Citrus Sinensis ID: 040075

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250----
Protein Sequence
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Secondary Structure (PSIPRED)
cccccccHHccccccccccccccccccccHHHHHHHHcccccEEEEEEcccccccccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccEEccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEEEEEcccccEEEEEcccccHHHHHHHHHHHcccccHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcccccccccccccccccccccccccccccccccccEEEEccccccccccccccccccEEEEEc
Coil and Loop (DISEMBL)
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGkltefcsesTSIEEIIRRYQAAkgvripagvsnhdsEAIYNELGRMRKETHNLELSLrrytgdidlnsvklEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQQAAMVSKFEEhgqvldqfpfsgeaqpssvlelaiphyqpfrlqptqpnlqdfglhfptfgiLYILF
Flexible Loop (DISEMBL)
mgrgkieiariesrtnrqvtfskrrggllkkareLSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKgvripagvsnhdSEAIYNELGRMRKETHNLELSlrrytgdidlnsVKLEeltqlehqlecsvkkvrvrkMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Low Complexity Region (SEG)
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKleeltqlehqleCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEqqqqqqAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Disordered region (IsUnstruct)
*************************GGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILR*******************************************************************VLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYIL*
Disordered Region (DISOPRED)
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKG*************AIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN**********************************************PHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Disordered Region (DISEMBL)
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM**************KFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Disordered Region (DISPRO)
*****IEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWE**QQQ********************SGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKxxxxxxxxxxxxxxxxxxxxxxxxIFSLLKDNNNQMAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFGILYILF
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	254	2.2.26 [Sep-21-2011]
Q9ATE5	268	MADS-box protein FBP24 OS	N/A	no	0.933	0.884	0.452	8e-55
Q8RVL4	247	MADS-box protein defh21 O	N/A	no	0.921	0.947	0.514	2e-52
Q6H711	260	MADS-box transcription fa	yes	no	0.925	0.903	0.475	4e-52
Q8VWM8	259	MADS-box protein ZMM17 OS	N/A	no	0.897	0.880	0.470	4e-51
Q9XGJ4	237	MADS-box protein GGM13 OS	N/A	no	0.870	0.932	0.485	1e-49
Q8RYD9	252	Protein TRANSPARENT TESTA	yes	no	0.909	0.916	0.482	6e-49
Q9LLA7	210	MADS-box protein AeAP3-2	N/A	no	0.799	0.966	0.451	9e-40
Q655V4	221	MADS-box transcription fa	no	no	0.641	0.737	0.482	1e-34
Q40702	209	MADS-box transcription fa	no	no	0.811	0.985	0.379	2e-34
Q03378	215	Floral homeotic protein G	N/A	no	0.807	0.953	0.372	2e-34

>sp|Q9ATE5|FBP24_PETHY MADS-box protein FBP24 OS=Petunia hybrida GN=FBP24 PE=1 SV=1

 Score =  213 bits (543), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 173/274 (63%), Gaps = 37/274 (13%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIE+ RIE++T+RQVTFSKRR GLLKK  ELSVLCDA+IGLIIFS  GKL E+CS+
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             S+ +II RY    G  +P      +   +Y+E+ +MR++T NL+LSL+RY GD DL+ 
Sbjct: 64  PHSMSQIISRYLQTTGASLPV---EDNRVQLYDEVAKMRRDTLNLQLSLQRYKGD-DLSL 119

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
            + EEL +LE QLE ++ K+R RK+E+++QQ +NL + EKMLE+EN  ++  L   NNQM
Sbjct: 120 AQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM--NNQM 177

Query: 181 AWEQQQQQQAAM--------------VSKFEEHGQ--VLDQFPFSGEA-QPSS------- 216
                +Q+ AAM              +++    G+  +L  F F G+  QPS+       
Sbjct: 178 Y----KQESAAMDHEDHHHHHEHQQAITELNLLGEQPLLSHFTFFGDQEQPSTSTVNHFA 233

Query: 217 VLELAIP---HYQPFRLQPTQPNLQDFGLHFPTF 247
            + L  P      P+RLQP+ PNLQD  +H P++
Sbjct: 234 SISLTSPPANSISPYRLQPSHPNLQDSHVHGPSY 267

Probable transcription factor.
Petunia hybrida (taxid: 4102)

>sp|Q8RVL4|DEF21_ANTMA MADS-box protein defh21 OS=Antirrhinum majus GN=DEFH21 PE=2 SV=1

 Score =  206 bits (523), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 127/247 (51%), Positives = 169/247 (68%), Gaps = 13/247 (5%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIE+ RIE+ T+RQVTFSKRR GL+KK  ELSVLCDA+IGLI+FS  GKLTE+C+ 
Sbjct: 1   MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60

Query: 61  STSIEEIIRRYQAAKGVRIP-----AGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGD 115
             S+++II RY  AKG+ +P     AG  + D++ +  EL RM++ET NL+L+L+RY GD
Sbjct: 61  PFSMKQIIDRYVKAKGI-LPEMENRAG-PHADNDQVIKELTRMKEETLNLQLNLQRYKGD 118

Query: 116 IDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175
            DL++V+ EELT+LE  L+ S+ KVR RK+E+L +Q +NL R E MLE+EN++++  L  
Sbjct: 119 -DLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMS 177

Query: 176 N--NNQMAWEQQQQQQAAMVSKFEEHGQ-VLDQFPFSGEAQPSSVLELAIPHYQPFRLQP 232
           N    Q   E   QQQ     K  E  Q ++++FPF GE      L L   H   +RLQP
Sbjct: 178 NQIQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDTH--SYRLQP 235

Query: 233 TQPNLQD 239
           TQPNLQD
Sbjct: 236 TQPNLQD 242

Probable transcription factor.

Antirrhinum majus (taxid: 4151)

>sp|Q6H711|MAD29_ORYSJ MADS-box transcription factor 29 OS=Oryza sativa subsp. japonica GN=MADS29 PE=2 SV=1

 Score =  204 bits (520), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 118/248 (47%), Positives = 156/248 (62%), Gaps = 13/248 (5%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ TNRQVTFSKRRGGLLKKA EL+VLCDA +G++IFS TGK+ E+CS 
Sbjct: 1   MGRGKIEIKRIENATNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           + S+ E+I  YQ            NHD + I+ E+ RMR E   L+  +RR+TGD DL++
Sbjct: 61  TCSLRELIEHYQTVTNTHFEE--INHDQQ-IFVEMTRMRNEMEKLDGGIRRFTGD-DLSN 116

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           + L ++  LE QLE SV KVR RK ++L QQ DNL RKE +LE++N  +  ++ +N++Q 
Sbjct: 117 LTLADINDLEQQLEFSVTKVRARKHQLLNQQLDNLRRKEHILEDQNSFLCRMINENHHQA 176

Query: 181 AWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHY-------QPFRLQPT 233
           A      +  AMV        +     + GE   S+ L+L  P +         FRLQPT
Sbjct: 177 AVGGGDVK--AMVEMAPVLSMLTAAPAYYGEESSSTALQLTPPLHAVDAAAAAGFRLQPT 234

Query: 234 QPNLQDFG 241
           QPNLQD G
Sbjct: 235 QPNLQDPG 242

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8VWM8|M17_MAIZE MADS-box protein ZMM17 OS=Zea mays GN=M17 PE=2 SV=1

 Score =  201 bits (511), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 126/268 (47%), Positives = 165/268 (61%), Gaps = 40/268 (14%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ TNRQVTFSKRRGGLLKKA EL+VLCDA +G++IFS TGK+ E+CS 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRGGLLKKANELAVLCDARVGVVIFSSTGKMFEYCSP 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           + S+ E+I +YQ A          NHD + I  E+ RM+ E   LE  +RRYTGD DL+S
Sbjct: 61  ACSLRELIEQYQHATNSHFEE--INHDQQ-ILLEMTRMKNEMEKLETGIRRYTGD-DLSS 116

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           + L++++ LE QLE SV KVR RK ++L QQ DNL RKE++LE++N  ++ ++ +N    
Sbjct: 117 LTLDDVSDLEQQLEYSVSKVRARKHQLLNQQLDNLRRKEQILEDQNTFLYRMINEN---- 172

Query: 181 AWEQQQQQQAAMVSKF---EEHGQVLDQFP----------FSGEAQPS-SVLEL--AIPH 224
                  QQAA+  +    E     + Q P          + GE+  S + L+L  A P 
Sbjct: 173 -------QQAALTGEVKLGEMAPLAMLQPPPAFAHSATAYYGGESSSSGTALQLMSAAPQ 225

Query: 225 YQP----FRLQPTQPNLQD-----FGLH 243
                  FRLQPTQPNLQD      GLH
Sbjct: 226 LHADDLGFRLQPTQPNLQDPAAPCGGLH 253

Probable transcription factor.

Zea mays (taxid: 4577)

>sp|Q9XGJ4|GGM13_GNEGN MADS-box protein GGM13 OS=Gnetum gnemon GN=GGM13 PE=2 SV=1

 Score =  196 bits (498), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 118/243 (48%), Positives = 158/243 (65%), Gaps = 22/243 (9%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ TNRQVTFSKRRGGLLKKA ELSVLCDAE+GLIIFS +GKL E+ S 
Sbjct: 1   MGRGKIEIKRIENTTNRQVTFSKRRGGLLKKAHELSVLCDAELGLIIFSSSGKLFEYSSA 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           S+S+++II RYQ   G RI    + +D++ +Y E+ RM+ E   L+ ++RR  G+ DL S
Sbjct: 61  SSSMKKIIERYQKVSGARI----TEYDNQHLYCEMTRMKNENEKLQTNIRRMMGE-DLTS 115

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           + + EL  L  QLE +  +VR RK +++ QQ +NL RKE++LE++N  +  LL +     
Sbjct: 116 LTMTELHHLGQQLESASSRVRSRKNQLMLQQLENLRRKERILEDQNSHLCRLLAE----- 170

Query: 181 AWEQQQQQQAAMVSKFE---EHGQVLDQFPFSGEAQPSSVLELAIPHYQP-FRLQPTQPN 236
                  QQAA+    E   E G V    P +  A  ++   L + H+ P FRLQPTQPN
Sbjct: 171 -------QQAAVEGVQEPLLEFG-VFCPPPDNKTAAAANAGPLHLGHHLPAFRLQPTQPN 222

Query: 237 LQD 239
           LQ+
Sbjct: 223 LQE 225

Probable transcription factor.

