHH---HHHHHHhcccCCcchhHHH
Confidence            3455543 2222233336677999999999999986210     01100 01111000   0000000022334555699


Q ss_pred             HHHHHhhcC-ceEEEEcCC----cHHHHHHHHHHhCCCCccccceEEeecCCCC-CccccCCCCCCCCCcEEEEeCCchh
Q 040058          123 TFLEQASSL-VDIYLCTMS----TRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-KDRKNPDLVRGQERGIVILDDTESV  196 (326)
Q Consensus       123 eFL~~ls~~-yEl~IyT~g----~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-~~~KdL~~l~~~~~~vvIvDD~~~v  196 (326)
                      +||+.+.+. +.+.|-|+.    .+.+++.+++.++-. .+|. -+++.++... ...|. ..+ .....++.+-|+..=
T Consensus       121 elL~~l~~~G~~i~iVTnr~~~k~~~~a~~ll~~lGi~-~~f~-~i~~~d~~~~~Kp~~~-~~l-~~~~i~i~vGDs~~D  196 (237)
T TIGR01672       121 QLIDMHQRRGDAIFFVTGRTPGKTDTVSKTLAKNFHIP-AMNP-VIFAGDKPGQYQYTKT-QWI-QDKNIRIHYGDSDND  196 (237)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCCcCHHHHHHHHHHhCCc-hhee-EEECCCCCCCCCCCHH-HHH-HhCCCeEEEeCCHHH
Confidence            999999876 999999998    677999999988876 4775 4676555432 11111 111 223347889998754


Q ss_pred             hccCCCCeE
Q 040058          197 WSDHTENLI  205 (326)
Q Consensus       197 w~~~~~N~I  205 (326)
                      ......+++
T Consensus       197 I~aAk~AGi  205 (237)
T TIGR01672       197 ITAAKEAGA  205 (237)
T ss_pred             HHHHHHCCC
Confidence            433333443

Supporting evidence for the inclusion in the HAD superfamily, whose phosphatase members are magnesium dependent, is the inhibition by EDTA and calcium ions, and stimulation by magnesium ion.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=97.62  E-value=6.5e-05  Score=68.11  Aligned_cols=84  Identities=7%  Similarity=0.041  Sum_probs=55.2

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE-eecC----------------CCCCccc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII-ARED----------------FNGKDRK  175 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~-sRd~----------------~~~~~~K  175 (326)
                      .+.++||+.+||+.+.+. +.+.|.|+|.+.|++++++.+-+...++.+... +.+.                |+....+
T Consensus        72 ~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~~~~~~~~~~kp~p~~~~~~~~~~~~K~~  151 (219)
T PRK09552         72 TAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGLIPKEQIYCNGSDFSGEYITITWPHPCDEHCQNHCGCCKPS  151 (219)
T ss_pred             CCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHhCCcCcEEEeEEEecCCeeEEeccCCccccccccCCCchHH
Confidence            368999999999999866 999999999999999999876112234433222 1111                1111112


Q ss_pred             cCCCCCCCCCcEEEEeCCchhh
Q 040058          176 NPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       176 dL~~l~~~~~~vvIvDD~~~vw  197 (326)
                      -++.++.+...+|+|.|+..=.
T Consensus       152 ~l~~~~~~~~~~i~iGDs~~Di  173 (219)
T PRK09552        152 LIRKLSDTNDFHIVIGDSITDL  173 (219)
T ss_pred             HHHHhccCCCCEEEEeCCHHHH
Confidence            2334455667899999997433

>PRK08942 D,D-heptose 1,7-bisphosphate phosphatase; Validated

Probab=97.60  E-value=0.00021  Score=62.91  Aligned_cols=102  Identities=9%  Similarity=-0.032  Sum_probs=65.4

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH----
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR----  142 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~----  142 (326)
                      .+.|+||+||||+-... .       +. ..             .-.+.+.||+.++|+++++. |.+.|.|++++    
T Consensus         3 ~~~~~~d~~~t~~~~~~-~-------~~-~~-------------~~~~~~~pgv~e~L~~Lk~~g~~l~I~Tn~~~~~~~   60 (181)
T PRK08942          3 MKAIFLDRDGVINVDSD-G-------YV-KS-------------PDEWIPIPGSIEAIARLKQAGYRVVVATNQSGIARG   60 (181)
T ss_pred             ccEEEEECCCCcccCCc-c-------cc-CC-------------HHHeEECCCHHHHHHHHHHCCCEEEEEeCCccccCC
Confidence            46899999999854431 1       00 00             00236889999999999876 99999999873    


Q ss_pred             -----------HHHHHHHHHhCCCCccccceEEeecC-----CCC------CccccCCCCCCCCCcEEEEeCCch
Q 040058          143 -----------CYAEAAVKLLDLDSKYFSSRIIARED-----FNG------KDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       143 -----------~YA~~v~~~LDP~~~~F~~Ri~sRd~-----~~~------~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                                 ++...+++.++   .+|.. ++...+     ...      .+.+-++.++.+++.+++|+|++.
T Consensus        61 ~~~~~~~~~~~~~~~~~l~~~g---~~f~~-i~~~~~~~~~~~~~~KP~p~~~~~~~~~l~~~~~~~~~VgDs~~  131 (181)
T PRK08942         61 LFTEAQLNALHEKMDWSLADRG---GRLDG-IYYCPHHPEDGCDCRKPKPGMLLSIAERLNIDLAGSPMVGDSLR  131 (181)
T ss_pred             cCCHHHHHHHHHHHHHHHHHcC---Cccce-EEECCCCCCCCCcCCCCCHHHHHHHHHHcCCChhhEEEEeCCHH
Confidence                       33444454443   23553 443221     111      134455667778899999999974

>TIGR00338 serB phosphoserine phosphatase SerB

Probab=97.55  E-value=2.4e-05  Score=70.40  Aligned_cols=84  Identities=13%  Similarity=0.074  Sum_probs=59.9

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec-------C---CCC-----CccccC
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE-------D---FNG-----KDRKNP  177 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd-------~---~~~-----~~~KdL  177 (326)
                      .++++||+.+||+.+.+. +.++|.|+|.+.++..+++.++-. .+|.+.+.+-+       .   +..     .+.+-+
T Consensus        83 ~~~~~~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~  161 (219)
T TIGR00338        83 NLPLTEGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD-AAFANRLEVEDGKLTGLVEGPIVDASYKGKTLLILL  161 (219)
T ss_pred             cCCcCCCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC-ceEeeEEEEECCEEEEEecCcccCCcccHHHHHHHH
Confidence            357899999999999875 999999999999999999998776 36765443211       0   000     012223


Q ss_pred             CCCCCCCCcEEEEeCCchhhc
Q 040058          178 DLVRGQERGIVILDDTESVWS  198 (326)
Q Consensus       178 ~~l~~~~~~vvIvDD~~~vw~  198 (326)
                      ++++.+.+.+++|+|+..-..
T Consensus       162 ~~~~~~~~~~i~iGDs~~Di~  182 (219)
T TIGR00338       162 RKEGISPENTVAVGDGANDLS  182 (219)
T ss_pred             HHcCCCHHHEEEEECCHHHHH
Confidence            345667789999999974443

Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.

>PF05152 DUF705: Protein of unknown function (DUF705); InterPro: IPR007827 This family contains uncharacterised baculoviral proteins

Probab=97.49  E-value=0.00053  Score=64.89  Aligned_cols=75  Identities=24%  Similarity=0.238  Sum_probs=61.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCc-eEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLV-DIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~y-El~IyT~g~~~Y  144 (326)
                      +.+-++|+|||.|||.......                            -.-|.+.+-|.++.+.+ -+++|+.|+++|
T Consensus       120 ~~phVIVfDlD~TLItd~~~v~----------------------------Ir~~~v~~sL~~Lk~~g~vLvLWSyG~~eH  171 (297)
T PF05152_consen  120 EPPHVIVFDLDSTLITDEGDVR----------------------------IRDPAVYDSLRELKEQGCVLVLWSYGNREH  171 (297)
T ss_pred             CCCcEEEEECCCcccccCCccc----------------------------cCChHHHHHHHHHHHcCCEEEEecCCCHHH
Confidence            7888999999999998863211                            13488899999999885 899999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCC
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFN  170 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~  170 (326)
                      |..-++.++.. .+|. -|++++...
T Consensus       172 V~~sl~~~~L~-~~Fd-~ii~~G~~~  195 (297)
T PF05152_consen  172 VRHSLKELKLE-GYFD-IIICGGNKA  195 (297)
T ss_pred             HHHHHHHhCCc-cccE-EEEeCCccC
Confidence            99999999988 6787 488766544

>TIGR01489 DKMTPPase-SF 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=97.40  E-value=0.00033  Score=60.89  Aligned_cols=50  Identities=10%  Similarity=0.237  Sum_probs=42.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEee
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAR  166 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sR  166 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+++.++-. .+|. .+++.
T Consensus        71 ~~l~~g~~~ll~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~~  121 (188)
T TIGR01489        71 APIDPGFKEFIAFIKEHGIDFIVISDGNDFFIDPVLEGIGEK-DVFI-EIYSN  121 (188)
T ss_pred             CCCCccHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHHcCCh-hhee-EEecc
Confidence            68999999999999765 999999999999999999988765 4675 36653

Note that SP|P53981 from S. cerevisiae, a member of this family, is annotated as a "probable membrane protein" due to a predicted transmembrane helix. The region in question contains the second of the three conserved HAD superfamily catalytic motifs and thus, considering the fold of the HAD catalytic domain, is unlikely to be a transmembrane region in fact.

>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A

Probab=97.34  E-value=0.00029  Score=59.51  Aligned_cols=83  Identities=23%  Similarity=0.319  Sum_probs=68.0

Q ss_pred             EEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      ....+.||+.++|+.++ +.+.++|.|++.+.++..+++.+... .+|. .+++.++.+.      .+.+-++.++.+++
T Consensus        74 ~~~~~~~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~~~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~p~  151 (176)
T PF13419_consen   74 SKLQPYPGVRELLERLKAKGIPLVIVSNGSRERIERVLERLGLD-DYFD-EIISSDDVGSRKPDPDAYRRALEKLGIPPE  151 (176)
T ss_dssp             GGEEESTTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTTHG-GGCS-EEEEGGGSSSSTTSHHHHHHHHHHHTSSGG
T ss_pred             hccchhhhhhhhhhhcccccceeEEeecCCcccccccccccccc-cccc-cccccchhhhhhhHHHHHHHHHHHcCCCcc
Confidence            56799999999999999 66999999999999999999999877 6787 5777776653      13344555677889


Q ss_pred             cEEEEeCCchhh
Q 040058          186 GIVILDDTESVW  197 (326)
Q Consensus       186 ~vvIvDD~~~vw  197 (326)
                      .+++|||++.-.
T Consensus       152 ~~~~vgD~~~d~  163 (176)
T PF13419_consen  152 EILFVGDSPSDV  163 (176)
T ss_dssp             GEEEEESSHHHH
T ss_pred             eEEEEeCCHHHH
Confidence            999999998544

...

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=97.32  E-value=0.00027  Score=63.45  Aligned_cols=80  Identities=14%  Similarity=0.095  Sum_probs=66.4

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      .++.+.||+.++|+.+.+. +.+.|.|++.+.++...++.++.. .+|. .+++.++.+.      .+.+-+++++.+.+
T Consensus        91 ~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~  168 (221)
T TIGR02253        91 AYLRVYPGVRDTLMELRESGYRLGIITDGLPVKQWEKLERLGVR-DFFD-AVITSEEEGVEKPHPKIFYAALKRLGVKPE  168 (221)
T ss_pred             HhCCCCCCHHHHHHHHHHCCCEEEEEeCCchHHHHHHHHhCChH-Hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCChh
Confidence            3468999999999999876 999999999999999999999886 6887 4777776653      24455677888889


Q ss_pred             cEEEEeCCc
Q 040058          186 GIVILDDTE  194 (326)
Q Consensus       186 ~vvIvDD~~  194 (326)
                      .+|+|+|++
T Consensus       169 ~~~~igDs~  177 (221)
T TIGR02253       169 EAVMVGDRL  177 (221)
T ss_pred             hEEEECCCh
Confidence            999999997

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>TIGR01668 YqeG_hyp_ppase HAD superfamily (subfamily IIIA) phosphatase, TIGR01668

Probab=97.22  E-value=0.00045  Score=60.57  Aligned_cols=104  Identities=15%  Similarity=0.119  Sum_probs=70.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-HH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-RC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-~~  143 (326)
                      ..-..+|+|+|+||.....                              ..+-||+.++|+.+.+. +.++|.|++. ..
T Consensus        23 ~~v~~vv~D~Dgtl~~~~~------------------------------~~~~pgv~e~L~~Lk~~g~~l~I~Sn~~~~~   72 (170)
T TIGR01668        23 VGIKGVVLDKDNTLVYPDH------------------------------NEAYPALRDWIEELKAAGRKLLIVSNNAGEQ   72 (170)
T ss_pred             CCCCEEEEecCCccccCCC------------------------------CCcChhHHHHHHHHHHcCCEEEEEeCCchHH
Confidence            4556789999999986531                              13679999999999876 9999999999 68


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc--hhhccCCCCeE
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE--SVWSDHTENLI  205 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~vw~~~~~N~I  205 (326)
                      .+..+++.++.. .+++.    ..-....+.+-++.++.+.+.+++|+|+.  ++-.. ..+++
T Consensus        73 ~~~~~~~~~gl~-~~~~~----~KP~p~~~~~~l~~~~~~~~~~l~IGDs~~~Di~aA-~~aGi  130 (170)
T TIGR01668        73 RAKAVEKALGIP-VLPHA----VKPPGCAFRRAHPEMGLTSEQVAVVGDRLFTDVMGG-NRNGS  130 (170)
T ss_pred             HHHHHHHHcCCE-EEcCC----CCCChHHHHHHHHHcCCCHHHEEEECCcchHHHHHH-HHcCC
Confidence            888887776643 11110    00011123344555677788999999996  55543 33444

This family consists of sequences from fungi, plants, cyanobacteria, gram-positive bacteria and Deinococcus. There is presently no characterization of any sequence in this family.

>PLN02770 haloacid dehalogenase-like hydrolase family protein

Probab=97.13  E-value=0.0004  Score=64.30  Aligned_cols=93  Identities=14%  Similarity=0.104  Sum_probs=72.6

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|-|++.+.+++.+++.++-. .||. .+++.++...      .+.+-+++++.+++.
T Consensus       106 ~~~l~pgv~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~iv~~~~~~~~KP~p~~~~~a~~~~~~~~~~  183 (248)
T PLN02770        106 QLKPLNGLYKLKKWIEDRGLKRAAVTNAPRENAELMISLLGLS-DFFQ-AVIIGSECEHAKPHPDPYLKALEVLKVSKDH  183 (248)
T ss_pred             cCCcCccHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHHcCCh-hhCc-EEEecCcCCCCCCChHHHHHHHHHhCCChhH
Confidence            467899999999999655 999999999999999999999887 6887 4777776543      245556777888899


Q ss_pred             EEEEeCCchhhccCCCCeEEeC
Q 040058          187 IVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      +++|+|++.-......+++.+-
T Consensus       184 ~l~vgDs~~Di~aA~~aGi~~i  205 (248)
T PLN02770        184 TFVFEDSVSGIKAGVAAGMPVV  205 (248)
T ss_pred             EEEEcCCHHHHHHHHHCCCEEE
Confidence            9999999854443345555543

>PRK06769 hypothetical protein; Validated

Probab=97.13  E-value=0.0008  Score=59.15  Aligned_cols=78  Identities=13%  Similarity=0.078  Sum_probs=48.6

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHH-----HHHHHHHhCCCCccccceEEeec----CCCC------CccccCCC
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCY-----AEAAVKLLDLDSKYFSSRIIARE----DFNG------KDRKNPDL  179 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~Y-----A~~v~~~LDP~~~~F~~Ri~sRd----~~~~------~~~KdL~~  179 (326)
                      .+-||+.++|++|.+. |.+.|.|++....     .......+...|  |.+.+++-.    +...      .+.+-+++
T Consensus        28 ~~~pgv~e~L~~Lk~~G~~l~I~Tn~~~~~~~~~~~~~~~~~l~~~g--~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~  105 (173)
T PRK06769         28 TLFPFTKASLQKLKANHIKIFSFTNQPGIADGIATIADFVQELKGFG--FDDIYLCPHKHGDGCECRKPSTGMLLQAAEK  105 (173)
T ss_pred             EECCCHHHHHHHHHHCCCEEEEEECCchhcCCcCCHHHHHHHHHhCC--cCEEEECcCCCCCCCCCCCCCHHHHHHHHHH
Confidence            6789999999999765 9999999987521     011222222222  222233222    1111      24455666


Q ss_pred             CCCCCCcEEEEeCCch
Q 040058          180 VRGQERGIVILDDTES  195 (326)
Q Consensus       180 l~~~~~~vvIvDD~~~  195 (326)
                      ++.+++.+++|+|++.
T Consensus       106 l~~~p~~~i~IGD~~~  121 (173)
T PRK06769        106 HGLDLTQCAVIGDRWT  121 (173)
T ss_pred             cCCCHHHeEEEcCCHH
Confidence            7788999999999974

>PLN03243 haloacid dehalogenase-like hydrolase; Provisional

Probab=97.12  E-value=0.0004  Score=65.21  Aligned_cols=92  Identities=18%  Similarity=0.286  Sum_probs=72.7

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. |.+.|.|++++.++..+++.++-. .||. .+++.++...      .+.+-+++++..++.
T Consensus       107 ~~~l~pg~~e~L~~L~~~g~~l~I~Tn~~~~~~~~~l~~~gl~-~~Fd-~ii~~~d~~~~KP~Pe~~~~a~~~l~~~p~~  184 (260)
T PLN03243        107 LYRLRPGSREFVQALKKHEIPIAVASTRPRRYLERAIEAVGME-GFFS-VVLAAEDVYRGKPDPEMFMYAAERLGFIPER  184 (260)
T ss_pred             CcccCCCHHHHHHHHHHCCCEEEEEeCcCHHHHHHHHHHcCCH-hhCc-EEEecccCCCCCCCHHHHHHHHHHhCCChHH
Confidence            467899999999999865 999999999999999999999876 5787 4777777642      245667778888999


Q ss_pred             EEEEeCCchhhccCCCCeEEe
Q 040058          187 IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +++|+|+..-......+++.+
T Consensus       185 ~l~IgDs~~Di~aA~~aG~~~  205 (260)
T PLN03243        185 CIVFGNSNSSVEAAHDGCMKC  205 (260)
T ss_pred             eEEEcCCHHHHHHHHHcCCEE
Confidence            999999986554444555543

>TIGR01449 PGP_bact 2-phosphoglycolate phosphatase, prokaryotic

Probab=97.11  E-value=0.00044  Score=61.59  Aligned_cols=95  Identities=18%  Similarity=0.126  Sum_probs=72.5

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++...      .+.+-++.++.+++.
T Consensus        83 ~~~~~~g~~~~L~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~p~~~~~~~~~~~~~~~~  160 (213)
T TIGR01449        83 LTSVFPGVEATLGALRAKGLRLGLVTNKPTPLARPLLELLGLA-KYFS-VLIGGDSLAQRKPHPDPLLLAAERLGVAPQQ  160 (213)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCcH-hhCc-EEEecCCCCCCCCChHHHHHHHHHcCCChhH
Confidence            468999999999999765 999999999999999999998876 4786 5777665432      134456667788889


Q ss_pred             EEEEeCCchhhccCCCCeEEeCcc
Q 040058          187 IVILDDTESVWSDHTENLIVLGKY  210 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I~~y  210 (326)
                      +++|+|++.-.......++.+-..
T Consensus       161 ~~~igDs~~d~~aa~~aG~~~i~v  184 (213)
T TIGR01449       161 MVYVGDSRVDIQAARAAGCPSVLL  184 (213)
T ss_pred             eEEeCCCHHHHHHHHHCCCeEEEE
Confidence            999999986554434555555433

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolase enzymes (pfam00702).

>TIGR01533 lipo_e_P4 5'-nucleotidase, lipoprotein e(P4) family

Probab=97.08  E-value=0.00094  Score=63.11  Aligned_cols=120  Identities=19%  Similarity=0.237  Sum_probs=67.2

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhcccccccccee-eccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLF-QMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~-~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      .+|+.+|||+|||+++.+...    ....+.  ...+...-| .....--...-||+.+||+.+.+. ..++|-|+..+.
T Consensus        73 ~kp~AVV~DIDeTvLdns~y~----~~~~~~--~~~~~~~~w~~wv~~~~a~~ipGA~e~L~~L~~~G~~v~iVTnR~~~  146 (266)
T TIGR01533        73 DKKYAIVLDLDETVLDNSPYQ----GYQVLN--NKPFDPETWDKWVQAAQAKPVAGALDFLNYANSKGVKIFYVSNRSEK  146 (266)
T ss_pred             CCCCEEEEeCccccccChHHH----HHHhcC--CCcCCHHHHHHHHHcCCCCcCccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            678999999999999876321    000000  000000000 000011235789999999999765 899999998876


Q ss_pred             HHHHHHH---HhCCCCccccceEEeecCCCCCccccCCC--CCCCCCcEEEEeCCch
Q 040058          144 YAEAAVK---LLDLDSKYFSSRIIAREDFNGKDRKNPDL--VRGQERGIVILDDTES  195 (326)
Q Consensus       144 YA~~v~~---~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~  195 (326)
                      +.+...+   .++-.. .+.+.++.|++..   -|..++  +-.+-.-++.|.|+..
T Consensus       147 ~~~~T~~~Lkk~Gi~~-~~~d~lllr~~~~---~K~~rr~~I~~~y~Ivl~vGD~~~  199 (266)
T TIGR01533       147 EKAATLKNLKRFGFPQ-ADEEHLLLKKDKS---SKESRRQKVQKDYEIVLLFGDNLL  199 (266)
T ss_pred             hHHHHHHHHHHcCcCC-CCcceEEeCCCCC---CcHHHHHHHHhcCCEEEEECCCHH
Confidence            6664444   444432 2334577776432   233222  2223344777888754

which in turn belongs to the haloacid dehalogenase (HAD) superfamily of aspartate-dependent hydrolases. Members are found on the outer membrane of Gram-negative bacteria and the cytoplasmic membrane of Gram-positive bacteria. Most members have classic lipoprotein signal sequences. A critical role of this 5'-nucleotidase in Haemophilus influenzae is the degradation of external riboside in order to allow transport into the cell. An earlier suggested role in hemin transport is no longer current. This enzyme may also have other physiologically significant roles.

>TIGR01428 HAD_type_II 2-haloalkanoic acid dehalogenase, type II

Probab=97.07  E-value=0.00043  Score=61.32  Aligned_cols=82  Identities=10%  Similarity=0.072  Sum_probs=65.3

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. |.+.|.|++...++..+++.++-. .+|. .+++.++.+.      .+.+-+++++.+++.
T Consensus        90 ~~~~~~~~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~p~~  167 (198)
T TIGR01428        90 RLPPHPDVPAGLRALKERGYRLAILSNGSPAMLKSLVKHAGLD-DPFD-AVLSADAVRAYKPAPQVYQLALEALGVPPDE  167 (198)
T ss_pred             cCCCCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHCCCh-hhhh-eeEehhhcCCCCCCHHHHHHHHHHhCCChhh
Confidence            356889999999999986 999999999999999999988765 5786 4777776543      133445567778899


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +++|+|++.-.
T Consensus       168 ~~~vgD~~~Di  178 (198)
T TIGR01428       168 VLFVASNPWDL  178 (198)
T ss_pred             EEEEeCCHHHH
Confidence            99999998433

Note that the Type I HAD enzymes have not yet been fully characterized, but clearly utilize a substantially different catalytic mechanism and are thus unlikely to be related.

>TIGR01509 HAD-SF-IA-v3 haloacid dehalogenase superfamily, subfamily IA, variant 3 with third motif having DD or ED

Probab=97.05  E-value=0.00065  Score=58.64  Aligned_cols=80  Identities=21%  Similarity=0.147  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.+||+.+++. +.+.|.|++...+ ..+...++.. .+|.. +++.++...      .+.+-+++++.+++.+
T Consensus        84 ~~~~~g~~~~l~~l~~~g~~~~i~Tn~~~~~-~~~~~~~~l~-~~f~~-i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  160 (183)
T TIGR01509        84 LKPLPGVEPLLEALRARGKKLALLTNSPRDH-AVLVQELGLR-DLFDV-VIFSGDVGRGKPDPDIYLLALKKLGLKPEEC  160 (183)
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCchHH-HHHHHhcCCH-HHCCE-EEEcCCCCCCCCCHHHHHHHHHHcCCCcceE
Confidence            68899999999999865 9999999999999 6666657776 46874 555454432      1334455667788999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      ++|||++.--
T Consensus       161 ~~vgD~~~di  170 (183)
T TIGR01509       161 LFVDDSPAGI  170 (183)
T ss_pred             EEEcCCHHHH
Confidence            9999998533

HAD subfamilies caused by an overly broad single model.

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=97.04  E-value=0.00066  Score=60.53  Aligned_cols=93  Identities=16%  Similarity=0.122  Sum_probs=70.9

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++-. .+|. .+++.++...      .+.+-+++++.+.+.
T Consensus        73 ~~~~~~g~~~~L~~L~~~g~~~~i~Sn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~  150 (205)
T TIGR01454        73 EVEVFPGVPELLAELRADGVGTAIATGKSGPRARSLLEALGLL-PLFD-HVIGSDEVPRPKPAPDIVREALRLLDVPPED  150 (205)
T ss_pred             ccccCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHcCCh-hhee-eEEecCcCCCCCCChHHHHHHHHHcCCChhh
Confidence            467899999999999765 999999999999999999999887 4787 4777666532      133344556778899


Q ss_pred             EEEEeCCchhhccCCCCeEEeC
Q 040058          187 IVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      +++|+|++.-......+++++-
T Consensus       151 ~l~igD~~~Di~aA~~~Gi~~i  172 (205)
T TIGR01454       151 AVMVGDAVTDLASARAAGTATV  172 (205)
T ss_pred             eEEEcCCHHHHHHHHHcCCeEE
Confidence            9999999754443455666543

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>PRK05446 imidazole glycerol-phosphate dehydratase/histidinol phosphatase; Provisional

Probab=97.03  E-value=0.0025  Score=62.62  Aligned_cols=105  Identities=11%  Similarity=0.071  Sum_probs=68.1

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC-----
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS-----  140 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g-----  140 (326)
                      +|.+|+||-|+||+......       ++...             ...+.+.||+.++|+.+.+. |.++|.|++     
T Consensus         1 ~~k~l~lDrDgtl~~~~~~~-------y~~~~-------------~~~~~l~pGV~e~L~~Lk~~G~kL~IvTNq~g~G~   60 (354)
T PRK05446          1 MQKILFIDRDGTLIEEPPTD-------FQVDS-------------LDKLAFEPGVIPALLKLQKAGYKLVMVTNQDGLGT   60 (354)
T ss_pred             CCcEEEEeCCCCccCCCCcc-------ccccC-------------cccceECcCHHHHHHHHHhCCCeEEEEECCccccC
Confidence            47899999999999986321       11111             12368999999999999865 999999995     


Q ss_pred             ----------cHHHHHHHHHHhCCCCccccceEEee----cCCCCC------ccccCCCCCCCCCcEEEEeCCc
Q 040058          141 ----------TRCYAEAAVKLLDLDSKYFSSRIIAR----EDFNGK------DRKNPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       141 ----------~~~YA~~v~~~LDP~~~~F~~Ri~sR----d~~~~~------~~KdL~~l~~~~~~vvIvDD~~  194 (326)
                                .+.++..+++.++.   .|..-+++.    +++...      +..-++.++.+++.+++|.|+.
T Consensus        61 ~~~~~~~l~~~~~~i~~iL~~~gl---~fd~i~i~~~~~sd~~~~rKP~p~~l~~a~~~l~v~~~~svmIGDs~  131 (354)
T PRK05446         61 DSFPQEDFDPPHNLMMQIFESQGI---KFDEVLICPHFPEDNCSCRKPKTGLVEEYLAEGAIDLANSYVIGDRE  131 (354)
T ss_pred             ccccHHHHhhHHHHHHHHHHHcCC---ceeeEEEeCCcCcccCCCCCCCHHHHHHHHHHcCCCcccEEEEcCCH
Confidence                      34556666665544   364323432    333221      1111233456789999999996

>TIGR02254 YjjG/YfnB HAD superfamily (subfamily IA) hydrolase, TIGR02254

Probab=97.03  E-value=0.00096  Score=59.68  Aligned_cols=79  Identities=15%  Similarity=0.145  Sum_probs=65.3

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCC-CCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLV-RGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l-~~~~~~  186 (326)
                      .++++||+.++|+++.+.+.++|-|++.+.+++.+++.++-. .+|. .+++.++...      .+.+-++++ +.+++.
T Consensus        95 ~~~~~~g~~~~L~~l~~~~~~~i~Sn~~~~~~~~~l~~~~l~-~~fd-~i~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~  172 (224)
T TIGR02254        95 GHQLLPGAFELMENLQQKFRLYIVTNGVRETQYKRLRKSGLF-PFFD-DIFVSEDAGIQKPDKEIFNYALERMPKFSKEE  172 (224)
T ss_pred             cCeeCccHHHHHHHHHhcCcEEEEeCCchHHHHHHHHHCCcH-hhcC-EEEEcCccCCCCCCHHHHHHHHHHhcCCCchh
Confidence            368999999999999877999999999999999999998776 5786 5777666542      245556777 778899


Q ss_pred             EEEEeCCc
Q 040058          187 IVILDDTE  194 (326)
Q Consensus       187 vvIvDD~~  194 (326)
                      +|+|+|++
T Consensus       173 ~v~igD~~  180 (224)
T TIGR02254       173 VLMIGDSL  180 (224)
T ss_pred             eEEECCCc
Confidence            99999986

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549). Most likely, these enzymes are phosphatases.

>PRK11009 aphA acid phosphatase/phosphotransferase; Provisional

Probab=97.00  E-value=0.0011  Score=61.61  Aligned_cols=137  Identities=11%  Similarity=0.096  Sum_probs=76.2

Q ss_pred             cccCceEEEEeCCCceeeecccCCCCccchhhhcccccc--ccc---eeeccceEEEEeCccHHHHHHHhh-cCceEEEE
Q 040058           64 QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSF--IGS---LFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLC  137 (326)
Q Consensus        64 ~~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~--~~~---l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~Iy  137 (326)
                      +.++++.+++|+|+|+++++...-.. .+ .+.....++  ...   .+......+..+.||+.+||+.+. +-++|++-
T Consensus        59 ~~~~p~av~~DIDeTvldnsp~~~~~-~~-~f~~~~~~y~~~~~fw~~y~~~~~~~a~p~~Ga~elL~~L~~~G~~I~iV  136 (237)
T PRK11009         59 EGRPPMAVGFDIDDTVLFSSPGFWRG-KK-TFSPGSEDYLKNQKFWEKMNNGWDEFSIPKEVARQLIDMHVKRGDSIYFI  136 (237)
T ss_pred             cCCCCcEEEEECcCccccCCchheee-ee-ccCCCcccccChHHHHHHHHhcccccCcchHHHHHHHHHHHHCCCeEEEE
Confidence            34667899999999999986432111 11 110000000  000   011111334667778999999995 55999999


Q ss_pred             cC----CcHHHHHHHHHHhCC-CCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEE
Q 040058          138 TM----STRCYAEAAVKLLDL-DSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       138 T~----g~~~YA~~v~~~LDP-~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      |+    ....+++.+++.++- ...+|. -+++.++. ...-|. ..+ .....+|+|.|+..=.......++.
T Consensus       137 TnR~~~k~~~t~~~Llk~~gip~~~~f~-vil~gd~~-~K~~K~-~~l-~~~~i~I~IGDs~~Di~aA~~AGi~  206 (237)
T PRK11009        137 TGRTATKTETVSKTLADDFHIPADNMNP-VIFAGDKP-GQYTKT-QWL-KKKNIRIFYGDSDNDITAAREAGAR  206 (237)
T ss_pred             eCCCCcccHHHHHHHHHHcCCCccccee-EEEcCCCC-CCCCHH-HHH-HhcCCeEEEcCCHHHHHHHHHcCCc
Confidence            99    457789999986665 235675 46655532 111111 111 1233488899986444323334443

>PRK10563 6-phosphogluconate phosphatase; Provisional

Probab=97.00  E-value=0.00035  Score=62.97  Aligned_cols=92  Identities=9%  Similarity=0.084  Sum_probs=70.7

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      .+.+.||+.++|+.+.  +.+.|.|++.+.+++.+++..+-. .+|...+++.++...      .+..-+++++..++.+
T Consensus        86 ~~~~~~gv~~~L~~L~--~~~~ivTn~~~~~~~~~l~~~~l~-~~F~~~v~~~~~~~~~KP~p~~~~~a~~~~~~~p~~~  162 (221)
T PRK10563         86 ELEPIAGANALLESIT--VPMCVVSNGPVSKMQHSLGKTGML-HYFPDKLFSGYDIQRWKPDPALMFHAAEAMNVNVENC  162 (221)
T ss_pred             cCCcCCCHHHHHHHcC--CCEEEEeCCcHHHHHHHHHhcChH-HhCcceEeeHHhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            4678899999999994  899999999999999999988776 578655777665542      1344556677788899


Q ss_pred             EEEeCCchhhccCCCCeEEeC
Q 040058          188 VILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I~I~  208 (326)
                      |+|+|++.-.......++++-
T Consensus       163 l~igDs~~di~aA~~aG~~~i  183 (221)
T PRK10563        163 ILVDDSSAGAQSGIAAGMEVF  183 (221)
T ss_pred             EEEeCcHhhHHHHHHCCCEEE
Confidence            999999876654445565543

>PLN02954 phosphoserine phosphatase

Probab=96.93  E-value=0.00063  Score=61.33  Aligned_cols=50  Identities=18%  Similarity=0.382  Sum_probs=41.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC-ccccceEE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS-KYFSSRII  164 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~-~~F~~Ri~  164 (326)
                      ..++||+.++|+.+.+. +.++|-|++.+.+++.+++.++-.. .+|.+++.
T Consensus        83 ~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~~~~~~~~~~~  134 (224)
T PLN02954         83 PRLSPGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIPPENIFANQIL  134 (224)
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCChhhEEEeEEE
Confidence            56889999999999765 8999999999999999999987542 46765443

>TIGR01663 PNK-3'Pase polynucleotide 5'-kinase 3'-phosphatase

Probab=96.89  E-value=0.0026  Score=65.59  Aligned_cols=106  Identities=18%  Similarity=0.120  Sum_probs=71.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH--
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR--  142 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~--  142 (326)
                      .+..++.||+||||+.+.....      +.....     +        |..+-||+.+.|+++.+. |.|+|+|+...  
T Consensus       166 ~~~Kia~fD~DGTLi~t~sg~~------~~~~~~-----d--------~~~l~pgV~e~L~~L~~~Gy~IvIvTNQ~gI~  226 (526)
T TIGR01663       166 GQEKIAGFDLDGTIIKTKSGKV------FPKGPD-----D--------WQIIFPEIPEKLKELEADGFKICIFTNQGGIA  226 (526)
T ss_pred             ccCcEEEEECCCCccccCCCcc------CCCCHH-----H--------eeecccCHHHHHHHHHHCCCEEEEEECCcccc
Confidence            6678999999999997653211      111100     1        223579999999999876 99999999777  


Q ss_pred             ----------HHHHHHHHHhCCCCccccceEEeecCCCCC---------ccccCC-CCCCCCCcEEEEeCCc
Q 040058          143 ----------CYAEAAVKLLDLDSKYFSSRIIAREDFNGK---------DRKNPD-LVRGQERGIVILDDTE  194 (326)
Q Consensus       143 ----------~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~---------~~KdL~-~l~~~~~~vvIvDD~~  194 (326)
                                ..+..+++.++-.   |. -+++.+++..+         ..+++. .++.+++..++|.|+.
T Consensus       227 ~G~~~~~~~~~ki~~iL~~lgip---fd-viia~~~~~~RKP~pGm~~~a~~~~~~~~~Id~~~S~~VGDaa  294 (526)
T TIGR01663       227 RGKINADDFKAKIEAIVAKLGVP---FQ-VFIAIGAGFYRKPLTGMWDHLKEEANDGTEIQEDDCFFVGDAA  294 (526)
T ss_pred             cCcccHHHHHHHHHHHHHHcCCc---eE-EEEeCCCCCCCCCCHHHHHHHHHhcCcccCCCHHHeEEeCCcc
Confidence                      5688888888753   65 46655554321         112222 1235788999999997

Note that the EC number for the kinase function is: 2.7.1.78

>PRK09449 dUMP phosphatase; Provisional

Probab=96.89  E-value=0.0016  Score=58.77  Aligned_cols=78  Identities=12%  Similarity=0.112  Sum_probs=63.0

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCC-CCCcE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRG-QERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~-~~~~v  187 (326)
                      +.+.||+.++|+.+.+.|.+.|.|++.+.+++.+++.++.. .+|. .+++.++...      .+.+-+++++. +.+.+
T Consensus        94 ~~~~~g~~~~L~~L~~~~~~~i~Tn~~~~~~~~~l~~~~l~-~~fd-~v~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  171 (224)
T PRK09449         94 CTPLPGAVELLNALRGKVKMGIITNGFTELQQVRLERTGLR-DYFD-LLVISEQVGVAKPDVAIFDYALEQMGNPDRSRV  171 (224)
T ss_pred             CccCccHHHHHHHHHhCCeEEEEeCCcHHHHHHHHHhCChH-HHcC-EEEEECccCCCCCCHHHHHHHHHHcCCCCcccE
Confidence            57899999999999988999999999999999999998876 5786 5777776543      13445666764 45789


Q ss_pred             EEEeCCc
Q 040058          188 VILDDTE  194 (326)
Q Consensus       188 vIvDD~~  194 (326)
                      ++|+|++
T Consensus       172 ~~vgD~~  178 (224)
T PRK09449        172 LMVGDNL  178 (224)
T ss_pred             EEEcCCc
Confidence            9999996

>TIGR01459 HAD-SF-IIA-hyp4 HAD-superfamily class IIA hydrolase, TIGR01459

Probab=96.86  E-value=0.0013  Score=60.55  Aligned_cols=95  Identities=15%  Similarity=0.101  Sum_probs=66.2

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA  145 (326)
                      +-..+++|+||||++..                                ..-||+.++|+++.+. +.+.|.|++++..+
T Consensus         7 ~~~~~~~D~dG~l~~~~--------------------------------~~~pga~e~L~~L~~~G~~~~ivTN~~~~~~   54 (242)
T TIGR01459         7 DYDVFLLDLWGVIIDGN--------------------------------HTYPGAVQNLNKIIAQGKPVYFVSNSPRNIF   54 (242)
T ss_pred             cCCEEEEecccccccCC--------------------------------ccCccHHHHHHHHHHCCCEEEEEeCCCCChH
Confidence            34468899999998764                                3579999999999865 99999999999887


Q ss_pred             H--HHHHHhCCCCccccceEEeecCCCCCccc-cCCCCCCCCCcEEEEeCCc
Q 040058          146 E--AAVKLLDLDSKYFSSRIIAREDFNGKDRK-NPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       146 ~--~v~~~LDP~~~~F~~Ri~sRd~~~~~~~K-dL~~l~~~~~~vvIvDD~~  194 (326)
                      +  +.++.++....+|. -|++.++....+.. -++.++...+.+++|-|++
T Consensus        55 ~~~~~L~~~gl~~~~~~-~Ii~s~~~~~~~l~~~~~~~~~~~~~~~~vGd~~  105 (242)
T TIGR01459        55 SLHKTLKSLGINADLPE-MIISSGEIAVQMILESKKRFDIRNGIIYLLGHLE  105 (242)
T ss_pred             HHHHHHHHCCCCccccc-eEEccHHHHHHHHHhhhhhccCCCceEEEeCCcc
Confidence            7  67788877632566 47765543222221 1233444556677777754

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram negative and primarily alpha proteobacteria. Only one sequence hase been annotated as other than "hypothetical." That one, from Brucella, is annotated as related to NagD, but only by sequence similarity and should be treated with some skepticism. (See comments for Class IIA subfamily)

>KOG3109 consensus Haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=96.84  E-value=0.00091  Score=61.13  Aligned_cols=82  Identities=22%  Similarity=0.247  Sum_probs=61.7

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------------CccccCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------------KDRKNPDLVRG  182 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------------~~~KdL~~l~~  182 (326)
                      +|.-|-|++||-.|.+.+ .++||+|.+..|..+++.|... ..|.+ |++-+-...            .+.|-....+-
T Consensus        99 LkPD~~LRnlLL~l~~r~-k~~FTNa~k~HA~r~Lk~LGie-DcFeg-ii~~e~~np~~~~~vcKP~~~afE~a~k~agi  175 (244)
T KOG3109|consen   99 LKPDPVLRNLLLSLKKRR-KWIFTNAYKVHAIRILKKLGIE-DCFEG-IICFETLNPIEKTVVCKPSEEAFEKAMKVAGI  175 (244)
T ss_pred             cCCCHHHHHHHHhCcccc-EEEecCCcHHHHHHHHHHhChH-Hhccc-eeEeeccCCCCCceeecCCHHHHHHHHHHhCC
Confidence            677778999999999888 9999999999999999999998 45874 654443321            12233333444


Q ss_pred             -CCCcEEEEeCCchhhcc
Q 040058          183 -QERGIVILDDTESVWSD  199 (326)
Q Consensus       183 -~~~~vvIvDD~~~vw~~  199 (326)
                       ++.+++++||+......
T Consensus       176 ~~p~~t~FfDDS~~NI~~  193 (244)
T KOG3109|consen  176 DSPRNTYFFDDSERNIQT  193 (244)
T ss_pred             CCcCceEEEcCchhhHHH
Confidence             48899999999876643

>TIGR01422 phosphonatase phosphonoacetaldehyde hydrolase

Probab=96.84  E-value=0.0011  Score=61.12  Aligned_cols=92  Identities=15%  Similarity=0.021  Sum_probs=70.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCC-CCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRG-QERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~-~~~~  186 (326)
                      +.+.||+.++|+.+.+. +.+.|-|++++.+++.+++.++-.+ +|.+.+++.++...      .+.+-+++++. +++.
T Consensus        98 ~~~~pg~~e~L~~L~~~g~~l~IvT~~~~~~~~~~l~~~gl~~-~f~d~ii~~~~~~~~KP~p~~~~~a~~~l~~~~~~~  176 (253)
T TIGR01422        98 SSPIPGVIEVIAYLRARGIKIGSTTGYTREMMDVVAPEAALQG-YRPDYNVTTDDVPAGRPAPWMALKNAIELGVYDVAA  176 (253)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHHHHhcC-CCCceEEccccCCCCCCCHHHHHHHHHHcCCCCchh
Confidence            57899999999999765 9999999999999999999988774 55346888777542      24455666776 4889


Q ss_pred             EEEEeCCchhhccCCCCeEEe
Q 040058          187 IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +|+|.|++.-......+++..
T Consensus       177 ~l~IGDs~~Di~aA~~aGi~~  197 (253)
T TIGR01422       177 CVKVGDTVPDIEEGRNAGMWT  197 (253)
T ss_pred             eEEECCcHHHHHHHHHCCCeE
Confidence            999999985444334555544

This enzyme is a member of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases (pfam00702), and contains a modified version of the conserved catalytic motifs of that superfamily: the first motif is usually DxDx(T/V), here it is DxAxT, and in the third motif the normal conserved lysine is instead an arginine. Additionally, the enzyme contains a unique conserved catalytic lysine (B. cereus pos. 53) which is involved in the binding and activation of the substrate through the formation of a Schiff base. The substrate of this enzyme is the product of 2-aminoethylphosphonate (AEP) transaminase, phosphonoacetaldehyde. This degradation pathway for AEP may be related to its toxic properties which are utilized by microorganisms as a chemical warfare agent.

>PRK08238 hypothetical protein; Validated

Probab=96.74  E-value=0.0015  Score=66.65  Aligned_cols=86  Identities=23%  Similarity=0.347  Sum_probs=60.3

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC--ccccC---CCCCCCCCcEEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK--DRKNP---DLVRGQERGIVI  189 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~--~~KdL---~~l~~~~~~vvI  189 (326)
                      ..+|++.++|+++.+. +.+.|-|++.+.+++++++.++-    |. .+++.++....  ..|-.   +.+  +.+.++.
T Consensus        72 p~~pga~e~L~~lk~~G~~v~LaTas~~~~a~~i~~~lGl----Fd-~Vigsd~~~~~kg~~K~~~l~~~l--~~~~~~y  144 (479)
T PRK08238         72 PYNEEVLDYLRAERAAGRKLVLATASDERLAQAVAAHLGL----FD-GVFASDGTTNLKGAAKAAALVEAF--GERGFDY  144 (479)
T ss_pred             CCChhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCC----CC-EEEeCCCccccCCchHHHHHHHHh--CccCeeE
Confidence            5889999999999765 99999999999999999998854    65 57765544321  11211   112  2345778


Q ss_pred             EeCCc---hhhccCCCCeEEeCc
Q 040058          190 LDDTE---SVWSDHTENLIVLGK  209 (326)
Q Consensus       190 vDD~~---~vw~~~~~N~I~I~~  209 (326)
                      +.|+.   .+|.. -+|.+.|.|
T Consensus       145 vGDS~~Dlp~~~~-A~~av~Vn~  166 (479)
T PRK08238        145 AGNSAADLPVWAA-ARRAIVVGA  166 (479)
T ss_pred             ecCCHHHHHHHHh-CCCeEEECC
Confidence            88887   46654 567777764

>PRK10826 2-deoxyglucose-6-phosphatase; Provisional

Probab=96.72  E-value=0.0011  Score=59.80  Aligned_cols=91  Identities=20%  Similarity=0.148  Sum_probs=70.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      ..+.||+.++|+.+.+. +.++|.|++.+..++.+++.++-. .+|. .+++.++...      .+..-++.++.+++.+
T Consensus        91 ~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  168 (222)
T PRK10826         91 RPLLPGVREALALCKAQGLKIGLASASPLHMLEAVLTMFDLR-DYFD-ALASAEKLPYSKPHPEVYLNCAAKLGVDPLTC  168 (222)
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHhCcch-hccc-EEEEcccCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            57889999999999865 999999999999999999998876 5787 5777776532      2344456677888999


Q ss_pred             EEEeCCchhhccCCCCeEEe
Q 040058          188 VILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I~I  207 (326)
                      ++|+|+..-.......+++.
T Consensus       169 ~~igDs~~Di~aA~~aG~~~  188 (222)
T PRK10826        169 VALEDSFNGMIAAKAARMRS  188 (222)
T ss_pred             EEEcCChhhHHHHHHcCCEE
Confidence            99999996665434445443

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=96.69  E-value=0.001  Score=58.20  Aligned_cols=89  Identities=19%  Similarity=0.214  Sum_probs=67.3

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +.+-|++ +.|+.+.+.+.+.|-|++.+.+++.+++.++-. .||. .|++.++...      .+..-+++++.+++.+|
T Consensus        87 ~~~~~~~-e~L~~L~~~~~l~I~T~~~~~~~~~~l~~~~l~-~~fd-~i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l  163 (188)
T PRK10725         87 VEPLPLI-EVVKAWHGRRPMAVGTGSESAIAEALLAHLGLR-RYFD-AVVAADDVQHHKPAPDTFLRCAQLMGVQPTQCV  163 (188)
T ss_pred             CCCccHH-HHHHHHHhCCCEEEEcCCchHHHHHHHHhCCcH-hHce-EEEehhhccCCCCChHHHHHHHHHcCCCHHHeE
Confidence            4566864 899999877999999999999999999998876 5787 5888877643      13444556777888999


Q ss_pred             EEeCCchhhccCCCCeEE
Q 040058          189 ILDDTESVWSDHTENLIV  206 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I~  206 (326)
                      +|+|++.-......++++
T Consensus       164 ~igDs~~di~aA~~aG~~  181 (188)
T PRK10725        164 VFEDADFGIQAARAAGMD  181 (188)
T ss_pred             EEeccHhhHHHHHHCCCE
Confidence            999997655443444443

>PF00533 BRCT: BRCA1 C Terminus (BRCT) domain; InterPro: IPR001357 The BRCT domain (after the C_terminal domain of a breast cancer susceptibility protein) is found predominantly in proteins involved in cell cycle checkpoint functions responsive to DNA damage [], for example as found in the breast cancer DNA-repair protein BRCA1

Probab=96.58  E-value=0.0053  Score=45.61  Aligned_cols=45  Identities=18%  Similarity=0.202  Sum_probs=32.8

Q ss_pred             hccC-CCcEEEEcCccch---HHHHHHH----------------------------HHHhhhCCceEEchHHHHHHH
Q 040058          269 RSEF-SRDVLYFSAIFRD---CLWAEQE----------------------------EKFLVQEKKFLVHPRWIDAYY  313 (326)
Q Consensus       269 r~~v-~g~~ivfs~~~p~---~~~~~ae----------------------------a~~a~~~~~~vV~p~Wl~~~~  313 (326)
                      +..+ +||.++|++.-+.   .+.++++                            .+.|...|+++|+|.||.+|+
T Consensus         2 ~~~~F~g~~f~i~~~~~~~~~~l~~~i~~~GG~v~~~~~~~~thvI~~~~~~~~~k~~~~~~~~i~iV~~~Wi~~ci   78 (78)
T PF00533_consen    2 KPKIFEGCTFCISGFDSDEREELEQLIKKHGGTVSNSFSKKTTHVIVGNPNKRTKKYKAAIANGIPIVSPDWIEDCI   78 (78)
T ss_dssp             STTTTTTEEEEESSTSSSHHHHHHHHHHHTTEEEESSSSTTSSEEEESSSHCCCHHHHHHHHTTSEEEETHHHHHHH
T ss_pred             CCCCCCCEEEEEccCCCCCHHHHHHHHHHcCCEEEeecccCcEEEEeCCCCCccHHHHHHHHCCCeEecHHHHHHhC
Confidence            3566 8888888544333   5666665                            245677899999999999995

The domain is an approximately 100 amino acid tandem repeat, which appears to act as a phospho-protein binding domain []. A chitin biosynthesis protein from yeast also seems to belong to this group. ; GO: 0005622 intracellular; PDB: 3L46_A 3AL3_A 3AL2_A 1WF6_A 3II6_X 2NTE_B 3FA2_A 2R1Z_A 2COK_A 2K7F_A ....

>PRK13226 phosphoglycolate phosphatase; Provisional

Probab=96.57  E-value=0.0023  Score=58.40  Aligned_cols=91  Identities=11%  Similarity=0.020  Sum_probs=69.2

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|-|++...++..+++.++-. .+|. .+++.++....      +.+-+++++.+++.
T Consensus        93 ~~~~~pg~~~~L~~L~~~g~~l~i~Tn~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~KP~p~~~~~~~~~l~~~p~~  170 (229)
T PRK13226         93 QSQLFDGVEGMLQRLECAGCVWGIVTNKPEYLARLILPQLGWE-QRCA-VLIGGDTLAERKPHPLPLLVAAERIGVAPTD  170 (229)
T ss_pred             cCeeCCCHHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHcCch-hccc-EEEecCcCCCCCCCHHHHHHHHHHhCCChhh
Confidence            468999999999999866 899999999999999999988776 4676 46666654321      44556667888899


Q ss_pred             EEEEeCCchhhccCCCCeEE
Q 040058          187 IVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~  206 (326)
                      +++|+|++.-.......++.
T Consensus       171 ~l~IGDs~~Di~aA~~aG~~  190 (229)
T PRK13226        171 CVYVGDDERDILAARAAGMP  190 (229)
T ss_pred             EEEeCCCHHHHHHHHHCCCc
Confidence            99999998655433344443

>PRK11587 putative phosphatase; Provisional

Probab=96.54  E-value=0.0029  Score=57.15  Aligned_cols=90  Identities=13%  Similarity=0.019  Sum_probs=66.4

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|-|++++.++..+++...-.  +|. -+++.++...      .+.+-+++++..++.
T Consensus        81 ~~~~~pg~~e~L~~L~~~g~~~~ivTn~~~~~~~~~l~~~~l~--~~~-~i~~~~~~~~~KP~p~~~~~~~~~~g~~p~~  157 (218)
T PRK11587         81 GITALPGAIALLNHLNKLGIPWAIVTSGSVPVASARHKAAGLP--APE-VFVTAERVKRGKPEPDAYLLGAQLLGLAPQE  157 (218)
T ss_pred             CceeCcCHHHHHHHHHHcCCcEEEEcCCCchHHHHHHHhcCCC--Ccc-EEEEHHHhcCCCCCcHHHHHHHHHcCCCccc
Confidence            467899999999999755 999999999999988888766642  354 4777665432      245556677888999


Q ss_pred             EEEEeCCchhhccCCCCeEE
Q 040058          187 IVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~  206 (326)
                      +++|+|++.-.......++.
T Consensus       158 ~l~igDs~~di~aA~~aG~~  177 (218)
T PRK11587        158 CVVVEDAPAGVLSGLAAGCH  177 (218)
T ss_pred             EEEEecchhhhHHHHHCCCE
Confidence            99999998544433444544

>PRK13222 phosphoglycolate phosphatase; Provisional

Probab=96.51  E-value=0.0041  Score=55.72  Aligned_cols=83  Identities=14%  Similarity=0.180  Sum_probs=64.7

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      ...++||+.+||+.+.+. +.++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-+++++.+.+.
T Consensus        91 ~~~~~~g~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~  168 (226)
T PRK13222         91 GSRLYPGVKETLAALKAAGYPLAVVTNKPTPFVAPLLEALGIA-DYFS-VVIGGDSLPNKKPDPAPLLLACEKLGLDPEE  168 (226)
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHcCCc-cCcc-EEEcCCCCCCCCcChHHHHHHHHHcCCChhh
Confidence            467999999999999865 999999999999999999998876 5676 57766554321      23344566778899


Q ss_pred             EEEEeCCchhhc
Q 040058          187 IVILDDTESVWS  198 (326)
Q Consensus       187 vvIvDD~~~vw~  198 (326)
                      +++|+|++.-..
T Consensus       169 ~i~igD~~~Di~  180 (226)
T PRK13222        169 MLFVGDSRNDIQ  180 (226)
T ss_pred             eEEECCCHHHHH
Confidence            999999975443

>COG1011 Predicted hydrolase (HAD superfamily) [General function prediction only]

Probab=96.50  E-value=0.0039  Score=55.95  Aligned_cols=81  Identities=15%  Similarity=0.092  Sum_probs=66.8

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +..-|++.++|+.+.+.|.+.|.|||...++...++.+.- ..+|.. +++.++.+.      .+..-+++++.+++.++
T Consensus        98 ~~~~~~~~~~L~~l~~~~~l~ilTNg~~~~~~~~l~~~gl-~~~Fd~-v~~s~~~g~~KP~~~~f~~~~~~~g~~p~~~l  175 (229)
T COG1011          98 LPDYPEALEALKELGKKYKLGILTNGARPHQERKLRQLGL-LDYFDA-VFISEDVGVAKPDPEIFEYALEKLGVPPEEAL  175 (229)
T ss_pred             CccChhHHHHHHHHHhhccEEEEeCCChHHHHHHHHHcCC-hhhhhe-EEEecccccCCCCcHHHHHHHHHcCCCcceEE
Confidence            6889999999999998899999999999999999999884 478985 666676652      14445666788899999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      .|||+...-
T Consensus       176 ~VgD~~~~d  184 (229)
T COG1011         176 FVGDSLEND  184 (229)
T ss_pred             EECCChhhh
Confidence            999998644

>TIGR02009 PGMB-YQAB-SF beta-phosphoglucomutase family hydrolase

Probab=96.47  E-value=0.0015  Score=56.66  Aligned_cols=87  Identities=16%  Similarity=0.227  Sum_probs=63.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++  .+++.+++.++-. .+|.. +++.++...      .+.+-+++++..++.+
T Consensus        87 ~~~~~g~~~~l~~l~~~g~~i~i~S~~--~~~~~~l~~~~l~-~~f~~-v~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  162 (185)
T TIGR02009        87 AEVLPGIENFLKRLKKKGIAVGLGSSS--KNADRILAKLGLT-DYFDA-IVDADEVKEGKPHPETFLLAAELLGVSPNEC  162 (185)
T ss_pred             CCCCcCHHHHHHHHHHcCCeEEEEeCc--hhHHHHHHHcChH-HHCCE-eeehhhCCCCCCChHHHHHHHHHcCCCHHHe
Confidence            67999999999999765 999999988  7899999987776 57874 666555432      1334455667778899


Q ss_pred             EEEeCCchhhccCCCCeE
Q 040058          188 VILDDTESVWSDHTENLI  205 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I  205 (326)
                      |+|+|++.-......+++
T Consensus       163 v~IgD~~~di~aA~~~G~  180 (185)
T TIGR02009       163 VVFEDALAGVQAARAAGM  180 (185)
T ss_pred             EEEeCcHhhHHHHHHCCC
Confidence            999999754433333444

All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).

>TIGR01670 YrbI-phosphatas 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase, YrbI family

Probab=96.43  E-value=0.0034  Score=54.06  Aligned_cols=103  Identities=13%  Similarity=0.085  Sum_probs=66.2

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..++||+||||+.....-  ...        .   ..      .-++.++|+.  -|+++.+. +.+.|.|++.+..+..
T Consensus         2 ~~~~~D~Dgtl~~~~~~~--~~~--------~---~~------~~~~~~~~~~--~i~~Lk~~G~~i~IvTn~~~~~~~~   60 (154)
T TIGR01670         2 RLLILDVDGVLTDGKIYY--TNN--------G---EE------IKAFNVRDGY--GIRCALKSGIEVAIITGRKAKLVED   60 (154)
T ss_pred             eEEEEeCceeEEcCeEEE--CCC--------C---cE------EEEEechhHH--HHHHHHHCCCEEEEEECCCCHHHHH
Confidence            367899999999642210  000        0   00      1123678876  68888765 9999999999999999


Q ss_pred             HHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhh
Q 040058          148 AVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       148 v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw  197 (326)
                      +++.+... .+|...    ..-.....+-++.++-+++.++.|-|+..=.
T Consensus        61 ~l~~~gi~-~~~~~~----~~k~~~~~~~~~~~~~~~~~~~~vGDs~~D~  105 (154)
T TIGR01670        61 RCKTLGIT-HLYQGQ----SNKLIAFSDILEKLALAPENVAYIGDDLIDW  105 (154)
T ss_pred             HHHHcCCC-EEEecc----cchHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence            99998876 455421    1111112233345566778899999987433

The Methanosarcina sequence is distinctive in that it is linked to an N-terminal cytidylyltransferase domain (pfam02348) and is annotated as acylneuraminate cytidylyltransferase. This may give some clue as the function of these phosphatases. Several eukaryotic sequences scoring between trusted and noise are also closely related to this function such as the CMP-N-acetylneuraminic acid synthetase from mouse, but in these cases the phosphatase domain is clearly inactive as many of the active site residues are not conserved.

>PRK09456 ?-D-glucose-1-phosphatase; Provisional

Probab=96.42  E-value=0.0018  Score=57.61  Aligned_cols=95  Identities=13%  Similarity=-0.011  Sum_probs=68.0

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      ++..+.||+.++|+.+.+. |.++|-|++.+..+...+.....-..+|. .+++.++.+.      .+..-+++++.+++
T Consensus        81 ~~~~~~~g~~e~L~~l~~~g~~~~i~Sn~~~~~~~~~~~~~~~l~~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~~~~p~  159 (199)
T PRK09456         81 VFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEVRAAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSAA  159 (199)
T ss_pred             HHhccCHHHHHHHHHHHhCCCcEEEEcCCchhhHHHHHhhchhHHHhcC-EEEEecccCCCCCCHHHHHHHHHHcCCChh
Confidence            4467899999999999765 99999999998876655433211235676 5777676653      14555677888999


Q ss_pred             cEEEEeCCchhhccCCCCeEEeC
Q 040058          186 GIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      .+++|||++.-.......++..-
T Consensus       160 ~~l~vgD~~~di~aA~~aG~~~i  182 (199)
T PRK09456        160 DAVFFDDNADNIEAANALGITSI  182 (199)
T ss_pred             HeEEeCCCHHHHHHHHHcCCEEE
Confidence            99999999865544455666553

>PF08645 PNK3P: Polynucleotide kinase 3 phosphatase; InterPro: IPR013954 Polynucleotide kinase 3 phosphatases play a role in the repair of single breaks in DNA induced by DNA-damaging agents such as gamma radiation and camptothecin []

Probab=96.24  E-value=0.0059  Score=53.22  Aligned_cols=53  Identities=19%  Similarity=0.152  Sum_probs=34.7

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS  140 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g  140 (326)
                      +++.+|||||||.+......+.      ...     +        +..+-|++.+-|+++.+. |.|+|+|+.
T Consensus         1 Kia~fD~DgTLi~~~s~~~f~~------~~~-----D--------~~~~~~~v~~~L~~l~~~Gy~IvIvTNQ   54 (159)
T PF08645_consen    1 KIAFFDLDGTLIKTKSGKKFPK------DPD-----D--------WKFFPPGVPEALRELHKKGYKIVIVTNQ   54 (159)
T ss_dssp             SEEEE-SCTTTEE-STSTTS-S------STC-----G--------GEEC-TTHHHHHHHHHHTTEEEEEEEE-
T ss_pred             CEEEEeCCCCccCCCCCCcCcC------CHH-----H--------hhhcchhHHHHHHHHHhcCCeEEEEeCc
Confidence            3688999999999975432111      011     1        234667999999999875 999999986

; PDB: 2FPW_A 2FPR_A 2FPX_A 2FPS_A 2FPU_B 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B 3U7G_A ....

>PRK13223 phosphoglycolate phosphatase; Provisional

Probab=96.22  E-value=0.0045  Score=58.30  Aligned_cols=90  Identities=16%  Similarity=0.132  Sum_probs=67.4

Q ss_pred             EEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.++||+.++|+.+.+ .+.++|.|++.+.++..+++.++-. .+|. .+++.++....      +.+-+++++.+++.+
T Consensus       100 ~~~~~g~~e~L~~Lk~~g~~l~ivTn~~~~~~~~~l~~~~i~-~~f~-~i~~~d~~~~~Kp~p~~~~~~~~~~g~~~~~~  177 (272)
T PRK13223        100 TVVYPGVRDTLKWLKKQGVEMALITNKPERFVAPLLDQMKIG-RYFR-WIIGGDTLPQKKPDPAALLFVMKMAGVPPSQS  177 (272)
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEECCcHHHHHHHHHHcCcH-hhCe-EEEecCCCCCCCCCcHHHHHHHHHhCCChhHE
Confidence            5689999999999975 4999999999999999999988765 5786 57776665431      223344567788999


Q ss_pred             EEEeCCchhhccCCCCeEE
Q 040058          188 VILDDTESVWSDHTENLIV  206 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I~  206 (326)
                      ++|+|+..-......+++.
T Consensus       178 l~IGD~~~Di~aA~~aGi~  196 (272)
T PRK13223        178 LFVGDSRSDVLAAKAAGVQ  196 (272)
T ss_pred             EEECCCHHHHHHHHHCCCe
Confidence            9999997544433445543

>PLN02779 haloacid dehalogenase-like hydrolase family protein

Probab=96.14  E-value=0.0049  Score=58.53  Aligned_cols=92  Identities=14%  Similarity=0.140  Sum_probs=65.2

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccc-eEEeecCCCC------CccccCCCCCCCCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSS-RIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~-Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      +++.||+.++|+.+.+. +.+.|.|++++.++..+++.+.-. .+|.. .+++.+++..      .+.+-++.++.+++.
T Consensus       143 ~~l~pGv~elL~~L~~~g~~l~IvTn~~~~~~~~~l~~~~~~-~~~~~~~~v~~~~~~~~KP~p~~~~~a~~~~~~~p~~  221 (286)
T PLN02779        143 LPLRPGVLRLMDEALAAGIKVAVCSTSNEKAVSKIVNTLLGP-ERAQGLDVFAGDDVPKKKPDPDIYNLAAETLGVDPSR  221 (286)
T ss_pred             CCchhhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhccc-cccCceEEEeccccCCCCCCHHHHHHHHHHhCcChHH
Confidence            57899999999999765 999999999999999999876311 23331 2335555432      133445667778899


Q ss_pred             EEEEeCCchhhccCCCCeEEe
Q 040058          187 IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +++|+|++.-......+++.+
T Consensus       222 ~l~IGDs~~Di~aA~~aG~~~  242 (286)
T PLN02779        222 CVVVEDSVIGLQAAKAAGMRC  242 (286)
T ss_pred             EEEEeCCHHhHHHHHHcCCEE
Confidence            999999987665444455443

>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]

Probab=96.13  E-value=0.013  Score=51.64  Aligned_cols=111  Identities=17%  Similarity=0.261  Sum_probs=82.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..+|+|||+|||-=.. +                             ..-|-+++-+.++.+. -.+.|.+|+++.-
T Consensus        26 ~Gikgvi~DlDNTLv~wd~-~-----------------------------~~tpe~~~W~~e~k~~gi~v~vvSNn~e~R   75 (175)
T COG2179          26 HGIKGVILDLDNTLVPWDN-P-----------------------------DATPELRAWLAELKEAGIKVVVVSNNKESR   75 (175)
T ss_pred             cCCcEEEEeccCceecccC-C-----------------------------CCCHHHHHHHHHHHhcCCEEEEEeCCCHHH
Confidence            7788999999999995431 1                             2567788889999876 8999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc--hhhccCCCC--eEEeCccc
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE--SVWSDHTEN--LIVLGKYV  211 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~--~vw~~~~~N--~I~I~~y~  211 (326)
                      +..+++.||-+.- ++    .+.-.+..+.|.|..++-+.+.|++|-|+-  |+...|..+  .|.|+|-.
T Consensus        76 V~~~~~~l~v~fi-~~----A~KP~~~~fr~Al~~m~l~~~~vvmVGDqL~TDVlggnr~G~~tIlV~Pl~  141 (175)
T COG2179          76 VARAAEKLGVPFI-YR----AKKPFGRAFRRALKEMNLPPEEVVMVGDQLFTDVLGGNRAGMRTILVEPLV  141 (175)
T ss_pred             HHhhhhhcCCcee-ec----ccCccHHHHHHHHHHcCCChhHEEEEcchhhhhhhcccccCcEEEEEEEec
Confidence            9999999997721 11    111122235677777888999999999996  677655433  57777765

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=96.12  E-value=0.011  Score=52.31  Aligned_cols=77  Identities=14%  Similarity=0.011  Sum_probs=60.5

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcEEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGIVI  189 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~vvI  189 (326)
                      +..|+..++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++...     .+.+-++.++.+.+.+++
T Consensus       106 ~~~~~~~~~L~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~i~  183 (197)
T TIGR01548       106 ETLLTPKGLLRELHRAPKGMAVVTGRPRKDAAKFLTTHGLE-ILFP-VQIWMEDCPPKPNPEPLILAAKALGVEACHAAM  183 (197)
T ss_pred             ccccCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHcCch-hhCC-EEEeecCCCCCcCHHHHHHHHHHhCcCcccEEE
Confidence            3455669999999865 999999999999999999999876 6786 5777666432     133445567778889999


Q ss_pred             EeCCc
Q 040058          190 LDDTE  194 (326)
Q Consensus       190 vDD~~  194 (326)
                      |+|++
T Consensus       184 vGD~~  188 (197)
T TIGR01548       184 VGDTV  188 (197)
T ss_pred             EeCCH
Confidence            99997

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>PRK13478 phosphonoacetaldehyde hydrolase; Provisional

Probab=96.12  E-value=0.0067  Score=56.58  Aligned_cols=92  Identities=17%  Similarity=0.081  Sum_probs=67.9

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCC-CCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQ-ERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~-~~~  186 (326)
                      +.+-||+.++|+.+.+. +.+.|-|++.+..++.+++.+.-.+ +|.+.+++.++...      .+.+-+++++.. .+.
T Consensus       100 ~~~~pg~~elL~~L~~~g~~l~I~T~~~~~~~~~~l~~~~l~~-~~~d~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~~e  178 (267)
T PRK13478        100 ATPIPGVLEVIAALRARGIKIGSTTGYTREMMDVVVPLAAAQG-YRPDHVVTTDDVPAGRPYPWMALKNAIELGVYDVAA  178 (267)
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHHhhcC-CCceEEEcCCcCCCCCCChHHHHHHHHHcCCCCCcc
Confidence            57889999999999765 9999999999999999999877654 44345777776542      134555667764 688


Q ss_pred             EEEEeCCchhhccCCCCeEEe
Q 040058          187 IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +|+|+|++.-.......++..
T Consensus       179 ~l~IGDs~~Di~aA~~aG~~~  199 (267)
T PRK13478        179 CVKVDDTVPGIEEGLNAGMWT  199 (267)
T ss_pred             eEEEcCcHHHHHHHHHCCCEE
Confidence            999999985554334455543

>TIGR01549 HAD-SF-IA-v1 haloacid dehalogenase superfamily, subfamily IA, variant 1 with third motif having Dx(3-4)D or Dx(3-4)E

Probab=96.10  E-value=0.012  Score=49.59  Aligned_cols=78  Identities=9%  Similarity=0.089  Sum_probs=58.4

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcE
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGI  187 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~v  187 (326)
                      .....||+.++|+.+.+. +.+.|.|++.+..+...++.+ - ..+|. .+++.++...     .+.+-+++++.+. .+
T Consensus        62 ~~~~~~g~~e~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~-l-~~~f~-~i~~~~~~~~Kp~~~~~~~~~~~~~~~~-~~  137 (154)
T TIGR01549        62 EEAYIRGAADLLKRLKEAGIKLGIISNGSLRAQKLLLRKH-L-GDYFD-LILGSDEFGAKPEPEIFLAALESLGLPP-EV  137 (154)
T ss_pred             hheeccCHHHHHHHHHHCcCeEEEEeCCchHHHHHHHHHH-H-HhcCc-EEEecCCCCCCcCHHHHHHHHHHcCCCC-CE
Confidence            344569999999999654 999999999999999999985 2 35676 5777776542     1333345566667 89


Q ss_pred             EEEeCCch
Q 040058          188 VILDDTES  195 (326)
Q Consensus       188 vIvDD~~~  195 (326)
                      ++|+|++.
T Consensus       138 l~iGDs~~  145 (154)
T TIGR01549       138 LHVGDNLN  145 (154)
T ss_pred             EEEeCCHH
Confidence            99999963

HAD subfamilies caused by an overly broad single model.

>TIGR01990 bPGM beta-phosphoglucomutase

Probab=96.03  E-value=0.0042  Score=53.90  Aligned_cols=87  Identities=14%  Similarity=0.176  Sum_probs=61.8

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      ..+.||+.++|+.+.+. +.+.|-|++.  .+..+++.++-. .+|. .+++.++...      .+.+-+++++.+++.+
T Consensus        86 ~~~~pg~~~~L~~L~~~g~~~~i~s~~~--~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~  161 (185)
T TIGR01990        86 ADVLPGIKNLLDDLKKNNIKIALASASK--NAPTVLEKLGLI-DYFD-AIVDPAEIKKGKPDPEIFLAAAEGLGVSPSEC  161 (185)
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCc--cHHHHHHhcCcH-hhCc-EEEehhhcCCCCCChHHHHHHHHHcCCCHHHe
Confidence            46889999999999755 9999999875  356788888766 5786 4665555432      1445566677788899


Q ss_pred             EEEeCCchhhccCCCCeE
Q 040058          188 VILDDTESVWSDHTENLI  205 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I  205 (326)
                      |+|+|++.-......+++
T Consensus       162 v~vgD~~~di~aA~~aG~  179 (185)
T TIGR01990       162 IGIEDAQAGIEAIKAAGM  179 (185)
T ss_pred             EEEecCHHHHHHHHHcCC
Confidence            999999754433333443

The enzyme from L. lactis has been extensively characterized including a remarkable crystal structure which traps the pentacoordinate transition state.

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=96.03  E-value=0.01  Score=52.50  Aligned_cols=77  Identities=9%  Similarity=0.070  Sum_probs=58.9

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+-||+.++|+.+++. +.+.|.|++.+.. ..+++.++-. .+|. .+++.++.+.      .+.+-++.++.+++.+
T Consensus       104 ~~~~~g~~~~l~~L~~~g~~~~i~Sn~~~~~-~~~l~~~~l~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~~~~~~~~~  180 (203)
T TIGR02252       104 WQVYPDAIKLLKDLRERGLILGVISNFDSRL-RGLLEALGLL-EYFD-FVVTSYEVGAEKPDPKIFQEALERAGISPEEA  180 (203)
T ss_pred             ceeCcCHHHHHHHHHHCCCEEEEEeCCchhH-HHHHHHCCcH-Hhcc-eEEeecccCCCCCCHHHHHHHHHHcCCChhHE
Confidence            36889999999999875 9999999998764 6777777654 5786 4666565542      1344556678889999


Q ss_pred             EEEeCCc
Q 040058          188 VILDDTE  194 (326)
Q Consensus       188 vIvDD~~  194 (326)
                      ++|+|++
T Consensus       181 ~~IgD~~  187 (203)
T TIGR02252       181 LHIGDSL  187 (203)
T ss_pred             EEECCCc
Confidence            9999986

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

>TIGR01691 enolase-ppase 2,3-diketo-5-methylthio-1-phosphopentane phosphatase

Probab=95.94  E-value=0.0067  Score=55.70  Aligned_cols=91  Identities=16%  Similarity=0.048  Sum_probs=63.6

Q ss_pred             EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhC---CCCccccceEEeecCCCC----CccccCCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLD---LDSKYFSSRIIAREDFNG----KDRKNPDLVRGQER  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LD---P~~~~F~~Ri~sRd~~~~----~~~KdL~~l~~~~~  185 (326)
                      ...+.||+.++|+.+.+ .+.++|+|+++..+...+++..+   -. .+|.. ++....+..    .+.+-++.++.+++
T Consensus        93 ~~~lypgv~e~L~~Lk~~G~~l~I~Sn~s~~~~~~~~~~~~~~~L~-~~f~~-~fd~~~g~KP~p~~y~~i~~~lgv~p~  170 (220)
T TIGR01691        93 TSHLYPDVPPALEAWLQLGLRLAVYSSGSVPAQKLLFGHSDAGNLT-PYFSG-YFDTTVGLKTEAQSYVKIAGQLGSPPR  170 (220)
T ss_pred             ccCcCcCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhhccccchh-hhcce-EEEeCcccCCCHHHHHHHHHHhCcChh
Confidence            35689999999999975 49999999999999998887753   22 35653 342211111    25556677788899


Q ss_pred             cEEEEeCCchhhccCCCCeEE
Q 040058          186 GIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      .+++|+|+..-.......++.
T Consensus       171 e~lfVgDs~~Di~AA~~AG~~  191 (220)
T TIGR01691       171 EILFLSDIINELDAARKAGLH  191 (220)
T ss_pred             HEEEEeCCHHHHHHHHHcCCE
Confidence            999999998655433344443

This enzyme is the enolase-phosphatase of methionine salvage, a pathway that regenerates methionine from methylthioadenosine (MTA). Adenosylmethionine (AdoMet) is a donor of different moieties for various processes, including methylation reactions. Use of AdoMet for spermidine biosynthesis, which leads to polyamine biosynthesis, leaves MTA as a by-product that must be cleared. In Bacillus subtilis and related species, this single protein is replaced by separate enzymes with enolase and phosphatase activities.

>COG0637 Predicted phosphatase/phosphohexomutase [General function prediction only]

Probab=95.93  E-value=0.0053  Score=56.07  Aligned_cols=83  Identities=20%  Similarity=0.193  Sum_probs=69.8

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      -++..||+.+||+++... .-+.+-|++.+.-++.+++.+... .+|...+. +++...      .|.+-+++|+.+++.
T Consensus        84 ~~~~~pGv~~~l~~L~~~~i~~avaS~s~~~~~~~~L~~~gl~-~~f~~~v~-~~dv~~~KP~Pd~yL~Aa~~Lgv~P~~  161 (221)
T COG0637          84 GLKPIPGVVELLEQLKARGIPLAVASSSPRRAAERVLARLGLL-DYFDVIVT-ADDVARGKPAPDIYLLAAERLGVDPEE  161 (221)
T ss_pred             CCCCCccHHHHHHHHHhcCCcEEEecCChHHHHHHHHHHccCh-hhcchhcc-HHHHhcCCCCCHHHHHHHHHcCCChHH
Confidence            468999999999999988 999999999999999999999887 57886444 565543      267778889999999


Q ss_pred             EEEEeCCchhhc
Q 040058          187 IVILDDTESVWS  198 (326)
Q Consensus       187 vvIvDD~~~vw~  198 (326)
                      +|+|+|++.--.
T Consensus       162 CvviEDs~~Gi~  173 (221)
T COG0637         162 CVVVEDSPAGIQ  173 (221)
T ss_pred             eEEEecchhHHH
Confidence            999999986554

>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A

Probab=95.92  E-value=0.015  Score=46.76  Aligned_cols=46  Identities=17%  Similarity=0.194  Sum_probs=36.5

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc----HHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST----RCYA  145 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~----~~YA  145 (326)
                      +++|+||||++..                                ..=||+.+||+.+.+. ..+++.||++    .+|+
T Consensus         1 ~l~D~dGvl~~g~--------------------------------~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~   48 (101)
T PF13344_consen    1 FLFDLDGVLYNGN--------------------------------EPIPGAVEALDALRERGKPVVFLTNNSSRSREEYA   48 (101)
T ss_dssp             EEEESTTTSEETT--------------------------------EE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHH
T ss_pred             CEEeCccEeEeCC--------------------------------CcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHH
Confidence            5799999999853                                3569999999999877 9999999998    4555


Q ss_pred             HHH
Q 040058          146 EAA  148 (326)
Q Consensus       146 ~~v  148 (326)
                      +..
T Consensus        49 ~~L   51 (101)
T PF13344_consen   49 KKL   51 (101)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            555

...

>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal

Probab=95.92  E-value=0.0074  Score=52.98  Aligned_cols=82  Identities=15%  Similarity=0.176  Sum_probs=59.6

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC---C------ccc--c----C
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG---K------DRK--N----P  177 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---~------~~K--d----L  177 (326)
                      .+.++||+.++|+.+.+. +.++|.|++.+.+++.+++.+... .+|.+.+.+.+....   .      ..|  -    +
T Consensus        78 ~~~~~~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~-~~~~~~~~~~~~g~~~p~~~~~~~~~~k~~~~~~~~  156 (201)
T TIGR01491        78 EISLRDYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD-YVYSNELVFDEKGFIQPDGIVRVTFDNKGEAVERLK  156 (201)
T ss_pred             hCCCCccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC-eEEEEEEEEcCCCeEecceeeEEccccHHHHHHHHH
Confidence            357899999999999755 999999999999999999999876 567766654332110   0      011  1    2


Q ss_pred             CCCCCCCCcEEEEeCCchh
Q 040058          178 DLVRGQERGIVILDDTESV  196 (326)
Q Consensus       178 ~~l~~~~~~vvIvDD~~~v  196 (326)
                      +.++.+.+.+++|.|+..-
T Consensus       157 ~~~~~~~~~~i~iGDs~~D  175 (201)
T TIGR01491       157 RELNPSLTETVAVGDSKND  175 (201)
T ss_pred             HHhCCCHHHEEEEcCCHhH
Confidence            2345567889999999743

This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.

