Citrus Sinensis ID: 040072

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350----

MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLDLNETPSTYGDDDDGETSPS

cccccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHcccccccccccHHHHHHHHHHcccccccccHHHHcccHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHccccccHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccEEcccHHHHHHHHHcccccHHHHHHHHccccHHHHHHHHHccccccccHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHcccccccccccccccccccccc

cccHcccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHcHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccHHHHHHccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHccHHHHHHHHHHHHcccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccc

mkglfkpkpktpVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVlfgsdqsepnadACEQLTREFFKEDTLRLLIASLpklamgprrdaTHVVANLQRQRVDTKLIACTYLEANFDIMDTLILgyedgdvalTYGAIARECIRHQSVARYVLESEHMKKFFsflqipnfdiaSDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDsnkniqfeSFHVFKLFVanqnkppeIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATldlnetpstygddddgetsps

mkglfkpkpktpvelvKLTRELLLYanrtaetrekkreekMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASlpklamgprrDATHvvanlqrqrvdtKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGdilldrsnSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIAtldlnetpstygddddgetsps

MKGLFKPKPKTPVELVKLTRELLLYANrtaetrekkreekmselsklllemrTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLDLNETPSTYGDDDDGETSPS

*************ELVKLTRELLLYA*********************LLEMRTVLF***********CEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLDL******************

MKGL***KPKTPVELVKLTRELLL*******************LSKLLLEMRTVLFG*D**EPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIRE************************

MKGLFKPKPKTPVELVKLTRELLLYANRTAE***********ELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLDLNETPS*************

*******KPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLD*******************

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		354	2.2.26 [Sep-21-2011]
Q9FGK3		343	Putative MO25-like protei	yes	no	0.946	0.976	0.668	1e-134
Q9M0M4		343	Putative MO25-like protei	no	no	0.954	0.985	0.651	1e-131
Q9ZQ77		348	MO25-like protein At2g034	no	no	0.949	0.965	0.55	1e-110
O18211		338	MO25-like protein 2 OS=Ca	yes	no	0.940	0.985	0.446	2e-71
Q9H9S4		337	Calcium-binding protein 3	yes	no	0.920	0.967	0.415	7e-70
Q9DB16		337	Calcium-binding protein 3	yes	no	0.920	0.967	0.409	5e-69
Q06138		341	Calcium-binding protein 3	no	no	0.926	0.961	0.413	2e-66
Q9Y376		341	Calcium-binding protein 3	no	no	0.926	0.961	0.413	2e-66
Q29RI6		341	Calcium-binding protein 3	no	no	0.926	0.961	0.413	2e-66
Q9P7Q8		329	Mo25-like protein OS=Schi	yes	no	0.926	0.996	0.405	2e-64

>sp\|Q9FGK3\|MO25N_ARATH Putative MO25-like protein At5g47540 OS=Arabidopsis thaliana GN=At5g47540 PE=2 SV=1	Back alignment and function desciption

 Score =  478 bits (1230), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 226/338 (66%), Positives = 290/338 (85%), Gaps = 3/338 (0%)

Query: 1   MKGLFKPKPKTPVELVKLTRELLLYANRTA---ETREKKREEKMSELSKLLLEMRTVLFG 57
           MKGLFK KP+TP +LV+ TR+LLL+++R+    + R+ KR+EKM+ELS+ + +M+++L+G
Sbjct: 1   MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query: 58  SDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIA 117
           + ++EP A+AC QLT+EFFKEDTLRLLI  LPKL +  R+DAT VVANLQRQ+V+++LIA
Sbjct: 61  NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query: 118 CTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIP 177
             YLEAN D+MD LI G+E+ D+AL YGA+ RECIRHQ VA+YVLES+H+KKFF ++Q+P
Sbjct: 121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query: 178 NFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGD 237
           NFDIA+DA ATFKELLTRHKSTVAEFL+KN DWFF +YNS+LLESS+YIT+R A+KLLGD
Sbjct: 181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query: 238 ILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVL 297
           ILLDRSNSAVM KYVSS DN+RILMNLLR+S+K+IQ E+FHVFKLF ANQNKP +I+++L
Sbjct: 241 ILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNIL 300

Query: 298 IANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLD 335
           +ANRSKLLR  +D   D+ +E+FEADK  V+REIA L+
Sbjct: 301 VANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALE 338

Arabidopsis thaliana (taxid: 3702)

>sp\|Q9M0M4\|MO25M_ARATH Putative MO25-like protein At4g17270 OS=Arabidopsis thaliana GN=At4g17270 PE=2 SV=1	Back alignment and function description

>sp\|Q9ZQ77\|MO25L_ARATH MO25-like protein At2g03410 OS=Arabidopsis thaliana GN=At2g03410 PE=2 SV=1	Back alignment and function description

>sp\|O18211\|MO25M_CAEEL MO25-like protein 2 OS=Caenorhabditis elegans GN=mop-25.2 PE=3 SV=1	Back alignment and function description

