Citrus Sinensis ID: 040086

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCCHVGMRDNNLQFLNESRPLLRGALG
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHHHHccccccccccccccEEEEEEccccEEEEEEccccccHHHHHHHHHHHHHHcccccccEEEcccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHHHHHHHHHHHHHHHHHHHccccccccccccccccEEEEEEcccccEEEEEHHHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHHccccccccccccHHHHHHHcccccccccccEcccccccHccccc
Coil and Loop (DISEMBL)
MSKCNKIRHIVRIRQMLRQWRRKARIAAsasratpsdvpaghVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEeygfshvgpltipcdestFEEILRVvsrpetgtpdplwsvkEVQRcchvgmrdnnlqflnesrpllrgalg
Flexible Loop (DISEMBL)
mskcnkirhivrIRQMLRQWRRKARIAAsasratpsdvpaghVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSrpetgtpdplwsVKEVQRCCHVGMrdnnlqflnesrpllrgalg
Low Complexity Region (SEG)
MSKCNKIRHIVRIRQMLRQWrrkariaasasraTPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCCHVGMRDNNLQFLNESRPLLRGALG
Disordered region (IsUnstruct)
*****KIRHIVRIRQMLRQWRRKARIA**********VPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCCHVGMRDNNLQFL************
Disordered Region (DISOPRED)
**************QML************************HVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILR****************************************LLRGAL*
Disordered Region (DISEMBL)
MSKCNKIRHIVRIRQMLRQ*******************PAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCCHVGMRDNNLQFLNESRPLLRGALG
Disordered Region (DISPRO)
***CNKIRHIVRIRQMLRQWRRKARI********PSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRP******PLWSVKEVQRCCHVGMRDNNLQFLNESRPLLRGALG
Transmembrane Helix (TMHMM)
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Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
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Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCCHVGMRDNNLQFLNESRPLLRGALG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
P33080	92	Auxin-induced protein X10	no	no	0.5	0.793	0.486	2e-14
P33083	90	Auxin-induced protein 6B	no	no	0.520	0.844	0.480	3e-14
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.554	0.880	0.426	2e-13
P33079	93	Auxin-induced protein 10A	no	no	0.534	0.838	0.451	7e-13
P33082	82	Auxin-induced protein X15	no	no	0.417	0.743	0.5	7e-13
P33081	82	Auxin-induced protein 15A	no	no	0.452	0.804	0.507	7e-13

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 77.8 bits (190), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 36/74 (48%), Positives = 49/74 (66%), Gaps = 1/74 (1%)

Query: 22 RKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH 81
          RK  IAA+ + +   +VP G++ V VG   RRF++  +YLN P F+ LL QAEEE+G+ H
Sbjct: 9  RKTSIAANQASSKSVEVPKGYLVVYVGDKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDH 68

Query: 82 -VGPLTIPCDESTF 94
           +G LTIPC E  F
Sbjct: 69 PMGGLTIPCKEDEF 82

Glycine max (taxid: 3847)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 1/77 (1%)

Query: 22 RKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH 81
          RKA  +A+ + +   DV  G++AV VG   RRF++  +YLN P F+ LL QAEEE+G+ H
Sbjct: 9  RKASFSANQASSKAVDVEKGYLAVYVGEKMRRFVIPVSYLNKPSFQDLLSQAEEEFGYHH 68

Query: 82 -VGPLTIPCDESTFEEI 97
            G LTIPC E  F+ I
Sbjct: 69 PNGGLTIPCSEDVFQHI 85

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 35/82 (42%), Positives = 53/82 (64%), Gaps = 1/82 (1%)

Query: 22  RKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH 81
           RK   A + + +   D P G++AV VG + +RF++  ++LN P+F+ LL QAEEE+G+ H
Sbjct: 9   RKTLSARNEASSKVLDAPKGYLAVYVGENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDH 68

Query: 82  -VGPLTIPCDESTFEEILRVVS 102
            +G LTIPC E  F+ I   +S
Sbjct: 69  PMGGLTIPCSEDLFQHITSCLS 90

Vigna radiata var. radiata (taxid: 3916)

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/82 (45%), Positives = 50/82 (60%), Gaps = 4/82 (4%)

Query: 22  RKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH 81
           R+     + + +   DVP G+ AV VG   RRF +  +YLN P F++LL QAEEE+G+ H
Sbjct: 10  RRTSFYTTQAASKRVDVPKGYAAVYVGDKMRRFTIPVSYLNEPSFQELLSQAEEEFGYDH 69

Query: 82  -VGPLTIPCDESTFEEILRVVS 102
            +G LTIPC E   EE L V +
Sbjct: 70  PMGGLTIPCKE---EEFLNVTA 88

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 31/62 (50%), Positives = 43/62 (69%), Gaps = 1/62 (1%)

Query: 37 DVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPLTIPCDESTFE 95
          D P G++AV VG   +RF++  +Y+N P F+ LL QAEEE+G+ H +G LTIPC E  F+
Sbjct: 16 DAPKGYLAVYVGEKMKRFVIPVSYMNQPSFQDLLTQAEEEFGYDHPMGGLTIPCSEEVFQ 75

Query: 96 EI 97
           I
Sbjct: 76 RI 77

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 72.8 bits (177), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 35/69 (50%), Positives = 48/69 (69%), Gaps = 3/69 (4%)

Query: 30 ASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPLTIP 88
          AS+A  +D P G++AV VG   +RF++  +YLN P F+ LL QAEEE+G+ H +G LTIP
Sbjct: 11 ASKA--ADAPKGYLAVYVGEKLKRFVIPVSYLNQPSFQDLLSQAEEEFGYDHPMGGLTIP 68

Query: 89 CDESTFEEI 97
          C E  F+ I
Sbjct: 69 CSEDVFQCI 77

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
255538892	151	Auxin-induced protein 6B, putative [Rici	0.958	0.927	0.671	7e-51
255543905	142	Indole-3-acetic acid-induced protein ARG	0.958	0.985	0.703	2e-50
224077988	145	SAUR family protein [Populus trichocarpa	0.972	0.979	0.664	2e-50
224105269	146	SAUR family protein [Populus trichocarpa	0.972	0.972	0.632	1e-48
224065947	149	SAUR family protein [Populus trichocarpa	0.945	0.926	0.645	2e-48
224082982	149	SAUR family protein [Populus trichocarpa	0.938	0.919	0.642	9e-48
449460201	150	PREDICTED: auxin-induced protein 6B-like	0.952	0.926	0.636	8e-46
356552069	151	PREDICTED: auxin-induced protein 6B-like	0.952	0.920	0.627	1e-43
356562397	151	PREDICTED: auxin-induced protein 6B-like	0.952	0.920	0.627	2e-43
225458032	151	PREDICTED: auxin-induced protein 6B-like	0.958	0.927	0.626	3e-43

>gi|255538892|ref|XP_002510511.1| Auxin-induced protein 6B, putative [Ricinus communis] gi|223551212|gb|EEF52698.1| Auxin-induced protein 6B, putative [Ricinus communis]

 Score =  204 bits (520), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 96/143 (67%), Positives = 117/143 (81%), Gaps = 3/143 (2%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATY 60
           M KC+KIRHIVR+RQMLR+WR KARI+A+     PSDVPAGHVAVCVGSS RRF+VRATY
Sbjct: 5   MGKCSKIRHIVRLRQMLRRWRNKARISANR---IPSDVPAGHVAVCVGSSCRRFVVRATY 61

Query: 61  LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQR 120
           LNHP+FKKLL+QAEEEYGFS+ GPL IPCDE+ FEE++  +SR E+G    L+++++ QR
Sbjct: 62  LNHPVFKKLLMQAEEEYGFSNQGPLVIPCDETVFEEVINYISRSESGNSTRLFNLEDFQR 121

Query: 121 CCHVGMRDNNLQFLNESRPLLRG 143
            CHVG+R + L F  ESRPLL G
Sbjct: 122 YCHVGVRSSKLDFWTESRPLLNG 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543905|ref|XP_002513015.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis] gi|223548026|gb|EEF49518.1| Indole-3-acetic acid-induced protein ARG7, putative [Ricinus communis]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 102/145 (70%), Positives = 121/145 (83%), Gaps = 5/145 (3%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASA-SRATPSDVPAGHVAVCVGSSSRRFIVRAT 59
           MSK NKIRHIVR++QML++WRRKAR+ AS+   A P+DVPAGHVAVCVG S +RFIVRAT
Sbjct: 1   MSKSNKIRHIVRVQQMLKRWRRKARLTASSRGAAAPADVPAGHVAVCVGESYKRFIVRAT 60

Query: 60  YLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVV-SRPETGTPDPLWSVKEV 118
           YLNHP+FK LLVQAEEEYGF ++GPLTIPCDES FEEILRVV SR E+       +V+EV
Sbjct: 61  YLNHPIFKNLLVQAEEEYGFKNIGPLTIPCDESVFEEILRVVSSRSESLR---FSNVEEV 117

Query: 119 QRCCHVGMRDNNLQFLNESRPLLRG 143
           QRCCHV +  ++L+FL+ESRPLL G
Sbjct: 118 QRCCHVDIIRSHLEFLSESRPLLHG 142

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224077988|ref|XP_002305471.1| SAUR family protein [Populus trichocarpa] gi|222848435|gb|EEE85982.1| SAUR family protein [Populus trichocarpa]

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/146 (66%), Positives = 118/146 (80%), Gaps = 4/146 (2%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARI---AASASRATPSDVPAGHVAVCVGSSSRRFIVR 57
           MSKCNKIRHIVRI+QML++WRRKAR+   A S+  A PSDVPAGHVAVCVG+S +RF+VR
Sbjct: 1   MSKCNKIRHIVRIQQMLKRWRRKARVTGGATSSRTAAPSDVPAGHVAVCVGASCKRFVVR 60

Query: 58  ATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKE 117
           ATYLNHP+FK LLV+AEE YGF   GPL IPCDE+ FEEILRVVSR +       +++++
Sbjct: 61  ATYLNHPIFKNLLVEAEEVYGFKTAGPLAIPCDEAVFEEILRVVSRSDPSKMGRFFNLED 120

Query: 118 VQRCCHVGMRDNNLQFLNESRPLLRG 143
           ++RCCHVGMR  N++ L ESRPLL G
Sbjct: 121 LKRCCHVGMR-KNIKLLGESRPLLHG 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224105269|ref|XP_002313749.1| SAUR family protein [Populus trichocarpa] gi|222850157|gb|EEE87704.1| SAUR family protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 93/147 (63%), Positives = 115/147 (78%), Gaps = 5/147 (3%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASASR----ATPSDVPAGHVAVCVGSSSRRFIV 56
           MSKCNKIRHIVRI+QML++WRRKAR+ A A+     A PSDVP GHVA+CVG+S +RF+V
Sbjct: 1   MSKCNKIRHIVRIQQMLKRWRRKARVTAGATSSRTAAAPSDVPVGHVAICVGASCKRFVV 60

Query: 57  RATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVK 116
           RATYLNHP+FK LLV+AEE YGF + GPLTIPCDE+ FEEI+RVVS  +        ++ 
Sbjct: 61  RATYLNHPIFKNLLVEAEEVYGFKNTGPLTIPCDEAVFEEIIRVVSISDPIQSGRFLNLD 120

Query: 117 EVQRCCHVGMRDNNLQFLNESRPLLRG 143
           E++RCCHVG+R  N++ L ES PLL G
Sbjct: 121 EIKRCCHVGLR-GNIELLGESTPLLHG 146

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224065947|ref|XP_002301987.1| SAUR family protein [Populus trichocarpa] gi|118481077|gb|ABK92492.1| unknown [Populus trichocarpa] gi|222843713|gb|EEE81260.1| SAUR family protein [Populus trichocarpa]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 91/141 (64%), Positives = 116/141 (82%), Gaps = 3/141 (2%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATY 60
           ++KC KIRHIVR+RQMLR+WR KAR++A+     PSDVPAGHVAVCVG+  RRF+VRATY
Sbjct: 5   LAKCAKIRHIVRLRQMLRRWRNKARMSANR---IPSDVPAGHVAVCVGTGCRRFVVRATY 61

Query: 61  LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQR 120
           LNHP+FKKLLVQAEEE+GFS+ GPLTIPCDE+ FEE++R +SR E G  D   +++++QR
Sbjct: 62  LNHPIFKKLLVQAEEEFGFSNQGPLTIPCDETLFEEMIRCISRSENGKSDLFVNLEDLQR 121

Query: 121 CCHVGMRDNNLQFLNESRPLL 141
            CHVG+++  L F  +SRPLL
Sbjct: 122 YCHVGVKNAKLDFWTDSRPLL 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082982|ref|XP_002306917.1| SAUR family protein [Populus trichocarpa] gi|222856366|gb|EEE93913.1| SAUR family protein [Populus trichocarpa]

 Score =  194 bits (494), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 90/140 (64%), Positives = 114/140 (81%), Gaps = 3/140 (2%)

Query: 2   SKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYL 61
           +KC KIRHIVR+RQMLR+WR KAR++A+     PSDVPAGHVAVCVG+S RRF+VRATYL
Sbjct: 6   AKCTKIRHIVRLRQMLRRWRNKARMSANR---IPSDVPAGHVAVCVGTSCRRFVVRATYL 62

Query: 62  NHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRC 121
           NHP+FKKLLVQAEEE+GFS+ GPL IPCDE+ FEE++R +SR E G      +++++QR 
Sbjct: 63  NHPIFKKLLVQAEEEFGFSNQGPLVIPCDEAVFEEVIRYISRSENGKSGRFVNLEDLQRY 122

Query: 122 CHVGMRDNNLQFLNESRPLL 141
           CHVG+++  L F  +SRPLL
Sbjct: 123 CHVGVKNAKLDFWTDSRPLL 142

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460201|ref|XP_004147834.1| PREDICTED: auxin-induced protein 6B-like [Cucumis sativus] gi|449519840|ref|XP_004166942.1| PREDICTED: auxin-induced protein 6B-like [Cucumis sativus]

 Score =  187 bits (476), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 91/143 (63%), Positives = 111/143 (77%), Gaps = 4/143 (2%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATY 60
           + KC+KIRHIVR+RQMLR+WR KAR++A+     PSDVPAGHVAVCVG+SSRRF+VRATY
Sbjct: 5   LGKCSKIRHIVRLRQMLRRWRNKARMSANR---IPSDVPAGHVAVCVGTSSRRFVVRATY 61

Query: 61  LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQR 120
           LNHP+FKKLLVQAEEEYGF++ GPL IPCDES FEE++R +SR E+        + + Q 
Sbjct: 62  LNHPVFKKLLVQAEEEYGFTNQGPLAIPCDESVFEEVIRFISRSESPNSGRFVKLDDFQS 121

Query: 121 CCHVGMRDNNLQFLNESRPLLRG 143
            CH+G+R   L    ESRPLL G
Sbjct: 122 YCHIGIR-TGLDLWPESRPLLHG 143

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356552069|ref|XP_003544393.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  180 bits (457), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 116/145 (80%), Gaps = 6/145 (4%)

Query: 2   SKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYL 61
           +KC++IRHIVR+RQMLR+WR KAR+  SA+RA PSDVPAGHVAVCVGS+  RF+VRATYL
Sbjct: 3   AKCSQIRHIVRLRQMLRRWRNKARM--SANRAPPSDVPAGHVAVCVGSNLTRFVVRATYL 60

Query: 62  NHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVK--EVQ 119
           NHP+FKKLL+QAEEEYGF++ GPL IPCDE+ F+++LR +SR +    +   +++  + Q
Sbjct: 61  NHPVFKKLLLQAEEEYGFTNHGPLAIPCDETLFQDVLRFISRSDPAKSNRFLNLELDDFQ 120

Query: 120 R-CCHVGMRDNNLQFLNESRPLLRG 143
           R  CHVG+  NNL F  ESRPLL G
Sbjct: 121 RHHCHVGI-SNNLDFWPESRPLLHG 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356562397|ref|XP_003549458.1| PREDICTED: auxin-induced protein 6B-like [Glycine max]

 Score =  180 bits (456), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 91/145 (62%), Positives = 115/145 (79%), Gaps = 6/145 (4%)

Query: 2   SKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYL 61
           +KC++IRHIVR+RQMLR+WR KAR+  SA+RA PSDVPAGHVAVCVGS+  RF+VRATYL
Sbjct: 3   AKCSQIRHIVRLRQMLRRWRNKARM--SANRAPPSDVPAGHVAVCVGSNLTRFVVRATYL 60

Query: 62  NHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVK--EVQ 119
           NHP+FKKLL+QAEEEYGF++ GPL IPCDE+ F ++LR +SR +    +   +++  + Q
Sbjct: 61  NHPVFKKLLLQAEEEYGFTNHGPLAIPCDETLFRDVLRFISRSDPAKSNRFLNLELDDFQ 120

Query: 120 R-CCHVGMRDNNLQFLNESRPLLRG 143
           R  CHVG+  NNL F  ESRPLL G
Sbjct: 121 RHYCHVGI-SNNLDFWPESRPLLHG 144

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458032|ref|XP_002277332.1| PREDICTED: auxin-induced protein 6B-like [Vitis vinifera]

 Score =  179 bits (455), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 89/142 (62%), Positives = 110/142 (77%), Gaps = 2/142 (1%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAAS-ASRATPSDVPAGHVAVCVGSSSRRFIVRAT 59
             KC+KIRHIVR+RQMLR+WR KA  A+  +S   PSDVPAGHVAVCVG+  +RF+VRAT
Sbjct: 5   FGKCSKIRHIVRLRQMLRRWRHKAAEASRMSSSCIPSDVPAGHVAVCVGTDGKRFVVRAT 64

Query: 60  YLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQ 119
           YLNHP+FKKLLV+AEEEYGF++ GPL++PCDES FEEIL  +SR E        + ++ Q
Sbjct: 65  YLNHPVFKKLLVEAEEEYGFTNQGPLSLPCDESVFEEILCFISRSEASNSARFVNREDFQ 124

Query: 120 RCCHVGMRDNNLQFLNESRPLL 141
           R CHVG+R ++L F  ESRPLL
Sbjct: 125 RYCHVGIR-SSLDFWPESRPLL 145

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
TAIR|locus:2005694	154	AT1G75590 "AT1G75590" [Arabido	0.972	0.922	0.548	1.3e-36
TAIR|locus:2035444	153	AT1G19840 "AT1G19840" [Arabido	0.952	0.908	0.528	1.9e-35
TAIR|locus:2139569	150	AT4G34750 [Arabidopsis thalian	0.938	0.913	0.516	5.8e-34
TAIR|locus:2183805	148	AT5G10990 "AT5G10990" [Arabido	0.931	0.918	0.517	1.8e-32
TAIR|locus:2084851	160	AT3G43120 [Arabidopsis thalian	0.534	0.487	0.481	7.3e-20
TAIR|locus:2180464	190	AT5G20810 "AT5G20810" [Arabido	0.445	0.342	0.538	2.7e-18
TAIR|locus:2061037	178	AT2G24400 "AT2G24400" [Arabido	0.479	0.393	0.442	2.3e-17
TAIR|locus:2128136	189	AT4G31320 [Arabidopsis thalian	0.438	0.338	0.437	2e-16
TAIR|locus:2047117	104	AT2G21220 "AT2G21220" [Arabido	0.691	0.971	0.366	6.9e-15
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.431	0.670	0.582	2.3e-14

TAIR|locus:2005694 AT1G75590 "AT1G75590" [Arabidopsis thaliana (taxid:3702)]

 Score = 394 (143.8 bits), Expect = 1.3e-36, P = 1.3e-36
 Identities = 79/144 (54%), Positives = 98/144 (68%)

Query:     1 MSKCNKIRHIVRIRQMLRQWXXXXXXXXXXXXXTPSDVPAGHVAVCVGSSSRRFIVRATY 60
             + KC+KIRHIVR+RQMLR+W              PSDVP+GHVAV VGSS RRF+VRATY
Sbjct:     5 LGKCSKIRHIVRLRQMLRRWRDQARMSSSFSRCVPSDVPSGHVAVYVGSSCRRFVVRATY 64

Query:    61 LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQR 120
             LNHP+ + LLVQAEEE+GF + GPL IPC+ES FEE +R +SR ++          + Q+
Sbjct:    65 LNHPVLRNLLVQAEEEFGFVNQGPLVIPCEESVFEESIRFISRSDSTRSRRFTCPDDFQK 124

Query:   121 CCHV-GMRDNNLQFLNESRPLLRG 143
              CHV G+R + L    ESRPLL G
Sbjct:   125 NCHVVGIR-SKLDLWIESRPLLHG 147

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2035444 AT1G19840 "AT1G19840" [Arabidopsis thaliana (taxid:3702)]

 Score = 383 (139.9 bits), Expect = 1.9e-35, P = 1.9e-35
 Identities = 75/142 (52%), Positives = 98/142 (69%)

Query:     3 KCNKIRHIVRIRQMLRQWXXXXXXXXXXXXXTPSDVPAGHVAVCVGSSSRRFIVRATYLN 62
             KC+KIRHIVR+RQMLR+W              PSDVP+GHVAVCVGS  RRF+VRA+YLN
Sbjct:     7 KCSKIRHIVRLRQMLRRWRNKARLSSVSRC-VPSDVPSGHVAVCVGSGCRRFVVRASYLN 65

Query:    63 HPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQRCC 122
             HP+   LLVQAEEE+GF++ GPL IPC+ES FEE +R +SR ++          ++Q+C 
Sbjct:    66 HPIISNLLVQAEEEFGFANQGPLVIPCEESVFEEAIRFISRSDSSRSSRFTCPDDLQKC- 124

Query:   123 HVGMR-DNNLQFLNESRPLLRG 143
             + G++  + L  + ESRPLL G
Sbjct:   125 NGGIKIKSKLDLMIESRPLLHG 146

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2139569 AT4G34750 [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 5.8e-34, P = 5.8e-34
 Identities = 77/149 (51%), Positives = 102/149 (68%)

Query:     1 MSKCNKIRHIVRIRQMLRQWXXXXXXXXXXXXXTPSDVPAGHVAVCVGSSSRRFIVRATY 60
             M K NKI  +VRIRQML+QW               SDVP GHVAV VG + RR++VRA +
Sbjct:     1 MGKNNKIGSVVRIRQMLKQWQKKAHIGSSNNDPV-SDVPPGHVAVSVGENRRRYVVRAKH 59

Query:    61 LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPET------GTPDPLWS 114
             LNHP+F++LL +AEEEYGF++VGPL IPCDES FE+I+ +V+R E+      G P P  +
Sbjct:    60 LNHPIFRRLLAEAEEEYGFANVGPLAIPCDESLFEDIIAIVTRCESSSSSGRGNP-PAAT 118

Query:   115 VKEVQRCCHVGMRDNNLQFLNESRPLLRG 143
             +++++RC HVG+  NN+    ESRPLL G
Sbjct:   119 LEDLRRCSHVGLAKNNV----ESRPLLPG 143

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2183805 AT5G10990 "AT5G10990" [Arabidopsis thaliana (taxid:3702)]

 Score = 355 (130.0 bits), Expect = 1.8e-32, P = 1.8e-32
 Identities = 74/143 (51%), Positives = 95/143 (66%)

Query:     1 MSKCNKIRHIVRIRQMLRQWXXXXXXXXXXXXXTPSDVPAGHVAVCVGSSSRRFIVRATY 60
             + KC+KIRHIV++RQMLRQW              PSDVP+GHVAV VG S RRF+V ATY
Sbjct:     5 IGKCSKIRHIVKLRQMLRQWRNKARMSSVRRS-VPSDVPSGHVAVYVGRSCRRFVVLATY 63

Query:    61 LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRPETGTPDPLWSVKEVQR 120
             LNHP+   LLV+AEEE+GF++ GPL IPC+ES FEE +R ++R    T        ++++
Sbjct:    64 LNHPILMNLLVKAEEEFGFANQGPLVIPCEESVFEESIRFITRSSRFT-----CTDDLKK 118

Query:   121 CCHVGMRDNNLQFLNESRPLLRG 143
               H G+R + L  L ESRPLL G
Sbjct:   119 NRHGGIR-SKLDLLMESRPLLHG 140

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2084851 AT3G43120 [Arabidopsis thaliana (taxid:3702)]

 Score = 204 (76.9 bits), Expect = 7.3e-20, Sum P(2) = 7.3e-20
 Identities = 39/81 (48%), Positives = 54/81 (66%)

Query:    35 PSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTF 94
             P DVP G++AV VG   RRFI+   +L+H +FK LL +AEEEYGF H G LTIPC+  TF
Sbjct:    76 PPDVPKGYLAVYVGPELRRFIIPTNFLSHSLFKVLLEKAEEEYGFDHSGALTIPCEVETF 135

Query:    95 EEILRVVS---RPETGTPDPL 112
             + +L+ +    + +T   DP+
Sbjct:   136 KYLLKCIENHPKDDTSAEDPV 156

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=TAS;IPI

TAIR|locus:2180464 AT5G20810 "AT5G20810" [Arabidopsis thaliana (taxid:3702)]

 Score = 186 (70.5 bits), Expect = 2.7e-18, Sum P(2) = 2.7e-18
 Identities = 35/65 (53%), Positives = 47/65 (72%)

Query:    35 PSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTF 94
             P DVP G++AV VG   RRFI+  +YL+H +FK LL +AEEE+GF   G LTIPC+  TF
Sbjct:    76 PHDVPKGNLAVYVGPELRRFIIPTSYLSHSLFKVLLEKAEEEFGFDQSGALTIPCEVETF 135

Query:    95 EEILR 99
             + +L+
Sbjct:   136 KYLLK 140

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005777 "peroxisome" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2061037 AT2G24400 "AT2G24400" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 2.3e-17, Sum P(2) = 2.3e-17
 Identities = 31/70 (44%), Positives = 43/70 (61%)

Query:    38 VPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEI 97
             VP G++AV VG   +R+ +   YL+H  F  LL +AEEE+GF   G L IPC+ S FE I
Sbjct:    64 VPKGYLAVSVGLEKKRYTIPTEYLSHQAFYVLLREAEEEFGFQQAGVLRIPCEVSVFESI 123

Query:    98 LRVVSRPETG 107
             L+++     G
Sbjct:   124 LKIMEEKNEG 133

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2128136 AT4G31320 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
 Identities = 28/64 (43%), Positives = 42/64 (65%)

Query:    38 VPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEI 97
             +P G++AV VG   +R+ +   YL+H  F  LL +AEEE+GF   G L IPC+ + FE I
Sbjct:    80 IPKGYLAVSVGKEEKRYKIPTEYLSHQAFHVLLREAEEEFGFEQAGILRIPCEVAVFESI 139

Query:    98 LRVV 101
             L+++
Sbjct:   140 LKIM 143

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0005516 "calmodulin binding" evidence=ISS

TAIR|locus:2047117 AT2G21220 "AT2G21220" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 37/101 (36%), Positives = 55/101 (54%)

Query:     1 MSKCNKIRHIVRIRQMLRQWXXXXXXXXXXXXXTPSDVPAGHVAVCVGSSSRRFIVRATY 60
             + + +K+     ++Q+L++               P DVP GH  V VG    R+IV  ++
Sbjct:     3 VKRSSKLTQTAMLKQILKRCSSLAKNQCYDEDGLPVDVPKGHFPVYVGEKRSRYIVPISF 62

Query:    61 LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVV 101
             L HP FK LL QAEEE+GF+H   LTIPC+E  F  +  ++
Sbjct:    63 LTHPKFKSLLQQAEEEFGFNHDMGLTIPCEEVVFRSLTSMI 103

GO:0005516 "calmodulin binding" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 184 (69.8 bits), Expect = 2.3e-14, P = 2.3e-14
 Identities = 39/67 (58%), Positives = 48/67 (71%)

Query:    36 SDVPAGHVAVCVGS---SSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPLTIPCDE 91
             S VP GHVAV VG    S +RF+V  +YLNHP F+ LL +AEEE+GF+H +G LTIPC E
Sbjct:    19 SRVPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLTIPCRE 78

Query:    92 STFEEIL 98
              TF  +L
Sbjct:    79 ETFVGLL 85

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	7e-36
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	4e-21
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	2e-16
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	4e-16

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  118 bits (299), Expect = 7e-36
 Identities = 39/96 (40%), Positives = 60/96 (62%), Gaps = 1/96 (1%)

Query: 3  KCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLN 62
            ++++     ++ +           S+S+++ +DVP GH AV VG  +RRF+V  +YLN
Sbjct: 1  MASRLKKASSAKKWILSAASGRS-RGSSSKSSSADVPKGHFAVYVGEETRRFVVPISYLN 59

Query: 63 HPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEIL 98
          HP+F++LL +AEEE+GF   G LTIPCD   FE +L
Sbjct: 60 HPLFQELLDRAEEEFGFDQDGGLTIPCDVVVFEHLL 95

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 81.7 bits (202), Expect = 4e-21
 Identities = 38/98 (38%), Positives = 54/98 (55%)

Query: 1   MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATY 60
           + K NK+     ++Q+L++     +         P DVP GH  V VG +  R+IV  ++
Sbjct: 3   IKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISF 62

Query: 61  LNHPMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEIL 98
           L HP F+ LL QAEEE+GF H   LTIPC+E  F  + 
Sbjct: 63  LTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLT 100

Length = 104

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 69.8 bits (170), Expect = 2e-16
 Identities = 35/73 (47%), Positives = 49/73 (67%), Gaps = 5/73 (6%)

Query: 31  SRATPSDVPAGHVAVCVGSS----SRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPL 85
           S ++   VP GHVAV VG       +RF+V  ++LNHP FK+ L +AEEE+GF+H +G L
Sbjct: 28  SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGL 87

Query: 86  TIPCDESTFEEIL 98
           TIPC E  F +++
Sbjct: 88  TIPCREEVFLDLI 100

Length = 105

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 69.0 bits (168), Expect = 4e-16
 Identities = 37/71 (52%), Positives = 48/71 (67%), Gaps = 3/71 (4%)

Query: 27 AASASRATPSDVPAGHVAVCVGSS--SRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VG 83
          + S+S  T   VP GHVAV VG     +RF+V  +YLNHP+F++ L +AEEE GF H +G
Sbjct: 28 SPSSSTTTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMG 87

Query: 84 PLTIPCDESTF 94
           LTIPC E +F
Sbjct: 88 GLTIPCREESF 98

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
PLN03090	104	auxin-responsive family protein; Provisional	100.0
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03220	105	uncharacterized protein; Provisional	100.0
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	80.72
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	80.47

>PLN03090 auxin-responsive family protein; Provisional

Probab=100.00  E-value=1.7e-42  Score=256.10  Aligned_cols=101  Identities=38%  Similarity=0.695  Sum_probs=92.9

Q ss_pred             CCcccchhhHHHHHHHHHHHHHHHHhhcccCCCCCCCCCCCcEEEEecCCceeeeeecccCCcHHHHHHHHHHHHhcCCC
Q 040086            1 MSKCNKIRHIVRIRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFS   80 (146)
Q Consensus         1 m~k~~ki~~i~kL~~~~rkW~~~a~~~~~~~~~~~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~   80 (146)
                      |.|++||+++++|+||+|||+++++.+.......|.+||+||||||||++++||+||++|||||+|++||++|||||||.
T Consensus         3 ~~k~~ki~~~~~~kq~l~r~~s~~~~~~~~~~~~~~~vpkG~~aVyVG~~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~   82 (104)
T PLN03090          3 IKKSNKLTQTAMLKQILKRCSSLGKKQGYDEDGLPLDVPKGHFPVYVGENRSRYIVPISFLTHPEFQSLLQQAEEEFGFD   82 (104)
T ss_pred             cccccchhHHHHHHHHHHHHHHhcccCCcccccCCCCCCCCcEEEEECCCCEEEEEEHHHcCCHHHHHHHHHHHHHhCCC
Confidence            35899999999999999999999876443224578899999999999999999999999999999999999999999999


Q ss_pred             CCCCeeecCChHHHHHHHHHh
Q 040086           81 HVGPLTIPCDESTFEEILRVV  101 (146)
Q Consensus        81 ~~G~L~IPC~~~~Fe~vl~~i  101 (146)
                      |+|+|+||||++.|++++|+|
T Consensus        83 ~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         83 HDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             CCCcEEEeCCHHHHHHHHHHh
Confidence            999999999999999999998

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=2.7e-35  Score=215.62  Aligned_cols=91  Identities=49%  Similarity=0.902  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHhhcccC----CCCCCCCCCCcEEEEecCCceeeeeecccCCcHHHHHHHHHHHHhcCCCCCCCeee
Q 040086           12 RIRQMLRQWRRKARIAASAS----RATPSDVPAGHVAVCVGSSSRRFIVRATYLNHPMFKKLLVQAEEEYGFSHVGPLTI   87 (146)
Q Consensus        12 kL~~~~rkW~~~a~~~~~~~----~~~~~~vpkG~~aVyVG~e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~~G~L~I   87 (146)
                      +....+++|++.++..++..    +....++|+||||||||++++||+||++|||||+|++||++|||||||+++|+|+|
T Consensus         6 k~~~~~~k~~~~~~~~~~~~~~~~~~~~~~vp~G~~~VyVG~~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~i   85 (100)
T PF02519_consen    6 KSLASAKKWQSRARSKSSSSSSSRSSSESDVPKGHFAVYVGEERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTI   85 (100)
T ss_pred             HHHHHHHhhhhhhhhcccccccccccccCCCCCCeEEEEeCccceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEe
Confidence            33445677777765533321    12237899999999999999999999999999999999999999999999999999


Q ss_pred             cCChHHHHHHHHHhc
Q 040086           88 PCDESTFEEILRVVS  102 (146)
Q Consensus        88 PC~~~~Fe~vl~~i~  102 (146)
                      |||++.|++++|+|+
T Consensus        86 PC~~~~Fe~~l~~le  100 (100)
T PF02519_consen   86 PCDVVLFEHLLWLLE  100 (100)
T ss_pred             eCCHHHHHHHHHHhC
Confidence            999999999999986

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03220 uncharacterized protein; Provisional

Probab=100.00  E-value=5.3e-34  Score=210.91  Aligned_cols=86  Identities=44%  Similarity=0.809  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHhhcccCCCCCCCCCCCcEEEEecC----CceeeeeecccCCcHHHHHHHHHHHHhcCCCC-CCCeee
Q 040086           13 IRQMLRQWRRKARIAASASRATPSDVPAGHVAVCVGS----SSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPLTI   87 (146)
Q Consensus        13 L~~~~rkW~~~a~~~~~~~~~~~~~vpkG~~aVyVG~----e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-~G~L~I   87 (146)
                      .||++++.. .+...++ ++..+.+||+||||||||+    +++||+||++|||||+|++||++|||||||.| +|+|+|
T Consensus        12 ~k~~~~~~~-~~~~~~~-~~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~I   89 (105)
T PLN03220         12 TKQILKLNS-LANRNRT-SSSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTI   89 (105)
T ss_pred             HHHHHHHHh-hcccccc-cccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEe
Confidence            355555555 3322111 2345678999999999997    48999999999999999999999999999998 699999


Q ss_pred             cCChHHHHHHHHH
Q 040086           88 PCDESTFEEILRV  100 (146)
Q Consensus        88 PC~~~~Fe~vl~~  100 (146)
                      |||++.|++++..
T Consensus        90 PCd~~~F~~ll~s  102 (105)
T PLN03220         90 PCREEVFLDLIAS  102 (105)
T ss_pred             eCCHHHHHHHHHh
Confidence            9999999999863

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=3.9e-31  Score=196.49  Aligned_cols=69  Identities=51%  Similarity=0.924  Sum_probs=64.0

Q ss_pred             CCCCCCCCCcEEEEecC--CceeeeeecccCCcHHHHHHHHHHHHhcCCCC-CCCeeecCChHHHHHHHHHh
Q 040086           33 ATPSDVPAGHVAVCVGS--SSRRFIVRATYLNHPMFKKLLVQAEEEYGFSH-VGPLTIPCDESTFEEILRVV  101 (146)
Q Consensus        33 ~~~~~vpkG~~aVyVG~--e~~RfvVp~~~L~hP~F~~LL~~aeEEfG~~~-~G~L~IPC~~~~Fe~vl~~i  101 (146)
                      +.+.++|+||+|||||+  |++||+||++|||||+|++||++|||||||.+ +|+|+||||++.|++++..-
T Consensus        34 ~~~~~vpkGh~aVYVG~~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         34 TTSGLVPKGHVAVYVGEQMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCeEEEEECCCCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            45578999999999997  58999999999999999999999999999997 69999999999999999753

>PRK02899 adaptor protein; Provisional

Probab=80.72  E-value=1.4  Score=35.74  Aligned_cols=25  Identities=32%  Similarity=0.846  Sum_probs=21.5

Q ss_pred             cHHHHHHHHHHHHhcCCCCCCCeee
Q 040086           63 HPMFKKLLVQAEEEYGFSHVGPLTI   87 (146)
Q Consensus        63 hP~F~~LL~~aeEEfG~~~~G~L~I   87 (146)
                      +-+|.++|++|..|+||..+|||+|
T Consensus        38 e~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         38 HQLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHHhhhccCcccCCeEEE
Confidence            3467888999999999999999974

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=80.47  E-value=1.3  Score=30.61  Aligned_cols=58  Identities=21%  Similarity=0.218  Sum_probs=42.6

Q ss_pred             EEecCCceeeeeecccCC-c--HHHHHHHHHHHHhcCCCCCCCeeecCChHHHHHHHHHhcCC
Q 040086           45 VCVGSSSRRFIVRATYLN-H--PMFKKLLVQAEEEYGFSHVGPLTIPCDESTFEEILRVVSRP  104 (146)
Q Consensus        45 VyVG~e~~RfvVp~~~L~-h--P~F~~LL~~aeEEfG~~~~G~L~IPC~~~~Fe~vl~~i~~~  104 (146)
                      .-||  .++|.++.+.|. +  ..|..++........-..+|.+-|-++...|++||..+..+
T Consensus         3 lNVG--G~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    3 LNVG--GTIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEET--TEEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEC--CEEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            3465  588999988776 4  47888887653222223468999999999999999999984

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00