>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]

Probab=95.84  E-value=0.0081  Score=54.82  Aligned_cols=50  Identities=10%  Similarity=0.172  Sum_probs=44.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA  165 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s  165 (326)
                      ++++||+.+.++.+.+. +.++|.|.|-..++++|++.+.-+ ..+.+++..
T Consensus        76 ~~l~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d-~~~an~l~~  126 (212)
T COG0560          76 LRLTPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID-YVVANELEI  126 (212)
T ss_pred             CcCCccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc-hheeeEEEE
Confidence            89999999999999877 999999999999999999999988 456665553

>PF12738 PTCB-BRCT: twin BRCT domain; PDB: 3PA6_A 3KTF_C 2WT8_C 3EF1_A 3EF0_A

Probab=95.79  E-value=0.014  Score=42.45  Aligned_cols=34  Identities=24%  Similarity=0.192  Sum_probs=27.2

Q ss_pred             cEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHH
Q 040058          275 DVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRW  308 (326)
Q Consensus       275 ~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~W  308 (326)
                      +.|.|||+.|.   .++++++                          .+.|++.|++||+|+|
T Consensus         1 ~~i~~sg~~~~~~~~l~~~i~~~Gg~~~~~lt~~~THLI~~~~~~~K~~~A~~~gi~vV~~~W   63 (63)
T PF12738_consen    1 VVICFSGFSGKERSQLRKLIEALGGKYSKDLTKKTTHLICSSPEGKKYRKAKEWGIPVVSPDW   63 (63)
T ss_dssp             -EEEEEEB-TTTCCHHHHHHHCTT-EEESSSSTT-SEEEEES--HHHHHHHHHCTSEEEEHHH
T ss_pred             CEEEECCCCHHHHHHHHHHHHHCCCEEeccccCCceEEEEeCCCcHHHHHHHHCCCcEECCCC
Confidence            46888998886   7888877                          3578999999999999

>TIGR02247 HAD-1A3-hyp Epoxide hydrolase N-terminal domain-like phosphatase

Probab=95.75  E-value=0.0042  Score=55.52  Aligned_cols=92  Identities=17%  Similarity=0.011  Sum_probs=61.0

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH--HHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY--AEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQE  184 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y--A~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~  184 (326)
                      .+.+.||+.++|+.+.+. |.+.|.|++...+  +......++-. .+|. .+++.++...      .+.+-+++++.++
T Consensus        92 ~~~~~~~~~~~L~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~l~-~~fd-~v~~s~~~~~~KP~p~~~~~~~~~~g~~~  169 (211)
T TIGR02247        92 NTKLRPSMMAAIKTLRAKGFKTACITNNFPTDHSAEEALLPGDIM-ALFD-AVVESCLEGLRKPDPRIYQLMLERLGVAP  169 (211)
T ss_pred             ccccChhHHHHHHHHHHCCCeEEEEeCCCCccchhhhHhhhhhhH-hhCC-EEEEeeecCCCCCCHHHHHHHHHHcCCCH
Confidence            467899999999999865 9999999997655  32222222222 5676 4665554432      2445566778888


Q ss_pred             CcEEEEeCCchhhccCCCCeEEe
Q 040058          185 RGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       185 ~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +.+++|||++.-.......++..
T Consensus       170 ~~~l~i~D~~~di~aA~~aG~~~  192 (211)
T TIGR02247       170 EECVFLDDLGSNLKPAAALGITT  192 (211)
T ss_pred             HHeEEEcCCHHHHHHHHHcCCEE
Confidence            99999999986554333445543

These appear to be members of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases by general homology and the conservation of all of the recognized catalytic motifs (although the first motif is unusual in the replacement of the more common aspartate with glycine...). The variable domain is found in between motifs 1 and 2, indicating membership in subfamily I and phylogeny and prediction of the alpha helical nature of the variable domain (by PSI-PRED) indicate membership in subfamily IA.

>TIGR01493 HAD-SF-IA-v2 Haloacid dehalogenase superfamily, subfamily IA, variant 2 with 3rd motif like haloacid dehalogenase

Probab=95.54  E-value=0.0038  Score=53.91  Aligned_cols=73  Identities=10%  Similarity=0.061  Sum_probs=59.0

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      .+.+.||+.++|+.      +.|.|++.+.++..+++.+.-. .+|.. +++.++...      .+.+-+++++.+++.+
T Consensus        88 ~~~~~~g~~~~L~~------~~i~Tn~~~~~~~~~l~~~~l~-~~fd~-v~~~~~~~~~KP~p~~f~~~~~~~~~~p~~~  159 (175)
T TIGR01493        88 NLPPWPDSAAALAR------VAILSNASHWAFDQFAQQAGLP-WYFDR-AFSVDTVRAYKPDPVVYELVFDTVGLPPDRV  159 (175)
T ss_pred             cCCCCCchHHHHHH------HhhhhCCCHHHHHHHHHHCCCH-HHHhh-hccHhhcCCCCCCHHHHHHHHHHHCCCHHHe
Confidence            35689999999993      7899999999999999998765 67874 777776442      1455567778889999


Q ss_pred             EEEeCCc
Q 040058          188 VILDDTE  194 (326)
Q Consensus       188 vIvDD~~  194 (326)
                      ++|+|++
T Consensus       160 l~vgD~~  166 (175)
T TIGR01493       160 LMVAAHQ  166 (175)
T ss_pred             EeEecCh
Confidence            9999995

The Subfamily IA and IB capping domains are predicted by PSI-PRED to consist of an alpha helical bundle. Subfamily I encompasses such a wide region of sequence space (the sequences are highly divergent) that modelling it with a single alignment is impossible, resulting in an overly broad description which allows in many unrelated sequences. Subfamily IA and IB are separated based on an aparrent phylogenetic bifurcation. Subfamily IA is still too broad to model, but cannot be further subdivided into large chunks based on phylogenetic trees. Of the three motifs defining the HAD superfamily, the third has three variant forms : (1) hhhhsDxxx(x)D, (2) hhhhssxxx(x)D and (3) hhhhDDxxx(x)s where _s_ refers to a small amino acid and _h_ to a hydrophobic one. All three of these variants are found in subfamily IA. Individual models were made based on seeds exhibiting only o

>PLN02811 hydrolase

Probab=95.46  E-value=0.0089  Score=54.08  Aligned_cols=91  Identities=9%  Similarity=0.066  Sum_probs=61.4

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH-HHHHhCCCCccccceEEeec--CCCC------CccccCCCCC--
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA-AVKLLDLDSKYFSSRIIARE--DFNG------KDRKNPDLVR--  181 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~-v~~~LDP~~~~F~~Ri~sRd--~~~~------~~~KdL~~l~--  181 (326)
                      .+.+.||+.++|+.+++. +.+.|-|++.+.+... ..+..... .+|. .+++.+  +...      .+.+-+++++  
T Consensus        76 ~~~l~~gv~e~l~~L~~~g~~~~i~S~~~~~~~~~~~~~~~~l~-~~f~-~i~~~~~~~~~~~KP~p~~~~~a~~~~~~~  153 (220)
T PLN02811         76 TSDLMPGAERLVRHLHAKGIPIAIATGSHKRHFDLKTQRHGELF-SLMH-HVVTGDDPEVKQGKPAPDIFLAAARRFEDG  153 (220)
T ss_pred             hCCCCccHHHHHHHHHHCCCcEEEEeCCchhhHHHHHcccHHHH-hhCC-EEEECChhhccCCCCCcHHHHHHHHHhCCC
Confidence            356789999999999875 9999999999876654 33222222 4676 577777  5432      1344455554  


Q ss_pred             -CCCCcEEEEeCCchhhccCCCCeEE
Q 040058          182 -GQERGIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       182 -~~~~~vvIvDD~~~vw~~~~~N~I~  206 (326)
                       ..++.+|+|+|+..-......++++
T Consensus       154 ~~~~~~~v~IgDs~~di~aA~~aG~~  179 (220)
T PLN02811        154 PVDPGKVLVFEDAPSGVEAAKNAGMS  179 (220)
T ss_pred             CCCccceEEEeccHhhHHHHHHCCCe
Confidence             6788999999998655433344444

>cd00027 BRCT Breast Cancer Suppressor Protein (BRCA1), carboxy-terminal domain

Probab=95.40  E-value=0.036  Score=39.31  Aligned_cols=20  Identities=15%  Similarity=0.240  Sum_probs=17.2

Q ss_pred             HHhhhCCceEEchHHHHHHH
Q 040058          294 KFLVQEKKFLVHPRWIDAYY  313 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~  313 (326)
                      +.|...|+.||++.||.+|+
T Consensus        52 ~~~~~~~~~iV~~~Wi~~~~   71 (72)
T cd00027          52 LKAIKLGIPIVTPEWLLDCL   71 (72)
T ss_pred             HHHHHcCCeEecHHHHHHHh
Confidence            35667899999999999996

The BRCT domain is found within many DNA damage repair and cell cycle checkpoint proteins. The unique diversity of this domain superfamily allows BRCT modules to interact forming homo/hetero BRCT multimers, BRCT-non-BRCT interactions, and interactions within DNA strand breaks.

>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase

Probab=95.39  E-value=0.036  Score=46.68  Aligned_cols=72  Identities=19%  Similarity=0.148  Sum_probs=49.8

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHH--
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAE--  146 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~--  146 (326)
                      .+++||||||++....+       +.                  .....|.+.+.|+++. +-+++++.|+-......  
T Consensus         3 ~i~~DiDGTL~~~~~~~-------y~------------------~~~~~~~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n   57 (126)
T TIGR01689         3 RLVMDLDNTITLTENGD-------YA------------------NVAPILAVIEKLRHYKALGFEIVISSSRNMRTYEGN   57 (126)
T ss_pred             EEEEeCCCCcccCCCCc-------cc------------------ccccCHHHHHHHHHHHHCCCEEEEECCCCchhhhcc
Confidence            68999999997653111       00                  1247888999999984 56999999988877766  


Q ss_pred             ----------HHHHHhCCCCccccceEEeec
Q 040058          147 ----------AAVKLLDLDSKYFSSRIIARE  167 (326)
Q Consensus       147 ----------~v~~~LDP~~~~F~~Ri~sRd  167 (326)
                                .+.+.|+-.+--|. .|+-|-
T Consensus        58 ~~~i~~~~~~~t~~wL~k~~ipYd-~l~~~k   87 (126)
T TIGR01689        58 VGKINIHTLPIIILWLNQHNVPYD-EIYVGK   87 (126)
T ss_pred             ccccchhhHHHHHHHHHHcCCCCc-eEEeCC
Confidence                      67777877654443 455333

Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.

>TIGR03333 salvage_mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase

Probab=95.33  E-value=0.033  Score=50.27  Aligned_cols=51  Identities=8%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII  164 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~  164 (326)
                      .+.+|||+.+||+.+.+. ..++|.|+|.+.|++++++.+.+...++.+++.
T Consensus        68 ~~~l~pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~~~~~~i~~n~~~  119 (214)
T TIGR03333        68 TAEIREGFREFVAFINEHGIPFYVISGGMDFFVYPLLEGIVEKDRIYCNEAD  119 (214)
T ss_pred             cCcccccHHHHHHHHHHCCCeEEEECCCcHHHHHHHHHhhCCcccEEeceeE
Confidence            478999999999999876 999999999999999999988655445554444

Members of this family are the methionine salvage enzyme MnxX, a member of the HAD-superfamily hydrolases, subfamily IB (see TIGR01488). Members are found in Bacillus subtilis and related species, paired with MtnW (TIGR03332). In most species that recycle methionine from methylthioadenosine, the single protein MtnC replaces the MtnW/MtnX pair. In B. subtilis, mtnX was first known as ykrX.

>smart00292 BRCT breast cancer carboxy-terminal domain

Probab=95.20  E-value=0.038  Score=40.18  Aligned_cols=23  Identities=9%  Similarity=0.011  Sum_probs=18.6

Q ss_pred             HHhhhCCceEEchHHHHHHHHHh
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLW  316 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w  316 (326)
                      +.|...+++||+|.||.+|+..|
T Consensus        58 ~~~~~~~~~iV~~~Wi~~~~~~~   80 (80)
T smart00292       58 LLAIALGIPIVTEDWLLDCLKAG   80 (80)
T ss_pred             HHHHHcCCCCccHHHHHHHHHCc
Confidence            34556789999999999998754

>PRK06698 bifunctional 5'-methylthioadenosine/S-adenosylhomocysteine nucleosidase/phosphatase; Validated

Probab=95.11  E-value=0.02  Score=57.91  Aligned_cols=89  Identities=18%  Similarity=0.228  Sum_probs=64.7

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcE
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGI  187 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~v  187 (326)
                      .+.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++-. .||. .+++.++...     .+.+-++.+  +++.+
T Consensus       328 ~~~l~pG~~e~L~~Lk~~g~~l~IvS~~~~~~~~~~l~~~~l~-~~f~-~i~~~d~v~~~~kP~~~~~al~~l--~~~~~  403 (459)
T PRK06698        328 KGALYPNVKEIFTYIKENNCSIYIASNGLTEYLRAIVSYYDLD-QWVT-ETFSIEQINSLNKSDLVKSILNKY--DIKEA  403 (459)
T ss_pred             CCCcCCCHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHCCcH-hhcc-eeEecCCCCCCCCcHHHHHHHHhc--CcceE
Confidence            367899999999999755 999999999999999999998876 5787 4777766532     122223333  35789


Q ss_pred             EEEeCCchhhccCCCCeEE
Q 040058          188 VILDDTESVWSDHTENLIV  206 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~I~  206 (326)
                      ++|.|++.=.......++.
T Consensus       404 v~VGDs~~Di~aAk~AG~~  422 (459)
T PRK06698        404 AVVGDRLSDINAAKDNGLI  422 (459)
T ss_pred             EEEeCCHHHHHHHHHCCCe
Confidence            9999998544333344443

>PRK09484 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; Provisional

Probab=95.11  E-value=0.015  Score=51.47  Aligned_cols=104  Identities=12%  Similarity=0.036  Sum_probs=62.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCcc-HHHHHHHhhcCceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPF-VRTFLEQASSLVDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPg-l~eFL~~ls~~yEl~IyT~g~~~Y  144 (326)
                      .+...+++|+||||+.....-. ...            ..+     ..+.. |.+ .-+.|+  .+.+++.|.|+.....
T Consensus        19 ~~ikli~~D~Dgtl~~~~i~~~-~~~------------~~~-----~~~~~-~d~~~i~~L~--~~Gi~v~I~T~~~~~~   77 (183)
T PRK09484         19 ENIRLLICDVDGVFSDGLIYMG-NNG------------EEL-----KAFNV-RDGYGIRCLL--TSGIEVAIITGRKSKL   77 (183)
T ss_pred             hCceEEEEcCCeeeecCEEEEc-CCC------------CEE-----EEEec-cchHHHHHHH--HCCCEEEEEeCCCcHH
Confidence            4577899999999998742110 000            000     11112 222 222333  2569999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      +..+++.+.-. .+|.+    .++-.....+-++.++.+.+.+++|-|+..
T Consensus        78 v~~~l~~lgl~-~~f~g----~~~k~~~l~~~~~~~gl~~~ev~~VGDs~~  123 (183)
T PRK09484         78 VEDRMTTLGIT-HLYQG----QSNKLIAFSDLLEKLAIAPEQVAYIGDDLI  123 (183)
T ss_pred             HHHHHHHcCCc-eeecC----CCcHHHHHHHHHHHhCCCHHHEEEECCCHH
Confidence            99999998765 35542    111111223334456777889999988874

>PRK00192 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=95.04  E-value=0.049  Score=50.98  Aligned_cols=57  Identities=26%  Similarity=0.267  Sum_probs=47.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++..                               ...|...+.|+.+.+. +.++|.|.-....+.
T Consensus         4 ~kli~~DlDGTLl~~~~-------------------------------~~~~~~~~ai~~l~~~Gi~~~iaTgR~~~~~~   52 (273)
T PRK00192          4 KLLVFTDLDGTLLDHHT-------------------------------YSYEPAKPALKALKEKGIPVIPCTSKTAAEVE   52 (273)
T ss_pred             ceEEEEcCcccCcCCCC-------------------------------cCcHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            45789999999997531                               2446788899999876 899999999999999


Q ss_pred             HHHHHhCCC
Q 040058          147 AAVKLLDLD  155 (326)
Q Consensus       147 ~v~~~LDP~  155 (326)
                      .+++.++..
T Consensus        53 ~~~~~l~l~   61 (273)
T PRK00192         53 VLRKELGLE   61 (273)
T ss_pred             HHHHHcCCC
Confidence            999988755

>PLN02919 haloacid dehalogenase-like hydrolase family protein

Probab=94.91  E-value=0.028  Score=62.67  Aligned_cols=81  Identities=12%  Similarity=0.154  Sum_probs=65.9

Q ss_pred             eCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEEE
Q 040058          117 LRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVI  189 (326)
Q Consensus       117 lRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvI  189 (326)
                      +.||+.++|++|.+. |.+.|.|++.+.+++.+++.++-...+|. .+++.++...      .+.+-+++++.+++.+|+
T Consensus       162 ~~pG~~elL~~Lk~~G~~l~IvSn~~~~~~~~~L~~~gl~~~~Fd-~iv~~~~~~~~KP~Pe~~~~a~~~lgv~p~e~v~  240 (1057)
T PLN02919        162 GFPGALELITQCKNKGLKVAVASSADRIKVDANLAAAGLPLSMFD-AIVSADAFENLKPAPDIFLAAAKILGVPTSECVV  240 (1057)
T ss_pred             cCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHcCCChhHCC-EEEECcccccCCCCHHHHHHHHHHcCcCcccEEE
Confidence            689999999999765 99999999999999999998876546787 5777776653      245556777888999999


Q ss_pred             EeCCchhhc
Q 040058          190 LDDTESVWS  198 (326)
Q Consensus       190 vDD~~~vw~  198 (326)
                      |+|++.-..
T Consensus       241 IgDs~~Di~  249 (1057)
T PLN02919        241 IEDALAGVQ  249 (1057)
T ss_pred             EcCCHHHHH
Confidence            999985554

>PRK13582 thrH phosphoserine phosphatase; Provisional

Probab=94.90  E-value=0.03  Score=49.55  Aligned_cols=81  Identities=14%  Similarity=0.171  Sum_probs=56.1

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecC-------CCCCccc--cCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED-------FNGKDRK--NPDLVRGQE  184 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~-------~~~~~~K--dL~~l~~~~  184 (326)
                      .+.+.||+.+||+.+.+.+.+.|.|++.+.+++.+++.++.. .+|.+++...++       ......|  -+..+....
T Consensus        66 ~~~~~pg~~e~L~~L~~~~~~~IvS~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~i~~~~~~~p~~k~~~l~~~~~~~  144 (205)
T PRK13582         66 TLDPLPGAVEFLDWLRERFQVVILSDTFYEFAGPLMRQLGWP-TLFCHSLEVDEDGMITGYDLRQPDGKRQAVKALKSLG  144 (205)
T ss_pred             hCCCCCCHHHHHHHHHhcCCEEEEeCCcHHHHHHHHHHcCCc-hhhcceEEECCCCeEECccccccchHHHHHHHHHHhC
Confidence            456799999999999877999999999999999999998865 467654432211       1111111  111223344


Q ss_pred             CcEEEEeCCch
Q 040058          185 RGIVILDDTES  195 (326)
Q Consensus       185 ~~vvIvDD~~~  195 (326)
                      ..++.|.|+..
T Consensus       145 ~~~v~iGDs~~  155 (205)
T PRK13582        145 YRVIAAGDSYN  155 (205)
T ss_pred             CeEEEEeCCHH
Confidence            67999999974

>PF08282 Hydrolase_3: haloacid dehalogenase-like hydrolase; InterPro: IPR013200 The Haloacid Dehydrogenase (HAD) superfamily includes phosphatases, phosphonatases, P-type ATPases, beta-phosphoglucomutases, phosphomannomutases, and dehalogenases, which are involved in a variety of cellular processes ranging from amino acid biosynthesis to detoxification []

Probab=94.68  E-value=0.058  Score=48.17  Aligned_cols=54  Identities=22%  Similarity=0.287  Sum_probs=43.1

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHHHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~~v~  149 (326)
                      +++||||||+++..                               ++-|...+.|+++. +-..++|.|.-+...+..++
T Consensus         1 i~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~g~~~~i~TGR~~~~~~~~~   49 (254)
T PF08282_consen    1 IFSDLDGTLLNSDG-------------------------------KISPETIEALKELQEKGIKLVIATGRSYSSIKRLL   49 (254)
T ss_dssp             EEEECCTTTCSTTS-------------------------------SSCHHHHHHHHHHHHTTCEEEEECSSTHHHHHHHH
T ss_pred             cEEEECCceecCCC-------------------------------eeCHHHHHHHHhhcccceEEEEEccCccccccccc
Confidence            68999999999542                               24466778888887 45999999999999999999


Q ss_pred             HHhCCC
Q 040058          150 KLLDLD  155 (326)
Q Consensus       150 ~~LDP~  155 (326)
                      +.+.-.
T Consensus        50 ~~~~~~   55 (254)
T PF08282_consen   50 KELGID   55 (254)
T ss_dssp             HHTTHC
T ss_pred             ccccch
Confidence            876544

This HAD domain is found in several distinct enzymes including: Phospholipid-transporting ATPase 1 (3.6.3.1 from EC), a putative lipid-flipping enzyme involved in cold tolerance in Arabidopsis [] 3-deoxy-D-manno-octulosonate (KDO) 8-phosphate phosphatase (3.1.3.45 from EC), which catalyses the final step in the biosynthesis of KDO - a component of lipopolysaccharide in Gram-negative bacteria [] Mannosyl-3-phosphoglycerate phosphatase (3.1.3.70 from EC), which hydrolyzes mannosyl-3-phosphoglycerate to form the osmolyte mannosylglycerate [] Phosphoglycolate phopshatase (3.1.3.18 from EC), which catalyses the dephosphorylation of 2-phosphoglycolate [] ; PDB: 2B30_B 3R4C_A 1XVI_B 3IJ5_B 3MMZ_C 3L7Y_A 1XPJ_C 1RLT_B 1RLM_B 2HF2_A ....

>TIGR01544 HAD-SF-IE haloacid dehalogenase superfamily, subfamily IE hydrolase, TIGR01544

Probab=94.67  E-value=0.051  Score=51.70  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=57.6

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhC---CCCccccceEEeecCCC--C---C----cccc--C
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLD---LDSKYFSSRIIAREDFN--G---K----DRKN--P  177 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LD---P~~~~F~~Ri~sRd~~~--~---~----~~Kd--L  177 (326)
                      .-+.+|||+.+||+.+.+. ..+.|+|+|...+++.+++.++   +...++.+++...++..  +   .    +-|.  +
T Consensus       118 ~~l~l~pG~~efl~~L~~~GIpv~IvS~G~~~~Ie~vL~~lgl~~~~~~IvSN~L~f~~dGvltG~~~P~i~~~~K~~~v  197 (277)
T TIGR01544       118 SDVMLKDGYENFFDKLQQHSIPVFIFSAGIGNVLEEVLRQAGVYHPNVKVVSNFMDFDEDGVLKGFKGPLIHTFNKNHDV  197 (277)
T ss_pred             cCCccCcCHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHHcCCCCcCceEEeeeEEECCCCeEeCCCCCcccccccHHHH
Confidence            3578999999999999766 9999999999999999999643   44456566655322211  1   1    1121  1


Q ss_pred             -----CCCC--CCCCcEEEEeCCch
Q 040058          178 -----DLVR--GQERGIVILDDTES  195 (326)
Q Consensus       178 -----~~l~--~~~~~vvIvDD~~~  195 (326)
                           +.++  .+.+.+|+|.|+..
T Consensus       198 ~~~~~~~~~~~~~~~~vI~vGDs~~  222 (277)
T TIGR01544       198 ALRNTEYFNQLKDRSNIILLGDSQG  222 (277)
T ss_pred             HHHHHHHhCccCCcceEEEECcChh
Confidence                 1223  46678999999974

This group of sequences was found during searches for members of the haloacid dehalogenase (HAD) superfamily. All of the conserved catalytic motifs are found. The placement of the variable domain between motifs 1 and 2 indicates membership in subfamily I of the superfamily, but these sequences are sufficiently different from any of the branches (IA, TIGR01493, TIGR01509, TIGR01549; IB, TIGR01488; IC, TIGR01494; ID, TIGR01658; IF TIGR01545) of that subfamily as to constitute a separate branch to now be called IE. Considering that the closest identifiable hit outside of the noise range is to a phosphoserine phosphatase, this group may be considered to be most closely allied to subfamily IB.

>PF06941 NT5C: 5' nucleotidase, deoxy (Pyrimidine), cytosolic type C protein (NT5C); InterPro: IPR010708 This family consists of several 5' nucleotidase, deoxy (Pyrimidine), and cytosolic type C (NT5C) proteins

Probab=94.58  E-value=0.011  Score=52.58  Aligned_cols=77  Identities=19%  Similarity=0.147  Sum_probs=42.8

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHH-H---HHHHHHHhCCC-Cccc-cceEEeecCCCCCccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRC-Y---AEAAVKLLDLD-SKYF-SSRIIAREDFNGKDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~-Y---A~~v~~~LDP~-~~~F-~~Ri~sRd~~~~~~~KdL~~l~~~~~~v  187 (326)
                      .+.=||+.|.|++|.+. +++++-|+.... +   +..-.+.|+-. +.++ .+.+++.       .|+  .++.|    
T Consensus        72 l~p~~gA~e~l~~L~~~g~~~~~Itar~~~~~~~~~~~k~~Wl~~hf~~i~~~~~~~~~-------~K~--~v~~D----  138 (191)
T PF06941_consen   72 LPPIPGAVEALKKLRDKGHEIVIITARPPEFPDHSAEEKREWLERHFPFIPYDNLIFTG-------DKT--LVGGD----  138 (191)
T ss_dssp             --B-TTHHHHHHHHHTSTTEEEEEEE-SSSSGCCCHHHHHHHHHHHHTHHHHCCEEEES-------SGG--GC--S----
T ss_pred             CCccHHHHHHHHHHHHcCCcEEEEEecCccccchHHHHHHHHHHHHcCCCchheEEEec-------CCC--eEecc----
Confidence            56779999999999988 577777776554 1   33334445433 1223 3334431       233  24444    


Q ss_pred             EEEeCCchhhccCCCCe
Q 040058          188 VILDDTESVWSDHTENL  204 (326)
Q Consensus       188 vIvDD~~~vw~~~~~N~  204 (326)
                      ++|||++.........+
T Consensus       139 vlIDD~~~n~~~~~~~g  155 (191)
T PF06941_consen  139 VLIDDRPHNLEQFANAG  155 (191)
T ss_dssp             EEEESSSHHHSS-SSES
T ss_pred             EEecCChHHHHhccCCC
Confidence            89999998776444444

5'(3')-deoxyribonucleotidase is a ubiquitous enzyme in mammalian cells whose physiological function is not known [].; GO: 0016791 phosphatase activity; PDB: 1Z4M_A 1Q92_A 1Q91_A 1Z4J_A 1Z4I_A 1Z4Q_A 1Z4K_A 2JAW_A 1MH9_A 1Z4L_A ....

>TIGR02463 MPGP_rel mannosyl-3-phosphoglycerate phosphatase-related protein

Probab=94.51  E-value=0.088  Score=47.32  Aligned_cols=54  Identities=28%  Similarity=0.413  Sum_probs=42.7

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~  149 (326)
                      +++||||||+++...                              ..-| ..+.|+.+.+. ..++|.|......+.+++
T Consensus         2 i~~DlDGTLL~~~~~------------------------------~~~~-~~~~l~~l~~~gi~~~i~TgR~~~~~~~~~   50 (221)
T TIGR02463         2 VFSDLDGTLLDSHSY------------------------------DWQP-AAPWLTRLQEAGIPVILCTSKTAAEVEYLQ   50 (221)
T ss_pred             EEEeCCCCCcCCCCC------------------------------CcHH-HHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence            789999999976421                              0222 67888888766 899999999999999999


Q ss_pred             HHhCCC
Q 040058          150 KLLDLD  155 (326)
Q Consensus       150 ~~LDP~  155 (326)
                      +.+...
T Consensus        51 ~~l~~~   56 (221)
T TIGR02463        51 KALGLT   56 (221)
T ss_pred             HHcCCC
Confidence            988754

This family consists of members of the HAD superfamily, subfamily IIB. All members are closely related to mannosyl-3-phosphoglycerate phosphatase, the second enzyme in a two-step pathway for biosynthesis of mannosylglycerate, a compatible solute present in some thermophiles and in Dehalococcoides ethenogenes. However, members of this family are separable in a neighbor-joining tree constructed from a multiple sequence alignment and are found only in mesophiles that lack the companion mannosyl-3-phosphoglycerate synthase (TIGR02460). Members of this family are like to act on a compound related to yet distinct from mannosyl-3-phosphoglycerate.

>COG0561 Cof Predicted hydrolases of the HAD superfamily [General function prediction only]

Probab=94.49  E-value=0.092  Score=48.58  Aligned_cols=59  Identities=24%  Similarity=0.221  Sum_probs=50.4

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA  145 (326)
                      ....+++||||||+.+..                               ...|...+.|+++. +...++|.|...-..+
T Consensus         2 ~~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~~~~~g~~v~iaTGR~~~~~   50 (264)
T COG0561           2 MIKLLAFDLDGTLLDSNK-------------------------------TISPETKEALARLREKGVKVVLATGRPLPDV   50 (264)
T ss_pred             CeeEEEEcCCCCccCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEECCCChHHH
Confidence            357899999999999862                               26778888899884 5599999999999999


Q ss_pred             HHHHHHhCCCC
Q 040058          146 EAAVKLLDLDS  156 (326)
Q Consensus       146 ~~v~~~LDP~~  156 (326)
                      .++++.|..++
T Consensus        51 ~~~~~~l~~~~   61 (264)
T COG0561          51 LSILEELGLDG   61 (264)
T ss_pred             HHHHHHcCCCc
Confidence            99999999886

>TIGR02461 osmo_MPG_phos mannosyl-3-phosphoglycerate phosphatase

Probab=94.46  E-value=0.082  Score=48.43  Aligned_cols=54  Identities=26%  Similarity=0.206  Sum_probs=42.2

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++||||||++...                                .-|...++|+++.+. ..+++.|.-++.-+..+
T Consensus         1 li~~DlDGTLl~~~~--------------------------------~~~~~~~ai~~l~~~G~~~vi~TgR~~~~~~~~   48 (225)
T TIGR02461         1 VIFTDLDGTLLPPGY--------------------------------EPGPAREALEELKDLGFPIVFVSSKTRAEQEYY   48 (225)
T ss_pred             CEEEeCCCCCcCCCC--------------------------------CchHHHHHHHHHHHCCCEEEEEeCCCHHHHHHH
Confidence            368999999999421                                224578889988876 89999998888888888


Q ss_pred             HHHhCCC
Q 040058          149 VKLLDLD  155 (326)
Q Consensus       149 ~~~LDP~  155 (326)
                      ++.+...
T Consensus        49 ~~~lg~~   55 (225)
T TIGR02461        49 REELGVE   55 (225)
T ss_pred             HHHcCCC
Confidence            8887754

Members of this family are mannosyl-3-phosphoglycerate phosphatase (EC 3.1.3.70). It acts sequentially after mannosyl-3-phosphoglycerate synthase (EC 2.4.1.217) in a two-step pathway of biosynthesis of the compatible solute mannosylglycerate, a typical osmolyte of thermophiles.

>TIGR01456 CECR5 HAD-superfamily class IIA hydrolase, TIGR01456, CECR5

Probab=94.39  E-value=0.077  Score=51.21  Aligned_cols=53  Identities=19%  Similarity=0.204  Sum_probs=39.8

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-----CceEEEEcCCc--
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-----LVDIYLCTMST--  141 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-----~yEl~IyT~g~--  141 (326)
                      +.+++|+||||+++.                                ..-||+.++|+.+..     ...+.+.|+++  
T Consensus         1 ~~~ifD~DGvL~~g~--------------------------------~~i~ga~eal~~L~~~~~~~g~~~~flTNn~g~   48 (321)
T TIGR01456         1 FGFAFDIDGVLFRGK--------------------------------KPIAGASDALRRLNRNQGQLKIPYIFLTNGGGF   48 (321)
T ss_pred             CEEEEeCcCceECCc--------------------------------cccHHHHHHHHHHhccccccCCCEEEEecCCCC
Confidence            468999999999985                                246788888888876     57788888775  


Q ss_pred             --HHHHHHHHHHhC
Q 040058          142 --RCYAEAAVKLLD  153 (326)
Q Consensus       142 --~~YA~~v~~~LD  153 (326)
                        +.+|+.+.+.++
T Consensus        49 s~~~~~~~l~~~lG   62 (321)
T TIGR01456        49 SERARAEEISSLLG   62 (321)
T ss_pred             CHHHHHHHHHHHcC
Confidence              566776655543

The Schizosaccharomyces pombe sequence (EGAD|138276) is annotated as "phosphatidyl synthase," however this is due entirely to a C-terminal region of the protein (outside the region of similarity of this model) which is highly homologous to a family of CDP-alcohol phosphatidyltransferases. (Thus, the annotation of GP|4226073 from C. elegans as similar to phosphatidyl synthase, is a mistake as this gene does not contain the C-terminal portion). The physical connection of the phosphatidyl synthase and the HAD-superfamily hydrolase domain in S. pombe may, however, be an important clue to the substrate for the hydrolases in this equivalog.

>PF09419 PGP_phosphatase: Mitochondrial PGP phosphatase; InterPro: IPR010021 This group of hypothetical proteins is a part of the IIIA subfamily of the haloacid dehalogenase (HAD) superfamily of hydrolases

Probab=94.15  E-value=0.1  Score=46.09  Aligned_cols=100  Identities=18%  Similarity=0.165  Sum_probs=64.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCce---EEEEcCC--
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVD---IYLCTMS--  140 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yE---l~IyT~g--  140 (326)
                      .+=..||+|+|+||..-...                              .+-|-+.+.++++.+.|-   +.|.+|+  
T Consensus        39 ~Gik~li~DkDNTL~~~~~~------------------------------~i~~~~~~~~~~l~~~~~~~~v~IvSNsaG   88 (168)
T PF09419_consen   39 KGIKALIFDKDNTLTPPYED------------------------------EIPPEYAEWLNELKKQFGKDRVLIVSNSAG   88 (168)
T ss_pred             cCceEEEEcCCCCCCCCCcC------------------------------cCCHHHHHHHHHHHHHCCCCeEEEEECCCC
Confidence            55578999999999754321                              366778888999987753   9999998  


Q ss_pred             -----cHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCC-----CCCCcEEEEeCCc--hhhccCC
Q 040058          141 -----TRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-----GQERGIVILDDTE--SVWSDHT  201 (326)
Q Consensus       141 -----~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~-----~~~~~vvIvDD~~--~vw~~~~  201 (326)
                           ...-|+.+.+.|.-.  +|.++--    -+....+-++.+.     ..++.+++|.|+.  |+...+.
T Consensus        89 s~~d~~~~~a~~~~~~lgIp--vl~h~~k----KP~~~~~i~~~~~~~~~~~~p~eiavIGDrl~TDVl~gN~  155 (168)
T PF09419_consen   89 SSDDPDGERAEALEKALGIP--VLRHRAK----KPGCFREILKYFKCQKVVTSPSEIAVIGDRLFTDVLMGNR  155 (168)
T ss_pred             cccCccHHHHHHHHHhhCCc--EEEeCCC----CCccHHHHHHHHhhccCCCCchhEEEEcchHHHHHHHhhc
Confidence                 467788888888743  2322110    0111111122222     3588999999996  6665443

All characterised members of this subfamily and most characterised members of the HAD superfamily are phosphatases. HAD superfamily phosphatases contain active site residues in several conserved catalytic motifs [], all of which are found conserved here. This family consists of sequences from fungi, plants, cyanobacteria, Gram-positive bacteria and Deinococcus. There is presently no characterisation of any sequence in this family.

>PRK03669 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=94.08  E-value=0.13  Score=47.97  Aligned_cols=59  Identities=22%  Similarity=0.262  Sum_probs=43.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      +.+..+++||||||+++...                               .-|-..+-|+++.+. ..++|.|.-....
T Consensus         5 ~~~~lI~~DlDGTLL~~~~~-------------------------------i~~~~~~ai~~l~~~Gi~~viaTGR~~~~   53 (271)
T PRK03669          5 QDPLLIFTDLDGTLLDSHTY-------------------------------DWQPAAPWLTRLREAQVPVILCSSKTAAE   53 (271)
T ss_pred             CCCeEEEEeCccCCcCCCCc-------------------------------CcHHHHHHHHHHHHcCCeEEEEcCCCHHH
Confidence            45678999999999986321                               223345567777655 8889999888888


Q ss_pred             HHHHHHHhCCC
Q 040058          145 AEAAVKLLDLD  155 (326)
Q Consensus       145 A~~v~~~LDP~  155 (326)
                      +..+++.|+.+
T Consensus        54 i~~~~~~l~~~   64 (271)
T PRK03669         54 MLPLQQTLGLQ   64 (271)
T ss_pred             HHHHHHHhCCC
Confidence            88888888764

>TIGR01487 SPP-like sucrose-phosphate phosphatase-like hydrolase, Archaeal

Probab=93.97  E-value=0.13  Score=46.12  Aligned_cols=57  Identities=18%  Similarity=0.174  Sum_probs=45.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+....                               .+-|...+-|+++.+. +.++|.|.-+...+.+
T Consensus         2 k~v~~DlDGTLl~~~~-------------------------------~i~~~~~~~i~~l~~~g~~~~~~TGR~~~~~~~   50 (215)
T TIGR01487         2 KLVAIDIDGTLTEPNR-------------------------------MISERAIEAIRKAEKKGIPVSLVTGNTVPFARA   50 (215)
T ss_pred             cEEEEecCCCcCCCCc-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCcchhHHH
Confidence            3688999999996421                               2556777778888766 8999999999998999


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.|+.++
T Consensus        51 ~~~~l~~~~   59 (215)
T TIGR01487        51 LAVLIGTSG   59 (215)
T ss_pred             HHHHhCCCC
Confidence            999998764

TIGR01482, in turn, is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases.

>TIGR00099 Cof-subfamily Cof subfamily of IIB subfamily of haloacid dehalogenase superfamily

Probab=93.84  E-value=0.14  Score=47.19  Aligned_cols=54  Identities=24%  Similarity=0.319  Sum_probs=43.8

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~  149 (326)
                      +++||||||++...                               .+-|...+.|+++.+. ..++|.|..+...+..++
T Consensus         2 i~~DlDGTLl~~~~-------------------------------~i~~~~~~~i~~l~~~G~~~~iaTGR~~~~~~~~~   50 (256)
T TIGR00099         2 IFIDLDGTLLNDDH-------------------------------TISPSTKEALAKLREKGIKVVLATGRPYKEVKNIL   50 (256)
T ss_pred             EEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCeEEEEeCCCHHHHHHHH
Confidence            78999999998631                               2456677788888766 999999999999998998


Q ss_pred             HHhCCC
Q 040058          150 KLLDLD  155 (326)
Q Consensus       150 ~~LDP~  155 (326)
                      +.++.+
T Consensus        51 ~~~~~~   56 (256)
T TIGR00099        51 KELGLD   56 (256)
T ss_pred             HHcCCC
Confidence            888765

The members of this subfamily are restricted almost exclusively to bacteria (one sequences from S. pombe scores above trusted, while another is between trusted and noise). It is notable that no archaea are found in this group, the closest relations to the archaea found here being two Deinococcus sequences.

>smart00775 LNS2 LNS2 domain

Probab=93.73  E-value=0.16  Score=44.00  Aligned_cols=62  Identities=11%  Similarity=0.110  Sum_probs=41.3

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH--
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE--  146 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~--  146 (326)
                      .+++|+||||+.+.....+-                  ..-+.-  ...|++.++++.+.+. |.+++.|.-...-+.  
T Consensus         1 iVisDIDGTL~~sd~~~~~~------------------~~~~~~--~~~~~~~~a~~~l~~~G~~ivy~TGRp~~~~~~t   60 (157)
T smart00775        1 IVISDIDGTITKSDVLGHVV------------------PIIGKD--WTHPGVAKLYRDIQNNGYKILYLTARPIGQADRT   60 (157)
T ss_pred             CEEEecCCCCcccccccccc------------------cccccC--cCCHHHHHHHHHHHHcCCeEEEEcCCcHHHHHHH
Confidence            37899999999886322110                  000011  3579999999999876 888888887766664  


Q ss_pred             -HHHHH
Q 040058          147 -AAVKL  151 (326)
Q Consensus       147 -~v~~~  151 (326)
                       +.++.
T Consensus        61 ~~~l~~   66 (157)
T smart00775       61 RSYLSQ   66 (157)
T ss_pred             HHHHHH
Confidence             44444

This domain is found in Saccharomyces cerevisiae protein SMP2, proteins with an N-terminal lipin domain and phosphatidylinositol transfer proteins. SMP2 is involved in plasmid maintenance and respiration. Lipin proteins are involved in adipose tissue development and insulin resistance.

>PTZ00445 p36-lilke protein; Provisional

Probab=93.72  E-value=0.034  Score=50.86  Aligned_cols=128  Identities=11%  Similarity=0.082  Sum_probs=73.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+=..+++|||.|||-.-..   +.++    ...+.         ..+....+|.+.++++.+.+. +.+.|-|.+.+.-
T Consensus        41 ~GIk~Va~D~DnTlI~~Hsg---G~~~----~~~~~---------~~~~~~~tpefk~~~~~l~~~~I~v~VVTfSd~~~  104 (219)
T PTZ00445         41 CGIKVIASDFDLTMITKHSG---GYID----PDNDD---------IRVLTSVTPDFKILGKRLKNSNIKISVVTFSDKEL  104 (219)
T ss_pred             cCCeEEEecchhhhhhhhcc---cccC----CCcch---------hhhhccCCHHHHHHHHHHHHCCCeEEEEEccchhh
Confidence            66688999999999873321   1110    00000         023346999999999999865 9999999999865


Q ss_pred             -----------HHHHHH-HhCCCCcccc-ceEE---e---ecCC-------CC--C----c--cccCCCCCCCCCcEEEE
Q 040058          145 -----------AEAAVK-LLDLDSKYFS-SRII---A---REDF-------NG--K----D--RKNPDLVRGQERGIVIL  190 (326)
Q Consensus       145 -----------A~~v~~-~LDP~~~~F~-~Ri~---s---Rd~~-------~~--~----~--~KdL~~l~~~~~~vvIv  190 (326)
                                 ..++++ .|+-.+.=|. .+++   .   .+..       ..  .    |  .+=+++.+.+++.+++|
T Consensus       105 ~~~~~~~~~Isg~~li~~~lk~s~~~~~i~~~~~yyp~~w~~p~~y~~~gl~KPdp~iK~yHle~ll~~~gl~peE~LFI  184 (219)
T PTZ00445        105 IPSENRPRYISGDRMVEAALKKSKCDFKIKKVYAYYPKFWQEPSDYRPLGLDAPMPLDKSYHLKQVCSDFNVNPDEILFI  184 (219)
T ss_pred             ccccCCcceechHHHHHHHHHhcCccceeeeeeeeCCcccCChhhhhhhcccCCCccchHHHHHHHHHHcCCCHHHeEee
Confidence                       222332 2332221111 1111   0   1110       00  0    1  22234557789999999


Q ss_pred             eCCchhhccCCCCeEEeCc
Q 040058          191 DDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       191 DD~~~vw~~~~~N~I~I~~  209 (326)
                      ||++........-|+..--
T Consensus       185 DD~~~NVeaA~~lGi~ai~  203 (219)
T PTZ00445        185 DDDMNNCKNALKEGYIALH  203 (219)
T ss_pred             cCCHHHHHHHHHCCCEEEE
Confidence            9999877654445554433

>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like

Probab=93.67  E-value=0.13  Score=44.09  Aligned_cols=50  Identities=22%  Similarity=0.354  Sum_probs=42.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA  165 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s  165 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.|++++++.++-. .+|++++..
T Consensus        72 ~~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~-~~~~~~~~~  122 (177)
T TIGR01488        72 VALRPGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID-DVFANRLEF  122 (177)
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc-hheeeeEEE
Confidence            56899999999999765 999999999999999999998766 567765543

Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.

>PRK10513 sugar phosphate phosphatase; Provisional

Probab=93.58  E-value=0.18  Score=46.71  Aligned_cols=57  Identities=21%  Similarity=0.263  Sum_probs=43.8

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++..                               .+-|...+-|+++.+. ..++|.|.-....+.
T Consensus         3 ~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~   51 (270)
T PRK10513          3 IKLIAIDMDGTLLLPDH-------------------------------TISPAVKQAIAAARAKGVNVVLTTGRPYAGVH   51 (270)
T ss_pred             eEEEEEecCCcCcCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEecCCChHHHH
Confidence            35788999999998641                               1344556778888766 899999988888888


Q ss_pred             HHHHHhCCC
Q 040058          147 AAVKLLDLD  155 (326)
Q Consensus       147 ~v~~~LDP~  155 (326)
                      ++++.++.+
T Consensus        52 ~~~~~l~~~   60 (270)
T PRK10513         52 RYLKELHME   60 (270)
T ss_pred             HHHHHhCCC
Confidence            888888764

>COG0241 HisB Histidinol phosphatase and related phosphatases [Amino acid transport and metabolism]

Probab=93.52  E-value=0.12  Score=46.27  Aligned_cols=126  Identities=10%  Similarity=-0.014  Sum_probs=78.1

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC----cH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS----TR  142 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g----~~  142 (326)
                      ...|+||.||||+--... .+..        .+             -..+.||+.+=|..+.+. |.++|+|+.    +.
T Consensus         5 ~k~lflDRDGtin~d~~~-yv~~--------~~-------------~~~~~~g~i~al~~l~~~gy~lVvvTNQsGi~rg   62 (181)
T COG0241           5 QKALFLDRDGTINIDKGD-YVDS--------LD-------------DFQFIPGVIPALLKLQRAGYKLVVVTNQSGIGRG   62 (181)
T ss_pred             CcEEEEcCCCceecCCCc-ccCc--------HH-------------HhccCccHHHHHHHHHhCCCeEEEEECCCCcccc
Confidence            578999999999865431 1111        11             126899999999999766 999999992    22


Q ss_pred             --------HHHHHHHHHhCCCCccccceEEeecC----CCC------CccccCCCCCCCCCcEEEEeCCchhhccCCCCe
Q 040058          143 --------CYAEAAVKLLDLDSKYFSSRIIARED----FNG------KDRKNPDLVRGQERGIVILDDTESVWSDHTENL  204 (326)
Q Consensus       143 --------~YA~~v~~~LDP~~~~F~~Ri~sRd~----~~~------~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~  204 (326)
                              .+-+.|.+.|--.|.-|.+.++....    |..      ++..-++..+.|++..++|-|+..=-......+
T Consensus        63 yf~~~~f~~~~~~m~~~l~~~gv~id~i~~Cph~p~~~c~cRKP~~gm~~~~~~~~~iD~~~s~~VGD~~~Dlq~a~n~g  142 (181)
T COG0241          63 YFTEADFDKLHNKMLKILASQGVKIDGILYCPHHPEDNCDCRKPKPGMLLSALKEYNIDLSRSYVVGDRLTDLQAAENAG  142 (181)
T ss_pred             CccHHHHHHHHHHHHHHHHHcCCccceEEECCCCCCCCCcccCCChHHHHHHHHHhCCCccceEEecCcHHHHHHHHHCC
Confidence                    23333666666666667765554332    221      122234445688999999999963332222334


Q ss_pred             EEeCccccccccc
Q 040058          205 IVLGKYVYFRDKE  217 (326)
Q Consensus       205 I~I~~y~~f~~~~  217 (326)
                      +.  ++.|..+.+
T Consensus       143 i~--~~~~~~~~~  153 (181)
T COG0241         143 IK--GVLVLTGIG  153 (181)
T ss_pred             CC--ceEEEcCcc
Confidence            44  777666654

>PRK10444 UMP phosphatase; Provisional

Probab=93.41  E-value=0.13  Score=47.91  Aligned_cols=51  Identities=16%  Similarity=0.187  Sum_probs=35.8

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++||||||+++.                                ..-||..++|+.+.+. ..+++.|+.+..-+..+
T Consensus         3 ~v~~DlDGtL~~~~--------------------------------~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~   50 (248)
T PRK10444          3 NVICDIDGVLMHDN--------------------------------VAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDL   50 (248)
T ss_pred             EEEEeCCCceEeCC--------------------------------eeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHH
Confidence            57899999999885                                1346777777777654 77777777766555555


Q ss_pred             HHHh
Q 040058          149 VKLL  152 (326)
Q Consensus       149 ~~~L  152 (326)
                      ++.|
T Consensus        51 ~~~l   54 (248)
T PRK10444         51 ANRF   54 (248)
T ss_pred             HHHH
Confidence            5544

>PRK10530 pyridoxal phosphate (PLP) phosphatase; Provisional

Probab=93.18  E-value=0.27  Score=45.39  Aligned_cols=57  Identities=23%  Similarity=0.241  Sum_probs=41.6

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|...+-|+++.+. ..++|.|.-....+..
T Consensus         4 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~~~~~G~~~~iaTGR~~~~~~~   52 (272)
T PRK10530          4 RVIALDLDGTLLTPKK-------------------------------TILPESLEALARAREAGYKVIIVTGRHHVAIHP   52 (272)
T ss_pred             cEEEEeCCCceECCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence            5788999999997642                               1344455667777655 7888888877777888


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.|+.++
T Consensus        53 ~~~~l~~~~   61 (272)
T PRK10530         53 FYQALALDT   61 (272)
T ss_pred             HHHhcCCCC
Confidence            888887653

>PRK01158 phosphoglycolate phosphatase; Provisional

Probab=93.14  E-value=0.24  Score=44.54  Aligned_cols=57  Identities=23%  Similarity=0.366  Sum_probs=43.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+.+..                               .+.|...+-|+++.+. ..++|.|.-+...+.+
T Consensus         4 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~   52 (230)
T PRK01158          4 KAIAIDIDGTITDKDR-------------------------------RLSLKAVEAIRKAEKLGIPVILATGNVLCFARA   52 (230)
T ss_pred             eEEEEecCCCcCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHH
Confidence            5788999999996531                               2455666777777755 7888888888888888


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.+..++
T Consensus        53 ~~~~l~~~~   61 (230)
T PRK01158         53 AAKLIGTSG   61 (230)
T ss_pred             HHHHhCCCC
Confidence            888887653

>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB

Probab=92.95  E-value=0.21  Score=44.24  Aligned_cols=54  Identities=28%  Similarity=0.277  Sum_probs=43.6

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++|+||||+.+.. .                             ...|.+.+.|+++.+. ..++|-|..+..++..+
T Consensus         1 li~~D~DgTL~~~~~-~-----------------------------~~~~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~   50 (204)
T TIGR01484         1 LLFFDLDGTLLDPNA-H-----------------------------ELSPETIEALERLREAGVKVVLVTGRSLAEIKEL   50 (204)
T ss_pred             CEEEeCcCCCcCCCC-C-----------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
Confidence            378999999997421 0                             3567888999999877 89999999999999999


Q ss_pred             HHHhC
Q 040058          149 VKLLD  153 (326)
Q Consensus       149 ~~~LD  153 (326)
                      ++.++
T Consensus        51 ~~~~~   55 (204)
T TIGR01484        51 LKQLP   55 (204)
T ss_pred             HHhCC
Confidence            88743

The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.

>TIGR01486 HAD-SF-IIB-MPGP mannosyl-3-phosphoglycerate phosphatase family

Probab=92.95  E-value=0.21  Score=46.10  Aligned_cols=54  Identities=28%  Similarity=0.296  Sum_probs=42.4

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~  149 (326)
                      +++||||||+++...                               .-|...+.++.+.+. ..+++.|.-+...+..++
T Consensus         2 i~~DlDGTll~~~~~-------------------------------~~~~~~~~i~~l~~~g~~~~~~TgR~~~~~~~~~   50 (256)
T TIGR01486         2 IFTDLDGTLLDPHGY-------------------------------DWGPAKEVLERLQELGIPVIPCTSKTAAEVEYLR   50 (256)
T ss_pred             EEEcCCCCCcCCCCc-------------------------------CchHHHHHHHHHHHCCCeEEEEcCCCHHHHHHHH
Confidence            789999999987521                               123467888888876 899999988888889999


Q ss_pred             HHhCCC
Q 040058          150 KLLDLD  155 (326)
Q Consensus       150 ~~LDP~  155 (326)
                      +.++..
T Consensus        51 ~~~~~~   56 (256)
T TIGR01486        51 KELGLE   56 (256)
T ss_pred             HHcCCC
Confidence            888743

This small group of proteins is a member of the IIB subfamily (TIGR01484) of the Haloacid Dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. Several members of this family from thermophiles (and from Dehalococcoides ethenogenes) are now known to act as mannosyl-3-phosphoglycerate (MPG) phosphatase. In these cases, the enzyme acts after MPG synthase to make the compatible solute mannosylglycerate. We propose that other mesophilic members of this family do not act as mannosyl-3-phosphoglycerate phosphatase. A member of this family is found in Escherichia coli, which appears to lack MPG synthase. Mannosylglycerate is imported in E. coli by phosphoenolpyruvate-dependent transporter (PubMed:14645248), but it appears the phosphorylation is not on the glycerate moiety, that the phosphorylated import is degraded by an alpha-mannosidase from an adjacent gene, and that E. coli would have no pathway to obta

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=92.87  E-value=0.19  Score=45.41  Aligned_cols=52  Identities=6%  Similarity=0.111  Sum_probs=45.3

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE  167 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd  167 (326)
                      +.++||+.+||+.+.+.+.++|-|+|...+++++++.++-+ .+|.+++...+
T Consensus        67 i~l~pga~ell~~lk~~~~~~IVS~~~~~~~~~il~~lgi~-~~~an~l~~~~  118 (203)
T TIGR02137        67 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDD  118 (203)
T ss_pred             CCCCccHHHHHHHHHhCCeEEEEeCChHHHHHHHHHHcCCc-hhhceeeEEec
Confidence            47899999999999888899999999999999999999877 57877666433

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458

Probab=92.64  E-value=0.15  Score=47.54  Aligned_cols=46  Identities=13%  Similarity=0.143  Sum_probs=34.9

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      .+++||||||++......                            ..=||..++|+.+.+. ..+.+.|+.+..
T Consensus         3 ~i~~D~DGtl~~~~~~~~----------------------------~~~~~a~~al~~l~~~G~~~~~~Tn~~~~   49 (257)
T TIGR01458         3 GVLLDISGVLYISDAKSG----------------------------VAVPGSQEAVKRLRGASVKVRFVTNTTKE   49 (257)
T ss_pred             EEEEeCCCeEEeCCCccc----------------------------CcCCCHHHHHHHHHHCCCeEEEEECCCCC
Confidence            689999999998752100                            1568999999999866 889999975544

This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.

>COG3882 FkbH Predicted enzyme involved in methoxymalonyl-ACP biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]

Probab=92.47  E-value=0.25  Score=50.23  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=71.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      ..|.+||||||+||+-...-..      .    ++.+  .+-. ..+    ..---+++|...+.+. +=+.|.+-.+..
T Consensus       220 ~~kK~LVLDLDNTLWGGVIGed------G----v~GI--~Ls~~~~G----~~fk~fQ~~Ik~l~kqGVlLav~SKN~~~  283 (574)
T COG3882         220 KSKKALVLDLDNTLWGGVIGED------G----VDGI--RLSNSAEG----EAFKTFQNFIKGLKKQGVLLAVCSKNTEK  283 (574)
T ss_pred             cccceEEEecCCcccccccccc------c----ccce--eecCCCCc----hhHHHHHHHHHHHHhccEEEEEecCCchh
Confidence            8899999999999998764321      1    1100  0000 000    0001256777777765 789999999998


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCCC----------CccccCCCCCCCCCcEEEEeCCchhhccCCCCe-EEeCccc
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFNG----------KDRKNPDLVRGQERGIVILDDTESVWSDHTENL-IVLGKYV  211 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~-I~I~~y~  211 (326)
                      =|..+... -|+      -|+..++...          ...|-.++|+-+.+..|++||.|.--..-+.++ +.|.+|.
T Consensus       284 da~evF~k-hp~------MiLkeedfa~~~iNW~~K~eNirkIAkklNlg~dSmvFiDD~p~ErE~vk~~~~v~Vi~~~  355 (574)
T COG3882         284 DAKEVFRK-HPD------MILKEEDFAVFQINWDPKAENIRKIAKKLNLGLDSMVFIDDNPAERELVKRELPVSVIEFP  355 (574)
T ss_pred             hHHHHHhh-CCC------eEeeHhhhhhheecCCcchhhHHHHHHHhCCCccceEEecCCHHHHHHHHhcCceeeccCC
Confidence            88887753 222      3553333211          233444567888899999999996443222222 5555443

>PRK15126 thiamin pyrimidine pyrophosphate hydrolase; Provisional

Probab=92.37  E-value=0.33  Score=45.13  Aligned_cols=57  Identities=18%  Similarity=0.139  Sum_probs=42.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+.+..                               .+-|...+-|+++.+. ..++|.|.-....+.+
T Consensus         3 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~   51 (272)
T PRK15126          3 RLAAFDMDGTLLMPDH-------------------------------HLGEKTLSTLARLRERDITLTFATGRHVLEMQH   51 (272)
T ss_pred             cEEEEeCCCcCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHH
Confidence            4789999999997532                               2444556667777655 7888888888888888


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.++.++
T Consensus        52 ~~~~l~~~~   60 (272)
T PRK15126         52 ILGALSLDA   60 (272)
T ss_pred             HHHHcCCCC
Confidence            888887654

>PLN02645 phosphoglycolate phosphatase

Probab=92.35  E-value=0.2  Score=48.12  Aligned_cols=53  Identities=13%  Similarity=0.083  Sum_probs=39.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..+++|+||||++...                                .=||+.++|+.+.+. ..+++-|+.+..-
T Consensus        26 ~~~~~~~~D~DGtl~~~~~--------------------------------~~~ga~e~l~~lr~~g~~~~~~TN~~~~~   73 (311)
T PLN02645         26 DSVETFIFDCDGVIWKGDK--------------------------------LIEGVPETLDMLRSMGKKLVFVTNNSTKS   73 (311)
T ss_pred             HhCCEEEEeCcCCeEeCCc--------------------------------cCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            4455889999999998641                                228999999999754 9999999988444


Q ss_pred             HHHHHH
Q 040058          145 AEAAVK  150 (326)
Q Consensus       145 A~~v~~  150 (326)
                      ...+++
T Consensus        74 ~~~~~~   79 (311)
T PLN02645         74 RAQYGK   79 (311)
T ss_pred             HHHHHH
Confidence            444443

>COG0546 Gph Predicted phosphatases [General function prediction only]

Probab=92.32  E-value=0.25  Score=44.77  Aligned_cols=81  Identities=17%  Similarity=0.162  Sum_probs=61.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      ..+-||+.+.|+.+++. |.+.|.|+..+..++.+++.++-. .+|.. +++-++...      ....-+..++.+++.+
T Consensus        88 ~~~~~gv~e~L~~L~~~g~~l~i~T~k~~~~~~~~l~~~gl~-~~F~~-i~g~~~~~~~KP~P~~l~~~~~~~~~~~~~~  165 (220)
T COG0546          88 SRLFPGVKELLAALKSAGYKLGIVTNKPERELDILLKALGLA-DYFDV-IVGGDDVPPPKPDPEPLLLLLEKLGLDPEEA  165 (220)
T ss_pred             CccCCCHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHHHhCCc-cccce-EEcCCCCCCCCcCHHHHHHHHHHhCCChhhe
Confidence            57899999999999877 899999999999999999999988 68874 555232222      1223344556666689


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      ++|-|+..=-
T Consensus       166 l~VGDs~~Di  175 (220)
T COG0546         166 LMVGDSLNDI  175 (220)
T ss_pred             EEECCCHHHH
Confidence            9999997544

>PRK10976 putative hydrolase; Provisional

Probab=92.27  E-value=0.34  Score=44.80  Aligned_cols=57  Identities=19%  Similarity=0.250  Sum_probs=39.4

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|...+-|+++.+. ..++|.|.-....+..
T Consensus         3 kli~~DlDGTLl~~~~-------------------------------~is~~~~~ai~~l~~~G~~~~iaTGR~~~~~~~   51 (266)
T PRK10976          3 QVVASDLDGTLLSPDH-------------------------------TLSPYAKETLKLLTARGIHFVFATGRHHVDVGQ   51 (266)
T ss_pred             eEEEEeCCCCCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChHHHHH
Confidence            4789999999997642                               1334445556666554 7788888777777777


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.++.++
T Consensus        52 ~~~~l~~~~   60 (266)
T PRK10976         52 IRDNLEIKS   60 (266)
T ss_pred             HHHhcCCCC
Confidence            777776553

>TIGR01452 PGP_euk phosphoglycolate/pyridoxal phosphate phosphatase family

Probab=92.20  E-value=0.21  Score=47.02  Aligned_cols=41  Identities=12%  Similarity=0.188  Sum_probs=31.6

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST  141 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~  141 (326)
                      ..+++|+||||++..                                ..-||+.++|+++.+. ..+++.|+++
T Consensus         3 ~~~~~D~DGtl~~~~--------------------------------~~~~ga~e~l~~L~~~g~~~~~~Tnns   44 (279)
T TIGR01452         3 QGFIFDCDGVLWLGE--------------------------------RVVPGAPELLDRLARAGKAALFVTNNS   44 (279)
T ss_pred             cEEEEeCCCceEcCC--------------------------------eeCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence            368899999998853                                2457888889888765 7888888754

This model is closely related to a family of bacterial sequences including the E. coli NagD and B. subtilus AraL genes which are characterized by the ability to hydrolyze para-nitrophenylphosphate (pNPPases or NPPases). The chlamydomonas PGPase does not catalyze this reaction and so presumably these two groups have different functions and substrate specificities. Many of the genes in this alignment have been annotated as pNPPases due to this association.

>TIGR01482 SPP-subfamily Sucrose-phosphate phosphatase subfamily

Probab=91.94  E-value=0.31  Score=43.56  Aligned_cols=52  Identities=21%  Similarity=0.278  Sum_probs=35.4

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~  149 (326)
                      +++||||||+++..                               .+.|-..+-|+++.+. ..+++.|.-....+.+++
T Consensus         1 i~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~Gi~~~~aTGR~~~~~~~~~   49 (225)
T TIGR01482         1 IASDIDGTLTDPNR-------------------------------AINESALEAIRKAESVGIPVVLVTGNSVQFARALA   49 (225)
T ss_pred             CeEeccCccCCCCc-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCchHHHHHHH
Confidence            57999999998642                               1334445556666554 677777777777677777


Q ss_pred             HHhC
Q 040058          150 KLLD  153 (326)
Q Consensus       150 ~~LD  153 (326)
                      +.++
T Consensus        50 ~~l~   53 (225)
T TIGR01482        50 KLIG   53 (225)
T ss_pred             HHhC
Confidence            7776

catalyze the same reaction as SPP.

>PRK10748 flavin mononucleotide phosphatase; Provisional

Probab=91.80  E-value=0.15  Score=46.73  Aligned_cols=85  Identities=12%  Similarity=0.062  Sum_probs=59.2

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +..-||+.++|+.+.+.|.+.|.|+|+..     ++..+-. .+|. .+++.++...      .+.+-+++++.+++.++
T Consensus       112 ~~~~~gv~~~L~~L~~~~~l~i~Tn~~~~-----~~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~~~~~~~~~~  184 (238)
T PRK10748        112 IDVPQATHDTLKQLAKKWPLVAITNGNAQ-----PELFGLG-DYFE-FVLRAGPHGRSKPFSDMYHLAAEKLNVPIGEIL  184 (238)
T ss_pred             CCCCccHHHHHHHHHcCCCEEEEECCCch-----HHHCCcH-Hhhc-eeEecccCCcCCCcHHHHHHHHHHcCCChhHEE
Confidence            56779999999999988999999999875     2444443 5786 4665555432      13444566778889999


Q ss_pred             EEeCCc--hhhccCCCCeEEe
Q 040058          189 ILDDTE--SVWSDHTENLIVL  207 (326)
Q Consensus       189 IvDD~~--~vw~~~~~N~I~I  207 (326)
                      +|.|++  ++-.. ..+|+..
T Consensus       185 ~VGD~~~~Di~~A-~~aG~~~  204 (238)
T PRK10748        185 HVGDDLTTDVAGA-IRCGMQA  204 (238)
T ss_pred             EEcCCcHHHHHHH-HHCCCeE
Confidence            998884  55543 3455543

>PRK10187 trehalose-6-phosphate phosphatase; Provisional

Probab=91.75  E-value=0.3  Score=45.89  Aligned_cols=61  Identities=15%  Similarity=0.047  Sum_probs=44.4

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc--CceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS--LVDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~--~yEl~IyT~g~~~  143 (326)
                      ..++.+++|+||||++....|.-                          ..+-|.+.+-|+.+++  ...++|.|--...
T Consensus        12 ~~~~li~~D~DGTLl~~~~~p~~--------------------------~~i~~~~~~~L~~L~~~~g~~v~i~SGR~~~   65 (266)
T PRK10187         12 SANYAWFFDLDGTLAEIKPHPDQ--------------------------VVVPDNILQGLQLLATANDGALALISGRSMV   65 (266)
T ss_pred             CCCEEEEEecCCCCCCCCCCccc--------------------------ccCCHHHHHHHHHHHhCCCCcEEEEeCCCHH
Confidence            45789999999999987654420                          1355888888999986  3678888877777


Q ss_pred             HHHHHHHHh
Q 040058          144 YAEAAVKLL  152 (326)
Q Consensus       144 YA~~v~~~L  152 (326)
                      -+..+++.+
T Consensus        66 ~~~~~~~~~   74 (266)
T PRK10187         66 ELDALAKPY   74 (266)
T ss_pred             HHHHhcCcc
Confidence            666666544

>TIGR01675 plant-AP plant acid phosphatase

Probab=91.55  E-value=0.34  Score=44.87  Aligned_cols=125  Identities=14%  Similarity=0.023  Sum_probs=67.9

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      .+|..+|||+|+|++.......    ...+..  ..+...-|.. -..---..-|++.+|++.+.+. ++|++-|.=+..
T Consensus        75 dg~~A~V~DIDET~LsN~py~~----~~~~g~--~~~~~~~~~~wv~~~~apaip~al~l~~~l~~~G~~Vf~lTGR~e~  148 (229)
T TIGR01675        75 DGMDAWIFDVDDTLLSNIPYYK----KHGYGT--EKTDPTAFWLWLGKGAAPALPEGLKLYQKIIELGIKIFLLSGRWEE  148 (229)
T ss_pred             CCCcEEEEccccccccCHHHHH----HhccCC--CcCCHHHHHHHHHcCCCCCCHHHHHHHHHHHHCCCEEEEEcCCChH
Confidence            6999999999999998763210    000000  0000000000 0000115779999999999765 999999998887


Q ss_pred             HHHHHHHHhCCCCcc-ccceEEeecC--CCCC--ccccCCC---CCCCCCcEEEEeCCchhh
Q 040058          144 YAEAAVKLLDLDSKY-FSSRIIARED--FNGK--DRKNPDL---VRGQERGIVILDDTESVW  197 (326)
Q Consensus       144 YA~~v~~~LDP~~~~-F~~Ri~sRd~--~~~~--~~KdL~~---l~~~~~~vvIvDD~~~vw  197 (326)
                      ......+.|--.|-- + .+++=|..  ....  ..|+-.+   ...+-+-+..|+|...-+
T Consensus       149 ~r~~T~~nL~~~G~~~~-~~LiLR~~~d~~~~~~~yKs~~R~~l~~~GYrIv~~iGDq~sDl  209 (229)
T TIGR01675       149 LRNATLDNLINAGFTGW-KHLILRGLEDSNKTVVTYKSEVRKSLMEEGYRIWGNIGDQWSDL  209 (229)
T ss_pred             HHHHHHHHHHHcCCCCc-CeeeecCCCCCCchHhHHHHHHHHHHHhCCceEEEEECCChHHh
Confidence            766665555444311 2 35655652  2110  0132211   123455677888886544

This model explicitly excludes the VSPs which lack the nucleophilc aspartate. The possibility exists, however, that some members of this family may, while containing all of the conserved HAD-superfamily catalytic residues, lack activity and have a function related to the function of the VSPs rather than the acid phosphatases.

>PF06888 Put_Phosphatase: Putative Phosphatase; InterPro: IPR016965 This group represents phosphatases related to PHOSPHO1 and PHOSPHO2 []

Probab=91.38  E-value=0.54  Score=43.73  Aligned_cols=50  Identities=16%  Similarity=0.285  Sum_probs=43.1

Q ss_pred             EEEeCccHHHHHHHhhc---CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEe
Q 040058          114 LVKLRPFVRTFLEQASS---LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIA  165 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~---~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~s  165 (326)
                      -+.+-||..+|++.+++   .++++|-|.|..-|-+.|++.-+-. .+|+ .|+|
T Consensus        69 ~ip~~pgm~~~l~~l~~~~~~~~~~IiSDaNs~fI~~iL~~~gl~-~~f~-~I~T  121 (234)
T PF06888_consen   69 SIPIDPGMKELLRFLAKNQRGFDLIIISDANSFFIETILEHHGLR-DCFS-EIFT  121 (234)
T ss_pred             cCCCCccHHHHHHHHHhcCCCceEEEEeCCcHhHHHHHHHhCCCc-cccc-eEEe
Confidence            46889999999999943   5999999999999999999998876 5676 4775

It includes plant phosphatases with homology to the haloacid dehalogenase (HAD) superfamily [, ]. PHOSPHO1 is a phosphoethanolamine/phosphocholine phosphatase [], while PHOSPHO2 has high activity toward pyridoxal 5'-phosphate (PLP), and it is active at much lower level toward pyrophosphate, phosphoethanolamine (PEA)and phosphocholine (PCho) []. ; GO: 0016791 phosphatase activity

>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase

Probab=91.34  E-value=0.37  Score=44.39  Aligned_cols=59  Identities=20%  Similarity=0.123  Sum_probs=37.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCc-eEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLV-DIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~y-El~IyT~g~~~YA~  146 (326)
                      ++.++.||||||+++.....                            ...|.+.+-++++.+.- .+++-|.-+..=+.
T Consensus         1 ~~li~tDlDGTLl~~~~~~~----------------------------~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~   52 (249)
T TIGR01485         1 RLLLVSDLDNTLVDHTDGDN----------------------------QALLRLNALLEDHRGEDSLLVYSTGRSPHSYK   52 (249)
T ss_pred             CeEEEEcCCCcCcCCCCCCh----------------------------HHHHHHHHHHHHhhccCceEEEEcCCCHHHHH
Confidence            46889999999998642110                            35577788888877665 44455444444455


Q ss_pred             HHHHHhCC
Q 040058          147 AAVKLLDL  154 (326)
Q Consensus       147 ~v~~~LDP  154 (326)
                      ++++.+.+
T Consensus        53 ~~~~~~~~   60 (249)
T TIGR01485        53 ELQKQKPL   60 (249)
T ss_pred             HHHhcCCC
Confidence            56554443

Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.

>COG2503 Predicted secreted acid phosphatase [General function prediction only]

Probab=91.32  E-value=0.21  Score=46.68  Aligned_cols=72  Identities=22%  Similarity=0.243  Sum_probs=40.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~  143 (326)
                      .++..+|||||||+++.+...      .+.......+.+.-|. .-..---+.=||+.|||+.+.+. -.|+--|+-+++
T Consensus        77 ~K~~aVvlDlDETvLdNs~Yq------gy~v~nnk~f~pe~Wd~wV~a~~sk~vpGA~eFl~Yvn~~Gg~ifyiSNR~~~  150 (274)
T COG2503          77 GKKKAVVLDLDETVLDNSAYQ------GYQVLNNKGFTPETWDKWVQAKKSKAVPGAVEFLNYVNSNGGKIFYISNRDQE  150 (274)
T ss_pred             CCCceEEEecchHhhcCcccc------chhhhcCCCCCccchHHHHhhcccccCccHHHHHHHHHhcCcEEEEEeccchh
Confidence            667799999999999987432      1111111111111110 00011236779999999999766 444444444443

>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457

Probab=91.25  E-value=0.35  Score=44.88  Aligned_cols=40  Identities=18%  Similarity=0.309  Sum_probs=29.1

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST  141 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~  141 (326)
                      .+++|+||||++...                                .=|+..++|+++.+. ..+++.|+++
T Consensus         3 ~~~~D~DGtl~~~~~--------------------------------~i~~a~~~l~~l~~~g~~~~~~Tnn~   43 (249)
T TIGR01457         3 GYLIDLDGTMYKGKE--------------------------------RIPEAETFVHELQKRDIPYLFVTNNS   43 (249)
T ss_pred             EEEEeCCCceEcCCe--------------------------------eCcCHHHHHHHHHHCCCeEEEEeCCC
Confidence            688999999998641                                235777888877655 7777777633

This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.

>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]

Probab=90.79  E-value=0.34  Score=45.93  Aligned_cols=57  Identities=16%  Similarity=0.131  Sum_probs=42.5

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHH--
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRC--  143 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~--  143 (326)
                      +.-...+||||||++..                                ..=||+.+||+.+.+. -.+++-||++..  
T Consensus         7 ~y~~~l~DlDGvl~~G~--------------------------------~~ipga~e~l~~L~~~g~~~iflTNn~~~s~   54 (269)
T COG0647           7 KYDGFLFDLDGVLYRGN--------------------------------EAIPGAAEALKRLKAAGKPVIFLTNNSTRSR   54 (269)
T ss_pred             hcCEEEEcCcCceEeCC--------------------------------ccCchHHHHHHHHHHcCCeEEEEeCCCCCCH
Confidence            34568899999999775                                2569999999999877 888888998765  


Q ss_pred             --HHHHHHHHhCCC
Q 040058          144 --YAEAAVKLLDLD  155 (326)
Q Consensus       144 --YA~~v~~~LDP~  155 (326)
                        |+.++..+..++
T Consensus        55 ~~~~~~L~~~~~~~   68 (269)
T COG0647          55 EVVAARLSSLGGVD   68 (269)
T ss_pred             HHHHHHHHhhcCCC
Confidence              444555534443

>PF11019 DUF2608: Protein of unknown function (DUF2608); InterPro: IPR022565 This family is conserved in Bacteria

Probab=90.51  E-value=0.71  Score=43.28  Aligned_cols=146  Identities=17%  Similarity=0.181  Sum_probs=84.7

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchh-hhc---cccccc---cceee--c----cceEEEEeCccHHHHHHHhhcC-c
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKY-LKK---QIHSFI---GSLFQ--M----ANDKLVKLRPFVRTFLEQASSL-V  132 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~-l~~---~~~~~~---~~l~~--~----~~~~~vklRPgl~eFL~~ls~~-y  132 (326)
                      ....+|+|+|.||+-+...-.-+.|... +..   ...+..   ..++.  .    ...-....-|.+.++++.++.. .
T Consensus        19 ~~tLvvfDiDdTLi~~~~~lg~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~lie~~~~~~i~~lq~~~~   98 (252)
T PF11019_consen   19 QDTLVVFDIDDTLITPKQPLGSPAWYQWQLGKLQKRGKSEYKAVECIFEEWLSLIFELRKMELIESDVPNIINSLQNKGI   98 (252)
T ss_pred             CCeEEEEEcchhhhcCccccCCchhHHHHHHHHHhhccchhhhhhHHHHHHHHHHHhhcceEEcchhHHHHHHHHHHCCC
Confidence            6788999999999987722111222211 100   000000   11110  0    0134456789999999999866 9


Q ss_pred             eEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCC-----------C------------CCccc------cCCCCCCC
Q 040058          133 DIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDF-----------N------------GKDRK------NPDLVRGQ  183 (326)
Q Consensus       133 El~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~-----------~------------~~~~K------dL~~l~~~  183 (326)
                      .+..+|+....+...-++.|--.|-=|++..+ +++.           .            +..-|      =|+.++..
T Consensus        99 ~v~alT~~~~~~~~~t~~~Lk~~gi~fs~~~~-~~~~~~~~~~~~~~~~~~~~~~~GIlft~~~~KG~~L~~fL~~~~~~  177 (252)
T PF11019_consen   99 PVIALTARGPNMEDWTLRELKSLGIDFSSSSF-PEDGIISFPVFDSALSRAPSFYDGILFTGGQDKGEVLKYFLDKINQS  177 (252)
T ss_pred             cEEEEcCCChhhHHHHHHHHHHCCCCcccccc-ccCcceecccccCCCCCCceeecCeEEeCCCccHHHHHHHHHHcCCC
Confidence            99999999999999888776434333443321 1110           0            00111      23445778


Q ss_pred             CCcEEEEeCCchhhc----cCCCCeEEeCccccc
Q 040058          184 ERGIVILDDTESVWS----DHTENLIVLGKYVYF  213 (326)
Q Consensus       184 ~~~vvIvDD~~~vw~----~~~~N~I~I~~y~~f  213 (326)
                      ++.||+|||+.+.-.    .-...+|..--|+|-
T Consensus       178 pk~IIfIDD~~~nl~sv~~a~k~~~I~f~G~~Yt  211 (252)
T PF11019_consen  178 PKKIIFIDDNKENLKSVEKACKKSGIDFIGFHYT  211 (252)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHhhCCCcEEEEEEc
Confidence            999999999986442    123356666666653

The function is not known.

>PF03767 Acid_phosphat_B: HAD superfamily, subfamily IIIB (Acid phosphatase); InterPro: IPR005519 This family of class B acid phosphatases also contains a number of vegetative storage proteins (VPS25)

Probab=89.71  E-value=0.32  Score=44.83  Aligned_cols=80  Identities=21%  Similarity=0.212  Sum_probs=46.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhcccccccc-ce--eeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIG-SL--FQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~-~l--~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~  141 (326)
                      .+++.+|||+|+|++......      .........+.. ++  |.....-  ..=||..+|++.+.+. ++|++-|.=.
T Consensus        70 ~~~~avv~DIDeTvLsn~~y~------~~~~~~~~~~~~~~w~~wv~~~~~--~aip~a~~l~~~~~~~G~~V~~iT~R~  141 (229)
T PF03767_consen   70 DKPPAVVFDIDETVLSNSPYY------AYLIFGGESFSPEDWDEWVASGKA--PAIPGALELYNYARSRGVKVFFITGRP  141 (229)
T ss_dssp             TSEEEEEEESBTTTEEHHHHH------HHHHHHTHHH-CCHHHHHHHCTGG--EEETTHHHHHHHHHHTTEEEEEEEEEE
T ss_pred             CCCcEEEEECCcccccCHHHH------HHHhhccCCCChHHHHHHHhcccC--cccHHHHHHHHHHHHCCCeEEEEecCC
Confidence            689999999999999554220      000000000000 00  0001111  5669999999999877 9999999866


Q ss_pred             HHHHHHHHHHhC
Q 040058          142 RCYAEAAVKLLD  153 (326)
Q Consensus       142 ~~YA~~v~~~LD  153 (326)
                      ...-+.-++.|.
T Consensus       142 ~~~r~~T~~nL~  153 (229)
T PF03767_consen  142 ESQREATEKNLK  153 (229)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             chhHHHHHHHHH
Confidence            664444444443

The acid phosphatase activity of VPS has been experimentally demonstrated [].; GO: 0003993 acid phosphatase activity; PDB: 3PCT_C 2I34_A 2I33_A 1Z5U_D 1Z5G_A 2AUT_C 1Z88_B 3OCV_A 3OCZ_A 3OCX_A ....