>sp\|Q9H9S4\|CB39L_HUMAN Calcium-binding protein 39-like OS=Homo sapiens GN=CAB39L PE=1 SV=3	Back alignment and function description

>sp\|Q9DB16\|CB39L_MOUSE Calcium-binding protein 39-like OS=Mus musculus GN=Cab39l PE=1 SV=3	Back alignment and function description

>sp\|Q06138\|CAB39_MOUSE Calcium-binding protein 39 OS=Mus musculus GN=Cab39 PE=1 SV=2	Back alignment and function description

>sp\|Q9Y376\|CAB39_HUMAN Calcium-binding protein 39 OS=Homo sapiens GN=CAB39 PE=1 SV=1	Back alignment and function description

>sp\|Q29RI6\|CAB39_BOVIN Calcium-binding protein 39 OS=Bos taurus GN=CAB39 PE=2 SV=1	Back alignment and function description

>sp\|Q9P7Q8\|PMO25_SCHPO Mo25-like protein OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=pmo25 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		354
224131740		335	predicted protein [Populus trichocarpa]	0.946	1.0	0.758	1e-150
224068859		334	predicted protein [Populus trichocarpa]	0.943	1.0	0.751	1e-148
255582431		351	Calcium-binding protein, putative [Ricin	0.954	0.962	0.727	1e-147
356499489		353	PREDICTED: putative MO25-like protein At	0.974	0.977	0.710	1e-146
225469268		340	PREDICTED: putative MO25-like protein At	0.960	1.0	0.708	1e-144
356553456		353	PREDICTED: putative MO25-like protein At	0.974	0.977	0.693	1e-142
225447616		347	PREDICTED: putative MO25-like protein At	0.946	0.965	0.707	1e-139
449443544		340	PREDICTED: putative MO25-like protein At	0.946	0.985	0.693	1e-138
255581605		445	Calcium-binding protein, putative [Ricin	0.946	0.752	0.683	1e-136
255576274		341	Calcium-binding protein, putative [Ricin	0.943	0.979	0.695	1e-136

>gi\|224131740\|ref\|XP_002321166.1\| predicted protein [Populus trichocarpa] gi\|222861939\|gb\|EEE99481.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 254/335 (75%), Positives = 293/335 (87%)

Query: 1   MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQ 60
           MKGLFKPKP+TP+ELV  TR+LL++ ++  ETRE+KREEKMSELSK +LEMR VLFG+ Q
Sbjct: 1   MKGLFKPKPRTPMELVLQTRDLLIFLDQNTETRERKREEKMSELSKQILEMRIVLFGNGQ 60

Query: 61  SEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTY 120
           +EPN DAC  L REFFK DT RLL+  LPKL +G R++ATHV+A LQRQRV  +LIA  Y
Sbjct: 61  AEPNPDACAHLAREFFKHDTFRLLVVCLPKLDLGARQNATHVLAILQRQRVGGRLIASEY 120

Query: 121 LEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFD 180
           LE N D+MD L+ GYEDGD+ALTYGAI+RECIRHQ VARYVL SE+MKKFF+++QIPNFD
Sbjct: 121 LENNLDLMDVLLPGYEDGDIALTYGAISRECIRHQIVARYVLGSEYMKKFFTYIQIPNFD 180

Query: 181 IASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILL 240
           IASDAQ+TFKELLTRH+STVAEFLS NYDWFFQ YNSQLL+S SYIT+RHAVKLLGD+LL
Sbjct: 181 IASDAQSTFKELLTRHRSTVAEFLSANYDWFFQGYNSQLLQSPSYITRRHAVKLLGDMLL 240

Query: 241 DRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIAN 300
           DRSNSAVMV+YVSSL+NMRILMNL RDSNK IQ ++FHVFKLFVANQ KPPEIISVL+ N
Sbjct: 241 DRSNSAVMVRYVSSLENMRILMNLFRDSNKTIQLDTFHVFKLFVANQKKPPEIISVLVTN 300

Query: 301 RSKLLRFFSDFNIDRANEQFEADKLLVIREIATLD 335
           RSKLLRF  DF+IDR +EQFEADK  VI+EIATL+
Sbjct: 301 RSKLLRFLGDFSIDREDEQFEADKAQVIKEIATLE 335

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224068859\|ref\|XP_002302843.1\| predicted protein [Populus trichocarpa] gi\|222844569\|gb\|EEE82116.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|255582431\|ref\|XP_002532003.1\| Calcium-binding protein, putative [Ricinus communis] gi\|223528334\|gb\|EEF30376.1\| Calcium-binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|356499489\|ref\|XP_003518572.1\| PREDICTED: putative MO25-like protein At5g47540-like [Glycine max]	Back alignment and taxonomy information

>gi\|225469268\|ref\|XP_002267661.1\| PREDICTED: putative MO25-like protein At5g47540 [Vitis vinifera] gi\|302141642\|emb\|CBI18773.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|356553456\|ref\|XP_003545072.1\| PREDICTED: putative MO25-like protein At5g47540-like [Glycine max]	Back alignment and taxonomy information

>gi\|225447616\|ref\|XP_002270949.1\| PREDICTED: putative MO25-like protein At5g47540-like [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449443544\|ref\|XP_004139537.1\| PREDICTED: putative MO25-like protein At5g47540-like [Cucumis sativus]	Back alignment and taxonomy information

>gi\|255581605\|ref\|XP_002531607.1\| Calcium-binding protein, putative [Ricinus communis] gi\|223528774\|gb\|EEF30782.1\| Calcium-binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

>gi\|255576274\|ref\|XP_002529030.1\| Calcium-binding protein, putative [Ricinus communis] gi\|223531510\|gb\|EEF33341.1\| Calcium-binding protein, putative [Ricinus communis]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		354
TAIR\|locus:2168958		343	AT5G47540 [Arabidopsis thalian	0.946	0.976	0.636	7.6e-112
TAIR\|locus:2130774		343	AT4G17270 [Arabidopsis thalian	0.954	0.985	0.615	3.4e-109
TAIR\|locus:2063830		348	AT2G03410 [Arabidopsis thalian	0.949	0.965	0.532	1.2e-95
WB\|WBGene00013140		338	mop-25.2 [Caenorhabditis elega	0.940	0.985	0.422	3.1e-67
TAIR\|locus:2144990		345	AT5G18940 [Arabidopsis thalian	0.929	0.953	0.408	4.1e-65
ZFIN\|ZDB-GENE-040625-158		341	cab39 "calcium binding protein	0.805	0.835	0.447	1.1e-64
ZFIN\|ZDB-GENE-040426-2897		343	cab39l1 "calcium binding prote	0.929	0.959	0.401	1.8e-64
ZFIN\|ZDB-GENE-041114-204		334	cab39l "calcium binding protei	0.920	0.976	0.400	2.3e-64
WB\|WBGene00019827		636	mop-25.1 [Caenorhabditis elega	0.844	0.470	0.422	3.7e-64
UNIPROTKB\|Q29RI6		341	CAB39 "Calcium-binding protein	0.790	0.821	0.436	1.6e-63

TAIR\|locus:2168958 AT5G47540 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1104 (393.7 bits), Expect = 7.6e-112, P = 7.6e-112
 Identities = 215/338 (63%), Positives = 270/338 (79%)

Query:     1 MKGLFKPKPKTPVELVKLTRELLLYANXXXXX---XXXXXXXXXXXXXXXXXXXXTVLFG 57
             MKGLFK KP+TP +LV+ TR+LLL+++                            ++L+G
Sbjct:     1 MKGLFKSKPRTPADLVRQTRDLLLFSDRSTSLPDLRDSKRDEKMAELSRNIRDMKSILYG 60

Query:    58 SDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIA 117
             + ++EP A+AC QLT+EFFKEDTLRLLI  LPKL +  R+DAT VVANLQRQ+V+++LIA
Sbjct:    61 NSEAEPVAEACAQLTQEFFKEDTLRLLITCLPKLNLETRKDATQVVANLQRQQVNSRLIA 120

Query:   118 CTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIP 177
               YLEAN D+MD LI G+E+ D+AL YGA+ RECIRHQ VA+YVLES+H+KKFF ++Q+P
Sbjct:   121 SDYLEANIDLMDVLIEGFENTDMALHYGAMFRECIRHQIVAKYVLESDHVKKFFDYIQLP 180

Query:   178 NFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGD 237
             NFDIA+DA ATFKELLTRHKSTVAEFL+KN DWFF +YNS+LLESS+YIT+R A+KLLGD
Sbjct:   181 NFDIAADAAATFKELLTRHKSTVAEFLTKNEDWFFADYNSKLLESSNYITRRQAIKLLGD 240

Query:   238 ILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVL 297
             ILLDRSNSAVM KYVSS DN+RILMNLLR+S+K+IQ E+FHVFKLF ANQNKP +I+++L
Sbjct:   241 ILLDRSNSAVMTKYVSSRDNLRILMNLLRESSKSIQIEAFHVFKLFAANQNKPADIVNIL 300

Query:   298 IANRSKLLRFFSDFNIDRANEQFEADKLLVIREIATLD 335
             +ANRSKLLR  +D   D+ +E+FEADK  V+REIA L+
Sbjct:   301 VANRSKLLRLLADLKPDKEDERFEADKSQVLREIAALE 338

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR\|locus:2130774 AT4G17270 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

TAIR\|locus:2063830 AT2G03410 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

WB\|WBGene00013140 mop-25.2 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

TAIR\|locus:2144990 AT5G18940 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040625-158 cab39 "calcium binding protein 39" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-040426-2897 cab39l1 "calcium binding protein 39, like 1" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

ZFIN\|ZDB-GENE-041114-204 cab39l "calcium binding protein 39-like" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

WB\|WBGene00019827 mop-25.1 [Caenorhabditis elegans (taxid:6239)]	Back alignment and assigned GO terms

UNIPROTKB\|Q29RI6 CAB39 "Calcium-binding protein 39" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9FGK3	MO25N_ARATH	No assigned EC number	0.6686	0.9463	0.9766	yes	no
Q9P7Q8	PMO25_SCHPO	No assigned EC number	0.4059	0.9265	0.9969	yes	no
O18211	MO25M_CAEEL	No assigned EC number	0.4464	0.9406	0.9852	yes	no
Q9DB16	CB39L_MOUSE	No assigned EC number	0.4096	0.9209	0.9673	yes	no
Q9H9S4	CB39L_HUMAN	No assigned EC number	0.4156	0.9209	0.9673	yes	no
P91891	MO25_DROME	No assigned EC number	0.4119	0.9237	0.9646	yes	no
O60032	HYMA_EMENI	No assigned EC number	0.3370	0.9011	0.8307	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		354
pfam08569		334	pfam08569, Mo25, Mo25-like	1e-128

>gnl\|CDD\|219909 pfam08569, Mo25, Mo25-like	Back alignment and domain information

 Score =  370 bits (951), Expect = e-128
 Identities = 151/336 (44%), Positives = 222/336 (66%), Gaps = 6/336 (1%)

Query: 1   MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQ 60
           M  LFK  PKTP +LV+  ++ L    +         E+   E+SK L +++ +L G   
Sbjct: 1   MPFLFKKSPKTPSDLVRSLKDQL---LKLDSLSSDNAEKAQEEVSKNLSQLKEILVGDTD 57

Query: 61  SEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACT- 119
           +EP  +   QL +E + ED L LLI +L KL    R+D   + +N+ R+ +D        
Sbjct: 58  AEPTQEQIAQLAQEMYSEDLLYLLIDNLHKLDFETRKDVALIFSNILRRSIDNNSRPTVD 117

Query: 120 YLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNF 179
           YL A+ +I+  L+ GYE  ++ALT G + RECI+H+++A+ +L S    KFF ++Q+  F
Sbjct: 118 YLVAHPEILSLLLKGYETSEIALTCGDMLRECIKHEALAKIILYSPQFWKFFKYVQLSTF 177

Query: 180 DIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL 239
           +IA+DA +TFK+LLT HK  VAEFL  NYD FF  +N +LL+S++Y+TKR ++KLLG++L
Sbjct: 178 EIATDAFSTFKDLLTTHKKLVAEFLLNNYDRFFSMFN-KLLQSTNYVTKRQSLKLLGELL 236

Query: 240 LDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIA 299
           LDR+NS VM KY+SS +N++++MNLLRD +KNIQFE+FHVFK+FVAN NK   I  +L+ 
Sbjct: 237 LDRANSKVMTKYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKSKPIQDILVK 296

Query: 300 NRSKLLRFFSDFNIDRA-NEQFEADKLLVIREIATL 334
           NR KLL F  DF+ DR  +EQF  +K  +I++I +L
Sbjct: 297 NRDKLLEFLEDFSTDRTDDEQFLDEKEFIIKQIESL 332

Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site cell division in a cell cycle dependent manner. Length = 334

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		354
PF08569		335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	100.0
KOG1566		342	consensus Conserved protein Mo25 [Function unknown	100.0
KOG1566		342	consensus Conserved protein Mo25 [Function unknown	91.04
cd00020		120	ARM Armadillo/beta-catenin-like repeats. An approx	83.06
PF08064		107	UME: UME (NUC010) domain; InterPro: IPR012993 This	81.1

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis	Back alignment and domain information

Probab=100.00  E-value=1.1e-126  Score=934.87  Aligned_cols=332  Identities=54%  Similarity=0.888  Sum_probs=293.9

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcH
Q 040072            1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDT   80 (354)
Q Consensus         1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dl   80 (354)
                      |+||||++||||+|+||+++|+|.+|+ +  ..++++++..|||+|+|++||+||+|++|++|++|+|+|||+|+|++|+
T Consensus         1 M~FlF~k~~KtP~ElVr~l~e~L~~L~-~--~~~~~~~k~~eeisK~L~~mK~IL~G~~e~ep~~e~v~qLa~Ei~~~dl   77 (335)
T PF08569_consen    1 MSFLFKKKPKTPAELVRSLREALEKLD-S--KSDKKREKAQEEISKYLQQMKEILYGDGEPEPNPEQVAQLAQEIYRSDL   77 (335)
T ss_dssp             -----------HHHHHHHHHHHHHHHH-S--S-HHHHHHHHHHHHHHHHHHHHHHHS-SS----HHHHHHHHHHHHHHTH
T ss_pred             CCCCcCCCCCCHHHHHHHHHHHHHHhc-c--ccCcchhhHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhCH
Confidence            999999999999999999999999997 2  2456677778999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCc-chhHHhhhc-hhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHH
Q 040072           81 LRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKL-IACTYLEAN-FDIMDTLILGYEDGDVALTYGAIARECIRHQSVA  158 (354)
Q Consensus        81 l~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~-p~v~Yl~~~-peil~~L~~gY~~~dial~~G~mLRecik~e~la  158 (354)
                      +..||.+|++||||+|||+++||++++|+++++++ |+|+||++| |||+++|+.||++||+|++||.|||||+|||++|
T Consensus        78 l~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dial~~g~mlRec~k~e~l~  157 (335)
T PF08569_consen   78 LYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIALNCGDMLRECIKHESLA  157 (335)
T ss_dssp             HHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTHHHHHHHHHHHTTSHHHH
T ss_pred             HHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCccccchHHHHHHHHHhhHHHH
Confidence            99999999999999999999999999999999999 999999999 9999999999999999999999999999999999


Q ss_pred             HHHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHH
Q 040072          159 RYVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDI  238 (354)
Q Consensus       159 ~~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgel  238 (354)
                      ++||++++||+||+|++.++||||||||+||+++||+||++||+||.+|||+||+.|| +||+|+|||||||||||||||
T Consensus       158 ~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~-~Ll~s~NYvtkrqslkLL~el  236 (335)
T PF08569_consen  158 KIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYN-KLLESSNYVTKRQSLKLLGEL  236 (335)
T ss_dssp             HHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHCT-SSHHHHHHHHHHHHHH
T ss_pred             HHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH-HHccCCCeEeehhhHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999998 999999999999999999999


Q ss_pred             hcccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-cc
Q 040072          239 LLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-AN  317 (354)
Q Consensus       239 Lldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~D  317 (354)
                      |+||+|++||+|||+|++|||+||+||+|+||+||+||||||||||||||||+||++||.+||+|||+||.+|++|+ +|
T Consensus       237 lldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~Nr~kLl~fl~~f~~~~~~D  316 (335)
T PF08569_consen  237 LLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIKNREKLLRFLKDFHTDRTDD  316 (335)
T ss_dssp             HHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHHTHHHHHHHHHTTTTT--S-
T ss_pred             HHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHHHHHHHHHHHHhCCCCCCcc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999 99


Q ss_pred             cccHHHHHHHHHHHhcCCC
Q 040072          318 EQFEADKLLVIREIATLDL  336 (354)
Q Consensus       318 eqF~dEK~~lI~~I~~L~~  336 (354)
                      +||.|||++||++|++|||
T Consensus       317 ~qf~~EK~~li~~i~~L~~  335 (335)
T PF08569_consen  317 EQFEDEKAYLIKQIESLPP  335 (335)
T ss_dssp             CHHHHHHHHHHHHHHT---
T ss_pred             ccHHHHHHHHHHHHHhCCC
Confidence            9999999999999999986

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]	Back alignment and domain information

>KOG1566 consensus Conserved protein Mo25 [Function unknown]	Back alignment and domain information

>cd00020 ARM Armadillo/beta-catenin-like repeats	Back alignment and domain information

>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 []	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		354
3zhp_A		340	Human Mst3 (stk24) In Complex With Mo25beta Length		1e-65
3gni_A		341	Structure Of Strad And Mo25 Length = 341		1e-62
1upk_A		341	Crystal Structure Of Mo25 In Complex With A C-Termi		4e-56

>pdb|3ZHP|A Chain A, Human Mst3 (stk24) In Complex With Mo25beta Length = 340

Back alignment and structure

Iteration: 1

Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/282 (43%), Positives = 190/282 (67%), Gaps = 2/282 (0%) Query: 54 VLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDT 113 +L G+++ EP +A QL +E + L LIA L + ++D T + N+ R+++ T Sbjct: 55 ILCGTNEKEPPTEAVAQLAQELYSSGLLVTLIADLQLIDFEGKKDVTQIFNNILRRQIGT 114 Query: 114 KLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSF 173 + Y+ A+ I+ L+ GYE +AL G + RECIRH+ +A+ +L S + FF + Sbjct: 115 RSPTVEYISAHPHILFMLLKGYEAPQIALRCGIMLRECIRHEPLAKIILFSNQFRDFFKY 174 Query: 174 LQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVK 233 +++ FDIASDA ATFK+LLTRHK VA+FL +NYD F++Y +LL+S +Y+TKR ++K Sbjct: 175 VELSTFDIASDAFATFKDLLTRHKVLVADFLEQNYDTIFEDY-EKLLQSENYVTKRQSLK 233 Query: 234 LLGDILLDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEI 293 LLG+++LDR N A+M KY+S +N++++MNLLRD + NIQFE+FHVFK+FVA+ +K I Sbjct: 234 LLGELILDRHNFAIMTKYISKPENLKLMMNLLRDKSPNIQFEAFHVFKVFVASPHKTQPI 293 Query: 294 ISVLIANRSKLLRFFSDFNIDRA-NEQFEADKLLVIREIATL 334 + +L+ N+ KL+ F S F +R +EQF +K +I++I L Sbjct: 294 VEILLKNQPKLIEFLSSFQKERTDDEQFADEKNYLIKQIRDL 335

PyMOL of 3zhp

>pdb|3GNI|A Chain A, Structure Of Strad And Mo25 Length = 341

Back alignment and structure

>pdb|1UPK|A Chain A, Crystal Structure Of Mo25 In Complex With A C-Terminal Peptide Of Strad Length = 341

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		354
1upk_A		341	MO25 protein; transferase, armadillo; HET: MSE; 1.	1e-135
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-08

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A* Length = 341	Back alignment and structure

 Score =  386 bits (994), Expect = e-135
 Identities = 138/335 (41%), Positives = 215/335 (64%), Gaps = 3/335 (0%)

Query: 1   MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQ 60
           M   F    K+P ++VK  +E +    +  +  +KK E+   E+SK L+ M+ +L+G+++
Sbjct: 1   MPFPFGKSHKSPADIVKNLKESMAVLEK-QDISDKKAEKATEEVSKNLVAMKEILYGTNE 59

Query: 61  SEPNADACEQLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTY 120
            EP  +A  QL +E +    L  L+A L  +    ++D   +  N+ R+++ T+     Y
Sbjct: 60  KEPQTEAVAQLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEY 119

Query: 121 LEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFD 180
           +    +I+  L+ GYE  ++AL  G + RECIRH+ +A+ +L SE    FF ++++  FD
Sbjct: 120 ICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFD 179

Query: 181 IASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILL 240
           IASDA ATFK+LLTRHK   AEFL ++YD FF EY  +LL S +Y+TKR ++KLLG++LL
Sbjct: 180 IASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLL 238

Query: 241 DRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIAN 300
           DR N  +M KY+S  +N++++MNLLRD ++NIQFE+FHVFK+FVAN NK   I+ +L+ N
Sbjct: 239 DRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKN 298

Query: 301 RSKLLRFFSDFNIDRAN-EQFEADKLLVIREIATL 334
           ++KL+ F S F  DR   EQF  +K  ++++I  L
Sbjct: 299 QAKLIEFLSKFQNDRTEDEQFNDEKTYLVKQIRDL 333

PyMOL of 1upk

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		354
1upk_A		341	MO25 protein; transferase, armadillo; HET: MSE; 1.	100.0
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.58
4hxt_A		252	De novo protein OR329; structural genomics, PSI-bi	96.4
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	96.15
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	94.99
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	94.46
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	93.84
4db8_A		252	Armadillo-repeat protein; solenoid repeat, de novo	93.2
4db6_A		210	Armadillo repeat protein; solenoid repeat, armadil	93.1
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	91.36
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	91.33
1wa5_B		530	Importin alpha subunit; nuclear transport/complex,	90.26
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	90.16
4b8j_A		528	Importin subunit alpha-1A; transport protein, nucl	89.87
1xqr_A		296	HSPBP1 protein; armadillo repeat, superhelical twi	89.51
2jdq_A		450	Importin alpha-1 subunit; transport, PB2 subunit,	88.71
4hat_C		1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	85.74
2bpt_A		861	Importin beta-1 subunit; nuclear transport, nucleo	84.83
2z6g_A		780	B-catenin; FULL-length, beta-catenin, cell adhesio	83.66
1ibr_B		462	P95, importin beta-1 subunit, nuclear factor; smal	83.57
1jdh_A		529	Beta-catenin; beta-catenin, protein-protein comple	82.4
3now_A		810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	82.4
3tpo_A		529	Importin subunit alpha-2; nuclear import, protein	82.23
4fdd_A		852	Transportin-1; heat repeats, karyopherin, nuclear	82.16

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*	Back alignment and structure

Probab=100.00  E-value=1.2e-131  Score=965.95  Aligned_cols=334  Identities=41%  Similarity=0.738  Sum_probs=308.8

Q ss_pred             CCCCCCCCCCChHHHHHHHHHHHHHhhccccchHhHHHHHH-HHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhc
Q 040072            1 MKGLFKPKPKTPVELVKLTRELLLYANRTAETREKKREEKM-SELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKED   79 (354)
Q Consensus         1 M~~lFk~~~ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~-~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~d   79 (354)
                      |+  ||++||||+|+||+++|+|.+|+..+  ++++.++|. +||+|+|++||.||||++|++|+||+|+|||+|+|++|
T Consensus         3 m~--F~~~~ktP~elVr~l~d~l~~l~~~~--~~~~~~~k~~ee~sK~l~~mK~iL~G~~e~ep~~e~~~qL~~ei~~~d   78 (341)
T 1upk_A            3 FP--FGKSHKSPADIVKNLKESMAVLEKQD--ISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSG   78 (341)
T ss_dssp             ---------CCHHHHHHHHHHHHHHHHC-----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHS
T ss_pred             CC--CCCCCCCHHHHHHHHHHHHHHHhccc--cccchhhHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhC
Confidence            66  99999999999999999999999643  233443444 89999999999999999999999999999999999999


Q ss_pred             HHHHHHHhCCCCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHH
Q 040072           80 TLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVAR  159 (354)
Q Consensus        80 ll~~Li~~l~~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~  159 (354)
                      +|++||.+||+||||+|||+++||++++|+++|+++|+|+||++||||+++|++||+++|+|++||+|||||+|||.+|+
T Consensus        79 ll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe~~diAl~~G~mLRecir~e~la~  158 (341)
T 1upk_A           79 LLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAK  158 (341)
T ss_dssp             HHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHH
T ss_pred             HHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhccchhHhHHHHHHHHHHHhHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcchhHHHhhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHh
Q 040072          160 YVLESEHMKKFFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDIL  239 (354)
Q Consensus       160 ~iL~~~~f~~fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelL  239 (354)
                      +||++++||+||+|++.|+||||||||+||||+||+||++||+||++||||||++|| +||+|+||||||||||||||||
T Consensus       159 ~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~-~Ll~S~NYVTkRQSlKLLgelL  237 (341)
T 1upk_A          159 IILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELL  237 (341)
T ss_dssp             HHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHH-HHhcCCcchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999 8999999999999999999999


Q ss_pred             cccccHHHHHHHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-ccc
Q 040072          240 LDRSNSAVMVKYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-ANE  318 (354)
Q Consensus       240 ldr~N~~vM~~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~De  318 (354)
                      +||+|++||++||+|++|||+||+||+|+|||||+|||||||||||||+||+||++||.+||+|||+||.+|++|+ +|+
T Consensus       238 ldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~~eDe  317 (341)
T 1upk_A          238 LDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDE  317 (341)
T ss_dssp             HSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCS
T ss_pred             hCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhCCCCCcchh
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999999999 999


Q ss_pred             ccHHHHHHHHHHHhcCCCCCC
Q 040072          319 QFEADKLLVIREIATLDLNET  339 (354)
Q Consensus       319 qF~dEK~~lI~~I~~L~~~~~  339 (354)
                      ||.|||+|||++|++||++.+
T Consensus       318 qF~dEK~~lI~~I~~L~~~~~  338 (341)
T 1upk_A          318 QFNDEKTYLVKQIRDLKRPAQ  338 (341)
T ss_dssp             HHHHHHHHHHHHHHTCCCCCC
T ss_pred             hHHHHHHHHHHHHHhCCCCCC
Confidence            999999999999999986553

PyMOL of 1upk

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}	Back alignment and structure

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A	Back alignment and structure

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*	Back alignment and structure

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A	Back alignment and structure

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B	Back alignment and structure

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A	Back alignment and structure

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}	Back alignment and structure

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A	Back alignment and structure

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A	Back alignment and structure

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}	Back alignment and structure

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B	Back alignment and structure

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		354
d1upka_		330	a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens)	1e-149

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]} Length = 330	Back information, alignment and structure


class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  421 bits (1084), Expect = e-149
 Identities = 136/326 (41%), Positives = 213/326 (65%), Gaps = 3/326 (0%)

Query: 10  KTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACE 69
           K+P ++VK  +E +    +  +  +KK E+   E+SK L+ M+ +L+G+++ EP  +A  
Sbjct: 1   KSPADIVKNLKESMAVLEKQ-DISDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVA 59

Query: 70  QLTREFFKEDTLRLLIASLPKLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMD 129
           QL +E +    L  L+A L  +    ++D   +  N+ R+++ T+     Y+    +I+ 
Sbjct: 60  QLAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILF 119

Query: 130 TLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKKFFSFLQIPNFDIASDAQATF 189
            L+ GYE  ++AL  G + RECIRH+ +A+ +L SE    FF ++++  FDIASDA ATF
Sbjct: 120 MLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATF 179

Query: 190 KELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMV 249
           K+LLTRHK   AEFL ++YD FF EY  +LL S +Y+TKR ++KLLG++LLDR N  +M 
Sbjct: 180 KDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT 238

Query: 250 KYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFS 309
           KY+S  +N++++MNLLRD ++NIQFE+FHVFK+FVAN NK   I+ +L+ N++KL+ F S
Sbjct: 239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLS 298

Query: 310 DFNIDRAN-EQFEADKLLVIREIATL 334
            F  DR   EQF  +K  ++++I  L
Sbjct: 299 KFQNDRTEDEQFNDEKTYLVKQIRDL 324

PyMOL of d1upka_

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		354
d1upka_		330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	100.0
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	95.72
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	95.71
d1wa5b_		503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	94.9
d1q1sc_		434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	93.96
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	93.78
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	89.55
d1jdha_		529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	87.62
d1xqra1		264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	86.44

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.2e-129  Score=943.18  Aligned_cols=328  Identities=41%  Similarity=0.745  Sum_probs=312.8

Q ss_pred             CChHHHHHHHHHHHHHhhccccchHhHHHHHHHHHHHHHHHHHhhhccCCCCCCChHHHHHHHHHHHhhcHHHHHHHhCC
Q 040072           10 KTPVELVKLTRELLLYANRTAETREKKREEKMSELSKLLLEMRTVLFGSDQSEPNADACEQLTREFFKEDTLRLLIASLP   89 (354)
Q Consensus        10 ktP~elVr~l~e~l~~l~~~~~~~~~K~~~k~~eisK~L~~mK~il~G~~e~ep~~e~~~qLa~ei~~~dll~~Li~~l~   89 (354)
                      |||+|+||+++|+|.+|+..+. +++|+++++|||+|+|++||.||||++|+||+||+|+||++|+|++|+|++||.+||
T Consensus         1 ktP~elVr~~~d~l~~l~~~~~-~~~k~ek~~ee~~K~l~~mK~iL~G~~e~ep~~e~~~qL~~e~~~~d~l~~Li~~L~   79 (330)
T d1upka_           1 KSPADIVKNLKESMAVLEKQDI-SDKKAEKATEEVSKNLVAMKEILYGTNEKEPQTEAVAQLAQELYNSGLLSTLVADLQ   79 (330)
T ss_dssp             CCHHHHHHHHHHHHHHHHC----CTHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHSHHHHHHHTGG
T ss_pred             CCHHHHHHHHHHHHHHHhcCCC-cchhHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHhChHHHHHHhCC
Confidence            7999999999999999997643 567888788999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCcchhHHHHHHHHhhcccCCCcchhHHhhhchhHHHHHHhhcCCchhhhhHhHHHHHHHhHHHHHHHHhcchhHHH
Q 040072           90 KLAMGPRRDATHVVANLQRQRVDTKLIACTYLEANFDIMDTLILGYEDGDVALTYGAIARECIRHQSVARYVLESEHMKK  169 (354)
Q Consensus        90 ~L~fE~RKdv~~If~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY~~~dial~~G~mLRecik~e~la~~iL~~~~f~~  169 (354)
                      +||||+|||+++||++++|+++|+++|+|+||++||||+++|++||++||+|++||.|||||+|||++|++||++++||+
T Consensus        80 ~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye~~eiAl~~G~mLREcik~e~lak~iL~s~~f~~  159 (330)
T d1upka_          80 LIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYESPEIALNCGIMLRECIRHEPLAKIILWSEQFYD  159 (330)
T ss_dssp             GSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGGSTTTHHHHHHHHHHHHTSHHHHHHHHHSGGGGH
T ss_pred             CCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcCCcchhhhhhHHHHHHHhhHHHHHHHHccHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhhhccCCCchhhhhHHHHHHHHHhcChhHHHHHHHhhHHHHHHHHHHhhccCCCcchhhhhHHHHHHHhcccccHHHHH
Q 040072          170 FFSFLQIPNFDIASDAQATFKELLTRHKSTVAEFLSKNYDWFFQEYNSQLLESSSYITKRHAVKLLGDILLDRSNSAVMV  249 (354)
Q Consensus       170 fF~yv~~~~FdiasDAf~Tfkellt~Hk~lvaefl~~Nyd~Ff~~yn~~Ll~s~NYVtkRQSLKLLgelLldr~N~~vM~  249 (354)
                      ||+|+++|+||||||||+||||+||+||++||+||++||||||.+|| +||+|+||||||||||||||||+||+|++||+
T Consensus       160 fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~-~LL~s~NYVtrRqSlKLLgelLldr~N~~vm~  238 (330)
T d1upka_         160 FFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYE-KLLHSENYVTKRQSLKLLGELLLDRHNFTIMT  238 (330)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHH-HHTTCSSHHHHHHHHHHHHHHHHSGGGHHHHH
T ss_pred             HHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHH-HHhcCCchHHHHHHHHHHHHHHhhhhHHHHHH
Confidence            99999999999999999999999999999999999999999999999 89999999999999999999999999999999


Q ss_pred             HHhcChhhHHHHHHHhccCCcCcceecceeeeeeeeCCCCChHHHHHHHHhHHHHHHHhhcCCCCC-cccccHHHHHHHH
Q 040072          250 KYVSSLDNMRILMNLLRDSNKNIQFESFHVFKLFVANQNKPPEIISVLIANRSKLLRFFSDFNIDR-ANEQFEADKLLVI  328 (354)
Q Consensus       250 ~Yis~~~NLkliM~LL~d~sk~Iq~EAFhvFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f~~d~-~DeqF~dEK~~lI  328 (354)
                      |||+|++|||+||+||+|+||+||+||||||||||||||||+||++||.+||+||++||.+|++|+ +|+||.+||+|||
T Consensus       239 ~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f~~d~~~DeqF~~EK~~lI  318 (330)
T d1upka_         239 KYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKFQNDRTEDEQFNDEKTYLV  318 (330)
T ss_dssp             HHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHTTTTC-CCSHHHHHHHHHH
T ss_pred             HHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhCCCCCCchhhHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999999998 9999999999999


Q ss_pred             HHHhcCCCCCC
Q 040072          329 REIATLDLNET  339 (354)
Q Consensus       329 ~~I~~L~~~~~  339 (354)
                      ++|++||++..
T Consensus       319 ~~I~~L~~~~~  329 (330)
T d1upka_         319 KQIRDLKRPAQ  329 (330)
T ss_dssp             HHHHTCCCCCC
T ss_pred             HHHHhCCCCCC
Confidence            99999987653

PyMOL of d1upka_

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure