Citrus Sinensis ID: 040070

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130--
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
ccccHHHHHHHHHHHHccccEEEEEEEEccccEEEEEEEccccccHHHHHcccccccccEEEEEEEEEcccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHcccEEEEEEEcccccccHHHHHHccc
cEEcHHHHHHHHHHHHHccccEEEEEEEccccEEEEEEEccccccHHHHHccccccccEEEEEEEEEEcccccEEEEEEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEcccccHcHHHHHHHHc
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVervgspqasyedftkslpadecrhavfdfdfttsenvqkSKIFFIAwapdasrvrsKMVYASSKDRFKRELDGIHVelqatdpsemsldiikgral
mavhdeckLKFLelkakrnhrfivfkidekiqqvTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFfiawapdasrvrSKMVYASSKDRFKRELDGIHvelqatdpsemsldiikgral
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
******CKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGS**ASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVY************************************
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query132 2.2.26 [Sep-21-2011]
Q9LQ81140 Actin-depolymerizing fact yes no 0.984 0.928 0.807 4e-60
Q6EUH7139 Actin-depolymerizing fact yes no 1.0 0.949 0.810 1e-59
P30175139 Actin-depolymerizing fact N/A no 1.0 0.949 0.795 2e-59
Q8LFH6137 Actin-depolymerizing fact no no 0.984 0.948 0.803 5e-59
Q570Y6140 Actin-depolymerizing fact no no 0.984 0.928 0.776 4e-58
Q67ZM4137 Actin-depolymerizing fact no no 0.984 0.948 0.787 4e-57
Q9ZSK3139 Actin-depolymerizing fact no no 0.984 0.935 0.753 2e-56
Q7XSN9139 Actin-depolymerizing fact no no 1.0 0.949 0.757 2e-56
Q9FVI2139 Actin-depolymerizing fact N/A no 0.992 0.942 0.740 3e-56
Q9FVI1143 Actin-depolymerizing fact N/A no 0.992 0.916 0.740 7e-56
>sp|Q9LQ81|ADF10_ARATH Actin-depolymerizing factor 10 OS=Arabidopsis thaliana GN=ADF10 PE=2 SV=1 Back     alignment and function desciption
 Score =  229 bits (584), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 105/130 (80%), Positives = 120/130 (92%)

Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           M V DECKLKFLELKAKRN+RFIVFKIDEK QQV ++++G+P+ +YEDFT+S+P DECR+
Sbjct: 8   MHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRY 67

Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           AV+D+DFTT EN QKSKIFFIAW+PD SRVRSKM+YASSKDRFKRELDGI VELQATDPS
Sbjct: 68  AVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSLDIIKGR 130
           EMSLDIIKGR
Sbjct: 128 EMSLDIIKGR 137
Actin-depolymerizing protein. Severs actin filaments (F-actin) and binds to actin monomers.
Arabidopsis thaliana (taxid: 3702)
>sp|Q6EUH7|ADF1_ORYSJ Actin-depolymerizing factor 1 OS=Oryza sativa subsp. japonica GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|P30175|ADF_LILLO Actin-depolymerizing factor OS=Lilium longiflorum PE=2 SV=1 Back     alignment and function description
>sp|Q8LFH6|ADF12_ARATH Actin-depolymerizing factor 12 OS=Arabidopsis thaliana GN=ADF12 PE=2 SV=2 Back     alignment and function description
>sp|Q570Y6|ADF8_ARATH Actin-depolymerizing factor 8 OS=Arabidopsis thaliana GN=ADF8 PE=2 SV=2 Back     alignment and function description
>sp|Q67ZM4|ADF7_ARATH Actin-depolymerizing factor 7 OS=Arabidopsis thaliana GN=ADF7 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZSK3|ADF4_ARATH Actin-depolymerizing factor 4 OS=Arabidopsis thaliana GN=ADF4 PE=2 SV=2 Back     alignment and function description
>sp|Q7XSN9|ADF6_ORYSJ Actin-depolymerizing factor 6 OS=Oryza sativa subsp. japonica GN=ADF6 PE=2 SV=2 Back     alignment and function description
>sp|Q9FVI2|ADF1_PETHY Actin-depolymerizing factor 1 OS=Petunia hybrida GN=ADF1 PE=2 SV=1 Back     alignment and function description
>sp|Q9FVI1|ADF2_PETHY Actin-depolymerizing factor 2 OS=Petunia hybrida GN=ADF2 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
225454162139 PREDICTED: actin-depolymerizing factor 1 1.0 0.949 0.878 1e-63
297745256 256 unnamed protein product [Vitis vinifera] 1.0 0.515 0.878 1e-63
302143877132 unnamed protein product [Vitis vinifera] 1.0 1.0 0.856 8e-61
225470195 401 PREDICTED: uncharacterized protein LOC10 1.0 0.329 0.856 8e-61
255537425139 actin depolymerizing factor, putative [R 1.0 0.949 0.803 6e-60
15223471140 actin depolymerizing factor 11 [Arabidop 0.984 0.928 0.807 3e-58
374256017179 putative actin depolymerizing factor pro 0.992 0.731 0.786 4e-58
192912958139 actin depolymerizing factor [Elaeis guin 0.992 0.942 0.786 4e-58
192910710139 actin depolymerizing factor [Elaeis guin 0.992 0.942 0.786 6e-58
224053929141 predicted protein [Populus trichocarpa] 1.0 0.936 0.780 7e-58
>gi|225454162|ref|XP_002271495.1| PREDICTED: actin-depolymerizing factor 10 [Vitis vinifera] gi|147779701|emb|CAN73839.1| hypothetical protein VITISV_012391 [Vitis vinifera] Back     alignment and taxonomy information
 Score =  247 bits (630), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 116/132 (87%), Positives = 124/132 (93%)

Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           MAVHDECKLKFLELKAKRNHRFIVFKIDE+IQQV VE++GSP  +YEDFT SLPADECR+
Sbjct: 8   MAVHDECKLKFLELKAKRNHRFIVFKIDERIQQVMVEKLGSPDETYEDFTNSLPADECRY 67

Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           AVFDFDFTT EN QKSKIFFIAW+PD SRVRSKM+YASSKDRFKRELDGI VELQATDPS
Sbjct: 68  AVFDFDFTTDENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query: 121 EMSLDIIKGRAL 132
           EMS+DIIKGRAL
Sbjct: 128 EMSMDIIKGRAL 139

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297745256|emb|CBI40336.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|302143877|emb|CBI22738.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225470195|ref|XP_002268512.1| PREDICTED: uncharacterized protein LOC100242054 [Vitis vinifera] Back     alignment and taxonomy information
>gi|255537425|ref|XP_002509779.1| actin depolymerizing factor, putative [Ricinus communis] gi|223549678|gb|EEF51166.1| actin depolymerizing factor, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|15223471|ref|NP_171680.1| actin depolymerizing factor 11 [Arabidopsis thaliana] gi|17366957|sp|Q9LQ81.1|ADF10_ARATH RecName: Full=Actin-depolymerizing factor 10; Short=ADF-10; Short=AtADF10 gi|8671845|gb|AAF78408.1|AC009273_14 Contains similarity to actin depolymerizing factor 4 from Arabidopsis thaliana gb|AF102822. It contains cofilin/tropomyosin-type actin-binding proteins PF|00241. EST gb|AA720247 comes from this gene [Arabidopsis thaliana] gi|18252951|gb|AAL62402.1| actin depolymerizing factor, putative [Arabidopsis thaliana] gi|21593877|gb|AAM65844.1| Actin-depolymerizing factor like At1g01750 (ADF-like) [Arabidopsis thaliana] gi|24899845|gb|AAN65137.1| actin depolymerizing factor, putative [Arabidopsis thaliana] gi|332189210|gb|AEE27331.1| actin depolymerizing factor 11 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|374256017|gb|AEZ00870.1| putative actin depolymerizing factor protein, partial [Elaeis guineensis] Back     alignment and taxonomy information
>gi|192912958|gb|ACF06587.1| actin depolymerizing factor [Elaeis guineensis] Back     alignment and taxonomy information
>gi|192910710|gb|ACF06463.1| actin depolymerizing factor [Elaeis guineensis] Back     alignment and taxonomy information
>gi|224053929|ref|XP_002298043.1| predicted protein [Populus trichocarpa] gi|222845301|gb|EEE82848.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query132
TAIR|locus:2198175140 ADF11 "actin depolymerizing fa 0.984 0.928 0.807 2.1e-54
TAIR|locus:2156727137 ADF10 "actin depolymerizing fa 0.984 0.948 0.803 3.8e-53
TAIR|locus:2127073140 ADF8 "actin depolymerizing fac 0.984 0.928 0.776 6.3e-53
TAIR|locus:2131879137 ADF7 "actin depolymerizing fac 0.984 0.948 0.787 9.2e-52
TAIR|locus:2168063139 ADF4 "actin depolymerizing fac 0.984 0.935 0.753 1.2e-51
TAIR|locus:2077122150 ADF1 "actin depolymerizing fac 0.992 0.873 0.732 1.3e-50
TAIR|locus:2168052139 ADF3 "actin depolymerizing fac 0.992 0.942 0.694 1.1e-48
TAIR|locus:2077107137 ADF2 "actin depolymerizing fac 0.969 0.934 0.7 1.2e-47
TAIR|locus:2059861143 ADF5 "actin depolymerizing fac 0.992 0.916 0.595 5.3e-40
TAIR|locus:2042546146 ADF6 "actin depolymerizing fac 0.992 0.897 0.572 8.7e-40
TAIR|locus:2198175 ADF11 "actin depolymerizing factor 11" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 562 (202.9 bits), Expect = 2.1e-54, P = 2.1e-54
 Identities = 105/130 (80%), Positives = 120/130 (92%)

Query:     1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
             M V DECKLKFLELKAKRN+RFIVFKIDEK QQV ++++G+P+ +YEDFT+S+P DECR+
Sbjct:     8 MHVSDECKLKFLELKAKRNYRFIVFKIDEKAQQVMIDKLGNPEETYEDFTRSIPEDECRY 67

Query:    61 AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
             AV+D+DFTT EN QKSKIFFIAW+PD SRVRSKM+YASSKDRFKRELDGI VELQATDPS
Sbjct:    68 AVYDYDFTTPENCQKSKIFFIAWSPDTSRVRSKMLYASSKDRFKRELDGIQVELQATDPS 127

Query:   121 EMSLDIIKGR 130
             EMSLDIIKGR
Sbjct:   128 EMSLDIIKGR 137
GO:0003779 "actin binding" evidence=IEA
GO:0005622 "intracellular" evidence=IEA;ISS
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0010054 "trichoblast differentiation" evidence=RCA
TAIR|locus:2156727 ADF10 "actin depolymerizing factor 10" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127073 ADF8 "actin depolymerizing factor 8" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2131879 ADF7 "actin depolymerizing factor 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168063 ADF4 "actin depolymerizing factor 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077122 ADF1 "actin depolymerizing factor 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2168052 ADF3 "actin depolymerizing factor 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2077107 ADF2 "actin depolymerizing factor 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2059861 ADF5 "actin depolymerizing factor 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042546 ADF6 "actin depolymerizing factor 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P0CM06COFI_CRYNJNo assigned EC number0.40320.90900.8695yesno
Q41764ADF3_MAIZENo assigned EC number0.59540.99240.9424N/Ano
Q9FVI2ADF1_PETHYNo assigned EC number0.74040.99240.9424N/Ano
Q9FVI1ADF2_PETHYNo assigned EC number0.74040.99240.9160N/Ano
P0DJ27COFB_DICDINo assigned EC number0.37700.91660.8832yesno
P46251ADF1_MAIZENo assigned EC number0.64880.99240.9424N/Ano
Q6C0Y0COFI_YARLINo assigned EC number0.41400.95450.8235yesno
Q9HF97COFI_ZYGRONo assigned EC number0.39060.95450.8811yesno
Q03048COFI_YEASTNo assigned EC number0.40620.95450.8811yesno
Q0DLA3ADF7_ORYSJNo assigned EC number0.74800.99240.9424nono
Q9ZSK3ADF4_ARATHNo assigned EC number0.75380.98480.9352nono
Q759P0COFI_ASHGONo assigned EC number0.3750.95450.8811yesno
Q6EUH7ADF1_ORYSJNo assigned EC number0.81061.00.9496yesno
Q39250ADF1_ARATHNo assigned EC number0.73280.99240.9424nono
Q9LQ81ADF10_ARATHNo assigned EC number0.80760.98480.9285yesno
Q8LFH6ADF12_ARATHNo assigned EC number0.80300.98480.9489nono
P30175ADF_LILLONo assigned EC number0.79541.00.9496N/Ano
P30174ADF_BRANANo assigned EC number0.79060.95451.0N/Ano
P45594CADF_DROMENo assigned EC number0.40140.93930.8378yesno
P0DJ26COFA_DICDINo assigned EC number0.37700.91660.8832yesno
Q67ZM4ADF7_ARATHNo assigned EC number0.78780.98480.9489nono
Q4I963COFI_GIBZENo assigned EC number0.34300.93930.8104yesno
P78929COFI_SCHPONo assigned EC number0.40.93180.8978yesno
Q6FV81COFI_CANGANo assigned EC number0.41400.95450.8811yesno
Q43694ADF2_MAIZENo assigned EC number0.67170.99240.9424N/Ano
Q6CQ22COFI_KLULANo assigned EC number0.38280.95450.8811yesno
Q7XSN9ADF6_ORYSJNo assigned EC number0.75751.00.9496nono
Q570Y6ADF8_ARATHNo assigned EC number0.77690.98480.9285nono
Q6BWX4COFI_DEBHANo assigned EC number0.36640.97720.9020yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
PLN03216141 PLN03216, PLN03216, actin depolymerizing factor; P 3e-62
cd11286133 cd11286, ADF_cofilin_like, Cofilin, Destrin, and r 2e-60
smart00102127 smart00102, ADF, Actin depolymerisation factor/cof 8e-52
pfam00241127 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type a 4e-48
cd0001397 cd00013, ADF_gelsolin, Actin depolymerization fact 1e-16
PTZ00152122 PTZ00152, PTZ00152, cofilin/actin-depolymerizing f 9e-16
cd11285139 cd11285, ADF_Twf-N_like, N-terminal ADF domain of 3e-11
cd11283122 cd11283, ADF_GMF-beta_like, ADF-homology domain of 3e-08
cd11284132 cd11284, ADF_Twf-C_like, C-terminal ADF domain of 5e-08
>gnl|CDD|178755 PLN03216, PLN03216, actin depolymerizing factor; Provisional Back     alignment and domain information 
 Score =  186 bits (474), Expect = 3e-62
 Identities = 83/131 (63%), Positives = 107/131 (81%)

Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           M V DECK  F+E+K K+ HR+IVFKIDEK ++VTV++VG P  SY+D   SLP D+CR+
Sbjct: 10  MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRY 69

Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           AVFDFDF T +N +KSKIFFIAW+P+ASR+R+KM+YA+SKD  +R LDG+H ELQATDP+
Sbjct: 70  AVFDFDFVTVDNCRKSKIFFIAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPT 129

Query: 121 EMSLDIIKGRA 131
           EM  D+I+ RA
Sbjct: 130 EMGFDVIRDRA 140

Length = 141
>gnl|CDD|200442 cd11286, ADF_cofilin_like, Cofilin, Destrin, and related actin depolymerizing factors Back     alignment and domain information
>gnl|CDD|214516 smart00102, ADF, Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>gnl|CDD|143992 pfam00241, Cofilin_ADF, Cofilin/tropomyosin-type actin-binding protein Back     alignment and domain information
>gnl|CDD|200435 cd00013, ADF_gelsolin, Actin depolymerization factor/cofilin- and gelsolin-like domains Back     alignment and domain information
>gnl|CDD|173441 PTZ00152, PTZ00152, cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>gnl|CDD|200441 cd11285, ADF_Twf-N_like, N-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information
>gnl|CDD|200439 cd11283, ADF_GMF-beta_like, ADF-homology domain of glia maturation factor beta and related proteins Back     alignment and domain information
>gnl|CDD|200440 cd11284, ADF_Twf-C_like, C-terminal ADF domain of twinfilin and related proteins Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 132
PLN03216141 actin depolymerizing factor; Provisional 100.0
KOG1735146 consensus Actin depolymerizing factor [Cytoskeleto 100.0
PF00241127 Cofilin_ADF: Cofilin/tropomyosin-type actin-bindin 100.0
cd00013132 ADF Actin depolymerisation factor/cofilin -like do 100.0
smart00102127 ADF Actin depolymerisation factor/cofilin -like do 100.0
PTZ00152122 cofilin/actin-depolymerizing factor 1-like protein 100.0
KOG1736143 consensus Glia maturation factor beta [Extracellul 99.95
KOG1747342 consensus Protein tyrosine kinase 9/actin monomer- 99.93
KOG1747 342 consensus Protein tyrosine kinase 9/actin monomer- 99.91
KOG3655 484 consensus Drebrins and related actin binding prote 99.73
>PLN03216 actin depolymerizing factor; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.6e-45  Score=256.78  Aligned_cols=132  Identities=63%  Similarity=1.067  Sum_probs=125.3

Q ss_pred             CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070            1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |+++++|+++|++|+.++.+|||+|+|++++++|+|++++..+.+|++|.+.||+++|||++||+++++++|+.+++++|
T Consensus        10 i~v~~~c~~~f~~lk~~k~~r~iifkI~~~~~~ivv~~~~~~~~~~~d~~~~L~~~~~rY~vyd~~~~~~~g~~~~klvF   89 (141)
T PLN03216         10 MWVTDECKNSFMEMKWKKVHRYIVFKIDEKSRKVTVDKVGGPGESYDDLAASLPTDDCRYAVFDFDFVTVDNCRKSKIFF   89 (141)
T ss_pred             CeeCHHHHHHHHHHHhCCCceEEEEEEcCCCCEEEEEecCCCCCCHHHHHHhCCCCCCeEEEEEeEeccCCCCcccCEEE
Confidence            67999999999999998878999999999888999998765567899999999999999999999999989999999999


Q ss_pred             EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070           81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL  132 (132)
Q Consensus        81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~  132 (132)
                      |+|||++||+|.||+|||||++|++.|+|++.+||++|.+||+++.+.++|.
T Consensus        90 I~w~Pd~a~vk~KMlYAssK~~lk~~l~gi~~~iqatd~~el~~~~~~~~~~  141 (141)
T PLN03216         90 IAWSPEASRIRAKMLYATSKDGLRRVLDGVHYELQATDPTEMGFDVIRDRAK  141 (141)
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEECChHhcCHHHHHHHhC
Confidence            9999999999999999999999999999999999999999999999999874