>TIGR00685 T6PP trehalose-phosphatase

Probab=89.60  E-value=0.26  Score=45.44  Aligned_cols=53  Identities=17%  Similarity=0.137  Sum_probs=36.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~Y  144 (326)
                      .+|..|+||+||||+-....|.                          ..+.=|++.+.|+.|++.....|+=.+.|.+
T Consensus         1 ~~~~~l~lD~DGTL~~~~~~p~--------------------------~~~~~~~~~~~L~~L~~~~~~~v~ivSGR~~   53 (244)
T TIGR00685         1 ARKRAFFFDYDGTLSEIVPDPD--------------------------AAVVSDRLLTILQKLAARPHNAIWIISGRKF   53 (244)
T ss_pred             CCcEEEEEecCccccCCcCCCc--------------------------ccCCCHHHHHHHHHHHhCCCCeEEEEECCCh
Confidence            4788999999999997554332                          1246689999999999886554333333344

At least 18 distinct sequences from Arabidopsis have been identified, roughly half of these are of the fungal type, with a fused synthase and half are like the bacterial members having only the phosphatase domain. It has been suggested that trehalose is being used in Arabidopsis as a regulatory molecule in development and possibly other processes.

>PRK12702 mannosyl-3-phosphoglycerate phosphatase; Reviewed

Probab=89.51  E-value=0.93  Score=43.64  Aligned_cols=56  Identities=21%  Similarity=0.201  Sum_probs=39.7

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++...                               .-+-..+-|+++.+. ..+++.|.-+..=+..
T Consensus         2 KLIftDLDGTLLd~~~~-------------------------------~~~~a~~aL~~Lk~~GI~vVlaTGRt~~ev~~   50 (302)
T PRK12702          2 RLVLSSLDGSLLDLEFN-------------------------------SYGAARQALAALERRSIPLVLYSLRTRAQLEH   50 (302)
T ss_pred             cEEEEeCCCCCcCCCCc-------------------------------CCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            47889999999986521                               112245567777655 7888888887777777


Q ss_pred             HHHHhCCC
Q 040058          148 AVKLLDLD  155 (326)
Q Consensus       148 v~~~LDP~  155 (326)
                      +.+.|..+
T Consensus        51 l~~~Lgl~   58 (302)
T PRK12702         51 LCRQLRLE   58 (302)
T ss_pred             HHHHhCCC
Confidence            77777655

>PTZ00174 phosphomannomutase; Provisional

Probab=89.30  E-value=0.79  Score=42.32  Aligned_cols=16  Identities=38%  Similarity=0.470  Sum_probs=13.7

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus         5 ~klia~DlDGTLL~~~   20 (247)
T PTZ00174          5 KTILLFDVDGTLTKPR   20 (247)
T ss_pred             CeEEEEECcCCCcCCC
Confidence            4578999999999875

>TIGR01460 HAD-SF-IIA Haloacid Dehalogenase Superfamily Class (subfamily) IIA

Probab=88.62  E-value=0.49  Score=43.49  Aligned_cols=49  Identities=18%  Similarity=0.199  Sum_probs=35.0

Q ss_pred             EEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc----HHHH
Q 040058           71 LVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST----RCYA  145 (326)
Q Consensus        71 LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~----~~YA  145 (326)
                      ++||+||||+++..                                .=|++.++|+.+.+. +.+.+-|+++    ..++
T Consensus         1 ~lfD~DGvL~~~~~--------------------------------~~~~a~e~i~~l~~~g~~~~~~tN~~~~~~~~~~   48 (236)
T TIGR01460         1 FLFDIDGVLWLGHK--------------------------------PIPGAAEALNRLRAKGKPVVFLTNNSSRSEEDYA   48 (236)
T ss_pred             CEEeCcCccCcCCc--------------------------------cCcCHHHHHHHHHHCCCeEEEEECCCCCCHHHHH
Confidence            47999999999752                                235778888888655 7888887554    4566


Q ss_pred             HHHHHH
Q 040058          146 EAAVKL  151 (326)
Q Consensus       146 ~~v~~~  151 (326)
                      +.+.+.
T Consensus        49 ~~l~~~   54 (236)
T TIGR01460        49 EKLSSL   54 (236)
T ss_pred             HHHHHh
Confidence            666663

Many of the genes in this subfamily have been annotated as "pNPPase" "4-nitrophenyl phosphatase" or "NPPase". These all refer to the same activity versus a common lab test compound used to determine phosphatase activity. There is no evidence that this activity is physiologically relevant.

>PRK14502 bifunctional mannosyl-3-phosphoglycerate synthase/mannosyl-3 phosphoglycerate phosphatase; Provisional

Probab=88.59  E-value=1.2  Score=47.56  Aligned_cols=59  Identities=17%  Similarity=0.120  Sum_probs=43.9

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .++..++.||||||+++....                               -|-..+-|+.+.+. ..+++.|.-+...
T Consensus       414 ~~~KLIfsDLDGTLLd~d~~i-------------------------------~~~t~eAL~~L~ekGI~~VIATGRs~~~  462 (694)
T PRK14502        414 QFKKIVYTDLDGTLLNPLTYS-------------------------------YSTALDALRLLKDKELPLVFCSAKTMGE  462 (694)
T ss_pred             ceeeEEEEECcCCCcCCCCcc-------------------------------CHHHHHHHHHHHHcCCeEEEEeCCCHHH
Confidence            778899999999999875311                               01234556667655 8899999999888


Q ss_pred             HHHHHHHhCCC
Q 040058          145 AEAAVKLLDLD  155 (326)
Q Consensus       145 A~~v~~~LDP~  155 (326)
                      +..+++.|+..
T Consensus       463 i~~l~~~Lgl~  473 (694)
T PRK14502        463 QDLYRNELGIK  473 (694)
T ss_pred             HHHHHHHcCCC
Confidence            88888888754

>PLN02423 phosphomannomutase

Probab=88.21  E-value=0.95  Score=41.94  Aligned_cols=54  Identities=17%  Similarity=0.186  Sum_probs=33.7

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      .|..+++||||||+++..                               .+-|...+-|+++.+...++|.|--  .|. 
T Consensus         6 ~~~i~~~D~DGTLl~~~~-------------------------------~i~~~~~~ai~~l~~~i~fviaTGR--~~~-   51 (245)
T PLN02423          6 PGVIALFDVDGTLTAPRK-------------------------------EATPEMLEFMKELRKVVTVGVVGGS--DLS-   51 (245)
T ss_pred             cceEEEEeccCCCcCCCC-------------------------------cCCHHHHHHHHHHHhCCEEEEECCc--CHH-
Confidence            345666999999997642                               1345566777777776666666543  333 


Q ss_pred             HHHHHhCC
Q 040058          147 AAVKLLDL  154 (326)
Q Consensus       147 ~v~~~LDP  154 (326)
                      .+.+.+.+
T Consensus        52 ~~~~~~~~   59 (245)
T PLN02423         52 KISEQLGK   59 (245)
T ss_pred             HHHHHhcc
Confidence            44444444

>KOG3120 consensus Predicted haloacid dehalogenase-like hydrolase [General function prediction only]

Probab=88.01  E-value=0.77  Score=42.43  Aligned_cols=104  Identities=13%  Similarity=0.312  Sum_probs=66.2

Q ss_pred             CccccCceEEEEeCCCceeeecccCCC----Cccc--hhhhcccc-----ccccceeec-----------cc-eEEEEeC
Q 040058           62 SEQEERKLQLVLNLDHTLLHCRNIKSL----SSGE--KYLKKQIH-----SFIGSLFQM-----------AN-DKLVKLR  118 (326)
Q Consensus        62 s~~~~~Kl~LVLDLD~TLIhs~~~~~~----~~~e--~~l~~~~~-----~~~~~l~~~-----------~~-~~~vklR  118 (326)
                      |.+...|..+++|.|+|+|.-..+.-+    +..+  +.+.....     ++...+|+.           .. ---+..-
T Consensus         7 s~~~~~ril~~FDFD~TIid~dSD~wVv~~lp~~~l~~qL~~t~p~~~Wne~M~rv~k~Lheqgv~~~~ik~~~r~iP~~   86 (256)
T KOG3120|consen    7 SASSSPRILLVFDFDRTIIDQDSDNWVVDELPTTDLFNQLRDTYPKGFWNELMDRVFKELHEQGVRIAEIKQVLRSIPIV   86 (256)
T ss_pred             ccccCCcEEEEEecCceeecCCcchHHHHhcccchhHHHHHHhcccchHHHHHHHHHHHHHHcCCCHHHHHHHHhcCCCC
Confidence            445578999999999999987654210    0000  00000000     000001100           00 2235678


Q ss_pred             ccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec
Q 040058          119 PFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE  167 (326)
Q Consensus       119 Pgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd  167 (326)
                      ||+-+.++.+++.  ||+.|-+-++.-+.+.+++..+-. .+|. +|+|.-
T Consensus        87 Pgmv~lik~~ak~g~~eliIVSDaNsfFIe~~Lea~~~~-d~F~-~IfTNP  135 (256)
T KOG3120|consen   87 PGMVRLIKSAAKLGCFELIIVSDANSFFIEEILEAAGIH-DLFS-EIFTNP  135 (256)
T ss_pred             ccHHHHHHHHHhCCCceEEEEecCchhHHHHHHHHccHH-HHHH-HHhcCC
Confidence            9999999999866  899999999999999999999876 6776 577543

>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490

Probab=87.16  E-value=1.2  Score=39.19  Aligned_cols=49  Identities=18%  Similarity=0.253  Sum_probs=42.4

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRII  164 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~  164 (326)
                      ..++||+.++|+.+.+. +.++|-|++...+++++++.++-+ .+|+.++.
T Consensus        86 ~~~~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~-~~~~~~l~  135 (202)
T TIGR01490        86 SILYPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID-NAIGTRLE  135 (202)
T ss_pred             HhccHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc-ceEecceE
Confidence            46899999999999765 999999999999999999998876 46776555

A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.

>TIGR01548 HAD-SF-IA-hyp1 haloacid dehalogenase superfamily, subfamily IA hydrolase, TIGR01548

Probab=86.53  E-value=0.35  Score=42.73  Aligned_cols=15  Identities=27%  Similarity=0.490  Sum_probs=13.3

Q ss_pred             EEEEeCCCceeeecc
Q 040058           70 QLVLNLDHTLLHCRN   84 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~   84 (326)
                      .+++||||||++|..
T Consensus         2 ~viFD~DGTLiDs~~   16 (197)
T TIGR01548         2 ALVLDMDGVMADVSQ   16 (197)
T ss_pred             ceEEecCceEEechH
Confidence            479999999999984

All but the Halobacterium sequence currently found are annotated as "Imidazoleglycerol-phosphate dehydratase", however, the source of the annotation could not be traced and significant homology could not be found between any of these sequences and known IGPD's.

>COG4359 Uncharacterized conserved protein [Function unknown]

Probab=86.39  E-value=1.5  Score=39.63  Aligned_cols=42  Identities=10%  Similarity=0.096  Sum_probs=37.5

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCC
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLD  155 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~  155 (326)
                      -+++|||.++|.+++.+. -..+|-++|...|..++.+.|--.
T Consensus        71 ~i~Idp~fKef~e~ike~di~fiVvSsGm~~fI~~lfe~ivgk  113 (220)
T COG4359          71 DIKIDPGFKEFVEWIKEHDIPFIVVSSGMDPFIYPLFEGIVGK  113 (220)
T ss_pred             hcccCccHHHHHHHHHHcCCCEEEEeCCCchHHHHHHHhhccc
Confidence            378999999999999877 899999999999999999877544

>COG4502 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism]

Probab=85.88  E-value=0.6  Score=40.28  Aligned_cols=77  Identities=18%  Similarity=0.342  Sum_probs=48.3

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHH--HHHHH-------HhCCCCccccceEEeecCCCCCccccCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA--EAAVK-------LLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQE  184 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA--~~v~~-------~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~  184 (326)
                      .+..-||.++-++++-+.|+++|-|+++..|-  +.=.+       .|+|+.     -++    |+.   |.+-      
T Consensus        66 nL~V~p~aq~v~keLt~~y~vYivtaamdhp~s~~dK~eWl~E~FPFi~~qn-----~vf----Cgn---Kniv------  127 (180)
T COG4502          66 NLGVQPFAQTVLKELTSIYNVYIVTAAMDHPKSCEDKGEWLKEKFPFISYQN-----IVF----CGN---KNIV------  127 (180)
T ss_pred             hcCccccHHHHHHHHHhhheEEEEEeccCCchhHHHHHHHHHHHCCCCChhh-----EEE----ecC---CCeE------
Confidence            35788999999999999999999999954332  11112       234442     233    221   2221      


Q ss_pred             CcEEEEeCCchhhccCCCCeEEeC
Q 040058          185 RGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       185 ~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      +.=++|||.|..-....+|-|...
T Consensus       128 kaDilIDDnp~nLE~F~G~kIlFd  151 (180)
T COG4502         128 KADILIDDNPLNLENFKGNKILFD  151 (180)
T ss_pred             EeeEEecCCchhhhhccCceEEEe
Confidence            124688999877766666666543

>PLN02887 hydrolase family protein

Probab=85.63  E-value=1.8  Score=45.46  Aligned_cols=59  Identities=22%  Similarity=0.264  Sum_probs=43.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+...+++||||||+++..                               .+-|...+-|+++.+. ..++|.|.-...-
T Consensus       306 ~~iKLIa~DLDGTLLn~d~-------------------------------~Is~~t~eAI~kl~ekGi~~vIATGR~~~~  354 (580)
T PLN02887        306 PKFSYIFCDMDGTLLNSKS-------------------------------QISETNAKALKEALSRGVKVVIATGKARPA  354 (580)
T ss_pred             cCccEEEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCeEEEEcCCCHHH
Confidence            4556889999999998642                               1334455667777655 8889998888887


Q ss_pred             HHHHHHHhCCC
Q 040058          145 AEAAVKLLDLD  155 (326)
Q Consensus       145 A~~v~~~LDP~  155 (326)
                      +..+++.++..
T Consensus       355 i~~~l~~L~l~  365 (580)
T PLN02887        355 VIDILKMVDLA  365 (580)
T ss_pred             HHHHHHHhCcc
Confidence            88888877654

>TIGR02244 HAD-IG-Ncltidse HAD superfamily (subfamily IG) hydrolase, 5'-nucleotidase

Probab=85.42  E-value=1.1  Score=44.03  Aligned_cols=53  Identities=26%  Similarity=0.372  Sum_probs=45.1

Q ss_pred             eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh-C-----C-CCccccceEEe
Q 040058          112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLL-D-----L-DSKYFSSRIIA  165 (326)
Q Consensus       112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~L-D-----P-~~~~F~~Ri~s  165 (326)
                      ..|+.+-||+.++|+.+.+. ..+.|-|++...|++.+++.+ +     + ...||. -|++
T Consensus       180 ~~yv~~~pgl~elL~~Lr~~G~klfLvTNS~~~yt~~im~~l~g~~~~~~~w~~yFD-~IIt  240 (343)
T TIGR02244       180 EKYVLRDPKLPLFLSKLKEHGKKLFLLTNSDYDYTDKGMKYLLGPFLGEHDWRDYFD-VVIV  240 (343)
T ss_pred             HHHhccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhhCCcccccchHhhCc-EEEe
Confidence            67888999999999999766 999999999999999999997 6     2 356786 4664

A TIGRFAMs model (TIGR01993) represents a (putative) family of _pyrimidine_ 5'-nucleotidases which are also subfamily I HAD's, which should not be confused with the current model.

>PLN02151 trehalose-phosphatase

Probab=85.33  E-value=1.5  Score=43.30  Aligned_cols=59  Identities=14%  Similarity=0.102  Sum_probs=46.4

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      .+++.|+||+||||+--..+|.                          -+..-|.+.+-|+.+++.+.++|-|--...-.
T Consensus        96 ~~~~ll~lDyDGTL~PIv~~P~--------------------------~A~~~~~~~~aL~~La~~~~vaIvSGR~~~~l  149 (354)
T PLN02151         96 GKQIVMFLDYDGTLSPIVDDPD--------------------------RAFMSKKMRNTVRKLAKCFPTAIVSGRCREKV  149 (354)
T ss_pred             CCceEEEEecCccCCCCCCCcc--------------------------cccCCHHHHHHHHHHhcCCCEEEEECCCHHHH
Confidence            6889999999999995443331                          12477999999999999899999998887766


Q ss_pred             HHHHH
Q 040058          146 EAAVK  150 (326)
Q Consensus       146 ~~v~~  150 (326)
                      +.++.
T Consensus       150 ~~~~~  154 (354)
T PLN02151        150 SSFVK  154 (354)
T ss_pred             HHHcC
Confidence            66653

>PRK10725 fructose-1-P/6-phosphogluconate phosphatase; Provisional

Probab=84.99  E-value=0.47  Score=41.17  Aligned_cols=17  Identities=24%  Similarity=0.428  Sum_probs=14.5

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++|+||||++|..
T Consensus         5 ~~~viFD~DGTLiDs~~   21 (188)
T PRK10725          5 YAGLIFDMDGTILDTEP   21 (188)
T ss_pred             ceEEEEcCCCcCccCHH
Confidence            35689999999999974

>PLN03017 trehalose-phosphatase

Probab=84.50  E-value=1.7  Score=43.11  Aligned_cols=59  Identities=14%  Similarity=0.049  Sum_probs=44.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      .+++.|+||+||||+--..+|.                          ....-|.+.+-|+++++.+.++|-|--...-+
T Consensus       109 ~k~~llflD~DGTL~Piv~~p~--------------------------~a~i~~~~~~aL~~La~~~~vaIvSGR~~~~l  162 (366)
T PLN03017        109 GKQIVMFLDYDGTLSPIVDDPD--------------------------KAFMSSKMRRTVKKLAKCFPTAIVTGRCIDKV  162 (366)
T ss_pred             CCCeEEEEecCCcCcCCcCCcc--------------------------cccCCHHHHHHHHHHhcCCcEEEEeCCCHHHH
Confidence            6789999999999994433221                          01356888899999998899999988887777


Q ss_pred             HHHHH
Q 040058          146 EAAVK  150 (326)
Q Consensus       146 ~~v~~  150 (326)
                      ..+.+
T Consensus       163 ~~~~~  167 (366)
T PLN03017        163 YNFVK  167 (366)
T ss_pred             HHhhc
Confidence            76643

>TIGR02726 phenyl_P_delta phenylphosphate carboxylase, delta subunit

Probab=83.10  E-value=2.3  Score=37.43  Aligned_cols=117  Identities=9%  Similarity=0.084  Sum_probs=69.4

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHH-HHHHHhhcCceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVR-TFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~-eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      =..+|+|.||||-.-+..-. ..++            +      ..-...|-|.- ..|+  .+.+.+.|.|++...+++
T Consensus         7 i~~~v~d~dGv~tdg~~~~~-~~g~------------~------~~~~~~~D~~~~~~L~--~~Gi~laIiT~k~~~~~~   65 (169)
T TIGR02726         7 IKLVILDVDGVMTDGRIVIN-DEGI------------E------SRNFDIKDGMGVIVLQ--LCGIDVAIITSKKSGAVR   65 (169)
T ss_pred             CeEEEEeCceeeECCeEEEc-CCCc------------E------EEEEecchHHHHHHHH--HCCCEEEEEECCCcHHHH
Confidence            46789999999988753211 0010            0      11123454432 2333  245899999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcc
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKY  210 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y  210 (326)
                      .+++.+.-. .+|.. +  .. -...+..-++.++-+++.++.|.|+..=.......++.+.+-
T Consensus        66 ~~l~~lgi~-~~f~~-~--kp-kp~~~~~~~~~l~~~~~ev~~iGD~~nDi~~~~~ag~~~am~  124 (169)
T TIGR02726        66 HRAEELKIK-RFHEG-I--KK-KTEPYAQMLEEMNISDAEVCYVGDDLVDLSMMKRVGLAVAVG  124 (169)
T ss_pred             HHHHHCCCc-EEEec-C--CC-CHHHHHHHHHHcCcCHHHEEEECCCHHHHHHHHHCCCeEECc
Confidence            999999876 56653 1  10 011122334456667788999999974333223344544443

Members of this protein family are the alpha subunit of phenylphosphate carboxylase. Phenol (methyl-benzene) is converted to phenylphosphate, then para-carboxylated by this four-subunit enzyme, with the release of phosphate, to 4-hydroxybenzoate. The enzyme contains neither biotin nor thiamin pyrophosphate. This delta subunit belongs to HAD family hydrolases.

>PLN02580 trehalose-phosphatase

Probab=83.05  E-value=2  Score=42.90  Aligned_cols=59  Identities=15%  Similarity=0.122  Sum_probs=47.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      .+++.|+||.||||.--..+|.                          -+..-|++++-|+.+++.+.++|-|--.+.-.
T Consensus       117 ~k~~~LfLDyDGTLaPIv~~Pd--------------------------~A~~s~~~~~aL~~La~~~~VAIVSGR~~~~L  170 (384)
T PLN02580        117 GKKIALFLDYDGTLSPIVDDPD--------------------------RALMSDAMRSAVKNVAKYFPTAIISGRSRDKV  170 (384)
T ss_pred             cCCeEEEEecCCccCCCCCCcc--------------------------cccCCHHHHHHHHHHhhCCCEEEEeCCCHHHH
Confidence            7889999999999986554432                          12577899999999999999999998888877


Q ss_pred             HHHHH
Q 040058          146 EAAVK  150 (326)
Q Consensus       146 ~~v~~  150 (326)
                      +..+.
T Consensus       171 ~~~l~  175 (384)
T PLN02580        171 YELVG  175 (384)
T ss_pred             HHHhC
Confidence            76664

>PRK11587 putative phosphatase; Provisional

Probab=82.64  E-value=0.66  Score=41.68  Aligned_cols=16  Identities=25%  Similarity=0.374  Sum_probs=14.1

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..++|||||||++|..
T Consensus         4 k~viFDlDGTL~Ds~~   19 (218)
T PRK11587          4 KGFLFDLDGTLVDSLP   19 (218)
T ss_pred             CEEEEcCCCCcCcCHH
Confidence            4689999999999974

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=81.36  E-value=1.8  Score=37.75  Aligned_cols=78  Identities=15%  Similarity=0.128  Sum_probs=56.7

Q ss_pred             eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCcc----ccCCCCCCCCCc
Q 040058          112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDR----KNPDLVRGQERG  186 (326)
Q Consensus       112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~----KdL~~l~~~~~~  186 (326)
                      ...-.+||++.++|+++.+. +.+.|.|..++..|..+++.+.....    .++++.. .....    +-++.++.+.+.
T Consensus       123 ~~~d~~~~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~~~----~v~a~~~-~kP~~k~~~~~i~~l~~~~~~  197 (215)
T PF00702_consen  123 GLRDPLRPGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIFDS----IVFARVI-GKPEPKIFLRIIKELQVKPGE  197 (215)
T ss_dssp             EEEEEBHTTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSCSE----EEEESHE-TTTHHHHHHHHHHHHTCTGGG
T ss_pred             eecCcchhhhhhhhhhhhccCcceeeeeccccccccccccccccccc----ccccccc-ccccchhHHHHHHHHhcCCCE
Confidence            45567899999999999987 99999999999999999999988432    2332221 11112    223345556668


Q ss_pred             EEEEeCCc
Q 040058          187 IVILDDTE  194 (326)
Q Consensus       187 vvIvDD~~  194 (326)
                      |++|-|..
T Consensus       198 v~~vGDg~  205 (215)
T PF00702_consen  198 VAMVGDGV  205 (215)
T ss_dssp             EEEEESSG
T ss_pred             EEEEccCH
Confidence            99999876

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR01454 AHBA_synth_RP 3-amino-5-hydroxybenoic acid synthesis related protein

Probab=81.14  E-value=0.54  Score=41.64  Aligned_cols=14  Identities=29%  Similarity=0.465  Sum_probs=12.5

Q ss_pred             EEEeCCCceeeecc
Q 040058           71 LVLNLDHTLLHCRN   84 (326)
Q Consensus        71 LVLDLD~TLIhs~~   84 (326)
                      +||||||||++|..
T Consensus         1 iiFDlDGTL~Ds~~   14 (205)
T TIGR01454         1 VVFDLDGVLVDSFA   14 (205)
T ss_pred             CeecCcCccccCHH
Confidence            58999999999974

The most closely related enzyme below the noise cutoff is IndB which is involved in the biosynthesis of Indigoidine in Pectobacterium (Erwinia) chrysanthemi, a gamma proteobacter. This enzyme is similarly related to PGP. In this case, too it is unclear what role would be be played by a PGPase activity.

>TIGR02253 CTE7 HAD superfamily (subfamily IA) hydrolase, TIGR02253

Probab=80.74  E-value=0.86  Score=40.58  Aligned_cols=16  Identities=25%  Similarity=0.486  Sum_probs=14.0

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..++|||||||+++..
T Consensus         3 ~~viFDlDGTL~ds~~   18 (221)
T TIGR02253         3 KAIFFDLDDTLIDTSG   18 (221)
T ss_pred             eEEEEeCCCCCcCCCC
Confidence            4689999999999874

This family is a member of the haloacid dehalogenase (HAD) superfamily of hydrolases which are characterized by three conserved sequence motifs. By virtue of an alpha helical domain in-between the first and second conserved motif, this family is a member of subfamily IA (TIGR01549).

>TIGR02252 DREG-2 REG-2-like, HAD superfamily (subfamily IA) hydrolase

Probab=80.31  E-value=1  Score=39.69  Aligned_cols=15  Identities=20%  Similarity=0.262  Sum_probs=13.2

Q ss_pred             EEEEeCCCceeeecc
Q 040058           70 QLVLNLDHTLLHCRN   84 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~   84 (326)
                      .++|||||||+++..
T Consensus         2 ~viFDlDGTL~d~~~   16 (203)
T TIGR02252         2 LITFDAVGTLLALKE   16 (203)
T ss_pred             eEEEecCCceeeeCC
Confidence            589999999999863

Most likely, these sequences, like the vast majority of HAD sequences, represent phosphatase enzymes.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	326
3ef0_A	372	The Structure Of Fcp1, An Essential Rna Polymerase		4e-09
3ef1_A	442	The Structure Of Fcp1, An Essential Rna Polymerase		7e-09
2ghq_A	181	Ctd-Specific Phosphatase Scp1 In Complex With Pepti		2e-04
3pgl_A	180	Crystal Structure Of Human Small C-Terminal Domain		8e-04

>pdb|3EF0|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 372

Iteration: 1
 Score = 58.9 bits (141), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 42/161 (26%), Positives = 79/161 (49%), Gaps = 13/161 (8%)
Query: 64  QEERKLQLVLNLDHTLLHCR---NIKSLSSGEKYLKKQIHSFIGSLFQMANDK------- 113
           ++E++L L+++LD T++H      +    S    +   +   + S F +           
Sbjct: 14  RQEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRS-FNLQEGPSGYTSCY 72
Query: 114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKD 173
            +K RP +  FL++ S L ++++ TM T+ YA+   K++D   K F  R+++R+D     
Sbjct: 73  YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLA 132
Query: 174 RKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
           +K+   L       +V++DD   VW D   NLI +  Y +F
Sbjct: 133 QKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 172

>pdb|3EF1|A Chain A, The Structure Of Fcp1, An Essential Rna Polymerase Ii Ctd Phosphatase Length = 442

Iteration: 1
 Score = 57.8 bits (138), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 42/172 (24%), Positives = 81/172 (47%), Gaps = 35/172 (20%)
Query: 64  QEERKLQLVLNLDHTLLHC---------------------RNIKSLSSGEKYLKKQIHSF 102
           ++E++L L++ LD T++H                      R+++S +     L++    +
Sbjct: 22  RQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFN-----LQEGPSGY 76
Query: 103 IGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSR 162
               +       +K RP +  FL++ S L ++++ TM T+ YA+   K++D   K F  R
Sbjct: 77  TSCYY-------IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDR 129
Query: 163 IIAREDFNGKDRKN-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYF 213
           +++R+D     +K+   L       +V++DD   VW D   NLI +  Y +F
Sbjct: 130 VLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVW-DWNPNLIKVVPYEFF 180

>pdb|2GHQ|A Chain A, Ctd-Specific Phosphatase Scp1 In Complex With Peptide C- Terminal Domain Of Rna Polymerase Ii Length = 181

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 64  QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
           Q+  K+ +V+NLD TL+H  + K +++ +  +  +I   +  ++ +        RP V  
Sbjct: 11  QDSDKICVVINLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 62
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
           FL++   L +  L T S   YA+    LLD     F +R+        +     DL R G
Sbjct: 63  FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 121
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
           ++ R ++ILD++ + +  H +N + +  +
Sbjct: 122 RDLRRVLILDNSPASYVFHPDNAVPVASW 150

>pdb|3PGL|A Chain A, Crystal Structure Of Human Small C-Terminal Domain Phosphatase 1 (Scp1) Bound To Rabeprazole Length = 180

Iteration: 1
 Score = 41.2 bits (95), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 36/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 64  QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRT 123
           Q+  K+ +V++LD TL+H  + K +++ +  +  +I   +  ++ +        RP V  
Sbjct: 10  QDSDKICVVIDLDETLVHS-SFKPVNNADFIIPVEIDGVVHQVYVLK-------RPHVDE 61
Query: 124 FLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVR-G 182
           FL++   L +  L T S   YA+    LLD     F +R+        +     DL R G
Sbjct: 62  FLQRMGELFECVLFTASLAKYADPVADLLD-KWGAFRARLFRESCVFHRGNYVKDLSRLG 120
Query: 183 QE-RGIVILDDTESVWSDHTENLIVLGKY 210
           ++ R ++ILD++ + +  H +N + +  +
Sbjct: 121 RDLRRVLILDNSPASYVFHPDNAVPVASW 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	326
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	1e-34
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	3e-27
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	3e-15
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	2e-14
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	4e-14
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	1e-05

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe} Length = 372

 Score =  128 bits (323), Expect = 1e-34
 Identities = 64/363 (17%), Positives = 119/363 (32%), Gaps = 109/363 (30%)

Query: 65  EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDK---------LV 115
           +E++L L+++LD T++H     ++           +  +  +      +          +
Sbjct: 15  QEKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYI 74

Query: 116 KLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRK 175
           K RP +  FL++ S L ++++ TM T+ YA+   K++D   K F  R+++R+D     +K
Sbjct: 75  KFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQK 134

Query: 176 N-PDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD------------------- 215
           +   L       +V++DD   VW  +  NLI +  Y +F                     
Sbjct: 135 SLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGIGDINSNFLSGNREALEEQ 193

Query: 216 ---------------------KELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFF 254
                                  L  D    + + T     +  L  + +VLK IH +++
Sbjct: 194 NKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYY 253

Query: 255 DSVCG-----------DVRTYLPKVRSE-FSRDVLYFSAIFRD----------------- 285
           +               +V   +PK++ +      L FS +                    
Sbjct: 254 EEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFG 313

Query: 286 -----------------------CLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPED 322
                                     A       V      V   W+      W+R PE 
Sbjct: 314 AEVVLDFSVPPTHLIAAKIRTEKVKKAVSMGNIKV------VKLNWLTESLSQWKRLPES 367

Query: 323 DYL 325
           DYL
Sbjct: 368 DYL 370

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe} Length = 442

 Score =  109 bits (273), Expect = 3e-27
 Identities = 40/185 (21%), Positives = 83/185 (44%), Gaps = 13/185 (7%)

Query: 64  QEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDK---------L 114
           ++E++L L++ LD T++H     ++           +  +  +      +          
Sbjct: 22  RQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYY 81

Query: 115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDR 174
           +K RP +  FL++ S L ++++ TM T+ YA+   K++D   K F  R+++R+D     +
Sbjct: 82  IKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQ 141

Query: 175 KNPDLVRGQE-RGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDES 233
           K+   +   +   +V++DD   VW  +  NLI +  Y +F          ++    T   
Sbjct: 142 KSLRRLFPCDTSMVVVIDDRGDVWDWN-PNLIKVVPYEFFVGIGDINS--NFLAKSTPLP 198

Query: 234 ENEEA 238
           E E+ 
Sbjct: 199 EQEQL 203

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118} Length = 204

 Score = 72.4 bits (178), Expect = 3e-15
 Identities = 36/217 (16%), Positives = 67/217 (30%), Gaps = 62/217 (28%)

Query: 63  EQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVR 122
              +R L LV+ L+  L+H                         +   +      RP   
Sbjct: 29  PPYQRPLTLVITLEDFLVHSE-----------------------WSQKHGWRTAKRPGAD 65

Query: 123 TFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED---FNGKDRK---- 175
            FL   S   +I L + +   Y++   + LD    + S   + +E     +G   K    
Sbjct: 66  YFLGYLSQYYEIVLFSSNYMMYSDKIAEKLDPIHAFVSYN-LFKEHCVYKDGVHIKDLSK 124

Query: 176 -NPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESE 234
            N DL +     ++I+D   + +    EN I +  +                       E
Sbjct: 125 LNRDLSK-----VIIIDTDPNSYKLQPENAIPMEPW---------------------NGE 158

Query: 235 NEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSE 271
            ++ L  ++  L+ +          DVR  L     +
Sbjct: 159 ADDKLVRLIPFLEYLATQQTK----DVRPILNSFEDK 191

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens} Length = 195

 Score = 69.3 bits (170), Expect = 2e-14
 Identities = 40/211 (18%), Positives = 77/211 (36%), Gaps = 47/211 (22%)

Query: 62  SEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFV 121
           +  +  K  +V++LD TL+H           K +          +    +   V  RP V
Sbjct: 22  TVLDYGKKCVVIDLDETLVHSS--------FKPISNADFIVPVEIDGTIHQVYVLKRPHV 73

Query: 122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI-----IAREDFNGKD--R 174
             FL++   L +  L T S   YA+    LLD     F +R+     +       KD  R
Sbjct: 74  DEFLQRMGQLFECVLFTASLAKYADPVADLLDRW-GVFRARLFRESCVFHRGNYVKDLSR 132

Query: 175 KNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESE 234
              +L +     ++I+D++ + +  H EN + +               +S+ + +TD   
Sbjct: 133 LGRELSK-----VIIVDNSPASYIFHPENAVPV---------------QSWFDDMTD--- 169

Query: 235 NEEALANVLRVLKTIHRLFFDSVCGDVRTYL 265
               L +++   + + R        D   + 
Sbjct: 170 --TELLDLIPFFEGLSR------EDDEGHHH 192

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A Length = 181

 Score = 68.5 bits (168), Expect = 4e-14
 Identities = 44/210 (20%), Positives = 78/210 (37%), Gaps = 47/210 (22%)

Query: 63  EQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVR 122
            Q+  K+ +V+NLD TL+H           K +          +  + +   V  RP V 
Sbjct: 10  AQDSDKICVVINLDETLVHSS--------FKPVNNADFIIPVEIDGVVHQVYVLKRPHVD 61

Query: 123 TFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRI-----IAREDFNGKD--RK 175
            FL++   L +  L T S   YA+    LLD     F +R+     +       KD  R 
Sbjct: 62  EFLQRMGELFECVLFTASLAKYADPVADLLDKW-GAFRARLFRESCVFHRGNYVKDLSRL 120

Query: 176 NPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESEN 235
             DL R     ++ILD++ + +  H +N + +  +          +             +
Sbjct: 121 GRDLRR-----VLILDNSPASYVFHPDNAVPVASWF--------DN------------MS 155

Query: 236 EEALANVLRVLKTIHRLFFDSVCGDVRTYL 265
           +  L ++L   + + R        DV + L
Sbjct: 156 DTELHDLLPFFEQLSR------VDDVYSVL 179

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 58.7 bits (141), Expect = 1e-09
 Identities = 55/433 (12%), Positives = 133/433 (30%), Gaps = 134/433 (30%)

Query: 4   YSCKECVGKTKFVI-KRKCEQSLSCAHTTVRDSRCIFC---------SQAMNDSFGLSFD 53
           + CK+     K ++ K + +  +          R  +           + + +   +++ 
Sbjct: 33  FDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYK 92

Query: 54  YMLRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDK 113
           +++  ++  EQ +  +   + ++      R+ +  +  + + K  +       +      
Sbjct: 93  FLMSPIKT-EQRQPSMMTRMYIE-----QRD-RLYNDNQVFAKYNVSRL--QPYLKLRQA 143

Query: 114 LVKLRPFVRTFLEQA-----SSLV---------------DIYLCTMSTRCYAEAAVKLL- 152
           L++LRP     ++       + +                 I+   +      E  +++L 
Sbjct: 144 LLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQ 203

Query: 153 ----DLDSKY-----FSSRIIAREDFNGKDRKNPDLVRGQ--ERGIVILDDTESVWSDHT 201
                +D  +      SS I  R   + +      L++ +  E  +++L +   V +   
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIH-SIQAELR-RLLKSKPYENCLLVLLN---VQN--- 255

Query: 202 ENLI--------VLGKYVYFRDKE----LNGDHKSY------SETLTDESENEEALANVL 243
                       +L   +  R K+    L+    ++      S TLT   E +  L   L
Sbjct: 256 AKAWNAFNLSCKIL---LTTRFKQVTDFLSAATTTHISLDHHSMTLT-PDEVKSLLLKYL 311

Query: 244 --------RVLKTIHRLFFDSVCG-------DVRTYLPKVRS-------EFSRDVL---- 277
                   R + T +     S+                 V         E S +VL    
Sbjct: 312 DCRPQDLPREVLTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAE 370

Query: 278 ---YFS--AIFRD----------CLWAE---QEEKFLVQE--KKFLVHPRW------IDA 311
               F   ++F             +W +    +   +V +  K  LV  +       I +
Sbjct: 371 YRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPS 430

Query: 312 YYFLWRRRPEDDY 324
            Y   + + E++Y
Sbjct: 431 IYLELKVKLENEY 443

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 43.7 bits (102), Expect = 7e-05
 Identities = 55/333 (16%), Positives = 97/333 (29%), Gaps = 74/333 (22%)

Query: 23  QSLSCAHTTVRDSRCIFCSQAMNDSFGL-SFDYMLRGLRYSEQEERKLQLVLN------- 74
           Q L      +  +       + N    + S    LR L  S+  E  L LVL        
Sbjct: 203 QKL---LYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQNAKA 258

Query: 75  LDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLE-QASSLVD 133
            +   L C+ +  L++  K    Q+  F+ +    A    + L     T    +  SL+ 
Sbjct: 259 WNAFNLSCKIL--LTTRFK----QVTDFLSA----ATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 134 IYLCTMSTRCYAEAAVKLLDLDSKYFSSRI---IAREDF---NGKDRKN----------- 176
            YL     +      +          +  I   +A  D       D+             
Sbjct: 309 KYL-DCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLE 367

Query: 177 PDLVRGQERGIVIL-DDT-------ESVWSDHTEN--LIVLGKYVYFRDKEL-NGDHKSY 225
           P   R     + +              +W D  ++  ++V+ K        L     K  
Sbjct: 368 PAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNK---LHKYSLVEKQPKES 424

Query: 226 SETLTD-------ESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRSEFSRDVLY 278
           + ++         + ENE AL          HR   D      +T+          D  +
Sbjct: 425 TISIPSIYLELKVKLENEYAL----------HRSIVDHY-NIPKTFDSDDLIPPYLDQYF 473

Query: 279 FSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDA 311
           +S I       E  E+  +    FL   R+++ 
Sbjct: 474 YSHIGHHLKNIEHPERMTLFRMVFL-DFRFLEQ 505

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster} Length = 320

 Score = 45.6 bits (107), Expect = 1e-05
 Identities = 28/184 (15%), Positives = 61/184 (33%), Gaps = 46/184 (25%)

Query: 56  LRGLRYSEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLV 115
            +    +   E K  LVL++D+TL   R+                         A     
Sbjct: 128 YKIKELAPPREGKKLLVLDIDYTLFDHRS------------------------PAETGTE 163

Query: 116 KLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED------- 168
            +RP++  FL  A    DI + + ++  + E  ++LL +     + +++   D       
Sbjct: 164 LMRPYLHEFLTSAYEDYDIVIWSATSMRWIEEKMRLLGVA-SNDNYKVMFYLDSTAMISV 222

Query: 169 ----FNGKDRKNPDLVRGQERG-----IVILDDTESVWSDHTENLIVLGKYVYF-----R 214
                   D K   ++    +       ++ DD    +  + ++ + +  +         
Sbjct: 223 HVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSGLKIRPFRQAHLNRGT 282

Query: 215 DKEL 218
           D EL
Sbjct: 283 DTEL 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	326
3ef1_A	442	RNA polymerase II subunit A C-terminal domain phos	100.0
3ef0_A	372	RNA polymerase II subunit A C-terminal domain phos	100.0
3qle_A	204	TIM50P; chaperone, mitochondrion, preprotein trans	100.0
2ght_A	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
3shq_A	320	UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila	99.98
2hhl_A	195	CTD small phosphatase-like protein; CTD phosphatas	99.97
3l3e_A	107	DNA topoisomerase 2-binding protein 1; BRCT domain	98.76
2cou_A	109	ECT2 protein; BRCT domain, RHO GTPase, structural	98.55
3l46_A	112	Protein ECT2; alternative splicing, guanine-nucleo	98.4
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	98.4
2fpr_A	176	Histidine biosynthesis bifunctional protein HISB;	98.33
3pa6_A	107	Microcephalin; BRCT domain, cell cycle; HET: MSE;	98.31
3kbb_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	98.3
2d8m_A	129	DNA-repair protein XRCC1; parallel beta-sheet, DNA	98.28
3ib6_A	189	Uncharacterized protein; structural genomics, unkn	98.27
3m9l_A	205	Hydrolase, haloacid dehalogenase-like family; HAD	98.24
2pr7_A	137	Haloacid dehalogenase/epoxide hydrolase family; NP	98.24
4id3_A	92	DNA repair protein REV1; BRCT domain, protein bind	98.18
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	98.1
3kzx_A	231	HAD-superfamily hydrolase, subfamily IA, variant;	98.09
1wf6_A	132	Similar to S.pombe -RAD4+/CUT5+product (A40727); B	98.01
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	97.97
3m1y_A	217	Phosphoserine phosphatase (SERB); NYSGXRC, PSI II,	97.95
2gmw_A	211	D,D-heptose 1,7-bisphosphate phosphatase; Zn-bindi	97.94
2p9j_A	162	Hypothetical protein AQ2171; secsg, riken, PSI, st	97.93
3umb_A	233	Dehalogenase-like hydrolase; 2.20A {Ralstonia sola	97.93
3um9_A	230	Haloacid dehalogenase, type II; haloacid dehalogen	97.91
2no4_A	240	(S)-2-haloacid dehalogenase IVA; HAD superfamily,	97.86
2oda_A	196	Hypothetical protein pspto_2114; haloacid dehaloge	97.81
2i6x_A	211	Hydrolase, haloacid dehalogenase-like family; HAD	97.78
2w43_A	201	Hypothetical 2-haloalkanoic acid dehalogenase; hyd	97.77
1qq5_A	253	Protein (L-2-haloacid dehalogenase); hydrolase; 1.	97.77
3zvl_A	416	Bifunctional polynucleotide phosphatase/kinase; hy	97.77
2ebw_A	97	DNA repair protein REV1; A/B/A 3 layers, parallel	97.72
3nuq_A	282	Protein SSM1, putative nucleotide phosphatase; sup	97.7
3pc6_A	104	DNA repair protein XRCC1; BRCT domain, protein:pro	97.67
3iru_A	277	Phoshonoacetaldehyde hydrolase like protein; phosp	97.66
4eze_A	317	Haloacid dehalogenase-like hydrolase; magnesium bi	97.59
2o2x_A	218	Hypothetical protein; structural genomics, joint c	97.55
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	97.53
2i7d_A	193	5'(3')-deoxyribonucleotidase, cytosolic type; hydr	97.51
1k1e_A	180	Deoxy-D-mannose-octulosonate 8-phosphate phosphat;	97.48
3bwv_A	180	Putative 5'(3')-deoxyribonucleotidase; NP_764060.1	97.42
3e8m_A	164	Acylneuraminate cytidylyltransferase; 2-keto-3-deo	97.38
3sqd_A	219	PAX-interacting protein 1; tandem BRCT domains, ce	97.34
3mn1_A	189	Probable YRBI family phosphatase; structural genom	97.33
3nvb_A	387	Uncharacterized protein; protein FKBH, protein fkb	97.3
3ij5_A	211	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	97.22
3mmz_A	176	Putative HAD family hydrolase; structural genomics	97.21
3n07_A	195	3-deoxy-D-manno-octulosonate 8-phosphate phosphat;	97.14
3n1u_A	191	Hydrolase, HAD superfamily, subfamily III A; struc	97.06
3p96_A	415	Phosphoserine phosphatase SERB; ssgcid, structural	97.05
2r8e_A	188	3-deoxy-D-manno-octulosonate 8-phosphate phosphata	96.99
4ap9_A	201	Phosphoserine phosphatase; hydrolase, haloacid deh	96.94
2obb_A	142	Hypothetical protein; structural genomics, PSI-2,	96.9
3l41_A	220	BRCT-containing protein 1; BRC1, BRCT domain, tand	96.83
2i33_A	258	Acid phosphatase; HAD superfamily, hydrolase; 1.57	96.81
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	96.75
3skx_A	280	Copper-exporting P-type ATPase B; P1B-ATPase, ATP	96.69
2gfh_A	260	Haloacid dehalogenase-like hydrolase domain conta;	96.68
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	96.62
2nyv_A	222	Pgpase, PGP, phosphoglycolate phosphatase; structu	96.53
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	96.52
3pct_A	260	Class C acid phosphatase; hydrolase, outer membran	96.5
3qnm_A	240	Haloacid dehalogenase-like hydrolase; structural g	96.5
3ed5_A	238	YFNB; APC60080, bacillus subtilis subsp. subtilis	96.48
1rku_A	206	Homoserine kinase; phosphoserine phosphatase, phos	96.47
3sd7_A	240	Putative phosphatase; structural genomics, haloaci	96.45
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	96.4
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	96.38
3s6j_A	233	Hydrolase, haloacid dehalogenase-like family; stru	96.37
2hoq_A	241	Putative HAD-hydrolase PH1655; haloacid dehalogena	96.29
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	96.28
2hsz_A	243	Novel predicted phosphatase; structural genomics,	96.23
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	96.19
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	96.18
4eek_A	259	Beta-phosphoglucomutase-related protein; hydrolase	96.14
3ocu_A	262	Lipoprotein E; hydrolase, outer membrane; HET: NMN	96.12
3olc_X	298	DNA topoisomerase 2-binding protein 1; BRCT domain	95.96
2zg6_A	220	Putative uncharacterized protein ST2620, probable	95.94
1yns_A	261	E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo	95.91
3u26_A	234	PF00702 domain protein; structural genomics, PSI-b	95.84
4dcc_A	229	Putative haloacid dehalogenase-like hydrolase; mag	95.83
1qyi_A	384	ZR25, hypothetical protein; structural genomics, P	95.81
2nte_A	210	BARD-1, BRCA1-associated ring domain protein 1; BR	95.77
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	95.75
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	95.71
1l0b_A	229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	95.67
3al2_A	235	DNA topoisomerase 2-binding protein 1; BRCT domain	95.66
1t15_A	214	Breast cancer type 1 susceptibility protein; prote	95.63
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	95.59
2b82_A	211	APHA, class B acid phosphatase; DDDD acid phosphat	95.55
3a1c_A	287	Probable copper-exporting P-type ATPase A; ATP-bin	95.5
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	95.38
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	95.2
1wr8_A	231	Phosphoglycolate phosphatase; alpha / beta core do	95.16
3qxg_A	243	Inorganic pyrophosphatase; hydrolase, magnesium bi	95.15
3dv9_A	247	Beta-phosphoglucomutase; structural genomics, APC6	95.13
2fea_A	236	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	95.09
3kc2_A	352	Uncharacterized protein YKR070W; HAD-like, mitocho	95.08
4g9b_A	243	Beta-PGM, beta-phosphoglucomutase; HAD, putative p	95.08
2om6_A	235	Probable phosphoserine phosphatase; rossmann fold,	95.06
3k1z_A	263	Haloacid dehalogenase-like hydrolase domain-conta	95.01
3fvv_A	232	Uncharacterized protein; unknown function, structu	94.99
3smv_A	240	S-(-)-azetidine-2-carboxylate hydrolase; haloacid	94.98
1l6r_A	227	Hypothetical protein TA0175; structural genomics,	94.96
3umc_A	254	Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeru	94.96
1te2_A	226	Putative phosphatase; structural genomics, phospha	94.94
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	94.85
1ltq_A	301	Polynucleotide kinase; phosphatase, alpha/beta, P-	94.84
3nas_A	233	Beta-PGM, beta-phosphoglucomutase; PSI, structural	94.82
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	94.81
1xpj_A	126	Hypothetical protein; structural genomics, MCSG, p	94.7
3umg_A	254	Haloacid dehalogenase; defluorinase, hydrolase; 2.	94.6
3qgm_A	268	P-nitrophenyl phosphatase (PHO2); structural genom	94.53
3mpo_A	279	Predicted hydrolase of the HAD superfamily; SGX, P	94.5
3u3z_A	199	Microcephalin; DNA repair, cell cycle regulation,	94.48
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	94.45
2jw5_A	106	DNA polymerase lambda; BRCT domain, family X polym	94.36
3dnp_A	290	Stress response protein YHAX; structural PSI-2, pr	94.27
1xvi_A	275	MPGP, YEDP, putative mannosyl-3-phosphoglycerate p	94.21
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	94.2
4dw8_A	279	Haloacid dehalogenase-like hydrolase; HAD, putativ	94.17
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	94.16
2qlt_A	275	(DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, sac	94.14
3ewi_A	168	N-acylneuraminate cytidylyltransferase; beta barre	94.12
3pgv_A	285	Haloacid dehalogenase-like hydrolase; structural g	94.09
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	94.02
1nrw_A	288	Hypothetical protein, haloacid dehalogenase-like h	93.87
3epr_A	264	Hydrolase, haloacid dehalogenase-like family; stru	93.82
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	93.8
1vjr_A	271	4-nitrophenylphosphatase; TM1742, structural genom	93.71
2pq0_A	258	Hypothetical conserved protein GK1056; hyopthetica	93.66
3l5k_A	250	Protein GS1, haloacid dehalogenase-like hydrolase	93.61
1l0b_A	229	BRCA1; TANDEM-BRCT, three-helix bundle, unknown fu	93.58
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	93.53
3u3z_A	199	Microcephalin; DNA repair, cell cycle regulation,	93.53
1nf2_A	268	Phosphatase; structural proteomics, HAD NEW fold,	93.49
3dao_A	283	Putative phosphatse; structural genomics, joint ce	93.18
3i28_A	555	Epoxide hydrolase 2; aromatic hydrocarbons catabol	93.12
2g80_A	253	Protein UTR4; YEL038W, UTR4 protein (unknown trans	93.1
3pdw_A	266	Uncharacterized hydrolase YUTF; structural genomic	93.1
2hx1_A	284	Predicted sugar phosphatases of the HAD superfamil	93.0
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	92.88
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	92.84
2zos_A	249	MPGP, mannosyl-3-phosphoglycerate phosphatase; hal	92.64
1rkq_A	282	Hypothetical protein YIDA; two domain structure wi	92.63
1t15_A	214	Breast cancer type 1 susceptibility protein; prote	92.59
1zjj_A	263	Hypothetical protein PH1952; alpha/beta hydrolase	92.45
3fzq_A	274	Putative hydrolase; YP_001086940.1, putative haloa	92.3
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	92.16
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	92.16
2yj3_A	263	Copper-transporting ATPase; hydrolase, P-type ATPa	91.35
1s2o_A	244	SPP, sucrose-phosphatase; phosphohydrolase, HAD su	92.09
2fue_A	262	PMM 1, PMMH-22, phosphomannomutase 1; enzyme-produ	92.03
2ho4_A	259	Haloacid dehalogenase-like hydrolase domain contai	91.93
1swv_A	267	Phosphonoacetaldehyde hydrolase; HAD enzyme superf	91.82
3vay_A	230	HAD-superfamily hydrolase; rossmann fold, haloacid	91.63
2oyc_A	306	PLP phosphatase, pyridoxal phosphate phosphatase;	91.56
2x4d_A	271	HLHPP, phospholysine phosphohistidine inorganic py	91.43
2amy_A	246	PMM 2, phosphomannomutase 2; HS.459855, HS.313504,	91.39
2c4n_A	250	Protein NAGD; nucleotide phosphatase, HAD superfam	91.01
3gyg_A	289	NTD biosynthesis operon putative hydrolase NTDB; P	90.98
2b30_A	301	Pvivax hypothetical protein; SGPP, structural geno	90.92
1yv9_A	264	Hydrolase, haloacid dehalogenase family; hypotheti	90.7
3r4c_A	268	Hydrolase, haloacid dehalogenase-like hydrolase; h	90.44
3n28_A	335	Phosphoserine phosphatase; HAD family hydrolase, s	90.43
3l7y_A	304	Putative uncharacterized protein SMU.1108C; hydrol	90.31
2etx_A	209	Mediator of DNA damage checkpoint protein 1; tande	90.24
3f9r_A	246	Phosphomannomutase; trypanosome glycobiology struc	89.89
3ii6_X	263	DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alter	89.69
2rbk_A	261	Putative uncharacterized protein; HAD-like phospha	89.56
1u02_A	239	Trehalose-6-phosphate phosphatase related protein;	89.25
1rlm_A	271	Phosphatase; HAD family, rossman fold, hydrolase;	89.09
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	88.62
1l7m_A	211	Phosphoserine phosphatase; rossmann fold, four-hel	88.11
3zx4_A	259	MPGP, mannosyl-3-phosphoglycerate phosphatase; hyd	87.64
1q92_A	197	5(3)-deoxyribonucleotidase; alpha-beta rossman fol	87.57
2ep8_A	100	Pescadillo homolog 1; A/B/A 3 layers, nucleolus, r	86.74
2vxb_A	241	DNA repair protein RHP9; BRCT, nucleus, cell cycle	85.61
2hcf_A	234	Hydrolase, haloacid dehalogenase-like family; NP_6	83.53
2p11_A	231	Hypothetical protein; putative haloacid dehalogena	83.37
3d6j_A	225	Putative haloacid dehalogenase-like hydrolase; str	83.25
2ah5_A	210	COG0546: predicted phosphatases; MCSG, structural	82.92
2fi1_A	190	Hydrolase, haloacid dehalogenase-like family; stru	82.91
2b0c_A	206	Putative phosphatase; alpha-D-glucose-1-phosphate,	82.71
1kzy_C	259	Tumor suppressor P53-binding protein 1; tandem-BRC	82.44
2go7_A	207	Hydrolase, haloacid dehalogenase-like family; stru	82.42
4ex6_A	237	ALNB; modified rossman fold, phosphatase, magnesiu	82.17
1z56_C	264	DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA	82.09
2hdo_A	209	Phosphoglycolate phosphatase; NP_784602.1, structu	81.64
1l7b_A	92	DNA ligase; BRCT, autostructure, structural genomi	81.48
3e58_A	214	Putative beta-phosphoglucomutase; structu genomics	81.46
3fvv_A	232	Uncharacterized protein; unknown function, structu	81.42
3ddh_A	234	Putative haloacid dehalogenase-like family hydrol;	81.32
2wf7_A	221	Beta-PGM, beta-phosphoglucomutase; transition stat	81.17
2pke_A	251	Haloacid delahogenase-like family hydrolase; NP_63	81.09
2hi0_A	240	Putative phosphoglycolate phosphatase; YP_619066.1	80.92
3cnh_A	200	Hydrolase family protein; NP_295428.1, predicted h	80.88
1te2_A	226	Putative phosphatase; structural genomics, phospha	80.75
2pib_A	216	Phosphorylated carbohydrates phosphatase TM_1254;	80.73
3mc1_A	226	Predicted phosphatase, HAD family; PSI2, NYSGXRC,	80.65
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	80.54
3pc7_A	88	DNA ligase 3; DNA repair, BRCT domain, protein:pro	80.51
3kd3_A	219	Phosphoserine phosphohydrolase-like protein; csgid	80.32
1zrn_A	232	L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseud	80.32
2fdr_A	229	Conserved hypothetical protein; SAD, structural ge	80.22
1nnl_A	225	L-3-phosphoserine phosphatase; PSP, HPSP, phospho-	80.16

>3ef1_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, BEF3, acylphosphate analog, cobalt, magnesium; HET: BFD; 2.15A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.3e-59  Score=458.27  Aligned_cols=269  Identities=25%  Similarity=0.417  Sum_probs=218.9

Q ss_pred             cceecCccc--------------cCceEEEEeCCCceeeecccCCCCccchhhhccccccccce--eec-------cceE
Q 040058           57 RGLRYSEQE--------------ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSL--FQM-------ANDK  113 (326)
Q Consensus        57 ~~l~~s~~~--------------~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l--~~~-------~~~~  113 (326)
                      +||+||+++              .+|++||||||||||||+..|..++|..+...+......++  |.+       ..+|
T Consensus         1 ~~l~vs~~~a~~~~~~~~~rll~~~Kl~LVLDLDeTLiHs~~~~~~~~~~~~~~~~~~~~~~dv~~F~l~~~~~~~~~~~   80 (442)
T 3ef1_A            1 SDLTVSLEEASRLESENVKRLRQEKRLSLIVXLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCY   80 (442)
T ss_dssp             CTTHHHHHHHHHHHHHHHHHHHHTTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEE
T ss_pred             CCceecHHHHHHHHHHHHHHHHhcCCeEEEEeeccceeccccccccchhccCCCCcchhhhccccceeeeeccCCceeEE
Confidence            477888776              89999999999999999988754322211111100000122  211       1289


Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCC-CCCCCcEEEEeC
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLV-RGQERGIVILDD  192 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l-~~~~~~vvIvDD  192 (326)
                      ||++|||+++||+.++++|||+|||+|++.||++|++.|||++.||++|+|||++|+..++|||+++ ++++++||||||
T Consensus        81 ~V~~RPgl~eFL~~ls~~yEivIfTas~~~YA~~Vl~~LDp~~~~f~~Rl~sRd~cg~~~~KdL~~ll~rdl~~vvIIDd  160 (442)
T 3ef1_A           81 YIKFRPGLAQFLQKISELYELHIYTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDD  160 (442)
T ss_dssp             EEEECTTHHHHHHHHTTTEEEEEECSSCHHHHHHHHHHHCTTSTTTTTCEECTTTSSCSSCCCGGGTCSSCCTTEEEEES
T ss_pred             EEEeCCCHHHHHHHHhCCcEEEEEcCCCHHHHHHHHHHhccCCccccceEEEecCCCCceeeehHHhcCCCcceEEEEEC
Confidence            9999999999999999999999999999999999999999999999999999999988899999965 899999999999


Q ss_pred             CchhhccCCCCeEEeCccccccccc-cCCC----CC------Cc-c---------------------c----c-------
Q 040058          193 TESVWSDHTENLIVLGKYVYFRDKE-LNGD----HK------SY-S---------------------E----T-------  228 (326)
Q Consensus       193 ~~~vw~~~~~N~I~I~~y~~f~~~~-~~~~----~~------s~-~---------------------e----~-------  228 (326)
                      ++.+|..|+ |+|+|.||+||.+.| +|.+    .+      .+ .                     .    .       
T Consensus       161 ~p~~~~~~p-N~I~I~~~~fF~~~gD~n~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (442)
T 3ef1_A          161 RGDVWDWNP-NLIKVVPYEFFVGIGDINSNFLAKSTPLPEQEQLIPLEIPKDEPDSVDEINEENEETPEYDSSNSSYAQD  239 (442)
T ss_dssp             CSGGGTTCT-TEEECCCCCCSTTCCCSCC---------------------------------------------------
T ss_pred             CHHHhCCCC-CEEEcCCccccCCCCcccccccccccccccccccccccccccccccccccccccccCccccccccccccc
Confidence            999999986 999999999999987 5431    00      00 0                     0    0       


Q ss_pred             ------------------------------------------------ccC----------CCccHHHHHHHHHHHHHHH
Q 040058          229 ------------------------------------------------LTD----------ESENEEALANVLRVLKTIH  250 (326)
Q Consensus       229 ------------------------------------------------~~d----------~~~~D~~L~~l~~~L~~ih  250 (326)
                                                                      ..|          ..++|++|..|.++|++||
T Consensus       240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~rpl~~~q~~l~~~~~~~~~~~~~l~d~D~~L~~l~~~L~~iH  319 (442)
T 3ef1_A          240 SSTIPEKTLLKDTFLQNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIH  319 (442)
T ss_dssp             -------------------CHHHHHHHHHHHHHHHHHHCHHHHHHHHHHTSCCSCHHHHCSCCCCCCHHHHHHHHHHHHH
T ss_pred             ccccchhhhhccccCccchhhHHHHHHhhhhhhhhhccCchhhHHHHhhhhhhccccccccccCCcHHHHHHHHHHHHHH
Confidence                                                            000          0246899999999999999


Q ss_pred             HHhcCCC-----------CCcHHHHHHHHhccC-CCcEEEEcCccch-------HHHHHHH-------------------
Q 040058          251 RLFFDSV-----------CGDVRTYLPKVRSEF-SRDVLYFSAIFRD-------CLWAEQE-------------------  292 (326)
Q Consensus       251 ~~ff~~~-----------~~DVr~il~~~r~~v-~g~~ivfs~~~p~-------~~~~~ae-------------------  292 (326)
                      +.||+..           .+||+.||+++|+++ +||+|+|||++|.       .+|++++                   
T Consensus       320 ~~fy~~~d~~~~~~~~~~~~Dv~~il~~~k~~~L~G~~IvfSG~~p~~~~~~r~~l~~~~~~lGa~~~~~vs~~vTHLVa  399 (442)
T 3ef1_A          320 AVYYEEENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIA  399 (442)
T ss_dssp             HHHHHHHHTCCSCCSSSCCCCHHHHHHHHHHTTSTTCEEEEESSSCTTSCSTTSHHHHHHHTTTCEECSSSSSCCSEEEE
T ss_pred             HHHHHHhhhcccccccCCCCcHHHHHHHHhhcccCCcEEEEecccCCCCCccHHHHHHHHHHcCCEEeCCCCCCceEEEe
Confidence            9999771           379999999999999 9999999999986       6999998                   


Q ss_pred             -------HHHhhhC-CceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          293 -------EKFLVQE-KKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       293 -------a~~a~~~-~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                             .++|++. |++||+|.||++|+..|+|+||+.|+.
T Consensus       400 ~~~~t~K~~~A~~~g~IkIVs~~WL~dcl~~~krldE~~YlL  441 (442)
T 3ef1_A          400 AKIRTEKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL  441 (442)
T ss_dssp             CSCCCHHHHHHHHHSSSEEEEHHHHHHHHHHTSCCCGGGTBC
T ss_pred             CCCCCHHHHHHHhcCCCEEEeHHHHHHHHHcCCcCChhcccc
Confidence                   3578776 599999999999999999999999973

>3ef0_A RNA polymerase II subunit A C-terminal domain phosphatase; CTD, FCPH, BRCT, hydrolase, ALF4, transition state analog, cobalt, magnesium; 2.10A {Schizosaccharomyces pombe}

Probab=100.00  E-value=1.2e-56  Score=437.05  Aligned_cols=260  Identities=25%  Similarity=0.431  Sum_probs=213.5

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccce--eec-------cceEEEEeCccHHHHHHHhhcCceEEE
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSL--FQM-------ANDKLVKLRPFVRTFLEQASSLVDIYL  136 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l--~~~-------~~~~~vklRPgl~eFL~~ls~~yEl~I  136 (326)
                      .+|++||||||||||||+..|..+.|..+..........++  |.+       ...+||++|||+++||+.++++|||+|
T Consensus        16 ~~k~~LVlDLD~TLvhS~~~~~~~~w~~~~~~~~~~~~~dv~~f~~~~~~~~~~~~~~v~~RPg~~eFL~~l~~~yeivI   95 (372)
T 3ef0_A           16 EKRLSLIVDLDQTIIHATVDPTVGEWMSDPGNVNYDVLRDVRSFNLQEGPSGYTSCYYIKFRPGLAQFLQKISELYELHI   95 (372)
T ss_dssp             HTCEEEEECCBTTTEEEECCTHHHHHHTCTTSTTTGGGTTCEEEEEEETTTTEEEEEEEEECTTHHHHHHHHHTTEEEEE
T ss_pred             CCCCEEEEcCCCCcccccCcCccchhhccCCCCchhhhhhhhceeeeeccCCceEEEEEEECcCHHHHHHHHhcCcEEEE
Confidence            79999999999999999877643222211111110011122  111       128999999999999999999999999


Q ss_pred             EcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCC-CCCCCcEEEEeCCchhhccCCCCeEEeCccccccc
Q 040058          137 CTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLV-RGQERGIVILDDTESVWSDHTENLIVLGKYVYFRD  215 (326)
Q Consensus       137 yT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l-~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~  215 (326)
                      ||++++.||++|++.|||++.||++|++||++|+..++|||+++ ++++++||||||++.+|..|+ |+|+|+||+||++
T Consensus        96 ~Tas~~~yA~~vl~~LDp~~~~f~~ri~sr~~~g~~~~KdL~~L~~~dl~~viiiDd~~~~~~~~p-N~I~i~~~~~f~~  174 (372)
T 3ef0_A           96 YTMGTKAYAKEVAKIIDPTGKLFQDRVLSRDDSGSLAQKSLRRLFPCDTSMVVVIDDRGDVWDWNP-NLIKVVPYEFFVG  174 (372)
T ss_dssp             ECSSCHHHHHHHHHHHCTTSCSSSSCEECTTTSSCSSCCCGGGTCSSCCTTEEEEESCSGGGTTCT-TEEECCCCCCSTT
T ss_pred             EeCCcHHHHHHHHHHhccCCceeeeEEEEecCCCCcceecHHHhcCCCCceEEEEeCCHHHcCCCC-cEeeeCCccccCC
Confidence            99999999999999999999999999999999988899999976 999999999999999999986 9999999999999


Q ss_pred             cc-cCCCC-----CCcccc------------------------ccC----------CCccHHHHHHHHHHHHHHHHHhcC
Q 040058          216 KE-LNGDH-----KSYSET------------------------LTD----------ESENEEALANVLRVLKTIHRLFFD  255 (326)
Q Consensus       216 ~~-~~~~~-----~s~~e~------------------------~~d----------~~~~D~~L~~l~~~L~~ih~~ff~  255 (326)
                      .| +|.+.     .++.+.                        ..|          ..++|++|..++++|++||++||+
T Consensus       175 ~~d~n~~~lp~~~~~~~~~~~~~~~~~~~q~~~~p~~~~q~~l~~~e~~~~~~~~~~~d~D~~L~~~~~~L~~iH~~Ff~  254 (372)
T 3ef0_A          175 IGDINSNFLSGNREALEEQNKERVTALELQKSERPLAKQQNALLEDEGKPTPSHTLLHNRDHELERLEKVLKDIHAVYYE  254 (372)
T ss_dssp             CCCTTC--------CCGGGGHHHHHHHHHHHHHCHHHHHHHHHHHSCCSCSGGGCSCCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred             cCccccccccccchhHHHhhhhhhhhhhhhhcccchhHHHHhhhccccccchhhccccCChHHHHHHHHHHHHHHHHHHH
Confidence            87 55320     111110                        001          135799999999999999999998


Q ss_pred             C-----------CCCcHHHHHHHHhccC-CCcEEEEcCccch-------HHHHHHH------------------------
Q 040058          256 S-----------VCGDVRTYLPKVRSEF-SRDVLYFSAIFRD-------CLWAEQE------------------------  292 (326)
Q Consensus       256 ~-----------~~~DVr~il~~~r~~v-~g~~ivfs~~~p~-------~~~~~ae------------------------  292 (326)
                      .           ..+||+.+|+++|+++ +||+|+|||++|.       .+|++++                        
T Consensus       255 ~~~~~~~~~~~~~~~dv~~ii~~lk~~~L~G~~ivfSG~~~~~~~~~~~~l~~l~~~lGa~v~~~vs~~vTHLVa~~~~t  334 (372)
T 3ef0_A          255 EENDISSRSGNHKHANVGLIIPKMKQKVLKGCRLLFSGVIPLGVDVLSSDIAKWAMSFGAEVVLDFSVPPTHLIAAKIRT  334 (372)
T ss_dssp             HHHHHHHHTTTSSCCCHHHHHHHHHTTTSTTCEEEEESSSCTTSCTTTSHHHHHHHHTTCEEESSSSSCCSEEEECSCCC
T ss_pred             HHhhhcccccccccccHHHHHHHHHhhhcCCcEEEEecccCCCcchhHHHHHHHHHHcCCEEeCcCCCCceEEEEcCCCc
Confidence            7           2389999999999999 9999999999974       7899988                        


Q ss_pred             --HHHhhhC-CceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          293 --EKFLVQE-KKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       293 --a~~a~~~-~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                        .++|++. |++||+|.||++|+..|+|+||+.|+.
T Consensus       335 ~K~~~A~~~~~I~IV~~~Wl~~c~~~~~~vdE~~Y~l  371 (372)
T 3ef0_A          335 EKVKKAVSMGNIKVVKLNWLTESLSQWKRLPESDYLL  371 (372)
T ss_dssp             HHHHHHHHSSSCCEEEHHHHHHHHHTTSCCCGGGGBC
T ss_pred             hHHHHHHhcCCCEEEcHHHHHHHHHhCCcCChhhcee
Confidence              3578887 799999999999999999999999973

>3qle_A TIM50P; chaperone, mitochondrion, preprotein translocation; HET: 1PE; 1.83A {Saccharomyces cerevisiae EC1118}

Probab=100.00  E-value=8.7e-39  Score=287.75  Aligned_cols=156  Identities=21%  Similarity=0.294  Sum_probs=140.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      ++|++|||||||||||++..+.                       .++++++|||+++||+.+++.|||+|||+|++.||
T Consensus        32 ~~~~tLVLDLDeTLvh~~~~~~-----------------------~~~~v~~RPgl~eFL~~l~~~yeivI~Tas~~~ya   88 (204)
T 3qle_A           32 QRPLTLVITLEDFLVHSEWSQK-----------------------HGWRTAKRPGADYFLGYLSQYYEIVLFSSNYMMYS   88 (204)
T ss_dssp             CCSEEEEEECBTTTEEEEEETT-----------------------TEEEEEECTTHHHHHHHHTTTEEEEEECSSCHHHH
T ss_pred             CCCeEEEEeccccEEeeecccc-----------------------CceeEEeCCCHHHHHHHHHhCCEEEEEcCCcHHHH
Confidence            8899999999999999986431                       15689999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCCC
Q 040058          146 EAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDH  222 (326)
Q Consensus       146 ~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~~  222 (326)
                      ++|++.|||.+.+|++|++ |++|.   +.++|||+++++++++||||||++.+|..|++|+|+|.||.           
T Consensus        89 ~~vl~~LDp~~~~f~~rl~-R~~c~~~~g~y~KdL~~Lgrdl~~vIiIDDsp~~~~~~p~N~I~I~~~~-----------  156 (204)
T 3qle_A           89 DKIAEKLDPIHAFVSYNLF-KEHCVYKDGVHIKDLSKLNRDLSKVIIIDTDPNSYKLQPENAIPMEPWN-----------  156 (204)
T ss_dssp             HHHHHHTSTTCSSEEEEEC-GGGSEEETTEEECCGGGSCSCGGGEEEEESCTTTTTTCGGGEEECCCCC-----------
T ss_pred             HHHHHHhCCCCCeEEEEEE-ecceeEECCeeeecHHHhCCChHHEEEEECCHHHHhhCccCceEeeeEC-----------
Confidence            9999999999889998765 99986   35899999999999999999999999999999999999997           


Q ss_pred             CCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHHHhc
Q 040058          223 KSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPKVRS  270 (326)
Q Consensus       223 ~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~~r~  270 (326)
                                ++.|++|..|+++|+.|+..    ...|||++|+++++
T Consensus       157 ----------~~~D~eL~~L~~~L~~L~~~----~~~DVR~~L~~~~~  190 (204)
T 3qle_A          157 ----------GEADDKLVRLIPFLEYLATQ----QTKDVRPILNSFED  190 (204)
T ss_dssp             ----------SSCCCHHHHHHHHHHHHHHT----CCSCSHHHHTTSSC
T ss_pred             ----------CCCChhHHHHHHHHHHHhhc----ChHHHHHHHHHhcC
Confidence                      12355899999999999864    36899999998875

>2ght_A Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1; protein-peptide complex, HAD superfamily, hydrolase; HET: SEP; 1.80A {Homo sapiens} PDB: 2ghq_A* 3pgl_A* 1t9z_A* 1ta0_A* 3l0c_A 3l0y_A 3l0b_A* 2q5e_A

Probab=100.00  E-value=5.8e-35  Score=257.68  Aligned_cols=167  Identities=25%  Similarity=0.376  Sum_probs=139.1

Q ss_pred             ccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHH
Q 040058           65 EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCY  144 (326)
Q Consensus        65 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~Y  144 (326)
                      ..+|++||||||||||||+..+.. .+  .+..++.     +......+++++|||+++||+++++.|+++|||++.+.|
T Consensus        12 ~~~k~~LVLDLD~TLvhs~~~~~~-~~--d~~~~~~-----~~~~~~~~~v~~rPg~~efL~~l~~~~~i~I~T~~~~~~   83 (181)
T 2ght_A           12 DSDKICVVINLDETLVHSSFKPVN-NA--DFIIPVE-----IDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASLAKY   83 (181)
T ss_dssp             GTTSCEEEECCBTTTEEEESSCCS-SC--SEEEEEE-----ETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSCHHH
T ss_pred             cCCCeEEEECCCCCeECCcccCCC-Cc--cceeeee-----eCCeeEEEEEEeCCCHHHHHHHHHhCCCEEEEcCCCHHH
Confidence            378999999999999999876531 11  1100000     000011678999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCCC
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGD  221 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~~  221 (326)
                      |+++++.|||.+ +|..|++ |++|.   +.+.|+|++++++++++|||||++..|..+++|+|+|.+|.          
T Consensus        84 a~~vl~~ld~~~-~f~~~~~-rd~~~~~k~~~~k~L~~Lg~~~~~~vivdDs~~~~~~~~~ngi~i~~~~----------  151 (181)
T 2ght_A           84 ADPVADLLDKWG-AFRARLF-RESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWF----------  151 (181)
T ss_dssp             HHHHHHHHCTTC-CEEEEEC-GGGSEEETTEEECCGGGTCSCGGGEEEECSCGGGGTTCTTSBCCCCCCS----------
T ss_pred             HHHHHHHHCCCC-cEEEEEe-ccCceecCCcEeccHHHhCCCcceEEEEeCCHHHhccCcCCEeEecccc----------
Confidence            999999999996 8987655 99885   35899999999999999999999999999999999999997          


Q ss_pred             CCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 040058          222 HKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPK  267 (326)
Q Consensus       222 ~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~  267 (326)
                                ++.+|++|..|+++|+.|+.      ..|||++|++
T Consensus       152 ----------~~~~D~eL~~l~~~L~~l~~------~~DVr~~l~~  181 (181)
T 2ght_A          152 ----------DNMSDTELHDLLPFFEQLSR------VDDVYSVLRQ  181 (181)
T ss_dssp             ----------SCTTCCHHHHHHHHHHHHTT------CSCTHHHHCC
T ss_pred             ----------CCCChHHHHHHHHHHHHhCc------CccHHHHhhC
Confidence                      25678999999999999996      4999999863

>3shq_A UBLCP1; phosphatase, hydrolase; 1.96A {Drosophila melanogaster}

Probab=99.98  E-value=1.2e-33  Score=270.12  Aligned_cols=156  Identities=19%  Similarity=0.289  Sum_probs=134.2

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYA  145 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA  145 (326)
                      ++|++|||||||||||+.....                        ..++.+|||+++||+.++++|||+|||++.+.||
T Consensus       138 ~~k~tLVLDLDeTLvh~~~~~~------------------------~~~~~~RP~l~eFL~~l~~~yeivIfTas~~~ya  193 (320)
T 3shq_A          138 EGKKLLVLDIDYTLFDHRSPAE------------------------TGTELMRPYLHEFLTSAYEDYDIVIWSATSMRWI  193 (320)
T ss_dssp             TTCEEEEECCBTTTBCSSSCCS------------------------SHHHHBCTTHHHHHHHHHHHEEEEEECSSCHHHH
T ss_pred             CCCcEEEEeccccEEcccccCC------------------------CcceEeCCCHHHHHHHHHhCCEEEEEcCCcHHHH
Confidence            7899999999999999974221                        1245899999999999999999999999999999


Q ss_pred             HHHHHHhCCCCcc-ccceEEeecCCC---------C-CccccCCCC-----CCCCCcEEEEeCCchhhccCCCCeEEeCc
Q 040058          146 EAAVKLLDLDSKY-FSSRIIAREDFN---------G-KDRKNPDLV-----RGQERGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       146 ~~v~~~LDP~~~~-F~~Ri~sRd~~~---------~-~~~KdL~~l-----~~~~~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      ++|++.|||.+.+ |.+|++ |++|.         + .++|||+++     ++++++||||||++.+|..|++|+|+|.|
T Consensus       194 ~~vld~Ld~~~~~~~~~~~~-r~~~~~~~~~~~~~g~~~vKdLs~Lw~~~p~rdl~~tIiIDdsp~~~~~~p~NgI~I~~  272 (320)
T 3shq_A          194 EEKMRLLGVASNDNYKVMFY-LDSTAMISVHVPERGVVDVKPLGVIWALYKQYNSSNTIMFDDIRRNFLMNPKSGLKIRP  272 (320)
T ss_dssp             HHHHHHTTCTTCSSCCCCEE-ECGGGCEEEEETTTEEEEECCHHHHHHHCTTCCGGGEEEEESCGGGGTTSGGGEEECCC
T ss_pred             HHHHHHhCCCCCcceeEEEE-EcCCccccccccCCCCEEEEEhHHhhcccCCCChhHEEEEeCChHHhccCcCceEEeCe
Confidence            9999999999875 778887 77764         2 479999999     89999999999999999999999999999


Q ss_pred             cccccccccCCCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 040058          210 YVYFRDKELNGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPK  267 (326)
Q Consensus       210 y~~f~~~~~~~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~  267 (326)
                      |.....                ++.+|++|..|+++|+.|+..     ..|||+++++
T Consensus       273 ~~~~~~----------------~~~~D~eL~~L~~~L~~L~~~-----~~DVr~~~~~  309 (320)
T 3shq_A          273 FRQAHL----------------NRGTDTELLKLSDYLRKIAHH-----CPDFNSLNHR  309 (320)
T ss_dssp             CCCHHH----------------HTTTCCHHHHHHHHHHHHHHH-----CSCGGGCCGG
T ss_pred             EcCCCC----------------CCCccHHHHHHHHHHHHHhcc-----CcchhHHHHH
Confidence            972100                136799999999999999931     4899999865

>2hhl_A CTD small phosphatase-like protein; CTD phosphatase, keggins anion, structural genomics, PSI, protein structure initiative; HET: KEG; 2.10A {Homo sapiens}

Probab=99.97  E-value=1.3e-31  Score=239.17  Aligned_cols=157  Identities=22%  Similarity=0.335  Sum_probs=130.9

Q ss_pred             ccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeecc-ceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058           65 EERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMA-NDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC  143 (326)
Q Consensus        65 ~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~-~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~  143 (326)
                      ..+|++||||||||||||+..+.. .++  +..++.      +... ..+++++|||+++||+++++.|+|+|||++.+.
T Consensus        25 ~~~k~~LVLDLD~TLvhs~~~~~~-~~d--~~~~~~------~~g~~~~~~v~~RPgv~efL~~l~~~~~i~I~Tss~~~   95 (195)
T 2hhl_A           25 DYGKKCVVIDLDETLVHSSFKPIS-NAD--FIVPVE------IDGTIHQVYVLKRPHVDEFLQRMGQLFECVLFTASLAK   95 (195)
T ss_dssp             GTTCCEEEECCBTTTEEEESSCCT-TCS--EEEEEE------ETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSCHH
T ss_pred             cCCCeEEEEccccceEcccccCCC-Ccc--ceeeee------cCCceeeEEEEeCcCHHHHHHHHHcCCeEEEEcCCCHH
Confidence            378999999999999999876531 111  100000      0011 168899999999999999999999999999999


Q ss_pred             HHHHHHHHhCCCCccccceEEeecCCC---CCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCccccccccccCC
Q 040058          144 YAEAAVKLLDLDSKYFSSRIIAREDFN---GKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNG  220 (326)
Q Consensus       144 YA~~v~~~LDP~~~~F~~Ri~sRd~~~---~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~~~  220 (326)
                      ||+++++.|||.+ +|..| ++|++|.   ..+.|+|++++++++++|||||++..|..++.|+|+|.+|.         
T Consensus        96 ~a~~vl~~ld~~~-~f~~~-l~rd~~~~~k~~~lK~L~~Lg~~~~~~vivDDs~~~~~~~~~ngi~i~~~~---------  164 (195)
T 2hhl_A           96 YADPVADLLDRWG-VFRAR-LFRESCVFHRGNYVKDLSRLGRELSKVIIVDNSPASYIFHPENAVPVQSWF---------  164 (195)
T ss_dssp             HHHHHHHHHCCSS-CEEEE-ECGGGCEEETTEEECCGGGSSSCGGGEEEEESCGGGGTTCGGGEEECCCCS---------
T ss_pred             HHHHHHHHhCCcc-cEEEE-EEcccceecCCceeeeHhHhCCChhHEEEEECCHHHhhhCccCccEEeeec---------
Confidence            9999999999996 89875 5599886   35899999999999999999999999999999999999997         


Q ss_pred             CCCCccccccCCCccHHHHHHHHHHHHHHHHH
Q 040058          221 DHKSYSETLTDESENEEALANVLRVLKTIHRL  252 (326)
Q Consensus       221 ~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~  252 (326)
                                 ++.+|++|..|+++|+.|+..
T Consensus       165 -----------~~~~D~eL~~L~~~L~~l~~~  185 (195)
T 2hhl_A          165 -----------DDMTDTELLDLIPFFEGLSRE  185 (195)
T ss_dssp             -----------SCTTCCHHHHHHHHHHHHHC-
T ss_pred             -----------CCCChHHHHHHHHHHHHHHhC
Confidence                       257799999999999999864

>2cou_A ECT2 protein; BRCT domain, RHO GTPase, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=98.55  E-value=2.5e-08  Score=80.39  Aligned_cols=59  Identities=20%  Similarity=0.195  Sum_probs=49.6

Q ss_pred             HhccC-CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhc
Q 040058          268 VRSEF-SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWR  317 (326)
Q Consensus       268 ~r~~v-~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~  317 (326)
                      +|-.+ +||.|+|||+-+.   .++++.+                          .+.|++.+++||+|.||++|+..++
T Consensus         8 ~~~~~F~g~~i~~sg~~~~~r~~l~~~i~~~GG~~~~~~~~~~THLV~~~~~~~K~~~a~~~~i~IV~~~Wl~dsi~~g~   87 (109)
T 2cou_A            8 FKVPPFQDCILSFLGFSDEEKHSMEEMTEMQGGSYLPVGDERCTHLIVEENTVKDLPFEPSKKLFVVKQEWFWGSIQMDA   87 (109)
T ss_dssp             SCCCTTTTCBEEEESSCHHHHHHHHHHHHHHTCBCCCTTCTTCSEEEECTTTCSSCSSCCCTTSEEECHHHHHHHHHTTS
T ss_pred             ccCCcCCCeEEEecCCCHHHHHHHHHHHHHcCCEEecccCCCccEEEEeCCccHHHHHHHHCCCeEecHHHHHHHHHcCC
Confidence            46678 9999999996554   7888877                          1356678999999999999999999


Q ss_pred             CCCCCCCCC
Q 040058          318 RRPEDDYLP  326 (326)
Q Consensus       318 r~~E~~f~~  326 (326)
                      |.||+.|++
T Consensus        88 ~ldE~~Y~~   96 (109)
T 2cou_A           88 RAGETMYLY   96 (109)
T ss_dssp             CCCGGGTBC
T ss_pred             cCChhccCC
Confidence            999999975

>3l46_A Protein ECT2; alternative splicing, guanine-nucleotide releasing factor, phosphoprotein, polymorphism, proto-oncogene, structural genomics; 1.48A {Homo sapiens}

Probab=98.40  E-value=1.2e-07  Score=76.95  Aligned_cols=67  Identities=19%  Similarity=0.117  Sum_probs=49.3

Q ss_pred             cHHHHHHHHhccC-CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHH
Q 040058          260 DVRTYLPKVRSEF-SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWI  309 (326)
Q Consensus       260 DVr~il~~~r~~v-~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl  309 (326)
                      .=|+-+.++|-.+ +||.|.|||+.+.   .++++.+                          .+.|++.|++||+|+||
T Consensus         9 ~~~~~~~~~~~p~F~g~~Ic~sGf~~~er~~l~~~i~~~GG~~~~~l~~~cTHLV~~~~~~~K~~~A~~~~i~IVs~eWl   88 (112)
T 3l46_A            9 SGRENLYFQGVPPFQDCILSFLGFSDEEKTNMEEMTEMQGGKYLPLGDERCTHLVVEENIVKDLPFEPSKKLYVVKQEWF   88 (112)
T ss_dssp             ---------CCCTTTTCEECEESCCHHHHHHHHHHHHHTTCEECCTTCTTCSEEEECTTTBSSCSSCCCSSCEEEEHHHH
T ss_pred             cccccccccCCCccCCeEEEEeCCCHHHHHHHHHHHHHcCCEECcccCCCceEEEecCCchhhHHHHHHCCeeEecHHHH
Confidence            3466677788889 9999999996554   6777776                          12466789999999999


Q ss_pred             HHHHHHhcCCCCCCCCC
Q 040058          310 DAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       310 ~~~~~~w~r~~E~~f~~  326 (326)
                      ++|+.+..|.||+.|..
T Consensus        89 ~dsi~~g~~ldE~~Y~~  105 (112)
T 3l46_A           89 WGSIQMDARAGETMYLY  105 (112)
T ss_dssp             HHHHHHTSCCCGGGSBC
T ss_pred             HHHHHcCCccChhhcee
Confidence            99999999999999963

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=98.40  E-value=3.3e-07  Score=78.96  Aligned_cols=133  Identities=20%  Similarity=0.119  Sum_probs=82.0

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-HHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-RCY  144 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-~~Y  144 (326)
                      ....+++||||||+.........+.   +....   ...++.. ..-.+.+.||+.++|+.+.+. +.++|.|++. +.+
T Consensus        26 ~~k~vifDlDGTL~~~~~~~~~~~~---~~~~~---~~~~~~~-~~~~~~~~~g~~e~L~~L~~~G~~v~ivT~~~~~~~   98 (187)
T 2wm8_A           26 LPKLAVFDLDYTLWPFWVDTHVDPP---FHKSS---DGTVRDR-RGQDVRLYPEVPEVLKRLQSLGVPGAAASRTSEIEG   98 (187)
T ss_dssp             SCSEEEECSBTTTBSSCTTTSSCSC---CEECT---TSCEECT-TCCEECCCTTHHHHHHHHHHHTCCEEEEECCSCHHH
T ss_pred             ccCEEEEcCCCCcchHHHhhccCcc---hhhhc---ccchhhc-cCcccCcchhHHHHHHHHHHCCceEEEEeCCCChHH
Confidence            4568999999999754322211110   00000   0011110 022357899999999999876 9999999999 799


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +..+++.++.. .+|..-+.+...-...+.+-++.++.+++.+++|+|++.-.......++.+
T Consensus        99 ~~~~l~~~gl~-~~f~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~igD~~~Di~~a~~aG~~~  160 (187)
T 2wm8_A           99 ANQLLELFDLF-RYFVHREIYPGSKITHFERLQQKTGIPFSQMIFFDDERRNIVDVSKLGVTC  160 (187)
T ss_dssp             HHHHHHHTTCT-TTEEEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEE
T ss_pred             HHHHHHHcCcH-hhcceeEEEeCchHHHHHHHHHHcCCChHHEEEEeCCccChHHHHHcCCEE
Confidence            99999999887 567642232111011233445566778899999999975443223445543

>2fpr_A Histidine biosynthesis bifunctional protein HISB; histidinola phosphate phosphatase, bifunctional enzyme structural genomics; 1.70A {Escherichia coli} SCOP: c.108.1.19 PDB: 2fps_A 2fpu_A* 2fpx_A 2fpw_A*

Probab=98.33  E-value=1e-06  Score=75.68  Aligned_cols=109  Identities=10%  Similarity=0.081  Sum_probs=73.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC----
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS----  140 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g----  140 (326)
                      ..-.++++|+|+||+......       +.....             -.+.+.||+.++|+.+.+. |.+.|.|++    
T Consensus        12 ~~~k~~~~D~Dgtl~~~~~~~-------~~~~~~-------------~~~~~~pg~~e~L~~L~~~G~~l~i~Tn~~~~~   71 (176)
T 2fpr_A           12 SSQKYLFIDRDGTLISEPPSD-------FQVDRF-------------DKLAFEPGVIPQLLKLQKAGYKLVMITNQDGLG   71 (176)
T ss_dssp             -CCEEEEECSBTTTBCCC--C-------CCCCSG-------------GGCCBCTTHHHHHHHHHHTTEEEEEEEECTTTT
T ss_pred             CcCcEEEEeCCCCeEcCCCCC-------cCcCCH-------------HHCcCCccHHHHHHHHHHCCCEEEEEECCcccc
Confidence            566889999999999875210       000000             0136899999999999876 999999999    


Q ss_pred             -----------cHHHHHHHHHHhCCCCccccceEEe----ecCCCC------CccccCCCCCCCCCcEEEEeCCchhh
Q 040058          141 -----------TRCYAEAAVKLLDLDSKYFSSRIIA----REDFNG------KDRKNPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       141 -----------~~~YA~~v~~~LDP~~~~F~~Ri~s----Rd~~~~------~~~KdL~~l~~~~~~vvIvDD~~~vw  197 (326)
                                 .+.++..+++.++..   |..-++|    .++...      .+.+-++.++.+++.+++|+|++.-.
T Consensus        72 ~~~~~~~~~~~~~~~~~~~l~~~gl~---fd~v~~s~~~~~~~~~~~KP~p~~~~~~~~~~gi~~~~~l~VGD~~~Di  146 (176)
T 2fpr_A           72 TQSFPQADFDGPHNLMMQIFTSQGVQ---FDEVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRATDI  146 (176)
T ss_dssp             BTTBCHHHHHHHHHHHHHHHHHTTCC---EEEEEEECCCGGGCCSSSTTSCGGGGGGC----CCGGGCEEEESSHHHH
T ss_pred             ccccchHhhhhhHHHHHHHHHHcCCC---eeEEEEcCCCCcccccccCCCHHHHHHHHHHcCCCHHHEEEEcCCHHHH
Confidence                       688999999988765   7643345    244332      24455677788889999999998433

>3pa6_A Microcephalin; BRCT domain, cell cycle; HET: MSE; 1.50A {Homo sapiens} PDB: 3ktf_A* 2wt8_A*

Probab=98.31  E-value=6e-07  Score=72.26  Aligned_cols=33  Identities=12%  Similarity=0.038  Sum_probs=30.0

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      +.|++.|++||+|.||.+|...|+|.||+.|++
T Consensus        63 ~~A~~~~i~iV~~~Wv~~C~~~~~~vdE~~Y~i   95 (107)
T 3pa6_A           63 DKAQKRGVKLVSVLWVEKCRTAGAHIDESLFPA   95 (107)
T ss_dssp             HHHHHHTCEEECHHHHHHHHHHTSCCCGGGSBC
T ss_pred             HHHhcCCCEEECHHHHHHHHHhCccCChhcccC
Confidence            457777899999999999999999999999974

>3kbb_A Phosphorylated carbohydrates phosphatase TM_1254; hydrolase, arbohydrate metabolism, COBA magnesium, manganese, metal-binding, nickel; HET: MSE GOL; 1.74A {Thermotoga maritima MSB8}

Probab=98.30  E-value=1.6e-07  Score=81.53  Aligned_cols=82  Identities=24%  Similarity=0.287  Sum_probs=67.0

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .++..||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|.. +++.++.+.      .+.+-+++++.+++.
T Consensus        82 ~~~~~pg~~~~l~~L~~~g~~~~i~tn~~~~~~~~~l~~~~l~-~~fd~-~~~~~~~~~~KP~p~~~~~a~~~lg~~p~e  159 (216)
T 3kbb_A           82 LLKENPGVREALEFVKSKRIKLALATSTPQREALERLRRLDLE-KYFDV-MVFGDQVKNGKPDPEIYLLVLERLNVVPEK  159 (216)
T ss_dssp             HCCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSE-EECGGGSSSCTTSTHHHHHHHHHHTCCGGG
T ss_pred             hcccCccHHHHHHHHHHcCCCcccccCCcHHHHHHHHHhcCCC-ccccc-cccccccCCCcccHHHHHHHHHhhCCCccc
Confidence            357899999999999755 999999999999999999999987 68874 666666543      145557778889999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +|+|+|++.-.
T Consensus       160 ~l~VgDs~~Di  170 (216)
T 3kbb_A          160 VVVFEDSKSGV  170 (216)
T ss_dssp             EEEEECSHHHH
T ss_pred             eEEEecCHHHH
Confidence            99999998544

>2d8m_A DNA-repair protein XRCC1; parallel beta-sheet, DNA ligase III, poly(ADP-ribose) polymerase-1, DNA polymerase beta, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.28  E-value=5.6e-07  Score=74.45  Aligned_cols=57  Identities=18%  Similarity=0.190  Sum_probs=48.8

Q ss_pred             ccC-CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhcCC
Q 040058          270 SEF-SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWRRR  319 (326)
Q Consensus       270 ~~v-~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r~  319 (326)
                      ..+ +||.|+|||.++.   .|+++++                          .+.|++.|++||+|.||.+|+..|++.
T Consensus        20 ~~~f~g~~i~itG~~~~~r~~l~~~i~~~Gg~v~~~~s~~~ThLI~~~~~~~K~~~A~~~gi~IV~~~Wl~d~~~~~~~l   99 (129)
T 2d8m_A           20 GKILQGVVVVLSGFQNPFRSELRDKALELGAKYRPDWTRDSTHLICAFANTPKYSQVLGLGGRIVRKEWVLDCHRMRRRL   99 (129)
T ss_dssp             TTTSTTEEEEEESCCTTHHHHHHHHHHHTTEEEESSCCTTCCEEEESSSSCHHHHHHHHHTCEEEETHHHHHHHHTTSCC
T ss_pred             cccCCCeEEEEeCCCcHHHHHHHHHHHHcCCEEeCCcCCCCeEEEecCCCChHHHHHHHCCCcEecHHHHHHHHHhCCcC
Confidence            456 9999999999854   6778777                          246777899999999999999999999


Q ss_pred             CCCCCCC
Q 040058          320 PEDDYLP  326 (326)
Q Consensus       320 ~E~~f~~  326 (326)
                      ||+.|++
T Consensus       100 ~e~~Y~l  106 (129)
T 2d8m_A          100 PSQRYLM  106 (129)
T ss_dssp             CGGGGBC
T ss_pred             ChHhccc
Confidence            9999963

>3ib6_A Uncharacterized protein; structural genomics, unknown function, PSI-2, protein struct initiative; 2.20A {Listeria monocytogenes}

Probab=98.27  E-value=1.2e-06  Score=75.70  Aligned_cols=106  Identities=15%  Similarity=0.138  Sum_probs=76.0

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH---HH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR---CY  144 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~---~Y  144 (326)
                      .++++|+|+||+...... .  .+.+...              .-.+.+.||+.++|+.+.+. +.+.|.|++..   .+
T Consensus         4 k~vifD~DgtL~~~~~~~-y--~~~~~~~--------------~~~~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~   66 (189)
T 3ib6_A            4 THVIWDMGETLNTVPNTR-Y--DHHPLDT--------------YPEVVLRKNAKETLEKVKQLGFKQAILSNTATSDTEV   66 (189)
T ss_dssp             CEEEECTBTTTBCCCTTS-S--CSSCGGG--------------CTTCCBCTTHHHHHHHHHHTTCEEEEEECCSSCCHHH
T ss_pred             eEEEEcCCCceeeccchh-h--hhHHHhc--------------cCCceeCcCHHHHHHHHHHCCCEEEEEECCCccchHH
Confidence            478999999998843211 0  0000000              01146899999999999877 99999999987   99


Q ss_pred             HHHHHHHhCCCCccccceEEeecCC----CC------CccccCCCCCCCCCcEEEEeCC
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDF----NG------KDRKNPDLVRGQERGIVILDDT  193 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~----~~------~~~KdL~~l~~~~~~vvIvDD~  193 (326)
                      +..+++.++.. .+|. .+++.++.    ..      .+.+-+++++.+++.+++|+|+
T Consensus        67 ~~~~l~~~gl~-~~fd-~i~~~~~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l~VGD~  123 (189)
T 3ib6_A           67 IKRVLTNFGII-DYFD-FIYASNSELQPGKMEKPDKTIFDFTLNALQIDKTEAVMVGNT  123 (189)
T ss_dssp             HHHHHHHTTCG-GGEE-EEEECCTTSSTTCCCTTSHHHHHHHHHHHTCCGGGEEEEESB
T ss_pred             HHHHHHhcCch-hheE-EEEEccccccccCCCCcCHHHHHHHHHHcCCCcccEEEECCC
Confidence            99999999887 5787 47766654    11      1334455677889999999999

>3m9l_A Hydrolase, haloacid dehalogenase-like family; HAD family hydrolase, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Pseudomonas fluorescens} PDB: 2ybd_A* 3r09_A*

Probab=98.24  E-value=1.8e-06  Score=74.29  Aligned_cols=85  Identities=12%  Similarity=0.117  Sum_probs=66.3

Q ss_pred             eEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCcccc-ceEEeecCCCC-----CccccCCCCCCCC
Q 040058          112 DKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFS-SRIIAREDFNG-----KDRKNPDLVRGQE  184 (326)
Q Consensus       112 ~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~-~Ri~sRd~~~~-----~~~KdL~~l~~~~  184 (326)
                      .....+.||+.++|+.+.+. +.++|.|++.+.++..+++.++.. .+|. ..+++.+....     .+.+-++.++.++
T Consensus        66 ~~~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~~i~~~~~~~~kp~~~~~~~~~~~~g~~~  144 (205)
T 3m9l_A           66 AQGSRPAPGAVELVRELAGRGYRLGILTRNARELAHVTLEAIGLA-DCFAEADVLGRDEAPPKPHPGGLLKLAEAWDVSP  144 (205)
T ss_dssp             EEEEEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGSCGGGEECTTTSCCTTSSHHHHHHHHHTTCCG
T ss_pred             hhcCCCCccHHHHHHHHHhcCCeEEEEeCCchHHHHHHHHHcCch-hhcCcceEEeCCCCCCCCCHHHHHHHHHHcCCCH
Confidence            44578999999999999876 999999999999999999999876 5783 35777665221     1233345577888


Q ss_pred             CcEEEEeCCchhh
Q 040058          185 RGIVILDDTESVW  197 (326)
Q Consensus       185 ~~vvIvDD~~~vw  197 (326)
                      +.++.|+|+..-.
T Consensus       145 ~~~i~iGD~~~Di  157 (205)
T 3m9l_A          145 SRMVMVGDYRFDL  157 (205)
T ss_dssp             GGEEEEESSHHHH
T ss_pred             HHEEEECCCHHHH
Confidence            9999999998543

>2pr7_A Haloacid dehalogenase/epoxide hydrolase family; NP_599989.1, uncharacterized protein, structural genomics; 1.44A {Corynebacterium glutamicum atcc 13032}

Probab=98.24  E-value=1.5e-07  Score=75.57  Aligned_cols=88  Identities=14%  Similarity=0.126  Sum_probs=64.1

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      .+.||+.++|+.+.+. +.++|.|++...++..+++.++.. .+|. .+++.++...      .+.+-++.++.+++.++
T Consensus        18 ~~~~~~~~~l~~L~~~G~~~~i~S~~~~~~~~~~l~~~~l~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~   95 (137)
T 2pr7_A           18 EDQRRWRNLLAAAKKNGVGTVILSNDPGGLGAAPIRELETN-GVVD-KVLLSGELGVEKPEEAAFQAAADAIDLPMRDCV   95 (137)
T ss_dssp             HHHHHHHHHHHHHHHTTCEEEEEECSCCGGGGHHHHHHHHT-TSSS-EEEEHHHHSCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             ccCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHCChH-hhcc-EEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            3679999999999876 999999999999999999988665 4676 4665554332      13333455677888999


Q ss_pred             EEeCCchhhccCCCCeE
Q 040058          189 ILDDTESVWSDHTENLI  205 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I  205 (326)
                      +|+|++.-.......++
T Consensus        96 ~vgD~~~di~~a~~~G~  112 (137)
T 2pr7_A           96 LVDDSILNVRGAVEAGL  112 (137)
T ss_dssp             EEESCHHHHHHHHHHTC
T ss_pred             EEcCCHHHHHHHHHCCC
Confidence            99999865433233444

>4id3_A DNA repair protein REV1; BRCT domain, protein binding; HET: DNA; 1.97A {Saccharomyces cerevisiae S288C}

Probab=98.18  E-value=2.1e-06  Score=65.93  Aligned_cols=57  Identities=21%  Similarity=0.165  Sum_probs=43.8

Q ss_pred             ccC-CCcEEEEcCc-cch--HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhcCC
Q 040058          270 SEF-SRDVLYFSAI-FRD--CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWRRR  319 (326)
Q Consensus       270 ~~v-~g~~ivfs~~-~p~--~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r~  319 (326)
                      .++ +||.|+|+|. .|.  .++++.+                          .+.+...|++||+|.||.+|+..+++.
T Consensus         5 ~~~f~g~~~~i~g~~~~~~~~l~~~i~~~GG~~~~~~~~~~~~THlI~~~~~~~K~~~~~~~~iV~~~Wi~dci~~~~~l   84 (92)
T 4id3_A            5 SKIFKNCVIYINGYTKPGRLQLHEMIVLHGGKFLHYLSSKKTVTHIVASNLPLKKRIEFANYKVVSPDWIVDSVKEARLL   84 (92)
T ss_dssp             -CTTTTCEEEECSCCSSCHHHHHHHHHHTTCEEESSCCCTTTCCEEECSCCCHHHHHHTTTSCEECTHHHHHHHHHTSCC
T ss_pred             ccccCCEEEEEeCCCCcCHHHHHHHHHHCCCEEEEEecCCCceEEEEecCCCHHHHHHcCCCCEEcccHHHHHHHcCCcC
Confidence            457 9999999994 444  5666665                          122223689999999999999999999


Q ss_pred             CCCCCCC
Q 040058          320 PEDDYLP  326 (326)
Q Consensus       320 ~E~~f~~  326 (326)
                      ||++|..
T Consensus        85 ~e~~Y~l   91 (92)
T 4id3_A           85 PWQNYSL   91 (92)
T ss_dssp             CGGGGBC
T ss_pred             Chhhccc
Confidence            9999964

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=98.10  E-value=2.7e-06  Score=72.00  Aligned_cols=103  Identities=11%  Similarity=0.033  Sum_probs=70.8

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-----
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-----  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-----  142 (326)
                      ..++||+||||++....        +... .+             .+.+.||+.++|+.+.+. |.+.|.|++..     
T Consensus         2 k~v~~D~DGtL~~~~~~--------~~~~-~~-------------~~~~~~g~~~~l~~L~~~g~~~~i~Tn~~~~~~~~   59 (179)
T 3l8h_A            2 KLIILDRDGVVNQDSDA--------FVKS-PD-------------EWIALPGSLQAIARLTQADWTVVLATNQSGLARGL   59 (179)
T ss_dssp             CEEEECSBTTTBCCCTT--------CCCS-GG-------------GCCBCTTHHHHHHHHHHTTCEEEEEEECTTTTTTS
T ss_pred             CEEEEcCCCccccCCCc--------cCCC-HH-------------HceECcCHHHHHHHHHHCCCEEEEEECCCccccCc
Confidence            46899999999986421        0000 00             136889999999999877 99999999987     


Q ss_pred             ----------HHHHHHHHHhCCCCccccceEEe-----ecCCCC------CccccCCCCCCCCCcEEEEeCCchhh
Q 040058          143 ----------CYAEAAVKLLDLDSKYFSSRIIA-----REDFNG------KDRKNPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       143 ----------~YA~~v~~~LDP~~~~F~~Ri~s-----Rd~~~~------~~~KdL~~l~~~~~~vvIvDD~~~vw  197 (326)
                                .++..+++.++   .+|.. ++.     .+++..      .+.+-++.++.+++.+++|+|+..-.
T Consensus        60 ~~~~~~~~~~~~~~~~l~~~g---~~~~~-~~~~~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~~~vGD~~~Di  131 (179)
T 3l8h_A           60 FDTATLNAIHDKMHRALAQMG---GVVDA-IFMCPHGPDDGCACRKPLPGMYRDIARRYDVDLAGVPAVGDSLRDL  131 (179)
T ss_dssp             SCHHHHHHHHHHHHHHHHHTT---CCCCE-EEEECCCTTSCCSSSTTSSHHHHHHHHHHTCCCTTCEEEESSHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHhCC---CceeE-EEEcCCCCCCCCCCCCCCHHHHHHHHHHcCCCHHHEEEECCCHHHH
Confidence                      67778887776   34543 332     233321      13334556778899999999998433

>3kzx_A HAD-superfamily hydrolase, subfamily IA, variant; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 1.90A {Ehrlichia chaffeensis}

Probab=98.09  E-value=2e-06  Score=74.97  Aligned_cols=82  Identities=12%  Similarity=0.092  Sum_probs=64.8

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCC-
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQER-  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~-  185 (326)
                      .+...||+.++|+.+.+. +.++|+|++.+.++..+++.++-. .+|. .+++.++....      +.+-++.++.+++ 
T Consensus       101 ~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~  178 (231)
T 3kzx_A          101 NFMLNDGAIELLDTLKENNITMAIVSNKNGERLRSEIHHKNLT-HYFD-SIIGSGDTGTIKPSPEPVLAALTNINIEPSK  178 (231)
T ss_dssp             CCEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG-GGCS-EEEEETSSSCCTTSSHHHHHHHHHHTCCCST
T ss_pred             cceECcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHCCch-hhee-eEEcccccCCCCCChHHHHHHHHHcCCCccc
Confidence            457899999999999876 999999999999999999998876 5786 47666665431      2333455677887 


Q ss_pred             cEEEEeCCchhh
Q 040058          186 GIVILDDTESVW  197 (326)
Q Consensus       186 ~vvIvDD~~~vw  197 (326)
                      .++.|+|++.-.
T Consensus       179 ~~v~vGD~~~Di  190 (231)
T 3kzx_A          179 EVFFIGDSISDI  190 (231)
T ss_dssp             TEEEEESSHHHH
T ss_pred             CEEEEcCCHHHH
Confidence            899999998533

>1wf6_A Similar to S.pombe -RAD4+/CUT5+product (A40727); BRCT, topoisomerase II binding protein, checkpoint; NMR {Homo sapiens} SCOP: c.15.1.5

Probab=98.01  E-value=2.8e-06  Score=70.45  Aligned_cols=63  Identities=11%  Similarity=0.124  Sum_probs=47.9

Q ss_pred             HHHHHhccC-CCcEEEEcCccch---HHHHHHH-------------------------HHHhh---hCCceEEchHHHHH
Q 040058          264 YLPKVRSEF-SRDVLYFSAIFRD---CLWAEQE-------------------------EKFLV---QEKKFLVHPRWIDA  311 (326)
Q Consensus       264 il~~~r~~v-~g~~ivfs~~~p~---~~~~~ae-------------------------a~~a~---~~~~~vV~p~Wl~~  311 (326)
                      .+.+.+..+ +||.|+|+|.-+.   .|+++++                         .+.+.   ..+++||+|.||++
T Consensus        32 ~~~~~~~~lF~g~~i~i~G~~~~~~~~L~~~i~~~Gg~v~~~l~~~vTHvI~~~~~~~~~~~~~~~~~~~~iV~~~Wv~d  111 (132)
T 1wf6_A           32 SAFQAPEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLE  111 (132)
T ss_dssp             GGCCCCTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHH
T ss_pred             ccccccccccCCEEEEEECCChHHHHHHHHHHHHCCCEEeCcCCCCCeEEEECCchHHHHHHHHhhCCCCeEechHHHHH
Confidence            345566788 9999999987443   5666655                         12221   25789999999999


Q ss_pred             HHHHhcCCCCCCCCC
Q 040058          312 YYFLWRRRPEDDYLP  326 (326)
Q Consensus       312 ~~~~w~r~~E~~f~~  326 (326)
                      |+..+++.||+.|.|
T Consensus       112 si~~~~ll~e~~Y~~  126 (132)
T 1wf6_A          112 CFSKGYMLSEEPYIH  126 (132)
T ss_dssp             HHHHSSCCCSGGGBC
T ss_pred             HHHcCCcCCHhhccC
Confidence            999999999999976

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=97.97  E-value=8.2e-06  Score=76.71  Aligned_cols=61  Identities=7%  Similarity=-0.072  Sum_probs=51.6

Q ss_pred             HHHhccC-CCcEEEEcCccch---HHHHHHH---------------------------HHHhhhCCceEEchHHHHHHHH
Q 040058          266 PKVRSEF-SRDVLYFSAIFRD---CLWAEQE---------------------------EKFLVQEKKFLVHPRWIDAYYF  314 (326)
Q Consensus       266 ~~~r~~v-~g~~ivfs~~~p~---~~~~~ae---------------------------a~~a~~~~~~vV~p~Wl~~~~~  314 (326)
                      ...+..+ +||.|+|+|+.+.   .+.++++                           .+.|++.|++||+|.||.+|+.
T Consensus       193 ~~~~~~~f~g~~i~~tG~~~~~r~~l~~li~~~GG~~~~~ls~~~~THLI~~~~~g~K~~~A~~~gi~IV~~~Wl~dsi~  272 (298)
T 3olc_X          193 EDFKCPIFLGCIICVTGLCGLDRKEVQQLTVKHGGQYMGQLKMNECTHLIVQEPKGQKYECAKRWNVHCVTTQWFFDSIE  272 (298)
T ss_dssp             GGGBCCTTTTCEEEECSCCHHHHHHHHHHHHHTTCEECSSCCTTTCCEEECSSSCSHHHHHHHHTTCEEECHHHHHHHHH
T ss_pred             ccccccccCCeEEEEeCCCCccHHHHHHHHHHcCCEEeceecCCCceEEEEeCCCchHHHHHHHCCCeEEeHHHHHHHHH
Confidence            4567788 9999999998765   5677766                           2467788999999999999999


Q ss_pred             HhcCCCCCCCCC
Q 040058          315 LWRRRPEDDYLP  326 (326)
Q Consensus       315 ~w~r~~E~~f~~  326 (326)
                      +|++.||+.|.+
T Consensus       273 ~g~~lde~~Y~l  284 (298)
T 3olc_X          273 KGFCQDESIYKT  284 (298)
T ss_dssp             HTSCCCGGGSBS
T ss_pred             CCCCCCchhcCC
Confidence            999999999974

>3m1y_A Phosphoserine phosphatase (SERB); NYSGXRC, PSI II, phophoserine phosphatase, protein structure initiative, structural genomics; 2.40A {Helicobacter pylori} SCOP: c.108.1.0

Probab=97.95  E-value=3.8e-06  Score=72.30  Aligned_cols=91  Identities=13%  Similarity=0.046  Sum_probs=67.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecC-----------CCC-----CccccC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED-----------FNG-----KDRKNP  177 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~-----------~~~-----~~~KdL  177 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+++.++.. .+|.. +++.++           +..     .+.+-+
T Consensus        74 ~~~~~~~~~~l~~l~~~g~~~~i~S~~~~~~~~~~l~~~gl~-~~f~~-~~~~~~~~~~~~~~~~~~~~k~k~~~~~~~~  151 (217)
T 3m1y_A           74 LPLFEGALELVSALKEKNYKVVCFSGGFDLATNHYRDLLHLD-AAFSN-TLIVENDALNGLVTGHMMFSHSKGEMLLVLQ  151 (217)
T ss_dssp             CCBCBTHHHHHHHHHTTTEEEEEEEEEEHHHHHHHHHHHTCS-EEEEE-EEEEETTEEEEEEEESCCSTTHHHHHHHHHH
T ss_pred             CcCCCCHHHHHHHHHHCCCEEEEEcCCchhHHHHHHHHcCcc-hhccc-eeEEeCCEEEeeeccCCCCCCChHHHHHHHH
Confidence            56999999999999987 999999999999999999999876 57875 433332           111     122334


Q ss_pred             CCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          178 DLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       178 ~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +.++.+++.++.|+|++.-.......++.+
T Consensus       152 ~~~g~~~~~~i~vGDs~~Di~~a~~aG~~~  181 (217)
T 3m1y_A          152 RLLNISKTNTLVVGDGANDLSMFKHAHIKI  181 (217)
T ss_dssp             HHHTCCSTTEEEEECSGGGHHHHTTCSEEE
T ss_pred             HHcCCCHhHEEEEeCCHHHHHHHHHCCCeE
Confidence            556778899999999985444334455554

>2gmw_A D,D-heptose 1,7-bisphosphate phosphatase; Zn-binding protein, hydrolase; 1.50A {Escherichia coli} SCOP: c.108.1.19 PDB: 3esq_A 3esr_A 3l1u_A 3l1v_A 3l8e_A 3l8f_A 3l8g_A*

Probab=97.94  E-value=7e-06  Score=72.16  Aligned_cols=105  Identities=10%  Similarity=0.031  Sum_probs=72.2

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc---
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST---  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~---  141 (326)
                      .+...+++|+||||+.......  .        ..             .+.+.||+.++|+.+.+. +.++|.|++.   
T Consensus        23 ~~~k~v~~D~DGTL~~~~~~~~--~--------~~-------------~~~~~pg~~e~L~~L~~~G~~~~ivTn~~~~~   79 (211)
T 2gmw_A           23 KSVPAIFLDRDGTINVDHGYVH--E--------ID-------------NFEFIDGVIDAMRELKKMGFALVVVTNQSGIA   79 (211)
T ss_dssp             -CBCEEEECSBTTTBCCCSSCC--S--------GG-------------GCCBCTTHHHHHHHHHHTTCEEEEEEECTHHH
T ss_pred             hcCCEEEEcCCCCeECCCCccc--C--------cc-------------cCcCCcCHHHHHHHHHHCCCeEEEEECcCCcC
Confidence            4556899999999997642110  0        00             125789999999999876 9999999999   


Q ss_pred             ------------HHHHHHHHHHhCCCCccccceEEeecC-----------CCC------CccccCCCCCCCCCcEEEEeC
Q 040058          142 ------------RCYAEAAVKLLDLDSKYFSSRIIARED-----------FNG------KDRKNPDLVRGQERGIVILDD  192 (326)
Q Consensus       142 ------------~~YA~~v~~~LDP~~~~F~~Ri~sRd~-----------~~~------~~~KdL~~l~~~~~~vvIvDD  192 (326)
                                  ..++..+++.++..   |..-+++.++           +..      .+.+-++.++.+++.+++|+|
T Consensus        80 ~~~~~~~~~~~~~~~~~~~l~~~gl~---f~~~~~~~~~~~~~~~~~~~~~~~~KP~p~~~~~~~~~lgi~~~~~~~VGD  156 (211)
T 2gmw_A           80 RGKFTEAQFETLTEWMDWSLADRDVD---LDGIYYCPHHPQGSVEEFRQVCDCRKPHPGMLLSARDYLHIDMAASYMVGD  156 (211)
T ss_dssp             HTSSCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCBTTCSSGGGBSCCSSSTTSCHHHHHHHHHHTBCGGGCEEEES
T ss_pred             CCccCHHHHHHHHHHHHHHHHHcCCc---eEEEEECCcCCCCcccccCccCcCCCCCHHHHHHHHHHcCCCHHHEEEEcC
Confidence                        58899999988765   5543333321           211      122234556778889999999


Q ss_pred             Cchh
Q 040058          193 TESV  196 (326)
Q Consensus       193 ~~~v  196 (326)
                      +..-
T Consensus       157 ~~~D  160 (211)
T 2gmw_A          157 KLED  160 (211)
T ss_dssp             SHHH
T ss_pred             CHHH
Confidence            9843

>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}

Probab=97.93  E-value=7.8e-06  Score=68.22  Aligned_cols=114  Identities=7%  Similarity=0.010  Sum_probs=76.3

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++|+||||+++...-  +.                   .....-.+.|+..++|+.+.+. +.++|.|++...++.
T Consensus         9 ~k~v~~DlDGTL~~~~~~~--~~-------------------~~~~~~~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~   67 (162)
T 2p9j_A            9 LKLLIMDIDGVLTDGKLYY--TE-------------------HGETIKVFNVLDGIGIKLLQKMGITLAVISGRDSAPLI   67 (162)
T ss_dssp             CCEEEECCTTTTSCSEEEE--ET-------------------TEEEEEEEEHHHHHHHHHHHTTTCEEEEEESCCCHHHH
T ss_pred             eeEEEEecCcceECCceee--cC-------------------CCceeeeecccHHHHHHHHHHCCCEEEEEeCCCcHHHH
Confidence            4578999999999865321  00                   0012335689999999999876 999999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      .+++.++.. .+|..    .......+.+-++.++.+++.+++|+|+..-.......++.+
T Consensus        68 ~~l~~~gl~-~~~~~----~kp~~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~a~~ag~~~  123 (162)
T 2p9j_A           68 TRLKELGVE-EIYTG----SYKKLEIYEKIKEKYSLKDEEIGFIGDDVVDIEVMKKVGFPV  123 (162)
T ss_dssp             HHHHHTTCC-EEEEC----C--CHHHHHHHHHHTTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HHHHHcCCH-hhccC----CCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeE
Confidence            999998866 45542    000001122334456677889999999985443223445543

>3umb_A Dehalogenase-like hydrolase; 2.20A {Ralstonia solanacearum}

Probab=97.93  E-value=1.4e-05  Score=69.35  Aligned_cols=80  Identities=13%  Similarity=0.086  Sum_probs=64.3

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +...||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        98 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  175 (233)
T 3umb_A           98 LSAFPENVPVLRQLREMGLPLGILSNGNPQMLEIAVKSAGMS-GLFD-HVLSVDAVRLYKTAPAAYALAPRAFGVPAAQI  175 (233)
T ss_dssp             CEECTTHHHHHHHHHTTTCCEEEEESSCHHHHHHHHHTTTCT-TTCS-EEEEGGGTTCCTTSHHHHTHHHHHHTSCGGGE
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHHCCcH-hhcC-EEEEecccCCCCcCHHHHHHHHHHhCCCcccE
Confidence            57889999999999877 999999999999999999988876 5676 47766665431      334445677889999


Q ss_pred             EEEeCCchh
Q 040058          188 VILDDTESV  196 (326)
Q Consensus       188 vIvDD~~~v  196 (326)
                      +.|+|+..-
T Consensus       176 ~~vGD~~~D  184 (233)
T 3umb_A          176 LFVSSNGWD  184 (233)
T ss_dssp             EEEESCHHH
T ss_pred             EEEeCCHHH
Confidence            999999743

>3um9_A Haloacid dehalogenase, type II; haloacid dehalogenase-like hydrolase protein superfamily, defluorinase, hydrolase; 2.19A {Polaromonas SP}

Probab=97.91  E-value=1.5e-05  Score=68.88  Aligned_cols=79  Identities=14%  Similarity=0.060  Sum_probs=63.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +...||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        95 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  172 (230)
T 3um9_A           95 LTPFADVPQALQQLRAAGLKTAILSNGSRHSIRQVVGNSGLT-NSFD-HLISVDEVRLFKPHQKVYELAMDTLHLGESEI  172 (230)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHHTCG-GGCS-EEEEGGGTTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHHCCCh-hhcc-eeEehhhcccCCCChHHHHHHHHHhCCCcccE
Confidence            46789999999999877 999999999999999999998876 5676 47766665431      233455677888999


Q ss_pred             EEEeCCch
Q 040058          188 VILDDTES  195 (326)
Q Consensus       188 vIvDD~~~  195 (326)
                      +.|+|+..
T Consensus       173 ~~iGD~~~  180 (230)
T 3um9_A          173 LFVSCNSW  180 (230)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999984

>2no4_A (S)-2-haloacid dehalogenase IVA; HAD superfamily, rossman fold, hydrol; 1.93A {Burkholderia cepacia} PDB: 2no5_A*

Probab=97.86  E-value=8.7e-06  Score=71.50  Aligned_cols=79  Identities=14%  Similarity=0.103  Sum_probs=62.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus       104 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  181 (240)
T 2no4_A          104 LSAYPDAAETLEKLKSAGYIVAILSNGNDEMLQAALKASKLD-RVLD-SCLSADDLKIYKPDPRIYQFACDRLGVNPNEV  181 (240)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGTTCCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHhcCcH-HHcC-EEEEccccCCCCCCHHHHHHHHHHcCCCcccE
Confidence            46789999999999876 999999999999999999998876 5776 47766665421      233345667888999


Q ss_pred             EEEeCCch
Q 040058          188 VILDDTES  195 (326)
Q Consensus       188 vIvDD~~~  195 (326)
                      +.|+|+..
T Consensus       182 ~~iGD~~~  189 (240)
T 2no4_A          182 CFVSSNAW  189 (240)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999974

>2oda_A Hypothetical protein pspto_2114; haloacid dehalogenase, phosphonoacetaldehyde hydrolase, protein binding; HET: EPE; 1.90A {Pseudomonas syringae PV}

Probab=97.81  E-value=2.4e-05  Score=68.42  Aligned_cols=105  Identities=10%  Similarity=0.045  Sum_probs=67.8

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...++|||||||++-....    ....+.              ....+.+.||+.++|+.+.+. |.+.|-|+..+..+.
T Consensus         6 ~kav~fDlDGTL~d~~~~~----~~~~~~--------------~~~~~~~~pg~~e~L~~L~~~g~~~~i~T~~~~~~~~   67 (196)
T 2oda_A            6 FPALLFGLSGCLVDFGAQA----ATSDTP--------------DDEHAQLTPGAQNALKALRDQGMPCAWIDELPEALST   67 (196)
T ss_dssp             CSCEEEETBTTTBCTTSTT----TSCSSC--------------CGGGGSBCTTHHHHHHHHHHHTCCEEEECCSCHHHHH
T ss_pred             CCEEEEcCCCceEeccccc----cchhhc--------------ccccCCcCcCHHHHHHHHHHCCCEEEEEcCChHHHHH
Confidence            4578999999998721110    000000              001125789999999999765 999999999998874


Q ss_pred             HHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCC-CcEEEEeCCchhh
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQE-RGIVILDDTESVW  197 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~-~~vvIvDD~~~vw  197 (326)
                      .++   .   .+|. .+++.++...      .+.+-+++++... +.+++|.|++.=.
T Consensus        68 ~~~---~---~~~d-~v~~~~~~~~~KP~p~~~~~a~~~l~~~~~~~~v~VGDs~~Di  118 (196)
T 2oda_A           68 PLA---A---PVND-WMIAAPRPTAGWPQPDACWMALMALNVSQLEGCVLISGDPRLL  118 (196)
T ss_dssp             HHH---T---TTTT-TCEECCCCSSCTTSTHHHHHHHHHTTCSCSTTCEEEESCHHHH
T ss_pred             Hhc---C---ccCC-EEEECCcCCCCCCChHHHHHHHHHcCCCCCccEEEEeCCHHHH
Confidence            444   3   3565 4776676542      1334455666654 7899999998433

>2i6x_A Hydrolase, haloacid dehalogenase-like family; HAD superfamily, struct genomics, PSI-2, protein structure initiative; HET: MSE; 2.40A {Porphyromonas gingivalis}

Probab=97.78  E-value=2.7e-06  Score=72.98  Aligned_cols=94  Identities=10%  Similarity=0.038  Sum_probs=67.4

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHH------hCCCCccccceEEeecCCCC------CccccCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKL------LDLDSKYFSSRIIAREDFNG------KDRKNPDLVR  181 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~------LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~  181 (326)
                      .+.+.||+.++|+.+.+.+.++|.|++.+.++..+++.      ++.. .+|. .+++.++...      .+.+-++.++
T Consensus        87 ~~~~~~~~~~~l~~l~~g~~~~i~t~~~~~~~~~~~~~l~~~~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~  164 (211)
T 2i6x_A           87 LEEISAEKFDYIDSLRPDYRLFLLSNTNPYVLDLAMSPRFLPSGRTLD-SFFD-KVYASCQMGKYKPNEDIFLEMIADSG  164 (211)
T ss_dssp             EEEECHHHHHHHHHHTTTSEEEEEECCCHHHHHHHTSTTSSTTCCCGG-GGSS-EEEEHHHHTCCTTSHHHHHHHHHHHC
T ss_pred             hcccChHHHHHHHHHHcCCeEEEEeCCCHHHHHHHHhhhccccccCHH-HHcC-eEEeecccCCCCCCHHHHHHHHHHhC
Confidence            56889999999999988899999999999999988876      4443 4676 4665554432      1233345567


Q ss_pred             CCCCcEEEEeCCchhhccCCCCeEEeCc
Q 040058          182 GQERGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       182 ~~~~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      .+++.++.|+|++.-.......++.+-.
T Consensus       165 ~~~~~~~~igD~~~Di~~a~~aG~~~~~  192 (211)
T 2i6x_A          165 MKPEETLFIDDGPANVATAERLGFHTYC  192 (211)
T ss_dssp             CCGGGEEEECSCHHHHHHHHHTTCEEEC
T ss_pred             CChHHeEEeCCCHHHHHHHHHcCCEEEE
Confidence            8889999999998644333344555433

>2w43_A Hypothetical 2-haloalkanoic acid dehalogenase; hydrolase, metabolic process; HET: MES; 1.66A {Sulfolobus tokodaii} PDB: 2w11_A

Probab=97.77  E-value=1.9e-05  Score=67.50  Aligned_cols=87  Identities=11%  Similarity=0.106  Sum_probs=62.8

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.+ |+.+.+.+.+.|.|++.+.+++.+++.++.. .+|. .+++.++....      +.+-++.++  ++.++
T Consensus        73 ~~~~~~~~~-l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~--~~~~~  147 (201)
T 2w43_A           73 LKAYEDTKY-LKEISEIAEVYALSNGSINEVKQHLERNGLL-RYFK-GIFSAESVKEYKPSPKVYKYFLDSIG--AKEAF  147 (201)
T ss_dssp             CEECGGGGG-HHHHHHHSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTCHHHHHHHHHHHT--CSCCE
T ss_pred             cccCCChHH-HHHHHhCCeEEEEeCcCHHHHHHHHHHCCcH-HhCc-EEEehhhcCCCCCCHHHHHHHHHhcC--CCcEE
Confidence            478899999 9999755999999999999999999998876 5776 47766655421      222334455  78899


Q ss_pred             EEeCCchhhccCCCCeEE
Q 040058          189 ILDDTESVWSDHTENLIV  206 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I~  206 (326)
                      +|+|++.-.......++.
T Consensus       148 ~vGD~~~Di~~a~~aG~~  165 (201)
T 2w43_A          148 LVSSNAFDVIGAKNAGMR  165 (201)
T ss_dssp             EEESCHHHHHHHHHTTCE
T ss_pred             EEeCCHHHhHHHHHCCCE
Confidence            999998544322334444

>1qq5_A Protein (L-2-haloacid dehalogenase); hydrolase; 1.52A {Xanthobacter autotrophicus} SCOP: c.108.1.1 PDB: 1qq6_A* 1qq7_A* 1aq6_A

Probab=97.77  E-value=2.5e-05  Score=69.48  Aligned_cols=78  Identities=9%  Similarity=0.022  Sum_probs=62.4

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+. .+.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.++
T Consensus        92 ~~~~~~~~~~l~~l~-g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~  168 (253)
T 1qq5_A           92 LTPYPDAAQCLAELA-PLKRAILSNGAPDMLQALVANAGLT-DSFD-AVISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (253)
T ss_dssp             CCBCTTHHHHHHHHT-TSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             CCCCccHHHHHHHHc-CCCEEEEeCcCHHHHHHHHHHCCch-hhcc-EEEEccccCCCCCCHHHHHHHHHHcCCCHHHEE
Confidence            467899999999999 9999999999999999999998765 5776 46666665321      3334456678889999


Q ss_pred             EEeCCch
Q 040058          189 ILDDTES  195 (326)
Q Consensus       189 IvDD~~~  195 (326)
                      +|+|+..
T Consensus       169 ~vGD~~~  175 (253)
T 1qq5_A          169 FVSSNGF  175 (253)
T ss_dssp             EEESCHH
T ss_pred             EEeCChh
Confidence            9999974

>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*

Probab=97.77  E-value=2.2e-05  Score=76.72  Aligned_cols=106  Identities=16%  Similarity=0.145  Sum_probs=74.1

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc---
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST---  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~---  141 (326)
                      .+...++||+||||+.+.....      +.. ..            .-+..+-||+.++|+.|.+. |.++|.|+..   
T Consensus        56 ~~~k~v~fD~DGTL~~~~~~~~------~~~-~~------------~~~~~~~pgv~e~L~~L~~~G~~l~IvTN~~gi~  116 (416)
T 3zvl_A           56 PQGKVAAFDLDGTLITTRSGKV------FPT-SP------------SDWRILYPEIPKKLQELAAEGYKLVIFTNQMGIG  116 (416)
T ss_dssp             CCSSEEEECSBTTTEECSSCSS------SCS-ST------------TCCEESCTTHHHHHHHHHHTTCEEEEEEECHHHH
T ss_pred             CCCeEEEEeCCCCccccCCCcc------CCC-CH------------HHhhhhcccHHHHHHHHHHCCCeEEEEeCCcccc
Confidence            4567899999999998753211      100 00            11234789999999999876 9999999976   


Q ss_pred             ---------HHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCC----CCCCcEEEEeCCc
Q 040058          142 ---------RCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVR----GQERGIVILDDTE  194 (326)
Q Consensus       142 ---------~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~----~~~~~vvIvDD~~  194 (326)
                               +.++..+++.++..   |. .+++.+++...      +.+-++.++    .+++.+++|.|+.
T Consensus       117 ~g~~~~~~~~~~~~~~l~~lgl~---fd-~i~~~~~~~~~KP~p~~~~~a~~~l~~~~~v~~~~~l~VGDs~  184 (416)
T 3zvl_A          117 RGKLPAEVFKGKVEAVLEKLGVP---FQ-VLVATHAGLNRKPVSGMWDHLQEQANEGIPISVEDSVFVGDAA  184 (416)
T ss_dssp             TTSSCHHHHHHHHHHHHHHHTSC---CE-EEEECSSSTTSTTSSHHHHHHHHHSSTTCCCCGGGCEEECSCS
T ss_pred             CCCCCHHHHHHHHHHHHHHcCCC---EE-EEEECCCCCCCCCCHHHHHHHHHHhCCCCCCCHHHeEEEECCC
Confidence                     34488888888653   75 47777776531      333444555    6889999999996

>2ebw_A DNA repair protein REV1; A/B/A 3 layers, parallel beta-sheet, DNA replication, translession synthesis, TLS, DNA polymerase zeta, PCNA; HET: DNA; NMR {Homo sapiens}

Probab=97.72  E-value=3.3e-05  Score=60.07  Aligned_cols=55  Identities=20%  Similarity=0.110  Sum_probs=41.2

Q ss_pred             ccC-CCcEEEEcCccc-h--HHHHHHH---------------------------HHHhhhCCceEEchHHHHHHHHHhcC
Q 040058          270 SEF-SRDVLYFSAIFR-D--CLWAEQE---------------------------EKFLVQEKKFLVHPRWIDAYYFLWRR  318 (326)
Q Consensus       270 ~~v-~g~~ivfs~~~p-~--~~~~~ae---------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r  318 (326)
                      ..+ +||.|++||.-. .  .|.++.+                           .+.+  .+++||+|.||.+|+..+++
T Consensus        10 ~~lF~g~~~~isg~~~~~~~~L~~~i~~~GG~~~~~~~~~~~THlI~~~~~~~k~~~~--~~~~iV~p~Wl~dci~~~~~   87 (97)
T 2ebw_A           10 STIFSGVAIYVNGYTDPSAEELRKLMMLHGGQYHVYYSRSKTTHIIATNLPNAKIKEL--KGEKVIRPEWIVESIKAGRL   87 (97)
T ss_dssp             CCTTTTCEEEECSSCSSCHHHHHHHHHHTTCEECSSCCSSSCCEEECSCCCTTHHHHT--SSSCCBCTHHHHHHHHHTSC
T ss_pred             CCCCCCeEEEEeCCCcccHHHHHHHHHHcCCEEeeecCCCCCEEEEecCCChHHHHHh--cCCCEeChHHHHHHHHcCCc
Confidence            456 888888888632 2  5666554                           1112  27899999999999999999


Q ss_pred             CCCCCCCC
Q 040058          319 RPEDDYLP  326 (326)
Q Consensus       319 ~~E~~f~~  326 (326)
                      .||+.|..
T Consensus        88 l~~~~Y~l   95 (97)
T 2ebw_A           88 LSYIPYQL   95 (97)
T ss_dssp             CCSGGGBS
T ss_pred             cCchHcEe
Confidence            99999863

>3nuq_A Protein SSM1, putative nucleotide phosphatase; suppresses the 6-AU sensitivity of transcription elongation II; 1.70A {Saccharomyces cerevisiae} PDB: 3onn_A 3opx_A*

Probab=97.70  E-value=3.5e-05  Score=69.64  Aligned_cols=81  Identities=15%  Similarity=0.104  Sum_probs=62.8

Q ss_pred             EEeCccHHHHHHHhhcC-c--eEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC----------CccccCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL-V--DIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG----------KDRKNPDLVR  181 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-y--El~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~~~KdL~~l~  181 (326)
                      +...||+.++|+.+.+. +  .+.|.|++.+.++..+++.++.. .+|.. +++.++...          .+.+-++.++
T Consensus       141 ~~~~p~~~~~L~~L~~~g~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~fd~-v~~~~~~~~~~~~~Kp~~~~~~~~~~~lg  218 (282)
T 3nuq_A          141 LKPDIPLRNMLLRLRQSGKIDKLWLFTNAYKNHAIRCLRLLGIA-DLFDG-LTYCDYSRTDTLVCKPHVKAFEKAMKESG  218 (282)
T ss_dssp             CCCCHHHHHHHHHHHHSSSCSEEEEECSSCHHHHHHHHHHHTCT-TSCSE-EECCCCSSCSSCCCTTSHHHHHHHHHHHT
T ss_pred             cCcChhHHHHHHHHHhCCCCceEEEEECCChHHHHHHHHhCCcc-cccce-EEEeccCCCcccCCCcCHHHHHHHHHHcC
Confidence            56899999999999875 8  99999999999999999999877 57874 665554321          1233345567


Q ss_pred             CCC-CcEEEEeCCchhh
Q 040058          182 GQE-RGIVILDDTESVW  197 (326)
Q Consensus       182 ~~~-~~vvIvDD~~~vw  197 (326)
                      .++ +.+++|+|+..-.
T Consensus       219 i~~~~~~i~vGD~~~Di  235 (282)
T 3nuq_A          219 LARYENAYFIDDSGKNI  235 (282)
T ss_dssp             CCCGGGEEEEESCHHHH
T ss_pred             CCCcccEEEEcCCHHHH
Confidence            887 9999999998433

>3pc6_A DNA repair protein XRCC1; BRCT domain, protein:protein interactions, DNA L III-alpha BRCT2 domain, DNA binding protein; HET: DNA; 1.90A {Mus musculus} SCOP: c.15.1.1 PDB: 3pc8_A* 3qvg_B* 1cdz_A

Probab=97.67  E-value=6.2e-05  Score=60.13  Aligned_cols=55  Identities=18%  Similarity=0.210  Sum_probs=43.1

Q ss_pred             cC-CCcEEEEcCccch----HHHHHHH--------------------------HHHhh--hCCceEEchHHHHHHHHHhc
Q 040058          271 EF-SRDVLYFSAIFRD----CLWAEQE--------------------------EKFLV--QEKKFLVHPRWIDAYYFLWR  317 (326)
Q Consensus       271 ~v-~g~~ivfs~~~p~----~~~~~ae--------------------------a~~a~--~~~~~vV~p~Wl~~~~~~w~  317 (326)
                      .+ .|++++||+.+|.    .++++.-                          .+.|+  ..++.+|+|+||++|+..|+
T Consensus         6 d~F~g~~f~l~~~~p~~~r~~l~ryiia~GG~v~~~~~~~vTHvIt~~~~d~~~~~a~~~~p~~~~V~P~WI~~Ci~~~k   85 (104)
T 3pc6_A            6 DFFEGKHFFLYGEFPGDERRRLIRYVTAFNGELEDYMNERVQFVITAQEWDPNFEEALMENPSLAFVRPRWIYSCNEKQK   85 (104)
T ss_dssp             CTTTTCEEEEESCCSTTHHHHHHHHHHHTTCEECSSCCTTCCEEEESSCCCHHHHHHHTTCTTCEEECHHHHHHHHHHTS
T ss_pred             hhhCCeEEEEcCCCcHHHHHHHHHHHHHcCCEEEcccCCCceEEEeCCCCChhHHHHhhhCCCCeEEccHHHHHHHhcCc
Confidence            45 8999999999974    4555432                          12243  24799999999999999999


Q ss_pred             CCCCCCCC
Q 040058          318 RRPEDDYL  325 (326)
Q Consensus       318 r~~E~~f~  325 (326)
                      +.+++.|.
T Consensus        86 lvp~~~y~   93 (104)
T 3pc6_A           86 LLPHQLYG   93 (104)
T ss_dssp             CCCGGGGB
T ss_pred             cCCcccce
Confidence            99999985

>3iru_A Phoshonoacetaldehyde hydrolase like protein; phosphonoacetaldehyde hydrolase like P structural genomics, PSI-2, protein structure initiative; 2.30A {Oleispira antarctica} SCOP: c.108.1.0

Probab=97.66  E-value=1.2e-05  Score=71.51  Aligned_cols=82  Identities=12%  Similarity=-0.032  Sum_probs=63.4

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCC-Cc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQE-RG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~-~~  186 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++..+..|. .+++.++....      +.+-++.++.++ +.
T Consensus       110 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~~~~~~l~~~~~~~~~~~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  188 (277)
T 3iru_A          110 SQLIPGWKEVFDKLIAQGIKVGGNTGYGPGMMAPALIAAKEQGYTPA-STVFATDVVRGRPFPDMALKVALELEVGHVNG  188 (277)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHHHTTCCCS-EEECGGGSSSCTTSSHHHHHHHHHHTCSCGGG
T ss_pred             CccCcCHHHHHHHHHHcCCeEEEEeCCchHHHHHHHHhcCcccCCCc-eEecHHhcCCCCCCHHHHHHHHHHcCCCCCcc
Confidence            57899999999999876 99999999999999999998776532264 57776665431      233455678888 99


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|+|+..-.
T Consensus       189 ~i~vGD~~~Di  199 (277)
T 3iru_A          189 CIKVDDTLPGI  199 (277)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEEcCCHHHH
Confidence            99999998433

>4eze_A Haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 2.27A {Salmonella enterica subsp}

Probab=97.59  E-value=4.1e-05  Score=72.16  Aligned_cols=82  Identities=13%  Similarity=0.103  Sum_probs=61.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecC---------CCC------CccccCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED---------FNG------KDRKNPD  178 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~---------~~~------~~~KdL~  178 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+++.++-. .+|...+...+.         ...      .+.+-++
T Consensus       178 ~~l~pg~~e~L~~Lk~~G~~v~IvSn~~~~~~~~~l~~lgl~-~~f~~~l~~~dg~~tg~i~~~~~~~kpkp~~~~~~~~  256 (317)
T 4eze_A          178 MTLSPGLLTILPVIKAKGFKTAIISGGLDIFTQRLKARYQLD-YAFSNTVEIRDNVLTDNITLPIMNAANKKQTLVDLAA  256 (317)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred             CEECcCHHHHHHHHHhCCCEEEEEeCccHHHHHHHHHHcCCC-eEEEEEEEeeCCeeeeeEecccCCCCCCHHHHHHHHH
Confidence            46999999999999876 999999999999999999999886 578764432221         000      1223344


Q ss_pred             CCCCCCCcEEEEeCCchhh
Q 040058          179 LVRGQERGIVILDDTESVW  197 (326)
Q Consensus       179 ~l~~~~~~vvIvDD~~~vw  197 (326)
                      .++.+++.++.|+|++.-.
T Consensus       257 ~lgv~~~~~i~VGDs~~Di  275 (317)
T 4eze_A          257 RLNIATENIIACGDGANDL  275 (317)
T ss_dssp             HHTCCGGGEEEEECSGGGH
T ss_pred             HcCCCcceEEEEeCCHHHH
Confidence            5677888999999998543

>2o2x_A Hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; 1.50A {Mesorhizobium loti} SCOP: c.108.1.19

Probab=97.55  E-value=7e-05  Score=65.73  Aligned_cols=104  Identities=13%  Similarity=0.026  Sum_probs=70.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH--
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR--  142 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~--  142 (326)
                      .....+++|+||||+.......         . ..             ...+.||+.++|+.+.+. +.++|.|++..  
T Consensus        29 ~~~k~i~~D~DGtl~~~~~y~~---------~-~~-------------~~~~~~g~~e~L~~L~~~G~~~~i~Tn~~~~~   85 (218)
T 2o2x_A           29 PHLPALFLDRDGTINVDTDYPS---------D-PA-------------EIVLRPQMLPAIATANRAGIPVVVVTNQSGIA   85 (218)
T ss_dssp             SSCCCEEECSBTTTBCCCSCTT---------C-GG-------------GCCBCGGGHHHHHHHHHHTCCEEEEEECHHHH
T ss_pred             hcCCEEEEeCCCCcCCCCcccC---------C-cc-------------cCeECcCHHHHHHHHHHCCCEEEEEcCcCCCC
Confidence            3456789999999998642211         0 00             125789999999999865 99999999998  


Q ss_pred             -------------HHHHHHHHHhCCCCccccceEEee-----------cCCCC------CccccCCCCCCCCCcEEEEeC
Q 040058          143 -------------CYAEAAVKLLDLDSKYFSSRIIAR-----------EDFNG------KDRKNPDLVRGQERGIVILDD  192 (326)
Q Consensus       143 -------------~YA~~v~~~LDP~~~~F~~Ri~sR-----------d~~~~------~~~KdL~~l~~~~~~vvIvDD  192 (326)
                                   .++..+++.++-.   |..-+.+.           ++...      .+.+-+++++.+++.+++|+|
T Consensus        86 ~~~~~~~~~~~~~~~~~~~l~~~gl~---~~~~~~~~~~~~g~~~~~~~~~~~~KP~~~~~~~~~~~~~i~~~~~~~VGD  162 (218)
T 2o2x_A           86 RGYFGWSAFAAVNGRVLELLREEGVF---VDMVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGD  162 (218)
T ss_dssp             TTSCCHHHHHHHHHHHHHHHHHTTCC---CSEEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEES
T ss_pred             cccccHHHHHHHHHHHHHHHHHcCCc---eeeEEEeecCCCCceeecccCCccCCCCHHHHHHHHHHcCCCHHHEEEEeC
Confidence                         7888888887643   43222232           22221      122334456778899999999


Q ss_pred             Cch
Q 040058          193 TES  195 (326)
Q Consensus       193 ~~~  195 (326)
                      +..
T Consensus       163 ~~~  165 (218)
T 2o2x_A          163 KLA  165 (218)
T ss_dssp             SHH
T ss_pred             CHH
Confidence            983

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=97.53  E-value=8.1e-05  Score=66.04  Aligned_cols=57  Identities=9%  Similarity=0.009  Sum_probs=43.8

Q ss_pred             hccC-CCcEEEEcCccchHHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhcCCCC
Q 040058          269 RSEF-SRDVLYFSAIFRDCLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWRRRPE  321 (326)
Q Consensus       269 r~~v-~g~~ivfs~~~p~~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r~~E  321 (326)
                      +++. ++++|+|||+.+..+-++.+                          ...|...|++||+|+||.+|...++..||
T Consensus         6 ~~~~~~~~~v~~sG~~~~~~~~~i~~lGg~~~~~~~~~THlI~~~~~rt~K~l~a~~~g~~IV~~~Wl~~~~~~~~~l~e   85 (209)
T 2etx_A            6 LNQESTAPKVLFTGVVDARGERAVLALGGSLAGSAAEASHLVTDRIRRTVKFLCALGRGIPILSLDWLHQSRKAGFFLPP   85 (209)
T ss_dssp             ------CCEEEECSSCCHHHHHHHHHTTCEECSSTTTCSEEECSSCCCSHHHHHHHHHTCCEECTHHHHHHHHHTSCCCS
T ss_pred             ccccCCCcEEEEeCCCcHHHHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHhcCCccccHHHHHHHHHcCCCCCh
Confidence            4566 99999999999875544444                          12577789999999999999999999999


Q ss_pred             CCCC
Q 040058          322 DDYL  325 (326)
Q Consensus       322 ~~f~  325 (326)
                      +.|.
T Consensus        86 ~~y~   89 (209)
T 2etx_A           86 DEYV   89 (209)
T ss_dssp             GGGB
T ss_pred             hhcc
Confidence            9885

>2i7d_A 5'(3')-deoxyribonucleotidase, cytosolic type; hydrolase; HET: DUR; 1.20A {Homo sapiens} PDB: 2jar_A* 2jao_A*

Probab=97.51  E-value=6.4e-06  Score=71.01  Aligned_cols=67  Identities=12%  Similarity=0.159  Sum_probs=49.4

Q ss_pred             EEeCccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeC
Q 040058          115 VKLRPFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDD  192 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD  192 (326)
                      +.+.||+.++|+.+.+.  +.+.|.|++.+.++..+++.++.    |. .+++.+        -+++++.+++.+++|.|
T Consensus        72 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~gl----f~-~i~~~~--------~~~~~~~~~~~~~~vgD  138 (193)
T 2i7d_A           72 LEPIPGALDAVREMNDLPDTQVFICTSPLLKYHHCVGEKYRW----VE-QHLGPQ--------FVERIILTRDKTVVLGD  138 (193)
T ss_dssp             CCBCTTHHHHHHHHHTSTTEEEEEEECCCSSCTTTHHHHHHH----HH-HHHCHH--------HHTTEEECSCGGGBCCS
T ss_pred             CccCcCHHHHHHHHHhCCCCeEEEEeCCChhhHHHHHHHhCc----hh-hhcCHH--------HHHHcCCCcccEEEECC
Confidence            46899999999999874  99999999999999998887754    54 344332        24455556667777544


Q ss_pred             Cc
Q 040058          193 TE  194 (326)
Q Consensus       193 ~~  194 (326)
                      +.
T Consensus       139 s~  140 (193)
T 2i7d_A          139 LL  140 (193)
T ss_dssp             EE
T ss_pred             ch
Confidence            43

>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*

Probab=97.48  E-value=7.8e-05  Score=63.73  Aligned_cols=114  Identities=4%  Similarity=-0.063  Sum_probs=74.7

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      -..+++|+||||+++...-  ..                   .....-.+.|...+.|+.+.+. +.++|.|+....++.
T Consensus         8 ik~i~~DlDGTL~~~~~~~--~~-------------------~~~~~~~~~~~~~~~l~~L~~~G~~~~i~Tg~~~~~~~   66 (180)
T 1k1e_A            8 IKFVITDVDGVLTDGQLHY--DA-------------------NGEAIKSFHVRDGLGIKMLMDADIQVAVLSGRDSPILR   66 (180)
T ss_dssp             CCEEEEECTTTTSCSEEEE--ET-------------------TEEEEEEEEHHHHHHHHHHHHTTCEEEEEESCCCHHHH
T ss_pred             CeEEEEeCCCCcCCCCeee--cc-------------------CcceeeeeccchHHHHHHHHHCCCeEEEEeCCCcHHHH
Confidence            4578999999999875211  00                   0022235678888999999865 999999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCCC-CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNG-KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~-~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      .+++.++.. .+|...     .... .+.+-++.++.+++.++.|.|+..-.......++.+-
T Consensus        67 ~~~~~lgl~-~~~~~~-----k~k~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~  123 (180)
T 1k1e_A           67 RRIADLGIK-LFFLGK-----LEKETACFDLMKQAGVTAEQTAYIGDDSVDLPAFAACGTSFA  123 (180)
T ss_dssp             HHHHHHTCC-EEEESC-----SCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred             HHHHHcCCc-eeecCC-----CCcHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHcCCeEE
Confidence            999999876 355321     0000 1122234456677899999999854432233445443

>3bwv_A Putative 5'(3')-deoxyribonucleotidase; NP_764060.1, deoxyribonucleotidase-like protein; HET: MSE; 1.55A {Staphylococcus epidermidis}

Probab=97.42  E-value=0.0001  Score=62.55  Aligned_cols=78  Identities=12%  Similarity=0.160  Sum_probs=49.5

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCc---HHHH--HHHHHH-hCCCCccccceEEeecCCCCCccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMST---RCYA--EAAVKL-LDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~---~~YA--~~v~~~-LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+.+.+.+.|-|+++   +...  ...++. ++.. .+| +.+++.++.         ++    +.++
T Consensus        68 ~~~~pg~~e~L~~L~~~~~~~i~T~~~~~~~~~~~~~~~l~~~f~~~-~~~-~~i~~~~~~---------~l----~~~l  132 (180)
T 3bwv_A           68 LDVMPHAQEVVKQLNEHYDIYIATAAMDVPTSFHDKYEWLLEYFPFL-DPQ-HFVFCGRKN---------II----LADY  132 (180)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEECC--CCSHHHHHHHHHHHHCTTS-CGG-GEEECSCGG---------GB----CCSE
T ss_pred             CCCCcCHHHHHHHHHhcCCEEEEeCCCCcchHHHHHHHHHHHHcCCC-Ccc-cEEEeCCcC---------ee----cccE
Confidence            578899999999998889999999983   2222  333433 3322 344 467765541         12    5689


Q ss_pred             EEeCCchhhccCCCCeEEe
Q 040058          189 ILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I~I  207 (326)
                      +|||++..-.......|.+
T Consensus       133 ~ieDs~~~i~~aaG~~i~~  151 (180)
T 3bwv_A          133 LIDDNPKQLEIFEGKSIMF  151 (180)
T ss_dssp             EEESCHHHHHHCSSEEEEE
T ss_pred             EecCCcchHHHhCCCeEEe
Confidence            9999997554322244444

>3e8m_A Acylneuraminate cytidylyltransferase; 2-keto-3-deoxynononic acid 9-phosphate phosphohydrolase, nucleotidyltransferase; HET: PEG PG4 EDO PGE; 1.10A {Bacteroides thetaiotaomicron} PDB: 3e84_A 3e81_A*

Probab=97.38  E-value=2.2e-05  Score=65.60  Aligned_cols=116  Identities=9%  Similarity=-0.081  Sum_probs=74.2

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      -..+++|+||||+++...-... .            ..      ..-...++++  .|+.+.+. +.+.|.|++.+..++
T Consensus         4 ik~vifD~DGTL~~~~~~~~~~-~------------~~------~~~~~~~~~~--~l~~l~~~g~~~~i~T~~~~~~~~   62 (164)
T 3e8m_A            4 IKLILTDIDGVWTDGGMFYDQT-G------------NE------WKKFNTSDSA--GIFWAHNKGIPVGILTGEKTEIVR   62 (164)
T ss_dssp             CCEEEECSTTTTSSSEEEECSS-S------------CE------EEEEEGGGHH--HHHHHHHTTCCEEEECSSCCHHHH
T ss_pred             ceEEEEcCCCceEcCcEEEcCC-C------------cE------EEEecCChHH--HHHHHHHCCCEEEEEeCCChHHHH
Confidence            3578999999999975221000 0            00      1112345554  78888766 999999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCc
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      .+++.++-. .+|...    ......+.+-++.++.+++.+++|.|+..-.......++.+-.
T Consensus        63 ~~~~~~gl~-~~~~~~----kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~~~  120 (164)
T 3e8m_A           63 RRAEKLKVD-YLFQGV----VDKLSAAEELCNELGINLEQVAYIGDDLNDAKLLKRVGIAGVP  120 (164)
T ss_dssp             HHHHHTTCS-EEECSC----SCHHHHHHHHHHHHTCCGGGEEEECCSGGGHHHHTTSSEEECC
T ss_pred             HHHHHcCCC-Eeeccc----CChHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCeEEc
Confidence            999998876 455431    0000112333455677889999999998544433456665544

>3sqd_A PAX-interacting protein 1; tandem BRCT domains, cell cycle; HET: SEP; 2.15A {Homo sapiens}

Probab=97.34  E-value=0.00023  Score=63.89  Aligned_cols=53  Identities=13%  Similarity=0.199  Sum_probs=43.3

Q ss_pred             CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhcCCCCCC
Q 040058          273 SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWRRRPEDD  323 (326)
Q Consensus       273 ~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~  323 (326)
                      .|++|+|||+-+.   .+-++++                          ...|...|+.||+|+||.+|...++..||+.
T Consensus        15 ~~~~i~~SG~~~~~~~~l~~~i~~lGg~v~~~~~~~THLI~~~~~rT~K~l~A~~~g~~IVs~~Wl~~c~~~~~~l~e~~   94 (219)
T 3sqd_A           15 LTPFVLFTGFEPVQVQQYIKKLYILGGEVAESAQKCTHLIASKVTRTVKFLTAISVVKHIVTPEWLEECFRCQKFIDEQN   94 (219)
T ss_dssp             GCCEEEECSCCHHHHHHHHHHHHHTTCEECSSGGGCSEEECSSCCCCHHHHHHTTTCSEEECHHHHHHHHHHTSCCCSGG
T ss_pred             CCeEEEEeCCChHHHHHHHHHHHHCCCEEeCCCCCceEEEECCCCCCHHHHHHHHcCCCEecHHHHHHHHHcCCCCChHh
Confidence            7899999998765   3444443                          1357778999999999999999999999999


Q ss_pred             CC
Q 040058          324 YL  325 (326)
Q Consensus       324 f~  325 (326)
                      |.
T Consensus        95 y~   96 (219)
T 3sqd_A           95 YI   96 (219)
T ss_dssp             GB
T ss_pred             cc
Confidence            85

>3mn1_A Probable YRBI family phosphatase; structural genomics, PSI, protein structure initiative, NYSG phosphatase; 1.80A {Pseudomonas syringae PV} PDB: 3nrj_A

Probab=97.33  E-value=9.8e-05  Score=63.86  Aligned_cols=116  Identities=15%  Similarity=-0.028  Sum_probs=73.2

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..+++|+||||+++...-.  ..            ...     .....++++.  +|+.+.+. +.+.|.|++.+..
T Consensus        17 ~~ik~vifD~DGTL~d~~~~~~--~~------------~~~-----~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~   75 (189)
T 3mn1_A           17 KAIKLAVFDVDGVLTDGRLYFM--ED------------GSE-----IKTFNTLDGQ--GIKMLIASGVTTAIISGRKTAI   75 (189)
T ss_dssp             HTCCEEEECSTTTTSCSEEEEE--TT------------SCE-----EEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHH
T ss_pred             HhCCEEEEcCCCCcCCccEeec--cC------------CcE-----eeeeccccHH--HHHHHHHCCCEEEEEECcChHH
Confidence            3446899999999999853210  00            000     1123455555  88888765 9999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      ++.+++.++.. .+|.. +   .+-.....+-++.++.+++.++.|.|+..=.......++.+
T Consensus        76 ~~~~~~~lgl~-~~f~~-~---~~K~~~~~~~~~~~g~~~~~~~~vGD~~nDi~~~~~ag~~~  133 (189)
T 3mn1_A           76 VERRAKSLGIE-HLFQG-R---EDKLVVLDKLLAELQLGYEQVAYLGDDLPDLPVIRRVGLGM  133 (189)
T ss_dssp             HHHHHHHHTCS-EEECS-C---SCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HHHHHHHcCCH-HHhcC-c---CChHHHHHHHHHHcCCChhHEEEECCCHHHHHHHHHCCCeE
Confidence            99999999876 45653 2   00001122223456778889999999985333222344444

>3ij5_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; IDP022 hydrolase, lipopolysaccharide biosynthesis, magnesium, STRU genomics; 1.95A {Yersinia pestis}

Probab=97.22  E-value=0.00016  Score=64.15  Aligned_cols=117  Identities=11%  Similarity=0.049  Sum_probs=75.0

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA  145 (326)
                      +-..+||||||||+++...-.  ..            ...     .....+++++  +|+.+.+. +.+.|.|+..+..|
T Consensus        48 ~ik~viFDlDGTL~Ds~~~~~--~~------------~~~-----~~~~~~~d~~--~L~~L~~~G~~l~I~T~~~~~~~  106 (211)
T 3ij5_A           48 NIRLLICDVDGVMSDGLIYMG--NQ------------GEE-----LKAFNVRDGY--GIRCLITSDIDVAIITGRRAKLL  106 (211)
T ss_dssp             TCSEEEECCTTTTSSSEEEEE--TT------------SCE-----EEEEEHHHHH--HHHHHHHTTCEEEEECSSCCHHH
T ss_pred             CCCEEEEeCCCCEECCHHHHh--hh------------hHH-----HHHhccchHH--HHHHHHHCCCEEEEEeCCCHHHH
Confidence            346899999999999862110  00            000     1122345555  88888766 99999999999999


Q ss_pred             HHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCc
Q 040058          146 EAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       146 ~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      ..+++.++.. .+|...    ..-.....+-++.++.+++.++.|.|+..=...-...++.+.+
T Consensus       107 ~~~l~~lgi~-~~f~~~----k~K~~~l~~~~~~lg~~~~~~~~vGDs~nDi~~~~~ag~~~a~  165 (211)
T 3ij5_A          107 EDRANTLGIT-HLYQGQ----SDKLVAYHELLATLQCQPEQVAYIGDDLIDWPVMAQVGLSVAV  165 (211)
T ss_dssp             HHHHHHHTCC-EEECSC----SSHHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHTTSSEEEEC
T ss_pred             HHHHHHcCCc-hhhccc----CChHHHHHHHHHHcCcCcceEEEEcCCHHHHHHHHHCCCEEEe
Confidence            9999999876 456532    0000012223345677888999999998544433455565543

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=97.21  E-value=0.00015  Score=62.00  Aligned_cols=101  Identities=10%  Similarity=-0.001  Sum_probs=65.2

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      -..++|||||||++....-  ...            ...     ......++++  +|+.+.+. +.+.|.|++.+.+++
T Consensus        12 ~k~vifD~DGTL~d~~~~~--~~~------------~~~-----~~~~~~~~~~--~l~~L~~~g~~~~i~T~~~~~~~~   70 (176)
T 3mmz_A           12 IDAVVLDFDGTQTDDRVLI--DSD------------GRE-----FVSVHRGDGL--GIAALRKSGLTMLILSTEQNPVVA   70 (176)
T ss_dssp             CSEEEECCTTTTSCSCCEE--CTT------------CCE-----EEEEEHHHHH--HHHHHHHTTCEEEEEESSCCHHHH
T ss_pred             CCEEEEeCCCCcCcCCEee--cCC------------ccH-----hHhcccccHH--HHHHHHHCCCeEEEEECcChHHHH
Confidence            3589999999999932110  000            000     1112344554  88888765 999999999999999


Q ss_pred             HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      .+++.++..  +|...    ..-.....+-++.++.+++.++.|.|+..
T Consensus        71 ~~~~~lgi~--~~~~~----~~k~~~l~~~~~~~~~~~~~~~~vGD~~n  113 (176)
T 3mmz_A           71 ARARKLKIP--VLHGI----DRKDLALKQWCEEQGIAPERVLYVGNDVN  113 (176)
T ss_dssp             HHHHHHTCC--EEESC----SCHHHHHHHHHHHHTCCGGGEEEEECSGG
T ss_pred             HHHHHcCCe--eEeCC----CChHHHHHHHHHHcCCCHHHEEEEcCCHH
Confidence            999999876  55431    00000122333456678889999999974

>3n07_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphat; structural genomics, phosphatase, PSI-2, protein structure initiative; HET: MSE; 1.76A {Vibrio cholerae}

Probab=97.14  E-value=6.5e-05  Score=65.87  Aligned_cols=117  Identities=10%  Similarity=0.023  Sum_probs=70.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..++||+||||+.+...-... .            ..+        ..+.+.-..-|+.+.+. +.+.|.|++.+..
T Consensus        23 ~~ik~vifD~DGtL~d~~~~~~~~-~------------~~~--------~~~~~~d~~~l~~L~~~G~~~~ivT~~~~~~   81 (195)
T 3n07_A           23 KQIKLLICDVDGVFSDGLIYMGNQ-G------------EEL--------KTFHTRDGYGVKALMNAGIEIAIITGRRSQI   81 (195)
T ss_dssp             HTCCEEEECSTTTTSCSCCEECTT-S------------CEE--------CCCCTTHHHHHHHHHHTTCEEEEECSSCCHH
T ss_pred             hCCCEEEEcCCCCcCCCcEEEccC-c------------hhh--------heeecccHHHHHHHHHCCCEEEEEECcCHHH
Confidence            445689999999999865221000 0            000        01111122237888765 9999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      +..+++.++.. .+|...    ..-.....+-++.++.+++.++.|.|+..=...-...++.+.
T Consensus        82 ~~~~l~~lgi~-~~~~~~----k~k~~~~~~~~~~~~~~~~~~~~vGD~~nDi~~~~~ag~~va  140 (195)
T 3n07_A           82 VENRMKALGIS-LIYQGQ----DDKVQAYYDICQKLAIAPEQTGYIGDDLIDWPVMEKVALRVC  140 (195)
T ss_dssp             HHHHHHHTTCC-EEECSC----SSHHHHHHHHHHHHCCCGGGEEEEESSGGGHHHHTTSSEEEE
T ss_pred             HHHHHHHcCCc-EEeeCC----CCcHHHHHHHHHHhCCCHHHEEEEcCCHHHHHHHHHCCCEEE
Confidence            99999999876 445431    000001122234467788899999999854443334555544

>3n1u_A Hydrolase, HAD superfamily, subfamily III A; structural genomics, PSI-2; 1.80A {Legionella pneumophila} SCOP: c.108.1.0

Probab=97.06  E-value=0.0001  Score=64.01  Aligned_cols=116  Identities=9%  Similarity=0.025  Sum_probs=71.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..++||+||||+.+...-.  +.       .    +.+.      ...+++++  -|+.+.+. +.+.|.|++++..
T Consensus        17 ~~ik~vifD~DGtL~~~~~~~~--~~-------~----~~~~------~~~~~d~~--~l~~L~~~g~~~~ivTn~~~~~   75 (191)
T 3n1u_A           17 KKIKCLICDVDGVLSDGLLHID--NH-------G----NELK------SFHVQDGM--GLKLLMAAGIQVAIITTAQNAV   75 (191)
T ss_dssp             HTCSEEEECSTTTTBCSCCEEC--TT-------C----CEEC------CBCHHHHH--HHHHHHHTTCEEEEECSCCSHH
T ss_pred             hcCCEEEEeCCCCCCCCceeec--CC-------c----hhhh------hccccChH--HHHHHHHCCCeEEEEeCcChHH
Confidence            4456899999999998642110  00       0    0000      01233333  47888765 9999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +..+++.++-. .+|.. +   ......+.+-++.++.+++.++.|.|+..-.......++.+
T Consensus        76 ~~~~l~~lgl~-~~~~~-~---kpk~~~~~~~~~~~~~~~~~~~~vGD~~~Di~~~~~ag~~~  133 (191)
T 3n1u_A           76 VDHRMEQLGIT-HYYKG-Q---VDKRSAYQHLKKTLGLNDDEFAYIGDDLPDLPLIQQVGLGV  133 (191)
T ss_dssp             HHHHHHHHTCC-EEECS-C---SSCHHHHHHHHHHHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HHHHHHHcCCc-cceeC-C---CChHHHHHHHHHHhCCCHHHEEEECCCHHHHHHHHHCCCEE
Confidence            99999999876 35543 1   00011123334456778889999999985443223455555

>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium}

Probab=97.05  E-value=0.00015  Score=70.19  Aligned_cols=92  Identities=15%  Similarity=0.018  Sum_probs=64.2

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec---------CCCC------CccccCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE---------DFNG------KDRKNPD  178 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd---------~~~~------~~~KdL~  178 (326)
                      +.++||+.++|+.+.+. |.+.|.|++...+++.+++.++.+ .+|.+.+-..+         +...      .+.+-++
T Consensus       255 ~~~~pg~~e~l~~Lk~~G~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~dg~~tg~~~~~v~~~kpk~~~~~~~~~  333 (415)
T 3p96_A          255 LELMPGARTTLRTLRRLGYACGVVSGGFRRIIEPLAEELMLD-YVAANELEIVDGTLTGRVVGPIIDRAGKATALREFAQ  333 (415)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCS-EEEEECEEEETTEEEEEECSSCCCHHHHHHHHHHHHH
T ss_pred             CccCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCcc-ceeeeeEEEeCCEEEeeEccCCCCCcchHHHHHHHHH
Confidence            47999999999999877 999999999999999999999886 56654331111         1110      1222344


Q ss_pred             CCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          179 LVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       179 ~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      .++.+++.++.|+|+..-.......++.+
T Consensus       334 ~~gi~~~~~i~vGD~~~Di~~a~~aG~~v  362 (415)
T 3p96_A          334 RAGVPMAQTVAVGDGANDIDMLAAAGLGI  362 (415)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEE
T ss_pred             HcCcChhhEEEEECCHHHHHHHHHCCCeE
Confidence            56778899999999985443223344444

>2r8e_A 3-deoxy-D-manno-octulosonate 8-phosphate phosphatase; YRBI, divalent metal, HAD superfamily, KDO 8-P, hydrolase; 1.40A {Escherichia coli O6} PDB: 2r8x_A 2r8y_A 2r8z_A 3hyc_A 3i6b_A*

Probab=96.99  E-value=0.00073  Score=58.06  Aligned_cols=116  Identities=12%  Similarity=0.061  Sum_probs=71.9

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+-..+++|+||||+++...-  ..       .     ...     ...+.++++  .+|+.+.+. +.++|.|++++..
T Consensus        24 ~~ik~vifD~DGTL~~~~~~~--~~-------~-----~~~-----~~~~~~~d~--~~l~~L~~~g~~v~ivT~~~~~~   82 (188)
T 2r8e_A           24 ENIRLLILDVDGVLSDGLIYM--GN-------N-----GEE-----LKAFNVRDG--YGIRCALTSDIEVAIITGRKAKL   82 (188)
T ss_dssp             HTCSEEEECCCCCCBCSEEEE--ET-------T-----SCE-----EEEEEHHHH--HHHHHHHTTTCEEEEECSSCCHH
T ss_pred             hcCCEEEEeCCCCcCCCCEEe--cC-------C-----CcE-----EEEeecccH--HHHHHHHHCCCeEEEEeCCChHH
Confidence            455789999999999854210  00       0     000     011123333  488888766 9999999999999


Q ss_pred             HHHHHHHhCCCCccccceEEeecCCCC-CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058          145 AEAAVKLLDLDSKYFSSRIIAREDFNG-KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       145 A~~v~~~LDP~~~~F~~Ri~sRd~~~~-~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      ++.+++.++.. .+|..     ..... .+.+-++.++.+++.+++|+|+..-.......++.+.
T Consensus        83 ~~~~l~~lgl~-~~~~~-----~kpk~~~~~~~~~~~g~~~~~~~~iGD~~~Di~~a~~ag~~~~  141 (188)
T 2r8e_A           83 VEDRCATLGIT-HLYQG-----QSNKLIAFSDLLEKLAIAPENVAYVGDDLIDWPVMEKVGLSVA  141 (188)
T ss_dssp             HHHHHHHHTCC-EEECS-----CSCSHHHHHHHHHHHTCCGGGEEEEESSGGGHHHHTTSSEEEE
T ss_pred             HHHHHHHcCCc-eeecC-----CCCCHHHHHHHHHHcCCCHHHEEEECCCHHHHHHHHHCCCEEE
Confidence            99999998765 34432     11111 1222234456677899999999854433345566654

>4ap9_A Phosphoserine phosphatase; hydrolase, haloacid dehalogenase superfamily, NDSB; HET: 1PS; 1.78A {Thermococcus onnurineus} PDB: 4b6j_A

Probab=96.94  E-value=0.0003  Score=59.01  Aligned_cols=78  Identities=17%  Similarity=0.061  Sum_probs=54.9

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCC-------CCccccCCCCCCCCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN-------GKDRKNPDLVRGQERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~-------~~~~KdL~~l~~~~~~  186 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+ +.++.. .+|. .+.+.++..       .....-+..+  +++.
T Consensus        78 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~-~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~k~~~l~~l--~~~~  152 (201)
T 4ap9_A           78 VNVSPEARELVETLREKGFKVVLISGSFEEVLEPF-KELGDE-FMAN-RAIFEDGKFQGIRLRFRDKGEFLKRF--RDGF  152 (201)
T ss_dssp             CCCCHHHHHHHHHHHHTTCEEEEEEEEETTTSGGG-TTTSSE-EEEE-EEEEETTEEEEEECCSSCHHHHHGGG--TTSC
T ss_pred             CCCChhHHHHHHHHHHCCCeEEEEeCCcHHHHHHH-HHcCch-hhee-eEEeeCCceECCcCCccCHHHHHHhc--CcCc
Confidence            37899999999999877 99999999999999988 887765 3443 344333211       1111223344  7788


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|.|+..-.
T Consensus       153 ~i~iGD~~~Di  163 (201)
T 4ap9_A          153 ILAMGDGYADA  163 (201)
T ss_dssp             EEEEECTTCCH
T ss_pred             EEEEeCCHHHH
Confidence            99999997533

>2obb_A Hypothetical protein; structural genomics, PSI-2, PR structure initiative, midwest center for structural genomic unknown function; 2.20A {Bacteroides thetaiotaomicron} SCOP: c.108.1.25

Probab=96.90  E-value=0.0048  Score=51.70  Aligned_cols=97  Identities=11%  Similarity=0.170  Sum_probs=60.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+.... +.++                          ..-|++.+.|+.+.+. +.++|+|.-+.....
T Consensus         3 ~k~i~~DlDGTL~~~~~-~~i~--------------------------~~~~~~~~al~~l~~~G~~iii~TgR~~~~~~   55 (142)
T 2obb_A            3 AMTIAVDFDGTIVEHRY-PRIG--------------------------EEIPFAVETLKLLQQEKHRLILWSVREGELLD   55 (142)
T ss_dssp             CCEEEECCBTTTBCSCT-TSCC--------------------------CBCTTHHHHHHHHHHTTCEEEECCSCCHHHHH
T ss_pred             CeEEEEECcCCCCCCCC-cccc--------------------------ccCHHHHHHHHHHHHCCCEEEEEeCCCcccHH
Confidence            35789999999999531 1100                          2458999999999766 999999998876777


Q ss_pred             HHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058          147 AAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       147 ~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      .+.+.++..|--+.  .++-+....  .+-.....+.+.-.++|||+..
T Consensus        56 ~~~~~l~~~gi~~~--~I~~n~P~~--~~~~~~~~rK~~~~~fIDDR~~  100 (142)
T 2obb_A           56 EAIEWCRARGLEFY--AANKDYPEE--ERDHQGFSRKLKADLFIDDRNV  100 (142)
T ss_dssp             HHHHHHHTTTCCCS--EESSSSTTC-----CCSCCSSCCCSEEECTTST
T ss_pred             HHHHHHHHcCCCeE--EEEcCCchh--hhcchhhcCCcCCCEEeecccc
Confidence            77777776653222  332221110  1100112233456677999873

>3l41_A BRCT-containing protein 1; BRC1, BRCT domain, tandem BRCT repeat, phosphoserine binding domain, DNA repair, cell division, mitosis; HET: SEP; 1.45A {Schizosaccharomyces pombe} PDB: 3l40_A*

Probab=96.83  E-value=0.00048  Score=61.93  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=29.4

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      ..|...|++||+|+||.+|...++..||+.|.
T Consensus        54 l~Aia~g~~IVs~~Wl~~~~~~~~~l~e~~y~   85 (220)
T 3l41_A           54 LCSIPYGPCVVTMDWINSCLKTHEIVDEEPYL   85 (220)
T ss_dssp             HHHGGGCCEEECHHHHHHHHHHTSCCCSGGGB
T ss_pred             eecCCCCCeEEEhHHHHhhhhhhhccccCccc
Confidence            35777899999999999999999999999995

>2i33_A Acid phosphatase; HAD superfamily, hydrolase; 1.57A {Bacillus anthracis} PDB: 2i34_A

Probab=96.81  E-value=0.0027  Score=58.00  Aligned_cols=121  Identities=18%  Similarity=0.171  Sum_probs=66.5

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc--
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST--  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~--  141 (326)
                      .++..+||||||||+.+...-    ... . .....+ ...|. ........+.||+.++|+.+.+. +.+.|.|+..  
T Consensus        57 ~~~kavifDlDGTLld~~~~~----~~~-~-~~~~~~-~~~~~~~~~~~~~~~~pg~~e~L~~L~~~Gi~i~iaTnr~~~  129 (258)
T 2i33_A           57 EKKPAIVLDLDETVLDNSPHQ----AMS-V-KTGKGY-PYKWDDWINKAEAEALPGSIDFLKYTESKGVDIYYISNRKTN  129 (258)
T ss_dssp             SSEEEEEECSBTTTEECHHHH----HHH-H-HHSCCT-TTTHHHHHHHCCCEECTTHHHHHHHHHHTTCEEEEEEEEEGG
T ss_pred             CCCCEEEEeCcccCcCCHHHH----HHH-H-hcccch-HHHHHHHHHcCCCCcCccHHHHHHHHHHCCCEEEEEcCCchh
Confidence            567899999999999985210    000 0 000000 00000 00001136789999999999876 9999999998  


Q ss_pred             -HHHHHHHHHHhCCCC-ccccceEEeecCCCCCccccCCC--CCCCCCcEEEEeCCchhh
Q 040058          142 -RCYAEAAVKLLDLDS-KYFSSRIIAREDFNGKDRKNPDL--VRGQERGIVILDDTESVW  197 (326)
Q Consensus       142 -~~YA~~v~~~LDP~~-~~F~~Ri~sRd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~vw  197 (326)
                       +..+...++.++... .+|. -+++.++ ..  .++...  +..+...+++|.|+..=.
T Consensus       130 ~~~~~~~~L~~~Gl~~v~~~~-vi~~~~~-~~--K~~~~~~~~~~~~~~~l~VGDs~~Di  185 (258)
T 2i33_A          130 QLDATIKNLERVGAPQATKEH-ILLQDPK-EK--GKEKRRELVSQTHDIVLFFGDNLSDF  185 (258)
T ss_dssp             GHHHHHHHHHHHTCSSCSTTT-EEEECTT-CC--SSHHHHHHHHHHEEEEEEEESSGGGS
T ss_pred             HHHHHHHHHHHcCCCcCCCce-EEECCCC-CC--CcHHHHHHHHhCCCceEEeCCCHHHh
Confidence             556666677666552 2343 3443332 11  122111  111233488899987533

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=96.75  E-value=0.0013  Score=56.57  Aligned_cols=88  Identities=20%  Similarity=0.225  Sum_probs=67.2

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-----CccccCCCCCCCCCcEEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-----KDRKNPDLVRGQERGIVI  189 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-----~~~KdL~~l~~~~~~vvI  189 (326)
                      +.+.||+.++|+.+.+.|.+.|.|++.+..+..+++.++.. .+|.. +++.+ ...     .+.+-+++++.+++.+++
T Consensus        83 ~~~~~g~~~~l~~L~~~~~l~i~T~~~~~~~~~~l~~~gl~-~~f~~-i~~~~-~~~Kp~p~~~~~~~~~lg~~p~~~~~  159 (210)
T 2ah5_A           83 AQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIH-HFFDG-IYGSS-PEAPHKADVIHQALQTHQLAPEQAII  159 (210)
T ss_dssp             CEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCG-GGCSE-EEEEC-SSCCSHHHHHHHHHHHTTCCGGGEEE
T ss_pred             CCCCCCHHHHHHHHHcCCeEEEEeCCCHHHHHHHHHhcCch-hheee-eecCC-CCCCCChHHHHHHHHHcCCCcccEEE
Confidence            56889999999999878999999999999999999999876 57864 66655 211     144556778888999999


Q ss_pred             EeCCchhhccCCCCeE
Q 040058          190 LDDTESVWSDHTENLI  205 (326)
Q Consensus       190 vDD~~~vw~~~~~N~I  205 (326)
                      |+|++.-.......++
T Consensus       160 vgDs~~Di~~a~~aG~  175 (210)
T 2ah5_A          160 IGDTKFDMLGARETGI  175 (210)
T ss_dssp             EESSHHHHHHHHHHTC
T ss_pred             ECCCHHHHHHHHHCCC
Confidence            9999754432233344

>3skx_A Copper-exporting P-type ATPase B; P1B-ATPase, ATP binding domain, copper(II) transporter, MEMB protein, hydrolase; 1.59A {Archaeoglobus fulgidus} PDB: 3sky_A*

Probab=96.69  E-value=0.0028  Score=56.33  Aligned_cols=72  Identities=19%  Similarity=0.321  Sum_probs=52.5

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~  194 (326)
                      .++||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|.. +++.+...  ..|.+..    .-.++.|.|+.
T Consensus       144 ~~~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~gl~-~~f~~-~~~~~k~~--~~k~~~~----~~~~~~vGD~~  215 (280)
T 3skx_A          144 RIRPESREAISKLKAIGIKCMMLTGDNRFVAKWVAEELGLD-DYFAE-VLPHEKAE--KVKEVQQ----KYVTAMVGDGV  215 (280)
T ss_dssp             EECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS-EEECS-CCGGGHHH--HHHHHHT----TSCEEEEECTT
T ss_pred             CCCHhHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCh-hHhHh-cCHHHHHH--HHHHHHh----cCCEEEEeCCc
Confidence            7999999999999876 999999999999999999999876 46653 44332111  1222211    11678999987


Q ss_pred             h
Q 040058          195 S  195 (326)
Q Consensus       195 ~  195 (326)
                      .
T Consensus       216 n  216 (280)
T 3skx_A          216 N  216 (280)
T ss_dssp             T
T ss_pred             h
Confidence            4

>2gfh_A Haloacid dehalogenase-like hydrolase domain conta; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; 1.90A {Mus musculus} SCOP: c.108.1.6 PDB: 2w4m_A

Probab=96.68  E-value=0.0012  Score=59.35  Aligned_cols=77  Identities=21%  Similarity=0.207  Sum_probs=62.6

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+.+.+.+.|.|++.+.++..+++.++.. .+|.. +++.++...      .+.+-+++++.+++.++
T Consensus       120 ~~~~~g~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~f~~-i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~~  197 (260)
T 2gfh_A          120 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQ-SYFDA-IVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  197 (260)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCG-GGCSE-EEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCcCHHHHHHHHHcCCcEEEEECcChHHHHHHHHhcCHH-hhhhe-EEecCCCCCCCCCHHHHHHHHHHcCCChhhEE
Confidence            46789999999999888999999999999999999999886 67874 666666542      13444566778899999


Q ss_pred             EEeCC
Q 040058          189 ILDDT  193 (326)
Q Consensus       189 IvDD~  193 (326)
                      +|+|+
T Consensus       198 ~vGDs  202 (260)
T 2gfh_A          198 MVGDT  202 (260)
T ss_dssp             EEESC
T ss_pred             EECCC
Confidence            99995

>2nyv_A Pgpase, PGP, phosphoglycolate phosphatase; structural genomics, PSI-2, protein structure initiative; 2.10A {Aquifex aeolicus} PDB: 2yy6_A

Probab=96.53  E-value=0.0024  Score=55.41  Aligned_cols=82  Identities=20%  Similarity=0.283  Sum_probs=63.8

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++.. .+|. .+++.++....      +.+-++.++.+++.
T Consensus        81 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~gl~-~~f~-~i~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~  158 (222)
T 2nyv_A           81 YTKPYPEIPYTLEALKSKGFKLAVVSNKLEELSKKILDILNLS-GYFD-LIVGGDTFGEKKPSPTPVLKTLEILGEEPEK  158 (222)
T ss_dssp             SCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCS-EEECTTSSCTTCCTTHHHHHHHHHHTCCGGG
T ss_pred             cCccCCCHHHHHHHHHHCCCeEEEEcCCCHHHHHHHHHHcCCH-HHhe-EEEecCcCCCCCCChHHHHHHHHHhCCCchh
Confidence            357899999999999876 999999999999999999998865 5776 47766654321      22334456778899


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +++|+|+..-.
T Consensus       159 ~~~vGD~~~Di  169 (222)
T 2nyv_A          159 ALIVGDTDADI  169 (222)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEECCCHHHH
Confidence            99999997533

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=96.52  E-value=0.0026  Score=53.31  Aligned_cols=81  Identities=20%  Similarity=0.222  Sum_probs=64.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +...||+.++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~  165 (214)
T 3e58_A           88 ELIFPDVLKVLNEVKSQGLEIGLASSSVKADIFRALEENRLQ-GFFD-IVLSGEEFKESKPNPEIYLTALKQLNVQASRA  165 (214)
T ss_dssp             HHBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEGGGCSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CCcCchHHHHHHHHHHCCCCEEEEeCCcHHHHHHHHHHcCcH-hhee-eEeecccccCCCCChHHHHHHHHHcCCChHHe
Confidence            46899999999999877 999999999999999999998876 5786 47766665431      233455667888999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|++.-.
T Consensus       166 ~~iGD~~~Di  175 (214)
T 3e58_A          166 LIIEDSEKGI  175 (214)
T ss_dssp             EEEECSHHHH
T ss_pred             EEEeccHhhH
Confidence            9999997533

>3pct_A Class C acid phosphatase; hydrolase, outer membrane; 1.85A {Pasteurella multocida}

Probab=96.50  E-value=0.005  Score=56.69  Aligned_cols=123  Identities=11%  Similarity=0.132  Sum_probs=67.6

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhcccccccccee-eccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLF-QMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-  142 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~-~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-  142 (326)
                      .+|+.+|||+||||+.....-.    ....  ....+....| .....-.....||+.+||+.+.+. ++|+|-|+-+. 
T Consensus        56 g~~~avVfDIDgTlldn~~y~~----~~~~--~~~~f~~~~w~~wv~~g~~~~~pg~~ell~~L~~~G~~i~ivTgR~~~  129 (260)
T 3pct_A           56 GKKKAVVVDLDETMIDNSAYAG----WQVQ--SGQGFSPKTWTKWVDARQSAAIPGAVEFSNYVNANGGTMFFVSNRRDD  129 (260)
T ss_dssp             --CEEEEECCBTTTEECHHHHH----HHHH--HTCCCCHHHHHHHHHTTCCEECTTHHHHHHHHHHTTCEEEEEEEEETT
T ss_pred             CCCCEEEEECCccCcCChhHHH----hhcc--cCCCCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            3456999999999999873210    0000  0000000000 000011247899999999999866 99999998754 


Q ss_pred             ---HHHHHHHHHhCCCCccccceEEeecCCCCC--ccccCCCCCCCCCcEEEEeCCchhh
Q 040058          143 ---CYAEAAVKLLDLDSKYFSSRIIAREDFNGK--DRKNPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       143 ---~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~--~~KdL~~l~~~~~~vvIvDD~~~vw  197 (326)
                         +-+..-++.++-.. ++...++-|.+....  ..+.|...  +.+-++.|.|+..=+
T Consensus       130 ~~r~~T~~~L~~lGi~~-~~~~~Lilr~~~~~K~~~r~~L~~~--gy~iv~~iGD~~~Dl  186 (260)
T 3pct_A          130 VEKAGTVDDMKRLGFTG-VNDKTLLLKKDKSNKSVRFKQVEDM--GYDIVLFVGDNLNDF  186 (260)
T ss_dssp             TSHHHHHHHHHHHTCCC-CSTTTEEEESSCSSSHHHHHHHHTT--TCEEEEEEESSGGGG
T ss_pred             ccHHHHHHHHHHcCcCc-cccceeEecCCCCChHHHHHHHHhc--CCCEEEEECCChHHc
Confidence               57777777776652 343245556543221  11112211  345588888885433

>3qnm_A Haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 1.70A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=96.50  E-value=0.0029  Score=54.26  Aligned_cols=78  Identities=19%  Similarity=0.290  Sum_probs=63.5

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      +.+.|++.++|+.+.+.+.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.++
T Consensus       106 ~~~~~~~~~~l~~l~~g~~~~i~sn~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  183 (240)
T 3qnm_A          106 SGLMPHAKEVLEYLAPQYNLYILSNGFRELQSRKMRSAGVD-RYFK-KIILSEDLGVLKPRPEIFHFALSATQSELRESL  183 (240)
T ss_dssp             CCBSTTHHHHHHHHTTTSEEEEEECSCHHHHHHHHHHHTCG-GGCS-EEEEGGGTTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCccHHHHHHHHHcCCeEEEEeCCchHHHHHHHHHcChH-hhce-eEEEeccCCCCCCCHHHHHHHHHHcCCCcccEE
Confidence            57899999999999977999999999999999999998776 5676 57766665431      3334566788899999


Q ss_pred             EEeCCc
Q 040058          189 ILDDTE  194 (326)
Q Consensus       189 IvDD~~  194 (326)
                      .|+|++
T Consensus       184 ~iGD~~  189 (240)
T 3qnm_A          184 MIGDSW  189 (240)
T ss_dssp             EEESCT
T ss_pred             EECCCc
Confidence            999995

>3ed5_A YFNB; APC60080, bacillus subtilis subsp. subtilis STR. 168, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.72A {Bacillus subtilis} PDB: 3i76_A

Probab=96.48  E-value=0.0036  Score=53.74  Aligned_cols=78  Identities=14%  Similarity=0.087  Sum_probs=63.5

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCC-CCCCcE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVR-GQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~-~~~~~v  187 (326)
                      +...||+.++|+.+.+.+.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++ .+++.+
T Consensus       102 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~~  179 (238)
T 3ed5_A          102 HQLIDGAFDLISNLQQQFDLYIVTNGVSHTQYKRLRDSGLF-PFFK-DIFVSEDTGFQKPMKEYFNYVFERIPQFSAEHT  179 (238)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHTTCG-GGCS-EEEEGGGTTSCTTCHHHHHHHHHTSTTCCGGGE
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcChH-hhhh-eEEEecccCCCCCChHHHHHHHHHcCCCChhHe
Confidence            57899999999999877999999999999999999998766 5786 46666665431      334456788 889999


Q ss_pred             EEEeCCc
Q 040058          188 VILDDTE  194 (326)
Q Consensus       188 vIvDD~~  194 (326)
                      +.|+|+.
T Consensus       180 i~vGD~~  186 (238)
T 3ed5_A          180 LIIGDSL  186 (238)
T ss_dssp             EEEESCT
T ss_pred             EEECCCc
Confidence            9999997

>1rku_A Homoserine kinase; phosphoserine phosphatase, phosphoserine:homoserine phosphotransferase, THRH, phosphoserine phosphoryl donor; 1.47A {Pseudomonas aeruginosa} SCOP: c.108.1.11 PDB: 1rkv_A

Probab=96.47  E-value=0.0013  Score=56.10  Aligned_cols=92  Identities=7%  Similarity=0.035  Sum_probs=65.6

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCC-------C--CccccCCCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN-------G--KDRKNPDLVRGQER  185 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~-------~--~~~KdL~~l~~~~~  185 (326)
                      +.++||+.++|+.+.+.+.+.|.|++.+.+++.+++.++.. .+|.+.+.+.++..       .  .+.+-++.++...+
T Consensus        68 ~~~~~g~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~gl~-~~f~~~~~~~~~~~~~~~~~p~p~~~~~~l~~l~~~~~  146 (206)
T 1rku_A           68 LKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFP-TLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYY  146 (206)
T ss_dssp             CCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCC-CEEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHTTC
T ss_pred             cCCCccHHHHHHHHHhcCcEEEEECChHHHHHHHHHHcCCc-ceecceeEEcCCceEEeeecCCCchHHHHHHHHHhcCC
Confidence            46799999999999877999999999999999999998877 57855566544432       1  12223344455677


Q ss_pred             cEEEEeCCchhhccCCCCeEEe
Q 040058          186 GIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      .+++|+|+..-.......++.+
T Consensus       147 ~~~~iGD~~~Di~~a~~aG~~~  168 (206)
T 1rku_A          147 RVIAAGDSYNDTTMLSEAHAGI  168 (206)
T ss_dssp             EEEEEECSSTTHHHHHHSSEEE
T ss_pred             EEEEEeCChhhHHHHHhcCccE
Confidence            8999999975443223445543

>3sd7_A Putative phosphatase; structural genomics, haloacid dehalogenase-like hydrolase, H center for structural genomics of infectious diseases; HET: PGE; 1.70A {Clostridium difficile}

Probab=96.45  E-value=0.0025  Score=55.41  Aligned_cols=81  Identities=17%  Similarity=0.232  Sum_probs=65.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCC-CCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQ-ERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~-~~~  186 (326)
                      ..++||+.++|+.+.+. +.++|.|++.+.+++.+++.++.. .+|. .+++.++....      +.+-++.++.+ ++.
T Consensus       109 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~g~~~~~~  186 (240)
T 3sd7_A          109 NKIYENMKEILEMLYKNGKILLVATSKPTVFAETILRYFDID-RYFK-YIAGSNLDGTRVNKNEVIQYVLDLCNVKDKDK  186 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCG-GGCS-EEEEECTTSCCCCHHHHHHHHHHHHTCCCGGG
T ss_pred             cccCccHHHHHHHHHHCCCeEEEEeCCcHHHHHHHHHHcCcH-hhEE-EEEeccccCCCCCCHHHHHHHHHHcCCCCCCc
Confidence            57999999999999887 999999999999999999998876 5787 47766766531      22334556777 999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|+|++.-.
T Consensus       187 ~i~vGD~~~Di  197 (240)
T 3sd7_A          187 VIMVGDRKYDI  197 (240)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEECCCHHHH
Confidence            99999998533

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=96.40  E-value=0.0029  Score=55.46  Aligned_cols=80  Identities=10%  Similarity=0.025  Sum_probs=63.8

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+..+..+++.++..  +|. .+++.++....      +.+-+++++.+++.+
T Consensus       109 ~~~~~g~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~--~f~-~~~~~~~~~~~Kp~p~~~~~~~~~l~~~~~~~  185 (240)
T 2hi0_A          109 TGPFPGILDLMKNLRQKGVKLAVVSNKPNEAVQVLVEELFPG--SFD-FALGEKSGIRRKPAPDMTSECVKVLGVPRDKC  185 (240)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHSTT--TCS-EEEEECTTSCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CCcCCCHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCc--cee-EEEecCCCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            57889999999999865 999999999999999999998865  686 47777665421      334455678889999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      ++|+|++.-.
T Consensus       186 ~~vGDs~~Di  195 (240)
T 2hi0_A          186 VYIGDSEIDI  195 (240)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEcCCHHHH
Confidence            9999997433

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=96.38  E-value=0.0024  Score=54.23  Aligned_cols=81  Identities=16%  Similarity=0.151  Sum_probs=63.0

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+.+.+.+.|.|++.+.+++.+++.++.. .+|. .+++.++....      +.+-++.++.+++.++
T Consensus        82 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~KP~~~~~~~~~~~~~~~~~~~i  159 (209)
T 2hdo_A           82 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFM-MRMA-VTISADDTPKRKPDPLPLLTALEKVNVAPQNAL  159 (209)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGG-GGEE-EEECGGGSSCCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             CCcCCCHHHHHHHHHhcCcEEEEeCCCHHHHHHHHHHcChH-hhcc-EEEecCcCCCCCCCcHHHHHHHHHcCCCcccEE
Confidence            57899999999999766999999999999999999988665 5676 47766655321      2333455777889999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      .|+|+..-.
T Consensus       160 ~vGD~~~Di  168 (209)
T 2hdo_A          160 FIGDSVSDE  168 (209)
T ss_dssp             EEESSHHHH
T ss_pred             EECCChhhH
Confidence            999997544

>3s6j_A Hydrolase, haloacid dehalogenase-like family; structural genomics, PSI-2; 2.20A {Pseudomonas syringae PV}

Probab=96.37  E-value=0.0036  Score=53.58  Aligned_cols=82  Identities=16%  Similarity=0.067  Sum_probs=65.0

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      ....||+.++|+.+.+. +.++|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~l~~~~~~~  167 (233)
T 3s6j_A           90 IIALPGAVELLETLDKENLKWCIATSGGIDTATINLKALKLD-INKI-NIVTRDDVSYGKPDPDLFLAAAKKIGAPIDEC  167 (233)
T ss_dssp             CEECTTHHHHHHHHHHTTCCEEEECSSCHHHHHHHHHTTTCC-TTSS-CEECGGGSSCCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             CccCCCHHHHHHHHHHCCCeEEEEeCCchhhHHHHHHhcchh-hhhh-eeeccccCCCCCCChHHHHHHHHHhCCCHHHE
Confidence            57899999999999877 999999999999999999988776 4676 46666655421      334455678889999


Q ss_pred             EEEeCCchhhc
Q 040058          188 VILDDTESVWS  198 (326)
Q Consensus       188 vIvDD~~~vw~  198 (326)
                      +.|+|+..-..
T Consensus       168 i~iGD~~~Di~  178 (233)
T 3s6j_A          168 LVIGDAIWDML  178 (233)
T ss_dssp             EEEESSHHHHH
T ss_pred             EEEeCCHHhHH
Confidence            99999985443

>2hoq_A Putative HAD-hydrolase PH1655; haloacid dehalogenase, structural genomics, NPPSFA, national on protein structural and functional analyses; 1.70A {Pyrococcus horikoshii}

Probab=96.29  E-value=0.0027  Score=55.47  Aligned_cols=78  Identities=17%  Similarity=0.168  Sum_probs=62.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +...||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~  170 (241)
T 2hoq_A           93 LREVPGARKVLIRLKELGYELGIITDGNPVKQWEKILRLELD-DFFE-HVIISDFEGVKKPHPKIFKKALKAFNVKPEEA  170 (241)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEECSCHHHHHHHHHHTTCG-GGCS-EEEEGGGGTCCTTCHHHHHHHHHHHTCCGGGE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEECCCchhHHHHHHHcCcH-hhcc-EEEEeCCCCCCCCCHHHHHHHHHHcCCCcccE
Confidence            46789999999999876 999999999999999999998876 5786 46666655421      233345667788999


Q ss_pred             EEEeCCc
Q 040058          188 VILDDTE  194 (326)
Q Consensus       188 vIvDD~~  194 (326)
                      +.|+|+.
T Consensus       171 i~iGD~~  177 (241)
T 2hoq_A          171 LMVGDRL  177 (241)
T ss_dssp             EEEESCT
T ss_pred             EEECCCc
Confidence            9999997

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=96.28  E-value=0.0039  Score=53.75  Aligned_cols=79  Identities=9%  Similarity=0.039  Sum_probs=62.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        94 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  171 (232)
T 1zrn_A           94 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFD-HLLSVDPVQVYKPDNRVYELAEQALGLDRSAI  171 (232)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEESGGGTCCTTSHHHHHHHHHHHTSCGGGE
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhcChH-hhhh-eEEEecccCCCCCCHHHHHHHHHHcCCCcccE
Confidence            46889999999999876 999999999999999999998876 5676 47666654421      223345567788999


Q ss_pred             EEEeCCch
Q 040058          188 VILDDTES  195 (326)
Q Consensus       188 vIvDD~~~  195 (326)
                      ++|+|+..
T Consensus       172 ~~iGD~~~  179 (232)
T 1zrn_A          172 LFVASNAW  179 (232)
T ss_dssp             EEEESCHH
T ss_pred             EEEeCCHH
Confidence            99999983

>2hsz_A Novel predicted phosphatase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: UNL; 1.90A {Haemophilus somnus 129PT} SCOP: c.108.1.6

Probab=96.23  E-value=0.0057  Score=53.85  Aligned_cols=80  Identities=14%  Similarity=0.127  Sum_probs=62.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus       113 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~  190 (243)
T 2hsz_A          113 SRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFS-EMLGGQSLPEIKPHPAPFYYLCGKFGLYPKQI  190 (243)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCS-EEECTTTSSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CccCCCHHHHHHHHHHCCCEEEEEECCcHHHHHHHHHHcCch-heEE-EEEecccCCCCCcCHHHHHHHHHHhCcChhhE
Confidence            47889999999999876 999999999999999999998765 5676 47766655421      122344567788899


Q ss_pred             EEEeCCchh
Q 040058          188 VILDDTESV  196 (326)
Q Consensus       188 vIvDD~~~v  196 (326)
                      ++|+|+..-
T Consensus       191 ~~vGD~~~D  199 (243)
T 2hsz_A          191 LFVGDSQND  199 (243)
T ss_dssp             EEEESSHHH
T ss_pred             EEEcCCHHH
Confidence            999999743

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=96.19  E-value=0.0039  Score=53.84  Aligned_cols=81  Identities=17%  Similarity=0.079  Sum_probs=64.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.++|.|++.+.+++.+++.++-. .+|. .+++.++....      +.+-+++++.+++.+
T Consensus       103 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~~  180 (237)
T 4ex6_A          103 RLLYPGVLEGLDRLSAAGFRLAMATSKVEKAARAIAELTGLD-TRLT-VIAGDDSVERGKPHPDMALHVARGLGIPPERC  180 (237)
T ss_dssp             GGBCTTHHHHHHHHHHTTEEEEEECSSCHHHHHHHHHHHTGG-GTCS-EEECTTTSSSCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             CccCCCHHHHHHHHHhCCCcEEEEcCCChHHHHHHHHHcCch-hhee-eEEeCCCCCCCCCCHHHHHHHHHHcCCCHHHe
Confidence            45899999999999886 999999999999999999998866 5676 47766654421      233455678889999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|+..-.
T Consensus       181 i~vGD~~~Di  190 (237)
T 4ex6_A          181 VVIGDGVPDA  190 (237)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEcCCHHHH
Confidence            9999998533

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=96.18  E-value=0.0029  Score=54.09  Aligned_cols=81  Identities=12%  Similarity=0.151  Sum_probs=64.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        85 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  162 (226)
T 3mc1_A           85 NKVYDGIEALLSSLKDYGFHLVVATSKPTVFSKQILEHFKLA-FYFD-AIVGSSLDGKLSTKEDVIRYAMESLNIKSDDA  162 (226)
T ss_dssp             CCBCTTHHHHHHHHHHHTCEEEEEEEEEHHHHHHHHHHTTCG-GGCS-EEEEECTTSSSCSHHHHHHHHHHHHTCCGGGE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCH-hhee-eeeccCCCCCCCCCHHHHHHHHHHhCcCcccE
Confidence            46899999999999876 999999999999999999998876 5776 47766665431      233455677788899


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|+..-.
T Consensus       163 i~iGD~~~Di  172 (226)
T 3mc1_A          163 IMIGDREYDV  172 (226)
T ss_dssp             EEEESSHHHH
T ss_pred             EEECCCHHHH
Confidence            9999998544

>4eek_A Beta-phosphoglucomutase-related protein; hydrolase, magnesium binding site, enzyme function initiativ; 1.60A {Deinococcus radiodurans} PDB: 4eel_A* 4een_A

Probab=96.14  E-value=0.0027  Score=55.92  Aligned_cols=83  Identities=11%  Similarity=-0.039  Sum_probs=65.6

Q ss_pred             EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCC-CC------ccccCCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN-GK------DRKNPDLVRGQER  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~-~~------~~KdL~~l~~~~~  185 (326)
                      .....||+.++|+.+.+ .+.+.|.|++.+.++..+++.++.. .+|...+++.++.. ..      +.+-++.++.+++
T Consensus       108 ~~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~l~~~~l~-~~f~~~i~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~  186 (259)
T 4eek_A          108 GVTAIEGAAETLRALRAAGVPFAIGSNSERGRLHLKLRVAGLT-ELAGEHIYDPSWVGGRGKPHPDLYTFAAQQLGILPE  186 (259)
T ss_dssp             TCEECTTHHHHHHHHHHHTCCEEEECSSCHHHHHHHHHHTTCH-HHHCSCEECGGGGTTCCTTSSHHHHHHHHHTTCCGG
T ss_pred             cCCcCccHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHhcChH-hhccceEEeHhhcCcCCCCChHHHHHHHHHcCCCHH
Confidence            35789999999999987 4999999999999999999998876 57875477666654 21      2334556788899


Q ss_pred             cEEEEeCCchhh
Q 040058          186 GIVILDDTESVW  197 (326)
Q Consensus       186 ~vvIvDD~~~vw  197 (326)
                      .++.|+|+..-.
T Consensus       187 ~~i~iGD~~~Di  198 (259)
T 4eek_A          187 RCVVIEDSVTGG  198 (259)
T ss_dssp             GEEEEESSHHHH
T ss_pred             HEEEEcCCHHHH
Confidence            999999998544

>3ocu_A Lipoprotein E; hydrolase, outer membrane; HET: NMN; 1.35A {Haemophilus influenzae} PDB: 3ocv_A* 3ocw_A* 3ocx_A* 3ocz_A* 3ocy_A* 3sf0_A* 2hlk_A 2hll_A 3et4_A 3et5_A

Probab=96.12  E-value=0.012  Score=54.22  Aligned_cols=123  Identities=14%  Similarity=0.115  Sum_probs=68.5

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceee-ccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH-
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQ-MANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR-  142 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~-~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~-  142 (326)
                      .+|..+|||+||||+.....-.   + ....  ...+....|. ....-.....||+.+||+.+.+. ++|+|-|+.+. 
T Consensus        56 ~~~~avVfDIDgTlldn~~y~~---~-~~~~--~~~f~~~~w~~wv~~~~~~~~pG~~ell~~L~~~G~ki~ivTgR~~~  129 (262)
T 3ocu_A           56 GKKKAVVADLNETMLDNSPYAG---W-QVQN--NKPFDGKDWTRWVDARQSRAVPGAVEFNNYVNSHNGKVFYVTNRKDS  129 (262)
T ss_dssp             TCEEEEEECCBTTTEECHHHHH---H-HHHH--TCCCCHHHHHHHHHHTCCEECTTHHHHHHHHHHTTEEEEEEEEEETT
T ss_pred             CCCeEEEEECCCcCCCCchhhh---h-hccc--cccCCHHHHHHHHHcCCCCCCccHHHHHHHHHHCCCeEEEEeCCCcc
Confidence            6778999999999999873100   0 0000  0000000000 00011247899999999999766 99999998754 


Q ss_pred             ---HHHHHHHHHhCCCCccccceEEeecCCCCC--ccccCCCCCCCCCcEEEEeCCchhh
Q 040058          143 ---CYAEAAVKLLDLDSKYFSSRIIAREDFNGK--DRKNPDLVRGQERGIVILDDTESVW  197 (326)
Q Consensus       143 ---~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~--~~KdL~~l~~~~~~vvIvDD~~~vw  197 (326)
                         .-+..-++.++-.. ++...|+-|......  ..+.|...  +.+.++.|.|...=+
T Consensus       130 ~~r~~T~~~L~~lGi~~-~~~~~Lilr~~~~~K~~~r~~l~~~--Gy~iv~~vGD~~~Dl  186 (262)
T 3ocu_A          130 TEKSGTIDDMKRLGFNG-VEESAFYLKKDKSAKAARFAEIEKQ--GYEIVLYVGDNLDDF  186 (262)
T ss_dssp             TTHHHHHHHHHHHTCSC-CSGGGEEEESSCSCCHHHHHHHHHT--TEEEEEEEESSGGGG
T ss_pred             chHHHHHHHHHHcCcCc-ccccceeccCCCCChHHHHHHHHhc--CCCEEEEECCChHHh
Confidence               56666677776542 333356667554321  11111111  234578888875433

>3olc_X DNA topoisomerase 2-binding protein 1; BRCT domain, DNA repair, RAD9, DNA binding protein; HET: DNA; 2.40A {Homo sapiens} PDB: 2xnk_A* 2xnh_A*

Probab=95.96  E-value=0.011  Score=55.39  Aligned_cols=52  Identities=12%  Similarity=0.132  Sum_probs=41.3

Q ss_pred             ccC-CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHhcCC
Q 040058          270 SEF-SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLWRRR  319 (326)
Q Consensus       270 ~~v-~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w~r~  319 (326)
                      ... +|+.|+|||+.|.   .+..+++                          .+.|.+.|++||+|.||.+|...-+..
T Consensus       103 ~~~l~g~~~~~tG~~~~~r~~l~~~i~~~GG~v~~~~t~~tTHLI~~~~~t~Ky~~A~~~gi~IV~~~Wl~~c~~~~~~~  182 (298)
T 3olc_X          103 NMVMSDVTISCTSLEKEKREEVHKYVQMMGGRVYRDLNVSVTHLIAGEVGSKKYLVAANLKKPILLPSWIKTLWEKSQEK  182 (298)
T ss_dssp             CCTTTTCEEEEESCCHHHHHHHHHHHHHTTCEECSSCCTTCCEEEESSSCSHHHHHHHHTTCCEECHHHHHHHHHHHHTT
T ss_pred             ccccCCeEEEeCCCcHHhHHHHHHHHHHCCCEEecCcCCCeeEEEEeCCCChHHHHHHHCCCeEeeHHHHHHHHHcCCcC
Confidence            346 9999999999886   5555555                          256888999999999999998877655


Q ss_pred             CC
Q 040058          320 PE  321 (326)
Q Consensus       320 ~E  321 (326)
                      +.
T Consensus       183 ~~  184 (298)
T 3olc_X          183 KI  184 (298)
T ss_dssp             CC
T ss_pred             Cc
Confidence            44

>2zg6_A Putative uncharacterized protein ST2620, probable 2-haloalkanoic; probable 2-haloalkanoic acid dehalogenase, hydrolase, structural genomics; 2.40A {Sulfolobus tokodaii}

Probab=95.94  E-value=0.0073  Score=52.14  Aligned_cols=89  Identities=16%  Similarity=0.088  Sum_probs=59.6

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      ..+.+.||+.++|+.+.+. +.+.|.|++.+ ++..+++.++.. .+|.. +++.++...      .+.+-+++++.++ 
T Consensus        92 ~~~~~~~~~~~~l~~l~~~g~~~~i~Tn~~~-~~~~~l~~~gl~-~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~-  167 (220)
T 2zg6_A           92 GEAFLYDDTLEFLEGLKSNGYKLALVSNASP-RVKTLLEKFDLK-KYFDA-LALSYEIKAVKPNPKIFGFALAKVGYPA-  167 (220)
T ss_dssp             EEEEECTTHHHHHHHHHTTTCEEEECCSCHH-HHHHHHHHHTCG-GGCSE-EC-----------CCHHHHHHHHHCSSE-
T ss_pred             cCceECcCHHHHHHHHHHCCCEEEEEeCCcH-HHHHHHHhcCcH-hHeeE-EEeccccCCCCCCHHHHHHHHHHcCCCe-
Confidence            3578999999999999876 99999999987 588999988876 57864 665665432      1223344455444 


Q ss_pred             cEEEEeCCch-hhccCCCCeEEe
Q 040058          186 GIVILDDTES-VWSDHTENLIVL  207 (326)
Q Consensus       186 ~vvIvDD~~~-vw~~~~~N~I~I  207 (326)
                        ++|+|++. -.......++.+
T Consensus       168 --~~vgD~~~~Di~~a~~aG~~~  188 (220)
T 2zg6_A          168 --VHVGDIYELDYIGAKRSYVDP  188 (220)
T ss_dssp             --EEEESSCCCCCCCSSSCSEEE
T ss_pred             --EEEcCCchHhHHHHHHCCCeE
Confidence              99999986 444344556554

>1yns_A E-1 enzyme; hydrolase fold; HET: HPO; 1.70A {Homo sapiens} SCOP: c.108.1.22 PDB: 1zs9_A

Probab=95.91  E-value=0.0049  Score=55.64  Aligned_cols=80  Identities=11%  Similarity=0.052  Sum_probs=61.9

Q ss_pred             EEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHhC---CCCccccceEEeecCCCCC-----ccccCCCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLLD---LDSKYFSSRIIAREDFNGK-----DRKNPDLVRGQER  185 (326)
Q Consensus       115 vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~LD---P~~~~F~~Ri~sRd~~~~~-----~~KdL~~l~~~~~  185 (326)
                      +.+.||+.++|+.+.+ .+.+.|.|++.+.+++.+++.++   .. .+|. .+++. +....     +.+-+++++.+++
T Consensus       129 ~~~~~g~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~l~~~~~~~l~-~~fd-~i~~~-~~~~KP~p~~~~~~~~~lg~~p~  205 (261)
T 1yns_A          129 AEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEGDIL-ELVD-GHFDT-KIGHKVESESYRKIADSIGCSTN  205 (261)
T ss_dssp             BCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTBCCG-GGCS-EEECG-GGCCTTCHHHHHHHHHHHTSCGG
T ss_pred             cccCcCHHHHHHHHHhCCCeEEEEeCCCHHHHHHHHHhhcccChH-hhcc-EEEec-CCCCCCCHHHHHHHHHHhCcCcc
Confidence            6789999999999975 59999999999999999998654   33 5787 47766 44321     3444566788899


Q ss_pred             cEEEEeCCchhh
Q 040058          186 GIVILDDTESVW  197 (326)
Q Consensus       186 ~vvIvDD~~~vw  197 (326)
                      .+|+|+|+..-.
T Consensus       206 ~~l~VgDs~~di  217 (261)
T 1yns_A          206 NILFLTDVTREA  217 (261)
T ss_dssp             GEEEEESCHHHH
T ss_pred             cEEEEcCCHHHH
Confidence            999999997433

>3u26_A PF00702 domain protein; structural genomics, PSI-biology, northeast structural genom consortium, NESG, unknown function; 1.59A {Pyrococcus horikoshii} SCOP: c.108.1.1 PDB: 1x42_A

Probab=95.84  E-value=0.0044  Score=53.12  Aligned_cols=78  Identities=18%  Similarity=0.068  Sum_probs=62.3

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      ....|++.++|+.+.+.+.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.++
T Consensus        99 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (234)
T 3u26_A           99 GELYPEVVEVLKSLKGKYHVGMITDSDTEQAMAFLDALGIK-DLFD-SITTSEEAGFFKPHPRIFELALKKAGVKGEEAV  176 (234)
T ss_dssp             CCBCTTHHHHHHHHTTTSEEEEEESSCHHHHHHHHHHTTCG-GGCS-EEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCcCcCHHHHHHHHHhCCcEEEEECCCHHHHHHHHHHcCcH-HHcc-eeEeccccCCCCcCHHHHHHHHHHcCCCchhEE
Confidence            46889999999999877999999999999999999998876 5676 46666654321      3334456778899999


Q ss_pred             EEeCCc
Q 040058          189 ILDDTE  194 (326)
Q Consensus       189 IvDD~~  194 (326)
                      .|+|+.
T Consensus       177 ~vGD~~  182 (234)
T 3u26_A          177 YVGDNP  182 (234)
T ss_dssp             EEESCT
T ss_pred             EEcCCc
Confidence            999997

>4dcc_A Putative haloacid dehalogenase-like hydrolase; magnesium binding site, enzyme function initiativ; 1.65A {Bacteroides thetaiotaomicron} PDB: 4dfd_A 4f71_A 4f72_A

Probab=95.83  E-value=0.0041  Score=53.93  Aligned_cols=93  Identities=12%  Similarity=0.024  Sum_probs=66.7

Q ss_pred             EeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHh---CCCC--ccccceEEeecCCCC------CccccCCCCCCCC
Q 040058          116 KLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLL---DLDS--KYFSSRIIAREDFNG------KDRKNPDLVRGQE  184 (326)
Q Consensus       116 klRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~L---DP~~--~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~  184 (326)
                      .+.||+.++|+.+.+.+.+.|.|++.+.++..+++.|   ...|  .+|. .+++.++...      .+.+-++.++.++
T Consensus       112 ~~~~~~~~~l~~l~~~~~~~i~Sn~~~~~~~~~~~~l~~~~~~~l~~~fd-~i~~~~~~~~~KP~~~~~~~~~~~~g~~~  190 (229)
T 4dcc_A          112 DIPTYKLDLLLKLREKYVVYLLSNTNDIHWKWVCKNAFPYRTFKVEDYFE-KTYLSYEMKMAKPEPEIFKAVTEDAGIDP  190 (229)
T ss_dssp             CCCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHTSCBTTBCHHHHCS-EEEEHHHHTCCTTCHHHHHHHHHHHTCCG
T ss_pred             hccHHHHHHHHHHHhcCcEEEEECCChHHHHHHHhhhhhhccCCHHHhCC-EEEeecccCCCCCCHHHHHHHHHHcCCCH
Confidence            4679999999999877999999999999999888776   4333  3566 4666665432      1334456678889


Q ss_pred             CcEEEEeCCchhhccCCCCeEEeCc
Q 040058          185 RGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       185 ~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      +.+++|+|++.-.......++.+--
T Consensus       191 ~~~~~vGD~~~Di~~a~~aG~~~i~  215 (229)
T 4dcc_A          191 KETFFIDDSEINCKVAQELGISTYT  215 (229)
T ss_dssp             GGEEEECSCHHHHHHHHHTTCEEEC
T ss_pred             HHeEEECCCHHHHHHHHHcCCEEEE
Confidence            9999999998544333345554433

>1qyi_A ZR25, hypothetical protein; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG; 2.50A {Staphylococcus aureus subsp} SCOP: c.108.1.13

Probab=95.81  E-value=0.0052  Score=59.57  Aligned_cols=82  Identities=13%  Similarity=0.077  Sum_probs=63.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCcccc-ceEEeecCC-------------CC----Cccc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFS-SRIIAREDF-------------NG----KDRK  175 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~-~Ri~sRd~~-------------~~----~~~K  175 (326)
                      +.+.||+.++|+.+.+. |.+.|.|++.+.++..+++.++-. .+|. +.+++.++.             ..    .+.+
T Consensus       214 ~~l~pGv~elL~~Lk~~Gi~laIvTn~~~~~~~~~L~~lgL~-~~Fd~~~Ivs~ddv~~~~~~~~~~kp~~KP~P~~~~~  292 (384)
T 1qyi_A          214 LRPVDEVKVLLNDLKGAGFELGIATGRPYTETVVPFENLGLL-PYFEADFIATASDVLEAENMYPQARPLGKPNPFSYIA  292 (384)
T ss_dssp             SSCHHHHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCG-GGSCGGGEECHHHHHHHHHHSTTSCCCCTTSTHHHHH
T ss_pred             CCcCcCHHHHHHHHHhCCCEEEEEeCCcHHHHHHHHHHcCCh-HhcCCCEEEecccccccccccccccCCCCCCHHHHHH
Confidence            46889999999999877 999999999999999999998876 5787 268876653             11    1233


Q ss_pred             cCCCCC--------------CCCCcEEEEeCCchhh
Q 040058          176 NPDLVR--------------GQERGIVILDDTESVW  197 (326)
Q Consensus       176 dL~~l~--------------~~~~~vvIvDD~~~vw  197 (326)
                      -++.++              .+++.+++|+|++.-.
T Consensus       293 a~~~lg~~~~~~~~~~~~~~v~p~e~l~VGDs~~Di  328 (384)
T 1qyi_A          293 ALYGNNRDKYESYINKQDNIVNKDDVFIVGDSLADL  328 (384)
T ss_dssp             HHHCCCGGGHHHHHHCCTTCSCTTTEEEEESSHHHH
T ss_pred             HHHHcCCccccccccccccCCCCcCeEEEcCCHHHH
Confidence            344555              5788999999998543

>2nte_A BARD-1, BRCA1-associated ring domain protein 1; BRCT, ring finger, zinc-binding protein, ubiquitin LI antitumor protein; 1.90A {Homo sapiens} PDB: 3fa2_A 2r1z_A

Probab=95.77  E-value=0.0048  Score=54.23  Aligned_cols=32  Identities=13%  Similarity=0.184  Sum_probs=28.8

Q ss_pred             HhhhCCceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          295 FLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       295 ~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      .|...|++||+|+||.+|...+++.||+.|.+
T Consensus        55 ~a~~~g~~IV~~~Wl~~c~~~~~~~~e~~y~~   86 (210)
T 2nte_A           55 LGILNGCWILKFEWVKACLRRKVCEQEEKYEI   86 (210)
T ss_dssp             HHHHTTCEEEETHHHHHHHHHTSCCCGGGTBC
T ss_pred             HHHhcCCEEecHHHHHHHHHcCCcCChhhccC
Confidence            46667999999999999999999999999953

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=95.75  E-value=0.0079  Score=51.51  Aligned_cols=89  Identities=25%  Similarity=0.153  Sum_probs=64.7

Q ss_pred             EEEeCccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC-------ccccCCCCC--C
Q 040058          114 LVKLRPFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK-------DRKNPDLVR--G  182 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~-------~~KdL~~l~--~  182 (326)
                      .+...||+.++|+.+.+.  +.+.|.|++.+.++..+++.++.. .+|.. +++.++....       +.+-++.++  .
T Consensus        91 ~~~~~~~~~~~l~~l~~~~g~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~-~~~~~~~~~~~k~~~~~~~~~~~~lg~~~  168 (234)
T 2hcf_A           91 DITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID-HYFPF-GAFADDALDRNELPHIALERARRMTGANY  168 (234)
T ss_dssp             GEEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS-TTCSC-EECTTTCSSGGGHHHHHHHHHHHHHCCCC
T ss_pred             CCCcCCCHHHHHHHHHhCCCceEEEEcCCcHHHHHHHHHHCCch-hhcCc-ceecCCCcCccchHHHHHHHHHHHhCCCC
Confidence            367899999999999876  999999999999999999998876 46764 4444444321       112234566  6


Q ss_pred             CCCcEEEEeCCchhhccCCCCe
Q 040058          183 QERGIVILDDTESVWSDHTENL  204 (326)
Q Consensus       183 ~~~~vvIvDD~~~vw~~~~~N~  204 (326)
                      +++.++.|+|++.-.......+
T Consensus       169 ~~~~~i~iGD~~~Di~~a~~aG  190 (234)
T 2hcf_A          169 SPSQIVIIGDTEHDIRCARELD  190 (234)
T ss_dssp             CGGGEEEEESSHHHHHHHHTTT
T ss_pred             CcccEEEECCCHHHHHHHHHCC
Confidence            8899999999985443223344

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=95.71  E-value=0.0046  Score=52.57  Aligned_cols=79  Identities=14%  Similarity=0.149  Sum_probs=61.6

Q ss_pred             EEEeCccHHHHHHHhhc--CceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-CccccCCCCCCCCCcEEEE
Q 040058          114 LVKLRPFVRTFLEQASS--LVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-KDRKNPDLVRGQERGIVIL  190 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~--~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-~~~KdL~~l~~~~~~vvIv  190 (326)
                      .+.+.||+.++|+.+.+  .+.+.|.|++.+.++..+++.+... .+|.. +++...... .+.+-++.++.+++.++.|
T Consensus       103 ~~~~~~~~~~~l~~l~~~g~~~~~i~t~~~~~~~~~~l~~~~~~-~~f~~-~~~~~kpk~~~~~~~~~~lgi~~~~~i~i  180 (234)
T 3ddh_A          103 PIELLPGVKETLKTLKETGKYKLVVATKGDLLDQENKLERSGLS-PYFDH-IEVMSDKTEKEYLRLLSILQIAPSELLMV  180 (234)
T ss_dssp             CCCBCTTHHHHHHHHHHHCCCEEEEEEESCHHHHHHHHHHHTCG-GGCSE-EEEESCCSHHHHHHHHHHHTCCGGGEEEE
T ss_pred             cCCcCccHHHHHHHHHhCCCeEEEEEeCCchHHHHHHHHHhCcH-hhhhe-eeecCCCCHHHHHHHHHHhCCCcceEEEE
Confidence            35789999999999987  6999999999999999999998876 56764 554432221 2344455678889999999


Q ss_pred             eCCc
Q 040058          191 DDTE  194 (326)
Q Consensus       191 DD~~  194 (326)
                      +|+.
T Consensus       181 GD~~  184 (234)
T 3ddh_A          181 GNSF  184 (234)
T ss_dssp             ESCC
T ss_pred             CCCc
Confidence            9996

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3

Probab=95.67  E-value=0.0043  Score=55.00  Aligned_cols=33  Identities=9%  Similarity=0.081  Sum_probs=29.7

Q ss_pred             HHHhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          293 EKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       293 a~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      ...|...|++||+|+||.+|+..+++.||+.|.
T Consensus        61 ~~~a~~~g~~IV~~~Wl~~~~~~~~~~~e~~y~   93 (229)
T 1l0b_A           61 YFLGIAGGKWIVSYSWVIKSIQERKLLSVHEFE   93 (229)
T ss_dssp             HHHHHHTTCEEEETHHHHHHHTTTSCCCSGGGB
T ss_pred             HHHHHHCCCcEecHHHHHHHHHCCCcCChHHeE
Confidence            456777899999999999999999999999884

>3al2_A DNA topoisomerase 2-binding protein 1; BRCT domain, protein binding, DNA binding protein; HET: DNA MSE; 2.00A {Homo sapiens} PDB: 3al3_A*

Probab=95.66  E-value=0.015  Score=52.41  Aligned_cols=31  Identities=23%  Similarity=0.286  Sum_probs=27.8

Q ss_pred             HhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          295 FLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       295 ~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      .|...|+.||+|+||.+|...=+..||+.|.
T Consensus        62 ~aia~G~wIvs~~wl~~s~~~g~~l~E~~ye   92 (235)
T 3al2_A           62 ASVAAGKWVLHRSYLEACRTAGHFVQEEDYE   92 (235)
T ss_dssp             HHHHTTCEEECTHHHHHHHHHTSCCCSGGGB
T ss_pred             HHHHcCCcCccHHHHHHHHHcCCCCChhcee
Confidence            3666899999999999999999999999884

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A

Probab=95.63  E-value=0.0046  Score=53.98  Aligned_cols=32  Identities=16%  Similarity=0.174  Sum_probs=28.5

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      ..|...|++||+|+||.+|...+++.||+.|.
T Consensus        59 ~~a~~~g~~IV~~~Wl~~~~~~~~~~~e~~y~   90 (214)
T 1t15_A           59 FLGIAGGKWVVSYFWVTQSIKERKMLNEHDFE   90 (214)
T ss_dssp             HHHHHTTCEEEETHHHHHHHHTTSCCCGGGGB
T ss_pred             HHHHhcCCEEeCHHHHHHHHHCCCcCChHHeE
Confidence            35566799999999999999999999999885

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=95.59  E-value=0.0059  Score=51.41  Aligned_cols=89  Identities=13%  Similarity=0.128  Sum_probs=64.5

Q ss_pred             EeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEEE
Q 040058          116 KLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVI  189 (326)
Q Consensus       116 klRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvI  189 (326)
                      .+.||+.++|+.+.+...++|.|++.+.++..+++.++.. .+|.. +++.++...      .+.+-++.++.+++.+++
T Consensus        86 ~~~~~~~~~l~~l~~~g~~~i~s~~~~~~~~~~l~~~~~~-~~f~~-~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~~~~~  163 (200)
T 3cnh_A           86 QPRPEVLALARDLGQRYRMYSLNNEGRDLNEYRIRTFGLG-EFLLA-FFTSSALGVMKPNPAMYRLGLTLAQVRPEEAVM  163 (200)
T ss_dssp             CBCHHHHHHHHHHTTTSEEEEEECCCHHHHHHHHHHHTGG-GTCSC-EEEHHHHSCCTTCHHHHHHHHHHHTCCGGGEEE
T ss_pred             ccCccHHHHHHHHHHcCCEEEEeCCcHHHHHHHHHhCCHH-Hhcce-EEeecccCCCCCCHHHHHHHHHHcCCCHHHeEE
Confidence            4889999999999766699999999999999999988765 56764 665554322      123334556778899999


Q ss_pred             EeCCchhhccCCCCeEE
Q 040058          190 LDDTESVWSDHTENLIV  206 (326)
Q Consensus       190 vDD~~~vw~~~~~N~I~  206 (326)
                      |+|++.-.......++.
T Consensus       164 vgD~~~Di~~a~~aG~~  180 (200)
T 3cnh_A          164 VDDRLQNVQAARAVGMH  180 (200)
T ss_dssp             EESCHHHHHHHHHTTCE
T ss_pred             eCCCHHHHHHHHHCCCE
Confidence            99998644322333443

>2b82_A APHA, class B acid phosphatase; DDDD acid phosphatase, metallo-ENZ hydrolase; HET: ADN; 1.25A {Escherichia coli} SCOP: c.108.1.12 PDB: 2b8j_A* 2hf7_A 1rmt_A* 1n9k_A 1rmq_A 1n8n_A* 1rmy_A* 2g1a_A* 3cz4_A 2heg_A* 1z5g_A 1z5u_A* 1z88_A 2aut_A

Probab=95.55  E-value=0.0035  Score=55.11  Aligned_cols=37  Identities=16%  Similarity=0.178  Sum_probs=30.6

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHh
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLL  152 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~L  152 (326)
                      ...||+.++|+.+.+. +.+.|.|++.+..++.+++.|
T Consensus        88 ~~~~~~~e~l~~L~~~G~~l~ivTn~~~~~~~~~l~~l  125 (211)
T 2b82_A           88 IPKEVARQLIDMHVRRGDAIFFVTGRSPTKTETVSKTL  125 (211)
T ss_dssp             EECHHHHHHHHHHHHHTCEEEEEECSCCCSSCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHH
Confidence            3578999999999765 999999999887777666654

>3a1c_A Probable copper-exporting P-type ATPase A; ATP-binding, cell membrane, copper transport, hydrolase, ION transport, magnesium, membrane; HET: ACP; 1.85A {Archaeoglobus fulgidus} PDB: 3a1d_A* 3a1e_A* 2b8e_A 2voy_J 2voy_I

Probab=95.50  E-value=0.022  Score=51.92  Aligned_cols=73  Identities=12%  Similarity=0.191  Sum_probs=56.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDT  193 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~  193 (326)
                      ..++||+.++|+.+.+. +.+.|.|++.+..+..+++.++.. .+|.. ++     +....+-++.++.. +.+++|.|+
T Consensus       162 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~-~~f~~-i~-----~~~K~~~~~~l~~~-~~~~~vGDs  233 (287)
T 3a1c_A          162 DTLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD-LVIAE-VL-----PHQKSEEVKKLQAK-EVVAFVGDG  233 (287)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS-EEECS-CC-----TTCHHHHHHHHTTT-CCEEEEECT
T ss_pred             cccchhHHHHHHHHHHCCCeEEEEeCCCHHHHHHHHHHhCCc-eeeee-cC-----hHHHHHHHHHHhcC-CeEEEEECC
Confidence            36899999999999876 999999999999999999999876 46653 33     11123334456666 899999999


Q ss_pred             ch
Q 040058          194 ES  195 (326)
Q Consensus       194 ~~  195 (326)
                      ..
T Consensus       234 ~~  235 (287)
T 3a1c_A          234 IN  235 (287)
T ss_dssp             TT
T ss_pred             HH
Confidence            74

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=95.38  E-value=0.0063  Score=53.38  Aligned_cols=78  Identities=13%  Similarity=0.077  Sum_probs=60.2

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCC-CCccccCCCCCCCCCcEEEEeCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN-GKDRKNPDLVRGQERGIVILDDT  193 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~-~~~~KdL~~l~~~~~~vvIvDD~  193 (326)
                      +.+.||+.++|+.+...+.+.|.|++.+.++..+++.++.. .+|.. +++..... ..+.+-++.++.+++.++.|.|+
T Consensus       111 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~l~-~~f~~-i~~~~kp~~~~~~~~~~~l~~~~~~~i~iGD~  188 (251)
T 2pke_A          111 VEVIAGVREAVAAIAADYAVVLITKGDLFHQEQKIEQSGLS-DLFPR-IEVVSEKDPQTYARVLSEFDLPAERFVMIGNS  188 (251)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEEESCHHHHHHHHHHHSGG-GTCCC-EEEESCCSHHHHHHHHHHHTCCGGGEEEEESC
T ss_pred             CCcCccHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCcH-HhCce-eeeeCCCCHHHHHHHHHHhCcCchhEEEECCC
Confidence            56789999999999966999999999999999999988776 56764 55433211 12334445677888999999999


Q ss_pred             c
Q 040058          194 E  194 (326)
Q Consensus       194 ~  194 (326)
                      .
T Consensus       189 ~  189 (251)
T 2pke_A          189 L  189 (251)
T ss_dssp             C
T ss_pred             c
Confidence            8

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=95.20  E-value=0.019  Score=49.40  Aligned_cols=89  Identities=13%  Similarity=0.208  Sum_probs=61.0

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC-ccccceE--------EeecCCC----CC-----ccc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS-KYFSSRI--------IAREDFN----GK-----DRK  175 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~-~~F~~Ri--------~sRd~~~----~~-----~~K  175 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+++.++... .+|...+        .+.+...    ..     +.+
T Consensus        85 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~gl~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~Kp~~~~~  164 (225)
T 1nnl_A           85 PHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVIKL  164 (225)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCcEEEEeCChHHHHHHHHHHcCCCcccEEeeeEEEcCCCcEecCCCCCcccCCCchHHHHHH
Confidence            57899999999999876 9999999999999999999988763 4776543        2332211    00     111


Q ss_pred             cCCCCCCCCCcEEEEeCCchhhccCCCCeE
Q 040058          176 NPDLVRGQERGIVILDDTESVWSDHTENLI  205 (326)
Q Consensus       176 dL~~l~~~~~~vvIvDD~~~vw~~~~~N~I  205 (326)
                      -++.++.  +.+++|+|++.-.......++
T Consensus       165 ~~~~~~~--~~~~~vGDs~~Di~~a~~ag~  192 (225)
T 1nnl_A          165 LKEKFHF--KKIIMIGDGATDMEACPPADA  192 (225)
T ss_dssp             HHHHHCC--SCEEEEESSHHHHTTTTTSSE
T ss_pred             HHHHcCC--CcEEEEeCcHHhHHHHHhCCe
Confidence            1222333  679999999854443344555

>1wr8_A Phosphoglycolate phosphatase; alpha / beta core domain, HAD superfamily, structural genomi structural genomics/proteomics initiative, RSGI; 1.60A {Pyrococcus horikoshii} SCOP: c.108.1.10

Probab=95.16  E-value=0.035  Score=48.74  Aligned_cols=57  Identities=25%  Similarity=0.262  Sum_probs=44.4

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+.|...+.|+++.+. ..+++.|.-+...+..
T Consensus         4 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~v~i~TGR~~~~~~~   52 (231)
T 1wr8_A            4 KAISIDIDGTITYPNR-------------------------------MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEA   52 (231)
T ss_dssp             CEEEEESTTTTBCTTS-------------------------------CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHH
T ss_pred             eEEEEECCCCCCCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCChhHHHH
Confidence            3689999999998741                               2456677888888654 8889999888888888


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.+....
T Consensus        53 ~~~~l~~~~   61 (231)
T 1wr8_A           53 ASILIGTSG   61 (231)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHcCCCC
Confidence            888887653

>3qxg_A Inorganic pyrophosphatase; hydrolase, magnesium binding site, NEW YORK research center for structural genomics; HET: TLA; 1.24A {Bacteroides thetaiotaomicron} PDB: 3qu2_A* 3qx7_A 3quq_A* 3r9k_A 3qut_A 3qu9_A* 3qu7_A 3qu5_A 3qyp_A 3quc_A 3qub_A 3qu4_A

Probab=95.15  E-value=0.011  Score=51.56  Aligned_cols=81  Identities=10%  Similarity=-0.004  Sum_probs=62.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCcccc-ceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFS-SRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~-~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      ..+.||+.++|+.+.+. +.+.|.|++.+.++..+++. +.. .+|. +.+++.++....      +.+-+++++.+++.
T Consensus       108 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~d~i~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  185 (243)
T 3qxg_A          108 AERMPGAWELLQKVKSEGLTPMVVTGSGQLSLLERLEH-NFP-GMFHKELMVTAFDVKYGKPNPEPYLMALKKGGLKADE  185 (243)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECCCCCHHHHTTHHH-HST-TTCCGGGEECTTTCSSCTTSSHHHHHHHHHTTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEeCCcHHHHHHHHHH-hHH-HhcCcceEEeHHhCCCCCCChHHHHHHHHHcCCCHHH
Confidence            56889999999999877 99999999999999988887 554 5782 247766665421      33445667888999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|+|++.-.
T Consensus       186 ~i~vGD~~~Di  196 (243)
T 3qxg_A          186 AVVIENAPLGV  196 (243)
T ss_dssp             EEEEECSHHHH
T ss_pred             eEEEeCCHHHH
Confidence            99999998533

>3dv9_A Beta-phosphoglucomutase; structural genomics, APC60149, PSI- protein structure initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.72A {Bacteroides vulgatus}

Probab=95.13  E-value=0.0095  Score=51.45  Aligned_cols=81  Identities=9%  Similarity=-0.032  Sum_probs=59.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCcccc-ceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFS-SRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~-~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      ....||+.++|+.+.+. +.+.|.|++.+.++..+++. +-. .+|. +.+++.++....      +.+-++.++.+++.
T Consensus       107 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~-~l~-~~f~~~~~~~~~~~~~~kp~~~~~~~~~~~lg~~~~~  184 (247)
T 3dv9_A          107 AERMPGALEVLTKIKSEGLTPMVVTGSGQTSLLDRLNH-NFP-GIFQANLMVTAFDVKYGKPNPEPYLMALKKGGFKPNE  184 (247)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEECSCC---CHHHHHH-HST-TTCCGGGEECGGGCSSCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CCCCCCHHHHHHHHHHcCCcEEEEcCCchHHHHHHHHh-hHH-HhcCCCeEEecccCCCCCCCCHHHHHHHHHcCCChhh
Confidence            57889999999999877 99999999999999999887 554 5782 247766665421      33345567888999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|+|+..-.
T Consensus       185 ~i~vGD~~~Di  195 (247)
T 3dv9_A          185 ALVIENAPLGV  195 (247)
T ss_dssp             EEEEECSHHHH
T ss_pred             eEEEeCCHHHH
Confidence            99999998433

>2fea_A 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; 2633731, structural genomics, joint center for structural GE JCSG; HET: MSE; 2.00A {Bacillus subtilis} SCOP: c.108.1.20

Probab=95.09  E-value=0.01  Score=52.08  Aligned_cols=91  Identities=10%  Similarity=0.072  Sum_probs=62.8

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCC----------CC----cc-----
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFN----------GK----DR-----  174 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~----------~~----~~-----  174 (326)
                      +.++||+.++|+.+.+. +.++|.|++.+.+++.+++-|.+    | +.+++.++..          ..    ..     
T Consensus        76 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~l~~l~~----~-~~v~~~~~~~~~~~~~~~~~kp~p~~~~~~~~~  150 (236)
T 2fea_A           76 AKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVE----K-DRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGC  150 (236)
T ss_dssp             CCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSC----G-GGEEEEEEECSSSBCEEECTTCCCTTCCSCCSS
T ss_pred             CCCCccHHHHHHHHHhCCCeEEEEeCCcHHHHHHHHhcCCC----C-CeEEeeeeEEcCCceEEecCCCCccccccccCC
Confidence            57899999999999865 99999999999999999983322    2 3466554322          00    11     


Q ss_pred             ---ccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcc
Q 040058          175 ---KNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKY  210 (326)
Q Consensus       175 ---KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y  210 (326)
                         +-++.++.+++.+++|+|+..-.......++.+-.+
T Consensus       151 ~K~~~~~~~~~~~~~~~~vGDs~~Di~~a~~aG~~~~~~  189 (236)
T 2fea_A          151 CKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSDLCFARD  189 (236)
T ss_dssp             CHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCSEEEECH
T ss_pred             cHHHHHHHHhccCCeEEEEeCChHHHHHHHhCCeeeech
Confidence               334456778899999999975443333456655433

>3kc2_A Uncharacterized protein YKR070W; HAD-like, mitochondral protein, PSI, MCSG, structural genomi protein structure initiative; HET: MSE; 1.55A {Saccharomyces cerevisiae} PDB: 3rf6_A*

Probab=95.08  E-value=0.038  Score=52.75  Aligned_cols=57  Identities=19%  Similarity=0.205  Sum_probs=45.9

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc---
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST---  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~---  141 (326)
                      +++..+++|+||||++..                                ..=||+.++|+.+.+. +.+.+.|+++   
T Consensus        11 ~~~~~~l~D~DGvl~~g~--------------------------------~~~p~a~~~l~~l~~~g~~~~~vTNn~~~~   58 (352)
T 3kc2_A           11 SKKIAFAFDIDGVLFRGK--------------------------------KPIAGASDALKLLNRNKIPYILLTNGGGFS   58 (352)
T ss_dssp             -CCEEEEECCBTTTEETT--------------------------------EECTTHHHHHHHHHHTTCCEEEECSCCSSC
T ss_pred             ccCCEEEEECCCeeEcCC--------------------------------eeCcCHHHHHHHHHHCCCEEEEEeCCCCCC
Confidence            467889999999999864                                1339999999999865 8999999875   


Q ss_pred             -HHHHHHHHHHhCC
Q 040058          142 -RCYAEAAVKLLDL  154 (326)
Q Consensus       142 -~~YA~~v~~~LDP  154 (326)
                       +.+|+.+.+.++-
T Consensus        59 ~~~~~~~l~~~lgi   72 (352)
T 3kc2_A           59 ERARTEFISSKLDV   72 (352)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHhcCC
Confidence             7888888865553

>4g9b_A Beta-PGM, beta-phosphoglucomutase; HAD, putative phosphoglucomutase, enzyme function initiative structural genomics, isomerase; 1.70A {Escherichia coli}

Probab=95.08  E-value=0.012  Score=52.00  Aligned_cols=79  Identities=13%  Similarity=0.174  Sum_probs=61.5

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      .+.||+.++|+.+.+. +.+.|.|++.+  +..+++.++.. .+|. .+++.++...      .+.+-+++++.+++.+|
T Consensus        95 ~~~pg~~~ll~~L~~~g~~i~i~t~~~~--~~~~l~~~gl~-~~fd-~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  170 (243)
T 4g9b_A           95 AVLPGIRSLLADLRAQQISVGLASVSLN--APTILAALELR-EFFT-FCADASQLKNSKPDPEIFLAACAGLGVPPQACI  170 (243)
T ss_dssp             GBCTTHHHHHHHHHHTTCEEEECCCCTT--HHHHHHHTTCG-GGCS-EECCGGGCSSCTTSTHHHHHHHHHHTSCGGGEE
T ss_pred             cccccHHHHHHhhhcccccceecccccc--hhhhhhhhhhc-cccc-cccccccccCCCCcHHHHHHHHHHcCCChHHEE
Confidence            4789999999999755 88999988754  67788988876 5786 4776776643      25566778889999999


Q ss_pred             EEeCCchhhc
Q 040058          189 ILDDTESVWS  198 (326)
Q Consensus       189 IvDD~~~vw~  198 (326)
                      +|+|++.-..
T Consensus       171 ~VgDs~~di~  180 (243)
T 4g9b_A          171 GIEDAQAGID  180 (243)
T ss_dssp             EEESSHHHHH
T ss_pred             EEcCCHHHHH
Confidence            9999985443

>2om6_A Probable phosphoserine phosphatase; rossmann fold, B-hairpin, four-helix bundle, structural GENO NPPSFA; 2.20A {Pyrococcus horikoshii}

Probab=95.06  E-value=0.018  Score=49.06  Aligned_cols=76  Identities=8%  Similarity=0.035  Sum_probs=59.8

Q ss_pred             eCccHHHHHHHhhcC-ceEEEEcCCc---HHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          117 LRPFVRTFLEQASSL-VDIYLCTMST---RCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       117 lRPgl~eFL~~ls~~-yEl~IyT~g~---~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      ..|++.++|+.+.+. +.+.|.|++.   +.++..+++.++.. .+|. .+++.++...      .+.+-++.++.+++.
T Consensus       100 ~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  177 (235)
T 2om6_A          100 VLEGTKEALQFVKERGLKTAVIGNVMFWPGSYTRLLLERFGLM-EFID-KTFFADEVLSYKPRKEMFEKVLNSFEVKPEE  177 (235)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEEECCCSSCHHHHHHHHHHTTCG-GGCS-EEEEHHHHTCCTTCHHHHHHHHHHTTCCGGG
T ss_pred             cCccHHHHHHHHHHCCCEEEEEcCCcccchhHHHHHHHhCCcH-HHhh-hheeccccCCCCCCHHHHHHHHHHcCCCccc
Confidence            589999999999876 9999999999   99999999988776 5776 4665554332      123334567888999


Q ss_pred             EEEEeCCc
Q 040058          187 IVILDDTE  194 (326)
Q Consensus       187 vvIvDD~~  194 (326)
                      ++.|+|++
T Consensus       178 ~~~iGD~~  185 (235)
T 2om6_A          178 SLHIGDTY  185 (235)
T ss_dssp             EEEEESCT
T ss_pred             eEEECCCh
Confidence            99999998

>3k1z_A Haloacid dehalogenase-like hydrolase domain-conta protein 3; HDHD3, haloacid dehalogenase-like hydrolase domain containin structural genomics; 1.55A {Homo sapiens}

Probab=95.01  E-value=0.012  Score=52.42  Aligned_cols=91  Identities=10%  Similarity=-0.057  Sum_probs=66.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+. +..+++.++.. .+|. .+++.++...      .+.+-++.++.+++.+
T Consensus       105 ~~~~~~~~~~l~~l~~~g~~~~i~tn~~~~-~~~~l~~~gl~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~g~~~~~~  181 (263)
T 3k1z_A          105 WQVLDGAEDTLRECRTRGLRLAVISNFDRR-LEGILGGLGLR-EHFD-FVLTSEAAGWPKPDPRIFQEALRLAHMEPVVA  181 (263)
T ss_dssp             EEECTTHHHHHHHHHHTTCEEEEEESCCTT-HHHHHHHTTCG-GGCS-CEEEHHHHSSCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             ceECcCHHHHHHHHHhCCCcEEEEeCCcHH-HHHHHHhCCcH-Hhhh-EEEeecccCCCCCCHHHHHHHHHHcCCCHHHE
Confidence            57899999999999876 999999998874 68888888876 5786 4666665432      1334456678889999


Q ss_pred             EEEeCCc-h-hhccCCCCeEEeCc
Q 040058          188 VILDDTE-S-VWSDHTENLIVLGK  209 (326)
Q Consensus       188 vIvDD~~-~-vw~~~~~N~I~I~~  209 (326)
                      ++|+|++ . +-.. ...++.+--
T Consensus       182 ~~vGD~~~~Di~~a-~~aG~~~i~  204 (263)
T 3k1z_A          182 AHVGDNYLCDYQGP-RAVGMHSFL  204 (263)
T ss_dssp             EEEESCHHHHTHHH-HTTTCEEEE
T ss_pred             EEECCCcHHHHHHH-HHCCCEEEE
Confidence            9999996 3 3332 344554443

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=94.99  E-value=0.031  Score=48.12  Aligned_cols=80  Identities=8%  Similarity=-0.047  Sum_probs=57.8

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCC-------CCCc--------cccCCC
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDF-------NGKD--------RKNPDL  179 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~-------~~~~--------~KdL~~  179 (326)
                      .++||+.++|+.+.+. +.++|.|++.+.+++.+++.++.. .+|...+...+..       ...+        .+-++.
T Consensus        92 ~~~~g~~~~l~~l~~~g~~~~ivS~~~~~~~~~~~~~~g~~-~~~~~~~~~~~~~~~g~~~~~~~~~~~K~~~~~~~~~~  170 (232)
T 3fvv_A           92 SLTVQAVDVVRGHLAAGDLCALVTATNSFVTAPIARAFGVQ-HLIATDPEYRDGRYTGRIEGTPSFREGKVVRVNQWLAG  170 (232)
T ss_dssp             GCCHHHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCC-EEEECEEEEETTEEEEEEESSCSSTHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC-EEEEcceEEECCEEeeeecCCCCcchHHHHHHHHHHHH
Confidence            4699999999999865 999999999999999999999876 5666555433221       0000        011223


Q ss_pred             CC---CCCCcEEEEeCCchh
Q 040058          180 VR---GQERGIVILDDTESV  196 (326)
Q Consensus       180 l~---~~~~~vvIvDD~~~v  196 (326)
                      ++   .+++.+++|.|+..=
T Consensus       171 ~~~~~~~~~~~~~vGDs~~D  190 (232)
T 3fvv_A          171 MGLALGDFAESYFYSDSVND  190 (232)
T ss_dssp             TTCCGGGSSEEEEEECCGGG
T ss_pred             cCCCcCchhheEEEeCCHhh
Confidence            45   677889999999743

>3smv_A S-(-)-azetidine-2-carboxylate hydrolase; haloacid dehalogenase superfamily, L-azetidine-2- carboxylate; HET: GOL; 1.38A {Pseudomonas}

Probab=94.98  E-value=0.013  Score=50.02  Aligned_cols=76  Identities=13%  Similarity=0.014  Sum_probs=59.7

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-C-----cccc---CCCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-K-----DRKN---PDLVRGQER  185 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-~-----~~Kd---L~~l~~~~~  185 (326)
                      +...|++.++|+.+.+.+.+.|.|++.+.++..+++.|+   .+|. .+++.++... .     +.+-   ++.++.+++
T Consensus        98 ~~~~~~~~~~l~~l~~~~~~~i~tn~~~~~~~~~l~~l~---~~fd-~i~~~~~~~~~KP~~~~~~~~l~~~~~lgi~~~  173 (240)
T 3smv_A           98 WPAFPDTVEALQYLKKHYKLVILSNIDRNEFKLSNAKLG---VEFD-HIITAQDVGSYKPNPNNFTYMIDALAKAGIEKK  173 (240)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEEEESSCHHHHHHHHTTTC---SCCS-EEEEHHHHTSCTTSHHHHHHHHHHHHHTTCCGG
T ss_pred             CCCCCcHHHHHHHHHhCCeEEEEeCCChhHHHHHHHhcC---CccC-EEEEccccCCCCCCHHHHHHHHHHHHhcCCCch
Confidence            468899999999998889999999999999999887754   4676 4666665442 1     1122   667888999


Q ss_pred             cEEEEeCCc
Q 040058          186 GIVILDDTE  194 (326)
Q Consensus       186 ~vvIvDD~~  194 (326)
                      .++.|+|+.
T Consensus       174 ~~~~vGD~~  182 (240)
T 3smv_A          174 DILHTAESL  182 (240)
T ss_dssp             GEEEEESCT
T ss_pred             hEEEECCCc
Confidence            999999995

>1l6r_A Hypothetical protein TA0175; structural genomics, putative hydrolas midwest center for structural genomics, MCSG, PSI; 1.40A {Thermoplasma acidophilum} SCOP: c.108.1.10 PDB: 1kyt_A

Probab=94.96  E-value=0.022  Score=50.28  Aligned_cols=57  Identities=11%  Similarity=0.042  Sum_probs=47.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+.|...+.|+++.+. +.++|.|.-+...+..
T Consensus         6 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~~l~~l~~~g~~~~i~TGr~~~~~~~   54 (227)
T 1l6r_A            6 RLAAIDVDGNLTDRDR-------------------------------LISTKAIESIRSAEKKGLTVSLLSGNVIPVVYA   54 (227)
T ss_dssp             CEEEEEHHHHSBCTTS-------------------------------CBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred             EEEEEECCCCCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEECCCCcHHHHH
Confidence            4789999999998631                               2667888999999765 8999999999999999


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.++.++
T Consensus        55 ~~~~l~~~~   63 (227)
T 1l6r_A           55 LKIFLGING   63 (227)
T ss_dssp             HHHHHTCCS
T ss_pred             HHHHhCCCC
Confidence            999887654

>3umc_A Haloacid dehalogenase; HY; 2.15A {Pseudomonas aeruginosa}

Probab=94.96  E-value=0.012  Score=51.20  Aligned_cols=79  Identities=5%  Similarity=-0.039  Sum_probs=61.6

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +...|++.++|+.+.+.+.+.|.|++.+.++..+++.++..   |. .+++.++...      .+.+-++.++.+++.++
T Consensus       119 ~~~~~~~~~~l~~l~~~~~~~i~s~~~~~~~~~~l~~~g~~---f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  194 (254)
T 3umc_A          119 LRPWPDTLAGMHALKADYWLAALSNGNTALMLDVARHAGLP---WD-MLLCADLFGHYKPDPQVYLGACRLLDLPPQEVM  194 (254)
T ss_dssp             CEECTTHHHHHHHHTTTSEEEECCSSCHHHHHHHHHHHTCC---CS-EECCHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCCccHHHHHHHHHhcCeEEEEeCCCHHHHHHHHHHcCCC---cc-eEEeecccccCCCCHHHHHHHHHHcCCChHHEE
Confidence            46789999999999888999999999999999999988764   65 4665554332      13344566788899999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      .|+|+..-.
T Consensus       195 ~iGD~~~Di  203 (254)
T 3umc_A          195 LCAAHNYDL  203 (254)
T ss_dssp             EEESCHHHH
T ss_pred             EEcCchHhH
Confidence            999997433

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=94.94  E-value=0.03  Score=47.16  Aligned_cols=81  Identities=17%  Similarity=0.130  Sum_probs=61.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      ....|++.++|+.+.+. +.++|.|++.+.++..+++.++.. .+|.. +++.++....      +.+-++.++.+++.+
T Consensus        93 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~-~~~~~-~~~~~~~~~~kp~~~~~~~~~~~~~i~~~~~  170 (226)
T 1te2_A           93 RPLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFDA-LASAEKLPYSKPHPQVYLDCAAKLGVDPLTC  170 (226)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSE-EEECTTSSCCTTSTHHHHHHHHHHTSCGGGE
T ss_pred             CCcCccHHHHHHHHHHCCCcEEEEeCCcHHHHHHHHHhcCcH-hhCcE-EEeccccCCCCCChHHHHHHHHHcCCCHHHe
Confidence            46789999999999876 999999999999999999988766 56764 6655554321      122234567788999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|+..-.
T Consensus       171 i~iGD~~nDi  180 (226)
T 1te2_A          171 VALEDSVNGM  180 (226)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEeCCHHHH
Confidence            9999998544

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=94.85  E-value=0.023  Score=51.97  Aligned_cols=51  Identities=10%  Similarity=0.077  Sum_probs=35.0

Q ss_pred             cEEEEcCccchHHHHHHHHHHhhhCCceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          275 DVLYFSAIFRDCLWAEQEEKFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       275 ~~ivfs~~~p~~~~~~aea~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      +|+++..--|. .-.+.+.+.....+.++|+|.||.+|+..+++.||++|..
T Consensus       213 THVVv~~~~~r-~~~~~~~~~~~~~~~~iV~~~Wv~dci~~~~~l~E~~Y~i  263 (263)
T 3ii6_X          213 SHVIIGEDHSR-VADFKAFRRTFKRKFKILKESWVTDSIDKCELQEENQYLI  263 (263)
T ss_dssp             CEEEECSCCTT-HHHHHHHHHTCSSCCEEEETHHHHHHHHTTSCCCGGGTBC
T ss_pred             eEEEECCCCcc-HHHHHHHHhhcCCCCEEeChHHHHHHHHcCCcCCHhhCCC
Confidence            68888752221 1111122222335789999999999999999999999964

>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A

Probab=94.84  E-value=0.0023  Score=58.67  Aligned_cols=119  Identities=11%  Similarity=0.000  Sum_probs=70.3

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++|+|+|+-....... ..|.                  ......+.||+.++|+.+.+. +.+.|.|+..+.+++
T Consensus       159 ~~~i~iD~dgtl~~~~~~~~-~~~~------------------~~~~~~~~~g~~e~L~~L~~~g~~~~v~T~k~~~~~~  219 (301)
T 1ltq_A          159 PKAVIFDVDGTLAKMNGRGP-YDLE------------------KCDTDVINPMVVELSKMYALMGYQIVVVSGRESGTKE  219 (301)
T ss_dssp             CEEEEEETBTTTBCCSSCCT-TCGG------------------GGGGCCBCHHHHHHHHHHHHTTCEEEEEECSCCCCSS
T ss_pred             cceEEEeCCCCcccccCCCc-hhhh------------------hccccCCChHHHHHHHHHHHCCCeEEEEeCCCcccch
Confidence            35788999999877643221 0111                  011136889999999999876 999999999988774


Q ss_pred             ---HHHHHhCC-----CCccccceEEeecCCCCC-----ccccCCCCCCCC-CcEEEEeCCchhhccCCCCeEE
Q 040058          147 ---AAVKLLDL-----DSKYFSSRIIAREDFNGK-----DRKNPDLVRGQE-RGIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       147 ---~v~~~LDP-----~~~~F~~Ri~sRd~~~~~-----~~KdL~~l~~~~-~~vvIvDD~~~vw~~~~~N~I~  206 (326)
                         .+++.+.+     .|-.|. -++++++....     +.+-++.++.+. +.+++|+|++.-......+++.
T Consensus       220 ~~~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~~~~~~vgD~~~di~~a~~aG~~  292 (301)
T 1ltq_A          220 DPTKYYRMTRKWVEDIAGVPLV-MQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVE  292 (301)
T ss_dssp             STTHHHHHHHHHHHHTTCCCCS-EEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCC
T ss_pred             hHHHHHHhcccccccccCCCch-heeeccCCCCcHHHHHHHHHHHHHhccccceEEEeCCcHHHHHHHHHcCCe
Confidence               44555100     232465 46766654321     111223344343 3468899998655433334443

>3nas_A Beta-PGM, beta-phosphoglucomutase; PSI, structural genomics, protein structure initiative, NEW research center for structural genomics; 3.00A {Bacillus subtilis}

Probab=94.82  E-value=0.015  Score=49.93  Aligned_cols=75  Identities=17%  Similarity=0.188  Sum_probs=56.1

Q ss_pred             eCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEEE
Q 040058          117 LRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIVI  189 (326)
Q Consensus       117 lRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vvI  189 (326)
                      +.||+.++|+.+.+. +.+.|.|++.+  +..+++.++.. .+|.. +++.++...      .+.+-++.++.+++.+++
T Consensus        93 ~~~~~~~~l~~l~~~g~~~~i~t~~~~--~~~~l~~~gl~-~~f~~-i~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~i~  168 (233)
T 3nas_A           93 LLPGIGRLLCQLKNENIKIGLASSSRN--APKILRRLAII-DDFHA-IVDPTTLAKGKPDPDIFLTAAAMLDVSPADCAA  168 (233)
T ss_dssp             SCTTHHHHHHHHHHTTCEEEECCSCTT--HHHHHHHTTCT-TTCSE-ECCC---------CCHHHHHHHHHTSCGGGEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEcCchh--HHHHHHHcCcH-hhcCE-EeeHhhCCCCCCChHHHHHHHHHcCCCHHHEEE
Confidence            699999999999887 99999999866  88888888876 46763 665555432      133445567888999999


Q ss_pred             EeCCch
Q 040058          190 LDDTES  195 (326)
Q Consensus       190 vDD~~~  195 (326)
                      |+|++.
T Consensus       169 vGDs~~  174 (233)
T 3nas_A          169 IEDAEA  174 (233)
T ss_dssp             EECSHH
T ss_pred             EeCCHH
Confidence            999974

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=94.81  E-value=0.027  Score=46.57  Aligned_cols=80  Identities=18%  Similarity=0.136  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      ...+|++.++|+.+.+. +.+.|+|++...++. +++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        84 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~-~~~~~~~~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~i~~~~~  160 (207)
T 2go7_A           84 VVLMPGAREVLAWADESGIQQFIYTHKGNNAFT-ILKDLGVE-SYFT-EILTSQSGFVRKPSPEAATYLLDKYQLNSDNT  160 (207)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEECSSCTHHHH-HHHHHTCG-GGEE-EEECGGGCCCCTTSSHHHHHHHHHHTCCGGGE
T ss_pred             ceeCcCHHHHHHHHHHCCCeEEEEeCCchHHHH-HHHHcCch-hhee-eEEecCcCCCCCCCcHHHHHHHHHhCCCcccE
Confidence            56899999999999876 999999999999999 99888765 5676 46655544321      122234467788999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|+..-.
T Consensus       161 ~~iGD~~nDi  170 (207)
T 2go7_A          161 YYIGDRTLDV  170 (207)
T ss_dssp             EEEESSHHHH
T ss_pred             EEECCCHHHH
Confidence            9999997433

>1xpj_A Hypothetical protein; structural genomics, MCSG, protein STR initiative, PSI, midwest center for structural genomics, UN function; HET: TLA; 2.30A {Vibrio cholerae} SCOP: c.108.1.18

Probab=94.70  E-value=0.027  Score=45.37  Aligned_cols=62  Identities=24%  Similarity=0.260  Sum_probs=42.3

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH----
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY----  144 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y----  144 (326)
                      .+++||||||+++....       +     .    .         +.+.|+..+.|+.+.+. +.++|.|......    
T Consensus         3 ~i~~DlDGTL~~~~~~~-------~-----~----~---------~~~~~~~~~~l~~l~~~Gi~~~iaTGR~~~~~nG~   57 (126)
T 1xpj_A            3 KLIVDLDGTLTQANTSD-------Y-----R----N---------VLPRLDVIEQLREYHQLGFEIVISTARNMRTYEGN   57 (126)
T ss_dssp             EEEECSTTTTBCCCCSC-------G-----G----G---------CCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTTC
T ss_pred             EEEEecCCCCCCCCCCc-------c-----c----c---------CCCCHHHHHHHHHHHhCCCeEEEEeCCChhhcccc
Confidence            58899999999875321       0     0    0         13568889999998755 8999999765432    


Q ss_pred             --------HHHHHHHhCCCC
Q 040058          145 --------AEAAVKLLDLDS  156 (326)
Q Consensus       145 --------A~~v~~~LDP~~  156 (326)
                              +..+++.+...+
T Consensus        58 ~~~~~~~~~~~i~~~~~~~~   77 (126)
T 1xpj_A           58 VGKINIHTLPIITEWLDKHQ   77 (126)
T ss_dssp             HHHHHHHTHHHHHHHHHHTT
T ss_pred             ccccCHHHHHHHHHHHHHcC
Confidence                    456666665544

>3umg_A Haloacid dehalogenase; defluorinase, hydrolase; 2.25A {Rhodococcus jostii}

Probab=94.60  E-value=0.011  Score=51.13  Aligned_cols=79  Identities=8%  Similarity=-0.054  Sum_probs=60.6

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +...|++.++|+.+.+.+.+.|.|++.+.++..+++.++..   |. .+++.++...      .+.+-++.++.+++.++
T Consensus       115 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~~~~---f~-~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~~  190 (254)
T 3umg_A          115 LTPWPDSVPGLTAIKAEYIIGPLSNGNTSLLLDMAKNAGIP---WD-VIIGSDINRKYKPDPQAYLRTAQVLGLHPGEVM  190 (254)
T ss_dssp             CCBCTTHHHHHHHHHHHSEEEECSSSCHHHHHHHHHHHTCC---CS-CCCCHHHHTCCTTSHHHHHHHHHHTTCCGGGEE
T ss_pred             CcCCcCHHHHHHHHHhCCeEEEEeCCCHHHHHHHHHhCCCC---ee-EEEEcCcCCCCCCCHHHHHHHHHHcCCChHHEE
Confidence            46789999999999877999999999999999999988654   65 3555554332      13334556788899999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      .|+|+..-.
T Consensus       191 ~iGD~~~Di  199 (254)
T 3umg_A          191 LAAAHNGDL  199 (254)
T ss_dssp             EEESCHHHH
T ss_pred             EEeCChHhH
Confidence            999997433

>3qgm_A P-nitrophenyl phosphatase (PHO2); structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE; 2.00A {Archaeoglobus fulgidus} SCOP: c.108.1.0

Probab=94.53  E-value=0.069  Score=47.30  Aligned_cols=56  Identities=13%  Similarity=0.131  Sum_probs=38.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCC---cHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMS---TRC  143 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g---~~~  143 (326)
                      ...+++||||||+++.                                +.-|+..+.|+++.+. ..+++.|..   +..
T Consensus         8 ~kli~~DlDGTLl~~~--------------------------------~~~~~~~~ai~~l~~~Gi~v~l~Tgr~~r~~~   55 (268)
T 3qgm_A            8 KKGYIIDIDGVIGKSV--------------------------------TPIPEGVEGVKKLKELGKKIIFVSNNSTRSRR   55 (268)
T ss_dssp             CSEEEEECBTTTEETT--------------------------------EECHHHHHHHHHHHHTTCEEEEEECCSSSCHH
T ss_pred             CCEEEEcCcCcEECCC--------------------------------EeCcCHHHHHHHHHHcCCeEEEEeCcCCCCHH
Confidence            3578999999999853                                1347788888888765 788888883   233


Q ss_pred             HHHHHHHHhCCC
Q 040058          144 YAEAAVKLLDLD  155 (326)
Q Consensus       144 YA~~v~~~LDP~  155 (326)
                      -..+.++.++..
T Consensus        56 ~~~~~l~~lg~~   67 (268)
T 3qgm_A           56 ILLERLRSFGLE   67 (268)
T ss_dssp             HHHHHHHHTTCC
T ss_pred             HHHHHHHHCCCC
Confidence            333444555543

>3mpo_A Predicted hydrolase of the HAD superfamily; SGX, PSI, structural genomics, protein structure initiative; 2.90A {Lactobacillus brevis} SCOP: c.108.1.0

Probab=94.50  E-value=0.052  Score=48.44  Aligned_cols=56  Identities=21%  Similarity=0.344  Sum_probs=35.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|...+.|+++.+. ..+++.|.-...-+..
T Consensus         6 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~   54 (279)
T 3mpo_A            6 KLIAIDIDGTLLNEKN-------------------------------ELAQATIDAVQAAKAQGIKVVLCTGRPLTGVQP   54 (279)
T ss_dssp             CEEEECC------------------------------------------CHHHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred             EEEEEcCcCCCCCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            5689999999998752                               2445667778877654 8888998888888888


Q ss_pred             HHHHhCCC
Q 040058          148 AVKLLDLD  155 (326)
Q Consensus       148 v~~~LDP~  155 (326)
                      +++.++..
T Consensus        55 ~~~~l~~~   62 (279)
T 3mpo_A           55 YLDAMDID   62 (279)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHcCCC
Confidence            99888765

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*

Probab=94.48  E-value=0.047  Score=47.81  Aligned_cols=32  Identities=9%  Similarity=0.078  Sum_probs=28.5

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      ..|...|++||+|+||.+|...=+..||+.|.
T Consensus        62 l~ai~~g~~Iv~~~Wv~~~~~~g~~l~e~~y~   93 (199)
T 3u3z_A           62 LLGIARGCWVLSYDWVLWSLELGHWISEEPFE   93 (199)
T ss_dssp             HHHHHTTCEEEETHHHHHHHHHTSCCCSGGGB
T ss_pred             HHHHHCCCcEEeHHHHHHHhhCCCCCChhhcc
Confidence            35667899999999999999999999999984

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=94.45  E-value=0.036  Score=46.62  Aligned_cols=81  Identities=16%  Similarity=0.101  Sum_probs=61.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      +...|++.++|+.+.+. +.+.|.|++.+.++..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        88 ~~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~  165 (225)
T 3d6j_A           88 TILFPDTLPTLTHLKKQGIRIGIISTKYRFRILSFLRNHMPD-DWFD-IIIGGEDVTHHKPDPEGLLLAIDRLKACPEEV  165 (225)
T ss_dssp             CEECTTHHHHHHHHHHHTCEEEEECSSCHHHHHHHHHTSSCT-TCCS-EEECGGGCSSCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             CccCcCHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHcCch-hhee-eeeehhhcCCCCCChHHHHHHHHHhCCChHHe
Confidence            46789999999999765 999999999999999999988765 4575 46655554321      222344567888999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|+..-.
T Consensus       166 i~iGD~~nDi  175 (225)
T 3d6j_A          166 LYIGDSTVDA  175 (225)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEcCCHHHH
Confidence            9999998533

>2jw5_A DNA polymerase lambda; BRCT domain, family X polymerase, nonhomologous END joining (NHEJ), DNA damage, DNA repair, DNA replication, DNA synthesis; HET: DNA; NMR {Homo sapiens}

Probab=94.36  E-value=0.016  Score=45.95  Aligned_cols=27  Identities=15%  Similarity=0.159  Sum_probs=24.9

Q ss_pred             CCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          299 EKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       299 ~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      .+++||++.|+.+|+..|+..||+.|.
T Consensus        76 ~~~~iV~~~Wv~dci~~~~llde~~y~  102 (106)
T 2jw5_A           76 PGAQLVKSAWLSLCLQERRLVDVAGFS  102 (106)
T ss_dssp             SSCEEEEHHHHHHHHHTCSCCCGGGTB
T ss_pred             CCcEEecCchHHHHHhcCcccCccccc
Confidence            467999999999999999999999884

>3dnp_A Stress response protein YHAX; structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG, unknown function; HET: MSE; 1.85A {Bacillus subtilis} SCOP: c.108.1.0

Probab=94.27  E-value=0.064  Score=48.14  Aligned_cols=57  Identities=26%  Similarity=0.267  Sum_probs=41.1

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++...                               +-|...+-|+++.+. ..+++.|.-...-+.
T Consensus         6 ~kli~fDlDGTLl~~~~~-------------------------------i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~   54 (290)
T 3dnp_A            6 KQLLALNIDGALLRSNGK-------------------------------IHQATKDAIEYVKKKGIYVTLVTNRHFRSAQ   54 (290)
T ss_dssp             CCEEEECCCCCCSCTTSC-------------------------------CCHHHHHHHHHHHHTTCEEEEBCSSCHHHHH
T ss_pred             ceEEEEcCCCCCCCCCCc-------------------------------cCHHHHHHHHHHHHCCCEEEEECCCChHHHH
Confidence            357899999999987521                               334556667766544 778888877777777


Q ss_pred             HHHHHhCCC
Q 040058          147 AAVKLLDLD  155 (326)
Q Consensus       147 ~v~~~LDP~  155 (326)
                      .+++.+++.
T Consensus        55 ~~~~~~~~~   63 (290)
T 3dnp_A           55 KIAKSLKLD   63 (290)
T ss_dssp             HHHHHTTCC
T ss_pred             HHHHHcCCC
Confidence            888877765

>1xvi_A MPGP, YEDP, putative mannosyl-3-phosphoglycerate phosphatase; hypothetical protein, conserved protein, phophatase-like domain; HET: 1PE PG4 PGE; 2.26A {Escherichia coli K12} SCOP: c.108.1.10

Probab=94.21  E-value=0.075  Score=48.02  Aligned_cols=58  Identities=24%  Similarity=0.251  Sum_probs=44.3

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++...                               .-|...+.|+++.+. ..++|.|.-+...+.
T Consensus         9 ~~li~~DlDGTLl~~~~~-------------------------------~~~~~~~~l~~l~~~G~~~~iaTGR~~~~~~   57 (275)
T 1xvi_A            9 PLLVFSDLDGTLLDSHSY-------------------------------DWQPAAPWLTRLREANVPVILCSSKTSAEML   57 (275)
T ss_dssp             CEEEEEECTTTTSCSSCC-------------------------------SCCTTHHHHHHHHHTTCCEEEECSSCHHHHH
T ss_pred             ceEEEEeCCCCCCCCCCc-------------------------------CCHHHHHHHHHHHHCCCeEEEEcCCCHHHHH
Confidence            467899999999976311                               224457788888655 899999998888888


Q ss_pred             HHHHHhCCCC
Q 040058          147 AAVKLLDLDS  156 (326)
Q Consensus       147 ~v~~~LDP~~  156 (326)
                      .+++.++.++
T Consensus        58 ~~~~~l~~~~   67 (275)
T 1xvi_A           58 YLQKTLGLQG   67 (275)
T ss_dssp             HHHHHTTCTT
T ss_pred             HHHHHcCCCC
Confidence            9998887654

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=94.20  E-value=0.019  Score=52.05  Aligned_cols=26  Identities=27%  Similarity=0.447  Sum_probs=23.3

Q ss_pred             ceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          301 KFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       301 ~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      .++|+|.||++|+..+++.||+.|.|
T Consensus       236 ~~iV~~~Wv~dci~~~~ll~e~~Y~~  261 (264)
T 1z56_C          236 ARVVAPEWVDHSINENCQVPEEDFPV  261 (264)
T ss_dssp             CEEECTHHHHHHHTTSCCCSSCCC--
T ss_pred             CEEecHHHHHHHHHcCCcCCHHHcCC
Confidence            49999999999999999999999986

>4dw8_A Haloacid dehalogenase-like hydrolase; HAD, putative phosphatase, enzyme function initiative, EFI, structural genomics; 1.50A {Bacteroides thetaiotaomicron} PDB: 3niw_A 4dwo_A

Probab=94.17  E-value=0.073  Score=47.46  Aligned_cols=56  Identities=18%  Similarity=0.175  Sum_probs=43.0

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++..                               .+-|...+.|+++.+. ..+++.|.-...-+.
T Consensus         5 ~kli~fDlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~   53 (279)
T 4dw8_A            5 YKLIVLDLDGTLTNSKK-------------------------------EISSRNRETLIRIQEQGIRLVLASGRPTYGIV   53 (279)
T ss_dssp             CCEEEECCCCCCSCTTS-------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHH
T ss_pred             ceEEEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCChHHHH
Confidence            35789999999998752                               1345667778887655 889999988888888


Q ss_pred             HHHHHhCC
Q 040058          147 AAVKLLDL  154 (326)
Q Consensus       147 ~v~~~LDP  154 (326)
                      .+++.++.
T Consensus        54 ~~~~~l~~   61 (279)
T 4dw8_A           54 PLANELRM   61 (279)
T ss_dssp             HHHHHTTG
T ss_pred             HHHHHhCC
Confidence            88887764

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=94.16  E-value=0.016  Score=50.44  Aligned_cols=78  Identities=10%  Similarity=-0.013  Sum_probs=56.0

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCc
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~  194 (326)
                      +.+.||+.++|+.+.+...+.|.|++.+.++..+++.++.. .+|...+... .....+.+.+.. +.+++.+++|+|++
T Consensus        95 ~~~~~g~~~~l~~l~~~g~~~i~Tn~~~~~~~~~l~~~gl~-~~f~~~~~~~-~~K~~~~~~~~~-~~~~~~~~~vgDs~  171 (231)
T 2p11_A           95 SRVYPGALNALRHLGARGPTVILSDGDVVFQPRKIARSGLW-DEVEGRVLIY-IHKELMLDQVME-CYPARHYVMVDDKL  171 (231)
T ss_dssp             GGBCTTHHHHHHHHHTTSCEEEEEECCSSHHHHHHHHTTHH-HHTTTCEEEE-SSGGGCHHHHHH-HSCCSEEEEECSCH
T ss_pred             CCcCccHHHHHHHHHhCCCEEEEeCCCHHHHHHHHHHcCcH-HhcCeeEEec-CChHHHHHHHHh-cCCCceEEEEcCcc
Confidence            46889999999999877689999999999999999988765 4676533211 111111222222 45778999999998


Q ss_pred             h
Q 040058          195 S  195 (326)
Q Consensus       195 ~  195 (326)
                      .
T Consensus       172 ~  172 (231)
T 2p11_A          172 R  172 (231)
T ss_dssp             H
T ss_pred             c
Confidence            5

>2qlt_A (DL)-glycerol-3-phosphatase 1; APC7326, RHR2P, saccharom cerevisiae, structural genomics, PSI-2, protein structure initiative; 1.60A {Saccharomyces cerevisiae}

Probab=94.14  E-value=0.056  Score=48.39  Aligned_cols=80  Identities=15%  Similarity=0.086  Sum_probs=61.5

Q ss_pred             EEeCccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCC----
Q 040058          115 VKLRPFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRG----  182 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~----  182 (326)
                      ....||+.++|+.+.+.  +.+.|.|++.+.++..+++.++..  .|. .+++.++....      +.+-++.++.    
T Consensus       113 ~~~~~g~~~~L~~l~~~~g~~l~i~T~~~~~~~~~~l~~~~l~--~f~-~i~~~~~~~~~kp~~~~~~~~~~~lgi~~~~  189 (275)
T 2qlt_A          113 SIEVPGAVKLCNALNALPKEKWAVATSGTRDMAKKWFDILKIK--RPE-YFITANDVKQGKPHPEPYLKGRNGLGFPINE  189 (275)
T ss_dssp             CEECTTHHHHHHHHHTSCGGGEEEECSSCHHHHHHHHHHHTCC--CCS-SEECGGGCSSCTTSSHHHHHHHHHTTCCCCS
T ss_pred             CCcCcCHHHHHHHHHhccCCeEEEEeCCCHHHHHHHHHHcCCC--ccC-EEEEcccCCCCCCChHHHHHHHHHcCCCccc
Confidence            56789999999999875  899999999999999999988765  365 46766654321      2233455677    


Q ss_pred             ---CCCcEEEEeCCchhh
Q 040058          183 ---QERGIVILDDTESVW  197 (326)
Q Consensus       183 ---~~~~vvIvDD~~~vw  197 (326)
                         +++.++.|+|++.-.
T Consensus       190 ~~~~~~~~i~~GDs~nDi  207 (275)
T 2qlt_A          190 QDPSKSKVVVFEDAPAGI  207 (275)
T ss_dssp             SCGGGSCEEEEESSHHHH
T ss_pred             cCCCcceEEEEeCCHHHH
Confidence               889999999998533

>3ewi_A N-acylneuraminate cytidylyltransferase; beta barrel, HAD-like, rossmannoid fold, nucleotidyltransferase, nucleus; 1.90A {Mus musculus}

Probab=94.12  E-value=0.018  Score=49.03  Aligned_cols=115  Identities=11%  Similarity=-0.046  Sum_probs=67.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      ++-..||+|+||||+.....-  ++..           ..      .-.+.+|.+.  .|+.+.+. +.+.|-|+.  ..
T Consensus         7 ~~ikliv~D~DGtL~d~~~~~--~~~g-----------~~------~~~f~~~D~~--~L~~Lk~~Gi~~~I~Tg~--~~   63 (168)
T 3ewi_A            7 KEIKLLVCNIDGCLTNGHIYV--SGDQ-----------KE------IISYDVKDAI--GISLLKKSGIEVRLISER--AC   63 (168)
T ss_dssp             CCCCEEEEECCCCCSCSCCBC--CSSC-----------CC------EEEEEHHHHH--HHHHHHHTTCEEEEECSS--CC
T ss_pred             hcCcEEEEeCccceECCcEEE--cCCC-----------CE------EEEEecCcHH--HHHHHHHCCCEEEEEeCc--HH
Confidence            344689999999999875321  1100           00      1122455553  68888765 999999988  78


Q ss_pred             HHHHHH--HhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCc
Q 040058          145 AEAAVK--LLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGK  209 (326)
Q Consensus       145 A~~v~~--~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~  209 (326)
                      +..+++  .++..  +|.+    ..+-.....+-++.++.+++.++.|-|+..=.+.-...++.+.+
T Consensus        64 ~~~~l~~l~lgi~--~~~g----~~~K~~~l~~~~~~~gi~~~~~~~vGD~~nDi~~~~~ag~~~a~  124 (168)
T 3ewi_A           64 SKQTLSALKLDCK--TEVS----VSDKLATVDEWRKEMGLCWKEVAYLGNEVSDEECLKRVGLSAVP  124 (168)
T ss_dssp             CHHHHHTTCCCCC--EECS----CSCHHHHHHHHHHHTTCCGGGEEEECCSGGGHHHHHHSSEEEEC
T ss_pred             HHHHHHHhCCCcE--EEEC----CCChHHHHHHHHHHcCcChHHEEEEeCCHhHHHHHHHCCCEEEe
Confidence            889998  55543  3321    11000011222334677888999999997544322334455544

>3pgv_A Haloacid dehalogenase-like hydrolase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: EPE; 2.39A {Klebsiella pneumoniae subsp}

Probab=94.09  E-value=0.058  Score=48.67  Aligned_cols=60  Identities=18%  Similarity=0.165  Sum_probs=43.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+...+++||||||+++..                               .+-|...+-|+++.+. ..++|.|.-...-
T Consensus        19 ~~~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~v~iaTGR~~~~   67 (285)
T 3pgv_A           19 GMYQVVASDLDGTLLSPDH-------------------------------FLTPYAKETLKLLTARGINFVFATGRHYID   67 (285)
T ss_dssp             --CCEEEEECCCCCSCTTS-------------------------------CCCHHHHHHHHHHHTTTCEEEEECSSCGGG
T ss_pred             CcceEEEEeCcCCCCCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence            5567899999999998642                               1345566777777554 7888888777777


Q ss_pred             HHHHHHHhCCCC
Q 040058          145 AEAAVKLLDLDS  156 (326)
Q Consensus       145 A~~v~~~LDP~~  156 (326)
                      +..+++.++..+
T Consensus        68 ~~~~~~~l~~~~   79 (285)
T 3pgv_A           68 VGQIRDNLGIRS   79 (285)
T ss_dssp             GHHHHHHHCSCC
T ss_pred             HHHHHHhcCCCc
Confidence            778888777663

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=94.02  E-value=0.029  Score=49.66  Aligned_cols=86  Identities=13%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      .+.||+.++|+.+.+. +.+.+-|++  ..+..+++.++.. .+|. .+++.++...      .+.+-+++++.+++.+|
T Consensus       116 ~~~p~~~~ll~~Lk~~g~~i~i~~~~--~~~~~~L~~~gl~-~~Fd-~i~~~~~~~~~KP~p~~~~~a~~~lg~~p~e~l  191 (250)
T 4gib_A          116 DILPGIESLLIDVKSNNIKIGLSSAS--KNAINVLNHLGIS-DKFD-FIADAGKCKNNKPHPEIFLMSAKGLNVNPQNCI  191 (250)
T ss_dssp             GSCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHHTCG-GGCS-EECCGGGCCSCTTSSHHHHHHHHHHTCCGGGEE
T ss_pred             ccchhHHHHHHHHHhccccccccccc--chhhhHhhhcccc-cccc-eeecccccCCCCCcHHHHHHHHHHhCCChHHeE
Confidence            4789999999999866 666665544  5678889998887 6887 4777777653      24556777888999999


Q ss_pred             EEeCCchhhccCCCCeE
Q 040058          189 ILDDTESVWSDHTENLI  205 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I  205 (326)
                      +|+|++.-.......++
T Consensus       192 ~VGDs~~Di~aA~~aG~  208 (250)
T 4gib_A          192 GIEDASAGIDAINSANM  208 (250)
T ss_dssp             EEESSHHHHHHHHHTTC
T ss_pred             EECCCHHHHHHHHHcCC
Confidence            99999854433333444

>1nrw_A Hypothetical protein, haloacid dehalogenase-like hydrolase; structural genomics, PSI, protein structure initiative; 1.70A {Bacillus subtilis} SCOP: c.108.1.10

Probab=93.87  E-value=0.079  Score=47.94  Aligned_cols=56  Identities=18%  Similarity=0.221  Sum_probs=41.6

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+.|...+.|+++.+. ..+++.|.-+...+..
T Consensus         5 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~~~~~~~   53 (288)
T 1nrw_A            5 KLIAIDLDGTLLNSKH-------------------------------QVSLENENALRQAQRDGIEVVVSTGRAHFDVMS   53 (288)
T ss_dssp             CEEEEECCCCCSCTTS-------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred             EEEEEeCCCCCCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            4689999999998752                               1345566777777654 7888888888888888


Q ss_pred             HHHHhCCC
Q 040058          148 AVKLLDLD  155 (326)
Q Consensus       148 v~~~LDP~  155 (326)
                      +++.++.+
T Consensus        54 ~~~~l~~~   61 (288)
T 1nrw_A           54 IFEPLGIK   61 (288)
T ss_dssp             HHGGGTCC
T ss_pred             HHHHcCCC
Confidence            88777654

>3epr_A Hydrolase, haloacid dehalogenase-like family; structural genomics, unknown function, HAD superfamily hydro PSI-2; 1.55A {Streptococcus agalactiae serogroup V} SCOP: c.108.1.14 PDB: 1ys9_A 1wvi_A 1ydf_A

Probab=93.82  E-value=0.034  Score=49.55  Aligned_cols=40  Identities=20%  Similarity=0.350  Sum_probs=31.5

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcC
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTM  139 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~  139 (326)
                      ...+++||||||+++..                               .+ |+..++|+++.+. ..+++.|+
T Consensus         5 ~kli~~DlDGTLl~~~~-------------------------------~i-~~~~eal~~l~~~G~~vvl~Tn   45 (264)
T 3epr_A            5 YKGYLIDLDGTIYKGKS-------------------------------RI-PAGERFIERLQEKGIPYMLVTN   45 (264)
T ss_dssp             CCEEEECCBTTTEETTE-------------------------------EC-HHHHHHHHHHHHHTCCEEEEEC
T ss_pred             CCEEEEeCCCceEeCCE-------------------------------EC-cCHHHHHHHHHHCCCeEEEEeC
Confidence            35789999999999741                               25 7888888888655 88888885

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=93.80  E-value=0.026  Score=48.00  Aligned_cols=80  Identities=16%  Similarity=0.236  Sum_probs=60.4

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC--------ccccCCCCCCCCCc
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK--------DRKNPDLVRGQERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~--------~~KdL~~l~~~~~~  186 (326)
                      +...|++.++|+.+..  .+.|.|++.+.++..+++.++.. .+|.+.+++.++....        +.+-++.++.+++.
T Consensus        86 ~~~~~~~~~~l~~l~~--~~~i~s~~~~~~~~~~l~~~~l~-~~~~~~~~~~~~~~~~~~kpk~~~~~~~~~~l~~~~~~  162 (229)
T 2fdr_A           86 VKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPDR  162 (229)
T ss_dssp             CCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             CccCcCHHHHHHHhCC--CEEEEECCChhHHHHHHHhCChH-HhccceEEeccccccCCCCcCHHHHHHHHHHcCCChhH
Confidence            4678999999999876  99999999999999999998765 5773357766553221        22234456778899


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|+|+..-.
T Consensus       163 ~i~iGD~~~Di  173 (229)
T 2fdr_A          163 VVVVEDSVHGI  173 (229)
T ss_dssp             EEEEESSHHHH
T ss_pred             eEEEcCCHHHH
Confidence            99999998544

>1vjr_A 4-nitrophenylphosphatase; TM1742, structural genomics, JCSG, protein structure initiative, joint center for structural G hydrolase; 2.40A {Thermotoga maritima} SCOP: c.108.1.14 PDB: 1pw5_A*

Probab=93.71  E-value=0.12  Score=45.64  Aligned_cols=42  Identities=21%  Similarity=0.219  Sum_probs=29.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcC
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTM  139 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~  139 (326)
                      .+...+++||||||+++.                                ..-|+..++|+.+.+. ..+++.|+
T Consensus        15 ~~~~~v~~DlDGTLl~~~--------------------------------~~~~~~~~~l~~l~~~G~~~~~aTn   57 (271)
T 1vjr_A           15 DKIELFILDMDGTFYLDD--------------------------------SLLPGSLEFLETLKEKNKRFVFFTN   57 (271)
T ss_dssp             GGCCEEEECCBTTTEETT--------------------------------EECTTHHHHHHHHHHTTCEEEEEES
T ss_pred             cCCCEEEEcCcCcEEeCC--------------------------------EECcCHHHHHHHHHHcCCeEEEEEC
Confidence            455679999999999873                                1336666777766654 66677774

>2pq0_A Hypothetical conserved protein GK1056; hyopthetical protein, structural genomics, unknown function; 2.60A {Geobacillus kaustophilus} PDB: 2qyh_A

Probab=93.66  E-value=0.061  Score=47.58  Aligned_cols=15  Identities=27%  Similarity=0.392  Sum_probs=13.2

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         4 kli~~DlDGTLl~~~   18 (258)
T 2pq0_A            4 KIVFFDIDGTLLDEQ   18 (258)
T ss_dssp             CEEEECTBTTTBCTT
T ss_pred             eEEEEeCCCCCcCCC
Confidence            468999999999985

>3l5k_A Protein GS1, haloacid dehalogenase-like hydrolase domain- containing protein 1A; HDHD1A, haloacid dehalogenase-like hydrolase domain containing 1A; 2.00A {Homo sapiens}

Probab=93.61  E-value=0.023  Score=49.50  Aligned_cols=81  Identities=11%  Similarity=0.085  Sum_probs=57.9

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHH-hCCCCccccceEEeec--CCCC------CccccCCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKL-LDLDSKYFSSRIIARE--DFNG------KDRKNPDLVRGQE  184 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~-LDP~~~~F~~Ri~sRd--~~~~------~~~KdL~~l~~~~  184 (326)
                      +...||+.++|+.+.+. +.+.|.|++.+.++...+.. ++.. .+|. .+++.+  +...      .+.+-++.++.++
T Consensus       111 ~~~~~~~~~~l~~l~~~g~~~~i~sn~~~~~~~~~l~~~~~l~-~~f~-~~~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~  188 (250)
T 3l5k_A          111 AALMPGAEKLIIHLRKHGIPFALATSSRSASFDMKTSRHKEFF-SLFS-HIVLGDDPEVQHGKPDPDIFLACAKRFSPPP  188 (250)
T ss_dssp             CCBCTTHHHHHHHHHHTTCCEEEECSCCHHHHHHHTTTCHHHH-TTSS-CEECTTCTTCCSCTTSTHHHHHHHHTSSSCC
T ss_pred             CCCCCCHHHHHHHHHhCCCcEEEEeCCCHHHHHHHHHhccCHH-hhee-eEEecchhhccCCCCChHHHHHHHHHcCCCC
Confidence            56899999999999877 99999999998887765532 2222 3576 466555  4332      1334456677776


Q ss_pred             --CcEEEEeCCchhh
Q 040058          185 --RGIVILDDTESVW  197 (326)
Q Consensus       185 --~~vvIvDD~~~vw  197 (326)
                        +.++.|+|+..-.
T Consensus       189 ~~~~~i~iGD~~~Di  203 (250)
T 3l5k_A          189 AMEKCLVFEDAPNGV  203 (250)
T ss_dssp             CGGGEEEEESSHHHH
T ss_pred             CcceEEEEeCCHHHH
Confidence              9999999998544

>1l0b_A BRCA1; TANDEM-BRCT, three-helix bundle, unknown function; 2.30A {Rattus norvegicus} SCOP: c.15.1.3 c.15.1.3

Probab=93.58  E-value=0.063  Score=47.30  Aligned_cols=30  Identities=30%  Similarity=0.253  Sum_probs=23.0

Q ss_pred             hhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          296 LVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       296 a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      |.+.|++||+|.||.+|+...+..+++.|.
T Consensus       182 ~~~~~i~iVs~~WlldsI~~~~~~~~~~Y~  211 (229)
T 1l0b_A          182 GQLCKGRLVMWDWVLDSISVYRCRDLDAYL  211 (229)
T ss_dssp             ------CEEETHHHHHHHHTTSCCCGGGGB
T ss_pred             HHHcCCeEeehhHHHHHHhcCCcCCccceE
Confidence            345789999999999999999999999985

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=93.53  E-value=0.092  Score=43.29  Aligned_cols=76  Identities=12%  Similarity=0.051  Sum_probs=55.5

Q ss_pred             eCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEEE
Q 040058          117 LRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIVI  189 (326)
Q Consensus       117 lRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vvI  189 (326)
                      ..|++.++|+.+.+. +.++|.|++. .++..+++.++.. .+|. .+++.++....      +.+-++.++.+  .++.
T Consensus        83 ~~~~~~~~l~~l~~~g~~~~i~t~~~-~~~~~~l~~~~~~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~--~~~~  157 (190)
T 2fi1_A           83 LFEGVSDLLEDISNQGGRHFLVSHRN-DQVLEILEKTSIA-AYFT-EVVTSSSGFKRKPNPESMLYLREKYQIS--SGLV  157 (190)
T ss_dssp             BCTTHHHHHHHHHHTTCEEEEECSSC-THHHHHHHHTTCG-GGEE-EEECGGGCCCCTTSCHHHHHHHHHTTCS--SEEE
T ss_pred             cCcCHHHHHHHHHHCCCcEEEEECCc-HHHHHHHHHcCCH-hhee-eeeeccccCCCCCCHHHHHHHHHHcCCC--eEEE
Confidence            889999999999876 9999999886 4788888888765 5676 46665554321      12223345555  8999


Q ss_pred             EeCCchhh
Q 040058          190 LDDTESVW  197 (326)
Q Consensus       190 vDD~~~vw  197 (326)
                      |+|++.-.
T Consensus       158 iGD~~~Di  165 (190)
T 2fi1_A          158 IGDRPIDI  165 (190)
T ss_dssp             EESSHHHH
T ss_pred             EcCCHHHH
Confidence            99998544

>3u3z_A Microcephalin; DNA repair, cell cycle regulation, cell cycle; HET: SEP PTR; 1.50A {Homo sapiens} PDB: 3szm_A* 3t1n_A* 3sht_A 3shv_A*

Probab=93.53  E-value=0.033  Score=48.81  Aligned_cols=58  Identities=12%  Similarity=0.083  Sum_probs=42.5

Q ss_pred             hccC-CCcEEEE-cCcc-c-h-HHHHHHHH-------------------HHhhhCCceEEchHHHHHHHHHhcCCCCCCC
Q 040058          269 RSEF-SRDVLYF-SAIF-R-D-CLWAEQEE-------------------KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDY  324 (326)
Q Consensus       269 r~~v-~g~~ivf-s~~~-p-~-~~~~~aea-------------------~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f  324 (326)
                      +..+ +|+.++| ++.. | . .|..+.++                   +.++..++.+|+|.||.+|+..-+..|.++|
T Consensus       116 ~~~LF~g~~~~~v~~~~~~~~~~L~~lI~~~GG~v~~~~~~~~iiI~~~~~~~~~~~~~V~p~Wi~DsI~~~~llp~~~Y  195 (199)
T 3u3z_A          116 RGTLFADQPVMFVSPASSPPVAKLCELVHLCGGRVSQVPRQASIVIGPYSGKKKATVKYLSEKWVLDSITQHKVCAPENY  195 (199)
T ss_dssp             CCCTTTTSCCEEECTTCSSCHHHHHHHHHHTTCCBCSSGGGCSEEESCCCSCCCTTCEEECHHHHHHHHHHTSCCCGGGG
T ss_pred             cchhhCCCeEEEECCCCCCCHHHHHHHHHHcCCEEeccCCCCEEEEeCCchhccCCCcEEChhHHHHHHHcCCcCChHhc
Confidence            5678 9997555 4432 2 2 66666661                   1244567899999999999999999999999


Q ss_pred             CC
Q 040058          325 LP  326 (326)
Q Consensus       325 ~~  326 (326)
                      .+
T Consensus       196 ~~  197 (199)
T 3u3z_A          196 LL  197 (199)
T ss_dssp             BC
T ss_pred             cC
Confidence            75

>1nf2_A Phosphatase; structural proteomics, HAD NEW fold, structural genomics, BSGC structure funded by NIH structure initiative, PSI; 2.20A {Thermotoga maritima} SCOP: c.108.1.10

Probab=93.49  E-value=0.13  Score=46.02  Aligned_cols=56  Identities=18%  Similarity=0.059  Sum_probs=42.6

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|...+.|++ .+ -..++|.|.-+..-+..
T Consensus         3 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~-~~~Gi~v~iaTGR~~~~~~~   50 (268)
T 1nf2_A            3 RVFVFDLDGTLLNDNL-------------------------------EISEKDRRNIEK-LSRKCYVVFASGRMLVSTLN   50 (268)
T ss_dssp             CEEEEECCCCCSCTTS-------------------------------CCCHHHHHHHHH-HTTTSEEEEECSSCHHHHHH
T ss_pred             cEEEEeCCCcCCCCCC-------------------------------ccCHHHHHHHHH-HhCCCEEEEECCCChHHHHH
Confidence            4689999999998642                               133456677777 54 48899999888888889


Q ss_pred             HHHHhCCCC
Q 040058          148 AVKLLDLDS  156 (326)
Q Consensus       148 v~~~LDP~~  156 (326)
                      +++.+++++
T Consensus        51 ~~~~l~~~~   59 (268)
T 1nf2_A           51 VEKKYFKRT   59 (268)
T ss_dssp             HHHHHSSSC
T ss_pred             HHHHhCCCC
Confidence            998887764

>3dao_A Putative phosphatse; structural genomics, joint center for S genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE 1PE CIT; 1.80A {Eubacterium rectale}

Probab=93.18  E-value=0.079  Score=47.81  Aligned_cols=59  Identities=8%  Similarity=0.081  Sum_probs=38.3

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+...+++||||||+++...                              .+-|...+-|+++.+. ..++|.|.-...-
T Consensus        19 ~~~kli~~DlDGTLl~~~~~------------------------------~i~~~~~~al~~l~~~G~~v~iaTGR~~~~   68 (283)
T 3dao_A           19 GMIKLIATDIDGTLVKDGSL------------------------------LIDPEYMSVIDRLIDKGIIFVVCSGRQFSS   68 (283)
T ss_dssp             CCCCEEEECCBTTTBSTTCS------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCHHH
T ss_pred             cCceEEEEeCcCCCCCCCCC------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHH
Confidence            45567999999999987531                              1334455566666443 6677777666666


Q ss_pred             HHHHHHHhCC
Q 040058          145 AEAAVKLLDL  154 (326)
Q Consensus       145 A~~v~~~LDP  154 (326)
                      +..+++.+.+
T Consensus        69 ~~~~~~~l~~   78 (283)
T 3dao_A           69 EFKLFAPIKH   78 (283)
T ss_dssp             HHHHTGGGGG
T ss_pred             HHHHHHHcCC
Confidence            6666665554

>3i28_A Epoxide hydrolase 2; aromatic hydrocarbons catabolism, detoxification, magnesium, metal-binding, peroxisome; HET: 34N; 1.95A {Homo sapiens} PDB: 1s8o_A* 1zd2_P* 1vj5_A* 1zd4_A* 1zd5_A* 3i1y_A* 1zd3_A* 3koo_A* 3otq_A* 4hai_A* 1cqz_A 1cr6_A* 1ek1_A* 1ek2_A* 3ans_A* 3ant_A* 3pdc_A*

Probab=93.12  E-value=0.041  Score=52.73  Aligned_cols=77  Identities=14%  Similarity=0.018  Sum_probs=58.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCC------cHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMS------TRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVR  181 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g------~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~  181 (326)
                      +.+.||+.++|+.+.+. |.+.|.|++      .+......+.-|+   .+|.. +++.++...      .+.+-+++++
T Consensus        99 ~~~~~~~~~~L~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~l~---~~fd~-i~~~~~~~~~KP~p~~~~~~~~~lg  174 (555)
T 3i28_A           99 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK---MHFDF-LIESCQVGMVKPEPQIYKFLLDTLK  174 (555)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH---TTSSE-EEEHHHHTCCTTCHHHHHHHHHHHT
T ss_pred             cCcChhHHHHHHHHHHCCCEEEEEeCCCccccchhhHHHHHhhhhh---hheeE-EEeccccCCCCCCHHHHHHHHHHcC
Confidence            57899999999999887 999999999      6666655554454   36864 776666543      2555677788


Q ss_pred             CCCCcEEEEeCCch
Q 040058          182 GQERGIVILDDTES  195 (326)
Q Consensus       182 ~~~~~vvIvDD~~~  195 (326)
                      .+++.+++|||+..
T Consensus       175 ~~p~~~~~v~D~~~  188 (555)
T 3i28_A          175 ASPSEVVFLDDIGA  188 (555)
T ss_dssp             CCGGGEEEEESCHH
T ss_pred             CChhHEEEECCcHH
Confidence            89999999999974

>2g80_A Protein UTR4; YEL038W, UTR4 protein (unknown transcript 4 protein), struct genomics, PSI, protein structure initiative; 2.28A {Saccharomyces cerevisiae} SCOP: c.108.1.22

Probab=93.10  E-value=0.01  Score=53.78  Aligned_cols=87  Identities=7%  Similarity=0.053  Sum_probs=60.3

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhC-----------CCCccccceEEeecC-CCC----CccccCC
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLD-----------LDSKYFSSRIIARED-FNG----KDRKNPD  178 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LD-----------P~~~~F~~Ri~sRd~-~~~----~~~KdL~  178 (326)
                      +.+.||+.++|+.   .+.+.|.|++++..++.+++...           .. .+|. .+++..- ...    .+.+-++
T Consensus       124 ~~~~pgv~e~L~~---g~~l~i~Tn~~~~~~~~~l~~~~~g~~~~~~~l~l~-~~~~-~~f~~~~~g~KP~p~~~~~a~~  198 (253)
T 2g80_A          124 APVYADAIDFIKR---KKRVFIYSSGSVKAQKLLFGYVQDPNAPAHDSLDLN-SYID-GYFDINTSGKKTETQSYANILR  198 (253)
T ss_dssp             BCCCHHHHHHHHH---CSCEEEECSSCHHHHHHHHHSBCCTTCTTSCCBCCG-GGCC-EEECHHHHCCTTCHHHHHHHHH
T ss_pred             CCCCCCHHHHHHc---CCEEEEEeCCCHHHHHHHHHhhcccccccccccchH-hhcc-eEEeeeccCCCCCHHHHHHHHH
Confidence            5788999999999   79999999999999999998652           22 2344 2442211 111    2455567


Q ss_pred             CCCCCCCcEEEEeCCchhhccCCCCeEE
Q 040058          179 LVRGQERGIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       179 ~l~~~~~~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      +++.+++.+|+|+|++.-.......++.
T Consensus       199 ~lg~~p~~~l~vgDs~~di~aA~~aG~~  226 (253)
T 2g80_A          199 DIGAKASEVLFLSDNPLELDAAAGVGIA  226 (253)
T ss_dssp             HHTCCGGGEEEEESCHHHHHHHHTTTCE
T ss_pred             HcCCCcccEEEEcCCHHHHHHHHHcCCE
Confidence            7888899999999998544333344444

>3pdw_A Uncharacterized hydrolase YUTF; structural genomics, PSI2, NYSGXRC, protein structure initia YORK SGX research center for structural genomics; 1.60A {Bacillus subtilis} SCOP: c.108.1.0

Probab=93.10  E-value=0.081  Score=46.89  Aligned_cols=40  Identities=15%  Similarity=0.116  Sum_probs=28.4

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcC
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTM  139 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~  139 (326)
                      ...+++||||||+++..                                .-|+..++|+++.+. ..+++.|.
T Consensus         6 ~kli~~DlDGTLl~~~~--------------------------------~~~~~~~ai~~l~~~Gi~v~laTg   46 (266)
T 3pdw_A            6 YKGYLIDLDGTMYNGTE--------------------------------KIEEACEFVRTLKDRGVPYLFVTN   46 (266)
T ss_dssp             CSEEEEECSSSTTCHHH--------------------------------HHHHHHHHHHHHHHTTCCEEEEES
T ss_pred             CCEEEEeCcCceEeCCE--------------------------------eCccHHHHHHHHHHCCCeEEEEeC
Confidence            45789999999998631                                225666777777655 67777776

>2hx1_A Predicted sugar phosphatases of the HAD superfamily; ZP_00311070.1, possible sugar phosphatase, structural genomics; HET: MSE EPE; 2.10A {Cytophaga hutchinsonii}

Probab=93.00  E-value=0.2  Score=44.91  Aligned_cols=58  Identities=14%  Similarity=0.077  Sum_probs=39.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcC---Cc
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTM---ST  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~---g~  141 (326)
                      .+...+++||||||++..                                ..-|+..++|+.+.+. ..+++.|+   -+
T Consensus        12 ~~~k~i~~D~DGtL~~~~--------------------------------~~~~~~~~~l~~l~~~g~~~~~~Tn~~~r~   59 (284)
T 2hx1_A           12 PKYKCIFFDAFGVLKTYN--------------------------------GLLPGIENTFDYLKAQGQDYYIVTNDASRS   59 (284)
T ss_dssp             GGCSEEEECSBTTTEETT--------------------------------EECTTHHHHHHHHHHTTCEEEEEECCCSSC
T ss_pred             hcCCEEEEcCcCCcCcCC--------------------------------eeChhHHHHHHHHHHCCCEEEEEeCCCCcC
Confidence            445689999999999853                                1237888888888654 88899996   23


Q ss_pred             HHHHHHHHHHhCCC
Q 040058          142 RCYAEAAVKLLDLD  155 (326)
Q Consensus       142 ~~YA~~v~~~LDP~  155 (326)
                      .......++.+.-.
T Consensus        60 ~~~~~~~l~~lg~~   73 (284)
T 2hx1_A           60 PEQLADSYHKLGLF   73 (284)
T ss_dssp             HHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHCCcC
Confidence            34444455555443

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=92.88  E-value=0.087  Score=44.02  Aligned_cols=80  Identities=10%  Similarity=0.124  Sum_probs=57.0

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCC-CccccceEEeecC-C------CC----CccccCCC-CC
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLD-SKYFSSRIIARED-F------NG----KDRKNPDL-VR  181 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~-~~~F~~Ri~sRd~-~------~~----~~~KdL~~-l~  181 (326)
                      .++||+.++|+.+.+. +.++|.|++.+.+++.+++.++-. ..+|...+....+ .      ..    ...+-|.. ++
T Consensus        82 ~~~~~~~~~l~~l~~~g~~~~i~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  161 (219)
T 3kd3_A           82 LLTDGIKELVQDLKNKGFEIWIFSGGLSESIQPFADYLNIPRENIFAVETIWNSDGSFKELDNSNGACDSKLSAFDKAKG  161 (219)
T ss_dssp             TBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCCGGGEEEEEEEECTTSBEEEEECTTSTTTCHHHHHHHHGG
T ss_pred             cCChhHHHHHHHHHHCCCeEEEEcCCcHHHHHHHHHHcCCCcccEEEeeeeecCCCceeccCCCCCCcccHHHHHHHHhC
Confidence            4889999999999876 999999999999999999998764 2456543432221 1      10    12222322 36


Q ss_pred             CCCCcEEEEeCCch
Q 040058          182 GQERGIVILDDTES  195 (326)
Q Consensus       182 ~~~~~vvIvDD~~~  195 (326)
                      .+++.++.|.|+..
T Consensus       162 ~~~~~~~~vGD~~~  175 (219)
T 3kd3_A          162 LIDGEVIAIGDGYT  175 (219)
T ss_dssp             GCCSEEEEEESSHH
T ss_pred             CCCCCEEEEECCHh
Confidence            67889999999975

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=92.84  E-value=0.0054  Score=51.71  Aligned_cols=93  Identities=13%  Similarity=0.030  Sum_probs=63.1

Q ss_pred             EEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHH-hCCCCccccceEEeecCCCC------CccccCCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKL-LDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQER  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~-LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~  185 (326)
                      .+.+.||+.++|+.+.+ .+.++|.|++.+.+++.+++. ++.. .+|. .+++.++...      .+.+-++.++.+++
T Consensus        89 ~~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~~~~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~~~~~~~  166 (206)
T 2b0c_A           89 FVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAAD-HIYLSQDLGMRKPEARIYQHVLQAEGFSPS  166 (206)
T ss_dssp             EEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCS-EEEEHHHHTCCTTCHHHHHHHHHHHTCCGG
T ss_pred             hcccCccHHHHHHHHHHCCCeEEEEECCChHHHHHHHHhccChh-hhee-eEEEecccCCCCCCHHHHHHHHHHcCCCHH
Confidence            47899999999999985 499999999998887665544 3322 3565 4665554332      12333455678889


Q ss_pred             cEEEEeCCchhhccCCCCeEEeC
Q 040058          186 GIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      .+++|+|++.-.......++.+-
T Consensus       167 ~~~~vgD~~~Di~~a~~aG~~~~  189 (206)
T 2b0c_A          167 DTVFFDDNADNIEGANQLGITSI  189 (206)
T ss_dssp             GEEEEESCHHHHHHHHTTTCEEE
T ss_pred             HeEEeCCCHHHHHHHHHcCCeEE
Confidence            99999999864433334455443

>2zos_A MPGP, mannosyl-3-phosphoglycerate phosphatase; haloacid dehalogenase like hydrolase, mannosylglycerate, cytoplasm, hydrolase, magnesium; 1.70A {Pyrococcus horikoshii} PDB: 1wzc_A

Probab=92.64  E-value=0.16  Score=45.08  Aligned_cols=35  Identities=20%  Similarity=0.328  Sum_probs=28.0

Q ss_pred             HHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCC
Q 040058          121 VRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLD  155 (326)
Q Consensus       121 l~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~  155 (326)
                      ..+.|+++.+. ..++|.|.-....+..+++.++..
T Consensus        22 ~~~~l~~l~~~g~~~~i~Tgr~~~~~~~~~~~~~~~   57 (249)
T 2zos_A           22 AKPIIEELKDMGFEIIFNSSKTRAEQEYYRKELEVE   57 (249)
T ss_dssp             GHHHHHHHHHTTEEEEEBCSSCHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHHcCCC
Confidence            56778877654 889999988888888898888765

>1rkq_A Hypothetical protein YIDA; two domain structure with beta-alpha sandwich. stucture contains A magnesium ION., PSI, protein structure initiative; 1.40A {Escherichia coli} SCOP: c.108.1.10

Probab=92.63  E-value=0.11  Score=47.03  Aligned_cols=56  Identities=21%  Similarity=0.284  Sum_probs=41.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|...+.|+++.+. ..++|.|.-+..-+..
T Consensus         6 kli~~DlDGTLl~~~~-------------------------------~i~~~~~~aL~~l~~~Gi~vviaTGR~~~~~~~   54 (282)
T 1rkq_A            6 KLIAIDMDGTLLLPDH-------------------------------TISPAVKNAIAAARARGVNVVLTTGRPYAGVHN   54 (282)
T ss_dssp             CEEEECCCCCCSCTTS-------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHH
T ss_pred             eEEEEeCCCCCCCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            4789999999998642                               1345566777777655 7888888777777778


Q ss_pred             HHHHhCCC
Q 040058          148 AVKLLDLD  155 (326)
Q Consensus       148 v~~~LDP~  155 (326)
                      +++.++.+
T Consensus        55 ~~~~l~l~   62 (282)
T 1rkq_A           55 YLKELHME   62 (282)
T ss_dssp             HHHHTTCC
T ss_pred             HHHHhCCC
Confidence            88877654

>1t15_A Breast cancer type 1 susceptibility protein; protein-peptide complex, antitumor protein; HET: SEP; 1.85A {Homo sapiens} SCOP: c.15.1.3 c.15.1.3 PDB: 1jnx_X* 1t29_A* 1t2v_A* 1y98_A* 3coj_X* 3k0h_A* 3k0k_A* 3pxe_A* 3pxb_A 3pxc_X 1t2u_A 1n5o_X 3pxa_A 3k15_A* 3k16_A* 3pxd_A 2ing_X 1oqa_A

Probab=92.59  E-value=0.052  Score=47.16  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=27.8

Q ss_pred             hhhCCceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          296 LVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       296 a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      |.+.|+++|+|.||.+|+...+..|++.|.+
T Consensus       180 a~~~~~~iV~~~Wi~dsi~~~~~l~~~~Y~l  210 (214)
T 1t15_A          180 GQMCEAPVVTREWVLDSVALYQCQELDTYLI  210 (214)
T ss_dssp             TTTCSSCEEEHHHHHHHHHHTSCCCSGGGBC
T ss_pred             HHhcCCcEEeccHHHHhHhhcCcCCCcceee
Confidence            4567899999999999999999999999964

>1zjj_A Hypothetical protein PH1952; alpha/beta hydrolase fold, HAD superfamily, structural genom riken structural genomics/proteomics initiative; 1.85A {Pyrococcus horikoshii}

Probab=92.45  E-value=0.1  Score=46.47  Aligned_cols=41  Identities=17%  Similarity=0.316  Sum_probs=27.4

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCc
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMST  141 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~  141 (326)
                      ..+++||||||++...                               .. |+..++|+.+.+ ...+.+.|+.+
T Consensus         2 k~i~~D~DGtL~~~~~-------------------------------~~-~~~~~~l~~l~~~g~~~~~~T~r~   43 (263)
T 1zjj_A            2 VAIIFDMDGVLYRGNR-------------------------------AI-PGVRELIEFLKERGIPFAFLTNNS   43 (263)
T ss_dssp             EEEEEECBTTTEETTE-------------------------------EC-TTHHHHHHHHHHHTCCEEEEESCC
T ss_pred             eEEEEeCcCceEeCCE-------------------------------eC-ccHHHHHHHHHHCCCeEEEEeCCC
Confidence            3689999999997531                               12 666667766653 36666777654

>3fzq_A Putative hydrolase; YP_001086940.1, putative haloacid dehalogenase-like hydrolas structural genomics, joint center for structural genomics; HET: MSE; 2.10A {Clostridium difficile} SCOP: c.108.1.0

Probab=92.30  E-value=0.072  Score=47.10  Aligned_cols=16  Identities=31%  Similarity=0.293  Sum_probs=13.9

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         6 kli~fDlDGTLl~~~~   21 (274)
T 3fzq_A            6 KLLILDIDGTLRDEVY   21 (274)
T ss_dssp             CEEEECSBTTTBBTTT
T ss_pred             eEEEEECCCCCCCCCC
Confidence            5789999999999864

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=92.16  E-value=0.0079  Score=51.53  Aligned_cols=46  Identities=17%  Similarity=0.337  Sum_probs=37.7

Q ss_pred             EEeCccHHHHHHHhhc--CceEEEEcCCcHHHHHHHHHHhCCCCcccc
Q 040058          115 VKLRPFVRTFLEQASS--LVDIYLCTMSTRCYAEAAVKLLDLDSKYFS  160 (326)
Q Consensus       115 vklRPgl~eFL~~ls~--~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~  160 (326)
                      +.+.||+.++|+.+.+  .+.+.|.|++.+.+++.+++.++-...+|.
T Consensus        74 ~~~~~g~~e~L~~L~~~~g~~~~ivT~~~~~~~~~~l~~~~l~~~~f~  121 (197)
T 1q92_A           74 LEPLPGAVEAVKEMASLQNTDVFICTSPIKMFKYCPYEKYAWVEKYFG  121 (197)
T ss_dssp             CCBCTTHHHHHHHHHHSTTEEEEEEECCCSCCSSHHHHHHHHHHHHHC
T ss_pred             CCcCcCHHHHHHHHHhcCCCeEEEEeCCccchHHHHHHHhchHHHhch
Confidence            5688999999999987  599999999999988888877654433564

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=92.16  E-value=0.088  Score=44.25  Aligned_cols=79  Identities=16%  Similarity=0.172  Sum_probs=57.6

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~v  187 (326)
                      ....|++.++|+.+.+. +.+.|.|++  ..+..+++.++.. .+|. .+++.++....      +.+-++.++.+++.+
T Consensus        90 ~~~~~~~~~~l~~l~~~g~~~~i~t~~--~~~~~~l~~~~l~-~~f~-~~~~~~~~~~~Kp~~~~~~~~~~~lgi~~~~~  165 (221)
T 2wf7_A           90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLT-GYFD-AIADPAEVAASKPAPDIFIAAAHAVGVAPSES  165 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCCC--TTHHHHHHHTTCG-GGCS-EECCTTTSSSCTTSSHHHHHHHHHTTCCGGGE
T ss_pred             CCCCCCHHHHHHHHHHCCCeEEEEcCc--HHHHHHHHHcChH-HHcc-eEeccccCCCCCCChHHHHHHHHHcCCChhHe
Confidence            35789999999999875 999999998  5677788887765 4676 36555554321      223345577888999


Q ss_pred             EEEeCCchhh
Q 040058          188 VILDDTESVW  197 (326)
Q Consensus       188 vIvDD~~~vw  197 (326)
                      +.|+|++.-.
T Consensus       166 i~iGD~~nDi  175 (221)
T 2wf7_A          166 IGLEDSQAGI  175 (221)
T ss_dssp             EEEESSHHHH
T ss_pred             EEEeCCHHHH
Confidence            9999998533

>2yj3_A Copper-transporting ATPase; hydrolase, P-type ATPase, COPB, heavy metal translocation; 2.20A {Sulfolobus solfataricus} PDB: 2iye_A 2yj6_A* 2yj5_A* 2yj4_A*

Probab=91.35  E-value=0.027  Score=50.86  Aligned_cols=74  Identities=14%  Similarity=0.258  Sum_probs=58.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDT  193 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~  193 (326)
                      ..++||+.++|+.+.+. +.++|.|++.+..+..+++.++.. .+|.. ++     +....+-++.++...+.+++|.|+
T Consensus       135 ~~~~~g~~~~l~~L~~~g~~~~i~T~~~~~~~~~~~~~~gl~-~~f~~-~~-----p~~k~~~~~~l~~~~~~~~~VGD~  207 (263)
T 2yj3_A          135 DVPRPNLKDYLEKLKNEGLKIIILSGDKEDKVKELSKELNIQ-EYYSN-LS-----PEDKVRIIEKLKQNGNKVLMIGDG  207 (263)
Confidence            46899999999999876 999999999999999999998876 56763 44     112344456666677889999999


Q ss_pred             ch
Q 040058          194 ES  195 (326)
Q Consensus       194 ~~  195 (326)
                      ..
T Consensus       208 ~~  209 (263)
T 2yj3_A          208 VN  209 (263)
Confidence            64

>1s2o_A SPP, sucrose-phosphatase; phosphohydrolase, HAD superfamily, cyanobacteria; 1.40A {Synechocystis SP} SCOP: c.108.1.10 PDB: 1tj3_A 1tj4_A* 1tj5_A* 1u2s_A* 1u2t_A* 2b1q_A* 2b1r_A* 2d2v_A*

Probab=92.09  E-value=0.12  Score=45.82  Aligned_cols=54  Identities=20%  Similarity=0.209  Sum_probs=36.9

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v  148 (326)
                      ..+++||||||+++...                               . |...+.|+++.+...++|.|.-+...+..+
T Consensus         4 ~li~~DlDGTLl~~~~~-------------------------------~-~~~~~~l~~~~~gi~v~iaTGR~~~~~~~~   51 (244)
T 1s2o_A            4 LLLISDLDNTWVGDQQA-------------------------------L-EHLQEYLGDRRGNFYLAYATGRSYHSAREL   51 (244)
T ss_dssp             EEEEECTBTTTBSCHHH-------------------------------H-HHHHHHHHTTGGGEEEEEECSSCHHHHHHH
T ss_pred             eEEEEeCCCCCcCCHHH-------------------------------H-HHHHHHHHHhcCCCEEEEEcCCCHHHHHHH
Confidence            47899999999986410                               1 334556666655677777777777777777


Q ss_pred             HHHhCC
Q 040058          149 VKLLDL  154 (326)
Q Consensus       149 ~~~LDP  154 (326)
                      ++.++.
T Consensus        52 ~~~l~l   57 (244)
T 1s2o_A           52 QKQVGL   57 (244)
T ss_dssp             HHHHTC
T ss_pred             HHHcCC
Confidence            776543

>2fue_A PMM 1, PMMH-22, phosphomannomutase 1; enzyme-product complex, protein glycosyl carbohydrate-deficient glycoprotein syndrome; HET: MSE M1P; 1.75A {Homo sapiens} SCOP: c.108.1.10 PDB: 2fuc_A*

Probab=92.03  E-value=0.2  Score=44.79  Aligned_cols=47  Identities=30%  Similarity=0.448  Sum_probs=32.2

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRC  143 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~  143 (326)
                      .+...+++||||||+++..                               .+-|...+.|+++.+...++|.|.-+..
T Consensus        11 ~~~kli~~DlDGTLl~~~~-------------------------------~is~~~~~al~~l~~~i~v~iaTGR~~~   57 (262)
T 2fue_A           11 KERVLCLFDVDGTLTPARQ-------------------------------KIDPEVAAFLQKLRSRVQIGVVGGSDYC   57 (262)
T ss_dssp             --CEEEEEESBTTTBSTTS-------------------------------CCCHHHHHHHHHHTTTSEEEEECSSCHH
T ss_pred             cCeEEEEEeCccCCCCCCC-------------------------------cCCHHHHHHHHHHHhCCEEEEEcCCCHH
Confidence            3457899999999998641                               1446677888888766667777754433

>2ho4_A Haloacid dehalogenase-like hydrolase domain containing 2; HDHD2, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; 2.20A {Mus musculus} PDB: 3hlt_A

Probab=91.93  E-value=0.14  Score=44.59  Aligned_cols=16  Identities=19%  Similarity=0.150  Sum_probs=12.3

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      -..+++||||||+++.
T Consensus         7 ik~i~fDlDGTLld~~   22 (259)
T 2ho4_A            7 LKAVLVDLNGTLHIED   22 (259)
T ss_dssp             CCEEEEESSSSSCC--
T ss_pred             CCEEEEeCcCcEEeCC
Confidence            3578999999999865

>1swv_A Phosphonoacetaldehyde hydrolase; HAD enzyme superfamily, phosphonotase, metal binding; 2.30A {Bacillus cereus} SCOP: c.108.1.3 PDB: 1sww_A 2iof_A* 2ioh_A 1rql_A 1rqn_A 2iof_K* 1rdf_A 1fez_A

Probab=91.82  E-value=0.087  Score=46.17  Aligned_cols=82  Identities=17%  Similarity=0.069  Sum_probs=59.2

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCC-Cc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQE-RG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~-~~  186 (326)
                      ....||+.++|+.+.+. +.+.|.|++.+.++..+++.++..+ +|.+.+++.++....      +.+-++.++.++ +.
T Consensus       102 ~~~~~~~~~~l~~l~~~g~~~~i~t~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~kp~~~~~~~~~~~lgi~~~~~  180 (267)
T 1swv_A          102 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQG-YKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  180 (267)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHTT-CCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             cccCccHHHHHHHHHHcCCeEEEEcCCCHHHHHHHHHHcCCcc-cChHheecCCccCCCCCCHHHHHHHHHHhCCCCCcC
Confidence            45789999999999866 9999999999999999998876543 442345555554321      222334567777 89


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      ++.|.|+..-.
T Consensus       181 ~i~iGD~~nDi  191 (267)
T 1swv_A          181 MIKVGDTVSDM  191 (267)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEEeCCHHHH
Confidence            99999998433

>3vay_A HAD-superfamily hydrolase; rossmann fold, haloacid dehalogenase; 1.98A {Pseudomonas syringae PV}

Probab=91.63  E-value=0.035  Score=47.31  Aligned_cols=73  Identities=21%  Similarity=0.190  Sum_probs=54.2

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+.+.+.+.|.|++...     ++.+... .+|. .+++.++...      .+.+-++.++.+++.++
T Consensus       104 ~~~~~~~~~~l~~l~~~~~~~i~t~~~~~-----l~~~~l~-~~f~-~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~~  176 (230)
T 3vay_A          104 VQIFPEVQPTLEILAKTFTLGVITNGNAD-----VRRLGLA-DYFA-FALCAEDLGIGKPDPAPFLEALRRAKVDASAAV  176 (230)
T ss_dssp             CCBCTTHHHHHHHHHTTSEEEEEESSCCC-----GGGSTTG-GGCS-EEEEHHHHTCCTTSHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCcCHHHHHHHHHhCCeEEEEECCchh-----hhhcCcH-HHee-eeEEccccCCCCcCHHHHHHHHHHhCCCchheE
Confidence            46899999999999888999999999875     4444444 4676 4666655432      13344556788899999


Q ss_pred             EEeCCc
Q 040058          189 ILDDTE  194 (326)
Q Consensus       189 IvDD~~  194 (326)
                      +|+|+.
T Consensus       177 ~vGD~~  182 (230)
T 3vay_A          177 HVGDHP  182 (230)
T ss_dssp             EEESCT
T ss_pred             EEeCCh
Confidence            999996

>2oyc_A PLP phosphatase, pyridoxal phosphate phosphatase; structural genomics, NYSGXRC, NEW YORK SGX research center for structural genomics, PSI-2; 1.72A {Homo sapiens} PDB: 2p27_A 2p69_A* 2cft_A* 2cfs_A 2cfr_A*

Probab=91.56  E-value=0.28  Score=44.63  Aligned_cols=42  Identities=14%  Similarity=0.181  Sum_probs=32.0

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcC
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTM  139 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~  139 (326)
                      .+...+++||||||++..                                ..-|+..++|+.+.+. +.+++.|+
T Consensus        19 ~~~k~i~~D~DGTL~~~~--------------------------------~~~~~~~~~l~~l~~~g~~~~~~Tn   61 (306)
T 2oyc_A           19 GRAQGVLFDCDGVLWNGE--------------------------------RAVPGAPELLERLARAGKAALFVSN   61 (306)
T ss_dssp             HHCSEEEECSBTTTEETT--------------------------------EECTTHHHHHHHHHHTTCEEEEEEC
T ss_pred             hhCCEEEECCCCcEecCC--------------------------------ccCcCHHHHHHHHHHCCCeEEEEEC
Confidence            445679999999999743                                2347788888888755 88888885

>2x4d_A HLHPP, phospholysine phosphohistidine inorganic pyrophos phosphatase; hydrolase; 1.92A {Homo sapiens}

Probab=91.43  E-value=0.48  Score=41.03  Aligned_cols=15  Identities=13%  Similarity=0.268  Sum_probs=13.3

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus        13 k~i~fDlDGTLl~s~   27 (271)
T 2x4d_A           13 RGVLLDISGVLYDSG   27 (271)
T ss_dssp             CEEEECCBTTTEECC
T ss_pred             CEEEEeCCCeEEecC
Confidence            578999999999975

>2amy_A PMM 2, phosphomannomutase 2; HS.459855, HS.313504, BC008310, phosphatase, PFAM PF03332, H superfamily, jaecken disease; 2.09A {Homo sapiens} SCOP: c.108.1.10 PDB: 2q4r_A

Probab=91.39  E-value=0.28  Score=43.18  Aligned_cols=53  Identities=19%  Similarity=0.224  Sum_probs=34.6

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      ++..+++||||||+++..                               .+-|...+.|+++.+...++|.|.-.  |. 
T Consensus         5 ~~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~i~v~iaTGR~--~~-   50 (246)
T 2amy_A            5 GPALCLFDVDGTLTAPRQ-------------------------------KITKEMDDFLQKLRQKIKIGVVGGSD--FE-   50 (246)
T ss_dssp             CSEEEEEESBTTTBCTTS-------------------------------CCCHHHHHHHHHHTTTSEEEEECSSC--HH-
T ss_pred             CceEEEEECCCCcCCCCc-------------------------------ccCHHHHHHHHHHHhCCeEEEEcCCC--HH-
Confidence            456899999999998641                               13455777888887665566666543  32 


Q ss_pred             HHHHHhC
Q 040058          147 AAVKLLD  153 (326)
Q Consensus       147 ~v~~~LD  153 (326)
                      .+.+.|+
T Consensus        51 ~~~~~l~   57 (246)
T 2amy_A           51 KVQEQLG   57 (246)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHhc
Confidence            3455554

>2c4n_A Protein NAGD; nucleotide phosphatase, HAD superfamily, UMP phosphatase, carbohydrate metabolism, hydrolase; 1.8A {Escherichia coli} SCOP: c.108.1.14

Probab=91.01  E-value=0.22  Score=42.41  Aligned_cols=15  Identities=20%  Similarity=0.450  Sum_probs=13.3

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         4 k~i~fDlDGTLl~~~   18 (250)
T 2c4n_A            4 KNVICDIDGVLMHDN   18 (250)
T ss_dssp             CEEEEECBTTTEETT
T ss_pred             cEEEEcCcceEEeCC
Confidence            468999999999986

>3gyg_A NTD biosynthesis operon putative hydrolase NTDB; PF05116, PF08282, MCSG, PSI-2, haloacid dehalogenase-like HY structural genomics; 2.45A {Bacillus subtilis subsp}

Probab=90.98  E-value=0.24  Score=44.48  Aligned_cols=60  Identities=15%  Similarity=0.016  Sum_probs=37.9

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHH---HHHHHhh--cCceEEEEcCCc
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVR---TFLEQAS--SLVDIYLCTMST  141 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~---eFL~~ls--~~yEl~IyT~g~  141 (326)
                      ....+++||||||+++..    ++.                         .++.+.   +.|+.+.  +...+.+.|...
T Consensus        21 ~~kliifDlDGTLlds~i----~~~-------------------------~~~~l~~~~~~l~~~~~~~g~~~~~~tGr~   71 (289)
T 3gyg_A           21 PQYIVFCDFDETYFPHTI----DEQ-------------------------KQQDIYELEDYLEQKSKDGELIIGWVTGSS   71 (289)
T ss_dssp             CSEEEEEETBTTTBCSSC----CHH-------------------------HHHHHHHHHHHHHHHHHTTCEEEEEECSSC
T ss_pred             CCeEEEEECCCCCcCCCC----Ccc-------------------------hHHHHHHHHHHHHHHHhcCCcEEEEEcCCC
Confidence            457899999999999861    110                         122222   3333333  446777888777


Q ss_pred             HHHHHHHHHHhCCC
Q 040058          142 RCYAEAAVKLLDLD  155 (326)
Q Consensus       142 ~~YA~~v~~~LDP~  155 (326)
                      ..-+..+++.+++.
T Consensus        72 ~~~~~~~~~~~g~~   85 (289)
T 3gyg_A           72 IESILDKMGRGKFR   85 (289)
T ss_dssp             HHHHHHHHHHTTCC
T ss_pred             HHHHHHHHHhhccC
Confidence            77778888877653

>2b30_A Pvivax hypothetical protein; SGPP, structural genomics, PSI, protein structure initiative; 2.70A {Plasmodium vivax} SCOP: c.108.1.10

Probab=90.92  E-value=0.27  Score=45.11  Aligned_cols=54  Identities=19%  Similarity=0.149  Sum_probs=40.2

Q ss_pred             eEEEEeCCCceeee-cccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           69 LQLVLNLDHTLLHC-RNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        69 l~LVLDLD~TLIhs-~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ..+++||||||+++ ..                               .+-|...+.|+++.+. ..++|.|.-+..-+.
T Consensus        28 kli~~DlDGTLl~~~~~-------------------------------~is~~~~~al~~l~~~Gi~v~iaTGR~~~~~~   76 (301)
T 2b30_A           28 KLLLIDFDGTLFVDKDI-------------------------------KVPSENIDAIKEAIEKGYMVSICTGRSKVGIL   76 (301)
T ss_dssp             CEEEEETBTTTBCCTTT-------------------------------CSCHHHHHHHHHHHHHTCEEEEECSSCHHHHH
T ss_pred             cEEEEECCCCCcCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence            57899999999987 31                               1335566777777654 888888888887788


Q ss_pred             HHH--HHhC
Q 040058          147 AAV--KLLD  153 (326)
Q Consensus       147 ~v~--~~LD  153 (326)
                      .++  +.++
T Consensus        77 ~~~~~~~l~   85 (301)
T 2b30_A           77 SAFGEENLK   85 (301)
T ss_dssp             HHHCHHHHH
T ss_pred             HHhhHHhhc
Confidence            888  7654

>1yv9_A Hydrolase, haloacid dehalogenase family; hypothetical protein, struc genomics, PSI, protein structure initiative; 2.80A {Enterococcus faecalis} SCOP: c.108.1.14

Probab=90.70  E-value=0.22  Score=43.92  Aligned_cols=16  Identities=19%  Similarity=0.283  Sum_probs=13.5

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus         5 ~k~v~fDlDGTL~~~~   20 (264)
T 1yv9_A            5 YQGYLIDLDGTIYLGK   20 (264)
T ss_dssp             CCEEEECCBTTTEETT
T ss_pred             CCEEEEeCCCeEEeCC
Confidence            3579999999999864

>3r4c_A Hydrolase, haloacid dehalogenase-like hydrolase; haloalkanoate dehalogenase enzyme superfamily, phosphohydrol hydrolase; 1.82A {Bacteroides thetaiotaomicron} SCOP: c.108.1.0

Probab=90.44  E-value=0.2  Score=44.22  Aligned_cols=15  Identities=40%  Similarity=0.465  Sum_probs=12.9

Q ss_pred             ceEEEEeCCCceeee
Q 040058           68 KLQLVLNLDHTLLHC   82 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs   82 (326)
                      -..+++||||||+++
T Consensus        12 iKli~~DlDGTLl~~   26 (268)
T 3r4c_A           12 IKVLLLDVDGTLLSF   26 (268)
T ss_dssp             CCEEEECSBTTTBCT
T ss_pred             eEEEEEeCCCCCcCC
Confidence            357999999999984

>3n28_A Phosphoserine phosphatase; HAD family hydrolase, structural genomics, PSI, protein STRU initiative, nysgrc; 2.30A {Vibrio cholerae}

Probab=90.43  E-value=0.14  Score=47.51  Aligned_cols=93  Identities=9%  Similarity=0.014  Sum_probs=64.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeec---------CCCC------CccccCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARE---------DFNG------KDRKNPD  178 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd---------~~~~------~~~KdL~  178 (326)
                      +.++||+.++|+.+.+. +.+.|.|++...+++.+++.++.. .+|.+.+-..+         +...      .+.+-++
T Consensus       177 ~~~~pg~~~~l~~L~~~g~~~~ivS~~~~~~~~~~~~~lgl~-~~~~~~l~~~d~~~tg~~~~~~~~~kpk~~~~~~~~~  255 (335)
T 3n28_A          177 LPLMPELPELVATLHAFGWKVAIASGGFTYFSDYLKEQLSLD-YAQSNTLEIVSGKLTGQVLGEVVSAQTKADILLTLAQ  255 (335)
T ss_dssp             CCCCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEESCCCCHHHHHHHHHHHHH
T ss_pred             CCcCcCHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCC-eEEeeeeEeeCCeeeeeecccccChhhhHHHHHHHHH
Confidence            46899999999999876 999999999999999999999886 56765432111         1111      1222344


Q ss_pred             CCCCCCCcEEEEeCCchhhccCCCCeEEeC
Q 040058          179 LVRGQERGIVILDDTESVWSDHTENLIVLG  208 (326)
Q Consensus       179 ~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~  208 (326)
                      .++.+++.++.|+|+..-...-...++.|.
T Consensus       256 ~lgi~~~~~v~vGDs~nDi~~a~~aG~~va  285 (335)
T 3n28_A          256 QYDVEIHNTVAVGDGANDLVMMAAAGLGVA  285 (335)
T ss_dssp             HHTCCGGGEEEEECSGGGHHHHHHSSEEEE
T ss_pred             HcCCChhhEEEEeCCHHHHHHHHHCCCeEE
Confidence            567788999999999854432233444443

>3l7y_A Putative uncharacterized protein SMU.1108C; hydrolase; 2.00A {Streptococcus mutans}

Probab=90.31  E-value=0.14  Score=46.55  Aligned_cols=16  Identities=19%  Similarity=0.358  Sum_probs=13.9

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus        37 iKli~fDlDGTLld~~   52 (304)
T 3l7y_A           37 VKVIATDMDGTFLNSK   52 (304)
T ss_dssp             CSEEEECCCCCCSCTT
T ss_pred             eEEEEEeCCCCCCCCC
Confidence            4679999999999875

>2etx_A Mediator of DNA damage checkpoint protein 1; tandem BRCT domains histone gamma-H2AX, cell cycle; 1.33A {Homo sapiens} PDB: 2azm_A* 3k05_A* 2ado_A

Probab=90.24  E-value=0.39  Score=41.95  Aligned_cols=29  Identities=7%  Similarity=0.151  Sum_probs=24.6

Q ss_pred             hhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          296 LVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       296 a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      +.+.|+++|+++||.+|+.. ++.+++.|.
T Consensus       172 ~~~~~i~vvs~eWi~~sI~~-q~ld~e~y~  200 (209)
T 2etx_A          172 PLRVGLPLLSPEFLLTGVLK-QEAKPEAFV  200 (209)
T ss_dssp             HHHHTCCEECTHHHHHHHHH-TCCCGGGGB
T ss_pred             HHHCCCeEEcHHHHHHHHHh-cccChHHhe
Confidence            44568899999999999998 777888885

>3f9r_A Phosphomannomutase; trypanosome glycobiology structural genomics, isomerase, structural genomics consortium, SGC; 1.85A {Trypanosoma brucei} SCOP: c.108.1.0 PDB: 2i54_A* 2i55_A*

Probab=89.89  E-value=0.4  Score=42.75  Aligned_cols=53  Identities=19%  Similarity=0.135  Sum_probs=36.8

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAE  146 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~  146 (326)
                      ...+++||||||+++..                               .+-|...+.|+++.+. ..++|.|.-...   
T Consensus         4 ~kli~~DlDGTLl~~~~-------------------------------~i~~~~~~~l~~l~~~g~~~~iaTGR~~~---   49 (246)
T 3f9r_A            4 RVLLLFDVDGTLTPPRL-------------------------------CQTDEMRALIKRARGAGFCVGTVGGSDFA---   49 (246)
T ss_dssp             SEEEEECSBTTTBSTTS-------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCHH---
T ss_pred             ceEEEEeCcCCcCCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEECCCCHH---
Confidence            46789999999998752                               1345677788888766 777777766555   


Q ss_pred             HHHHHhCC
Q 040058          147 AAVKLLDL  154 (326)
Q Consensus       147 ~v~~~LDP  154 (326)
                      .+.+.|+.
T Consensus        50 ~~~~~l~~   57 (246)
T 3f9r_A           50 KQVEQLGR   57 (246)
T ss_dssp             HHHHHHCT
T ss_pred             HHHHHhhh
Confidence            34555553

>3ii6_X DNA ligase 4; XRCC4, NHEJ, DNA repair, BRCT, alternative splicing, coiled coil, DNA damage, DNA recombination, isopeptide bond, nucleus; HET: DNA; 2.40A {Homo sapiens} PDB: 2e2w_A*

Probab=89.69  E-value=0.55  Score=42.70  Aligned_cols=31  Identities=16%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             HHhhhCC-ceEEchHHHHHHHHHhcCCCCCCC
Q 040058          294 KFLVQEK-KFLVHPRWIDAYYFLWRRRPEDDY  324 (326)
Q Consensus       294 ~~a~~~~-~~vV~p~Wl~~~~~~w~r~~E~~f  324 (326)
                      +.+.+.| +.||+|.||.+|+...+-.|-+.|
T Consensus        62 ~~~~~~g~~~IV~p~Wv~Dci~~~~llp~~p~   93 (263)
T 3ii6_X           62 KNIILSNKHDVVKPAWLLECFKTKSFVPWQPR   93 (263)
T ss_dssp             HHHHHSCSCCEECHHHHHHHHHHTSCCCCCGG
T ss_pred             HHHHhcCCCCEeehHHHHHHHhcCCcCCCCHH
Confidence            3455655 899999999999999887776543

>2rbk_A Putative uncharacterized protein; HAD-like phosphatase, unknown function; 1.00A {Bacteroides thetaiotaomicron} SCOP: c.108.1.10 PDB: 1ymq_A 2rb5_A 2rav_A 2rar_A

Probab=89.56  E-value=0.088  Score=46.76  Aligned_cols=54  Identities=19%  Similarity=0.203  Sum_probs=34.9

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++...                              .+-|...+.|+++.+. ..+++.|.-+ ..+..
T Consensus         3 kli~~DlDGTLl~~~~~------------------------------~i~~~~~~al~~l~~~G~~~~iaTGR~-~~~~~   51 (261)
T 2rbk_A            3 KALFFDIDGTLVSFETH------------------------------RIPSSTIEALEAAHAKGLKIFIATGRP-KAIIN   51 (261)
T ss_dssp             CEEEECSBTTTBCTTTS------------------------------SCCHHHHHHHHHHHHTTCEEEEECSSC-GGGCC
T ss_pred             cEEEEeCCCCCcCCCCC------------------------------cCCHHHHHHHHHHHHCCCEEEEECCCh-HHHHH
Confidence            36899999999997521                              0334556666666554 7777777665 55555


Q ss_pred             HHHHhC
Q 040058          148 AVKLLD  153 (326)
Q Consensus       148 v~~~LD  153 (326)
                      +++.++
T Consensus        52 ~~~~l~   57 (261)
T 2rbk_A           52 NLSELQ   57 (261)
T ss_dssp             SCHHHH
T ss_pred             HHHHhC
Confidence            555544

>1u02_A Trehalose-6-phosphate phosphatase related protein; structural genomics, PSI; 1.92A {Thermoplasma acidophilum} SCOP: c.108.1.15

Probab=89.25  E-value=0.22  Score=43.91  Aligned_cols=58  Identities=14%  Similarity=0.041  Sum_probs=38.0

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v  148 (326)
                      ..+++||||||+.....+.   .                       -.+-|...+.|+++.+.-.++|.|.-+...+..+
T Consensus         2 kli~~DlDGTLl~~~~~~~---~-----------------------~~i~~~~~~al~~l~~~g~v~iaTGR~~~~~~~~   55 (239)
T 1u02_A            2 SLIFLDYDGTLVPIIMNPE---E-----------------------SYADAGLLSLISDLKERFDTYIVTGRSPEEISRF   55 (239)
T ss_dssp             CEEEEECBTTTBCCCSCGG---G-----------------------CCCCHHHHHHHHHHHHHSEEEEECSSCHHHHHHH
T ss_pred             eEEEEecCCCCcCCCCCcc---c-----------------------CCCCHHHHHHHHHHhcCCCEEEEeCCCHHHHHHH
Confidence            3689999999998643210   0                       0255777888888864337777777666666666


Q ss_pred             HHHh
Q 040058          149 VKLL  152 (326)
Q Consensus       149 ~~~L  152 (326)
                      ++.+
T Consensus        56 ~~~l   59 (239)
T 1u02_A           56 LPLD   59 (239)
T ss_dssp             SCSS
T ss_pred             hccc
Confidence            5444

>1rlm_A Phosphatase; HAD family, rossman fold, hydrolase; 1.90A {Escherichia coli} SCOP: c.108.1.10 PDB: 1rlt_A 1rlo_A* 2hf2_A

Probab=89.09  E-value=0.21  Score=44.61  Aligned_cols=54  Identities=9%  Similarity=0.022  Sum_probs=33.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCcc-HHHHHHHhhc-CceEEEEcCCcHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPF-VRTFLEQASS-LVDIYLCTMSTRCYAE  146 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPg-l~eFL~~ls~-~yEl~IyT~g~~~YA~  146 (326)
                      ..+++||||||+++...                               +-|. +.+.|+++.+ -..++|.|.-+..-+.
T Consensus         4 kli~~DlDGTLl~~~~~-------------------------------i~~~~~~~al~~l~~~G~~~~iaTGR~~~~~~   52 (271)
T 1rlm_A            4 KVIVTDMDGTFLNDAKT-------------------------------YNQPRFMAQYQELKKRGIKFVVASGNQYYQLI   52 (271)
T ss_dssp             CEEEECCCCCCSCTTSC-------------------------------CCHHHHHHHHHHHHHHTCEEEEECSSCHHHHG
T ss_pred             cEEEEeCCCCCCCCCCc-------------------------------CCHHHHHHHHHHHHHCCCEEEEEeCCcHHHHH
Confidence            47899999999987421                               2233 3555666654 3677777766655555


Q ss_pred             HHHHHhC
Q 040058          147 AAVKLLD  153 (326)
Q Consensus       147 ~v~~~LD  153 (326)
                      .+++.+.
T Consensus        53 ~~~~~l~   59 (271)
T 1rlm_A           53 SFFPELK   59 (271)
T ss_dssp             GGCTTTT
T ss_pred             HHHHhcC
Confidence            5554443

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=88.62  E-value=0.17  Score=42.02  Aligned_cols=82  Identities=11%  Similarity=0.062  Sum_probs=56.5

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecC----------CCC-----CccccCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIARED----------FNG-----KDRKNPD  178 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~----------~~~-----~~~KdL~  178 (326)
                      ..+.|++.++|+.+.+. +.+.|+|++...++..+++.++.. .+|...+...+.          +..     ...+-++
T Consensus        75 ~~l~~~~~~~l~~l~~~g~~~~i~T~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~K~~~l~~~~~  153 (211)
T 1l7m_A           75 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLD-YAFANRLIVKDGKLTGDVEGEVLKENAKGEILEKIAK  153 (211)
T ss_dssp             CCBCTTHHHHHHHHHHTTEEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEEEETTEEEEEEECSSCSTTHHHHHHHHHHH
T ss_pred             CCCCccHHHHHHHHHHCCCEEEEEcCCcHHHHHHHHHHcCCC-eEEEeeeEEECCEEcCCcccCccCCccHHHHHHHHHH
Confidence            45789999999999876 999999999999999999988775 356543332221          111     0111123


Q ss_pred             CCCCCCCcEEEEeCCchhh
Q 040058          179 LVRGQERGIVILDDTESVW  197 (326)
Q Consensus       179 ~l~~~~~~vvIvDD~~~vw  197 (326)
                      .++.+++.++.|.|+..=.
T Consensus       154 ~lgi~~~~~~~iGD~~~Di  172 (211)
T 1l7m_A          154 IEGINLEDTVAVGDGANDI  172 (211)
T ss_dssp             HHTCCGGGEEEEECSGGGH
T ss_pred             HcCCCHHHEEEEecChhHH
Confidence            3566788899999997433

>1l7m_A Phosphoserine phosphatase; rossmann fold, four-helix bundle, B-hairpin, structural genomics, BSGC structure funded by NIH; 1.48A {Methanocaldococcus jannaschii} SCOP: c.108.1.4 PDB: 1f5s_A 1l7n_A 1l7p_A* 1l7o_A* 1j97_A*

Probab=88.11  E-value=0.51  Score=39.10  Aligned_cols=16  Identities=25%  Similarity=0.478  Sum_probs=13.8

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus         5 ~k~i~fDlDGTL~d~~   20 (211)
T 1l7m_A            5 KKLILFDFDSTLVNNE   20 (211)
T ss_dssp             CEEEEEECCCCCBSSC
T ss_pred             CcEEEEeCCCCCCCcc
Confidence            3578999999999984

>3zx4_A MPGP, mannosyl-3-phosphoglycerate phosphatase; hydrolase, haloalkanoid acid dehalogenase-like phosphatase, crystallographic snapshot; HET: 2M8; 1.74A {Thermus thermophilus} PDB: 3zty_A 3zu6_A* 3ztw_A* 3zw7_A* 3zwd_A* 3zwk_A 3zup_A* 3zx5_A*

Probab=87.64  E-value=0.52  Score=41.66  Aligned_cols=15  Identities=40%  Similarity=0.525  Sum_probs=13.1

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      +.+++||||||+++.
T Consensus         1 ~li~~DlDGTLl~~~   15 (259)
T 3zx4_A            1 MIVFTDLDGTLLDER   15 (259)
T ss_dssp             CEEEECCCCCCSCSS
T ss_pred             CEEEEeCCCCCcCCC
Confidence            468999999999875

>1q92_A 5(3)-deoxyribonucleotidase; alpha-beta rossman fold, hydrolase; HET: DRM; 1.40A {Homo sapiens} SCOP: c.108.1.8 PDB: 1mh9_A* 1q91_A* 1z4m_A* 1z4i_A* 1z4j_A* 1z4l_A* 1z4k_A* 1z4p_X* 1z4q_A* 2jau_A* 2jaw_A* 3u19_A* 3u13_A 4e88_A

Probab=87.57  E-value=0.17  Score=43.03  Aligned_cols=18  Identities=22%  Similarity=0.495  Sum_probs=15.4

Q ss_pred             CceEEEEeCCCceeeecc
Q 040058           67 RKLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~   84 (326)
                      ++..++|||||||++|..
T Consensus         3 ~~k~viFDlDGTL~Ds~~   20 (197)
T 1q92_A            3 RALRVLVDMDGVLADFEG   20 (197)
T ss_dssp             CCEEEEECSBTTTBCHHH
T ss_pred             CceEEEEeCCCCCccCcH
Confidence            456899999999999974

>2ep8_A Pescadillo homolog 1; A/B/A 3 layers, nucleolus, ribosome biogenesis, DNA damage, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.74  E-value=0.55  Score=36.63  Aligned_cols=27  Identities=19%  Similarity=0.331  Sum_probs=24.3

Q ss_pred             CCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          299 EKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       299 ~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      .+..+|.|.||.+|+..=+..|++.|.
T Consensus        74 ~~r~~VqPqWV~Dcin~~~lLp~~~Y~  100 (100)
T 2ep8_A           74 IGRCYVQPQWVFDSVNARLLLPVAEYF  100 (100)
T ss_dssp             TTBEEECTHHHHHHHHHTSCCCTTTCC
T ss_pred             CCCeEEcchHHHHHHhcCCcCChhhcC
Confidence            467999999999999999999999884

>2vxb_A DNA repair protein RHP9; BRCT, nucleus, cell cycle, DNA damage, DNA replication inhibitor, phosphoprotein, checkpoint signalling; HET: DNA; 2.3A {Schizosaccharomyces pombe} PDB: 2vxc_A*

Probab=85.61  E-value=0.32  Score=43.77  Aligned_cols=32  Identities=22%  Similarity=0.142  Sum_probs=26.8

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      ..|...|+.||+|.||.+|+..=+-.|++.|+
T Consensus        84 ~~ala~gipiV~~~Wi~dc~~~~~~~~~~~yl  115 (241)
T 2vxb_A           84 LEALAFNIPCVHPQFIKQCLKMNRVVDFSPYL  115 (241)
T ss_dssp             HHHHHHTCCEECTHHHHHHHHHTSCCCSGGGB
T ss_pred             HHHHHcCCCEecHHHHHHHHHcCCcCChhhcc
Confidence            34556799999999999999998888888764

>2hcf_A Hydrolase, haloacid dehalogenase-like family; NP_662590.1, ST genomics, PSI-2, protein structure initiative; 1.80A {Chlorobaculum tepidum} SCOP: c.108.1.6

Probab=83.53  E-value=0.44  Score=40.32  Aligned_cols=16  Identities=25%  Similarity=0.488  Sum_probs=13.8

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~iifDlDGTL~d~~~   20 (234)
T 2hcf_A            5 TLVLFDIDGTLLKVES   20 (234)
T ss_dssp             EEEEECCBTTTEEECT
T ss_pred             eEEEEcCCCCcccCcc
Confidence            4789999999999863

>2p11_A Hypothetical protein; putative haloacid dehalogenase-like hydrolase, structural GE joint center for structural genomics, JCSG; 2.20A {Burkholderia xenovorans}

Probab=83.37  E-value=0.38  Score=41.47  Aligned_cols=17  Identities=24%  Similarity=0.475  Sum_probs=14.5

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++||||||++|..
T Consensus        11 ~k~viFDlDGTL~ds~~   27 (231)
T 2p11_A           11 DIVFLFDCDNTLLDNDH   27 (231)
T ss_dssp             SEEEEECCBTTTBCHHH
T ss_pred             CeEEEEcCCCCCEecHH
Confidence            45899999999999873

>3d6j_A Putative haloacid dehalogenase-like hydrolase; structural genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides fragilis nctc 9343}

Probab=83.25  E-value=0.42  Score=39.86  Aligned_cols=15  Identities=20%  Similarity=0.297  Sum_probs=13.3

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         7 k~v~fDlDGTL~d~~   21 (225)
T 3d6j_A            7 TVYLFDFDYTLADSS   21 (225)
T ss_dssp             SEEEECCBTTTEECH
T ss_pred             CEEEEeCCCCCCCCH
Confidence            478999999999985

>2ah5_A COG0546: predicted phosphatases; MCSG, structural genomics, hydrola haloacid dehalogenase-like, PSI; 1.74A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=82.92  E-value=0.45  Score=40.36  Aligned_cols=16  Identities=25%  Similarity=0.391  Sum_probs=13.8

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~viFDlDGTL~d~~~   20 (210)
T 2ah5_A            5 TAIFFDLDGTLVDSSI   20 (210)
T ss_dssp             CEEEECSBTTTEECHH
T ss_pred             CEEEEcCCCcCccCHH
Confidence            4789999999999863

>2fi1_A Hydrolase, haloacid dehalogenase-like family; structural genomics, haloacid dehalogenase-like F PSI, protein structure initiative; 1.40A {Streptococcus pneumoniae} SCOP: c.108.1.3

Probab=82.91  E-value=0.35  Score=39.67  Aligned_cols=15  Identities=27%  Similarity=0.304  Sum_probs=13.2

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         7 k~i~fDlDGTL~d~~   21 (190)
T 2fi1_A            7 HDYIWDLGGTLLDNY   21 (190)
T ss_dssp             SEEEECTBTTTBCHH
T ss_pred             cEEEEeCCCCcCCCH
Confidence            478999999999975

>2b0c_A Putative phosphatase; alpha-D-glucose-1-phosphate, structural genomic protein structure initiative, midwest center for structural genomics, MCSG; HET: G1P; 2.00A {Escherichia coli} SCOP: c.108.1.2

Probab=82.71  E-value=0.48  Score=39.36  Aligned_cols=16  Identities=13%  Similarity=0.430  Sum_probs=14.1

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus         7 ~k~viFDlDGTL~d~~   22 (206)
T 2b0c_A            7 KMLYIFDLGNVIVDID   22 (206)
T ss_dssp             CCEEEECCBTTTEEEE
T ss_pred             ccEEEEcCCCeeecCc
Confidence            3579999999999986

>1kzy_C Tumor suppressor P53-binding protein 1; tandem-BRCT and linker complexed with non-BRCT protein, three-helix bundle, parallel beta sheet; 2.50A {Homo sapiens} SCOP: c.15.1.4 c.15.1.4 PDB: 1gzh_B

Probab=82.44  E-value=0.5  Score=42.92  Aligned_cols=31  Identities=13%  Similarity=0.162  Sum_probs=26.4

Q ss_pred             HhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          295 FLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       295 ~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      .|...|+.||+|.||.+|+..=+-.|++.|.
T Consensus       104 ~ala~g~~iVs~~Wl~dc~~~~~~l~~~~Y~  134 (259)
T 1kzy_C          104 LCLASGIPCVSHVWVHDSCHANQLQNYRNYL  134 (259)
T ss_dssp             HHHHHTCCEEETHHHHHHHHHTSCCCGGGSB
T ss_pred             HHHhcCCCCccHHHHHHHHHcCCcCCHHHcc
Confidence            4555799999999999999988888888774

>2go7_A Hydrolase, haloacid dehalogenase-like family; structural genomics, joint center for structural genomics, J protein structure initiative; 2.10A {Streptococcus pneumoniae} SCOP: c.108.1.6

Probab=82.42  E-value=0.45  Score=38.90  Aligned_cols=16  Identities=31%  Similarity=0.470  Sum_probs=13.6

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~i~fDlDGTL~~~~~   20 (207)
T 2go7_A            5 TAFIWDLDGTLLDSYE   20 (207)
T ss_dssp             CEEEECTBTTTEECHH
T ss_pred             cEEEEeCCCcccccHH
Confidence            4789999999998863

>4ex6_A ALNB; modified rossman fold, phosphatase, magnesium binding, hydro; 1.25A {Streptomyces SP} PDB: 4ex7_A

Probab=82.17  E-value=0.5  Score=40.19  Aligned_cols=18  Identities=28%  Similarity=0.361  Sum_probs=15.4

Q ss_pred             cCceEEEEeCCCceeeec
Q 040058           66 ERKLQLVLNLDHTLLHCR   83 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~   83 (326)
                      .+-..+++||||||+++.
T Consensus        17 ~~ik~i~fDlDGTL~d~~   34 (237)
T 4ex6_A           17 AADRGVILDLDGTLADTP   34 (237)
T ss_dssp             CCCEEEEECSBTTTBCCH
T ss_pred             ccCCEEEEcCCCCCcCCH
Confidence            556789999999999876

>1z56_C DNA ligase IV; DNA repair, BRCT, NHEJ, XRCC4, DNA ligase, coiled-coil; HET: DNA; 3.92A {Saccharomyces cerevisiae}

Probab=82.09  E-value=0.34  Score=43.71  Aligned_cols=31  Identities=19%  Similarity=0.236  Sum_probs=26.0

Q ss_pred             HHhhhCCceEEchHHHHHHHHHhcCCCCCCC
Q 040058          294 KFLVQEKKFLVHPRWIDAYYFLWRRRPEDDY  324 (326)
Q Consensus       294 ~~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f  324 (326)
                      +.+.+.|+.||+|.||.+|+..++..|.+.|
T Consensus        68 ~~~~~~~~~vV~p~Wv~dci~~~~llp~~~y   98 (264)
T 1z56_C           68 KALIDRGYDILHPNWVLDCIAYKRLILIEPN   98 (264)
T ss_dssp             GGGTTTTCCCBCSSTTHHHHSSCSCCCCCSC
T ss_pred             HHHHhCCCCEEechHHHHHhhcCCCCCCChH
Confidence            3444557999999999999999999998876

>2hdo_A Phosphoglycolate phosphatase; NP_784602.1, structur genomics, PSI-2, protein structure initiative, joint center structural genomics; HET: MSE; 1.50A {Lactobacillus plantarum} SCOP: c.108.1.6

Probab=81.64  E-value=0.49  Score=39.56  Aligned_cols=15  Identities=27%  Similarity=0.492  Sum_probs=13.4

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         5 k~iifDlDGTL~d~~   19 (209)
T 2hdo_A            5 QALMFDIDGTLTNSQ   19 (209)
T ss_dssp             SEEEECSBTTTEECH
T ss_pred             cEEEEcCCCCCcCCH
Confidence            478999999999986

>1l7b_A DNA ligase; BRCT, autostructure, structural genomics, NESG, PSI, protein structure initiative, northeast structural genomics consortium; HET: DNA; NMR {Thermus thermophilus} SCOP: c.15.1.2

Probab=81.48  E-value=1.7  Score=33.28  Aligned_cols=42  Identities=2%  Similarity=-0.273  Sum_probs=34.1

Q ss_pred             CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHH
Q 040058          273 SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYF  314 (326)
Q Consensus       273 ~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~  314 (326)
                      .|.+++|+|.++.   .+..+++                          .+.|.+.|++||+..|+.+.+.
T Consensus         9 ~G~~~v~TG~l~~~R~e~~~~i~~~Gg~v~~sVskkt~~LV~g~~~gsK~~kA~~lgI~Ii~E~~f~~~l~   79 (92)
T 1l7b_A            9 KGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLE   79 (92)
T ss_dssp             TTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHH
T ss_pred             CCcEEEEecCCCCCHHHHHHHHHHcCCEEeCcccCCeeEEEeCCCCChHHHHHHHcCCcEEeHHHHHHHHH
Confidence            8999999999875   5555665                          2568889999999999988775

>3e58_A Putative beta-phosphoglucomutase; structu genomics, PSI-2, protein structure initiative, midwest CENT structural genomics; 1.86A {Streptococcus thermophilus lmg 18311}

Probab=81.46  E-value=0.51  Score=38.88  Aligned_cols=17  Identities=12%  Similarity=0.366  Sum_probs=14.2

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++||||||+++..
T Consensus         5 ~k~i~fDlDGTL~~~~~   21 (214)
T 3e58_A            5 VEAIIFDMDGVLFDTEK   21 (214)
T ss_dssp             CCEEEEESBTTTBCCHH
T ss_pred             ccEEEEcCCCCccccHH
Confidence            35789999999999763

>3fvv_A Uncharacterized protein; unknown function, structural genomics, PSI,MCSG, protein STR initiative, midwest center for structural genomics; 2.10A {Bordetella pertussis}

Probab=81.42  E-value=0.53  Score=40.16  Aligned_cols=17  Identities=35%  Similarity=0.528  Sum_probs=14.3

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++||||||+++..
T Consensus         4 ~k~viFDlDGTL~d~~~   20 (232)
T 3fvv_A            4 RRLALFDLDHTLLPLDS   20 (232)
T ss_dssp             CEEEEECCBTTTBSSCH
T ss_pred             CcEEEEeCCCCCcCCch
Confidence            35789999999999863

>3ddh_A Putative haloacid dehalogenase-like family hydrol; hydrolase, HAD superfamily, ST genomics, PSI-2, protein structure initiative; 2.00A {Bacteroides thetaiotaomicron}

Probab=81.32  E-value=0.55  Score=39.30  Aligned_cols=17  Identities=18%  Similarity=0.171  Sum_probs=14.3

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++||||||+++..
T Consensus         8 ik~i~fDlDGTL~~~~~   24 (234)
T 3ddh_A            8 IKVIAFDADDTLWSNEP   24 (234)
T ss_dssp             CCEEEECCBTTTBCCHH
T ss_pred             ccEEEEeCCCCCccCcc
Confidence            35789999999999863

>2wf7_A Beta-PGM, beta-phosphoglucomutase; transition state analogue, haloacid dehalogenase superfamily, isomerase, phosphotransferase; HET: G7P; 1.05A {Lactococcus lactis} PDB: 1o03_A* 1z4n_A* 1z4o_A* 1zol_A 2wf5_A* 2wf6_A* 1o08_A* 2wf8_A* 2wf9_A* 2wfa_A 2whe_A 1lvh_A* 3fm9_A

Probab=81.17  E-value=0.42  Score=39.91  Aligned_cols=16  Identities=13%  Similarity=0.304  Sum_probs=13.5

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         3 k~i~fDlDGTL~d~~~   18 (221)
T 2wf7_A            3 KAVLFDLDGVITDTAE   18 (221)
T ss_dssp             CEEEECCBTTTBTHHH
T ss_pred             cEEEECCCCcccCChH
Confidence            3689999999999763

>2pke_A Haloacid delahogenase-like family hydrolase; NP_639141.1, ST genomics, joint center for structural genomics, JCSG; 1.81A {Xanthomonas campestris PV}

Probab=81.09  E-value=0.49  Score=40.99  Aligned_cols=16  Identities=19%  Similarity=0.196  Sum_probs=13.8

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus        14 k~iifDlDGTL~d~~~   29 (251)
T 2pke_A           14 QLVGFDGDDTLWKSED   29 (251)
T ss_dssp             CEEEECCBTTTBCCHH
T ss_pred             eEEEEeCCCCCccCcH
Confidence            4799999999999763

>2hi0_A Putative phosphoglycolate phosphatase; YP_619066.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.51A {Lactobacillus delbrueckii}

Probab=80.92  E-value=0.54  Score=40.65  Aligned_cols=16  Identities=19%  Similarity=0.389  Sum_probs=13.7

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~viFDlDGTL~ds~~   20 (240)
T 2hi0_A            5 KAAIFDMDGTILDTSA   20 (240)
T ss_dssp             SEEEECSBTTTEECHH
T ss_pred             cEEEEecCCCCccCHH
Confidence            4689999999999863

>3cnh_A Hydrolase family protein; NP_295428.1, predicted hydrolase of haloacid dehalogenase-LI superfamily; HET: MSE PG4; 1.66A {Deinococcus radiodurans R1}

Probab=80.88  E-value=0.56  Score=38.89  Aligned_cols=15  Identities=20%  Similarity=0.217  Sum_probs=13.3

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         5 k~viFDlDGTL~d~~   19 (200)
T 3cnh_A            5 KALFWDIGGVLLTNG   19 (200)
T ss_dssp             CEEEECCBTTTBCCS
T ss_pred             eEEEEeCCCeeECCC
Confidence            478999999999976

>1te2_A Putative phosphatase; structural genomics, phosphates, PSI, protein S initiative, midwest center for structural genomics, MCSG; HET: MSE; 1.76A {Escherichia coli} SCOP: c.108.1.6

Probab=80.75  E-value=0.52  Score=39.31  Aligned_cols=17  Identities=18%  Similarity=0.382  Sum_probs=14.1

Q ss_pred             ceEEEEeCCCceeeecc
Q 040058           68 KLQLVLNLDHTLLHCRN   84 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~   84 (326)
                      ...+++||||||+++..
T Consensus         9 ~k~i~fDlDGTL~~~~~   25 (226)
T 1te2_A            9 ILAAIFDMDGLLIDSEP   25 (226)
T ss_dssp             CCEEEECCBTTTBCCHH
T ss_pred             CCEEEECCCCCcCcCHH
Confidence            35789999999998763

>3mc1_A Predicted phosphatase, HAD family; PSI2, NYSGXRC, structural genomics, protein structure initiative; 1.93A {Clostridium acetobutylicum} SCOP: c.108.1.0

Probab=80.65  E-value=0.53  Score=39.64  Aligned_cols=16  Identities=25%  Similarity=0.343  Sum_probs=13.7

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~i~fDlDGTL~d~~~   20 (226)
T 3mc1_A            5 NYVLFDLDGTLTDSAE   20 (226)
T ss_dssp             CEEEECSBTTTBCCHH
T ss_pred             CEEEEeCCCccccCHH
Confidence            5789999999999863

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=80.54  E-value=0.52  Score=41.32  Aligned_cols=15  Identities=13%  Similarity=0.321  Sum_probs=13.0

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||++|.
T Consensus        27 KaViFDlDGTLvDs~   41 (250)
T 4gib_A           27 EAFIFDLDGVITDTA   41 (250)
T ss_dssp             CEEEECTBTTTBCCH
T ss_pred             heeeecCCCcccCCH
Confidence            468999999999875

>3pc7_A DNA ligase 3; DNA repair, BRCT domain, protein:protein interactions, XRCC1 domain, DNA binding protein; HET: DNA MSE; 1.65A {Homo sapiens} SCOP: c.15.1.2 PDB: 3pc8_C* 1imo_A* 1in1_A* 3qvg_A*

Probab=80.51  E-value=1.3  Score=33.89  Aligned_cols=23  Identities=26%  Similarity=0.212  Sum_probs=17.8

Q ss_pred             hCCceEEchHHHHHHHHHhcCCC
Q 040058          298 QEKKFLVHPRWIDAYYFLWRRRP  320 (326)
Q Consensus       298 ~~~~~vV~p~Wl~~~~~~w~r~~  320 (326)
                      ..+...|+|+||++|+..=+-.+
T Consensus        64 ~~~~~~V~p~WI~dcI~k~~Ll~   86 (88)
T 3pc7_A           64 NPAAQQVSPEWIWACIRKRRLVA   86 (88)
T ss_dssp             CTTSEEECHHHHHHHHHHTSCCS
T ss_pred             CCCCcEEchHHHHHHHhCCcccC
Confidence            35789999999999997644433

>3kd3_A Phosphoserine phosphohydrolase-like protein; csgid, niaid, S genomics, national institute of allergy and infectious DISE (niaid); 1.70A {Francisella tularensis subsp}

Probab=80.32  E-value=0.61  Score=38.64  Aligned_cols=15  Identities=20%  Similarity=0.505  Sum_probs=13.1

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+++||||||+++.
T Consensus         5 k~i~fDlDGTL~d~~   19 (219)
T 3kd3_A            5 KNIIFDFDSTLIKKE   19 (219)
T ss_dssp             EEEEECCCCCCBSSC
T ss_pred             eEEEEeCCCCCcCcc
Confidence            578999999999865

>1zrn_A L-2-haloacid dehalogenase; hydrolase; 1.83A {Pseudomonas SP} SCOP: c.108.1.1 PDB: 1zrm_A 1jud_A 1qh9_A

Probab=80.32  E-value=0.56  Score=39.83  Aligned_cols=16  Identities=19%  Similarity=0.297  Sum_probs=13.6

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~viFDlDGTL~d~~~   20 (232)
T 1zrn_A            5 KGIAFDLYGTLFDVHS   20 (232)
T ss_dssp             CEEEECSBTTTEETHH
T ss_pred             eEEEEecCCcccCchh
Confidence            4789999999999763

>2fdr_A Conserved hypothetical protein; SAD, structural genomics, agrobacter tumefaciens, HAD-superfamily hydrolase; 2.00A {Agrobacterium tumefaciens str} SCOP: c.108.1.6

Probab=80.22  E-value=0.59  Score=39.33  Aligned_cols=16  Identities=13%  Similarity=0.214  Sum_probs=13.8

Q ss_pred             eEEEEeCCCceeeecc
Q 040058           69 LQLVLNLDHTLLHCRN   84 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~   84 (326)
                      ..+++||||||+++..
T Consensus         5 k~i~fDlDGTL~d~~~   20 (229)
T 2fdr_A            5 DLIIFDCDGVLVDSEI   20 (229)
T ss_dssp             SEEEECSBTTTBCCHH
T ss_pred             cEEEEcCCCCcCccHH
Confidence            5789999999999863

>1nnl_A L-3-phosphoserine phosphatase; PSP, HPSP, phospho-aspartyl, hydrolase; 1.53A {Homo sapiens} SCOP: c.108.1.4 PDB: 1l8l_A* 1l8o_A

Probab=80.16  E-value=0.57  Score=39.83  Aligned_cols=16  Identities=13%  Similarity=0.268  Sum_probs=13.7

Q ss_pred             ceEEEEeCCCceeeec
Q 040058           68 KLQLVLNLDHTLLHCR   83 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~   83 (326)
                      ...+++||||||+++.
T Consensus        14 ~k~viFD~DGTLvd~~   29 (225)
T 1nnl_A           14 ADAVCFDVDSTVIREE   29 (225)
T ss_dssp             CSEEEEETBTTTBSSC
T ss_pred             CCEEEEeCcccccccc
Confidence            3478999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	326
d1ta0a_	181	c.108.1.16 (A:) Carboxy-terminal domain RNA polyme	4e-22

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]} Length = 181

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 89.3 bits (221), Expect = 4e-22
 Identities = 39/205 (19%), Positives = 75/205 (36%), Gaps = 35/205 (17%)

Query: 62  SEQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFV 121
             Q+  K+ +V++LD TL+H           K +          +  + +   V  RP V
Sbjct: 9   KAQDSDKICVVIDLDETLVHSS--------FKPVNNADFIIPVEIDGVVHQVYVLKRPHV 60

Query: 122 RTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDF-NGKDRKNPDLV 180
             FL++   L +  L T S   YA+    LLD    + +        F  G   K+   +
Sbjct: 61  DEFLQRMGELFECVLFTASLAKYADPVADLLDKWGAFRARLFRESCVFHRGNYVKDLSRL 120

Query: 181 RGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKELNGDHKSYSETLTDESENEEALA 240
               R ++ILD++ + +  H +N + +  +                      + ++  L 
Sbjct: 121 GRDLRRVLILDNSPASYVFHPDNAVPVASWFD--------------------NMSDTELH 160

Query: 241 NVLRVLKTIHRLFFDSVCGDVRTYL 265
           ++L   + + R        DV + L
Sbjct: 161 DLLPFFEQLSR------VDDVYSVL 179

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	326
d1ta0a_	181	Carboxy-terminal domain RNA polymerase II polypept	100.0
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	98.86
d1t15a2	102	Breast cancer associated protein, BRCA1 {Human (Ho	98.61
d2hdoa1	207	Phosphoglycolate phosphatase {Lactobacillus planta	98.29
d1ltqa1	149	Polynucleotide kinase, phosphatase domain {Bacteri	98.28
d2go7a1	204	Hypothetical protein SP2064 {Streptococcus pneumon	98.27
d1wf6a_	132	DNA topoisomerase II binding protein 1, TopBP1 {Hu	98.27
d2ah5a1	210	predicted phosphatase SP0104 {Streptococcus pneumo	98.26
d2hsza1	224	Phosphoglycolate phosphatase Gph {Haemophilus somn	98.21
d1t15a1	109	Breast cancer associated protein, BRCA1 {Human (Ho	98.02
d2hcfa1	228	Hypothetical protein CT1708 {Chlorobium tepidum [T	98.01
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	97.94
d1cdza_	96	DNA-repair protein XRCC1 {Human (Homo sapiens) [Ta	97.81
d2obba1	122	Hypothetical protein BT0820 {Bacteroides thetaiota	97.79
d2fdra1	222	Hypothetical protein Atu0790 {Agrobacterium tumefa	97.73
d2fi1a1	187	Putative hydrolase SP0805 {Streptococcus pneumonia	97.71
d2fpwa1	161	Histidine biosynthesis bifunctional protein HisB,	97.5
d1cr6a1	222	Epoxide hydrolase, N-terminal domain {Mouse (Mus m	97.38
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	97.28
d2b0ca1	197	Putative phosphatase YihX {Escherichia coli [TaxId	97.23
d2o2xa1	209	Hypothetical protein Mll2559 {Mesorhizobium loti [	97.22
d1x42a1	230	Hypothetical protein PH0459 {Archaeon Pyrococcus h	97.22
d1nnla_	217	Phosphoserine phosphatase {Human (Homo sapiens) [T	96.84
d1zd3a1	225	Epoxide hydrolase, N-terminal domain {Human (Homo	96.66
d1swva_	257	Phosphonoacetaldehyde hydrolase {Bacillus cereus [	96.65
d2gfha1	247	N-acylneuraminate-9-phosphatase NANP {Mouse (Mus m	96.62
d2amya1	243	Phosphomannomutase 2 {Human (Homo sapiens) [TaxId:	96.25
d1xpja_	124	Hypothetical protein VC0232 {Vibrio cholerae [TaxI	96.05
d1zs9a1	253	E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}	96.02
d2gmwa1	182	D,D-heptose 1,7-bisphosphate phosphatase GmhB {Esc	95.95
d1xvia_	232	Putative mannosyl-3-phosphoglycerate phosphatase M	95.82
d1yj5a1	195	5' polynucleotide kinase-3' phosphatase, middle do	95.76
d1in1a_	88	DNA ligase III alpha {Human (Homo sapiens) [TaxId:	95.74
d2bdua1	291	Cytosolic 5'-nucleotidase III {Mouse (Mus musculus	95.61
d2c4na1	250	NagD {Escherichia coli [TaxId: 562]}	95.59
d1zrna_	220	L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., s	95.41
d2fuea1	244	Phosphomannomutase 1 {Human (Homo sapiens) [TaxId:	95.25
d1rkqa_	271	Hypothetical protein YidA {Escherichia coli [TaxId	95.06
d1vjra_	261	Hypothetical protein TM1742 {Thermotoga maritima [	95.03
d1kzyc1	153	53BP1 {Human (Homo sapiens) [TaxId: 9606]}	94.93
d1wr8a_	230	Phosphoglycolate phosphatase, PGPase {Pyrococcus h	94.8
d1l6ra_	225	Phosphoglycolate phosphatase, PGPase {Archaeon The	94.73
d1o08a_	221	beta-Phosphoglucomutase {Lactococcus lactis [TaxId	94.7
d1yv9a1	253	Putative hydrolase EF1188 {Enterococcus faecalis [	94.64
d1wvia_	253	Putative phosphatase SMU.1415c {Streptococcus muta	94.56
d1wzca1	243	Putative mannosyl-3-phosphoglycerate phosphatase M	94.47
d1nf2a_	267	Hypothetical protein TM0651 {Thermotoga maritima [	94.09
d1nrwa_	285	Hypothetical protein YwpJ {Bacillus subtilis [TaxI	93.86
d1qq5a_	245	L-2-Haloacid dehalogenase, HAD {Xanthobacter autot	93.7
d1s2oa1	244	Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc	93.69
d1u02a_	229	Trehalose-6-phosphate phosphatase related protein	93.6
d2b30a1	283	PFL1270w orthologue {Plasmodium vivax [TaxId: 5855	92.8
d1j97a_	210	Phosphoserine phosphatase {Archaeon Methanococcus	92.49
d1rlma_	269	Sugar phosphatase SupH (YbiV) {Escherichia coli [T	92.17
d2b82a1	209	Class B acid phosphatase, AphA {Escherichia coli [	89.1
d1l7ba_	92	NAD+-dependent DNA ligase, domain 4 {Thermus therm	85.46
d2rbka1	260	Sugar-phosphate phosphatase BT4131 {Bacteroides th	84.47
d2b8ea1	135	Cation-transporting ATPase {Archaeon Archaeoglobus	82.77
d1rkua_	206	Homoserine kinase ThrH {Pseudomonas aeruginosa [Ta	82.12
d1te2a_	218	Phosphatase YniC {Escherichia coli [TaxId: 562]}	80.56

>d1ta0a_ c.108.1.16 (A:) Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NLI interacting factor-like phosphatase
domain: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, NRAMP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2e-40  Score=290.91  Aligned_cols=168  Identities=24%  Similarity=0.346  Sum_probs=139.4

Q ss_pred             ccccCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeec-cceEEEEeCccHHHHHHHhhcCceEEEEcCCc
Q 040058           63 EQEERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQM-ANDKLVKLRPFVRTFLEQASSLVDIYLCTMST  141 (326)
Q Consensus        63 ~~~~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~-~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~  141 (326)
                      ++..+|++||||||||||||+..+... ....+.        ..+.. ...+||++|||+++||++++++|||+|||+|+
T Consensus        10 ~~~~~k~~LVLDLDeTLihs~~~~~~~-~~~~~~--------~~~~~~~~~~~v~~RP~l~eFL~~l~~~yei~I~Ta~~   80 (181)
T d1ta0a_          10 AQDSDKICVVIDLDETLVHSSFKPVNN-ADFIIP--------VEIDGVVHQVYVLKRPHVDEFLQRMGELFECVLFTASL   80 (181)
T ss_dssp             GGGTTSCEEEECCBTTTEEEESSCCTT-CSEEEE--------EEETTEEEEEEEEECTTHHHHHHHHHHHSEEEEECSSC
T ss_pred             cccCCCeEEEEeCCCCEEccccCCCCC-ccceee--------ecccceeeeeEEecCCCHHHHHHHHHhceEEEEEcCCc
Confidence            445899999999999999998765321 110000        00111 12789999999999999999999999999999


Q ss_pred             HHHHHHHHHHhCCCCccccceEEeecCCCC---CccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEeCcccccccccc
Q 040058          142 RCYAEAAVKLLDLDSKYFSSRIIAREDFNG---KDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVLGKYVYFRDKEL  218 (326)
Q Consensus       142 ~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I~~y~~f~~~~~  218 (326)
                      ++||++|++.|||++. |..++ .|++|..   .+.|||+++++++++||||||++.+|..|++|+|+|+||.       
T Consensus        81 ~~YA~~il~~ldp~~~-~~~~~-~r~~c~~~~~~~~KdL~~l~~~l~~vvivDd~~~~~~~~~~N~I~I~~f~-------  151 (181)
T d1ta0a_          81 AKYADPVADLLDKWGA-FRARL-FRESCVFHRGNYVKDLSRLGRDLRRVLILDNSPASYVFHPDNAVPVASWF-------  151 (181)
T ss_dssp             HHHHHHHHHHHCSSCC-EEEEE-CGGGSEEETTEEECCGGGSCSCGGGEEEECSCGGGGTTCGGGBCCCCCCS-------
T ss_pred             HHHHHHHHHHhccCCc-eeEEE-EeeeeeecCCcccccHhhcCCCHHHeEEEcCChhhhhcCccCeeEecCcC-------
Confidence            9999999999999976 44445 4898863   5889999999999999999999999999999999999997       


Q ss_pred             CCCCCCccccccCCCccHHHHHHHHHHHHHHHHHhcCCCCCcHHHHHHH
Q 040058          219 NGDHKSYSETLTDESENEEALANVLRVLKTIHRLFFDSVCGDVRTYLPK  267 (326)
Q Consensus       219 ~~~~~s~~e~~~d~~~~D~~L~~l~~~L~~ih~~ff~~~~~DVr~il~~  267 (326)
                                   .+++|++|..|+++|+++++      .+|||++|++
T Consensus       152 -------------~~~~D~eL~~l~~~L~~l~~------~~DVR~~l~~  181 (181)
T d1ta0a_         152 -------------DNMSDTELHDLLPFFEQLSR------VDDVYSVLRQ  181 (181)
T ss_dssp             -------------SCTTCCHHHHHHHHHHHHTT------CSCHHHHHCC
T ss_pred             -------------CCCCcHHHHHHHHHHHHHcc------CCcHHHHhcC
Confidence                         25779999999999999986      4999999863

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.86  E-value=4.2e-10  Score=94.02  Aligned_cols=131  Identities=18%  Similarity=0.092  Sum_probs=84.1

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-HHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-RCYA  145 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-~~YA  145 (326)
                      ++.+||||||||+++.......++-   ....    ...........+++.||+.++|+.+.+. +.+.|.|++. ..++
T Consensus         5 pK~viFDlDGTL~d~~~~~~~~~~~---~~~~----~~~~~d~~~~~~~l~pgv~e~L~~L~~~G~~~~v~S~~~~~~~~   77 (164)
T d1u7pa_           5 PKLAVFDLDYTLWPFWVDTHVDPPF---HKSS----DGTVRDRRGQNIQLYPEVPEVLGRLQSLGVPVAAASRTSEIQGA   77 (164)
T ss_dssp             CSEEEECCBTTTBSSCTTTTCCSCE---EECT----TSCEEETTCCEECCCTTHHHHHHHHHHTTCCEEEEECCSCHHHH
T ss_pred             CCEEEEcCCCcccCCccccccCccH---hHHh----cchHhhhhccccccchHHHHHHHHHHHCCCcEEEEeccccchhh
Confidence            3568999999999876554322110   0000    0111111134578999999999999877 9999999765 5788


Q ss_pred             HHHHHHhCCCCccccceEEeecCC-CCCccccCCCCCCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          146 EAAVKLLDLDSKYFSSRIIAREDF-NGKDRKNPDLVRGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       146 ~~v~~~LDP~~~~F~~Ri~sRd~~-~~~~~KdL~~l~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      ..+++.+... .+|.. +.+.... ...+.+-++.++.+++.+|+|||++.-.......++..
T Consensus        78 ~~~l~~~~~~-~~~~~-~~~~~kp~~~~~~~~~~~~~~~~~~~l~igD~~~di~aA~~aG~~~  138 (164)
T d1u7pa_          78 NQLLELFDLG-KYFIQ-REIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNIIDVGRLGVTC  138 (164)
T ss_dssp             HHHHHHTTCG-GGCSE-EEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHHHHHHHTTTCEE
T ss_pred             ccchhccccc-cccee-eecccCCChHHHHHHHHHhCCChHHEEEEcCCHHHHHHHHHcCCEE
Confidence            8899998887 56664 3321111 11244455667889999999999986554333444433

>d1t15a2 c.15.1.3 (A:1758-1859) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.4e-08  Score=77.44  Aligned_cols=56  Identities=14%  Similarity=0.076  Sum_probs=46.4

Q ss_pred             ccC-CCcEEEEcCccch----HHHHHHHH------------------------------------HHhhhCCceEEchHH
Q 040058          270 SEF-SRDVLYFSAIFRD----CLWAEQEE------------------------------------KFLVQEKKFLVHPRW  308 (326)
Q Consensus       270 ~~v-~g~~ivfs~~~p~----~~~~~aea------------------------------------~~a~~~~~~vV~p~W  308 (326)
                      +++ +|+.|+|||.|+.    .|.++.++                                    +.|+..|++||+|.|
T Consensus         1 kkiF~g~~i~~~g~~~~~~~~~L~~li~~~GG~v~~~~~~~~~~~~~t~~~i~~~~~~~~~~~~~~~~~~~~i~iV~~~W   80 (102)
T d1t15a2           1 RKIFRGLEICCYGPFTNMPTDQLEWMVQLCGASVVKELSSFTLGTGVHPIVVVQPDAWTEDNGFHAIGQMCEAPVVTREW   80 (102)
T ss_dssp             SCTTTTCEEEECSCCSSSCHHHHHHHHHHTTCEECCSGGGCCCSTTCCEEEEECGGGCSSCGGGGSSTTTCSSCEEEHHH
T ss_pred             CCCCCCcEEEEeCCCCCcCHHHHHHHHHHhCCEEeeccccccccccccchheecccccchhhHHHHHHHhCCCcEEeeHH
Confidence            467 9999999997764    78888760                                    124456899999999


Q ss_pred             HHHHHHHhcCCCCCCCC
Q 040058          309 IDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       309 l~~~~~~w~r~~E~~f~  325 (326)
                      |.+|+..|++.||++|.
T Consensus        81 l~dsi~~~~~lp~~~Yl   97 (102)
T d1t15a2          81 VLDSVALYQCQELDTYL   97 (102)
T ss_dssp             HHHHHHHTSCCCSGGGB
T ss_pred             HHHHHHhCCcCCchhcc
Confidence            99999999999999996

>d2hdoa1 c.108.1.6 (A:1-207) Phosphoglycolate phosphatase {Lactobacillus plantarum [TaxId: 1590]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase
species: Lactobacillus plantarum [TaxId: 1590]

Probab=98.29  E-value=1.2e-07  Score=80.38  Aligned_cols=81  Identities=16%  Similarity=0.155  Sum_probs=66.6

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+++.+.+.|.|++.+..+..+++.++.. .+|.. +++.++....      +.+-+++++.+++.++
T Consensus        81 ~~~~~g~~~~L~~l~~~~~~~ivT~~~~~~~~~~l~~~~l~-~~f~~-i~~~~~~~~~KP~p~~~~~~~~~~~~~~~~~l  158 (207)
T d2hdoa1          81 IELYPGITSLFEQLPSELRLGIVTSQRRNELESGMRSYPFM-MRMAV-TISADDTPKRKPDPLPLLTALEKVNVAPQNAL  158 (207)
T ss_dssp             CEECTTHHHHHHHSCTTSEEEEECSSCHHHHHHHHTTSGGG-GGEEE-EECGGGSSCCTTSSHHHHHHHHHTTCCGGGEE
T ss_pred             cccccchhhhhhhhccccccccccccccccccccccccccc-ccccc-cccccccccchhhhhhhcccccceeeecccee
Confidence            57889999999999988999999999999999999998876 57864 7777766531      3455666788899999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      +|+|++.-.
T Consensus       159 ~VgDs~~Di  167 (207)
T d2hdoa1         159 FIGDSVSDE  167 (207)
T ss_dssp             EEESSHHHH
T ss_pred             EecCCHHHH
Confidence            999997533

>d1ltqa1 c.108.1.9 (A:153-301) Polynucleotide kinase, phosphatase domain {Bacteriophage T4 [TaxId: 10665]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: Polynucleotide kinase, phosphatase domain
species: Bacteriophage T4 [TaxId: 10665]

Probab=98.28  E-value=4.7e-08  Score=78.97  Aligned_cols=122  Identities=12%  Similarity=0.035  Sum_probs=71.7

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHH
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCY  144 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~Y  144 (326)
                      .+++++|+||||||+++...... .|...     .             .....||+.++|+.+.+. |+|++.|+-...|
T Consensus         5 ~kpk~vifDiDgTL~~~~~~~~~-~~~~~-----~-------------~~~~~p~v~~~l~~l~~~G~~Iii~T~R~~~~   65 (149)
T d1ltqa1           5 GKPKAVIFDVDGTLAKMNGRGPY-DLEKC-----D-------------TDVINPMVVELSKMYALMGYQIVVVSGRESGT   65 (149)
T ss_dssp             TSCEEEEEETBTTTBCCSSCCTT-CGGGG-----G-------------GCCBCHHHHHHHHHHHHTTCEEEEEECSCCCC
T ss_pred             CCCcEEEEEcCCCcEeCCCCCcC-Ccccc-----c-------------cCccCHHHHHHHHHHHhccCeEEEEecCcHHH
Confidence            46789999999999988754321 11110     0             024789999999999875 9999999987666


Q ss_pred             HHHHHHHhCC--------CCccccceEEeecCCCCCc---c--ccCCCCCCCCCc-EEEEeCCchhhccCCCCeEEe
Q 040058          145 AEAAVKLLDL--------DSKYFSSRIIAREDFNGKD---R--KNPDLVRGQERG-IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       145 A~~v~~~LDP--------~~~~F~~Ri~sRd~~~~~~---~--KdL~~l~~~~~~-vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      ++...+.|..        .+..+. .++.+.......   .  .-|..+..+... ++++||++..-.....++|++
T Consensus        66 ~~~t~~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~d~~~k~~~l~~~~~~~~~i~~~igD~~~dv~a~~~~Gi~~  141 (149)
T d1ltqa1          66 KEDPTKYYRMTRKWVEDIAGVPLV-MQCQREQGDTRKDDVVKEEIFWKHIAPHFDVKLAIDDRTQVVEMWRRIGVEC  141 (149)
T ss_dssp             SSSTTHHHHHHHHHHHHTTCCCCS-EEEECCTTCCSCHHHHHHHHHHHHTTTTCEEEEEEECCHHHHHHHHHTTCCE
T ss_pred             HHHHHHHHHHHhhhhhhcCCCcEE-EeecccccccCCchHHHHHHHHHhccCCCceEEEEcCCHHHHHHHHHCCCcE
Confidence            5554444432        222222 344455443210   0  012223334444 456799997655444555543

>d2go7a1 c.108.1.6 (A:3-206) Hypothetical protein SP2064 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein SP2064
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.27  E-value=1.9e-07  Score=78.68  Aligned_cols=81  Identities=19%  Similarity=0.132  Sum_probs=63.3

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      .+.+.||+.++|+.+.+. +.+.|.|++.+ ++..+++.++-. .+|. .+++.++...      .+..-++.++.+++.
T Consensus        80 ~~~~~pgv~~~L~~L~~~g~~~~v~Sn~~~-~~~~~l~~~gl~-~~f~-~i~~s~~~~~~Kp~~~~~~~~~~~~~~~p~~  156 (204)
T d2go7a1          80 QVVLMPGAREVLAWADESGIQQFIYTHKGN-NAFTILKDLGVE-SYFT-EILTSQSGFVRKPSPEAATYLLDKYQLNSDN  156 (204)
T ss_dssp             GCEECTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHHTCG-GGEE-EEECGGGCCCCTTSSHHHHHHHHHHTCCGGG
T ss_pred             cCcccchHHhhhhcccccccchhhhcccch-hhhhhhhhcccc-cccc-cccccccccccchhHHHHHHHHHHhCCCCce
Confidence            357889999999999877 99999999875 678899999887 6887 4776665543      133445667788999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +++|+|++.-.
T Consensus       157 ~l~VgD~~~Di  167 (204)
T d2go7a1         157 TYYIGDRTLDV  167 (204)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEEeCCHHHH
Confidence            99999997544

>d1wf6a_ c.15.1.5 (A:) DNA topoisomerase II binding protein 1, TopBP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA topoisomerase II binding protein 1, TopBP1
domain: DNA topoisomerase II binding protein 1, TopBP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=4.5e-07  Score=73.13  Aligned_cols=58  Identities=10%  Similarity=0.161  Sum_probs=46.0

Q ss_pred             hccC-CCcEEEEcCccch---HHHHHHH--------------------------HH--HhhhCCceEEchHHHHHHHHHh
Q 040058          269 RSEF-SRDVLYFSAIFRD---CLWAEQE--------------------------EK--FLVQEKKFLVHPRWIDAYYFLW  316 (326)
Q Consensus       269 r~~v-~g~~ivfs~~~p~---~~~~~ae--------------------------a~--~a~~~~~~vV~p~Wl~~~~~~w  316 (326)
                      ...+ +||+|+|||+-..   .|.++.+                          .+  .|...+++||+|.||++|+..+
T Consensus        37 ~~~~f~G~~i~isGf~~~~~~~l~~~i~~~GG~~~~~~~~~vTHvIv~~~~~~~~~~~~~~~~~i~iV~~~Wl~~c~~~~  116 (132)
T d1wf6a_          37 PEDLLDGCRIYLCGFSGRKLDKLRRLINSGGGVRFNQLNEDVTHVIVGDYDDELKQFWNKSAHRPHVVGAKWLLECFSKG  116 (132)
T ss_dssp             CTTTTTTCEEEEESCCSHHHHHHHHHHHHTTCEEESSCCSSCCEEEESSCCSHHHHHHHHSCCCCCEEEHHHHHHHHHHS
T ss_pred             chhhhCCeEEEEeeCCCHHHHHHHHHHHHcCCEEecccCCCceEEEecCCCccHHHHHHHhcCCCCcCCHHHHHHHHHcC
Confidence            4467 9999999996443   6666665                          12  2445679999999999999999


Q ss_pred             cCCCCCCCCC
Q 040058          317 RRRPEDDYLP  326 (326)
Q Consensus       317 ~r~~E~~f~~  326 (326)
                      ++.||+.|.+
T Consensus       117 ~~l~~~~Y~~  126 (132)
T d1wf6a_         117 YMLSEEPYIH  126 (132)
T ss_dssp             SCCCSGGGBC
T ss_pred             CcCCHHhCcC
Confidence            9999999974

>d2ah5a1 c.108.1.6 (A:1-210) predicted phosphatase SP0104 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: predicted phosphatase SP0104
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=98.26  E-value=2.7e-07  Score=77.78  Aligned_cols=83  Identities=19%  Similarity=0.209  Sum_probs=67.4

Q ss_pred             EEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC----ccccCCCCCCCCCcEE
Q 040058          113 KLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK----DRKNPDLVRGQERGIV  188 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~----~~KdL~~l~~~~~~vv  188 (326)
                      ....+.||+.++|+.+++.+.+.|.|++.+.+++.+++.++-. .+|.. +++.++....    +.+-+++++.+++.+|
T Consensus        81 ~~~~~~~~~~~~l~~l~~~~~~~i~t~~~~~~~~~~l~~~gl~-~~fd~-v~~~~~~~~~~p~~~~~~~~~~~~~~~~~v  158 (210)
T d2ah5a1          81 YEAQLFPQIIDLLEELSSSYPLYITTTKDTSTAQDMAKNLEIH-HFFDG-IYGSSPEAPHKADVIHQALQTHQLAPEQAI  158 (210)
T ss_dssp             GSCEECTTHHHHHHHHHTTSCEEEEEEEEHHHHHHHHHHTTCG-GGCSE-EEEECSSCCSHHHHHHHHHHHTTCCGGGEE
T ss_pred             hcccchhHHHHHHhhhhcccchhhcccccchhhhHHHHhhccc-ccccc-cccccccccccccccchhhhhhhcccccce
Confidence            3568899999999999999999999999999999999999988 67874 6656655432    3344566788899999


Q ss_pred             EEeCCchhh
Q 040058          189 ILDDTESVW  197 (326)
Q Consensus       189 IvDD~~~vw  197 (326)
                      +|+|+..-.
T Consensus       159 ~VGDs~~Di  167 (210)
T d2ah5a1         159 IIGDTKFDM  167 (210)
T ss_dssp             EEESSHHHH
T ss_pred             eecCCHHHH
Confidence            999997544

>d2hsza1 c.108.1.6 (A:1-224) Phosphoglycolate phosphatase Gph {Haemophilus somnus [TaxId: 731]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphoglycolate phosphatase Gph
species: Haemophilus somnus [TaxId: 731]

Probab=98.21  E-value=2.1e-07  Score=78.69  Aligned_cols=84  Identities=13%  Similarity=0.117  Sum_probs=67.1

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQER  185 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~  185 (326)
                      ...++.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++.. .+|.. +++.++....      +..-+++++.+.+
T Consensus        92 ~~~~l~~~~~~~L~~L~~~g~~~~i~tn~~~~~~~~~l~~~gl~-~~f~~-~~~~~~~~~~kp~p~~~~~~~~~~~~~~~  169 (224)
T d2hsza1          92 NISRLYPNVKETLEALKAQGYILAVVTNKPTKHVQPILTAFGID-HLFSE-MLGGQSLPEIKPHPAPFYYLCGKFGLYPK  169 (224)
T ss_dssp             SSCEECTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHTTCG-GGCSE-EECTTTSSSCTTSSHHHHHHHHHHTCCGG
T ss_pred             cccchHHHHHHHHHHHhccCCcccccccccHHHHHHHHHhcCch-hhccc-cccccccccccccchhhHHHHHHhhhhhh
Confidence            3567899999999999876 999999999999999999999987 68975 6655554431      3334555678899


Q ss_pred             cEEEEeCCchhhc
Q 040058          186 GIVILDDTESVWS  198 (326)
Q Consensus       186 ~vvIvDD~~~vw~  198 (326)
                      .+++|+|++.-..
T Consensus       170 ~~~~igD~~~Di~  182 (224)
T d2hsza1         170 QILFVGDSQNDIF  182 (224)
T ss_dssp             GEEEEESSHHHHH
T ss_pred             ccchhcCcHHHHH
Confidence            9999999986554

>d1t15a1 c.15.1.3 (A:1649-1757) Breast cancer associated protein, BRCA1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: BRCT domain
domain: Breast cancer associated protein, BRCA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=2.3e-06  Score=66.66  Aligned_cols=32  Identities=16%  Similarity=0.189  Sum_probs=29.2

Q ss_pred             HhhhCCceEEchHHHHHHHHHhcCCCCCCCCC
Q 040058          295 FLVQEKKFLVHPRWIDAYYFLWRRRPEDDYLP  326 (326)
Q Consensus       295 ~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~~  326 (326)
                      .|...|++||+|+||.+|+..+++.||+.|.+
T Consensus        57 ~a~~~g~~IV~~~Wl~~c~~~~~~l~e~~y~v   88 (109)
T d1t15a1          57 LGIAGGKWVVSYFWVTQSIKERKMLNEHDFEV   88 (109)
T ss_dssp             HHHHTTCEEEETHHHHHHHHTTSCCCGGGGBC
T ss_pred             HHHHCCCccccHHHHHHHHHhCCcCCchheEE
Confidence            46778999999999999999999999999963

>d2hcfa1 c.108.1.6 (A:2-229) Hypothetical protein CT1708 {Chlorobium tepidum [TaxId: 1097]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein CT1708
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.01  E-value=1.8e-06  Score=73.69  Aligned_cols=89  Identities=25%  Similarity=0.151  Sum_probs=64.3

Q ss_pred             EEeCccHHHHHHHhhcC--ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------c---cccCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL--VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------D---RKNPDLVRGQ  183 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~--yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~---~KdL~~l~~~  183 (326)
                      +.+-||+.++|+.+++.  +.+.|.|++.+..+..+++.++.. .+|.. +++.++....      .   .+.+...+.+
T Consensus        90 ~~~~~g~~~~L~~L~~~g~~~~~v~t~~~~~~~~~~l~~~gl~-~~fd~-i~~~~~~~~~k~~p~~~~~~~~~~~~~~~~  167 (228)
T d2hcfa1          90 ITLLEGVRELLDALSSRSDVLLGLLTGNFEASGRHKLKLPGID-HYFPF-GAFADDALDRNELPHIALERARRMTGANYS  167 (228)
T ss_dssp             EEECTTHHHHHHHHHTCTTEEEEEECSSCHHHHHHHHHTTTCS-TTCSC-EECTTTCSSGGGHHHHHHHHHHHHHCCCCC
T ss_pred             ceecCchHHHHhhhhccccccccccCCCcchhhhhhhhhhccc-ccccc-cccccccccccchhHHHHHHhhhhcccCCC
Confidence            56789999999999864  789999999999999999999998 57874 6666665431      1   1112223567


Q ss_pred             CCcEEEEeCCchhhccCCCCeE
Q 040058          184 ERGIVILDDTESVWSDHTENLI  205 (326)
Q Consensus       184 ~~~vvIvDD~~~vw~~~~~N~I  205 (326)
                      ++.+|.|+|++.-.......++
T Consensus       168 p~~~l~VGD~~~Di~aA~~aG~  189 (228)
T d2hcfa1         168 PSQIVIIGDTEHDIRCARELDA  189 (228)
T ss_dssp             GGGEEEEESSHHHHHHHHTTTC
T ss_pred             hhHheeecCChHHHHHHHHcCC
Confidence            8899999999853332234443

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=97.94  E-value=1.1e-06  Score=74.91  Aligned_cols=82  Identities=10%  Similarity=0.138  Sum_probs=57.1

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC---------Cc--------cc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG---------KD--------RK  175 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~---------~~--------~K  175 (326)
                      -++++||+.++|+.+.+. +.++|.|++.+.+++.+++.+.+...++.+.+...++...         ..        .+
T Consensus        73 ~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~~i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~  152 (226)
T d2feaa1          73 DAKIREGFREFVAFINEHEIPFYVISGGMDFFVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSCKGTCSNQCGCCKPS  152 (226)
T ss_dssp             HCCBCTTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCCCTTCCSCCSSCHHH
T ss_pred             ccchhHHHHHHHHHHHhcccccccCCcchhhhHHHHHHHcCCccceeeeeEEEeCCcceeccccccccccccCCHHHHHH
Confidence            357999999999999655 9999999999999999999888764333333332221110         00        01


Q ss_pred             cCCCCCCCCCcEEEEeCCch
Q 040058          176 NPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       176 dL~~l~~~~~~vvIvDD~~~  195 (326)
                      -++.++.+.+.++.|-|+..
T Consensus       153 ~~~~~~~~~~~~i~iGDs~~  172 (226)
T d2feaa1         153 VIHELSEPNQYIIMIGDSVT  172 (226)
T ss_dssp             HHHHHCCTTCEEEEEECCGG
T ss_pred             HHHHhcCCCceEEEEeCchh
Confidence            12334567789999999974

>d1cdza_ c.15.1.1 (A:) DNA-repair protein XRCC1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA-repair protein XRCC1
domain: DNA-repair protein XRCC1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=9.1e-06  Score=60.95  Aligned_cols=56  Identities=18%  Similarity=0.164  Sum_probs=41.7

Q ss_pred             cC-CCcEEEEcCccch----HHHHHHH--------------------------HHHh--hhCCceEEchHHHHHHHHHhc
Q 040058          271 EF-SRDVLYFSAIFRD----CLWAEQE--------------------------EKFL--VQEKKFLVHPRWIDAYYFLWR  317 (326)
Q Consensus       271 ~v-~g~~ivfs~~~p~----~~~~~ae--------------------------a~~a--~~~~~~vV~p~Wl~~~~~~w~  317 (326)
                      .+ +|++++++|-+|.    .+.++.+                          .+.+  ...++.||+|.||.+|+..++
T Consensus         4 d~F~g~~f~v~g~~~~~~~~~l~~~i~~~GG~v~~~~~~~~THvI~~~~~~~~~~~~~~~~~~i~iV~~~Wl~dc~~~~~   83 (96)
T d1cdza_           4 DFFQGKHFFLYGEFPGDERRKLIRYVTAFNGELEDYMSDRVQFVITAQEWDPSFEEALMDNPSLAFVRPRWIYSCNEKQK   83 (96)
T ss_dssp             CTTTTCEEEECSCCCTHHHHHHHHHHHHTTCEECSSCSTTCSEEECSSCCCHHHHHHHTTCTTCEEECTHHHHHHHTTTS
T ss_pred             cccCCcEEEEeCCCCHHHHHHHHHHHHHhCCEEeccCCCCceEEEEccCCcceeeehhhhCCCCeEEEEhHHHHHHHcCC
Confidence            35 7888888887775    3444433                          1223  235789999999999999999


Q ss_pred             CCCCCCCCC
Q 040058          318 RRPEDDYLP  326 (326)
Q Consensus       318 r~~E~~f~~  326 (326)
                      ..||+.|.+
T Consensus        84 ~lp~~~Y~i   92 (96)
T d1cdza_          84 LLPHQLYGV   92 (96)
T ss_dssp             CCCGGGGBC
T ss_pred             cCCchhcEe
Confidence            999999863

>d2obba1 c.108.1.25 (A:1-122) Hypothetical protein BT0820 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: BT0820-like
domain: Hypothetical protein BT0820
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=97.79  E-value=3.4e-05  Score=61.34  Aligned_cols=96  Identities=11%  Similarity=0.148  Sum_probs=66.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      +++++|+||||.+.. .+.                          +-+..|++-++|+++.+. +.|+|+|+-...+-+.
T Consensus         1 mti~vDiDGTl~~~~-~~~--------------------------~~kPi~~~Ie~l~~L~~~G~~IIi~TaR~~~~~~~   53 (122)
T d2obba1           1 MTIAVDFDGTIVEHR-YPR--------------------------IGEEIPFAVETLKLLQQEKHRLILWSVREGELLDE   53 (122)
T ss_dssp             CEEEECCBTTTBCSC-TTS--------------------------CCCBCTTHHHHHHHHHHTTCEEEECCSCCHHHHHH
T ss_pred             CEEEEEcCCCcCCCC-CCc--------------------------cccccHHHHHHHHHHHHCCCeEEEEecCCCcchHH
Confidence            589999999997532 111                          014679999999999755 9999999999999999


Q ss_pred             HHHHhCCCCccccceEEeecCCCCCccccCCCCCCCCCcEEEEeCCch
Q 040058          148 AVKLLDLDSKYFSSRIIAREDFNGKDRKNPDLVRGQERGIVILDDTES  195 (326)
Q Consensus       148 v~~~LDP~~~~F~~Ri~sRd~~~~~~~KdL~~l~~~~~~vvIvDD~~~  195 (326)
                      ..+.|.-+|--|. .+-   .......+.-....+.+.--++|||+.-
T Consensus        54 t~~wL~~~~i~yd-~i~---~~~~~~~~~~~~~~~Kp~ad~yIDDKai   97 (122)
T d2obba1          54 AIEWCRARGLEFY-AAN---KDYPEEERDHQGFSRKLKADLFIDDRNV   97 (122)
T ss_dssp             HHHHHHTTTCCCS-EES---SSSTTC---CCSCCSSCCCSEEECTTST
T ss_pred             HHHHHHHcCCCce-ehh---ccCccCccccceecCCccccEEEeCCcc
Confidence            9999998876564 232   1111123333334455666789999864

>d2fdra1 c.108.1.6 (A:3-224) Hypothetical protein Atu0790 {Agrobacterium tumefaciens [TaxId: 358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Hypothetical protein Atu0790
species: Agrobacterium tumefaciens [TaxId: 358]

Probab=97.73  E-value=4.8e-06  Score=70.42  Aligned_cols=90  Identities=14%  Similarity=0.166  Sum_probs=68.3

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC--------CccccCCCCCCCCC
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG--------KDRKNPDLVRGQER  185 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~--------~~~KdL~~l~~~~~  185 (326)
                      .+.+.||+.++|+++..  ...|.|++.+.++..+++.++.. .+|...+++.++...        .+.+-+++++.+++
T Consensus        83 ~~~~~~g~~~~L~~l~~--~~~i~t~~~~~~~~~~l~~~~l~-~~f~~~~~~~~~~~~~~~KP~~~~~~~~~~~l~~~p~  159 (222)
T d2fdra1          83 DVKIIDGVKFALSRLTT--PRCICSNSSSHRLDMMLTKVGLK-PYFAPHIYSAKDLGADRVKPKPDIFLHGAAQFGVSPD  159 (222)
T ss_dssp             HCCBCTTHHHHHHHCCS--CEEEEESSCHHHHHHHHHHTTCG-GGTTTCEEEHHHHCTTCCTTSSHHHHHHHHHHTCCGG
T ss_pred             ccchhhhHHHHhhhccc--cceeeeecchhhhhhhhcccccc-cccceeecccccccccccccCHHHHHHHHHhhCCCCc
Confidence            46789999999999975  55799999999999999999998 688877776553221        14455666788999


Q ss_pred             cEEEEeCCchhhccCCCCeEE
Q 040058          186 GIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       186 ~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      .+|+|+|++.--......++.
T Consensus       160 ~~l~vgDs~~dv~aA~~aG~~  180 (222)
T d2fdra1         160 RVVVVEDSVHGIHGARAAGMR  180 (222)
T ss_dssp             GEEEEESSHHHHHHHHHTTCE
T ss_pred             eEEEEcCCHHHHHHHHHcCCE
Confidence            999999998544333344444

>d2fi1a1 c.108.1.3 (A:4-190) Putative hydrolase SP0805 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Putative hydrolase SP0805
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=97.71  E-value=2.4e-06  Score=71.25  Aligned_cols=89  Identities=10%  Similarity=0.009  Sum_probs=61.7

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCCC------ccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNGK------DRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~~------~~KdL~~l~~~~~~  186 (326)
                      ...+.||+.++|+.+++. +.+.|.|++.+ ++..+++.++.. .+|.. +++.++....      +..-++.++  .+.
T Consensus        77 ~~~~~~gv~~~l~~l~~~g~~~~i~Sn~~~-~~~~~l~~~~l~-~~fd~-i~~~~~~~~~KP~p~~~~~~~~~~~--~~~  151 (187)
T d2fi1a1          77 HPILFEGVSDLLEDISNQGGRHFLVSHRND-QVLEILEKTSIA-AYFTE-VVTSSSGFKRKPNPESMLYLREKYQ--ISS  151 (187)
T ss_dssp             SCCBCTTHHHHHHHHHHTTCEEEEECSSCT-HHHHHHHHTTCG-GGEEE-EECGGGCCCCTTSCHHHHHHHHHTT--CSS
T ss_pred             cCcccchhHHHHHHHHhhhccccccccCcc-chhhhhhhhccc-ccccc-ccccccccccCCCHHHHHHHHHHcC--CCC
Confidence            346789999999999877 99999998876 556688999887 68985 7766654321      222233444  345


Q ss_pred             EEEEeCCchhhccCCCCeEEe
Q 040058          187 IVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       187 vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      +|+|+|++.-.......|+..
T Consensus       152 ~l~vgDs~~Di~aA~~aG~~~  172 (187)
T d2fi1a1         152 GLVIGDRPIDIEAGQAAGLDT  172 (187)
T ss_dssp             EEEEESSHHHHHHHHHTTCEE
T ss_pred             eEEEeCCHHHHHHHHHcCCEE
Confidence            999999986544334455553

>d2fpwa1 c.108.1.19 (A:3-163) Histidine biosynthesis bifunctional protein HisB, phosphatase domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Histidine biosynthesis bifunctional protein HisB, phosphatase domain
species: Escherichia coli [TaxId: 562]

Probab=97.50  E-value=0.00013  Score=60.17  Aligned_cols=106  Identities=9%  Similarity=0.098  Sum_probs=62.6

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc-----
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST-----  141 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~-----  141 (326)
                      |+.++||.||||+.......      +. ...+             .+++-||+.+.|+.+.+. |.++|.|+.+     
T Consensus         2 ~K~i~~D~DGtL~~~~~~~~------~~-~~~~-------------~~~~~pgv~e~L~~L~~~g~~l~i~TNq~~ia~~   61 (161)
T d2fpwa1           2 QKYLFIDRDGTLISEPPSDF------QV-DRFD-------------KLAFEPGVIPQLLKLQKAGYKLVMITNQDGLGTQ   61 (161)
T ss_dssp             CEEEEECCBTTTBCCC--CC------CC-CSGG-------------GCCBCTTHHHHHHHHHHTTEEEEEEEECTTTTST
T ss_pred             CcEEEEeCCCCeEeeCCCCC------cc-CCHH-------------HceECccHHHHHHHHHHcCCceeeecccccchhH
Confidence            67889999999997432110      10 0000             136889999999999876 9999999864     


Q ss_pred             ---HHHH----HHHHHHhCCCCccccceEE-----eecCCCC------CccccCCCCCCCCCcEEEEeCCc
Q 040058          142 ---RCYA----EAAVKLLDLDSKYFSSRII-----AREDFNG------KDRKNPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       142 ---~~YA----~~v~~~LDP~~~~F~~Ri~-----sRd~~~~------~~~KdL~~l~~~~~~vvIvDD~~  194 (326)
                         +.-.    ..+.+.+...|..+. .++     +.++|..      +...-++.++-+++.+++|-|+.
T Consensus        62 ~~~~~~~~~~~~~l~~~l~~~~~~~~-~i~~~~~~~~~~~~~~KP~p~~~~~~~~~~~id~~~~~~IGD~~  131 (161)
T d2fpwa1          62 SFPQADFDGPHNLMMQIFTSQGVQFD-EVLICPHLPADECDCRKPKVKLVERYLAEQAMDRANSYVIGDRA  131 (161)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHTTCCEE-EEEEECCCGGGCCSSSTTSSGGGGGGC----CCGGGCEEEESSH
T ss_pred             HHHHHHhhhhhhhhhhhccccccccc-eeeeccccccccccccccccHHHHHHHHhcCCChhcEEEECCCH
Confidence               1111    123344444443332 222     2233332      34555666778999999999997

>d1cr6a1 c.108.1.2 (A:4-225) Epoxide hydrolase, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.38  E-value=2.1e-05  Score=65.94  Aligned_cols=81  Identities=14%  Similarity=0.037  Sum_probs=57.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCC----cHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMS----TRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQ  183 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g----~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~  183 (326)
                      ++.+|++.++|+.+.+. +.+.|.|++    ...+...+....+.. .||.. +++-++...      .+.+-++.++.+
T Consensus        96 ~~~~~~~~~~L~~L~~~~~~~~i~s~~~~~~~~~~~~~~~~~~~l~-~~fd~-i~~s~~~~~~KP~p~~~~~~~~~~~v~  173 (222)
T d1cr6a1          96 RSINRPMLQAAIALKKKGFTTCIVTNNWLDDGDKRDSLAQMMCELS-QHFDF-LIESCQVGMIKPEPQIYNFLLDTLKAK  173 (222)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSSSHHHHHHHHHHHG-GGCSE-EEEHHHHSCCTTCHHHHHHHHHHHTSC
T ss_pred             CCCCccHHHHHHHHHhcCCceEEeeccccccHHHHHHHHHHhcChH-hhhce-eeehhhccCCCCChHHHHHHHHHhCCC
Confidence            47899999999999876 899999974    344555555555555 57874 555554432      245556667788


Q ss_pred             CCcEEEEeCCchhh
Q 040058          184 ERGIVILDDTESVW  197 (326)
Q Consensus       184 ~~~vvIvDD~~~vw  197 (326)
                      ++.+|+|||+..-.
T Consensus       174 p~~~l~IgD~~~Di  187 (222)
T d1cr6a1         174 PNEVVFLDDFGSNL  187 (222)
T ss_dssp             TTSEEEEESSSTTT
T ss_pred             cceEEEEECCHHHH
Confidence            89999999996433

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=97.28  E-value=0.00012  Score=61.32  Aligned_cols=81  Identities=17%  Similarity=0.123  Sum_probs=66.6

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      ...||+.++|+.+.+. |.+.|.|++.+.+++.+++.++-. .+|.. +++.++...      .+.+-+++++.+++.++
T Consensus        88 ~~~pg~~~~l~~L~~~g~~~~i~T~~~~~~~~~~l~~~~l~-~~F~~-i~~~~~~~~~Kp~~~~~~~~~~~l~~~~~~~l  165 (218)
T d1te2a_          88 PLLPGVREAVALCKEQGLLVGLASASPLHMLEKVLTMFDLR-DSFDA-LASAEKLPYSKPHPQVYLDCAAKLGVDPLTCV  165 (218)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSE-EEECTTSSCCTTSTHHHHHHHHHHTSCGGGEE
T ss_pred             cccchHHHHHHHhhhcccccccccccccccccccccccccc-ccccc-cccccccccchhhHHHHHHHHHHcCCCchhcE
Confidence            4679999999999866 999999999999999999999887 68975 777766543      14555667788899999


Q ss_pred             EEeCCchhhc
Q 040058          189 ILDDTESVWS  198 (326)
Q Consensus       189 IvDD~~~vw~  198 (326)
                      +|+|++.-..
T Consensus       166 ~igD~~~di~  175 (218)
T d1te2a_         166 ALEDSVNGMI  175 (218)
T ss_dssp             EEESSHHHHH
T ss_pred             EEeeCHHHHH
Confidence            9999986443

>d2b0ca1 c.108.1.2 (A:8-204) Putative phosphatase YihX {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Putative phosphatase YihX
species: Escherichia coli [TaxId: 562]

Probab=97.23  E-value=1.2e-06  Score=71.37  Aligned_cols=92  Identities=13%  Similarity=0.052  Sum_probs=64.9

Q ss_pred             eEEEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHHHHHHh-CCCCccccceEEeecCCCC------CccccCCCCCCC
Q 040058          112 DKLVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEAAVKLL-DLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQ  183 (326)
Q Consensus       112 ~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~v~~~L-DP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~  183 (326)
                      .....+.|++.+++..+.+ .+.+.|.|++.+..+...+..+ +.. .+|.. +++.++.+.      .+..-++.++.+
T Consensus        80 ~~~~~~~~~~~~l~~~l~~~~~~~~i~t~~~~~~~~~~~~~~~~l~-~~fd~-v~~s~~~~~~Kp~~~~~~~~~~~~~~~  157 (197)
T d2b0ca1          80 AVFVALRPEVIAIMHKLREQGHRVVVLSNTNRLHTTFWPEEYPEIR-DAADH-IYLSQDLGMRKPEARIYQHVLQAEGFS  157 (197)
T ss_dssp             TCEEEECHHHHHHHHHHHHTTCEEEEEECCCCCTTSCCGGGCHHHH-HHCSE-EEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             HhccccCchhHHHHHHHHhcCCeEEEEeCccHHHHHHHHHHcccch-hhccc-eeecccccccccchHHHHHHHHhcCCC
Confidence            6678999999999998864 5999999999988877666544 333 46775 555554332      134456667888


Q ss_pred             CCcEEEEeCCchhhccCCCCeE
Q 040058          184 ERGIVILDDTESVWSDHTENLI  205 (326)
Q Consensus       184 ~~~vvIvDD~~~vw~~~~~N~I  205 (326)
                      ++++|+|+|++.-.......|+
T Consensus       158 ~~~~l~vgDs~~di~~A~~aG~  179 (197)
T d2b0ca1         158 PSDTVFFDDNADNIEGANQLGI  179 (197)
T ss_dssp             GGGEEEEESCHHHHHHHHTTTC
T ss_pred             CCeEEEEeCCHHHHHHHHHcCC
Confidence            9999999999865543333343

>d2o2xa1 c.108.1.19 (A:8-216) Hypothetical protein Mll2559 {Mesorhizobium loti [TaxId: 381]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: Hypothetical protein Mll2559
species: Mesorhizobium loti [TaxId: 381]

Probab=97.22  E-value=6.8e-05  Score=64.59  Aligned_cols=102  Identities=14%  Similarity=0.107  Sum_probs=64.9

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc------
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST------  141 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~------  141 (326)
                      ..|.||+||||++.....         .. .+    +         +++-||+.+.|+.+.+. |.++|.|+.+      
T Consensus        24 ~Aif~DrDGtl~~~~~y~---------~~-~~----~---------~~l~pgv~e~L~~L~~~G~~l~IvTNQ~gi~~g~   80 (209)
T d2o2xa1          24 PALFLDRDGTINVDTDYP---------SD-PA----E---------IVLRPQMLPAIATANRAGIPVVVVTNQSGIARGY   80 (209)
T ss_dssp             CCEEECSBTTTBCCCSCT---------TC-GG----G---------CCBCGGGHHHHHHHHHHTCCEEEEEECHHHHTTS
T ss_pred             CEEEEeCCCCeECCCCCC---------CC-HH----H---------eEecccHHHHHHHHHhhCCeEEEecccccchhhh
Confidence            578899999999854221         11 11    1         25789999999999876 9999999844      


Q ss_pred             ------HHHHHHHHHHhCCCCccccceEEeecC------------CCC------CccccCCCCCCCCCcEEEEeCCc
Q 040058          142 ------RCYAEAAVKLLDLDSKYFSSRIIARED------------FNG------KDRKNPDLVRGQERGIVILDDTE  194 (326)
Q Consensus       142 ------~~YA~~v~~~LDP~~~~F~~Ri~sRd~------------~~~------~~~KdL~~l~~~~~~vvIvDD~~  194 (326)
                            ....+.+.+.+...|..+. .++....            |..      +..+-++.++.+++.+++|-|+.
T Consensus        81 ~~~~~~~~~~~~~~~~l~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~rKP~p~ml~~a~~~~~i~~~~~~~VGD~~  156 (209)
T d2o2xa1          81 FGWSAFAAVNGRVLELLREEGVFVD-MVLACAYHEAGVGPLAIPDHPMRKPNPGMLVEAGKRLALDLQRSLIVGDKL  156 (209)
T ss_dssp             CCHHHHHHHHHHHHHHHHHTTCCCS-EEEEECCCTTCCSTTCCSSCTTSTTSCHHHHHHHHHHTCCGGGCEEEESSH
T ss_pred             hhhhhhhhhhhHHHHHhhhcccccc-eEEEecccccccccccccccccccccchhhhHhHHHhCCCccceEEeCCCH
Confidence                  2334445555655554443 2332221            111      12233445677899999999986

>d1x42a1 c.108.1.1 (A:1-230) Hypothetical protein PH0459 {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: Hypothetical protein PH0459
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=97.22  E-value=7e-05  Score=63.61  Aligned_cols=83  Identities=17%  Similarity=0.086  Sum_probs=66.9

Q ss_pred             EEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          114 LVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      ++.+.||+.++|+.+++.|.++|.|++.+.++..+++.++-. .+|. .+++.++.+.      .+.+-+++++.+++.+
T Consensus        98 ~~~~~p~~~~~L~~l~~~~~i~i~Sn~~~~~~~~~l~~~gl~-~~fd-~i~~s~~~~~~KP~~~~~~~~~~~l~~~p~~~  175 (230)
T d1x42a1          98 YGELYPEVVEVLKSLKGKYHVGMITDSDTEYLMAHLDALGIK-DLFD-SITTSEEAGFFKPHPRIFELALKKAGVKGEEA  175 (230)
T ss_dssp             HCCBCTTHHHHHHHHBTTBEEEEEESSCHHHHHHHHHHHTCG-GGCS-EEEEHHHHTBCTTSHHHHHHHHHHHTCCGGGE
T ss_pred             hCcccccHHHHHHHhhccCceeeeeccccccchhhhcccccc-cccc-cccccccccccchhhHHHHHHHhhhccccccc
Confidence            467889999999999988999999999999999999999887 6787 4766665442      1445566778888999


Q ss_pred             EEEeCCc--hhhc
Q 040058          188 VILDDTE--SVWS  198 (326)
Q Consensus       188 vIvDD~~--~vw~  198 (326)
                      ++|+|++  ++..
T Consensus       176 l~vgD~~~~Di~~  188 (230)
T d1x42a1         176 VYVGDNPVKDCGG  188 (230)
T ss_dssp             EEEESCTTTTHHH
T ss_pred             ceeecCcHhHHHH
Confidence            9999875  4554

>d1nnla_ c.108.1.4 (A:) Phosphoserine phosphatase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.0002  Score=61.05  Aligned_cols=95  Identities=15%  Similarity=0.198  Sum_probs=60.1

Q ss_pred             EEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC-ccccceEEeecCC-------CC----Ccccc--C
Q 040058          113 KLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS-KYFSSRIIAREDF-------NG----KDRKN--P  177 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~-~~F~~Ri~sRd~~-------~~----~~~Kd--L  177 (326)
                      ..++++||+.++++++.+. +.++|-|++.+.+++++++.++-+. .+|.+++--..+.       ..    ...|.  +
T Consensus        79 ~~~~l~pg~~~~i~~lk~~G~~~~ivS~~~~~~v~~i~~~lgi~~~~v~an~~~~~~~G~~~g~~~~~p~~~~~~K~~~v  158 (217)
T d1nnla_          79 QPPHLTPGIRELVSRLQERNVQVFLISGGFRSIVEHVASKLNIPATNVFANRLKFYFNGEYAGFDETQPTAESGGKGKVI  158 (217)
T ss_dssp             SCCCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHTTCCGGGEEEECEEECTTSCEEEECTTSGGGSTTHHHHHH
T ss_pred             hccccCHHHHHHHHHHHhCCCEEEEECCCchHHHHHHHHHhCCcccceeeeeeeeeehhccccceeeeeeeccchHHHHH
Confidence            3467899999999999876 9999999999999999999987652 2444443211110       00    00010  0


Q ss_pred             CCC--CCCCCcEEEEeCCchhhccCCCCeEEe
Q 040058          178 DLV--RGQERGIVILDDTESVWSDHTENLIVL  207 (326)
Q Consensus       178 ~~l--~~~~~~vvIvDD~~~vw~~~~~N~I~I  207 (326)
                      ..+  ..+.+.++.|-|+..=-..-...++.|
T Consensus       159 ~~~~~~~~~~~~~~vGDs~~Di~~~~~ag~~v  190 (217)
T d1nnla_         159 KLLKEKFHFKKIIMIGDGATDMEACPPADAFI  190 (217)
T ss_dssp             HHHHHHHCCSCEEEEESSHHHHTTTTTSSEEE
T ss_pred             HHHHhccCccccEEEEeCHhhHHHHHhCCceE
Confidence            111  135678999999985444334444443

>d1zd3a1 c.108.1.2 (A:2-224) Epoxide hydrolase, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: YihX-like
domain: Epoxide hydrolase, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.66  E-value=0.00012  Score=60.41  Aligned_cols=90  Identities=12%  Similarity=-0.010  Sum_probs=59.4

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHH----HhCCCCccccceEEeecCCCC------CccccCCCCCCC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVK----LLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQ  183 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~----~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~  183 (326)
                      ...+|++.++|..+.+. +.+.|-|++....+...++    ..+-. .+|.. +++.++...      .+.+-++.++.+
T Consensus        98 ~~~~~~~~~~l~~L~~~~~~~~i~Tn~~~~~~~~~~~~~~~~~~~~-~~fd~-i~~s~~~~~~KP~~~~~~~~~~~~~~~  175 (225)
T d1zd3a1          98 RKINRPMLQAALMLRKKGFTTAILTNTWLDDRAERDGLAQLMCELK-MHFDF-LIESCQVGMVKPEPQIYKFLLDTLKAS  175 (225)
T ss_dssp             CEECHHHHHHHHHHHHTTCEEEEEECCCCCCSTTHHHHHHHHHHHH-TTSSE-EEEHHHHTCCTTCHHHHHHHHHHHTCC
T ss_pred             CCCCccHHHHHHHHHhccCccccccccchhhHHHHHHHHhhhcChH-hhccE-EEeccccccchhHHHHHHHHhhhcccC
Confidence            46899999999999765 8999999886654433332    22222 46764 665554432      245556777888


Q ss_pred             CCcEEEEeCCchhhccCCCCeEE
Q 040058          184 ERGIVILDDTESVWSDHTENLIV  206 (326)
Q Consensus       184 ~~~vvIvDD~~~vw~~~~~N~I~  206 (326)
                      ++.+|+|+|++.-.......|++
T Consensus       176 p~e~l~VgD~~~Di~~A~~~G~~  198 (225)
T d1zd3a1         176 PSEVVFLDDIGANLKPARDLGMV  198 (225)
T ss_dssp             GGGEEEEESCHHHHHHHHHTTCE
T ss_pred             ccceeEEecCHHHHHHHHHcCCE
Confidence            89999999997544433344444

>d1swva_ c.108.1.3 (A:) Phosphonoacetaldehyde hydrolase {Bacillus cereus [TaxId: 1396]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphonoacetaldehyde hydrolase-like
domain: Phosphonoacetaldehyde hydrolase
species: Bacillus cereus [TaxId: 1396]

Probab=96.65  E-value=0.00028  Score=60.60  Aligned_cols=82  Identities=17%  Similarity=0.061  Sum_probs=65.8

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCC-CCCc
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRG-QERG  186 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~-~~~~  186 (326)
                      +.+.||+.++|+.+.+. +.+.|.|++.+.+++.+++.++-. .+|.+.+++.++...      .+.+-+.+++. +.+.
T Consensus        98 ~~~~~g~~~~L~~Lk~~g~~i~i~Tn~~~~~~~~~l~~~~l~-~~f~d~~~~~d~~~~~KP~p~~~~~~~~~l~~~p~~~  176 (257)
T d1swva_          98 ASPINGVKEVIASLRERGIKIGSTTGYTREMMDIVAKEAALQ-GYKPDFLVTPDDVPAGRPYPWMCYKNAMELGVYPMNH  176 (257)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEBCSSCHHHHHHHHHHHHHT-TCCCSCCBCGGGSSCCTTSSHHHHHHHHHHTCCSGGG
T ss_pred             CccCCcHHHHHHHHHhcccceeecCCCchhhHHHHHHHHhhc-ccccccccccccccccccChHHHHHHHHHhCCCCcce
Confidence            46899999999999876 999999999999999999998877 456556777777653      24555666776 4588


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +|+|+|+..-.
T Consensus       177 ~v~VgDs~~Di  187 (257)
T d1swva_         177 MIKVGDTVSDM  187 (257)
T ss_dssp             EEEEESSHHHH
T ss_pred             EEEEeCChhhH
Confidence            99999997544

>d2gfha1 c.108.1.6 (A:1-247) N-acylneuraminate-9-phosphatase NANP {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: N-acylneuraminate-9-phosphatase NANP
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.62  E-value=0.00088  Score=56.79  Aligned_cols=78  Identities=21%  Similarity=0.192  Sum_probs=63.8

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      +.+.||+.++|+.+++.|.++|.|++...++..+++..+.. .+|.. +++.++.+.      .+.+-+++++.+++.++
T Consensus       108 ~~~~~~~~~~L~~L~~~~~l~i~Tn~~~~~~~~~l~~~gl~-~~fd~-i~~s~~~~~~KP~p~~~~~~~~~~~~~~~~~l  185 (247)
T d2gfha1         108 MILADDVKAMLTELRKEVRLLLLTNGDRQTQREKIEACACQ-SYFDA-IVIGGEQKEEKPAPSIFYHCCDLLGVQPGDCV  185 (247)
T ss_dssp             CCCCHHHHHHHHHHHTTSEEEEEECSCHHHHHHHHHHHTCG-GGCSE-EEEGGGSSSCTTCHHHHHHHHHHHTCCGGGEE
T ss_pred             CccCccHHHHHHHhhcccceEEeecccchhhhhhhhhcccc-ccccc-cccccccccchhhhhhHHHHHHHhhcCHHhcc
Confidence            45789999999999999999999999999999999998876 68874 666666542      13445566788889999


Q ss_pred             EEeCCc
Q 040058          189 ILDDTE  194 (326)
Q Consensus       189 IvDD~~  194 (326)
                      +|.|+.
T Consensus       186 ~iGD~~  191 (247)
T d2gfha1         186 MVGDTL  191 (247)
T ss_dssp             EEESCT
T ss_pred             eeccCh
Confidence            999986

>d2amya1 c.108.1.10 (A:4-246) Phosphomannomutase 2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.25  E-value=0.0028  Score=52.53  Aligned_cols=52  Identities=17%  Similarity=0.153  Sum_probs=38.1

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      ++..+++||||||+++..                               .+-|...+.|+++.+...++|.|.+....+.
T Consensus         2 ~~kl~~fDlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~g~~~i~Tgr~~~~~~   50 (243)
T d2amya1           2 GPALCLFDVDGTLTAPRQ-------------------------------KITKEMDDFLQKLRQKIKIGVVGGSDFEKVQ   50 (243)
T ss_dssp             CSEEEEEESBTTTBCTTS-------------------------------CCCHHHHHHHHHHTTTSEEEEECSSCHHHHH
T ss_pred             CCEEEEEcCcCCeeCCCC-------------------------------cCCHHHHHHHHHHHcCCCEEEEcCCChHHhH
Confidence            567788899999997641                               2456778889999888777787777655555


Q ss_pred             HHH
Q 040058          147 AAV  149 (326)
Q Consensus       147 ~v~  149 (326)
                      ...
T Consensus        51 ~~~   53 (243)
T d2amya1          51 EQL   53 (243)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            444

>d1xpja_ c.108.1.18 (A:) Hypothetical protein VC0232 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Hypothetical protein VC0232
domain: Hypothetical protein VC0232
species: Vibrio cholerae [TaxId: 666]

Probab=96.05  E-value=0.0022  Score=50.71  Aligned_cols=70  Identities=21%  Similarity=0.190  Sum_probs=51.2

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCc------
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMST------  141 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~------  141 (326)
                      .++++||||||......       .+     .             ..+..|++-++|+.+. +-+.|+|||+-.      
T Consensus         2 K~i~~DiDGTI~~~~~~-------~y-----~-------------~~~P~~~~Ie~l~~l~~~G~~Iii~TaR~~~~~~~   56 (124)
T d1xpja_           2 KKLIVDLDGTLTQANTS-------DY-----R-------------NVLPRLDVIEQLREYHQLGFEIVISTARNMRTYEG   56 (124)
T ss_dssp             CEEEECSTTTTBCCCCS-------CG-----G-------------GCCBCHHHHHHHHHHHHTTCEEEEEECTTTTTTTT
T ss_pred             CEEEEeCCCCeECCCCC-------Cc-----C-------------ccCcCHHHHHHHHHHHHCCCEEEEEecCCccccCC
Confidence            47899999999765321       01     0             1257899999999995 559999999973      


Q ss_pred             ------HHHHHHHHHHhCCCCccccceEE
Q 040058          142 ------RCYAEAAVKLLDLDSKYFSSRII  164 (326)
Q Consensus       142 ------~~YA~~v~~~LDP~~~~F~~Ri~  164 (326)
                            ..+.+...+.|.-.|--| ++++
T Consensus        57 ~~~~~~~~~~~~T~~wL~~~gI~Y-d~Li   84 (124)
T d1xpja_          57 NVGKINIHTLPIITEWLDKHQVPY-DEIL   84 (124)
T ss_dssp             CHHHHHHHTHHHHHHHHHHTTCCC-SEEE
T ss_pred             cHHHHHHHHHHHHHHHHHHcCCCc-eEEE
Confidence                  556777888888887655 4565

>d1zs9a1 c.108.1.22 (A:4-256) E-1 enzyme {Human(Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Enolase-phosphatase E1
domain: E-1 enzyme
species: Human(Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0019  Score=53.72  Aligned_cols=83  Identities=11%  Similarity=-0.007  Sum_probs=63.2

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCc
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERG  186 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~  186 (326)
                      ....+||+.++|+++.+. +.+.|.|++.+..+..+++.+.-. .+|.....+-++...      .+..-+++++.+++.
T Consensus       125 ~~~~~pg~~e~l~~L~~~g~~l~i~Tn~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~~KP~p~~~~~~~~~~~~~p~~  203 (253)
T d1zs9a1         125 KAEFFADVVPAVRKWREAGMKVYIYSSGSVEAQKLLFGHSTEG-DILELVDGHFDTKIGHKVESESYRKIADSIGCSTNN  203 (253)
T ss_dssp             CBCCCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHTBTTB-CCGGGCSEEECGGGCCTTCHHHHHHHHHHHTSCGGG
T ss_pred             ccccCCCHHHHHHHHhhccCceeecCCCcHHHHHHHHHHcCcc-hhhhhcceeeccccccCCCcHHHHHHHHHhCCCcCc
Confidence            456789999999999765 999999999999999998877765 466643433333221      245566778889999


Q ss_pred             EEEEeCCchhh
Q 040058          187 IVILDDTESVW  197 (326)
Q Consensus       187 vvIvDD~~~vw  197 (326)
                      +++|+|+..-.
T Consensus       204 ~l~vgD~~~dv  214 (253)
T d1zs9a1         204 ILFLTDVTREA  214 (253)
T ss_dssp             EEEEESCHHHH
T ss_pred             EEEEeCCHHHH
Confidence            99999997544

>d2gmwa1 c.108.1.19 (A:24-205) D,D-heptose 1,7-bisphosphate phosphatase GmhB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Histidinol phosphatase-like
domain: D,D-heptose 1,7-bisphosphate phosphatase GmhB
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0022  Score=52.89  Aligned_cols=51  Identities=14%  Similarity=0.183  Sum_probs=37.0

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~  142 (326)
                      ..|+||+||||+.-..         |.. +.+    +         +++-||+.+.|+.+.+. |.+.|.|+.+.
T Consensus         3 ~Av~~DrDGtl~~~~~---------y~~-~~~----~---------~~~~~gv~e~l~~L~~~g~~~~ivTNq~~   54 (182)
T d2gmwa1           3 PAIFLDRDGTINVDHG---------YVH-EID----N---------FEFIDGVIDAMRELKKMGFALVVVTNQSG   54 (182)
T ss_dssp             CEEEECSBTTTBCCCS---------SCC-SGG----G---------CCBCTTHHHHHHHHHHTTCEEEEEEECTH
T ss_pred             CEEEEeCCCCccCCCC---------CCC-CHH----H---------eeECCCHHHHHHHHhhcCchhhhhhccch
Confidence            4689999999986321         111 111    1         25679999999999976 99999999764

>d1xvia_ c.108.1.10 (A:) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Escherichia coli [TaxId: 562]

Probab=95.82  E-value=0.0077  Score=49.49  Aligned_cols=59  Identities=24%  Similarity=0.247  Sum_probs=45.6

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYA  145 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA  145 (326)
                      +++.++.||||||+++..                               .+-|...+.|+++.+. ..+++.|.-+...+
T Consensus         3 ~~~li~~DlDGTLl~~~~-------------------------------~i~~~~~~al~~l~~~Gi~~~i~TGR~~~~~   51 (232)
T d1xvia_           3 QPLLVFSDLDGTLLDSHS-------------------------------YDWQPAAPWLTRLREANVPVILCSSKTSAEM   51 (232)
T ss_dssp             CCEEEEEECTTTTSCSSC-------------------------------CSCCTTHHHHHHHHHTTCCEEEECSSCHHHH
T ss_pred             CCEEEEEECCCCccCCcC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEeCCChhhc
Confidence            456677799999997531                               1345567788888766 89999999999999


Q ss_pred             HHHHHHhCCCC
Q 040058          146 EAAVKLLDLDS  156 (326)
Q Consensus       146 ~~v~~~LDP~~  156 (326)
                      ..+++.+..++
T Consensus        52 ~~~~~~~~~~~   62 (232)
T d1xvia_          52 LYLQKTLGLQG   62 (232)
T ss_dssp             HHHHHHTTCTT
T ss_pred             hhHHHHhccCC
Confidence            99999887654

>d1yj5a1 c.108.1.9 (A:144-338) 5' polynucleotide kinase-3' phosphatase, middle domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: phosphatase domain of polynucleotide kinase
domain: 5' polynucleotide kinase-3' phosphatase, middle domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.76  E-value=0.0043  Score=52.59  Aligned_cols=57  Identities=18%  Similarity=0.170  Sum_probs=40.8

Q ss_pred             cCceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST  141 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~  141 (326)
                      .++.+++||+||||+.......      +.....     +        +..+.|++.+.|+.+++. |.++|.|+.+
T Consensus        19 ~~~Kia~fDrDGtLik~~~~~~------~~~~~~-----d--------~~~l~~~v~~~i~~L~~~gy~iiIvTNQ~   76 (195)
T d1yj5a1          19 PQGKVAAFDLDGTLITTRSGKV------FPTSPS-----D--------WRILYPEIPKKLQELAAEGYKLVIFTNQM   76 (195)
T ss_dssp             CCSCEEEECSBTTTEECSSSCS------SCSSTT-----C--------CEESCTTHHHHHHHHHHHTCEEEEEEECH
T ss_pred             CcCcEEEEECCCceEeeCCCCc------CCCChh-----h--------ceeccCCHHHHHHHHHhCCcEEEEecCcc
Confidence            6678999999999998753211      110101     1        235789999999999765 9999999963

>d1in1a_ c.15.1.2 (A:) DNA ligase III alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: DNA ligase III alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.74  E-value=0.0026  Score=47.16  Aligned_cols=51  Identities=20%  Similarity=0.043  Sum_probs=36.8

Q ss_pred             ccC-CCcEEEEcCccch--HHHHHHHHH-------------------HhhhCCceEEchHHHHHHHHHhcCCC
Q 040058          270 SEF-SRDVLYFSAIFRD--CLWAEQEEK-------------------FLVQEKKFLVHPRWIDAYYFLWRRRP  320 (326)
Q Consensus       270 ~~v-~g~~ivfs~~~p~--~~~~~aea~-------------------~a~~~~~~vV~p~Wl~~~~~~w~r~~  320 (326)
                      .++ +||++++++..|.  .|+++--|.                   -....+.++|+|+||.+|+...+..|
T Consensus        14 ~diF~G~~~~i~~~~p~~~~L~r~i~a~GG~~~~~~~~~~vTHvI~~~~~~~~~~iV~p~Wi~dci~~~~lLP   86 (88)
T d1in1a_          14 LDIFTGVRLYLPPSTPDFSRLRRYFVAFDGDLVQEFDMTSATHVLGSRDKNPAAQQVSPEWIWACIRKRRLVA   86 (88)
T ss_dssp             CSSSTTCBCCCCTTSTTHHHHHHHHHHHTCBCCCTTCCTTCCCEESCCTTCTTSCEECHHHHHHHHHHTSCCC
T ss_pred             hhHhCCeEEEECCCCCCHHHHHHHHHHhCCEEeeeccCCCceEEEEcCCCCCCcEEEehHHHHHHHHcCCcCC
Confidence            467 9999999999985  565554311                   01123578999999999999877654

>d2bdua1 c.108.1.21 (A:7-297) Cytosolic 5'-nucleotidase III {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Pyrimidine 5'-nucleotidase (UMPH-1)
domain: Cytosolic 5'-nucleotidase III
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.61  E-value=0.0023  Score=57.59  Aligned_cols=95  Identities=15%  Similarity=0.166  Sum_probs=61.3

Q ss_pred             EEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCC---ccccceEEeecCCC---------CCcccc---C
Q 040058          114 LVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDS---KYFSSRIIAREDFN---------GKDRKN---P  177 (326)
Q Consensus       114 ~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~---~~F~~Ri~sRd~~~---------~~~~Kd---L  177 (326)
                      -+.+|||+.+|++.+.+. +.++|+|+|-..+++++++.+...-   .++.+++-..++..         ..+.|.   +
T Consensus       133 ~i~Lr~G~~e~~~~l~~~~i~~~IvSgG~~~~ie~vl~~lg~~~~ni~I~sN~l~f~~~~~~~~~~~~~i~~~~K~~~~~  212 (291)
T d2bdua1         133 DVMLKEGYENFFGKLQQHGIPVFIFSAGIGDVLEEVIRQAGVYHSNVKVVSNFMDFDENGVLKGFKGELIHVFNKHDGAL  212 (291)
T ss_dssp             CCCBCBTHHHHHHHHHHHTCCEEEEEEEEHHHHHHHHHHTTCCBTTEEEEEECEEECTTSBEEEECSSCCCTTCHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHcCCCccCceEEeeEEEEeCCeeEeeccCCccccccCcchhh
Confidence            478999999999999866 9999999999999999999886542   24555443222211         111111   1


Q ss_pred             ---C--CCCCCCCcEEEEeCCchhhc-----cCCCCeEEeC
Q 040058          178 ---D--LVRGQERGIVILDDTESVWS-----DHTENLIVLG  208 (326)
Q Consensus       178 ---~--~l~~~~~~vvIvDD~~~vw~-----~~~~N~I~I~  208 (326)
                         .  ....+.+.+|.+-|+..=..     .+.+|++.|.
T Consensus       213 ~~~~~~~~~~~~~~vI~iGDs~~Dl~Ma~g~~~~~~~l~ig  253 (291)
T d2bdua1         213 KNTDYFSQLKDNSNIILLGDSQGDLRMADGVANVEHILKIG  253 (291)
T ss_dssp             TTHHHHHHTTTCCEEEEEESSSGGGGTTTTCSCCSEEEEEE
T ss_pred             hhHHHHhccCCcCcEEEEeCCHhHHHHHhCCccccceeeee
Confidence               1  12245677999999875332     1345555543

>d2c4na1 c.108.1.14 (A:1-250) NagD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: NagD
species: Escherichia coli [TaxId: 562]

Probab=95.59  E-value=0.0048  Score=52.92  Aligned_cols=49  Identities=16%  Similarity=0.164  Sum_probs=35.7

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++.                                +.=|++.+|++.+.+. +.+.+.|+++....+.
T Consensus         4 k~VifDlDGTL~~~~--------------------------------~~i~~a~e~i~~l~~~g~~~~~~TN~~~~~~~~   51 (250)
T d2c4na1           4 KNVICDIDGVLMHDN--------------------------------VAVPGAAEFLHGIMDKGLPLVLLTNYPSQTGQD   51 (250)
T ss_dssp             CEEEEECBTTTEETT--------------------------------EECTTHHHHHHHHHHTTCCEEEEESCCSCCHHH
T ss_pred             CEEEEECCCeeEECC--------------------------------CcCccHHHHHHHHHHCCCcEEEEeCCCCCCHHH
Confidence            468999999998753                                1237888999999765 8888999766444333


Q ss_pred             HH
Q 040058          148 AV  149 (326)
Q Consensus       148 v~  149 (326)
                      +.
T Consensus        52 ~~   53 (250)
T d2c4na1          52 LA   53 (250)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>d1zrna_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Pseudomonas sp., strain YL [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Pseudomonas sp., strain YL [TaxId: 306]

Probab=95.41  E-value=0.0079  Score=49.41  Aligned_cols=79  Identities=9%  Similarity=0.037  Sum_probs=63.7

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      ....|++.++|+.+.+. +.+.|.|++...++..+++..... .+|.. +++.++...      .+.+-+++++.+++.+
T Consensus        92 ~~~~~~~~~~l~~l~~~~~~~~i~tn~~~~~~~~~~~~~~~~-~~fd~-~~~s~~~~~~KP~p~~~~~~~~~~g~~p~e~  169 (220)
T d1zrna_          92 LAPFSEVPDSLRELKRRGLKLAILSNGSPQSIDAVVSHAGLR-DGFDH-LLSVDPVQVYKPDNRVYELAEQALGLDRSAI  169 (220)
T ss_dssp             CEECTTHHHHHHHHHHTTCEEEEEESSCHHHHHHHHHHTTCG-GGCSE-EEESGGGTCCTTSHHHHHHHHHHHTSCGGGE
T ss_pred             ccccchhHHHHHHHHhcCCeEEeecchHHHHHHHHHhhcccc-ccccc-eeeeeeeeccccHHHHHHHHHHHhCCCCceE
Confidence            46889999999999654 899999999999999999988877 67875 555555443      1445567788899999


Q ss_pred             EEEeCCch
Q 040058          188 VILDDTES  195 (326)
Q Consensus       188 vIvDD~~~  195 (326)
                      ++|+|++.
T Consensus       170 l~VgD~~~  177 (220)
T d1zrna_         170 LFVASNAW  177 (220)
T ss_dssp             EEEESCHH
T ss_pred             EEEecChH
Confidence            99999974

>d2fuea1 c.108.1.10 (A:13-256) Phosphomannomutase 1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphomannomutase 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.25  E-value=0.011  Score=48.44  Aligned_cols=49  Identities=29%  Similarity=0.400  Sum_probs=32.7

Q ss_pred             ceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHH
Q 040058           68 KLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEA  147 (326)
Q Consensus        68 Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~  147 (326)
                      |+.+++||||||+++..                               .+-|...+-|+++.+.--+++.|.|....+..
T Consensus         1 k~i~lFDlDGTLl~~~~-------------------------------~is~~~~~~i~~l~~~g~~~i~tgrr~~~~~~   49 (244)
T d2fuea1           1 RVLCLFDVDGTLTPARQ-------------------------------KIDPEVAAFLQKLRSRVQIGVVGGSDYCKIAE   49 (244)
T ss_dssp             CEEEEEESBTTTBSTTS-------------------------------CCCHHHHHHHHHHTTTSEEEEECSSCHHHHHH
T ss_pred             CEEEEEccccCccCCCC-------------------------------cCCHHHHHHHHHHHhCCCEEEEecCChhhhhh
Confidence            45555699999997642                               13345677788888777677777665554433

>d1rkqa_ c.108.1.10 (A:) Hypothetical protein YidA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YidA
species: Escherichia coli [TaxId: 562]

Probab=95.06  E-value=0.0079  Score=51.30  Aligned_cols=55  Identities=22%  Similarity=0.302  Sum_probs=43.5

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++||||||+++..                               .+-|...+.|+++.+. ..++|.|--+...+..+
T Consensus         6 li~~DlDGTL~~~~~-------------------------------~i~~~~~~al~~L~~~gi~v~i~TGR~~~~~~~~   54 (271)
T d1rkqa_           6 LIAIDMDGTLLLPDH-------------------------------TISPAVKNAIAAARARGVNVVLTTGRPYAGVHNY   54 (271)
T ss_dssp             EEEECCCCCCSCTTS-------------------------------CCCHHHHHHHHHHHHTTCEEEEECSSCGGGTHHH
T ss_pred             EEEEeCCccccCCCC-------------------------------ccCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
Confidence            499999999987641                               1346677889988766 99999998888999888


Q ss_pred             HHHhCCC
Q 040058          149 VKLLDLD  155 (326)
Q Consensus       149 ~~~LDP~  155 (326)
                      ++.+.-.
T Consensus        55 ~~~l~l~   61 (271)
T d1rkqa_          55 LKELHME   61 (271)
T ss_dssp             HHHTTCC
T ss_pred             HHHhcCc
Confidence            8887543

>d1vjra_ c.108.1.14 (A:) Hypothetical protein TM1742 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Hypothetical protein TM1742
species: Thermotoga maritima [TaxId: 2336]

Probab=95.03  E-value=0.01  Score=50.86  Aligned_cols=42  Identities=21%  Similarity=0.218  Sum_probs=32.3

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~  142 (326)
                      ..++|||||||+++..                               .. |++.++|+.+.+. ..+++.|+++.
T Consensus         8 k~vlFDlDGTL~~~~~-------------------------------~i-~~a~e~l~~l~~~g~~~~~~TN~~~   50 (261)
T d1vjra_           8 ELFILDMDGTFYLDDS-------------------------------LL-PGSLEFLETLKEKNKRFVFFTNNSS   50 (261)
T ss_dssp             CEEEECCBTTTEETTE-------------------------------EC-TTHHHHHHHHHHTTCEEEEEESCTT
T ss_pred             CEEEEeCCCeeEECCc-------------------------------cC-chHHHHHHHHHHcCCCEEEEeCCCC
Confidence            4789999999998641                               13 7888899888765 78888887653

>d1kzyc1 c.15.1.4 (C:1714-1866) 53BP1 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: 53BP1
domain: 53BP1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.93  E-value=0.0042  Score=50.66  Aligned_cols=31  Identities=13%  Similarity=0.162  Sum_probs=28.7

Q ss_pred             HhhhCCceEEchHHHHHHHHHhcCCCCCCCC
Q 040058          295 FLVQEKKFLVHPRWIDAYYFLWRRRPEDDYL  325 (326)
Q Consensus       295 ~a~~~~~~vV~p~Wl~~~~~~w~r~~E~~f~  325 (326)
                      .|+..|++||++.||++|+...+..||+.|.
T Consensus       104 ~Ala~g~piv~~~Wi~~c~~~~~~ld~~~Yl  134 (153)
T d1kzyc1         104 LCLASGIPCVSHVWVHDSCHANQLQNYRNYL  134 (153)
T ss_dssp             HHHHHTCCEEETHHHHHHHHHTSCCCGGGSB
T ss_pred             HHHccCCcEEcHHHHHHHHHcCCcCChHHcc
Confidence            4677799999999999999999999999996

>d1wr8a_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Pyrococcus horikoshii [TaxId: 53953]

Probab=94.80  E-value=0.027  Score=45.99  Aligned_cols=58  Identities=24%  Similarity=0.254  Sum_probs=44.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      +.+++||||||+++..                               .+.|...+.|+++.+. ..+++.|.-+...+..
T Consensus         3 K~i~~D~DGTL~~~~~-------------------------------~i~~~~~~~l~~l~~~gi~v~~~TGR~~~~~~~   51 (230)
T d1wr8a_           3 KAISIDIDGTITYPNR-------------------------------MIHEKALEAIRRAESLGIPIMLVTGNTVQFAEA   51 (230)
T ss_dssp             CEEEEESTTTTBCTTS-------------------------------CBCHHHHHHHHHHHHTTCCEEEECSSCHHHHHH
T ss_pred             eEEEEecCCCCcCCCC-------------------------------ccCHHHHHHHHHHHhCCCeEEEEeCCcHHHHHH
Confidence            4789999999987531                               1345566777777655 7899999989999999


Q ss_pred             HHHHhCCCCc
Q 040058          148 AVKLLDLDSK  157 (326)
Q Consensus       148 v~~~LDP~~~  157 (326)
                      ++..+...+.
T Consensus        52 ~~~~~~~~~~   61 (230)
T d1wr8a_          52 ASILIGTSGP   61 (230)
T ss_dssp             HHHHHTCCSC
T ss_pred             HHHhcCCCcc
Confidence            9988877654

>d1l6ra_ c.108.1.10 (A:) Phosphoglycolate phosphatase, PGPase {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Phosphoglycolate phosphatase, PGPase
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=94.73  E-value=0.016  Score=48.32  Aligned_cols=60  Identities=12%  Similarity=0.069  Sum_probs=46.9

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~  147 (326)
                      ..+++||||||+++..                               .+-|++.+-|+.+.+. ..+++.|.-+..++..
T Consensus         4 Kli~~D~DGTL~~~~~-------------------------------~i~~~~~~al~~l~~~g~~v~~~TGr~~~~~~~   52 (225)
T d1l6ra_           4 RLAAIDVDGNLTDRDR-------------------------------LISTKAIESIRSAEKKGLTVSLLSGNVIPVVYA   52 (225)
T ss_dssp             CEEEEEHHHHSBCTTS-------------------------------CBCHHHHHHHHHHHHTTCEEEEECSSCHHHHHH
T ss_pred             EEEEEecCCCCcCCCC-------------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCchhhhHH
Confidence            4788999999996541                               2446777888888766 8899999989999999


Q ss_pred             HHHHhCCCCccc
Q 040058          148 AVKLLDLDSKYF  159 (326)
Q Consensus       148 v~~~LDP~~~~F  159 (326)
                      +.+.+...+.++
T Consensus        53 ~~~~~~~~~~~i   64 (225)
T d1l6ra_          53 LKIFLGINGPVF   64 (225)
T ss_dssp             HHHHHTCCSCEE
T ss_pred             HHHHcCCCceEE
Confidence            999998775443

>d1o08a_ c.108.1.6 (A:) beta-Phosphoglucomutase {Lactococcus lactis [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: beta-Phosphoglucomutase
species: Lactococcus lactis [TaxId: 1358]

Probab=94.70  E-value=0.0085  Score=49.45  Aligned_cols=78  Identities=17%  Similarity=0.179  Sum_probs=60.1

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcE
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGI  187 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~v  187 (326)
                      +.+-||+.++|+.+.+. +.+.+.|++  .++..+++.++-. .+|.. +++.++...      .+.+-+++++.+++.+
T Consensus        90 ~~~~~g~~~~l~~l~~~~~~i~i~s~~--~~~~~~l~~~~l~-~~f~~-i~~~~~~~~~KP~~~~~~~~l~~~~i~~~~~  165 (221)
T d1o08a_          90 ADVYPGILQLLKDLRSNKIKIALASAS--KNGPFLLERMNLT-GYFDA-IADPAEVAASKPAPDIFIAAAHAVGVAPSES  165 (221)
T ss_dssp             GGBCTTHHHHHHHHHHTTCEEEECCSC--TTHHHHHHHTTCG-GGCSE-ECCTTTSSSCTTSTHHHHHHHHHTTCCGGGE
T ss_pred             ccccCCceeccccccccccceEEEeec--chhhHHHHhhccc-ccccc-ccccccccccccChHHHHHHHHHcCCCCceE
Confidence            46789999999999866 778888876  4578899998887 57874 665665542      1456677788899999


Q ss_pred             EEEeCCchh
Q 040058          188 VILDDTESV  196 (326)
Q Consensus       188 vIvDD~~~v  196 (326)
                      |+|||++.-
T Consensus       166 l~VgD~~~d  174 (221)
T d1o08a_         166 IGLEDSQAG  174 (221)
T ss_dssp             EEEESSHHH
T ss_pred             EEEecCHHH
Confidence            999999843

>d1yv9a1 c.108.1.14 (A:4-256) Putative hydrolase EF1188 {Enterococcus faecalis [TaxId: 1351]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative hydrolase EF1188
species: Enterococcus faecalis [TaxId: 1351]

Probab=94.64  E-value=0.034  Score=47.24  Aligned_cols=54  Identities=19%  Similarity=0.327  Sum_probs=38.9

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCc----HHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMST----RCY  144 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~----~~Y  144 (326)
                      .+++||||||++...                               .. |++.++|+.+.+. ..+++.|+.+    +.+
T Consensus         4 ~v~fDlDGTL~~~~~-------------------------------~i-~~a~~~i~~l~~~g~~~~~~Tn~s~~~~~~~   51 (253)
T d1yv9a1           4 GYLIDLDGTIYLGKE-------------------------------PI-PAGKRFVERLQEKDLPFLFVTNNTTKSPETV   51 (253)
T ss_dssp             EEEECCBTTTEETTE-------------------------------EC-HHHHHHHHHHHHTTCCEEEEECCCSSCHHHH
T ss_pred             EEEEcCCCccEeCCC-------------------------------cC-ccHHHHHHHHHHCCCCEEEEeCCCCCCHHHH
Confidence            689999999987531                               23 7888999988765 8888888755    566


Q ss_pred             HHHHHHHhCCC
Q 040058          145 AEAAVKLLDLD  155 (326)
Q Consensus       145 A~~v~~~LDP~  155 (326)
                      ++.+...++..
T Consensus        52 ~~~L~~~~~~~   62 (253)
T d1yv9a1          52 AQRLANEFDIH   62 (253)
T ss_dssp             HHHHHHHSCCC
T ss_pred             HHHHHHhcCCc
Confidence            66655555543

>d1wvia_ c.108.1.14 (A:) Putative phosphatase SMU.1415c {Streptococcus mutans [TaxId: 1309]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: NagD-like
domain: Putative phosphatase SMU.1415c
species: Streptococcus mutans [TaxId: 1309]

Probab=94.56  E-value=0.011  Score=50.75  Aligned_cols=42  Identities=19%  Similarity=0.266  Sum_probs=30.4

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTR  142 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~  142 (326)
                      ..++|||||||+++..                                .=|++.++|+.+.+. ..+++-|+++.
T Consensus         3 k~vlFDlDGTL~~~~~--------------------------------~i~~a~e~l~~l~~~g~~~~~~TN~s~   45 (253)
T d1wvia_           3 KGYLIDLDGTIYKGKD--------------------------------RIPAGEDFVKRLQERQLPYILVTNNTT   45 (253)
T ss_dssp             CEEEEECBTTTEETTE--------------------------------ECHHHHHHHHHHHHHTCCEEEEECCCS
T ss_pred             CEEEEcCcCceEECCC--------------------------------cCccHHHHHHHHHHCCCCEEEEeCCCC
Confidence            3689999999998641                                227788888877644 77778887543

>d1wzca1 c.108.1.10 (A:1-243) Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Putative mannosyl-3-phosphoglycerate phosphatase MPGP (YedP)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=94.47  E-value=0.035  Score=45.79  Aligned_cols=56  Identities=20%  Similarity=0.249  Sum_probs=41.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhc-CceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASS-LVDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~-~yEl~IyT~g~~~YA~~  147 (326)
                      +.|++||||||++... +                                +-..+-|+++.+ -.++++-|.-+...+..
T Consensus         3 Kli~~DlDGTLl~~~~-~--------------------------------~~~~~ai~~l~~~G~~~~~aTGR~~~~~~~   49 (243)
T d1wzca1           3 RLIFLDIDKTLIPGYE-P--------------------------------DPAKPIIEELKDMGFEIIFNSSKTRAEQEY   49 (243)
T ss_dssp             EEEEECCBTTTBSSSC-S--------------------------------GGGHHHHHHHHHTTEEEEEECSSCHHHHHH
T ss_pred             EEEEEeCCCCCCCCCC-C--------------------------------HHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence            5789999999996431 1                                112344555554 48999999999999999


Q ss_pred             HHHHhCCCCc
Q 040058          148 AVKLLDLDSK  157 (326)
Q Consensus       148 v~~~LDP~~~  157 (326)
                      +++.++....
T Consensus        50 ~~~~~~~~~~   59 (243)
T d1wzca1          50 YRKELEVETP   59 (243)
T ss_dssp             HHHHHTCCSC
T ss_pred             HHHHhccccc
Confidence            9999988743

>d1nf2a_ c.108.1.10 (A:) Hypothetical protein TM0651 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein TM0651
species: Thermotoga maritima [TaxId: 2336]

Probab=94.09  E-value=0.041  Score=46.88  Aligned_cols=55  Identities=18%  Similarity=0.069  Sum_probs=40.4

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAV  149 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~  149 (326)
                      .+++||||||+++..                               .+-|...+.|+.+++.-.+++-|..+...+..++
T Consensus         4 li~~DlDGTL~~~~~-------------------------------~i~~~~~~al~~l~~~~~~~i~TGR~~~~~~~~~   52 (267)
T d1nf2a_           4 VFVFDLDGTLLNDNL-------------------------------EISEKDRRNIEKLSRKCYVVFASGRMLVSTLNVE   52 (267)
T ss_dssp             EEEEECCCCCSCTTS-------------------------------CCCHHHHHHHHHHTTTSEEEEECSSCHHHHHHHH
T ss_pred             EEEEeCCccccCCcC-------------------------------ccCHHHHHHHHHHHcCCEEEEECCCChHHHHHHH
Confidence            588999999997641                               2456777888888877677777776667777777


Q ss_pred             HHhCCC
Q 040058          150 KLLDLD  155 (326)
Q Consensus       150 ~~LDP~  155 (326)
                      +.+.+.
T Consensus        53 ~~~~~~   58 (267)
T d1nf2a_          53 KKYFKR   58 (267)
T ss_dssp             HHHSSS
T ss_pred             HHhccc
Confidence            665544

>d1nrwa_ c.108.1.10 (A:) Hypothetical protein YwpJ {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Hypothetical protein YwpJ
species: Bacillus subtilis [TaxId: 1423]

Probab=93.86  E-value=0.042  Score=46.74  Aligned_cols=56  Identities=18%  Similarity=0.223  Sum_probs=43.5

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++||||||++....                               +=|...+.|+++.+. ..+++-|.-+...+..+
T Consensus         3 li~~DlDGTLl~~~~~-------------------------------i~~~~~~~l~~l~~~Gi~~~i~TGR~~~~~~~~   51 (285)
T d1nrwa_           3 LIAIDLDGTLLNSKHQ-------------------------------VSLENENALRQAQRDGIEVVVSTGRAHFDVMSI   51 (285)
T ss_dssp             EEEEECCCCCSCTTSC-------------------------------CCHHHHHHHHHHHHTTCEEEEECSSCHHHHHHH
T ss_pred             EEEEECCccccCCCCc-------------------------------cCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHH
Confidence            5899999999976421                               235567788888766 88999998888888899


Q ss_pred             HHHhCCCC
Q 040058          149 VKLLDLDS  156 (326)
Q Consensus       149 ~~~LDP~~  156 (326)
                      ++.++.+.
T Consensus        52 ~~~l~~~~   59 (285)
T d1nrwa_          52 FEPLGIKT   59 (285)
T ss_dssp             HGGGTCCC
T ss_pred             HHHhCCCc
Confidence            98887663

>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: HAD-related
domain: L-2-Haloacid dehalogenase, HAD
species: Xanthobacter autotrophicus [TaxId: 280]

Probab=93.70  E-value=0.029  Score=46.46  Aligned_cols=88  Identities=8%  Similarity=0.006  Sum_probs=66.8

Q ss_pred             EEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC------CccccCCCCCCCCCcEE
Q 040058          115 VKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG------KDRKNPDLVRGQERGIV  188 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~------~~~KdL~~l~~~~~~vv  188 (326)
                      ....|++.+.|+.+.. +.+.+.|++...++..+++.++-. .+|.. +++.++.+.      .+.+-+++++.+++.+|
T Consensus        92 ~~~~~~~~~~L~~l~~-~~~~v~s~~~~~~~~~~~~~~~~~-~~fd~-v~~s~~~~~~KP~p~~f~~a~~~lg~~p~e~l  168 (245)
T d1qq5a_          92 LTPYPDAAQCLAELAP-LKRAILSNGAPDMLQALVANAGLT-DSFDA-VISVDAKRVFKPHPDSYALVEEVLGVTPAEVL  168 (245)
T ss_dssp             CCBCTTHHHHHHHHTT-SEEEEEESSCHHHHHHHHHHTTCG-GGCSE-EEEGGGGTCCTTSHHHHHHHHHHHCCCGGGEE
T ss_pred             cccchhhhHHHHHHhh-hceeEEeccchHHHHHHHhhcccc-ccccc-ccccccccccCccHHHHHHHHHHhCCChhhEE
Confidence            4678999999999964 678999999999999999988776 57874 666666543      14556777888999999


Q ss_pred             EEeCCchhhccCCCCeE
Q 040058          189 ILDDTESVWSDHTENLI  205 (326)
Q Consensus       189 IvDD~~~vw~~~~~N~I  205 (326)
                      +|+|++.-.......|+
T Consensus       169 ~VgD~~~di~~A~~aG~  185 (245)
T d1qq5a_         169 FVSSNGFDVGGAKNFGF  185 (245)
T ss_dssp             EEESCHHHHHHHHHHTC
T ss_pred             EEeCCHHHHHHHHHcCC
Confidence            99999853332234444

>d1s2oa1 c.108.1.10 (A:1-244) Sucrose-phosphatase Slr0953 {Synechocystis sp. pcc 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sucrose-phosphatase Slr0953
species: Synechocystis sp. pcc 6803 [TaxId: 1148]

Probab=93.69  E-value=0.026  Score=47.38  Aligned_cols=56  Identities=21%  Similarity=0.239  Sum_probs=40.8

Q ss_pred             CceEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           67 RKLQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        67 ~Kl~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      +|..+++||||||+.....                               . .-++.+++..++...++|-|.-+...+.
T Consensus         2 ~~~li~~DlDGTL~~~~~~-------------------------------~-~~~~~~~~~~~~g~~v~i~TGR~~~~~~   49 (244)
T d1s2oa1           2 RQLLLISDLDNTWVGDQQA-------------------------------L-EHLQEYLGDRRGNFYLAYATGRSYHSAR   49 (244)
T ss_dssp             CSEEEEECTBTTTBSCHHH-------------------------------H-HHHHHHHHTTGGGEEEEEECSSCHHHHH
T ss_pred             CceEEEEECcccCCCCCCC-------------------------------H-HHHHHHHHHHcCCCEEEEECCCCHHHHH
Confidence            5778889999999864311                               0 1134566666677889999999999999


Q ss_pred             HHHHHhCC
Q 040058          147 AAVKLLDL  154 (326)
Q Consensus       147 ~v~~~LDP  154 (326)
                      ++++.+..
T Consensus        50 ~~~~~~~~   57 (244)
T d1s2oa1          50 ELQKQVGL   57 (244)
T ss_dssp             HHHHHHTC
T ss_pred             HHHHHcCC
Confidence            99887754

>d1u02a_ c.108.1.15 (A:) Trehalose-6-phosphate phosphatase related protein {Archaeon Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Trehalose-phosphatase
domain: Trehalose-6-phosphate phosphatase related protein
species: Archaeon Thermoplasma acidophilum [TaxId: 2303]

Probab=93.60  E-value=0.032  Score=45.40  Aligned_cols=51  Identities=14%  Similarity=0.059  Sum_probs=36.5

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAE  146 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~  146 (326)
                      .|++||||||+.....+.-                          -.+.|-+.+.|+++.+...++|-|.-+...+.
T Consensus         2 Li~~DlDGTL~~~~~~~~~--------------------------~~i~~~~~~~l~~l~~~~~v~i~TGR~~~~l~   52 (229)
T d1u02a_           2 LIFLDYDGTLVPIIMNPEE--------------------------SYADAGLLSLISDLKERFDTYIVTGRSPEEIS   52 (229)
T ss_dssp             EEEEECBTTTBCCCSCGGG--------------------------CCCCHHHHHHHHHHHHHSEEEEECSSCHHHHH
T ss_pred             EEEEEecCCCCCCCCChhh--------------------------CCCCHHHHHHHHHHhhCCCEEEEcCCCHHHhh
Confidence            5899999999965433210                          03678889999999888888888776655543

>d2b30a1 c.108.1.10 (A:18-300) PFL1270w orthologue {Plasmodium vivax [TaxId: 5855]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: PFL1270w orthologue
species: Plasmodium vivax [TaxId: 5855]

Probab=92.80  E-value=0.05  Score=45.94  Aligned_cols=55  Identities=16%  Similarity=0.124  Sum_probs=40.5

Q ss_pred             eEEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhh-cCceEEEEcCCcHHHHHH
Q 040058           69 LQLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQAS-SLVDIYLCTMSTRCYAEA  147 (326)
Q Consensus        69 l~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls-~~yEl~IyT~g~~~YA~~  147 (326)
                      ..|++||||||+.... .                             .+-|...+.|+++. +-..++|-|.-+...+..
T Consensus        11 kli~~DlDGTLl~~~~-~-----------------------------~i~~~~~~al~~l~~~Gi~v~i~TGR~~~~~~~   60 (283)
T d2b30a1          11 KLLLIDFDGTLFVDKD-I-----------------------------KVPSENIDAIKEAIEKGYMVSICTGRSKVGILS   60 (283)
T ss_dssp             CEEEEETBTTTBCCTT-T-----------------------------CSCHHHHHHHHHHHHHTCEEEEECSSCHHHHHH
T ss_pred             cEEEEECCCCCcCCCC-C-----------------------------cCCHHHHHHHHHHHHCCCEEEEEcCCCHHHHHH
Confidence            4789999999984221 0                             24566677777775 448899999999999888


Q ss_pred             HHHHhC
Q 040058          148 AVKLLD  153 (326)
Q Consensus       148 v~~~LD  153 (326)
                      +++.+.
T Consensus        61 ~~~~l~   66 (283)
T d2b30a1          61 AFGEEN   66 (283)
T ss_dssp             HHCHHH
T ss_pred             HHHHhC
Confidence            887654

>d1j97a_ c.108.1.4 (A:) Phosphoserine phosphatase {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Phosphoserine phosphatase
domain: Phosphoserine phosphatase
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=92.49  E-value=0.02  Score=45.97  Aligned_cols=79  Identities=13%  Similarity=0.045  Sum_probs=55.2

Q ss_pred             EEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC----------C------ccccC
Q 040058          115 VKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG----------K------DRKNP  177 (326)
Q Consensus       115 vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~----------~------~~KdL  177 (326)
                      ....+|+.++++.+... +.+++.|.+...++....+..... .+|...+. .++...          .      ..+-+
T Consensus        74 ~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (210)
T d1j97a_          74 ITPTEGAEETIKELKNRGYVVAVVSGGFDIAVNKIKEKLGLD-YAFANRLI-VKDGKLTGDVEGEVLKENAKGEILEKIA  151 (210)
T ss_dssp             CCBCTTHHHHHHHHHHTTCEEEEEEEEEHHHHHHHHHHHTCS-EEEEEEEE-EETTEEEEEEECSSCSTTHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHcCCEEEeecccccccccchhhccchh-hhhhhhhc-cccccccccccccccccccccchhhhHH
Confidence            46889999999999866 999999999999999999998887 45554333 333211          0      00011


Q ss_pred             CCCCCCCCcEEEEeCCch
Q 040058          178 DLVRGQERGIVILDDTES  195 (326)
Q Consensus       178 ~~l~~~~~~vvIvDD~~~  195 (326)
                      ..++.+++.++.+-|+..
T Consensus       152 ~~~~~~~~~~i~iGDs~n  169 (210)
T d1j97a_         152 KIEGINLEDTVAVGDGAN  169 (210)
T ss_dssp             HHHTCCGGGEEEEESSGG
T ss_pred             HHhcccccceEEecCCcC
Confidence            123456778999999873

>d1rlma_ c.108.1.10 (A:) Sugar phosphatase SupH (YbiV) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar phosphatase SupH (YbiV)
species: Escherichia coli [TaxId: 562]

Probab=92.17  E-value=0.03  Score=47.50  Aligned_cols=56  Identities=11%  Similarity=0.066  Sum_probs=41.2

Q ss_pred             EEEEeCCCceeeecccCCCCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHH
Q 040058           70 QLVLNLDHTLLHCRNIKSLSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAA  148 (326)
Q Consensus        70 ~LVLDLD~TLIhs~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v  148 (326)
                      .+++||||||+.+...                              ...|...+.|+.+.+. ..+++-|.-+...+.++
T Consensus         4 li~~DlDGTLl~~~~~------------------------------~~~~~~~~~l~~l~~~gi~~~i~TGR~~~~~~~~   53 (269)
T d1rlma_           4 VIVTDMDGTFLNDAKT------------------------------YNQPRFMAQYQELKKRGIKFVVASGNQYYQLISF   53 (269)
T ss_dssp             EEEECCCCCCSCTTSC------------------------------CCHHHHHHHHHHHHHHTCEEEEECSSCHHHHGGG
T ss_pred             EEEEeCCccCcCCCCc------------------------------CChHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHH
Confidence            5889999999975421                              1335677778877655 88899998888877777


Q ss_pred             HHHhCCC
Q 040058          149 VKLLDLD  155 (326)
Q Consensus       149 ~~~LDP~  155 (326)
                      ++.++..
T Consensus        54 ~~~l~~~   60 (269)
T d1rlma_          54 FPELKDE   60 (269)
T ss_dssp             CTTTTTT
T ss_pred             HHHhCcc
Confidence            7766654

>d2b82a1 c.108.1.12 (A:4-212) Class B acid phosphatase, AphA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Class B acid phosphatase, AphA
domain: Class B acid phosphatase, AphA
species: Escherichia coli [TaxId: 562]

Probab=89.10  E-value=0.039  Score=47.02  Aligned_cols=123  Identities=15%  Similarity=0.172  Sum_probs=62.6

Q ss_pred             cCceEEEEeCCCceeeecccCC------CCccchhhhccccccccceeeccceEEEEeCccHHHHHHHhhcC-ceEEEEc
Q 040058           66 ERKLQLVLNLDHTLLHCRNIKS------LSSGEKYLKKQIHSFIGSLFQMANDKLVKLRPFVRTFLEQASSL-VDIYLCT  138 (326)
Q Consensus        66 ~~Kl~LVLDLD~TLIhs~~~~~------~~~~e~~l~~~~~~~~~~l~~~~~~~~vklRPgl~eFL~~ls~~-yEl~IyT  138 (326)
                      .+++.+|||+|+|++.++...-      ......++..+...   +.+.....-.-.--||+.+||+.+.+. .+|+.-|
T Consensus        33 ~~P~AIifDIDETvLdnspy~~~~~~~~~~~~~~y~~~~~~W---~~~~~~~~~~A~p~pga~~fl~~~~~~Gv~IfyVT  109 (209)
T d2b82a1          33 RPPMAVGFDIDDTVLFSSPGFWRGKKTFSPESEDYLKNPVFW---EKMNNGWDEFSIPKEVARQLIDMHVRRGDAIFFVT  109 (209)
T ss_dssp             CCCCEEEECCBTTTEECHHHHHHHHHHHCTTSSGGGGCHHHH---HHHHTTGGGGCEECHHHHHHHHHHHHHTCEEEEEE
T ss_pred             CCCceEEEcchhhhhcCcHHHHhhhhhcCcCcccccCCCcch---HHHhcccccccCcchhHHHHHHHHHHcCCeEEEEe
Confidence            5567999999999999874210      00001111111000   000000000112458999999999766 9999999


Q ss_pred             CCcHHHHHHHHHHh----C-CCCccccceEEeecCCCCCccccCCC--CCCCCCcEEEEeCCchhh
Q 040058          139 MSTRCYAEAAVKLL----D-LDSKYFSSRIIAREDFNGKDRKNPDL--VRGQERGIVILDDTESVW  197 (326)
Q Consensus       139 ~g~~~YA~~v~~~L----D-P~~~~F~~Ri~sRd~~~~~~~KdL~~--l~~~~~~vvIvDD~~~vw  197 (326)
                      +-++...+..++.|    . |.... .+-++.+++..    |.-++  + .+.+-++.+.|...-+
T Consensus       110 nR~~~~~e~T~~nL~K~lG~p~~~~-~~vll~~~~~~----K~~rr~~I-k~y~I~l~~GD~l~Df  169 (209)
T d2b82a1         110 GRSPTKTETVSKTLADNFHIPATNM-NPVIFAGDKPG----QNTKSQWL-QDKNIRIFYGDSDNDI  169 (209)
T ss_dssp             CSCCCSSCCHHHHHHHHTTCCTTTB-CCCEECCCCTT----CCCSHHHH-HHTTEEEEEESSHHHH
T ss_pred             CCchhhHHHHHHHHHHHcCCCcccc-cceEeeCCCCC----chHHHHHH-HHcCeEEEecCCHHHH
Confidence            97665544444333    2 32221 12344333321    21111  1 2345578888887544

>d1l7ba_ c.15.1.2 (A:) NAD+-dependent DNA ligase, domain 4 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: BRCT domain
superfamily: BRCT domain
family: DNA ligase
domain: NAD+-dependent DNA ligase, domain 4
species: Thermus thermophilus [TaxId: 274]

Probab=85.46  E-value=0.65  Score=33.84  Aligned_cols=44  Identities=2%  Similarity=-0.282  Sum_probs=36.4

Q ss_pred             CCcEEEEcCccch---HHHHHHH--------------------------HHHhhhCCceEEchHHHHHHHHHh
Q 040058          273 SRDVLYFSAIFRD---CLWAEQE--------------------------EKFLVQEKKFLVHPRWIDAYYFLW  316 (326)
Q Consensus       273 ~g~~ivfs~~~p~---~~~~~ae--------------------------a~~a~~~~~~vV~p~Wl~~~~~~w  316 (326)
                      +|..|+|+|.+..   .+..++|                          .+.|++.|+.||+..|+.+.+..=
T Consensus         9 ~G~~iv~TG~~~~~R~e~~~~i~~~Gg~v~~sVs~~t~~LV~g~~~g~K~~kA~~~gI~IisE~~f~~~l~~~   81 (92)
T d1l7ba_           9 KGLTFVITGELSRPREEVKALLRRLGAKVTDSVSRKTSYLVVGENPGSKLEKARALGVPTLTEEELYRLLEAR   81 (92)
T ss_dssp             TTCEEECSTTTTSCHHHHHHHHHHTTCEEESCCSSSCCCBEECSSSSTTHHHHHCSSSCCEEHHHHHHHHHHH
T ss_pred             CCCEEEEeCCccCCHHHHHHHHHHhCCEEcCccccceeEEEECCCCCcHHHHHHHcCCcEecHHHHHHHHHhC
Confidence            8999999999754   5777776                          356888999999999999988753

>d2rbka1 c.108.1.10 (A:2-261) Sugar-phosphate phosphatase BT4131 {Bacteroides thetaiotaomicron [TaxId: 818]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Predicted hydrolases Cof
domain: Sugar-phosphate phosphatase BT4131
species: Bacteroides thetaiotaomicron [TaxId: 818]

Probab=84.47  E-value=0.15  Score=42.86  Aligned_cols=14  Identities=29%  Similarity=0.463  Sum_probs=11.7

Q ss_pred             eEEEEeCCCceeee
Q 040058           69 LQLVLNLDHTLLHC   82 (326)
Q Consensus        69 l~LVLDLD~TLIhs   82 (326)
                      +.+++||||||+..
T Consensus         2 k~if~DlDGTL~~~   15 (260)
T d2rbka1           2 KALFFDIDGTLVSF   15 (260)
T ss_dssp             CEEEECSBTTTBCT
T ss_pred             eEEEEECCCCCcCC
Confidence            46799999999964

>d2b8ea1 c.108.1.7 (A:416-434,A:548-663) Cation-transporting ATPase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Meta-cation ATPase, catalytic domain P
domain: Cation-transporting ATPase
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=82.77  E-value=1.7  Score=33.46  Aligned_cols=40  Identities=20%  Similarity=0.259  Sum_probs=37.3

Q ss_pred             EeCccHHHHHHHhhcC-ceEEEEcCCcHHHHHHHHHHhCCC
Q 040058          116 KLRPFVRTFLEQASSL-VDIYLCTMSTRCYAEAAVKLLDLD  155 (326)
Q Consensus       116 klRPgl~eFL~~ls~~-yEl~IyT~g~~~YA~~v~~~LDP~  155 (326)
                      .+||++.+.++.+.+. .+++|-|-....-|..+.+.|+-+
T Consensus        21 ~lr~~a~~~I~~L~~~Gi~v~ilTGD~~~~a~~ia~~lgI~   61 (135)
T d2b8ea1          21 TLKESAKPAVQELKRMGIKVGMITGDNWRSAEAISRELNLD   61 (135)
T ss_dssp             CBCTTHHHHHHHHHHTTCEEEEECSSCHHHHHHHHHHHTCS
T ss_pred             CCCccHHHHHHHHHHcCCEEEEEcCcchhhhhHHHhhhhhh
Confidence            4999999999999887 999999999999999999999865

>d1rkua_ c.108.1.11 (A:) Homoserine kinase ThrH {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Homoserine kinase ThrH
domain: Homoserine kinase ThrH
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=82.12  E-value=0.23  Score=39.20  Aligned_cols=81  Identities=7%  Similarity=0.075  Sum_probs=53.3

Q ss_pred             EEEEeCccHHHHHHHhhcCceEEEEcCCcHHHHHHHHHHhCCCCccccceEEeecCCCC-------C--ccccCCCCCCC
Q 040058          113 KLVKLRPFVRTFLEQASSLVDIYLCTMSTRCYAEAAVKLLDLDSKYFSSRIIAREDFNG-------K--DRKNPDLVRGQ  183 (326)
Q Consensus       113 ~~vklRPgl~eFL~~ls~~yEl~IyT~g~~~YA~~v~~~LDP~~~~F~~Ri~sRd~~~~-------~--~~KdL~~l~~~  183 (326)
                      ..+...|+.+.+.......+.+.+.|.|....+..+...+.... .+.+.+........       .  ..+....++.+
T Consensus        66 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~  144 (206)
T d1rkua_          66 ATLKPLEGAVEFVDWLRERFQVVILSDTFYEFSQPLMRQLGFPT-LLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSL  144 (206)
T ss_dssp             TTCCCCTTHHHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTCCC-EEEEEEEECTTSCEEEEECCSSSHHHHHHHHHHHT
T ss_pred             hhccccchHHHHHHHhhcCceEEEeccCchHHHHHHHHHhCCch-hhcceeeeecccccccccccchhhHHHHHHHhccc
Confidence            34578999999999998899999999999999999999888763 34433332222111       0  01111223456


Q ss_pred             CCcEEEEeCCc
Q 040058          184 ERGIVILDDTE  194 (326)
Q Consensus       184 ~~~vvIvDD~~  194 (326)
                      .+.|+-+=|..
T Consensus       145 ~~eviaiGDg~  155 (206)
T d1rkua_         145 YYRVIAAGDSY  155 (206)
T ss_dssp             TCEEEEEECSS
T ss_pred             ccceEEecCCc
Confidence            67777777665

>d1te2a_ c.108.1.6 (A:) Phosphatase YniC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: beta-Phosphoglucomutase-like
domain: Phosphatase YniC
species: Escherichia coli [TaxId: 562]

Probab=80.56  E-value=0.25  Score=39.91  Aligned_cols=15  Identities=20%  Similarity=0.499  Sum_probs=13.0

Q ss_pred             eEEEEeCCCceeeec
Q 040058           69 LQLVLNLDHTLLHCR   83 (326)
Q Consensus        69 l~LVLDLD~TLIhs~   83 (326)
                      ..+|+|+||||++|.
T Consensus         4 ~a~iFD~DGTL~dt~   18 (218)
T d1te2a_           4 LAAIFDMDGLLIDSE   18 (218)
T ss_dssp             CEEEECCBTTTBCCH
T ss_pred             eEEEECCCCcccCCH
Confidence            468999999999874