Gnetum gnemon (taxid: 3382)

>sp|Q8RYD9|TT16_ARATH Protein TRANSPARENT TESTA 16 OS=Arabidopsis thaliana GN=TT16 PE=1 SV=1

 Score =  194 bits (493), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 122/253 (48%), Positives = 164/253 (64%), Gaps = 22/253 (8%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI +IE++T RQVTFSKRR GL+KK RELS+LCDA IGLI+FS TGKL+EFCSE
Sbjct: 1   MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
              + ++I RY    G+R+P    + D E +++E+  +R+ET NLEL LR + G  DL S
Sbjct: 61  QNRMPQLIDRYLHTNGLRLPD--HHDDQEQLHHEMELLRRETCNLELRLRPFHGH-DLAS 117

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           +   EL  LE QLE SV KVR RK E+++QQ +NL RK +MLEE+N  ++  L ++   M
Sbjct: 118 IPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAAM 177

Query: 181 AWEQQQQQQAAMVSKFEEHGQVLDQFPF--SGE---------AQPSSVLELA-IP-HYQP 227
            +     QQA + +K  E+ Q ++Q      GE          QP+SVL+LA +P    P
Sbjct: 178 EF-----QQAGIDTKPGEYQQFIEQLQCYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDP 232

Query: 228 -FRLQPTQPNLQD 239
            + LQ  QPNLQ+
Sbjct: 233 TYNLQLAQPNLQN 245

Transcription factor involved in the developmental regulation of the endothelium and in the accumulation of proanthocyanidins (PAs) or condensed tannins which give the seed its brown pigmentation after oxidation. Necessary for the normal activation of the BANYULS promoter in the endothelium body.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LLA7|AP32_ASAEU MADS-box protein AeAP3-2 (Fragment) OS=Asarum europaeum GN=AP3-2 PE=2 SV=1

 Score =  163 bits (413), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 98/217 (45%), Positives = 140/217 (64%), Gaps = 14/217 (6%)

Query: 26  GGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIPAGVSN 85
           GGLLKKAREL++LCDA++G+IIFS +GK+ EF S   S+ EII RYQ   G   P     
Sbjct: 1   GGLLKKARELAILCDAQLGVIIFSSSGKMFEFSSPPISMREIIDRYQKLSGNCAPV---- 56

Query: 86  HDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKM 145
           +D++ +Y E+ RM+ E   L+ ++R + G+ DL S+ + E+ QLE QLE SV KVR RK 
Sbjct: 57  YDNQQVYCEITRMKNEIDKLQATMRHFAGE-DLTSLTMNEMLQLEQQLEISVNKVRSRKE 115

Query: 146 EILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQQAAMVSKFEEHGQVLDQ 205
           ++L+QQ DNL RKE MLEE+N +++ +++D++   A  +Q+    +M+  F    Q    
Sbjct: 116 QLLQQQLDNLRRKENMLEEQNRELYRVIQDHH--AASMEQKMVDPSMLDHFGVFYQD--- 170

Query: 206 FPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGL 242
                +A  SS+L+L+ P   PFRLQP QPNLQD  L
Sbjct: 171 ---DHQAARSSMLQLS-PQLHPFRLQPAQPNLQDANL 203

Probable transcription factor.

Asarum europaeum (taxid: 49456)

>sp|Q655V4|MAD30_ORYSJ MADS-box transcription factor 30 OS=Oryza sativa subsp. japonica GN=MADS30 PE=2 SV=1

 Score =  146 bits (368), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 81/168 (48%), Positives = 114/168 (67%), Gaps = 5/168 (2%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MG+GKIE+ RIE  T RQVTFSKRR G LKKA EL+VLCDA++G+++FS  GKL +FCS 
Sbjct: 1   MGQGKIEMKRIEDATRRQVTFSKRRAGFLKKANELAVLCDAQVGVVVFSDKGKLFDFCSP 60

Query: 61  STSIEEIIRRYQ-AAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLN 119
              + E+  RY+   +  R+    +N D E +  E+ R+R E   LE SLRR TG+ DL+
Sbjct: 61  PVILMELFHRYEITTRNTRLQE--TNRDDEQMVMEITRLRNEIDQLEASLRRQTGE-DLS 117

Query: 120 SVK-LEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEEN 166
           SV  ++EL+QL+ QLE S+ KV  RK E++ QQ +++ R  + + E+N
Sbjct: 118 SVSTVDELSQLQLQLESSLSKVHARKDELMSQQLEDMRRMHQTVHEQN 165

Probable transcription factor.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q40702|MADS2_ORYSJ MADS-box transcription factor 2 OS=Oryza sativa subsp. japonica GN=MADS2 PE=2 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 91/240 (37%), Positives = 134/240 (55%), Gaps = 34/240 (14%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ TNRQVTFSKRR G+LKKARE+SVLCDAE+G++IFS  GKL ++CS 
Sbjct: 1   MGRGKIEIKRIENSTNRQVTFSKRRSGILKKAREISVLCDAEVGVVIFSSAGKLYDYCSP 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
            TS+  I+ +YQ   G      + +   +++  E+ R++KE  N+++ LR   G+ DLNS
Sbjct: 61  KTSLSRILEKYQTNSG----KILWDEKHKSLSAEIDRIKKENDNMQIELRHLKGE-DLNS 115

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI-FSLLKDNNNQ 179
           ++ +EL  +E  L+  +  V  + M+   +     +R +KMLE+EN+ + F L       
Sbjct: 116 LQPKELIMIEEALDNGIVNVNDKLMDHWERH----VRTDKMLEDENKLLAFKL------- 164

Query: 180 MAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQD 239
                  QQ  A+     +               P       +P    FR+QP+ PNLQ+
Sbjct: 165 ------HQQDIALSGSMRD---------LELGYHPDRDFAAQMP--ITFRVQPSHPNLQE 207

Probable transcription factor involved in the development of floral organs. B-class protein required for normal development of lodicules (whorl 2).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q03378|GLOB_ANTMA Floral homeotic protein GLOBOSA OS=Antirrhinum majus GN=GLO PE=1 SV=1

 Score =  146 bits (368), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 92/247 (37%), Positives = 139/247 (56%), Gaps = 42/247 (17%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ +NRQVT+SKRR G++KKA+E+SVLCDA + +IIF+ +GK+ EFCS 
Sbjct: 1   MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           ST++ +++  Y    G R+      H    + NE+ R++KE  ++++ LR   G+ D+ +
Sbjct: 61  STTLVDMLDHYHKLSGKRLWDPKHEH----LDNEINRVKKENDSMQIELRHLKGE-DITT 115

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKE-KMLEEENEQI-FSLLK---D 175
           +  +EL  LE  LE     ++ ++ME +R     ++RK  +M+EEEN+ + F L +   D
Sbjct: 116 LNYKELMVLEDALENGTSALKNKQMEFVR-----MMRKHNEMVEEENQSLQFKLRQMHLD 170

Query: 176 NNNQMAWEQQQQQQAAMVSKFEEHGQVLD---QFPFSGEAQPSSVLELAIPHYQPFRLQP 232
             N    E Q       V     H  + D   Q PF+                  FR+QP
Sbjct: 171 PMNDNVMESQA------VYDHHHHQNIADYEAQMPFA------------------FRVQP 206

Query: 233 TQPNLQD 239
            QPNLQ+
Sbjct: 207 MQPNLQE 213

Transcription factor involved in the genetic control of flower development. Acts in conjunction with DEFICIENS (defA).

Antirrhinum majus (taxid: 4151)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
331031302	239	hypothetical protein [Citrus clementina]	0.940	1.0	0.991	1e-131
225423656	285	PREDICTED: MADS-box protein FBP24-like [	0.944	0.842	0.609	1e-75
297737989	256	unnamed protein product [Vitis vinifera]	0.944	0.937	0.6	2e-75
224122644	246	predicted protein [Populus trichocarpa]	0.929	0.959	0.600	1e-68
224134434	246	predicted protein [Populus trichocarpa]	0.885	0.914	0.554	2e-62
359484091	236	PREDICTED: protein TRANSPARENT TESTA 16-	0.917	0.987	0.571	3e-61
255545285	233	mads box protein, putative [Ricinus comm	0.889	0.969	0.564	1e-56
27151496	268	RecName: Full=MADS-box protein FBP24; Al	0.933	0.884	0.452	5e-53
356576957	246	PREDICTED: MADS-box protein FBP24-like [	0.893	0.922	0.475	6e-52
27151486	247	RecName: Full=MADS-box protein defh21; A	0.921	0.947	0.514	9e-51

>gi|331031302|gb|AEC50090.1| hypothetical protein [Citrus clementina]

 Score =  472 bits (1215), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/240 (99%), Positives = 238/240 (99%), Gaps = 1/240 (0%)

Query: 9   ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEII 68
           ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEII
Sbjct: 1   ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEII 60

Query: 69  RRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQ 128
           RRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQ
Sbjct: 61  RRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQ 120

Query: 129 LEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQMAWEQQQQQ 188
           LEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSL KDNNNQMAWE QQQQ
Sbjct: 121 LEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLFKDNNNQMAWE-QQQQ 179

Query: 189 QAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFG 248
           QAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFG
Sbjct: 180 QAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQPFRLQPTQPNLQDFGLHFPTFG 239

Source: Citrus clementina

Species: Citrus clementina

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225423656|ref|XP_002276139.1| PREDICTED: MADS-box protein FBP24-like [Vitis vinifera]

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 153/251 (60%), Positives = 188/251 (74%), Gaps = 11/251 (4%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKI I RIE+ TNRQVTFSKRRGGL KKA ELSVLCDA+IGLIIFS TGKL+E+CS 
Sbjct: 1   MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSL 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDS-EAIYNELGRMRKETHNLELSLRRYTGDIDLN 119
            +S+E+IIRRYQ   G  I    S  D+ E ++NE+ RMR ETHNL+LSL+RYTGD DL+
Sbjct: 61  PSSMEQIIRRYQRVTGTHI----SKQDNREQLHNEITRMRNETHNLQLSLQRYTGD-DLS 115

Query: 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQ 179
           S++ ++L +LE QLE S+KKVR RK ++L+QQ DNL RK KMLE+ENEQI   +++    
Sbjct: 116 SIQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQEKQQV 175

Query: 180 MAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAI--PHYQPFRLQPTQPNL 237
            A E   QQQ  +  K  E  QV++QFPFSGE QP+SVL+LA   PH+ P+RLQPT PNL
Sbjct: 176 AAME---QQQLGIELKPVEEQQVMEQFPFSGEEQPNSVLQLATLSPHFYPYRLQPTHPNL 232

Query: 238 QDFGLHFPTFG 248
           QD  L +P FG
Sbjct: 233 QDLTLQYPGFG 243

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737989|emb|CBI27190.3| unnamed protein product [Vitis vinifera]

 Score =  288 bits (736), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 153/255 (60%), Positives = 188/255 (73%), Gaps = 15/255 (5%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKI I RIE+ TNRQVTFSKRRGGL KKA ELSVLCDA+IGLIIFS TGKL+E+CS 
Sbjct: 1   MGRGKIAIRRIENNTNRQVTFSKRRGGLFKKAHELSVLCDAQIGLIIFSSTGKLSEYCSL 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDS-----EAIYNELGRMRKETHNLELSLRRYTGD 115
            +S+E+IIRRYQ   G  I    S  D+     E ++NE+ RMR ETHNL+LSL+RYTGD
Sbjct: 61  PSSMEQIIRRYQRVTGTHI----SKQDNRVGAIEQLHNEITRMRNETHNLQLSLQRYTGD 116

Query: 116 IDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175
            DL+S++ ++L +LE QLE S+KKVR RK ++L+QQ DNL RK KMLE+ENEQI   +++
Sbjct: 117 -DLSSIQFKDLEELEQQLEHSIKKVRARKYQLLQQQIDNLQRKAKMLEDENEQICHWIQE 175

Query: 176 NNNQMAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAI--PHYQPFRLQPT 233
                A E   QQQ  +  K  E  QV++QFPFSGE QP+SVL+LA   PH+ P+RLQPT
Sbjct: 176 KQQVAAME---QQQLGIELKPVEEQQVMEQFPFSGEEQPNSVLQLATLSPHFYPYRLQPT 232

Query: 234 QPNLQDFGLHFPTFG 248
            PNLQD  L +P FG
Sbjct: 233 HPNLQDLTLQYPGFG 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224122644|ref|XP_002318890.1| predicted protein [Populus trichocarpa] gi|222859563|gb|EEE97110.1| predicted protein [Populus trichocarpa]

 Score =  265 bits (678), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 149/248 (60%), Positives = 185/248 (74%), Gaps = 12/248 (4%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKI I RIE+RT RQVTFSKRRGGL KK  ELSVLCDAEIGLIIFS  GKL EFC+E
Sbjct: 1   MGRGKIAITRIENRTARQVTFSKRRGGLFKKTHELSVLCDAEIGLIIFSSNGKLYEFCNE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           S+SI  IIRRY+ +KG+R+   + ++D E I  E  R+RKET +L+LS+R Y G+ +L+S
Sbjct: 61  SSSIPHIIRRYEISKGMRV---LESNDWEQIQKESKRIRKETDDLQLSVRCYKGE-NLSS 116

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           +  E L +LE QLECSV KVR +K+E+L+QQ DNL RKEKMLEEEN+QI   L    + +
Sbjct: 117 LHHEGLVELEKQLECSVNKVRAQKLELLQQQVDNLRRKEKMLEEENQQIQYHL----HHV 172

Query: 181 AWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQP-SSVLELA--IPHYQPFRLQPTQPNL 237
           A  +QQQ  AAMV   E+  ++L+QF FS E QP SS+L+LA   P +QP+R+QPTQPNL
Sbjct: 173 AMLEQQQAAAAMVKPMEQQ-RMLEQFQFSDEDQPISSLLQLAPLPPQFQPYRVQPTQPNL 231

Query: 238 QDFGLHFP 245
           QDF L  P
Sbjct: 232 QDFSLSIP 239

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134434|ref|XP_002321823.1| predicted protein [Populus trichocarpa] gi|222868819|gb|EEF05950.1| predicted protein [Populus trichocarpa]

 Score =  245 bits (625), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 138/249 (55%), Positives = 175/249 (70%), Gaps = 24/249 (9%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           M RGKI I RIE+RT RQVTFSKRR GL KK  ELSVLCDAEIGLI+FS  GKL+EFCSE
Sbjct: 1   MARGKIAITRIENRTARQVTFSKRRVGLFKKTHELSVLCDAEIGLIVFSSNGKLSEFCSE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
           S+SI  II+RY+ +KG+R+     ++DSE I  EL R+RKET +L+LS+R Y G+  L+S
Sbjct: 61  SSSIPHIIKRYEISKGMRVS---ESNDSEQILKELKRIRKETDDLQLSMRCYKGE-SLSS 116

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI-FSLLKDNNNQ 179
           +  E+L +LE QLECSV KVR RK E+L+QQ DNL RKEKMLE EN+QI + L++     
Sbjct: 117 LHYEDLVELEKQLECSVNKVRARKFELLQQQVDNLRRKEKMLEVENQQIQYHLVR----- 171

Query: 180 MAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQP-SSVLELA--IPHYQPFRLQPTQPN 236
             W          +   EE  ++L++F F G+ QP S++L+LA   P +QP R+QPTQPN
Sbjct: 172 -KW----------IFPLEEQQRMLEEFQFFGDEQPISNLLQLAPLPPQFQPCRVQPTQPN 220

Query: 237 LQDFGLHFP 245
           LQD  L  P
Sbjct: 221 LQDSSLSIP 229

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484091|ref|XP_002271905.2| PREDICTED: protein TRANSPARENT TESTA 16-like [Vitis vinifera]

 Score =  241 bits (614), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 140/245 (57%), Positives = 174/245 (71%), Gaps = 12/245 (4%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKI I RIE++T+RQVTFSKRR GLLKK  ELSVLCD +IGLIIFS TGK+ E+C+E
Sbjct: 1   MGRGKIAIRRIENQTSRQVTFSKRRAGLLKKTHELSVLCDVQIGLIIFSSTGKMCEYCTE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDS-EAIYNELGRMRKETHNLELSLRRYTGDIDLN 119
              +++II RYQ   G RIP     HDS E IYNEL RMRKET  L+ S+R YTG+ DL+
Sbjct: 61  PWRMDQIIERYQKVTGTRIP----EHDSREQIYNELTRMRKETSRLQRSMRGYTGE-DLS 115

Query: 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQ 179
           S+  E+L QLE QLE S  KVR RK ++L+QQ DNL RKE+MLEEEN +++  +K+N   
Sbjct: 116 SIPYEDLDQLEQQLEHSADKVRARKNQLLQQQLDNLRRKEQMLEEENSKMYHWIKENRAA 175

Query: 180 MAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELAIPHYQ--PFRLQPTQPNL 237
           + +    QQ A  V   E H Q+LDQFPF GE  P+SVL+L+  H Q  P+ LQ TQP+L
Sbjct: 176 LDY----QQAAIEVKPVEHHHQMLDQFPFFGEEGPNSVLQLSTIHPQLHPYGLQLTQPHL 231

Query: 238 QDFGL 242
           QD  +
Sbjct: 232 QDSSI 236

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545285|ref|XP_002513703.1| mads box protein, putative [Ricinus communis] gi|223547154|gb|EEF48650.1| mads box protein, putative [Ricinus communis]

 Score =  225 bits (574), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 136/241 (56%), Positives = 172/241 (71%), Gaps = 15/241 (6%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKI I RIE++T RQVTFSKRR GLLKK  ELSVLCDA+IGLIIFS TGK+ ++C+E
Sbjct: 1   MGRGKIPIKRIENQTTRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSTGKMCQYCTE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDS-EAIYNELGRMRKETHNLELSLRRYTGDIDLN 119
              +E+II RYQ   G  IP     HDS E ++ EL  +RKET  L+L++RRYTG+ D++
Sbjct: 61  PLRMEQIIERYQKITGTCIP----EHDSREQLFGELAMLRKETRRLQLNMRRYTGE-DMS 115

Query: 120 SVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQ 179
           S+  EEL +LE +LE SV KVR RK E+L+QQ DNL RKE+MLEEEN  ++  ++++   
Sbjct: 116 SIPFEELGELEQELERSVAKVRDRKNELLQQQLDNLRRKERMLEEENGNMYRWIQEHRAA 175

Query: 180 MAWEQQQQQQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELA-IP-HYQPFRLQPTQPNL 237
           + +     QQA M +K  EH QVLDQFPF GE  P+SVL+LA IP    P+ LQ  QPNL
Sbjct: 176 LEY-----QQATMEAKPVEHQQVLDQFPFCGE--PNSVLQLATIPSQIHPYHLQLAQPNL 228

Query: 238 Q 238
           Q
Sbjct: 229 Q 229

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27151496|sp|Q9ATE5.1|FBP24_PETHY RecName: Full=MADS-box protein FBP24; AltName: Full=Floral-binding protein 24 gi|13384062|gb|AAK21255.1|AF335242_1 MADS-box transcription factor FBP24 [Petunia x hybrida]

 Score =  213 bits (543), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 124/274 (45%), Positives = 173/274 (63%), Gaps = 37/274 (13%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIE+ RIE++T+RQVTFSKRR GLLKK  ELSVLCDA+IGLIIFS  GKL E+CS+
Sbjct: 4   MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             S+ +II RY    G  +P      +   +Y+E+ +MR++T NL+LSL+RY GD DL+ 
Sbjct: 64  PHSMSQIISRYLQTTGASLPV---EDNRVQLYDEVAKMRRDTLNLQLSLQRYKGD-DLSL 119

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
            + EEL +LE QLE ++ K+R RK+E+++QQ +NL + EKMLE+EN  ++  L   NNQM
Sbjct: 120 AQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM--NNQM 177

Query: 181 AWEQQQQQQAAM--------------VSKFEEHGQ--VLDQFPFSGEA-QPSS------- 216
                +Q+ AAM              +++    G+  +L  F F G+  QPS+       
Sbjct: 178 Y----KQESAAMDHEDHHHHHEHQQAITELNLLGEQPLLSHFTFFGDQEQPSTSTVNHFA 233

Query: 217 VLELAIP---HYQPFRLQPTQPNLQDFGLHFPTF 247
            + L  P      P+RLQP+ PNLQD  +H P++
Sbjct: 234 SISLTSPPANSISPYRLQPSHPNLQDSHVHGPSY 267

Source: Petunia x hybrida

Species: Petunia x hybrida

Genus: Petunia

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356576957|ref|XP_003556596.1| PREDICTED: MADS-box protein FBP24-like [Glycine max]

 Score =  209 bits (533), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 117/246 (47%), Positives = 163/246 (66%), Gaps = 19/246 (7%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIEI RIE+ T RQVTFSKRRGGLLKK +ELSVLCDA+IG+IIFS TGK+ E+C+E
Sbjct: 1   MGRGKIEIKRIENTTTRQVTFSKRRGGLLKKTKELSVLCDAKIGIIIFSSTGKMREWCTE 60

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
              +E+II +YQ +KG  I     +H  E  ++ +  +R++T  LEL ++RY G+ D+  
Sbjct: 61  PFRMEQIIEQYQISKGTPIAERGHDHPREEFFHNMAMLRQQTIRLELEIQRYLGE-DMRG 119

Query: 121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
           ++ E+LT+LE +LE SV ++R R+ E+L+QQ +NL RKE++LEEE          NN+  
Sbjct: 120 LQYEDLTKLEQELENSVARIRNRQNELLQQQMENLRRKERILEEE----------NNHFS 169

Query: 181 AWEQQQQ----QQAAMVSKFEEHGQVLDQFPFSGEAQPSSVLELA---IPHYQPFRLQPT 233
            WE  Q     Q+AA   +  +   V+D F F  E    S+L+LA   +PH+ P+ LQ  
Sbjct: 170 NWEHHQAVLEFQKAAATVEASKPMYVMDHFSFFEEQPAGSILQLASPMLPHFHPY-LQLA 228

Query: 234 QPNLQD 239
           QPN+QD
Sbjct: 229 QPNIQD 234

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|27151486|sp|Q8RVL4.1|DEF21_ANTMA RecName: Full=MADS-box protein defh21; AltName: Full=DEFICIENS homolog 21 gi|19578307|emb|CAC85225.1| putative MADS-domain transcription factor [Antirrhinum majus]

 Score =  206 bits (523), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 127/247 (51%), Positives = 169/247 (68%), Gaps = 13/247 (5%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           MGRGKIE+ RIE+ T+RQVTFSKRR GL+KK  ELSVLCDA+IGLI+FS  GKLTE+C+ 
Sbjct: 1   MGRGKIEVKRIENNTSRQVTFSKRRSGLMKKTHELSVLCDAQIGLIVFSTKGKLTEYCTP 60

Query: 61  STSIEEIIRRYQAAKGVRIP-----AGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGD 115
             S+++II RY  AKG+ +P     AG  + D++ +  EL RM++ET NL+L+L+RY GD
Sbjct: 61  PFSMKQIIDRYVKAKGI-LPEMENRAG-PHADNDQVIKELTRMKEETLNLQLNLQRYKGD 118

Query: 116 IDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175
            DL++V+ EELT+LE  L+ S+ KVR RK+E+L +Q +NL R E MLE+EN++++  L  
Sbjct: 119 -DLSTVRFEELTELEKLLDQSLNKVRARKLELLHEQMENLKRTEFMLEKENQEMYHWLMS 177

Query: 176 N--NNQMAWEQQQQQQAAMVSKFEEHGQ-VLDQFPFSGEAQPSSVLELAIPHYQPFRLQP 232
           N    Q   E   QQQ     K  E  Q ++++FPF GE      L L   H   +RLQP
Sbjct: 178 NQIQRQAEVEHHHQQQVMTELKLVEQQQPLMNEFPFFGEDLHLGTLPLLDTH--SYRLQP 235

Query: 233 TQPNLQD 239
           TQPNLQD
Sbjct: 236 TQPNLQD 242

Source: Antirrhinum majus

Species: Antirrhinum majus

Genus: Antirrhinum

Family: Plantaginaceae

Order: Lamiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	254
UNIPROTKB|Q9ATE5	268	FBP24 "MADS-box protein FBP24"	0.814	0.772	0.457	7.7e-48
TAIR|locus:2166766	252	TT16 "TRANSPARENT TESTA16" [Ar	0.925	0.932	0.449	8.1e-44
UNIPROTKB|Q03378	215	GLO "Floral homeotic protein G	0.791	0.934	0.351	4.3e-32
UNIPROTKB|Q9ZS26	197	gglo1 "MADS-box protein, GGLO1	0.653	0.842	0.367	3e-31
TAIR|locus:2149264	208	PI "PISTILLATA" [Arabidopsis t	0.641	0.783	0.410	4.8e-31
UNIPROTKB|Q0J466	249	MADS7 "MADS-box transcription	0.712	0.726	0.417	1.3e-29
UNIPROTKB|Q9ATF1	245	FBP9 "MADS-box transcription f	0.685	0.710	0.420	1.3e-29
TAIR|locus:2032372	251	SEP3 "SEPALLATA3" [Arabidopsis	0.677	0.685	0.4	4.7e-29
UNIPROTKB|Q6EU39	250	MADS6 "MADS-box transcription	0.854	0.868	0.359	7.1e-29
UNIPROTKB|Q9ZS25	210	gsqua1 "MADS-box protein, GSQU	0.712	0.861	0.377	1.2e-28

UNIPROTKB|Q9ATE5 FBP24 "MADS-box protein FBP24" [Petunia x hybrida (taxid:4102)]

 Score = 442 (160.7 bits), Expect = 7.7e-48, Sum P(2) = 7.7e-48
 Identities = 98/214 (45%), Positives = 136/214 (63%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGKIE+ RIE++T+RQVTFSKRR GLLKK  ELSVLCDA+IGLIIFS  GKL E+CS+
Sbjct:     4 MGRGKIEVKRIENKTSRQVTFSKRRAGLLKKTHELSVLCDAQIGLIIFSSKGKLFEYCSQ 63

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
               S+ +II RY    G  +P  V ++  + +Y+E+ +MR++T NL+LSL+RY GD DL+ 
Sbjct:    64 PHSMSQIISRYLQTTGASLP--VEDNRVQ-LYDEVAKMRRDTLNLQLSLQRYKGD-DLSL 119

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQM 180
              +             ++ K+R RK+E+++QQ +NL + EKMLE+EN  ++  L   NNQM
Sbjct:   120 AQYEELNELEKQLEHALNKIRARKLELMQQQMENLKKTEKMLEKENHDMYQWLM--NNQM 177

Query:   181 AWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQP 214
               +              EH Q + +    GE QP
Sbjct:   178 YKQESAAMDHEDHHHHHEHQQAITELNLLGE-QP 210

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2166766 TT16 "TRANSPARENT TESTA16" [Arabidopsis thaliana (taxid:3702)]

 Score = 462 (167.7 bits), Expect = 8.1e-44, P = 8.1e-44
 Identities = 112/249 (44%), Positives = 152/249 (61%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGKIEI +IE++T RQVTFSKRR GL+KK RELS+LCDA IGLI+FS TGKL+EFCSE
Sbjct:     1 MGRGKIEIKKIENQTARQVTFSKRRTGLIKKTRELSILCDAHIGLIVFSATGKLSEFCSE 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDS-EAIYNELGRMRKETHNLELSLRRYTGDIDLN 119
                + ++I RY    G+R+P    +HD  E +++E+  +R+ET NLEL LR + G  DL 
Sbjct:    61 QNRMPQLIDRYLHTNGLRLP---DHHDDQEQLHHEMELLRRETCNLELRLRPFHGH-DLA 116

Query:   120 SVKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNNQ 179
             S+              SV KVR RK E+++QQ +NL RK +MLEE+N  ++  L ++   
Sbjct:   117 SIPPNELDGLERQLEHSVLKVRERKNELMQQQLENLSRKRRMLEEDNNNMYRWLHEHRAA 176

Query:   180 MAWEXXXXXXA-AMVSKFEEHGQVL-----DQFPFSGEAQPSSVLELA-IP-HYQP-FRL 230
             M ++            +F E  Q        QF    + QP+SVL+LA +P    P + L
Sbjct:   177 MEFQQAGIDTKPGEYQQFIEQLQCYKPGEYQQFLEQQQQQPNSVLQLATLPSEIDPTYNL 236

Query:   231 QPTQPNLQD 239
             Q  QPNLQ+
Sbjct:   237 QLAQPNLQN 245

GO:0003677 "DNA binding" evidence=IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;IMP

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0008360 "regulation of cell shape" evidence=IMP

GO:2000029 "regulation of proanthocyanidin biosynthetic process" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0048316 "seed development" evidence=IGI;IMP

GO:0048481 "ovule development" evidence=IGI;RCA;IMP

GO:0080155 "regulation of double fertilization forming a zygote and endosperm" evidence=IGI

GO:0010048 "vernalization response" evidence=RCA

GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA

GO:0048440 "carpel development" evidence=RCA

UNIPROTKB|Q03378 GLO "Floral homeotic protein GLOBOSA" [Antirrhinum majus (taxid:4151)]

 Score = 315 (115.9 bits), Expect = 4.3e-32, Sum P(2) = 4.3e-32
 Identities = 77/219 (35%), Positives = 124/219 (56%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGKIEI RIE+ +NRQVT+SKRR G++KKA+E+SVLCDA + +IIF+ +GK+ EFCS 
Sbjct:     1 MGRGKIEIKRIENSSNRQVTYSKRRNGIMKKAKEISVLCDAHVSVIIFASSGKMHEFCSP 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             ST++ +++  Y    G R+      H  E + NE+ R++KE  ++++ LR   G+ D+ +
Sbjct:    61 STTLVDMLDHYHKLSGKRL--WDPKH--EHLDNEINRVKKENDSMQIELRHLKGE-DITT 115

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKE-KMLEEENEQI-FSLLKDNNN 178
             +                  ++ ++ME +R     ++RK  +M+EEEN+ + F L + + +
Sbjct:   116 LNYKELMVLEDALENGTSALKNKQMEFVR-----MMRKHNEMVEEENQSLQFKLRQMHLD 170

Query:   179 QMAWEXXXXXXAAMVSKFEEHGQVLD---QFPFSGEAQP 214
              M         +  V     H  + D   Q PF+   QP
Sbjct:   171 PM---NDNVMESQAVYDHHHHQNIADYEAQMPFAFRVQP 206

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ZS26 gglo1 "MADS-box protein, GGLO1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 312 (114.9 bits), Expect = 3.0e-31, Sum P(2) = 3.0e-31
 Identities = 65/177 (36%), Positives = 114/177 (64%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGKIEI RIE+ +NRQVT+SKR+ G++KKA+E++VLCDA + L+I+  +GK+ E+CS 
Sbjct:     1 MGRGKIEIKRIENTSNRQVTYSKRKNGIIKKAKEITVLCDANVSLVIYGSSGKMYEYCSP 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
              T++ +++ RYQ   G ++    + H++  + NE+ R++KE  ++++ LR   G+ D+ S
Sbjct:    61 KTNLIDMLDRYQRLSGNKL--WDAKHEN--LQNEIDRIKKENESMQIELRHLKGE-DITS 115

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRK-EKMLEEENEQIFSLLKDN 176
             +               +  +R +K EI +     ++RK E++LEEEN+ +  L++ +
Sbjct:   116 LNYEELIAYEDALENGLTNIREKKDEIPK-----IMRKHEQVLEEENKHLMYLVQQS 167

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2149264 PI "PISTILLATA" [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 4.8e-31, Sum P(2) = 4.8e-31
 Identities = 71/173 (41%), Positives = 105/173 (60%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGKIEI RIE+  NR VTFSKRR GL+KKA+E++VLCDA++ LIIF+  GK+ ++C  
Sbjct:     1 MGRGKIEIKRIENANNRVVTFSKRRNGLVKKAKEITVLCDAKVALIIFASNGKMIDYCCP 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             S  +  ++ +YQ   G ++    + H++  + NE+ R++KE  +L+L LR   G+ D+ S
Sbjct:    61 SMDLGAMLDQYQKLSGKKL--WDAKHEN--LSNEIDRIKKENDSLQLELRHLKGE-DIQS 115

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQI-FSL 172
             +               + KVR  +MEIL  +     R EKM+ EE  Q+ F L
Sbjct:   116 LNLKNLMAVEHAIEHGLDKVRDHQMEILISKR----RNEKMMAEEQRQLTFQL 164

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA

GO:0005737 "cytoplasm" evidence=IDA

UNIPROTKB|Q0J466 MADS7 "MADS-box transcription factor 7" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 79/189 (41%), Positives = 110/189 (58%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRG++E+ RIE++ NRQVTF+KRR GLLKKA ELSVLCDAE+ LIIFS  GKL EFCS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS- 59

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSE---AIYNELGRMRKETHNLELSLRRYTGDID 117
             + S+ + + +YQ          V N +SE   A  NE  +++    NL+ + R   G+ D
Sbjct:    60 TQSMTKTLEKYQKCSYAGPETAVQNRESEQLKASRNEYLKLKARVENLQRTQRNLLGE-D 118

Query:   118 LNSVKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNN 177
             L+S+              S+K VR  + + L  Q   L RKE+M+ E N  +   L+++N
Sbjct:   119 LDSLGIKELESLEKQLDSSLKHVRTTRTKHLVDQLTELQRKEQMVSEANRCLRRKLEESN 178

Query:   178 N---QMAWE 183
             +   Q  WE
Sbjct:   179 HVRGQQVWE 187

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|Q9ATF1 FBP9 "MADS-box transcription factor FBP9" [Petunia x hybrida (taxid:4102)]

 Score = 328 (120.5 bits), Expect = 1.3e-29, P = 1.3e-29
 Identities = 74/176 (42%), Positives = 109/176 (61%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRG++E+ RIE++ NRQVTF+KRR GLLKKA ELSVLCDAE+ LIIFS  GKL EFCS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEFCST 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             S S+ + + +YQ      +    S +D++  Y+E  R++     L+ S R   G+ DL S
Sbjct:    61 S-SMMKTLEKYQQCSYASLDPMQSANDTQNNYHEYLRLKARVELLQRSQRNLLGE-DLGS 118

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDN 176
             +              S+K++R +K + +  Q  +L +KE+ML E N+Q+   L+++
Sbjct:   119 LNSKELEQLEHQLDSSLKQIRSKKTQHMLDQLADLQQKEQMLAEANKQLRRKLEES 174

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2032372 SEP3 "SEPALLATA3" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 72/180 (40%), Positives = 105/180 (58%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRG++E+ RIE++ NRQVTF+KRR GLLKKA ELSVLCDAE+ LIIFS  GKL EFCS 
Sbjct:     1 MGRGRVELKRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSNRGKLYEFCS- 59

Query:    61 STSIEEIIRRYQAAK-GVRIPAGVSNHDSEAI----YNELGRMRKETHNLELSLRRYTGD 115
             S+S+   + RYQ    G   P  V + ++ A+      E  ++++    L+ + R   G+
Sbjct:    60 SSSMLRTLERYQKCNYGAPEP-NVPSREALAVELSSQQEYLKLKERYDALQRTQRNLLGE 118

Query:   116 IDLNSVKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKD 175
              DL  +              S+K++R  + + +  Q ++L  KE+ML E N+ +   L D
Sbjct:   119 -DLGPLSTKELESLERQLDSSLKQIRALRTQFMLDQLNDLQSKERMLTETNKTLRLRLAD 177

GO:0003677 "DNA binding" evidence=IEA;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=IEA;ISS;TAS

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=IEA;ISS

GO:0046983 "protein dimerization activity" evidence=IEA

GO:0001708 "cell fate specification" evidence=RCA;IMP

GO:0010093 "specification of floral organ identity" evidence=RCA;IMP

GO:0009908 "flower development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0048481 "ovule development" evidence=RCA;IMP

GO:0048833 "specification of floral organ number" evidence=IMP

GO:0048440 "carpel development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

UNIPROTKB|Q6EU39 MADS6 "MADS-box transcription factor 6" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 82/228 (35%), Positives = 123/228 (53%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRG++E+ RIE++ NRQVTFSKRR GLLKKA ELSVLCDAE+ LIIFS  GKL EF   
Sbjct:     1 MGRGRVELKRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVALIIFSSRGKLYEF--G 58

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNS 120
             S  I + + RYQ        +  +  ++++ Y+E+ +++ +   L+ + R   G+ DL  
Sbjct:    59 SAGITKTLERYQHCCYNAQDSNNALSETQSWYHEMSKLKAKFEALQRTQRHLLGE-DLGP 117

Query:   121 VKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK---DNN 177
             +             C++ + R RK +++ +Q + L RKE+ L E N Q+   L+     +
Sbjct:   118 LSVKELQQLEKQLECALSQARQRKTQLMMEQVEELRRKERQLGEINRQLKHKLEVEGSTS 177

Query:   178 NQMAWEXXXXXXAAMVSKFEEHGQVLDQFPFSGEAQPSS-VLELAIPH 224
             N  A +       A+V    E+G    Q P    A  S   L++  PH
Sbjct:   178 NYRAMQQASWAQGAVV----ENGAAYVQPPPHSAAMDSEPTLQIGYPH 221

GO:0005515 "protein binding" evidence=IPI

GO:0010022 "meristem determinacy" evidence=IMP

GO:0010093 "specification of floral organ identity" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

UNIPROTKB|Q9ZS25 gsqua1 "MADS-box protein, GSQUA1" [Gerbera hybrid cultivar (taxid:18101)]

 Score = 319 (117.4 bits), Expect = 1.2e-28, P = 1.2e-28
 Identities = 71/188 (37%), Positives = 110/188 (58%)

Query:     1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             MGRGK+++ RIE++ NRQVTFSKRRGGLLKKA E+SVLCDAE+ LI+FS  GKL E+ ++
Sbjct:     1 MGRGKVQLKRIENKINRQVTFSKRRGGLLKKAHEISVLCDAEVALIVFSAKGKLFEYSTD 60

Query:    61 STSIEEIIRRYQAAKGVRIPAGVSNHDSEAIYN-ELGRMRKETHNLELSLRRYTGDIDLN 119
             S  +E I+ RY+    +       + DS   +  E  +++     L+ +LR Y G+ D+ 
Sbjct:    61 SC-MENILDRYEQYSNIDRQHVAVDTDSPIRWTQECNKLKSRAELLQRNLRHYMGE-DIE 118

Query:   120 SVKXXXXXXXXXXXXCSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLKDNNN- 178
             S+              ++K++  +K ++L Q    L +KEK ++E+N  +   +K+    
Sbjct:   119 SLGLREIQNLEQQLDTALKRIHSKKNQLLHQSISELQKKEKAIQEQNNTLIKNIKEKEKT 178

Query:   179 --QMA-WE 183
               Q A WE
Sbjct:   179 ITQKAQWE 186

GO:0005515 "protein binding" evidence=IPI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8RVL4	DEF21_ANTMA	No assigned EC number	0.5141	0.9212	0.9473	N/A	no
Q6H711	MAD29_ORYSJ	No assigned EC number	0.4758	0.9251	0.9038	yes	no
Q8RYD9	TT16_ARATH	No assigned EC number	0.4822	0.9094	0.9166	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	254
cd00265	77	cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer fa	7e-41
cd00120	59	cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and	2e-32
smart00432	59	smart00432, MADS, MADS domain	3e-32
cd00266	83	cd00266, MADS_SRF_like, SRF-like/Type I subfamily	4e-27
pfam00319	51	pfam00319, SRF-TF, SRF-type transcription factor (	9e-21
pfam01486	100	pfam01486, K-box, K-box region	3e-17
COG5068	412	COG5068, ARG80, Regulator of arginine metabolism a	1e-08

>gnl|CDD|238165 cd00265, MADS_MEF2_like, MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score =  134 bits (341), Expect = 7e-41
 Identities = 55/77 (71%), Positives = 60/77 (77%), Gaps = 2/77 (2%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GRGKIEI RIE+ TNRQVTFSKRR GLLKKA ELSVLCDAE+ LIIFS +GKL EF   S
Sbjct: 1  GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFS--S 58

Query: 62 TSIEEIIRRYQAAKGVR 78
           S+E+II RYQ   G  
Sbjct: 59 PSMEKIIERYQKTSGSS 75

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 77

>gnl|CDD|238067 cd00120, MADS, MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

 Score =  112 bits (283), Expect = 2e-32
 Identities = 43/59 (72%), Positives = 50/59 (84%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
          GRGKIEI RIE++T+RQVTFSKRR GL KKA ELSVLCDAE+ +I+FS +GKL EF S 
Sbjct: 1  GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS 59

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 59

>gnl|CDD|197721 smart00432, MADS, MADS domain

 Score =  112 bits (282), Expect = 3e-32
 Identities = 45/58 (77%), Positives = 49/58 (84%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
          GR KIEI RIE++TNRQVTFSKRR GL KKA ELSVLCDAE+ LI+FS TGKL EF S
Sbjct: 1  GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFAS 58

Length = 59

>gnl|CDD|238166 cd00266, MADS_SRF_like, SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

 Score = 99.6 bits (249), Expect = 4e-27
 Identities = 38/70 (54%), Positives = 49/70 (70%), Gaps = 1/70 (1%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RIE++  R VTFSKRR GL KKA ELS LC AE+ +I++S +GKL  F   S
Sbjct: 1  GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSS 60

Query: 62 TSIEEIIRRY 71
            +E +I R+
Sbjct: 61 -EVEGVISRF 69

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi. Length = 83

>gnl|CDD|109379 pfam00319, SRF-TF, SRF-type transcription factor (DNA-binding and dimerisation domain)

 Score = 82.0 bits (203), Expect = 9e-21
 Identities = 36/51 (70%), Positives = 43/51 (84%)

Query: 9  ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
           RIE+++NRQVTFSKRR G+ KKA ELSVLCDAE+ +IIFS TGKL E+ S
Sbjct: 1  KRIENKSNRQVTFSKRRNGIFKKAHELSVLCDAEVAVIIFSSTGKLYEYSS 51

Length = 51

>gnl|CDD|216525 pfam01486, K-box, K-box region

 Score = 74.5 bits (184), Expect = 3e-17
 Identities = 33/87 (37%), Positives = 50/87 (57%), Gaps = 1/87 (1%)

Query: 82  GVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVR 141
            +     E +  E  +++K+  NL+   R   G+ DL S+ L+EL QLE QLE  +K +R
Sbjct: 8   DLWESKYENLQQEAAKLKKQNENLQREQRHLLGE-DLGSLSLKELQQLEQQLENGLKHIR 66

Query: 142 VRKMEILRQQTDNLLRKEKMLEEENEQ 168
            RK E+L  Q + L +KE+ L+EEN  
Sbjct: 67  SRKNELLLNQIEELQKKERELQEENRN 93

The K-box region is commonly found associated with SRF-type transcription factors see pfam00319. The K-box is a possible coiled-coil structure. Possible role in multimer formation. Length = 100

>gnl|CDD|227400 COG5068, ARG80, Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

 Score = 54.6 bits (131), Expect = 1e-08
 Identities = 26/61 (42%), Positives = 37/61 (60%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           +   KI I+ I ++T R VTFSKR+ G+ KKA ELSVL   E+ L++ S  G +  F + 
Sbjct: 81  VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTP 140

Query: 61  S 61
            
Sbjct: 141 K 141

Length = 412

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	254
KOG0014	195	consensus MADS box transcription factor [Transcrip	100.0
cd00265	77	MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-li	99.98
cd00266	83	MADS_SRF_like SRF-like/Type I subfamily of MADS (M	99.96
smart00432	59	MADS MADS domain.	99.96
cd00120	59	MADS MADS: MCM1, Agamous, Deficiens, and SRF (seru	99.95
PF00319	51	SRF-TF: SRF-type transcription factor (DNA-binding	99.92
PF01486	100	K-box: K-box region; InterPro: IPR002487 MADS gene	99.82
KOG0015	338	consensus Regulator of arginine metabolism and rel	99.75
COG5068	412	ARG80 Regulator of arginine metabolism and related	99.39
PF06005	72	DUF904: Protein of unknown function (DUF904); Inte	91.11
PHA03155	115	hypothetical protein; Provisional	81.79
PRK04098	158	sec-independent translocase; Provisional	81.37

>KOG0014 consensus MADS box transcription factor [Transcription]

Probab=100.00  E-value=6.3e-39  Score=272.57  Aligned_cols=159  Identities=45%  Similarity=0.627  Sum_probs=126.6

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccC
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIP   80 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~   80 (254)
                      |||+||+|++|+|.++|||||+|||+||||||+||||||||+||+|||||+|++|+||+++.+|..|++||.........
T Consensus         1 M~R~ki~i~~Ien~~~RqvTFsKRr~GL~KKA~ELsvLCd~eiavIifsp~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~   80 (195)
T KOG0014|consen    1 MGRGKIEIKRIENESSRQVTFSKRRNGLFKKASELSVLCDAEIAVIVFSPSGKLYEFGSSDESVDAVVDRFLNLTEPSRK   80 (195)
T ss_pred             CCCCccceeeccccchhhhhhHHHHhhHHHHHHHHHHhcCCeEEEEEECCCCCccccCCcchhHHHHHHHHHhhhhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999766699999999987665433


Q ss_pred             CCCCCcch---------------------hHHHHHhhhhhhhhHHHHh---hhcccCCCCcCCCCCH-HHHHHHHHHHHH
Q 040075           81 AGVSNHDS---------------------EAIYNELGRMRKETHNLEL---SLRRYTGDIDLNSVKL-EELTQLEHQLEC  135 (254)
Q Consensus        81 ~~~~~~~~---------------------e~l~~e~~kLkke~~~L~~---~~r~~~Ge~dL~~Ls~-~EL~~LE~~Le~  135 (254)
                      ........                     +........++...+.+..   ..+++.|+ ++.+++. .+|..++.+++.
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~l~~l~~~~~l~~~~~~l~~  159 (195)
T KOG0014|consen   81 KKRVNLESFLRNKKLTELVEEEEKEELKLQLKKSLESSLKVDPEDLELLELEQRKLTGE-DLQSLSSLNELNSLESQLES  159 (195)
T ss_pred             ccccchhhHhhhhhhhcccchhhhhhccchhhhhhhhhhhcchhhhhhhHHHHHHHhcc-ccccCCHHHHhcchhhHHHH
Confidence            21111110                     0122233344445555543   36788999 9999999 999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHH-HHHHHHH
Q 040075          136 SVKKVRVRKMEILRQQTD-NLLRKEK  160 (254)
Q Consensus       136 ~L~~VR~RK~~ll~~qi~-~lkkk~~  160 (254)
                      ++..+|..+...+..++. .++.+..
T Consensus       160 ~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (195)
T KOG0014|consen  160 SLHNSRSSKSKPLSDSNFQVLQEKEK  185 (195)
T ss_pred             hhcCCCCCCCcCCcchhhhhhcccch
Confidence            999999999888877665 3333333

>cd00265 MADS_MEF2_like MEF2 (myocyte enhancer factor 2)-like/Type II subfamily of MADS ( MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.98  E-value=1.1e-33  Score=206.64  Aligned_cols=77  Identities=71%  Similarity=1.031  Sum_probs=74.2

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCccC
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRIP   80 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~~   80 (254)
                      ||+||+|++|||..+|++||+||+.||||||.||||||||+||+|||||+|++|+|++  +++++||+||+..++.++|
T Consensus         1 gr~ki~i~~i~~~~~r~~tf~kR~~gl~kKa~Els~Lc~~~v~lvv~sp~gk~~~f~s--~s~~~vl~ry~~~~~~~~~   77 (77)
T cd00265           1 GRGKIEIKRIENSTNRQVTFSKRRNGLLKKAHELSVLCDAEVALIIFSSSGKLYEFSS--PSMEKIIERYQKTSGSSLW   77 (77)
T ss_pred             CCCcceeEEecCccHHHHHHHHhhhhhhhcceeheeccCCceeEEEEcCCCceEEecC--CCHHHHHHHHHhccccccC
Confidence            8999999999999999999999999999999999999999999999999999999998  5689999999999988776

Binds DNA and exists as hetero and homo-dimers. Differs from SRF-like/Type I subgroup mainly in position of the alpha helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>cd00266 MADS_SRF_like SRF-like/Type I subfamily of MADS (MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptional regulators

Probab=99.96  E-value=4.9e-31  Score=195.44  Aligned_cols=77  Identities=49%  Similarity=0.793  Sum_probs=72.4

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCcc
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRI   79 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~   79 (254)
                      ||+||+|++|+|..+|+|||+|||.||||||+||||||||+||+|||||+|+.++||+++. +..++++|...+....
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~KRk~gl~kKa~ELs~Lc~~~v~~iv~sp~~~~~~~~~~~~-~~~~l~~~~~~~~~~~   77 (83)
T cd00266           1 GRKKIKIKRIENKKKRAVTFSKRRQGLFKKASELSTLCGAEVAVIVYSPSGKLYVFWPSSE-VEGVISRFEVLSALER   77 (83)
T ss_pred             CCccceeEEeeccchhhhhHHHhhhhHHHHHHHHHHhhCCcEEEEEECCCCCcceecCcHH-HHHHHHHHhhcCHhhh
Confidence            8999999999999999999999999999999999999999999999999999999999644 9999999998776543

Binds DNA and exists as hetero- and homo-dimers. Differs from the MEF-like/Type II subgroup mainly in position of the alpha 2 helix responsible for the dimerization interface. Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>smart00432 MADS MADS domain

Probab=99.96  E-value=2.2e-30  Score=179.21  Aligned_cols=59  Identities=76%  Similarity=1.082  Sum_probs=58.1

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCC
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE   60 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~   60 (254)
                      ||+||+|++|+|+.+|++||+||+.||+|||+||||||||+||+|||||+|++++||+|
T Consensus         1 gR~Ki~i~~I~~~~~R~~tf~kRk~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~p   59 (59)
T smart00432        1 GRRKIEIKRIENKTNRQVTFSKRRNGLFKKAHELSVLCDAEVALIVFSPTGKLYEFASP   59 (59)
T ss_pred             CCCcceeEEeeCcchhhhhhHhhhhhHHHHHHHHhhccCCeEEEEEECCCCCeeeccCC
Confidence            89999999999999999999999999999999999999999999999999999999985

>cd00120 MADS MADS: MCM1, Agamous, Deficiens, and SRF (serum response factor) box family of eukaryotic transcriptonal regulators

Probab=99.95  E-value=1.5e-29  Score=175.17  Aligned_cols=59  Identities=73%  Similarity=1.082  Sum_probs=57.9

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCC
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE   60 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~   60 (254)
                      ||+||+|++|+|...|++||+||+.||+|||.||||||||+||+|||||+|++++||+|
T Consensus         1 gr~Ki~i~~I~~~~~R~~tf~kR~~gl~kKa~Els~Lc~~~v~~iv~sp~g~~~~~~~~   59 (59)
T cd00120           1 GRGKIEIKRIENKTSRQVTFSKRRNGLFKKASELSVLCDAEVAVIVFSPSGKLYEFWSS   59 (59)
T ss_pred             CCccceeEEeeCcchhhhhHHHHhchHHHhhhhheeccCCcEEEEEECCCCCcccccCC
Confidence            89999999999999999999999999999999999999999999999999999999984

Binds DNA and exists as hetero and homo-dimers. Composed of 2 main subgroups: SRF-like/Type I and MEF2-like (myocyte enhancer factor 2)/ Type II. These subgroups differ mainly in position of the alpha 2 helix responsible for the dimerization interface; Important in homeotic regulation in plants and in immediate-early development in animals. Also found in fungi.

>PF00319 SRF-TF: SRF-type transcription factor (DNA-binding and dimerisation domain); InterPro: IPR002100 Human serum response factor (SRF) is a ubiquitous nuclear protein important for cell proliferation and differentiation

Probab=99.92  E-value=2e-27  Score=159.36  Aligned_cols=51  Identities=57%  Similarity=0.890  Sum_probs=47.0

Q ss_pred             EEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccC
Q 040075            9 ARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS   59 (254)
Q Consensus         9 k~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s   59 (254)
                      |+|+|.+.|++||+||+.||||||.|||+||||+||+|||||+|+++.|+|
T Consensus         1 K~I~n~~~R~~tf~KRk~gL~KKa~ELs~LC~~~v~~iv~~~~g~~~~f~s   51 (51)
T PF00319_consen    1 KRIENKSRRKVTFSKRKKGLFKKASELSTLCGVDVALIVFSPDGKLYTFPS   51 (51)
T ss_dssp             S--SSHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEEETTSEEEEEES
T ss_pred             CCccchhHhHhHHHHHHhhhhhccceeeeecCCeEEEEEECCCCCEEEecC
Confidence            689999999999999999999999999999999999999999999999986

SRF function is essential for transcriptional regulation of numerous growth-factor-inducible genes, such as c-fos oncogene and muscle-specific actin genes. A core domain of around 90 amino acids is sufficient for the activities of DNA-binding, dimerisation and interaction with accessory factors. Within the core is a DNA-binding region, designated the MADS box [], that is highly similar to many eukaryotic regulatory proteins: among these are MCM1, the regulator of cell type-specific genes in fission yeast; DSRF, a Drosophila trachea development factor; the MEF2 family of myocyte-specific enhancer factors; and the Agamous and Deficiens families of plant homeotic proteins. In SRF, the MADS box has been shown to be involved in DNA-binding and dimerisation []. Proteins belonging to the MADS family function as dimers, the primary DNA-binding element of which is an anti-parallel coiled coil of two amphipathic alpha-helices, one from each subunit. The DNA wraps around the coiled coil allowing the basic N-termini of the helices to fit into the DNA major groove. The chain extending from the helix N-termini reaches over the DNA backbone and penetrates into the minor groove. A 4-stranded, anti-parallel beta-sheet packs against the coiled-coil face opposite the DNA and is the central element of the dimerisation interface. The MADS-box domain is commonly found associated with K-box region see IPR002487 from INTERPRO ; GO: 0003677 DNA binding, 0046983 protein dimerization activity; PDB: 1MNM_B 1N6J_A 1TQE_S 3MU6_D 3P57_I 1EGW_A 1C7U_B 3KOV_A 1HBX_A 1K6O_C ....

>PF01486 K-box: K-box region; InterPro: IPR002487 MADS genes in plants encode key developmental regulators of vegetative and reproductive development

Probab=99.82  E-value=1.1e-19  Score=139.20  Aligned_cols=99  Identities=40%  Similarity=0.637  Sum_probs=95.2

Q ss_pred             hhhhcCCccCCCCCCcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075           71 YQAAKGVRIPAGVSNHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKMEILRQ  150 (254)
Q Consensus        71 Y~~~~~~~~~~~~~~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~  150 (254)
                      |++.++.+.|    +.+++.+..++.+|+.+++.|+..+|+++|+ ||++|+++||..||++|+.+|.+||+||.++|.+
T Consensus         1 Y~~~~~~~~~----~~~~e~~~~e~~~L~~~~~~L~~~~R~~~Ge-dL~~Ls~~eL~~LE~~Le~aL~~VR~rK~~~l~~   75 (100)
T PF01486_consen    1 YQKQSGTDLW----DSQHEELQQEIAKLRKENESLQKELRHLMGE-DLESLSLKELQQLEQQLESALKRVRSRKDQLLME   75 (100)
T ss_pred             CCcccCCCCC----HHHHHHHHHHHHHHHHHHHHHHHHHhccccc-cccccchHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            7778888888    8889999999999999999999999999999 9999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q 040075          151 QTDNLLRKEKMLEEENEQIFSLLK  174 (254)
Q Consensus       151 qi~~lkkk~~~l~een~~L~~~l~  174 (254)
                      +|+.+++|++.+.++|..|+.++.
T Consensus        76 ~i~~l~~ke~~l~~en~~L~~~~~   99 (100)
T PF01486_consen   76 QIEELKKKERELEEENNQLRQKIE   99 (100)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999874

The majority of the plant MADS proteins share a stereotypical MIKC structure. It comprises (from N- to C-terminal) an N-terminal domain, which is, however, present only in a minority of proteins; a MADS domain (see PDOC00302 from PROSITEDOC, IPR002100 from INTERPRO), which is the major determinant of DNA-binding but which also performs dimerisation and accessory factor binding functions; a weakly conserved intervening (I) domain, which constitutes a key molecular determinant for the selective formation of DNA-binding dimers; a keratin-like (K-box) domain, which promotes protein dimerisation; and a C-terminal (C) domain, which is involved in transcriptional activation or in the formation of ternary or quaternary protein complexes. The 80-amino acid K-box domain was originally identified as a region with low but significant similarity to a region of keratin, which is part of the coiled-coil sequence constituting the central rod-shaped domain of keratin [, , ]. The K-box protein-protein interaction domain which mediates heterodimerization of MIKC-type MADS proteins contains several heptad repeats in which the first and the fourth positions are occupied by hydrophobic amino acids suggesting that the K-box domain forms three amphipathic alpha-helices referred to as K1, K2, and K3 [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>KOG0015 consensus Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.75  E-value=2.1e-19  Score=157.99  Aligned_cols=77  Identities=36%  Similarity=0.506  Sum_probs=67.2

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCC-------chHHHHHHHhhhh
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES-------TSIEEIIRRYQAA   74 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~-------~s~~~ileRY~~~   74 (254)
                      ||.||+|++|||+..|.|||||||.||||||+|||||.|.+|-|+|.|.+|-+|.|+.|.       ..-+.+|....+.
T Consensus        63 gr~kik~eyIenK~rR~~tFSKRK~GImKKAyELs~LTGtqVllLVaSEtGhVyTFaTpKLep~i~s~~Gk~lIq~cLn~  142 (338)
T KOG0015|consen   63 GRVKIKMEYIENKLRRYVTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFATPKLEPMITSDEGKALIQACLNA  142 (338)
T ss_pred             ceeeccchhhcccceeeeeehhhhhhhHHHHHHhhhcccceEEEEEEecCcceEEeccccccccccchhhHHHHHHHhcC
Confidence            799999999999999999999999999999999999999999999999999999999863       2336666666555


Q ss_pred             cCCc
Q 040075           75 KGVR   78 (254)
Q Consensus        75 ~~~~   78 (254)
                      +...
T Consensus       143 pd~~  146 (338)
T KOG0015|consen  143 PDTP  146 (338)
T ss_pred             CCCC
Confidence            5443

>COG5068 ARG80 Regulator of arginine metabolism and related MADS box-containing transcription factors [Transcription]

Probab=99.39  E-value=9.1e-14  Score=127.63  Aligned_cols=61  Identities=43%  Similarity=0.569  Sum_probs=59.3

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCC
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES   61 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~   61 (254)
                      |||+||.|..|+|+++|.|||+||+.||+|||.||+||.|.+|.++|.|.+|+++.|+.|.
T Consensus        81 ~~~~~~~is~i~nk~~r~vtf~Krk~gI~kka~ElsvLt~~~vl~lvise~g~v~tf~tp~  141 (412)
T COG5068          81 VTGRKIGISYITNKTKRSVTFSKRKHGINKKAFELSVLTGTEVLLLVISENGLVHTFTTPK  141 (412)
T ss_pred             cccccCCcccccCcccccchhhhhhhhhhhhhhhhhhccCCceEEEEecCCCceeeecCCc
Confidence            7899999999999999999999999999999999999999999999999999999999953

>PF06005 DUF904: Protein of unknown function (DUF904); InterPro: IPR009252 Cell division protein ZapB is a non-essential, abundant cell division factor that is required for proper Z-ring formation

Probab=91.11  E-value=2.4  Score=30.39  Aligned_cols=49  Identities=31%  Similarity=0.456  Sum_probs=36.3

Q ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040075          121 VKLEELTQLEHQLECSVKKVRVRKMEILRQQTDNLLRKEKMLEEENEQIFSLLK  174 (254)
Q Consensus       121 Ls~~EL~~LE~~Le~~L~~VR~RK~~ll~~qi~~lkkk~~~l~een~~L~~~l~  174 (254)
                      ++++.|..||..+..++..|..     |..+++.|+.+...|.++|..|.....
T Consensus         1 M~~E~l~~LE~ki~~aveti~~-----Lq~e~eeLke~n~~L~~e~~~L~~en~   49 (72)
T PF06005_consen    1 MSLELLEQLEEKIQQAVETIAL-----LQMENEELKEKNNELKEENEELKEENE   49 (72)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            4788999999999999999865     566667888886666666666666553

It is recruited early to the divisome by direct interaction with FtsZ, stimulating Z-ring assembly and thereby promoting cell division earlier in the cell cycle. Its recruitment to the Z-ring requires functional FtsA or ZipA.; GO: 0000917 barrier septum formation, 0043093 cytokinesis by binary fission, 0005737 cytoplasm; PDB: 2JEE_A.

>PHA03155 hypothetical protein; Provisional

Probab=81.79  E-value=14  Score=28.73  Aligned_cols=60  Identities=17%  Similarity=0.174  Sum_probs=48.0

Q ss_pred             CcchhHHHHHhhhhhhhhHHHHhhhcccCCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 040075           85 NHDSEAIYNELGRMRKETHNLELSLRRYTGDIDLNSVKLEELTQLEHQLECSVKKVRVRKM  145 (254)
Q Consensus        85 ~~~~e~l~~e~~kLkke~~~L~~~~r~~~Ge~dL~~Ls~~EL~~LE~~Le~~L~~VR~RK~  145 (254)
                      +...|.|..++.+|+-+|..|++.+++-.+. +=.-|+..+=..+-...-.+|...-.+|.
T Consensus         7 ~~tvEeLaaeL~kL~~ENK~LKkkl~~~~~p-~d~~LT~~qKea~I~s~v~~Lt~~A~~KI   66 (115)
T PHA03155          7 CADVEELEKELQKLKIENKALKKKLLQHGNP-EDELLTPAQKDAIINSLVNKLTKKAEEKI   66 (115)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHHHHHHccCCC-CccccCHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6678999999999999999999998775554 44668988888888887777777666554

>PRK04098 sec-independent translocase; Provisional

Probab=81.37  E-value=0.43  Score=39.40  Aligned_cols=30  Identities=13%  Similarity=0.246  Sum_probs=23.0

Q ss_pred             cEEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075           42 EIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK   75 (254)
Q Consensus        42 ~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~   75 (254)
                      =||||||+| +|++++..   ++-..+..|++..
T Consensus        14 vVaLlvfGP-~KLP~~~r---~lGk~ir~~K~~~   43 (158)
T PRK04098         14 VVAIIFLGP-DKLPQAMV---DIAKFFKAVKKTI   43 (158)
T ss_pred             HHHHhhcCc-hHHHHHHH---HHHHHHHHHHHHH
Confidence            378999999 69998874   5777777777654

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	254
3kov_A	90	Structure Of Mef2a Bound To Dna Reveals A Completel		6e-15
1egw_A	77	Crystal Structure Of Mef2a Core Bound To Dna Length		6e-15
1c7u_A	85	Complex Of The Dna Binding Core Domain Of The Trans		6e-15
1tqe_P	93	Mechanism Of Recruitment Of Class Ii Histone Deacet		8e-15
3mu6_A	71	Inhibiting The Binding Of Class Iia Histone Deacety		2e-14
1n6j_A	93	Structural Basis Of Sequence-Specific Recruitment O		6e-14
1mnm_A	100	Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLE		3e-08
1k6o_B	103	Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dn		6e-06
1srs_A	92	Serum Response Factor (Srf) Core Complexed With Spe		8e-06

>pdb|3KOV|A Chain A, Structure Of Mef2a Bound To Dna Reveals A Completely Folded Mads-BoxMEF2 DOMAIN THAT RECOGNIZES DNA AND RECRUITS Transcription Co-Factors Length = 90

Iteration: 1
 Score = 77.8 bits (190), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58
Query: 62 TSIEEIIRRY 71
          T +++++ +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1EGW|A Chain A, Crystal Structure Of Mef2a Core Bound To Dna Length = 77

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58
Query: 62 TSIEEIIRRY 71
          T +++++ +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1C7U|A Chain A, Complex Of The Dna Binding Core Domain Of The Transcription Factor Mef2a With A 20mer Oligonucleotide Length = 85

Iteration: 1
 Score = 77.4 bits (189), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 38/70 (54%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVL DAEI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLADAEIALIIFNSSNKLFQYA--S 58
Query: 62 TSIEEIIRRY 71
          T +++++ +Y
Sbjct: 59 TDMDKVLLKY 68

>pdb|1TQE|P Chain P, Mechanism Of Recruitment Of Class Ii Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 77.4 bits (189), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 38/71 (53%), Positives = 53/71 (74%), Gaps = 2/71 (2%)
Query: 1  MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
          MGR KI+I+RI  + NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+   +L ++   
Sbjct: 1  MGRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYA-- 58
Query: 61 STSIEEIIRRY 71
          ST ++ ++ +Y
Sbjct: 59 STDMDRVLLKY 69

>pdb|3MU6|A Chain A, Inhibiting The Binding Of Class Iia Histone Deacetylases To Myocyte Enhancer Factor-2 By Small Molecules Length = 71

Iteration: 1
 Score = 75.9 bits (185), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 39/72 (54%), Positives = 53/72 (73%), Gaps = 2/72 (2%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58
Query: 62 TSIEEIIRRYQA 73
          T +++++ +Y A
Sbjct: 59 TDMDKVLLKYTA 70

>pdb|1N6J|A Chain A, Structural Basis Of Sequence-Specific Recruitment Of Histone Deacetylases By Myocyte Enhancer Factor-2 Length = 93

Iteration: 1
 Score = 74.3 bits (181), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 37/70 (52%), Positives = 52/70 (74%), Gaps = 2/70 (2%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I+RI  + NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+   +L ++   S
Sbjct: 1  GRKKIQISRILDQRNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSANRLFQYA--S 58
Query: 62 TSIEEIIRRY 71
          T ++ ++ +Y
Sbjct: 59 TDMDRVLLKY 68

>pdb|1MNM|A Chain A, Yeast Matalpha2MCM1DNA TERNARY TRANSCRIPTION COMPLEX Crystal Structure Length = 100

Iteration: 1
 Score = 55.5 bits (132), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/57 (50%), Positives = 40/57 (70%)
Query: 3  RGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
          R KIEI  IE++T R VTFSKR+ G++KKA ELSVL   ++ L++ S TG +  F +
Sbjct: 18 RRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST 74

>pdb|1K6O|B Chain B, Crystal Structure Of A Ternary Sap-1SRFC-Fos Sre Dna Complex Length = 103

Iteration: 1
 Score = 47.8 bits (112), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
          GR KI++  I+++  R  TFSKR+ G++KKA ELS L   ++ L++ S TG +  F +
Sbjct: 10 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 67

>pdb|1SRS|A Chain A, Serum Response Factor (Srf) Core Complexed With Specific Sre Dna Length = 92

Iteration: 1
 Score = 47.4 bits (111), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 24/58 (41%), Positives = 38/58 (65%)
Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCS 59
          GR KI++  I+++  R  TFSKR+ G++KKA ELS L   ++ L++ S TG +  F +
Sbjct: 11 GRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT 68

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	254
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	3e-37
1egw_A	77	MADS box transcription enhancer factor 2, polypept	6e-37
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	2e-36
1hbx_A	92	SRF, serum response factor; gene regulation, trans	2e-36
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	3e-35

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A Length = 90

 Score =  125 bits (316), Expect = 3e-37
 Identities = 38/75 (50%), Positives = 52/75 (69%), Gaps = 2/75 (2%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58

Query: 62 TSIEEIIRRYQAAKG 76
          T +++++ +Y     
Sbjct: 59 TDMDKVLLKYTEYNE 73

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A* Length = 77

 Score =  124 bits (313), Expect = 6e-37
 Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58

Query: 62 TSIEEIIRRYQ 72
          T +++++ +Y 
Sbjct: 59 TDMDKVLLKYT 69

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1 Length = 100

 Score =  124 bits (312), Expect = 2e-36
 Identities = 35/89 (39%), Positives = 51/89 (57%), Gaps = 4/89 (4%)

Query: 1   MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
             R KIEI  IE++T R VTFSKR+ G++KKA ELSVL   ++ L++ S TG +  F   
Sbjct: 16  KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS-- 73

Query: 61  STSIEEIIRRYQAAKGVRIPAGVSNHDSE 89
           +   E I+ + +      I A ++  D E
Sbjct: 74  TPKFEPIVTQQEGRNL--IQACLNAPDDE 100

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A* Length = 92

 Score =  123 bits (310), Expect = 2e-36
 Identities = 25/78 (32%), Positives = 44/78 (56%), Gaps = 2/78 (2%)

Query: 1  MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           GR KI++  I+++  R  TFSKR+ G++KKA ELS L   ++ L++ S TG +  F   
Sbjct: 10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-- 67

Query: 61 STSIEEIIRRYQAAKGVR 78
          +  ++ +I        ++
Sbjct: 68 TRKLQPMITSETGKALIQ 85

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1 Length = 103

 Score =  120 bits (303), Expect = 3e-35
 Identities = 25/89 (28%), Positives = 45/89 (50%), Gaps = 2/89 (2%)

Query: 1  MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           GR KI++  I+++  R  TFSKR+ G++KKA ELS L   ++ L++ S TG +  F   
Sbjct: 9  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-- 66

Query: 61 STSIEEIIRRYQAAKGVRIPAGVSNHDSE 89
          +  ++ +I        ++      +    
Sbjct: 67 TRKLQPMITSETGKALIQTCLNSPDSPPR 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	254
1egw_A	77	MADS box transcription enhancer factor 2, polypept	100.0
3p57_A	90	Myocyte-specific enhancer factor 2A; protein-DNA c	100.0
1mnm_A	100	Protein (MCM1 transcriptional regulator); transcri	100.0
1hbx_A	92	SRF, serum response factor; gene regulation, trans	100.0
1k6o_B	103	SRF, serum response factor; protein/DNA complex, t	100.0

>1egw_A MADS box transcription enhancer factor 2, polypeptide A; MADS-box transcription factor, DNA/protein complex, transcription/DNA; HET: DNA; 1.50A {Homo sapiens} SCOP: d.88.1.1 PDB: 1c7u_A 3mu6_A*

Probab=100.00  E-value=1e-38  Score=230.99  Aligned_cols=74  Identities=51%  Similarity=0.813  Sum_probs=69.5

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCC
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGV   77 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~   77 (254)
                      ||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|  ++|++||+||+..++.
T Consensus         1 GR~Ki~ik~I~n~~~R~vTfsKRr~GL~KKA~ELsvLCdaeV~livfs~~gk~~~~~s--~~~~~il~ry~~~~~~   74 (77)
T 1egw_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEP   74 (77)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHC---
T ss_pred             CCceeeeEEecCchHHHHHHHHhHHHHHHHHHHHhcccCCeEEEEEECCCCCEeeCCC--CCHHHHHHHHHhccCC
Confidence            8999999999999999999999999999999999999999999999999999999998  6799999999987643

>3p57_A Myocyte-specific enhancer factor 2A; protein-DNA complex, transcription factor, transcriptional activation, zinc finger; HET: DNA; 2.19A {Homo sapiens} PDB: 3kov_A* 1tqe_P 1n6j_A

Probab=100.00  E-value=5.9e-38  Score=232.50  Aligned_cols=76  Identities=50%  Similarity=0.782  Sum_probs=72.7

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhcCCcc
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAKGVRI   79 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~~~~~   79 (254)
                      ||+||+|++|||+++|||||||||+||||||.||||||||+||||||||+|++|+|+|  ++|+.||+||+..++...
T Consensus         1 GR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valiifs~~gk~~~f~s--~~~~~il~rY~~~~~~~~   76 (90)
T 3p57_A            1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTEYNEPHE   76 (90)
T ss_dssp             CCSCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHHCCSCCC
T ss_pred             CCCcceeEEecCchHHHHHHHHhhhhHHHHHHHHHhccCCceEEEEECCCCCEEEeCC--CCHHHHHHHHHhcCcccc
Confidence            8999999999999999999999999999999999999999999999999999999998  689999999999876644

>1mnm_A Protein (MCM1 transcriptional regulator); transcription regulation, transcriptional repression, DNA- binding protein; HET: DNA; 2.25A {Saccharomyces cerevisiae} SCOP: d.88.1.1

Probab=100.00  E-value=3.1e-36  Score=227.00  Aligned_cols=71  Identities=44%  Similarity=0.612  Sum_probs=68.1

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA   73 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~   73 (254)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+||+|+|+|  +++..|+++|..
T Consensus        16 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--ps~~~il~r~~G   86 (100)
T 1mnm_A           16 KERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEG   86 (100)
T ss_dssp             CCCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHH
T ss_pred             CCccceeeEEecCcchhhhhhhHhhhhHHHHHHHHHHhcCCcEEEEEecCCCCcceecC--CCHHHHHHHhhC
Confidence            89999999999999999999999999999999999999999999999999999999999  468899998854

>1hbx_A SRF, serum response factor; gene regulation, transcription complex; 3.15A {Homo sapiens} SCOP: d.88.1.1 PDB: 1srs_A*

Probab=100.00  E-value=5.3e-36  Score=222.91  Aligned_cols=70  Identities=36%  Similarity=0.542  Sum_probs=67.3

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhh
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQ   72 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~   72 (254)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|+|  ++|..+|++|.
T Consensus        10 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~V~livfs~~gk~~~f~s--~~~~~~i~~~~   79 (92)
T 1hbx_A           10 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSET   79 (92)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTSCEEEEEC--GGGGGGTSSHH
T ss_pred             CCcceEEEEEecChhHHHHHHHHhhhhHHHHHHHHHhhcCCceEEEEECCCCCEEEecC--CCHHHHHhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999  67999998664

>1k6o_B SRF, serum response factor; protein/DNA complex, transcription factor, combinatorial gene regulation, ETS proteins, MADS-box proteins; 3.19A {Homo sapiens} SCOP: d.88.1.1

Probab=100.00  E-value=1.9e-35  Score=224.00  Aligned_cols=69  Identities=36%  Similarity=0.550  Sum_probs=66.8

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHh
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRY   71 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY   71 (254)
                      |||+||+|++|||.++|||||+|||+||||||+||||||||+||||||||+|++|+|++  ++|..||+++
T Consensus         9 mgR~Ki~ik~Ien~~~R~vTFsKRr~GL~KKA~ELsvLCda~Valivfs~~gk~~~f~s--~~~~~vi~~~   77 (103)
T 1k6o_B            9 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSE   77 (103)
T ss_dssp             CCSCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECSSSCEEEEEC--GGGGGGTSSH
T ss_pred             CCcceeEEEEecCchHHHHhHhHhhHhHHHHHHHHHhhhCCceEEEEEeCCCCeeeecC--ccHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999998  6799999874

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	254
d1egwa_	71	d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {	5e-34
d1srsa_	84	d.88.1.1 (A:) Serum response factor (SRF) core {Hu	5e-33
d1mnma_	85	d.88.1.1 (A:) MCM1 transcriptional regulator {Bake	2e-32

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]} Length = 71

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  115 bits (290), Expect = 5e-34
 Identities = 38/71 (53%), Positives = 52/71 (73%), Gaps = 2/71 (2%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
          GR KI+I RI    NRQVTF+KR+ GL+KKA ELSVLCD EI LIIF+ + KL ++   S
Sbjct: 1  GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYA--S 58

Query: 62 TSIEEIIRRYQ 72
          T +++++ +Y 
Sbjct: 59 TDMDKVLLKYT 69

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  113 bits (284), Expect = 5e-33
 Identities = 25/72 (34%), Positives = 42/72 (58%), Gaps = 2/72 (2%)

Query: 1  MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSE 60
           GR KI++  I+++  R  TFSKR+ G++KKA ELS L   ++ L++ S TG +  F   
Sbjct: 2  RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFA-- 59

Query: 61 STSIEEIIRRYQ 72
          +  ++ +I    
Sbjct: 60 TRKLQPMITSET 71

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 85

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  111 bits (280), Expect = 2e-32
 Identities = 31/71 (43%), Positives = 45/71 (63%), Gaps = 2/71 (2%)

Query: 2  GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSES 61
           R KIEI  IE++T R VTFSKR+ G++KKA ELSVL   ++ L++ S TG +  F   +
Sbjct: 3  ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFS--T 60

Query: 62 TSIEEIIRRYQ 72
             E I+ + +
Sbjct: 61 PKFEPIVTQQE 71

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	254
d1egwa_	71	Myocyte enhancer factor Mef2a core {Human (Homo sa	100.0
d1srsa_	84	Serum response factor (SRF) core {Human (Homo sapi	100.0
d1mnma_	85	MCM1 transcriptional regulator {Baker's yeast (Sac	99.98

>d1egwa_ d.88.1.1 (A:) Myocyte enhancer factor Mef2a core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Myocyte enhancer factor Mef2a core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=2.4e-37  Score=218.41  Aligned_cols=70  Identities=54%  Similarity=0.878  Sum_probs=68.2

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhh
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQA   73 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~   73 (254)
                      ||+||+|++|||+++|+|||||||+||||||.||||||||+||||||||+|++|+|+|  +++++|++||+.
T Consensus         1 GR~Ki~ik~Ie~~~~R~vTFsKRk~GL~KKa~ELs~LC~~~valiv~s~~gk~~~f~s--~~~~~vl~ry~~   70 (71)
T d1egwa_           1 GRKKIQITRIMDERNRQVTFTKRKFGLMKKAYELSVLCDCEIALIIFNSSNKLFQYAS--TDMDKVLLKYTE   70 (71)
T ss_dssp             CCSCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCEEEEES--SCHHHHHHHHHH
T ss_pred             CCccceEEeccCCchheeehhHhhhhHHHHHHHHhhccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHhc
Confidence            8999999999999999999999999999999999999999999999999999999998  579999999975

>d1srsa_ d.88.1.1 (A:) Serum response factor (SRF) core {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: Serum response factor (SRF) core
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1.9e-35  Score=213.95  Aligned_cols=72  Identities=35%  Similarity=0.528  Sum_probs=69.2

Q ss_pred             CCccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhh
Q 040075            1 MGRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAA   74 (254)
Q Consensus         1 MgR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~   74 (254)
                      +||+||+|++|||+++|+|||+|||+||||||+||||||||+||||||||+|++|+|+|  ++++.|+++|+..
T Consensus         2 ~GR~Ki~i~~Ie~~~~R~vTFsKRr~GL~KKa~ELs~Lc~~~v~liv~s~~gk~~~f~s--~~~~~vi~~~~~~   73 (84)
T d1srsa_           2 RGRVKIKMEFIDNKLRRYTTFSKRKTGIMKKAYELSTLTGTQVLLLVASETGHVYTFAT--RKLQPMITSETGK   73 (84)
T ss_dssp             CCCCCCCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEECTTCCEEEEEC--GGGHHHHSSHHHH
T ss_pred             CCCceeeEEeecCcchhhhhhHHhhhhHHHHHHHHhcccCCcEEEEEEcCCCCEEEeeC--CCHHHHHHHHHHH
Confidence            69999999999999999999999999999999999999999999999999999999998  7899999999743

>d1mnma_ d.88.1.1 (A:) MCM1 transcriptional regulator {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: SRF-like
superfamily: SRF-like
family: SRF-like
domain: MCM1 transcriptional regulator
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.98  E-value=5.2e-35  Score=212.98  Aligned_cols=72  Identities=43%  Similarity=0.611  Sum_probs=69.0

Q ss_pred             CccccceEEeCCCCCcceeccccccchhhhhhhhhccCCCcEEEEEecCCCCcccccCCCchHHHHHHHhhhhc
Q 040075            2 GRGKIEIARIESRTNRQVTFSKRRGGLLKKARELSVLCDAEIGLIIFSCTGKLTEFCSESTSIEEIIRRYQAAK   75 (254)
Q Consensus         2 gR~Ki~ik~Ien~~~RqvTfsKRr~GL~KKA~ELSvLCda~valIifS~~gk~~e~~s~~~s~~~ileRY~~~~   75 (254)
                      ||+||+|++|+|+.+|+|||||||+||||||.||||||||+||||||||+|++|+|+|  ++|+.|++||...+
T Consensus         3 ~R~Ki~i~~I~~~~~R~vTFsKRr~GL~KKa~ELsvLc~a~vaviv~s~~gk~~~f~s--p~v~~vl~r~~~~~   74 (85)
T d1mnma_           3 ERRKIEIKFIENKTRRHVTFSKRKHGIMKKAFELSVLTGTQVLLLVVSETGLVYTFST--PKFEPIVTQQEGRN   74 (85)
T ss_dssp             CCCCCCSSCCCSHHHHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECTTCCEEEEEC--TTTTHHHHSHHHHH
T ss_pred             CccceEEEEecCCchhhhhhHHHHhhHHHHHHHHhccCCCcEEEEEEcCCCCEEeccC--CCHHHHHHHHhccc
Confidence            8999999999999999999999999999999999999999999999999999999998  57999999998643