>KOG1735 consensus Actin depolymerizing factor [Cytoskeleton] Back     alignment and domain information
>PF00241 Cofilin_ADF: Cofilin/tropomyosin-type actin-binding protein; InterPro: IPR002108 The actin-depolymerising factor homology (ADF-H) domain is an ~150-amino acid motif that is present in three phylogenetically distinct classes of eukaryotic actin-binding proteins [, , ]: ADF/cofilins, which include ADF, cofilin, destrin, actophorin, coactosin, depactin and glia maturation factors (GMFs) beta and gamma Back     alignment and domain information
>cd00013 ADF Actin depolymerisation factor/cofilin -like domains; present in a family of essential eukaryotic actin regulatory proteins; these proteins enhance the turnover rate of actin and interact with actin monomers as well as actin filaments Back     alignment and domain information
>smart00102 ADF Actin depolymerisation factor/cofilin -like domains Back     alignment and domain information
>PTZ00152 cofilin/actin-depolymerizing factor 1-like protein; Provisional Back     alignment and domain information
>KOG1736 consensus Glia maturation factor beta [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG1747 consensus Protein tyrosine kinase 9/actin monomer-binding protein [Extracellular structures] Back     alignment and domain information
>KOG3655 consensus Drebrins and related actin binding proteins [Cytoskeleton] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
1f7s_A139 Crystal Structure Of Adf1 From Arabidopsis Thaliana 2e-56
1ahq_A137 Recombinant Actophorin Length = 137 3e-33
1cnu_A137 Phosphorylated Actophorin From Acantamoeba Polyphag 3e-33
1cfy_A143 Yeast Cofilin, Monoclinic Crystal Form Length = 143 4e-24
2i2q_A137 Fission Yeast Cofilin Length = 137 6e-24
2l72_A139 Solution Structure And Dynamics Of Adf From Toxopla 2e-15
1q8g_A166 Nmr Structure Of Human Cofilin Length = 166 2e-14
2xfa_A148 Crystal Structure Of Plasmodium Berghei Actin Depol 2e-14
1tvj_A166 Solution Structure Of Chick Cofilin Length = 166 3e-14
1ak6_A174 Destrin, Nmr, Minimized Average Structure Length = 1e-13
2lj8_A144 Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA B 2e-12
1m4j_A142 Crystal Structure Of The N-Terminal Adf-H Domain Of 3e-10
2kvk_A144 Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISH 6e-09
2vac_A134 Structure Of N-Terminal Actin Depolymerizing Factor 5e-07
3q2b_A124 Crystal Structure Of An Actin Depolymerizing Factor 1e-05
2xf1_A124 Crystal Structure Of Plasmodium Falciparum Actin De 1e-04
>pdb|1F7S|A Chain A, Crystal Structure Of Adf1 From Arabidopsis Thaliana Length = 139 Back     alignment and structure 
Iteration: 1

 Score =  213 bits (543), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 96/131 (73%), Positives = 114/131 (87%)
Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           MAVHD+CKL+FLELKAKR HRFIV+KI+EK +QV VE+VG P  +YE+F   LPADECR+
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67
Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           A++DFDF T+EN QKSKIFFIAW PD ++VRSKM+YASSKDRFKRELDGI VELQATDP+
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127
Query: 121 EMSLDIIKGRA 131
           EM LD+ + RA
Sbjct: 128 EMDLDVFRSRA 138
>pdb|1AHQ|A Chain A, Recombinant Actophorin Length = 137 Back     alignment and structure
>pdb|1CNU|A Chain A, Phosphorylated Actophorin From Acantamoeba Polyphaga Length = 137 Back     alignment and structure
>pdb|1CFY|A Chain A, Yeast Cofilin, Monoclinic Crystal Form Length = 143 Back     alignment and structure
>pdb|2I2Q|A Chain A, Fission Yeast Cofilin Length = 137 Back     alignment and structure
>pdb|2L72|A Chain A, Solution Structure And Dynamics Of Adf From Toxoplasma Gondii (Tgadf) Length = 139 Back     alignment and structure
>pdb|1Q8G|A Chain A, Nmr Structure Of Human Cofilin Length = 166 Back     alignment and structure
>pdb|2XFA|A Chain A, Crystal Structure Of Plasmodium Berghei Actin Depolymerization Factor 2 Length = 148 Back     alignment and structure
>pdb|1TVJ|A Chain A, Solution Structure Of Chick Cofilin Length = 166 Back     alignment and structure
>pdb|1AK6|A Chain A, Destrin, Nmr, Minimized Average Structure Length = 174 Back     alignment and structure
>pdb|2LJ8|A Chain A, Solution Structure Of AdfCOFILIN FROM TRYPANOSOMA BRUCEI Length = 144 Back     alignment and structure
>pdb|1M4J|A Chain A, Crystal Structure Of The N-Terminal Adf-H Domain Of Mouse Twinfilin Isoform-1 Length = 142 Back     alignment and structure
>pdb|2KVK|A Chain A, Solution Structure Of AdfCOFILIN (LDCOF) FROM LEISHMANIA DONOVANI Length = 144 Back     alignment and structure
>pdb|2VAC|A Chain A, Structure Of N-Terminal Actin Depolymerizing Factor Homology (Adf-H) Domain Of Human Twinfilin-2 Length = 134 Back     alignment and structure
>pdb|3Q2B|A Chain A, Crystal Structure Of An Actin Depolymerizing Factor Length = 124 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query132
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 2e-48
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 2e-44
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 4e-43
2xfa_A148 Actin depolymerization factor 2; actin binding pro 2e-42
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 2e-41
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 1e-40
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 1e-39
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 2e-37
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 3e-37
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 4e-37
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 4e-35
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 4e-35
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 8e-35
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 4e-34
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 1e-32
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 1e-31
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 5e-31
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 4e-24
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 3e-21
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 2e-18
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Length = 139 Back     alignment and structure
 Score =  151 bits (382), Expect = 2e-48
 Identities = 96/131 (73%), Positives = 114/131 (87%)

Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           MAVHD+CKL+FLELKAKR HRFIV+KI+EK +QV VE+VG P  +YE+F   LPADECR+
Sbjct: 8   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 67

Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           A++DFDF T+EN QKSKIFFIAW PD ++VRSKM+YASSKDRFKRELDGI VELQATDP+
Sbjct: 68  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 127

Query: 121 EMSLDIIKGRA 131
           EM LD+ + RA
Sbjct: 128 EMDLDVFRSRA 138
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Length = 137 Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Length = 137 Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Length = 148 Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Length = 143 Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Length = 124 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Length = 166 Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Length = 174 Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Length = 139 Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Length = 134 Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Length = 151 Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Length = 154 Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Length = 142 Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Length = 135 Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Length = 164 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Length = 166 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Length = 146 Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Length = 141 Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Length = 141 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
1f7s_A139 Actin depolymerizing factor (ADF); KINK in alpha-h 100.0
1cnu_A137 Actophorin, ADF, cofilin; actin-binding protein, c 100.0
2i2q_A137 Cofilin; N-terminal serine, actin-binding protein; 100.0
1cfy_A143 Cofilin; actin-binding, cytoskeleton, actin-bindin 100.0
1vkk_A154 GMF-gamma, GLIA maturation factor gamma; 15079298, 100.0
2kvk_A144 Actin severing and dynamics regulatory protein; AD 100.0
2xfa_A148 Actin depolymerization factor 2; actin binding pro 100.0
2w0i_A135 Twinfilin-2; cytoskeleton, actin-binding, actin bi 100.0
1v6f_A151 MGMF-beta, GLIA maturation factor, beta; actin bin 100.0
1tvj_A166 Cofilin; ADF, actin binding protein, actin depolym 100.0
2kd5_A144 ADF H, actin severing and dynamics regulatory prot 100.0
2lj8_A144 Cofilin/actin depolymerizing factor, putative; pro 100.0
1m4j_A142 A6 gene product, twinfilin; mixed beta-sheet, PAIR 100.0
2d8b_A166 Twinfilin-1; cell-free protein synthesis, actin-bi 100.0
2vac_A134 Twinfilin-2; transferase, actin binding, phosphory 100.0
3daw_B164 Twinfilin-1, protein A6; actin depolymerisation, a 100.0
1ak6_A174 Destrin; actin depolymerization factor, actin-bind 100.0
1hqz_1141 ABP1P, actin-binding protein; cofilin homology dom 100.0
1x67_A146 Drebrin-like protein; cell-free protein synthesis, 100.0
2l72_A139 Tgadf, actin depolymerizing factor, putative; ADF/ 100.0
3q2b_A124 Pfadf1, cofilin/actin-depolymerizing factor homolo 100.0
1t3y_A141 Coactosin-like protein; beta sheet, protein bindin 100.0
>1f7s_A Actin depolymerizing factor (ADF); KINK in alpha-helix 3, plant protein; HET: LDA; 2.00A {Arabidopsis thaliana} SCOP: d.109.1.2 Back     alignment and structure
Probab=100.00  E-value=1.4e-43  Score=245.43  Aligned_cols=132  Identities=73%  Similarity=1.194  Sum_probs=115.6

Q ss_pred             CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070            1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |++++||+++|++|+.++.+|||+|+|++++++|+++++|++..+|++|.+.||+++|||++||+++++.+|+.++|++|
T Consensus         8 i~v~~e~~~af~~~~~~~~~~~ii~~i~~~~~~i~v~~~g~~~~~~~el~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf   87 (139)
T 1f7s_A            8 MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRYAIYDFDFVTAENCQKSKIFF   87 (139)
T ss_dssp             CEECHHHHHHHHHHHHHCCCSEEEEEEETTTTEEEEEEECCSSCCHHHHHTTSCTTSCEEEEEEEEEECTTSCEEEEEEE
T ss_pred             cEeCHHHHHHHHHHHcCCCcEEEEEEECCCCcEEEEEeecCCCCCHHHHHHhCCCCCceEEEEEeeeeccccCcccCEEE
Confidence            57899999999999997779999999999888999999887667999999999999999999999999999999999999


Q ss_pred             EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070           81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL  132 (132)
Q Consensus        81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~  132 (132)
                      |+|||++||+|.||+|||+|++|++.|+|++++|+++|++||+++.|.+|+.
T Consensus        88 I~w~P~~a~v~~KmlyAssk~~l~~~l~g~~v~i~a~d~~el~~~~i~~~~~  139 (139)
T 1f7s_A           88 IAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPTEMDLDVFRSRAN  139 (139)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHTTCTTCCEEEEECCTTC-----------
T ss_pred             EEECCCCCChhHheehHHhHHHHHHhcCCeEEEEEECChHHCCHHHHHHhhC
Confidence            9999999999999999999999999999999999999999999999999873
>1cnu_A Actophorin, ADF, cofilin; actin-binding protein, contractIle; 2.25A {Acanthamoeba polyphaga} SCOP: d.109.1.2 PDB: 1ahq_A Back     alignment and structure
>2i2q_A Cofilin; N-terminal serine, actin-binding protein; HET: LDA; 1.72A {Schizosaccharomyces pombe} Back     alignment and structure
>1cfy_A Cofilin; actin-binding, cytoskeleton, actin-binding protein; 2.30A {Saccharomyces cerevisiae} SCOP: d.109.1.2 PDB: 1cof_A 1qpv_A Back     alignment and structure
>1vkk_A GMF-gamma, GLIA maturation factor gamma; 15079298, structural GEN JCSG, protein structure initiative, PSI, joint center for S genomics; 1.35A {Mus musculus} SCOP: d.109.1.2 PDB: 1wfs_A 3l50_A Back     alignment and structure
>2kvk_A Actin severing and dynamics regulatory protein; ADF/cofilin, hormone; NMR {Leishmania donovani} Back     alignment and structure
>2xfa_A Actin depolymerization factor 2; actin binding protein, protein binding; 2.10A {Plasmodium berghei} Back     alignment and structure
>2w0i_A Twinfilin-2; cytoskeleton, actin-binding, actin binding, cofilin-like, phosphoprotein, phosphorylation, transferase, protein tyros kinase-9; 1.8A {Homo sapiens} Back     alignment and structure
>1v6f_A MGMF-beta, GLIA maturation factor, beta; actin binding protein, cytoskeleton, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>1tvj_A Cofilin; ADF, actin binding protein, actin depolymerizing factor, actin-binding protein; NMR {Gallus gallus} Back     alignment and structure
>2lj8_A Cofilin/actin depolymerizing factor, putative; protein binding; NMR {Trypanosoma brucei} Back     alignment and structure
>1m4j_A A6 gene product, twinfilin; mixed beta-sheet, PAIR of alpha-helices, structural protein; 1.60A {Mus musculus} SCOP: d.109.1.2 Back     alignment and structure
>2d8b_A Twinfilin-1; cell-free protein synthesis, actin-binding protein, developmental regulation, cellular remodeling, cytoskeleton, morphology; NMR {Mus musculus} Back     alignment and structure
>2vac_A Twinfilin-2; transferase, actin binding, phosphorylation, cofilin-like, cytoskeleton, actin-binding, protein tyrosine kinase-9; 1.70A {Homo sapiens} Back     alignment and structure
>3daw_B Twinfilin-1, protein A6; actin depolymerisation, actin binding proteins, cytoskeleton, structural protein/contractIle protein complex; HET: ATP; 2.55A {Mus musculus} PDB: 2hd7_A Back     alignment and structure
>1ak6_A Destrin; actin depolymerization factor, actin-binding protein; NMR {Homo sapiens} SCOP: d.109.1.2 PDB: 1ak7_A 1q8g_A 1q8x_A 3j0s_M Back     alignment and structure
>1hqz_1 ABP1P, actin-binding protein; cofilin homology domain, NEW YORK SGX researc for structural genomics, NYSGXRC, structural genomics, PSI; 2.10A {Saccharomyces cerevisiae} SCOP: d.109.1.2 Back     alignment and structure
>1x67_A Drebrin-like protein; cell-free protein synthesis, actin-binding protein, SH3P7, MABP1, T-cell lymphocyte signaling and regulation; NMR {Homo sapiens} Back     alignment and structure
>2l72_A Tgadf, actin depolymerizing factor, putative; ADF/cofilin, actin binding, protein binding; NMR {Toxoplasma gondii} Back     alignment and structure
>3q2b_A Pfadf1, cofilin/actin-depolymerizing factor homolog 1; actin regulator, actin-binding protein; HET: TAR; 1.60A {Plasmodium falciparum} PDB: 2xf1_A Back     alignment and structure
>1t3y_A Coactosin-like protein; beta sheet, protein binding; 1.15A {Homo sapiens} SCOP: d.109.1.2 PDB: 1t2l_A 1t3x_A 1vfq_A 1tmw_A 1wnj_A 1udm_A 1wm4_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 132
d1f7sa_124 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 4e-49
d1cnua_134 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 1e-44
d1cfya_133 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 3e-40
d1ak7a_174 d.109.1.2 (A:) Destrin {Human and pig (Homo sapien 7e-39
d1vkka_137 d.109.1.2 (A:) Glia maturation factor gamma, GMF-g 5e-37
d1q8ga_166 d.109.1.2 (A:) Cofilin (actin depolymerizing facto 3e-35
d1m4ja_133 d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 2e-30
d1t3ya1130 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 ( 6e-27
d1hqz1_139 d.109.1.2 (1:) Cofilin-like domain of actin-bindin 4e-23
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Length = 124 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]

 Score =  151 bits (382), Expect = 4e-49
 Identities = 91/121 (75%), Positives = 107/121 (88%)

Query: 1   MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRH 60
           MAVHD+CKL+FLELKAKR HRFIV+KI+EK +QV VE+VG P  +YE+F   LPADECR+
Sbjct: 4   MAVHDDCKLRFLELKAKRTHRFIVYKIEEKQKQVVVEKVGQPIQTYEEFAACLPADECRY 63

Query: 61  AVFDFDFTTSENVQKSKIFFIAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPS 120
           A++DFDF T+EN QKSKIFFIAW PD ++VRSKM+YASSKDRFKRELDGI VELQATDP+
Sbjct: 64  AIYDFDFVTAENCQKSKIFFIAWCPDIAKVRSKMIYASSKDRFKRELDGIQVELQATDPT 123

Query: 121 E 121
           E
Sbjct: 124 E 124
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Length = 134 Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 133 Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Length = 174 Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 137 Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Length = 166 Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 133 Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Length = 130 Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 139 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query132
d1cnua_134 Cofilin (actin depolymerizing factor, ADF) {Acanth 100.0
d1f7sa_124 Cofilin (actin depolymerizing factor, ADF) {Plant 100.0
d1cfya_133 Cofilin (actin depolymerizing factor, ADF) {Baker' 100.0
d1vkka_137 Glia maturation factor gamma, GMF-gamma {Mouse (Mu 100.0
d1ak7a_174 Destrin {Human and pig (Homo sapiens) and (Sus scr 100.0
d1q8ga_166 Cofilin (actin depolymerizing factor, ADF) {Human 100.0
d1m4ja_133 Adf-H domain of twinfilin isoform-1 {Mouse (Mus mu 100.0
d1t3ya1130 Coactosin-like protein Cotl1 (Clp) {Human (Homo sa 100.0
d1hqz1_139 Cofilin-like domain of actin-binding protein abp1p 100.0
>d1cnua_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Acanthamoeba castellanii, actophorin [TaxId: 5755]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: Gelsolin-like
superfamily: Actin depolymerizing proteins
family: Cofilin-like
domain: Cofilin (actin depolymerizing factor, ADF)
species: Acanthamoeba castellanii, actophorin [TaxId: 5755]

Probab=100.00  E-value=2.5e-43  Score=241.18  Aligned_cols=131  Identities=48%  Similarity=0.862  Sum_probs=123.9

Q ss_pred             CccCHHHHHHHHHHhhcCCcEEEEEEEeCCCcEEEEeecCCCCCChHHHhhcCCCCCceeEEEeeeeecCCCceeecEEE
Q 040070            1 MAVHDECKLKFLELKAKRNHRFIVFKIDEKIQQVTVERVGSPQASYEDFTKSLPADECRHAVFDFDFTTSENVQKSKIFF   80 (132)
Q Consensus         1 i~vs~e~~~a~~~lk~~~~~~~ii~~i~~~~~~i~v~~~~~~~~~~~~~~~~L~~~~~rY~~~~~~~~~~~~~~~~k~vf   80 (132)
                      |.|++||+++|++||.+++++||+|+|++++++|+++.++.++.+|++|++.||+++|||++|++++++ +++.++|++|
T Consensus         2 i~v~~e~~~a~~~lk~~~~~~~vi~~I~~~~~~i~v~~~~~~~~~~~e~~~~l~~~~~ry~~~~~~~~~-~~~~~~k~vf   80 (134)
T d1cnua_           2 IAVSDDCVQKFNELKLGHQHRYVTFKMNASNTEVVVEHVGGPNATYEDFKSQLPERDCRYAIFDYEFQV-DGGQRNKITF   80 (134)
T ss_dssp             CEECHHHHHHHHHHHHHCCCSEEEEEECTTSSEEEEEEECCTTCCHHHHHTTSCTTSCEEEEEEEEEEE-TTEEEEEEEE
T ss_pred             ceeCHHHHHHHHHHhcCCCeEEEEEEEeCCCeEEEEEecCCCCCCHHHHHHhCCCCCceEEEEEeeecC-CCCCceeEEE
Confidence            679999999999999988899999999999899999988877889999999999999999999999986 4567899999


Q ss_pred             EEEcCCCCChhhhhHhHhhHHHHHhhcCCeeEEEEEcCCCCCCHHHHhhhhC
Q 040070           81 IAWAPDASRVRSKMVYASSKDRFKRELDGIHVELQATDPSEMSLDIIKGRAL  132 (132)
Q Consensus        81 I~w~P~~a~vk~KMlyassk~~l~~~l~g~~~~i~~~d~~dl~~~~i~~~~~  132 (132)
                      |+|||++||+|.||+|||++++|++.|+|++..++++|++||+++.|.+++.
T Consensus        81 I~w~P~~a~~k~Km~yassk~~l~~~l~gi~~~i~~~d~~dL~~~~i~~kl~  132 (134)
T d1cnua_          81 ILWAPDSAPIKSKMMYTSTKDSIKKKLVGIQVEVQATDAAEISEDAVSERAK  132 (134)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHHHSTTCCEEEEECSTTTTSHHHHHHHHT
T ss_pred             EEECCCCCChhheEEeeccHHHHhhhccCceEEEEeCChHHCCHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999874
>d1f7sa_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Plant (Arabidopsis thaliana), ADF1 [TaxId: 3702]} Back     information, alignment and structure
>d1cfya_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vkka_ d.109.1.2 (A:) Glia maturation factor gamma, GMF-gamma {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1ak7a_ d.109.1.2 (A:) Destrin {Human and pig (Homo sapiens) and (Sus scrofa) [TaxId: 9606]} Back     information, alignment and structure
>d1q8ga_ d.109.1.2 (A:) Cofilin (actin depolymerizing factor, ADF) {Human (Homo sapiens), non-muscle isoform [TaxId: 9606]} Back     information, alignment and structure
>d1m4ja_ d.109.1.2 (A:) Adf-H domain of twinfilin isoform-1 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1t3ya1 d.109.1.2 (A:2-131) Coactosin-like protein Cotl1 (Clp) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1hqz1_ d.109.1.2 (1:) Cofilin-like domain of actin-binding protein abp1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure