Citrus Sinensis ID: 040099
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
ID ![]() | Alignment graph ![]() | Length ![]() |
Definition ![]() |
RBH(Q2H) ![]() |
RBH(H2Q) ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1236 | 2.2.26 [Sep-21-2011] | |||||||
| Q9FWX7 | 1278 | ABC transporter B family | yes | no | 0.964 | 0.932 | 0.649 | 0.0 | |
| Q9M1Q9 | 1296 | ABC transporter B family | no | no | 0.957 | 0.912 | 0.640 | 0.0 | |
| O80725 | 1286 | ABC transporter B family | no | no | 0.962 | 0.925 | 0.629 | 0.0 | |
| Q9FWX8 | 1273 | ABC transporter B family | no | no | 0.963 | 0.935 | 0.624 | 0.0 | |
| Q9SYI3 | 1230 | ABC transporter B family | no | no | 0.957 | 0.961 | 0.617 | 0.0 | |
| Q9SYI2 | 1229 | ABC transporter B family | no | no | 0.959 | 0.965 | 0.622 | 0.0 | |
| Q9M0M2 | 1236 | ABC transporter B family | no | no | 0.950 | 0.950 | 0.578 | 0.0 | |
| Q9FHF1 | 1248 | ABC transporter B family | no | no | 0.960 | 0.951 | 0.555 | 0.0 | |
| Q8LPK2 | 1273 | ABC transporter B family | no | no | 0.955 | 0.927 | 0.444 | 0.0 | |
| Q9SGY1 | 1227 | ABC transporter B family | no | no | 0.944 | 0.951 | 0.444 | 0.0 |
| >sp|Q9FWX7|AB11B_ARATH ABC transporter B family member 11 OS=Arabidopsis thaliana GN=ABCB11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 1590 bits (4117), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 802/1235 (64%), Positives = 973/1235 (78%), Gaps = 43/1235 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL +FAD D +LM+ G+I A GNG+ +PF+ LLFGDL+DS G+N + V
Sbjct: 41 VPFYKLFAFADSSDVLLMICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVVS 100
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV KFVYL LG A+F QVACWMITGERQAARIRS YL+TILRQDI FFD E NTGEV
Sbjct: 101 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEV 160
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGKFIQ ++F+GGF++AF KGWLLTL ML+SIP L +AG
Sbjct: 161 VGRMSGDTVLIQDAMGEKVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAA 220
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M +V +S+ QAA + AATVV QTIGSIRTVASFTGE+QA + Y K + +YKSS+Q+
Sbjct: 221 MALIVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQ 280
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG F+ FS+Y L +W+G K+ILEKGY+GG V++VI V+ GSMSLGQ SPC
Sbjct: 281 GFSTGLGLGVMFFVFFSSYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPC 340
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
++AFAAGQAAA+K FE I RKP ID VNGK L+DIRGDIELKDV+FSYPARPDE+I +
Sbjct: 341 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFD 400
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+G AALVG SGSGKSTVISLI+RFYDP++G VLIDGVNLKEFQLKWIR KIG
Sbjct: 401 GFSLFIPSGATAALVGESGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIG 460
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL SSSI +NIAYGK +AT EEI+AA E ANA+ FI LPQGLDT VGEHG QL
Sbjct: 461 LVSQEPVLFSSSIMENIAYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQL 520
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDRVM+NRTTVIV+HRLS
Sbjct: 521 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLST 580
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKE------SEKSAVNNSD 638
+RNA++IAVI +GK+VEKG+HSELL++ GAY++LIRLQE K+ S S+ NS+
Sbjct: 581 VRNADMIAVIHRGKMVEKGSHSELLKDSEGAYSQLIRLQEINKDVKTSELSSGSSFRNSN 640
Query: 639 --------------SDNQPFASPKITTP----KQSETESDFPASEKAKMP-PDVSLSRLA 679
S + +TT S+ ++ P P VSL+R+A
Sbjct: 641 LKKSMEGTSSVGNSSRHHSLNVLGLTTGLDLGSHSQRAGQDETGTASQEPLPKVSLTRIA 700
Query: 680 YLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALG 739
LN PE+P LLLG +A+ NG I P+FG++++ ++ +P EL R S+ WA++FVALG
Sbjct: 701 ALNKPEIPVLLLGTVAAAINGAIFPLFGILISRVIEAFFKPAHELKRDSRFWAIIFVALG 760
Query: 740 AASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAA 799
SL+ SP MY FAVAG KLI+RIRSMCFEK V+MEV WFDE +S+G +GARLS+DA
Sbjct: 761 VTSLIVSPTQMYLFAVAGGKLIRRIRSMCFEKAVHMEVAWFDEPQNSSGTMGARLSADAT 820
Query: 800 LVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFS 859
L+R+LVGD LSL VQN A+A GL+IAF A W+LAL++L + PL+GI G +Q+K MKGFS
Sbjct: 821 LIRALVGDALSLAVQNVASAASGLIIAFTASWELALIILVMLPLIGINGFVQVKFMKGFS 880
Query: 860 ANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFG 919
A+A++ YEEASQVA+DAV SIRTVASFCAEEKVM++YKK+CEGPIK GI+QG +SG+GFG
Sbjct: 881 ADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYKKQCEGPIKDGIKQGFISGLGFG 940
Query: 920 LSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKS 979
SFF F YA +FY GA+LV+ + TF VF+VFFAL+M AIGISQ+S+ A D+SKAK
Sbjct: 941 FSFFILFCVYATSFYAGARLVEDGKTTFNNVFQVFFALTMAAIGISQSSTFAPDSSKAKV 1000
Query: 980 SAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPG 1039
+AAS+F +ID+ SKIDSS+ TG LENV G+++ +SF YP RP I++FRDLCLTI G
Sbjct: 1001 AAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPDIQIFRDLCLTIRAG 1060
Query: 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF 1099
KT+ALVGESGSGKSTVISLLQRFYDP SGHITLDGVE++KLQ+KWLRQQMG+V QEPVLF
Sbjct: 1061 KTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGVELKKLQLKWLRQQMGLVGQEPVLF 1120
Query: 1100 SDTIRANI------------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141
+DTIRANI AE+ANA+ FIS +Q+GYDT+VGERG+QLSGGQKQ
Sbjct: 1121 NDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGERGIQLSGGQKQ 1180
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
RVAIARAIVKEPKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA +
Sbjct: 1181 RVAIARAIVKEPKILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADV 1240
Query: 1202 IAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
IAVV G+I EKG+HE+LI + G+Y SL++ H T
Sbjct: 1241 IAVVKNGVIAEKGTHETLIKIEGGVYASLVQLHMT 1275
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M1Q9|AB21B_ARATH ABC transporter B family member 21 OS=Arabidopsis thaliana GN=ABCB21 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1572 bits (4071), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 792/1236 (64%), Positives = 971/1236 (78%), Gaps = 53/1236 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PFHKL +FAD D +LM++GTI A GNGL P + +LFGD++D GQN + +
Sbjct: 63 VPFHKLFAFADSFDIILMILGTIGAVGNGLGFPIMTILFGDVIDVFGQNQNSSDVSDKIA 122
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV+ KFVYL LG VA+ QV+ WMI+GERQA RIRS YL+TILRQDIAFFD E NTGEV
Sbjct: 123 KVALKFVYLGLGTLVAALLQVSGWMISGERQAGRIRSLYLQTILRQDIAFFDVETNTGEV 182
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGK IQ ++FIGGF+IAF +GWLLTL M+SSIP LV++G
Sbjct: 183 VGRMSGDTVLIQDAMGEKVGKAIQLVSTFIGGFVIAFTEGWLLTLVMVSSIPLLVMSGAA 242
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ ++ +AS+ Q + + AA VV QT+GSIRTVASFTGE+QA S YNK LV +Y++ V E
Sbjct: 243 LAIVISKMASRGQTSYAKAAVVVEQTVGSIRTVASFTGEKQAISNYNKHLVSAYRAGVFE 302
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG +IF Y L VWYG K+ILEKGY+GG V+ +IF VL GSMSLGQASPC
Sbjct: 303 GASTGLGLGTLNIVIFCTYALAVWYGGKMILEKGYTGGQVLIIIFAVLTGSMSLGQASPC 362
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
LSAFAAGQAAA+K FEAI RKPEID GK LDDIRGDIEL +VNFSYPARP+EQI
Sbjct: 363 LSAFAAGQAAAYKMFEAIKRKPEIDASDTTGKVLDDIRGDIELNNVNFSYPARPEEQIFR 422
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L I +G+ ALVG SGSGKSTV+SLI+RFYDPQ+GEV IDG+NLKEFQLKWIR KIG
Sbjct: 423 GFSLSISSGSTVALVGQSGSGKSTVVSLIERFYDPQSGEVRIDGINLKEFQLKWIRSKIG 482
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSI++NIAYGK +AT EEI+ A E ANAS FI LPQGLDT VGEHG QL
Sbjct: 483 LVSQEPVLFTSSIKENIAYGKENATVEEIRKATELANASKFIDKLPQGLDTMVGEHGTQL 542
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+A+ARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTV+V+HRLS
Sbjct: 543 SGGQKQRIAVARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVVVAHRLST 602
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQP- 643
+RNA++IAVI QGKIVEKG+HSELL +P GAY++LIRLQE K++E S +D Q
Sbjct: 603 VRNADMIAVIHQGKIVEKGSHSELLRDPEGAYSQLIRLQEDTKQTEDS------TDEQKL 656
Query: 644 ----------------------------FASPK-ITTPKQSETESDFPASEKAKMPPDVS 674
F P I T ++ E D S K VS
Sbjct: 657 SMESMKRSSLRKSSLSRSLSKRSSSFSMFGFPAGIDTNNEAIPEKDIKVSTPIK-EKKVS 715
Query: 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALM 734
R+A LN PE+P L+LG+IA++ NG+I+PIFG+++++++ +P E+L ++ WA++
Sbjct: 716 FFRVAALNKPEIPMLILGSIAAVLNGVILPIFGILISSVIKAFFKPPEQLKSDTRFWAII 775
Query: 735 FVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARL 794
F+ LG AS++ P F++AGCKL++RIRSMCFEKVV MEVGWFDE ++S+GAIGARL
Sbjct: 776 FMLLGVASMVVFPAQTIFFSIAGCKLVQRIRSMCFEKVVRMEVGWFDETENSSGAIGARL 835
Query: 795 SSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKS 854
S+DAA VR LVGD L+ VQN A+ GLVIAF A WQLA +VLA+ PL+G+ G+I MK
Sbjct: 836 SADAATVRGLVGDALAQTVQNLASVTAGLVIAFVASWQLAFIVLAMLPLIGLNGYIYMKF 895
Query: 855 MKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914
M GFSA+A+ MYEEASQVA+DAV SIRTVASFCAEEKVMK+YKKKCEGP++ GIRQG++S
Sbjct: 896 MVGFSADAKRMYEEASQVANDAVGSIRTVASFCAEEKVMKMYKKKCEGPMRTGIRQGIVS 955
Query: 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDA 974
GIGFG+SFF F +YA +FY GA+LVD + TF VFRVFFAL+M A+ ISQ+SSL+ D+
Sbjct: 956 GIGFGVSFFVLFSSYAASFYAGARLVDDGKTTFDSVFRVFFALTMAAVAISQSSSLSPDS 1015
Query: 975 SKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCL 1034
SKA ++AAS+F +ID+ SKID S+ +GR L+NV G+++ +SFKYP+RP +++F+DLCL
Sbjct: 1016 SKASNAAASIFAVIDRESKIDPSDESGRVLDNVKGDIELRHISFKYPSRPDVQIFQDLCL 1075
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
+I GKTIALVGESGSGKSTVI+LLQRFYDP SG ITLDGVEI+ LQ+KWLRQQ G+VSQ
Sbjct: 1076 SIRAGKTIALVGESGSGKSTVIALLQRFYDPDSGQITLDGVEIKTLQLKWLRQQTGLVSQ 1135
Query: 1095 EPVLFSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSGG 1138
EPVLF++TIRANI AE++NA+GFISGLQ+GYDT+VGERGVQLSGG
Sbjct: 1136 EPVLFNETIRANIAYGKGGDATETEIVSAAELSNAHGFISGLQQGYDTMVGERGVQLSGG 1195
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN 1198
QKQRVAIARAIVK+PK+LLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKN
Sbjct: 1196 QKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKN 1255
Query: 1199 AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234
A +IAVV G+IVEKG HE+LI+ K+G+Y SL++ H
Sbjct: 1256 ADVIAVVKNGVIVEKGKHETLINIKDGVYASLVQLH 1291
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O80725|AB4B_ARATH ABC transporter B family member 4 OS=Arabidopsis thaliana GN=ABCB4 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1556 bits (4030), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 780/1240 (62%), Positives = 974/1240 (78%), Gaps = 50/1240 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL +FAD D +LM++GT+ + GNGL P + LLFGDL+D+ G+N T T V
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTNT--TDKVS 103
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV+ KFV+L +G A+F Q++ WMI+GERQAARIRS YL+TILRQDIAFFD + NTGEV
Sbjct: 104 KVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEV 163
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGK IQ A+F+GGF+IAF +GWLLTL MLSSIP LV+AG +
Sbjct: 164 VGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGAL 223
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ ++ AS+ Q A + AATVV QTIGSIRTVASFTGE+QA S YNK LV +YK+ V E
Sbjct: 224 LAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIE 283
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG ++F +Y L VWYG KLIL+KGY+GG V+++I VL GSMSLGQ SPC
Sbjct: 284 GGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPC 343
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
LSAFAAGQAAA+K FE I R+P ID NGK LDDI+GDIELKDV F+YPARPDEQI
Sbjct: 344 LSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFR 403
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L I +GT ALVG SGSGKSTV+SLI+RFYDPQAG+VLIDG+NLKEFQLKWIR KIG
Sbjct: 404 GFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIG 463
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL ++SI+DNIAYGK AT EEI+AAAE ANAS F+ LPQGLDT VGEHG QL
Sbjct: 464 LVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQL 523
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+A+ARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTV+V+HRLS
Sbjct: 524 SGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLST 583
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPF 644
+RNA++IAVI QGKIVEKG+H+ELL++P GAY++LIRLQE K E +A S + F
Sbjct: 584 VRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSSIESF 643
Query: 645 -----------------ASPKITTPKQSETESDFPA---------------SEKAKMPPD 672
S + + + S FPA ++ P
Sbjct: 644 KQSSLRKSSLGRSLSKGGSSRGNSSRHSFNMFGFPAGIDGNVVQDQEEDDTTQPKTEPKK 703
Query: 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWA 732
VS+ R+A LN PE+P L+LG+I++ NG+I+PIFG+++++++ +P ++L + WA
Sbjct: 704 VSIFRIAALNKPEIPVLILGSISAAANGVILPIFGILISSVIKAFFQPPKKLKEDTSFWA 763
Query: 733 LMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGA 792
++F+ LG AS++ P + FA+AGCKL++RIRSMCFEKVV+MEVGWFDE ++S+G IGA
Sbjct: 764 IIFMVLGFASIIAYPAQTFFFAIAGCKLVQRIRSMCFEKVVHMEVGWFDEPENSSGTIGA 823
Query: 793 RLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQM 852
RLS+DAA +R LVGD+L+ VQN ++ + GL+IAF ACWQLA +VLA+ PL+ + G + M
Sbjct: 824 RLSADAATIRGLVGDSLAQTVQNLSSILAGLIIAFLACWQLAFVVLAMLPLIALNGFLYM 883
Query: 853 KSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912
K MKGFSA+A+ MY EASQVA+DAV SIRTVASFCAE+KVM +Y KKCEGP+K GIRQG+
Sbjct: 884 KFMKGFSADAKKMYGEASQVANDAVGSIRTVASFCAEDKVMNMYSKKCEGPMKNGIRQGI 943
Query: 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLAS 972
+SGIGFG SFF F +YA +FYVGA+LVD + TF VFRVFFAL+M A+ ISQ+SSL+
Sbjct: 944 VSGIGFGFSFFVLFSSYAASFYVGARLVDDGKTTFDSVFRVFFALTMAAMAISQSSSLSP 1003
Query: 973 DASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDL 1032
D+SKA +AAS+F ++D+ SKID S +GR L+NV G+++ VSFKYP RP +++F+DL
Sbjct: 1004 DSSKADVAAASIFAIMDRESKIDPSVESGRVLDNVKGDIELRHVSFKYPARPDVQIFQDL 1063
Query: 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092
CL+I GKT+ALVGESGSGKSTVI+LLQRFYDP SG ITLDGVEI+ L++KWLRQQ G+V
Sbjct: 1064 CLSIRAGKTVALVGESGSGKSTVIALLQRFYDPDSGEITLDGVEIKSLRLKWLRQQTGLV 1123
Query: 1093 SQEPVLFSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLS 1136
SQEP+LF++TIRANI AE++NA+GFISGLQ+GYDT+VGERG+QLS
Sbjct: 1124 SQEPILFNETIRANIAYGKGGDASESEIVSSAELSNAHGFISGLQQGYDTMVGERGIQLS 1183
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
GGQKQRVAIARAIVK+PK+LLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTI
Sbjct: 1184 GGQKQRVAIARAIVKDPKVLLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTI 1243
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
KNA +IAVV G+IVEKG H++LI+ K+G+Y SL++ H T
Sbjct: 1244 KNADVIAVVKNGVIVEKGKHDTLINIKDGVYASLVQLHLT 1283
|
Auxin influx transporter that mediates the transport of auxin in roots. Contributes to the basipetal transport in hypocotyls and root tips by establishing an auxin uptake sink in the root cap. Confers sensitivity to 1-N-naphthylphthalamic acid (NPA). Regulates the root elongation, the initiation of lateral roots and the development of root hairs. Can transports IAA, indole-3-propionic acid, NPA syringic acid, vanillic acid and some auxin metabolites, but not 2,4-D and 1-naphthaleneacetic acid. Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FWX8|AB12B_ARATH ABC transporter B family member 12 OS=Arabidopsis thaliana GN=ABCB12 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 1546 bits (4002), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 777/1244 (62%), Positives = 963/1244 (77%), Gaps = 53/1244 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+P +KL +FAD D LM+ G++ A GNG+C+P + LLFGDL+DS G+N + V
Sbjct: 28 VPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSFGKNQNNKDIVDVVS 87
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV KFVYL LG A+F QVACWMITGERQAA+IRS YL+TILRQDI FFD E NTGEV
Sbjct: 88 KVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQDIGFFDVETNTGEV 147
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+ IQDA+GEKVGKFIQ ++F+GGF +AF KGWLLTL ML+SIP L +AG
Sbjct: 148 VGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLVMLTSIPFLAMAGAA 207
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M LV +S+ QAA + AATVV QTIGSIRTVASFTGE+QA + Y K + +YKSS+Q+
Sbjct: 208 MALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKYITSAYKSSIQQ 267
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG +++ FS+Y L +W+G K+ILEKGY+GG V++VI V+ GSMSLGQ SPC
Sbjct: 268 GFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIIIVVAGSMSLGQTSPC 327
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
++AFAAGQAAA+K FE I RKP ID VNGK L DIRGDIELKDV+FSYPARPDE+I +
Sbjct: 328 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDVHFSYPARPDEEIFD 387
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+G AALVG SGSGKSTVI+LI+RFYDP+AGEVLIDG+NLKEFQLKWIR KIG
Sbjct: 388 GFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSKIG 447
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LV QEPVL SSSI +NIAYGK +AT +EI+ A E ANA+ FI NLPQGLDT VGEHG QL
Sbjct: 448 LVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQL 507
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPR+LLLDEATSALD+ES R+VQEALDRVM+NRTTV+V+HRLS
Sbjct: 508 SGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLST 567
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESE-------------- 630
+RNA++IAVI GK+VEKG+HSELL++ GAY++LIR QE K +
Sbjct: 568 VRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINKGHDAKPSDMASGSSFRN 627
Query: 631 ---------------KSAVNNSDSDNQ-----PFASPKITTPKQSETESDFPASEKAKMP 670
S+ NS + FA + + Q + + + + +
Sbjct: 628 SNLNISREGSVISGGTSSFGNSSRHHSLNVLGLFAGLDLGSGSQRVGQEETGTTSQEPLR 687
Query: 671 PDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKH 730
VSL+R+A LN PE+P LLLG + + NG I P+FG++++ ++ +P ++L + S+
Sbjct: 688 K-VSLTRIAALNKPEIPVLLLGTVVAAINGAIFPLFGILISRVIEAFFKPADQLKKDSRF 746
Query: 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAI 790
WA++FVALG SL+ SP MY FAVAG KLI+RI+SMCFEK V+MEV WFDE ++S+G +
Sbjct: 747 WAIIFVALGVTSLIVSPSQMYLFAVAGGKLIRRIQSMCFEKAVHMEVSWFDEPENSSGTM 806
Query: 791 GARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850
GARLS+DAAL+R+LVGD LSL VQN A+A GL+IAF A W+LAL++L + PL+GI G +
Sbjct: 807 GARLSTDAALIRALVGDALSLAVQNAASAASGLIIAFTASWELALIILVMLPLIGINGFL 866
Query: 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQ 910
Q+K MKGFSA+A++ YEEASQVA+DAV SIRTVASFCAEEKVM++Y K+CEGPIK G++Q
Sbjct: 867 QVKFMKGFSADAKSKYEEASQVANDAVGSIRTVASFCAEEKVMQMYNKQCEGPIKDGVKQ 926
Query: 911 GLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSL 970
G +SG+GFG SFF F YA +FY A+LV+ + TF +VF+VFFAL+M AIGISQ+S+
Sbjct: 927 GFISGLGFGFSFFILFCVYATSFYAAARLVEDGKTTFIDVFQVFFALTMAAIGISQSSTF 986
Query: 971 ASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFR 1030
A D+SKAK +AAS+F +ID+ SKIDSS+ TG LENV G+++ +SF YP RP I++FR
Sbjct: 987 APDSSKAKVAAASIFAIIDRKSKIDSSDETGTVLENVKGDIELRHLSFTYPARPGIQIFR 1046
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
DLCLTI GKT+ALVGESGSGKSTVISLLQRFYDP SG ITLDGVE++KLQ+KWLRQQMG
Sbjct: 1047 DLCLTIRAGKTVALVGESGSGKSTVISLLQRFYDPDSGQITLDGVELKKLQLKWLRQQMG 1106
Query: 1091 VVSQEPVLFSDTIRANI------------------AEMANANGFISGLQEGYDTLVGERG 1132
+V QEPVLF+DTIRANI AE+ANA+ FIS +Q+GYDT+VGE+G
Sbjct: 1107 LVGQEPVLFNDTIRANIAYGKGSEEAATESEIIAAAELANAHKFISSIQQGYDTVVGEKG 1166
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192
+QLSGGQKQRVAIARAIVKEPKILLLDEATSALD ESER+VQDALD+V+V+RTT+VVAHR
Sbjct: 1167 IQLSGGQKQRVAIARAIVKEPKILLLDEATSALDAESERLVQDALDRVIVNRTTVVVAHR 1226
Query: 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
LSTIKNA +IA+V G+I E G+HE+LI G+Y SL++ H T
Sbjct: 1227 LSTIKNADVIAIVKNGVIAENGTHETLIKIDGGVYASLVQLHMT 1270
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI3|AB5B_ARATH ABC transporter B family member 5 OS=Arabidopsis thaliana GN=ABCB5 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1531 bits (3963), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 753/1220 (61%), Positives = 953/1220 (78%), Gaps = 37/1220 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL F+D D +LM+VG+I A NG+C P + LLFG+L+D++G N + V
Sbjct: 13 VPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQNNEEIVERVS 72
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV VYL LGA A+F QVACWMITGERQAARIRS YL+TILRQDI FFD E+ TGEV
Sbjct: 73 KVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVEMTTGEV 132
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LI DA+GEKVGKFIQ ++F+GGF+IAF +GWLLTL ML+SIP L ++G
Sbjct: 133 VGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAMSGAA 192
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ +V +SQ+QAA + A+ VV QT+GSIRTVASFTGE+QA S Y + + +YKS+V++
Sbjct: 193 IAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKSNVKQ 252
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G TGLGLG + FS Y LG W+G ++IL KGY+GG V++V+ V+ S++LGQASPC
Sbjct: 253 GFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQASPC 312
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
L+AF AG+AAA+K FE I R+P ID +NGK L+DIRG+IEL+DV FSYPARP E++
Sbjct: 313 LTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKEEVFG 372
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF LLIP+GT ALVG SGSGKSTVISLI+RFYDP +G+VLIDGV+LKEFQLKWIR KIG
Sbjct: 373 GFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIG 432
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL SSSI +NI YGK AT EEIQAA++ ANA+ FI LP GL+T VGEHG QL
Sbjct: 433 LVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQL 492
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTVIV+HRLS
Sbjct: 493 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLST 552
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEK------------- 631
+RNA+IIAVI +GKIVE+G+HSELL++ GAY++L+RLQE KES++
Sbjct: 553 VRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKRLEISDGSISSGSS 612
Query: 632 SAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLL 691
N++ D+ F+ + + S S ++ VS +R+A LN PE+P L+L
Sbjct: 613 RGNNSTRQDDDSFSVLGLLAGQDSTKMSQ-------ELSQKVSFTRIAALNKPEIPILIL 665
Query: 692 GAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMY 751
G + NG I PIFG++ A ++ + EL R S+ W+++FV LG A+++ P + Y
Sbjct: 666 GTLVGAVNGTIFPIFGILFAKVIEAFFKAPHELKRDSRFWSMIFVLLGVAAVIVYPTTNY 725
Query: 752 CFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSL 811
FA+AG +LI+RIRSMCFEKVV+MEVGWFDE +S+GA+GARLS+DAAL+R+LVGD+L L
Sbjct: 726 LFAIAGGRLIRRIRSMCFEKVVHMEVGWFDEPGNSSGAMGARLSADAALIRTLVGDSLCL 785
Query: 812 LVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQ 871
V+N A+ V GL+IAF A W++A+++L I P +GI G+IQ+K MKGFSA+A+ YEEASQ
Sbjct: 786 SVKNVASLVTGLIIAFTASWEVAIIILVIIPFIGINGYIQIKFMKGFSADAKAKYEEASQ 845
Query: 872 VASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAV 931
VA+DAV SIRTVASFCAEEKVM++YKK+CE IK+GI+QGL+SG+GFG+SFF + YA
Sbjct: 846 VANDAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGFGISFFVLYSVYAS 905
Query: 932 TFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQV 991
FYVGA+LV + F +VF+VF AL++TA+GISQ SS A D+SK K +A S+F +ID++
Sbjct: 906 CFYVGARLVKAGRTNFNDVFQVFLALTLTAVGISQASSFAPDSSKGKGAAVSIFRIIDRI 965
Query: 992 SKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSG 1051
SKIDS + +G LENV G+++ +SF Y TRP ++VFRDLCL+I G+T+ALVGESGSG
Sbjct: 966 SKIDSRDESGMVLENVKGDIELCHISFTYQTRPDVQVFRDLCLSIRAGQTVALVGESGSG 1025
Query: 1052 KSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--- 1108
KSTVISLLQRFYDP SGHITLDGVE++KL++KWLRQQMG+V QEPVLF+DTIRANIA
Sbjct: 1026 KSTVISLLQRFYDPDSGHITLDGVELKKLRLKWLRQQMGLVGQEPVLFNDTIRANIAYGK 1085
Query: 1109 --------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154
E+ANA+ FIS +Q+GYDT+VGERG+QLSGGQKQRVAIARAIVKEPK
Sbjct: 1086 GGEEATEAEIIAASELANAHRFISSIQKGYDTVVGERGIQLSGGQKQRVAIARAIVKEPK 1145
Query: 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214
ILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA +IAVV G+I EKG
Sbjct: 1146 ILLLDEATSALDAESERVVQDALDRVMVNRTTIVVAHRLSTIKNADVIAVVKNGVIAEKG 1205
Query: 1215 SHESLISTKNGIYTSLIEPH 1234
+HE+LI+ + G+Y SL++ H
Sbjct: 1206 THETLINIEGGVYASLVQLH 1225
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SYI2|AB3B_ARATH ABC transporter B family member 3 OS=Arabidopsis thaliana GN=ABCB3 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 1501 bits (3886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 762/1225 (62%), Positives = 964/1225 (78%), Gaps = 39/1225 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL SF+D D +LM+VG+I A GNG+ P + LLFGDL+DSIGQN + + V
Sbjct: 8 VPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDIVEIVS 67
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV KFVYL LG A+F QVACWMITGERQAARIRS YL+TILRQDI FFD E +TGEV
Sbjct: 68 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVETSTGEV 127
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LI +A+GEKVGKFIQ A+F+GGF++AF KGWLLTL ML SIP L IAG
Sbjct: 128 VGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIAGAA 187
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M +V +S++QAA + A+TVV QT+GSIRTVASFTGE+QA Y + + +Y++SV++
Sbjct: 188 MPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRASVKQ 247
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G + GLGLG F+ F +Y L +W+G ++IL+KGY+GG+V++V+ V+ SMSLGQ +PC
Sbjct: 248 GFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQTTPC 307
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
L+AFAAG+AAA+K FE I RKP ID +NGK L+DIRG+IEL+DV FSYPARP E++
Sbjct: 308 LTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEEVFG 367
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF LLIP+G AALVG SGSGKS+VISLI+RFYDP +G VLIDGVNLKEFQLKWIR KIG
Sbjct: 368 GFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRGKIG 427
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL SSSI +NI YGK +AT EEIQAAA+ ANA++FI LP+GL+T VGEHG QL
Sbjct: 428 LVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQL 487
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDRVM++RTTVIV+HRLS
Sbjct: 488 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLST 547
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS--DSDNQ 642
+RNA++IAVI +GKIVE+G+HSELL++ GAY +LIRLQ+ KE ++ +N D
Sbjct: 548 VRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKRLESSNELRDRSIN 607
Query: 643 PFASPKITTP--------------KQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPA 688
+S I T +Q TE + E+++ +VS++R+A LN PE
Sbjct: 608 RGSSRNIRTRVHDDDSVSVLGLLGRQENTE---ISREQSR---NVSITRIAALNKPETTI 661
Query: 689 LLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPL 748
L+LG + NG I PIFG++ A ++ +P ++ R S+ W+++FV LG ASL+ P+
Sbjct: 662 LILGTLLGAVNGTIFPIFGILFAKVIEAFFKPPHDMKRDSRFWSMIFVLLGVASLIVYPM 721
Query: 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808
Y FAVAG +LI+RIR MCFEKVV+MEVGWFD+ ++S+G IG+RLS+DAAL+++LVGD+
Sbjct: 722 HTYLFAVAGGRLIQRIRVMCFEKVVHMEVGWFDDPENSSGTIGSRLSADAALIKTLVGDS 781
Query: 809 LSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEE 868
LSL V+N A AV GL+IAF A W+LA+++L + PL+GI G++Q+K +KGF+A+A+ YEE
Sbjct: 782 LSLSVKNAAAAVSGLIIAFTASWKLAVIILVMIPLIGINGYLQIKFIKGFTADAKAKYEE 841
Query: 869 ASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMA 928
ASQVA+DAV SIRTVASFCAEEKVM++YKK+CE IK+GI+QGL+SG+GFG+SFF +
Sbjct: 842 ASQVANDAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGFGISFFVLYSV 901
Query: 929 YAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLI 988
YA FYVGA+LV + F +VF+VF AL+MTAIGISQ SS A D+SKAK +AAS+FG+I
Sbjct: 902 YASCFYVGARLVKAGRTNFNDVFQVFLALTMTAIGISQASSFAPDSSKAKGAAASIFGII 961
Query: 989 DQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGES 1048
D S IDS + +G LENV G+++ +SF Y TRP +++FRDLC I G+T+ALVGES
Sbjct: 962 DGKSMIDSRDESGLVLENVKGDIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGES 1021
Query: 1049 GSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA 1108
GSGKSTVISLLQRFYDP SGHITLD VE++KLQ+KW+RQQMG+V QEPVLF+DTIR+NIA
Sbjct: 1022 GSGKSTVISLLQRFYDPDSGHITLDRVELKKLQLKWVRQQMGLVGQEPVLFNDTIRSNIA 1081
Query: 1109 -----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151
E+ANA+GFIS +Q+GYDT+VGERG+QLSGGQKQRVAIARAIVK
Sbjct: 1082 YGKGGDEASEAEIIAAAELANAHGFISSIQQGYDTVVGERGIQLSGGQKQRVAIARAIVK 1141
Query: 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
EPKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA +IAVV G+IV
Sbjct: 1142 EPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIV 1201
Query: 1212 EKGSHESLISTKNGIYTSLIEPHTT 1236
EKG+HE+LI+ + G+Y SL++ H +
Sbjct: 1202 EKGTHETLINIEGGVYASLVQLHIS 1226
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9M0M2|AB9B_ARATH ABC transporter B family member 9 OS=Arabidopsis thaliana GN=ABCB9 PE=3 SV=2 | Back alignment and function description |
|---|
Score = 1385 bits (3585), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 718/1242 (57%), Positives = 915/1242 (73%), Gaps = 67/1242 (5%)
Query: 42 NGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIH 101
N ++ F KL SFAD D VLM VGTIAA GNGL PF+ L+FG L+++ G + +
Sbjct: 13 NQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGTTDPDHM-VR 71
Query: 102 GVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINT 161
V KV+ KF+YLA+ + V +F QV+CWM+TGERQ+A IR YL+TILRQDI +FD E NT
Sbjct: 72 EVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILRQDIGYFDTETNT 131
Query: 162 GEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIA 221
GEV+GR+SGDT+LIQDA+GEKVGKF Q +F+GGF IAF+KG LL + S IP +VIA
Sbjct: 132 GEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAGVLCSCIPLIVIA 191
Query: 222 GVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSS 281
G M ++ +A + Q A + A VV QT+G+IRTV +FTGE+QA+ Y L +YK+
Sbjct: 192 GAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEKYESKLEIAYKTV 251
Query: 282 VQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQA 341
VQ+GL +G GLG + +IF +YGL VWYGAKLI+EKGY+GG V++VIF VL G MSLGQ
Sbjct: 252 VQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIFAVLTGGMSLGQT 311
Query: 342 SPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQ 401
SP L+AFAAG+AAAFK FE I R P+ID ++G L+DIRGDIELKDV F YPARPD Q
Sbjct: 312 SPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFRYPARPDVQ 371
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461
I GF L +PNG ALVG SGSGKSTVISLI+RFYDP++G+VLID ++LK+ QLKWIR
Sbjct: 372 IFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRS 431
Query: 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521
KIGLVSQEPVL +++I++NIAYGK AT +EI+ A E ANA+ FI LPQGLDT VGEHG
Sbjct: 432 KIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHG 491
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHR 581
Q+SGGQKQR+AIARA++K+P+ILLLDEATSALD+ES R+VQ+AL +M NRTTV+V+HR
Sbjct: 492 TQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHR 551
Query: 582 LSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCK----ESEK--SAVN 635
L+ IR A++IAV+ QGKIVEKGTH E++++P GAY++L+RLQE K ESE+ ++++
Sbjct: 552 LTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEEATESERPETSLD 611
Query: 636 NSDSDNQPFAS-------------------------PKITTPKQSETESDFPASEKAKMP 670
S + +S P + + E E + E
Sbjct: 612 VERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFPGVNVNQTDEMEDE----ENNVRH 667
Query: 671 PDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKH 730
VSL RLA+LN PE+P L+LG+IA+M +G + PIFG++L++ +N EP + L + S
Sbjct: 668 KKVSLKRLAHLNKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSSINMFYEPAKILKKDSHF 727
Query: 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAI 790
WAL+++ALG + + P+ Y F +AG KLIKRIRSMCF+KVV+ E+ WFD+ +S
Sbjct: 728 WALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVHQEISWFDDTANS---- 783
Query: 791 GARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850
RSLVGD L+L+VQN AT GL+IAF A W LAL+VLA+ P + I G+
Sbjct: 784 -----------RSLVGDALALIVQNIATVTTGLIIAFTANWILALIVLALSPFIVIQGYA 832
Query: 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQ 910
Q K + GFSA+A+ MYEEASQVA+DAVSSIRTVASFCAEEKVM LY++KC+GP K G+R
Sbjct: 833 QTKFLTGFSADAKAMYEEASQVANDAVSSIRTVASFCAEEKVMDLYQQKCDGPKKNGVRL 892
Query: 911 GLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSL 970
GL+SG GFG SFFF + V F GA L+ +ATF EVF+VFFAL++ AIG+SQTS++
Sbjct: 893 GLLSGAGFGFSFFFLYCINCVCFVSGAGLIQIGKATFGEVFKVFFALTIMAIGVSQTSAM 952
Query: 971 ASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFR 1030
A D++KAK SAAS+F ++D KIDSS G TL+NV G+++F VSF+YP RP +++FR
Sbjct: 953 APDSNKAKDSAASIFDILDSTPKIDSSSDEGTTLQNVNGDIEFRHVSFRYPMRPDVQIFR 1012
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
DLCLTIP GKT+ALVGESGSGKSTVIS+++RFY+P SG I +D VEIQ ++ WLRQQMG
Sbjct: 1013 DLCLTIPSGKTVALVGESGSGKSTVISMIERFYNPDSGKILIDQVEIQTFKLSWLRQQMG 1072
Query: 1091 VVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQ 1134
+VSQEP+LF++TIR+NIA + ANA+ FIS L +GYDT VGERGVQ
Sbjct: 1073 LVSQEPILFNETIRSNIAYGKTGGATEEEIIAAAKAANAHNFISSLPQGYDTSVGERGVQ 1132
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGGQKQR+AIARAI+K+PKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRL+
Sbjct: 1133 LSGGQKQRIAIARAILKDPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLT 1192
Query: 1195 TIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
TIKNA +IAVV G+I EKG HE+L+ G Y SL+ H +
Sbjct: 1193 TIKNADVIAVVKNGVIAEKGRHETLMKISGGAYASLVTLHMS 1234
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FHF1|AB7B_ARATH ABC transporter B family member 7 OS=Arabidopsis thaliana GN=ABCB7 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 1363 bits (3528), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 681/1226 (55%), Positives = 903/1226 (73%), Gaps = 39/1226 (3%)
Query: 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGV 103
RI F+KL +FAD D VLM++GT++A NGL PF+++L G L++ G + V
Sbjct: 17 RIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFG-FSDHDHVFKEV 75
Query: 104 LKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGE 163
KV+ KF+YLA AGV SF QV+CWM+TGERQ+ RIR YL+TILRQDI FFD E NTGE
Sbjct: 76 SKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNTGE 135
Query: 164 VVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223
V+GR+SGDT+LIQD++GEKVGKF Q +SF+GGF +AF G LTL +L +P +V G
Sbjct: 136 VIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGTGG 195
Query: 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283
M ++ A + Q A + A VV Q +GSIRTV +FTGE+Q+ Y K L +YKS V+
Sbjct: 196 AMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSMVK 255
Query: 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASP 343
+GL +GLG+G + +++ YG +WYGA+ I+EKGY+GG VM+VI +L G M+LGQ P
Sbjct: 256 QGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQTLP 315
Query: 344 CLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQIL 403
L++FAAG AAA+K FE I RKP+ID ++G+ L++I+GDIEL+DV F YPARPD QI
Sbjct: 316 SLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQIF 375
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463
GF L +PNG ALVG SGSGKSTVISLI+RFYDP++GEVLIDG++LK+FQ+KWIR KI
Sbjct: 376 VGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRSKI 435
Query: 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523
GLVSQEP+L +++IR+NI YGK A+ +EI+ A + ANAS+FI LPQGL+T VGEHG Q
Sbjct: 436 GLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHGTQ 495
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGGQKQR+AIARA++K+P+ILLLDEATSALD+ES R+VQ+AL ++M++RTTV+V+HRL+
Sbjct: 496 LSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHRLT 555
Query: 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETC-------KESEKS---- 632
IR A++IAV+QQGK++EKGTH E++++P G Y++L+RLQE KE EK
Sbjct: 556 TIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEEAIDKEPEKCEMSL 615
Query: 633 AVNNSDSDN--------QPFASPKITTPKQSETESDFPASEKA---KMPPDVSLSRLAYL 681
+ +SDS N P P + + Q+E + +S K K +VSL RLA+L
Sbjct: 616 EIESSDSQNGIHSGTLTSPSGLPGVISLDQTEEFHENISSTKTQTVKKGKEVSLRRLAHL 675
Query: 682 NSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAA 741
N PE+ LLLG++A++ +GI+ P+ G++L+ + EP +L S WAL+FVALG
Sbjct: 676 NKPEISVLLLGSLAAVIHGIVFPVQGLLLSRTIRIFFEPSNKLKNDSLFWALIFVALGLT 735
Query: 742 SLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALV 801
L+ PL Y FA+AG KLIKRIRS+ F++V++ ++ WFD+ +S+G IGARLS+DA+ V
Sbjct: 736 DLIVIPLQNYLFAIAGAKLIKRIRSLSFDRVLHQDISWFDDTKNSSGVIGARLSTDASTV 795
Query: 802 RSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSAN 861
+S+VGD L L++QN AT + +IAF A W LAL+ L + P++ G+ Q+K + GF A
Sbjct: 796 KSIVGDVLGLIMQNMATIIGAFIIAFTANWLLALMALLVAPVMFFQGYYQIKFITGFGAK 855
Query: 862 AENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLS 921
A YEEASQVASDAVSSIRTVASFCAE+KVM LY++KC+ P + G + GL+SG+ +G S
Sbjct: 856 ARGKYEEASQVASDAVSSIRTVASFCAEDKVMDLYQEKCDEPKQQGFKLGLVSGLCYGGS 915
Query: 922 FFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSA 981
+ ++ +V F G+ L+ +++ATF E F+VFFAL++TA+G++QTS++A D +KAK SA
Sbjct: 916 YLALYVIESVCFLGGSWLIQNRRATFGEFFQVFFALTLTAVGVTQTSTMAPDINKAKDSA 975
Query: 982 ASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKT 1041
AS+F ++D KIDSS G L V G+++ VSF+YP RP I++F DLCLTI G+T
Sbjct: 976 ASIFDILDSKPKIDSSSEKGTILPIVHGDIELQHVSFRYPMRPDIQIFSDLCLTISSGQT 1035
Query: 1042 IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101
+ALVGESGSGKSTVISLL+RFYDP SG I LD VEIQ L++ WLR+QMG+VSQEPVLF++
Sbjct: 1036 VALVGESGSGKSTVISLLERFYDPDSGKILLDQVEIQSLKLSWLREQMGLVSQEPVLFNE 1095
Query: 1102 TIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAI 1145
TI +NI A+ AN + FIS L +GY+T VGERGVQLSGGQKQR+AI
Sbjct: 1096 TIGSNIAYGKIGGATEEEIITAAKAANVHNFISSLPQGYETSVGERGVQLSGGQKQRIAI 1155
Query: 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205
ARAI+K+PKILLLDEATSALD ESERVVQDALDQVMV+RTT+VVAH L+TIK+A +IAVV
Sbjct: 1156 ARAILKDPKILLLDEATSALDAESERVVQDALDQVMVNRTTVVVAHLLTTIKDADMIAVV 1215
Query: 1206 SQGMIVEKGSHESLISTKNGIYTSLI 1231
G+I E G HE+L+ G Y SL+
Sbjct: 1216 KNGVIAESGRHETLMEISGGAYASLV 1241
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q8LPK2|AB2B_ARATH ABC transporter B family member 2 OS=Arabidopsis thaliana GN=ABCB2 PE=1 SV=3 | Back alignment and function description |
|---|
Score = 1030 bits (2663), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1214 (44%), Positives = 778/1214 (64%), Gaps = 33/1214 (2%)
Query: 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIG-QNATKTLAIHG 102
++ KL SFAD D VLM +G++ A +G VP + FG L++ IG A H
Sbjct: 59 KVSLLKLFSFADFYDCVLMTLGSVGACIHGASVPIFFIFFGKLINIIGLAYLFPKQASHR 118
Query: 103 VLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTG 162
V K S FVYL++ +S+ +VACWM TGERQAA++R YL ++L QDI+ FD E +TG
Sbjct: 119 VAKYSLDFVYLSVAILFSSWLEVACWMHTGERQAAKMRRAYLRSMLSQDISLFDTEASTG 178
Query: 163 EVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAG 222
EV+ I+ D L++QDA+ EKVG F+ + + FI GF I F W ++L LS +P + +AG
Sbjct: 179 EVISAITSDILVVQDALSEKVGNFLHYISRFIAGFAIGFTSVWQISLVTLSIVPLIALAG 238
Query: 223 VVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282
+ + L ++ + + A + + IG++RTV +FTGE++A +Y + L +YK
Sbjct: 239 GIYAFVAIGLIARVRKSYIKAGEIAEEVIGNVRTVQAFTGEERAVRLYREALENTYKYGR 298
Query: 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQAS 342
+ GL GLGLG+ ++F ++ L VW+ + ++ + GG + + V+I +SLGQA+
Sbjct: 299 KAGLTKGLGLGSMHCVLFLSWALLVWFTSVVVHKDIADGGKSFTTMLNVVIAGLSLGQAA 358
Query: 343 PCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQI 402
P +SAF +AAA+ F+ I R +G+KL + G I+ KD FSYP+RPD I
Sbjct: 359 PDISAFVRAKAAAYPIFKMIERNTVTKTSAKSGRKLGKVDGHIQFKDATFSYPSRPDVVI 418
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
+ L IP G I ALVG SGSGKSTVISLI+RFY+P +G VL+DG N+ E +KW+R +
Sbjct: 419 FDRLNLAIPAGKIVALVGGSGSGKSTVISLIERFYEPISGAVLLDGNNISELDIKWLRGQ 478
Query: 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
IGLV+QEP L +++IR+NI YGK AT EEI AA+ + A FI NLP+G +T VGE GI
Sbjct: 479 IGLVNQEPALFATTIRENILYGKDDATAEEITRAAKLSEAISFINNLPEGFETQVGERGI 538
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582
QLSGGQKQR+AI+RA++K+P ILLLDEATSALD+ES + VQEALDRVM+ RTTV+V+HRL
Sbjct: 539 QLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTVVVAHRL 598
Query: 583 SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQ 642
S +RNA+IIAV+ +GKIVE G H L+ NP GAY+ L+RLQET ++N + S
Sbjct: 599 STVRNADIIAVVHEGKIVEFGNHENLISNPDGAYSSLLRLQETASLQRNPSLNRTLSRPH 658
Query: 643 PFASPKITTPKQSETESDFPASEKAKMPPD---------VSLSRLAYLNSPEVPALLLGA 693
+ + S T S F + ++ PD V++ RL + P+ + G
Sbjct: 659 SIKYSR----ELSRTRSSFCSERESVTRPDGADPSKKVKVTVGRLYSMIRPDWMYGVCGT 714
Query: 694 IASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753
I + G +P+F + ++ + + +E + K A++F +L+ + CF
Sbjct: 715 ICAFIAGSQMPLFALGVSQALVSYYSGWDETQKEIKKIAILFCCASVITLIVYTIEHICF 774
Query: 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLV 813
G +L R+R F ++ E+GWFDE D+++ + +RL SDA L++++V D ++L+
Sbjct: 775 GTMGERLTLRVRENMFRAILKNEIGWFDEVDNTSSMLASRLESDATLLKTIVVDRSTILL 834
Query: 814 QNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK-SMKGFSANAENMYEEASQV 872
QN V +IAF W+L L+VLA +PL+ I+GHI K M+G+ + Y +A+ +
Sbjct: 835 QNLGLVVTSFIIAFILNWRLTLVVLATYPLV-ISGHISEKLFMQGYGGDLNKAYLKANML 893
Query: 873 ASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVT 932
A ++VS+IRTVA+FCAEEK+++LY ++ P K+ R+G ++G+ +G+S FF F +Y +
Sbjct: 894 AGESVSNIRTVAAFCAEEKILELYSRELLEPSKSSFRRGQIAGLFYGVSQFFIFSSYGLA 953
Query: 933 FYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992
+ G+ L+D A F V + F L +TA+ + +T +LA D K ASVF ++D+ +
Sbjct: 954 LWYGSTLMDKGLAGFKSVMKTFMVLIVTALAMGETLALAPDLLKGNQMVASVFEILDRKT 1013
Query: 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGK 1052
+I T L NV G ++ V F YP+RP + +FRD L + GK++ALVG+SGSGK
Sbjct: 1014 QIVGE--TSEELNNVEGTIELKGVHFSYPSRPDVVIFRDFDLIVRAGKSMALVGQSGSGK 1071
Query: 1053 STVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----- 1107
S+VISL+ RFYDP++G + ++G +I+KL +K LR+ +G+V QEP LF+ TI NI
Sbjct: 1072 SSVISLILRFYDPTAGKVMIEGKDIKKLDLKALRKHIGLVQQEPALFATTIYENILYGNE 1131
Query: 1108 ----------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157
A +ANA+ FI+ L EGY T VGERGVQ+SGGQ+QR+AIARAI+K P ILL
Sbjct: 1132 GASQSEVVESAMLANAHSFITSLPEGYSTKVGERGVQMSGGQRQRIAIARAILKNPAILL 1191
Query: 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217
LDEATSALD+ESERVVQ ALD++M +RTT+VVAHRLSTIKNA I+V+ G IVE+GSH
Sbjct: 1192 LDEATSALDVESERVVQQALDRLMANRTTVVVAHRLSTIKNADTISVLHGGKIVEQGSHR 1251
Query: 1218 SLISTKNGIYTSLI 1231
L+ K+G Y LI
Sbjct: 1252 KLVLNKSGPYFKLI 1265
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SGY1|AB10B_ARATH ABC transporter B family member 10 OS=Arabidopsis thaliana GN=ABCB10 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 1022 bits (2643), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 540/1214 (44%), Positives = 784/1214 (64%), Gaps = 47/1214 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIG------QNATKTL 98
+ F KL SFAD D VLM +G+I A +G VP + FG L++ IG Q A+
Sbjct: 24 VSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINIIGLAYLFPQEAS--- 80
Query: 99 AIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKE 158
H V K S FVYL++ +S+ +VACWM TGERQAA+IR YL ++L QDI+ FD E
Sbjct: 81 --HKVAKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAYLRSMLSQDISLFDTE 138
Query: 159 INTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPL 218
I+TGEV+ I+ + L++QDAI EKVG F+ F + FI GF I F W ++L LS +P +
Sbjct: 139 ISTGEVISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPFI 198
Query: 219 VIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSY 278
+AG + + L + + + A + + IG++RTV +FTGE++A S Y L +Y
Sbjct: 199 ALAGGIYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGEEKAVSSYQGALRNTY 258
Query: 279 KSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYS-GGDVMSVIFGVLIGSMS 337
+ GLA GLGLG+ F++F ++ L +W+ +++ KG + GG+ + + V+I +S
Sbjct: 259 NYGRKAGLAKGLGLGSLHFVLFLSWALLIWF-TSIVVHKGIANGGESFTTMLNVVIAGLS 317
Query: 338 LGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPAR 397
LGQA+P +S F AAA+ F+ I R E G+KL ++ GDI KDV F+YP+R
Sbjct: 318 LGQAAPDISTFMRASAAAYPIFQMIERNTEDK----TGRKLGNVNGDILFKDVTFTYPSR 373
Query: 398 PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457
PD I + +IP G + ALVG SGSGKST+ISLI+RFY+P G V++DG +++ LK
Sbjct: 374 PDVVIFDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLK 433
Query: 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV 517
W+R IGLV+QEPVL +++IR+NI YGK AT EEI AA+ + A FI NLP+G +T V
Sbjct: 434 WLRGHIGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQV 493
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI 577
GE GIQLSGGQKQR++I+RA++K+P ILLLDEATSALD+ES ++VQEALDRVM+ RTTV+
Sbjct: 494 GERGIQLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVV 553
Query: 578 VSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS 637
V+HRLS +RNA+IIAV+ GKI+E G+H EL+ NP GAY+ L+R+QE + +N++
Sbjct: 554 VAHRLSTVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAASPN----LNHT 609
Query: 638 DS---DNQPFASPKITTPKQSETES-DFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGA 693
S +P IT S +S + P + K V++ RL + P+ L G
Sbjct: 610 PSLPVSTKPLPELPITETTSSIHQSVNQPDTTKQ---AKVTVGRLYSMIRPDWKYGLCGT 666
Query: 694 IASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753
+ S G +P+F + +A + + E K +++F +++ + F
Sbjct: 667 LGSFIAGSQMPLFALGIAQALVSYYMDWETTQNEVKRISILFCCGSVITVIVHTIEHTTF 726
Query: 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLV 813
+ G +L R+R F ++ E+GWFD+ D+++ + +RL SDA L+R++V D ++L+
Sbjct: 727 GIMGERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRTIVVDRSTILL 786
Query: 814 QNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK-SMKGFSANAENMYEEASQV 872
+N V +I+F W+L L+VLA +PL+ I+GHI K M+G+ N Y +A+ +
Sbjct: 787 ENLGLVVTAFIISFILNWRLTLVVLATYPLI-ISGHISEKIFMQGYGGNLSKAYLKANML 845
Query: 873 ASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVT 932
A +++S+IRTV +FCAEEKV+ LY K+ P + R+G M+GI +G+S FF F +Y +
Sbjct: 846 AGESISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVSQFFIFSSYGLA 905
Query: 933 FYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992
+ G+ L++ ++F V + F L +TA+ + + +LA D K SVF L+D+ +
Sbjct: 906 LWYGSILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVSVFELLDRRT 965
Query: 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGK 1052
++ TG L NV G ++ V F YP+RP + +F D L +P GK++ALVG+SGSGK
Sbjct: 966 QVVGD--TGEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGK 1023
Query: 1053 STVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----- 1107
S+V+SL+ RFYDP++G I +DG +I+KL++K LR+ +G+V QEP LF+ TI NI
Sbjct: 1024 SSVLSLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKE 1083
Query: 1108 ----------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157
A++ANA+ FIS L EGY T VGERG+Q+SGGQ+QR+AIARA++K P+ILL
Sbjct: 1084 GASESEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILL 1143
Query: 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217
LDEATSALD+ESERVVQ ALD++M DRTT+VVAHRLSTIKN+ +I+V+ G I+E+GSH
Sbjct: 1144 LDEATSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHN 1203
Query: 1218 SLISTKNGIYTSLI 1231
L+ KNG Y+ LI
Sbjct: 1204 ILVENKNGPYSKLI 1217
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1236 | ||||||
| 225437787 | 1297 | PREDICTED: ABC transporter B family memb | 0.961 | 0.916 | 0.664 | 0.0 | |
| 224130858 | 1294 | multidrug/pheromone exporter, MDR family | 0.964 | 0.921 | 0.656 | 0.0 | |
| 224064756 | 1224 | multidrug/pheromone exporter, MDR family | 0.947 | 0.956 | 0.665 | 0.0 | |
| 14715462 | 1289 | CjMDR1 [Coptis japonica] | 0.964 | 0.924 | 0.661 | 0.0 | |
| 224130846 | 1294 | multidrug/pheromone exporter, MDR family | 0.964 | 0.921 | 0.654 | 0.0 | |
| 384080871 | 1292 | ABC protein [Coptis japonica] | 0.996 | 0.953 | 0.643 | 0.0 | |
| 356499544 | 1282 | PREDICTED: ABC transporter B family memb | 0.961 | 0.926 | 0.648 | 0.0 | |
| 359477265 | 1273 | PREDICTED: ABC transporter B family memb | 0.991 | 0.962 | 0.647 | 0.0 | |
| 356533485 | 1282 | PREDICTED: ABC transporter B family memb | 0.989 | 0.953 | 0.629 | 0.0 | |
| 255556604 | 1266 | multidrug resistance protein 1, 2, putat | 0.974 | 0.951 | 0.650 | 0.0 |
| >gi|225437787|ref|XP_002273987.1| PREDICTED: ABC transporter B family member 11 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1644 bits (4258), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 827/1245 (66%), Positives = 998/1245 (80%), Gaps = 56/1245 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PFHKL SFAD D +LM+ GTI A GNG+C+P +A+LFGDL+DS GQN + V
Sbjct: 53 VPFHKLFSFADSTDMLLMITGTIGAAGNGICMPLMAILFGDLIDSFGQNQNNKDVVDIVS 112
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KVS KFVYLA+GAG+A+FFQVACWM+TGERQAARIRS YL+TILRQD+AFFDKE NTGEV
Sbjct: 113 KVSLKFVYLAVGAGIAAFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEV 172
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
+GR+SGDT+LIQDA+GEKVGKFIQ ++FIGGF+IAF KGWLLTL MLSSIP LVIAG
Sbjct: 173 IGRMSGDTVLIQDAMGEKVGKFIQLVSTFIGGFIIAFIKGWLLTLVMLSSIPLLVIAGGA 232
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M + +A++ Q A + AATVV QTIGSIRTVASFTGE+QA + YN+ LV +YKS V E
Sbjct: 233 MSLFLSKMATRGQNAYAKAATVVEQTIGSIRTVASFTGEKQAVTKYNQFLVNAYKSGVFE 292
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
GLA GLGLG +FIIF++Y L VW+GAK+ILEKGY+GG V++VI VL GSMSLGQASPC
Sbjct: 293 GLAAGLGLGTVMFIIFASYALAVWFGAKMILEKGYTGGTVLNVIIAVLTGSMSLGQASPC 352
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
+SAFAAGQAAAFK F+ I+RKPEID+ GKKL+DI+G+IEL+DV FSYPARPDEQI +
Sbjct: 353 MSAFAAGQAAAFKMFQTIHRKPEIDVSDTKGKKLEDIQGEIELRDVYFSYPARPDEQIFS 412
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+GT AALVG SGSGKSTVISLI+RFYDP AGEVLIDG+NLKEFQL+WIR KIG
Sbjct: 413 GFSLSIPSGTTAALVGQSGSGKSTVISLIERFYDPLAGEVLIDGINLKEFQLRWIRGKIG 472
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSIRDNIAYGK AT EEI+AAAE ANAS FI LPQGLDT VGEHG QL
Sbjct: 473 LVSQEPVLFTSSIRDNIAYGKEGATIEEIRAAAELANASKFIDKLPQGLDTMVGEHGTQL 532
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQRVAIARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTT+IV+HRLS
Sbjct: 533 SGGQKQRVAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTIIVAHRLST 592
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPF 644
+RNA++I VI +GK+VEKG+H+ELL++P GAY++LIRLQE KESE A +DS ++P
Sbjct: 593 VRNADMIGVIHRGKMVEKGSHTELLKDPEGAYSQLIRLQEVNKESENQA---TDSQDRPD 649
Query: 645 ASPKI------------------TTPKQSETES-------------------DFPASEKA 667
S + + P S S D A +
Sbjct: 650 GSIEFGRQSSQRMSFLRSISRGSSGPGNSSRHSFSVSFGLPTGLGLPDNAIADAEAPRSS 709
Query: 668 KMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRH 727
+ PP+V + RLAYLN PE+P LLLG +A++ NG I+PIFG+++++++ T EP +L +
Sbjct: 710 EQPPEVPIRRLAYLNKPEIPVLLLGTVAAIVNGTILPIFGILISSVIKTFYEPPHQLRKD 769
Query: 728 SKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHST 787
S WAL+F+ LG S L P Y F+VAGCKLI+R+RSMCFEKVV+MEVGWFD+ +HS+
Sbjct: 770 SNFWALIFLVLGVVSFLAFPARTYLFSVAGCKLIQRVRSMCFEKVVHMEVGWFDQPEHSS 829
Query: 788 GAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGIT 847
GAIGARLS+DAA +R+LVGD L+ +VQN A+A+ GL IAF A WQLA ++LA+ PL+G+
Sbjct: 830 GAIGARLSADAATIRALVGDALAQVVQNAASAIAGLAIAFAASWQLAFIILALIPLIGLN 889
Query: 848 GHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAG 907
G++Q+K +KGFSA+A+ MYEEASQVA+DAV SIRTVASFCAEEKVM LYKKKCEGP++ G
Sbjct: 890 GYVQIKFLKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMDLYKKKCEGPMRTG 949
Query: 908 IRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQT 967
IRQGL+SGIGFG+SFF F YA+ FY GA+LV+ + TF +VFRVFFAL+M +GISQ+
Sbjct: 950 IRQGLVSGIGFGVSFFLLFCVYALCFYAGARLVEAGKTTFGDVFRVFFALTMATVGISQS 1009
Query: 968 SSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIE 1027
SS + D+SKAKS+AAS+F +ID+ S ID S+ +G LENV GE++ +SFKYPTRP I+
Sbjct: 1010 SSFSPDSSKAKSAAASIFTIIDRKSTIDPSDESGTKLENVKGEIELRHISFKYPTRPDIQ 1069
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+FRDL LTI GKT+ALVGESGSGKSTVI+LLQRFYDP SGHITLDGV+IQ LQ++WLRQ
Sbjct: 1070 IFRDLSLTIRSGKTVALVGESGSGKSTVIALLQRFYDPDSGHITLDGVDIQSLQLRWLRQ 1129
Query: 1088 QMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGER 1131
QMG+VSQEPVLF+DTIRANIA E+ANA+ FISGLQ+GYDT+VGER
Sbjct: 1130 QMGLVSQEPVLFNDTIRANIAYGKEGHTTEAEVIAASELANAHKFISGLQQGYDTMVGER 1189
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191
G+QLSGGQKQRVAIARA+VK PKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAH
Sbjct: 1190 GIQLSGGQKQRVAIARAMVKSPKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAH 1249
Query: 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
RLSTIK A +IAVV G+IVEKG HE+LI+ K+G Y SLI H +
Sbjct: 1250 RLSTIKGADVIAVVKNGVIVEKGKHETLINIKDGFYASLIALHMS 1294
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130858|ref|XP_002320942.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861715|gb|EEE99257.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1630 bits (4222), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 815/1241 (65%), Positives = 984/1241 (79%), Gaps = 49/1241 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF KL SFAD D +LM++GTI A GNG P +++LFGDL++S GQN + V
Sbjct: 50 VPFLKLFSFADSTDILLMILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDSVT 109
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV+ FVYL +G+ VA+F QVACWM+TGERQAARIR YL+TIL+QD+AFFDKE NTGEV
Sbjct: 110 KVALNFVYLGIGSAVAAFLQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEV 169
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGKFIQ ++FIGGF++AF KGWLLTL MLSSIP LVIAG
Sbjct: 170 VGRMSGDTVLIQDAMGEKVGKFIQLVSTFIGGFIVAFVKGWLLTLVMLSSIPLLVIAGAG 229
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ ++ +AS+ Q A + AATVV Q IGSIRTVASFTGE+QA S Y K L +Y S VQE
Sbjct: 230 LAIIIARMASRGQTAYAKAATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQE 289
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G GLGLG + ++F +Y L +W+G K+ILEKGY+GGDV++VI VL GSMSLGQASPC
Sbjct: 290 GFTAGLGLGIVMLLVFCSYALAIWFGGKMILEKGYNGGDVINVIVAVLTGSMSLGQASPC 349
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
+SAFAAGQAAA+K FE INRKPEID +GK LDDI GD+EL+DV F+YPARPDEQI
Sbjct: 350 MSAFAAGQAAAYKMFETINRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFA 409
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+GT ALVG SGSGKSTVISLI+RFYDPQAGEVLIDG NLKEFQLKWIREKIG
Sbjct: 410 GFSLFIPSGTTTALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIG 469
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSI+DNIAYGK AT EEI+AA E ANA+ FI LPQG+DT VGEHG QL
Sbjct: 470 LVSQEPVLFASSIKDNIAYGKDGATTEEIRAATELANAAKFIDKLPQGIDTMVGEHGTQL 529
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTVIV+HRLS
Sbjct: 530 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLST 589
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDS----D 640
+ NA++IAVI +GK+VEKG+HSELL++P GAY++LIRLQE KES++ + S +
Sbjct: 590 VINADMIAVIYRGKMVEKGSHSELLKDPEGAYSQLIRLQEVNKESKQETEDPKKSALSAE 649
Query: 641 NQPFASPKITTPKQSETES------------------------DFPASE-----KAKMPP 671
+ +S +I+ + S D P SE + + P
Sbjct: 650 SLRQSSQRISLKRSISRGSSGVGHSSRNSLSVSFGLPTGFNVPDNPTSELEVSPQKQQTP 709
Query: 672 DVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHW 731
DV +SRLAYLN PEVP L+ G+IA++ NG+I+PI+G++L++++ EP +EL + SK W
Sbjct: 710 DVPISRLAYLNKPEVPVLIAGSIAAILNGVILPIYGILLSSVIKIFFEPPDELRKDSKFW 769
Query: 732 ALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIG 791
ALMF+ LG AS + P Y F+VAGCKLI+RIRSMCFEKVV+MEVGWFDE +HS+G IG
Sbjct: 770 ALMFMTLGLASFVVYPSQTYLFSVAGCKLIQRIRSMCFEKVVHMEVGWFDEPEHSSGEIG 829
Query: 792 ARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQ 851
ARLS+DAA+VR+LVGD+LS LVQN A+AV GLVIAF A WQLAL++L + PL+G+ G +Q
Sbjct: 830 ARLSADAAIVRALVGDSLSQLVQNIASAVAGLVIAFAASWQLALVILVLLPLIGLNGFVQ 889
Query: 852 MKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQG 911
+K MKGFSA+A+ MYEEASQVA+DAV SIRTVASFCAEEKVM+LY++KCEGP++ GIRQG
Sbjct: 890 VKFMKGFSADAKKMYEEASQVANDAVGSIRTVASFCAEEKVMQLYRRKCEGPMRTGIRQG 949
Query: 912 LMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLA 971
++SG GFG+SFF F YA TFYVGA+LV H + F +VFRVFFAL+M AIGISQ+SS A
Sbjct: 950 MISGTGFGVSFFLLFSVYATTFYVGAQLVRHGKTNFADVFRVFFALTMAAIGISQSSSFA 1009
Query: 972 SDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRD 1031
D+SKAK +AAS+F +ID+ SKID S+ +G TL+NV GE++ +SFKYP+RP IE+FRD
Sbjct: 1010 PDSSKAKGAAASIFAIIDRKSKIDPSDESGTTLDNVKGEIELRHISFKYPSRPDIEIFRD 1069
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L L I GKT+ALVGESGSGKSTVISLLQRFYDP SGHITLDG++IQ LQ+KWLRQQMG+
Sbjct: 1070 LSLAIHSGKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIDIQSLQLKWLRQQMGL 1129
Query: 1092 VSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQL 1135
VSQEPVLF++TIRANIA E+ANA+ FISGLQ+GYDT+VGERG QL
Sbjct: 1130 VSQEPVLFNETIRANIAYGKEGNATEAEILAASELANAHKFISGLQQGYDTVVGERGTQL 1189
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195
SGGQKQRVAIARA+VK PKILLLDEATSALD ESERVVQDALD+VMV RTT+VVAHRLST
Sbjct: 1190 SGGQKQRVAIARAMVKSPKILLLDEATSALDAESERVVQDALDRVMVSRTTVVVAHRLST 1249
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
IKNA +IAVV G+IVEKG HE+LI K+G Y SL+ H +
Sbjct: 1250 IKNADVIAVVKNGVIVEKGKHETLIHIKDGFYASLVALHMS 1290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064756|ref|XP_002301547.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222843273|gb|EEE80820.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1617 bits (4187), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 814/1224 (66%), Positives = 980/1224 (80%), Gaps = 53/1224 (4%)
Query: 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121
M++GT+ A GNG +P +++LFGDL++S G+N + V KVS KFVYL +G+ V S
Sbjct: 1 MILGTVGAIGNGASMPIMSILFGDLINSFGKNQNNKDVVDLVSKVSLKFVYLGVGSAVGS 60
Query: 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGE 181
F QVACWM+TGERQAARIR YL+TILRQD+AFFDKE N+GEVVGR+SGDT+LIQDA+GE
Sbjct: 61 FLQVACWMVTGERQAARIRGTYLKTILRQDVAFFDKETNSGEVVGRMSGDTVLIQDAMGE 120
Query: 182 KVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADS 241
KVGKFIQ ++FIGGF+I+F KGWLLTL MLSSIP LVIAG + ++ +AS+ Q A S
Sbjct: 121 KVGKFIQLVSTFIGGFIISFIKGWLLTLVMLSSIPLLVIAGAGLSIMIARMASRGQTAYS 180
Query: 242 LAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFS 301
AA+VV QTIGSIRTVASFTGE+QA S Y K LV +Y S VQEGLA G+GLG + ++F
Sbjct: 181 KAASVVEQTIGSIRTVASFTGEKQAISNYKKFLVTAYNSGVQEGLAAGVGLGIVMLVVFC 240
Query: 302 AYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEA 361
+Y L VW+G ++ILEKGY+GGDV++VI VL GSMSLGQASPC+SAFA+GQAAA+K FEA
Sbjct: 241 SYALAVWFGGRMILEKGYTGGDVINVIVAVLTGSMSLGQASPCMSAFASGQAAAYKMFEA 300
Query: 362 INRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGT 421
INRKPEID GK LDDIRGDIEL+DV F+YPARPDEQI +GF L IP+G+ AALVG
Sbjct: 301 INRKPEIDASDTRGKILDDIRGDIELRDVYFNYPARPDEQIFSGFSLFIPSGSTAALVGQ 360
Query: 422 SGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481
SGSGKSTVISLI+RFYDPQAGEVLIDG+NLKEFQLKWIREKIGLVSQEPVL +SSI+DNI
Sbjct: 361 SGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLKWIREKIGLVSQEPVLFTSSIKDNI 420
Query: 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541
AYGK AT EEI+AAAE ANA+ FI LPQG+DT VGEHG QLSGGQKQR+AIARA++KD
Sbjct: 421 AYGKDMATTEEIRAAAELANAAKFIDKLPQGIDTMVGEHGTQLSGGQKQRIAIARAILKD 480
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
PRILLLDEATSALD+ES R+VQEALDR+M+NRTTVIV+HRLS +RNA++IAVI +GK+VE
Sbjct: 481 PRILLLDEATSALDAESERIVQEALDRIMVNRTTVIVAHRLSTVRNADMIAVIYRGKMVE 540
Query: 602 KGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSD----NQPFASPKITTPKQ-SE 656
KG+HSELL++P GAY++LIRLQE KESE+ A + SD + +S KI+ + S
Sbjct: 541 KGSHSELLKDPEGAYSQLIRLQEVNKESEQEADDQKKSDISTESLRHSSQKISLKRSISR 600
Query: 657 TESDF----------------------------PASEKAKMPPDVSLSRLAYLNSPEVPA 688
SDF AS + + PDV +SRL YLN PEVP
Sbjct: 601 GSSDFGNSSRRSFSVTFGLPTGFNAPDNYTEELEASPQKQQTPDVPISRLVYLNKPEVPV 660
Query: 689 LLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPL 748
L+ GAIA++ NG+I PIFG++++ ++ T EP EL + SK WALMF+ LG AS + P
Sbjct: 661 LIAGAIAAIINGVIFPIFGILISRVIKTFFEPPHELRKDSKFWALMFMTLGLASFVVYPS 720
Query: 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808
Y F+VAGCKLI+RIRSMCFEK+V+MEVGWFDE +HS+GAIGARLS+DAA VR LVGD+
Sbjct: 721 QTYLFSVAGCKLIQRIRSMCFEKMVHMEVGWFDEPEHSSGAIGARLSADAATVRGLVGDS 780
Query: 809 LSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEE 868
LS LVQN A+AV GLVIAF ACWQLA ++L + PL+G+ G IQMK +KGFS++A +E
Sbjct: 781 LSQLVQNIASAVAGLVIAFVACWQLAFVILVLLPLIGLNGFIQMKFLKGFSSDA----KE 836
Query: 869 ASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMA 928
ASQVA+DAV SIRTVASFCAEEKVM+LY+KKCEGP++ GIRQGL+SG GFG+SFF F
Sbjct: 837 ASQVANDAVGSIRTVASFCAEEKVMQLYRKKCEGPMRTGIRQGLISGAGFGVSFFLLFSV 896
Query: 929 YAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLI 988
YA +FYVGA+LV H + TF +VF+VFFAL+M AIGISQ+SS A D+SKAK++AAS+F +I
Sbjct: 897 YATSFYVGAQLVQHGKTTFADVFQVFFALTMAAIGISQSSSFAPDSSKAKAAAASIFSII 956
Query: 989 DQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGES 1048
D+ S+IDSS+ +G TL+NV GE++ + FKYP RP IE+FRDL L I GKT+ALVGES
Sbjct: 957 DRKSQIDSSDESGTTLDNVKGEIELRHIGFKYPARPDIEIFRDLSLAIHSGKTVALVGES 1016
Query: 1049 GSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA 1108
GSGKSTVISLLQRFYDP SGHITLDG++I+ LQ+KWLRQQMG+VSQEPVLF++TIRANIA
Sbjct: 1017 GSGKSTVISLLQRFYDPHSGHITLDGIDIKSLQLKWLRQQMGLVSQEPVLFNETIRANIA 1076
Query: 1109 ----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152
E+ANA+ FIS LQ+GYDT+VGERG+QLSGGQKQRVAIARAIVK
Sbjct: 1077 YGKEGDATEAEILAASELANAHKFISSLQQGYDTVVGERGIQLSGGQKQRVAIARAIVKS 1136
Query: 1153 PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVE 1212
PKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA +IAVV G+IVE
Sbjct: 1137 PKILLLDEATSALDAESERVVQDALDRVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVE 1196
Query: 1213 KGSHESLISTKNGIYTSLIEPHTT 1236
KG HE+LI K+G Y SL+ H +
Sbjct: 1197 KGKHETLIHIKDGFYASLVALHMS 1220
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|14715462|dbj|BAB62040.1| CjMDR1 [Coptis japonica] | Back alignment and taxonomy information |
|---|
Score = 1610 bits (4170), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 816/1234 (66%), Positives = 989/1234 (80%), Gaps = 42/1234 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+P++KLLSFAD D +LM++GTIAA NG +P + LL GDL+++ GQNA T + V
Sbjct: 54 VPYYKLLSFADSKDVLLMVIGTIAAVANGASMPVMTLLLGDLINAFGQNANNTDTLRVVS 113
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV+ KFVYL++GAGVASFFQVACWM+TGERQAARIRS YL+TILRQD+AFFDKE NTGEV
Sbjct: 114 KVALKFVYLSIGAGVASFFQVACWMVTGERQAARIRSLYLKTILRQDVAFFDKETNTGEV 173
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDAIGEKVGKFIQ ++FIGGFLIAF KGWLLTL ML+SIPPLV G +
Sbjct: 174 VGRMSGDTVLIQDAIGEKVGKFIQLFSTFIGGFLIAFVKGWLLTLVMLTSIPPLVFCGAL 233
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M + +AS+ Q A S A VV QTIGSIRTVASFTGE+ A + Y K L K+Y + + E
Sbjct: 234 MTITISKMASRGQVAYSQAGIVVEQTIGSIRTVASFTGEKHAVTQYEKYLNKAYLAGIHE 293
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
GLA+G+GLG+ + +IF +Y L VW+G K+I+EKGY+GG+V+++I VL GSMSLGQASPC
Sbjct: 294 GLASGVGLGSVLLVIFCSYSLAVWFGGKMIIEKGYNGGNVINIIVAVLTGSMSLGQASPC 353
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
L AFAAGQAAA+K E I RKPEID +G K DDIRGDIEL+DV+F+YPARPDEQI N
Sbjct: 354 LGAFAAGQAAAYKMLETIKRKPEIDSYDTSGHKSDDIRGDIELRDVSFTYPARPDEQIFN 413
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+GT +ALVG SGSGKSTVISLI+RFYDPQAGEVLIDGVNLK+FQL+WIR KIG
Sbjct: 414 GFSLFIPSGTTSALVGQSGSGKSTVISLIERFYDPQAGEVLIDGVNLKDFQLRWIRGKIG 473
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSIRDNIAYGK AT EEI+AA E ANAS FI LPQGLDT VGEHG QL
Sbjct: 474 LVSQEPVLFASSIRDNIAYGKDGATVEEIKAATERANASKFIDKLPQGLDTLVGEHGTQL 533
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES +VQEALDR+M+NRTTVIV+HRLS
Sbjct: 534 SGGQKQRIAIARAILKDPRILLLDEATSALDAESEHIVQEALDRIMVNRTTVIVAHRLST 593
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCK------ESEKSAVNNS- 637
+RNA+ IAVI +GKIVEKG+H +LL NP GAY +LIRLQE + E+ +S +N+S
Sbjct: 594 VRNADTIAVIHRGKIVEKGSHLDLLLNPDGAYCQLIRLQEIGRSEVDKAENVESGLNSSQ 653
Query: 638 ----------------DSDNQPFA-SPKITTPKQSETESDFPASEKAKM--PPDVSLSRL 678
+S F+ S + T ET + ++ A + +V L RL
Sbjct: 654 QHSIGRSISRGSSGVGNSSRHSFSVSFGLPTGHIYETTAGLESTSPAPIGQTQEVPLRRL 713
Query: 679 AYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVAL 738
A LN PE+P LLLG I++M NG+I PIFGV+L++++ T EP+++L + ++ WA MF+ L
Sbjct: 714 ATLNKPEIPVLLLGVISAMVNGVIFPIFGVLLSSVIKTFYEPEDKLRKDTRFWAFMFIIL 773
Query: 739 GAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDA 798
G AS + +P + Y FAVAGC+LI+RIRSMCF V +ME+ WFDE +H++GAIGA+LS+DA
Sbjct: 774 GVASFVAAPATAYFFAVAGCRLIQRIRSMCFRTVAHMEIDWFDEPEHASGAIGAKLSADA 833
Query: 799 ALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGF 858
+ VR LVGD L+LLVQN ATAV GLVIAF A W LAL++L + PL+G+ G++QMK MKGF
Sbjct: 834 STVRGLVGDALALLVQNAATAVCGLVIAFVANWTLALIILVLIPLIGVNGYVQMKFMKGF 893
Query: 859 SANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGF 918
SA+A+ MYEEASQVA+DAV SIRTVASFCAEEKVM+LYKKKCEGP+K GIRQGL+SGIGF
Sbjct: 894 SADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEGPMKTGIRQGLISGIGF 953
Query: 919 GLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAK 978
G+SFF F YA +FY GA+LVD + TF++VFRVFFAL+M A+GISQ+SSLA D+SKAK
Sbjct: 954 GISFFLLFNVYATSFYAGARLVDAGKTTFSDVFRVFFALTMAALGISQSSSLAPDSSKAK 1013
Query: 979 SSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPP 1038
SS AS+FG++D+ SKIDSS+ +G T+ENV GE++ +SFKYPTRP I++FRDL L I
Sbjct: 1014 SSTASIFGILDRKSKIDSSDESGMTVENVKGEIELRHISFKYPTRPDIQIFRDLSLAIHS 1073
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098
GKT+ALVGESGSGKSTVISLLQRFYDP SGHITLDG+EIQK Q++WLR QMG+VSQEPVL
Sbjct: 1074 GKTVALVGESGSGKSTVISLLQRFYDPDSGHITLDGIEIQKFQLRWLRLQMGLVSQEPVL 1133
Query: 1099 FSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
F++TIRANI AE+ANA+ FISGLQ+GYDT+VGERG+QLSGGQKQR
Sbjct: 1134 FNETIRANIAYGKEGDATETEILAAAELANAHKFISGLQQGYDTVVGERGIQLSGGQKQR 1193
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
VAIARA+VK PKILLLDEATSALD ESERVVQDALD+VMV+RTT+ VAHRLSTIKNA +I
Sbjct: 1194 VAIARAMVKAPKILLLDEATSALDAESERVVQDALDKVMVNRTTVWVAHRLSTIKNADVI 1253
Query: 1203 AVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
AVV G+I EKG H LI+ K+G+Y SL+ HT+
Sbjct: 1254 AVVKNGVIAEKGKHNDLINVKDGVYASLVALHTS 1287
|
Source: Coptis japonica Species: Coptis japonica Genus: Coptis Family: Ranunculaceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224130846|ref|XP_002320939.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] gi|222861712|gb|EEE99254.1| multidrug/pheromone exporter, MDR family, ABC transporter family [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1606 bits (4159), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 812/1241 (65%), Positives = 973/1241 (78%), Gaps = 49/1241 (3%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF KL SFAD D +LM++GTI A GNG P +++LFGDL++S GQN + V
Sbjct: 50 VPFLKLFSFADSTDILLMILGTIGAVGNGASFPIMSILFGDLVNSFGQNQNNKDVVDLVT 109
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KVS FVYL +G+ VA+F QVACWM+TGERQAARIR YL+TIL+QD+AFFDKE NTGEV
Sbjct: 110 KVSLNFVYLGIGSAVAAFLQVACWMVTGERQAARIRGTYLKTILKQDVAFFDKETNTGEV 169
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGKFIQ ++FIGGF++AF KGWLL L MLSSIP LVI+G
Sbjct: 170 VGRMSGDTVLIQDAMGEKVGKFIQLVSTFIGGFIVAFVKGWLLALVMLSSIPLLVISGAG 229
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ ++ +AS+ Q A + AATVV Q IGSIRTVASFTGE+QA S Y K L +Y S VQE
Sbjct: 230 LAIIIARMASRGQTAYAKAATVVEQAIGSIRTVASFTGEKQAISNYKKFLATAYNSGVQE 289
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G GLGLG + ++F Y L +W+G K+ILEKGY+GGDV++VI VL GSMSLGQASPC
Sbjct: 290 GFTAGLGLGIVMLLVFCTYALAIWFGGKMILEKGYTGGDVVNVIIAVLTGSMSLGQASPC 349
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
+SAFAAGQAAA+K FE INRKPEID +GK LDDI GD+EL+DV F+YPARPDEQI +
Sbjct: 350 MSAFAAGQAAAYKMFETINRKPEIDSSDTSGKILDDISGDVELRDVYFTYPARPDEQIFS 409
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+GT ALVG SGSGKSTVISLI+RFYDPQAGEVLIDG NLKEFQLKWIREKIG
Sbjct: 410 GFSLFIPSGTTTALVGQSGSGKSTVISLIERFYDPQAGEVLIDGTNLKEFQLKWIREKIG 469
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSIRDNIAYGK AT EEI+A AE ANA+ FI LPQGLDT VGEHG Q+
Sbjct: 470 LVSQEPVLFTSSIRDNIAYGKDGATTEEIRAVAELANAAKFIDKLPQGLDTMVGEHGTQM 529
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTT+IV+HRLS
Sbjct: 530 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERIVQEALDRIMVNRTTLIVAHRLST 589
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNN-SDSDNQP 643
+RN ++I+VI GKIVEKG+HSELL++P GAY++LIRLQE KESE ++ SD +
Sbjct: 590 VRNVDLISVIHHGKIVEKGSHSELLKDPEGAYSQLIRLQEVNKESEHETEDHKSDITMES 649
Query: 644 F--ASPKI------------------------------TTPKQSETESDFPASEKAKMPP 671
F +SP+I + P + AS P
Sbjct: 650 FRQSSPRISLERSLSRGSSGAGNISPFSVSLGLHTAGFSVPDTDNAPGEVEASSHKPKTP 709
Query: 672 DVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHW 731
D + RLAYLN PE+P L+ GAIA++ NG+I PIFGV+L+ ++ T EP EL + SK W
Sbjct: 710 DGLIRRLAYLNKPEIPVLIAGAIAAILNGVIFPIFGVLLSNVIKTFFEPPHELRKDSKFW 769
Query: 732 ALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIG 791
ALMF+ LG AS L P Y F+VAG KLI+RIRS+CFEKVV+MEVGWFDE +HS+G IG
Sbjct: 770 ALMFMTLGLASFLVFPTQTYLFSVAGGKLIQRIRSICFEKVVHMEVGWFDEPEHSSGVIG 829
Query: 792 ARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQ 851
ARLS+DAA VR+LVGD+L+ +VQN A+A GLVIAF ACWQLAL++L + PL+G+ G IQ
Sbjct: 830 ARLSADAATVRALVGDSLAQMVQNIASATAGLVIAFTACWQLALIILVLIPLVGLNGIIQ 889
Query: 852 MKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQG 911
+K MKGFSA+A+ MYEEASQVA+DAV SIRTVASFCAEEKVM+LYKKKCEGP++ GI+QG
Sbjct: 890 IKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEEKVMQLYKKKCEGPMETGIKQG 949
Query: 912 LMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLA 971
L+ G GFG+SFF F YA +FY GA+LV H + TFTEVFRVFFAL+M AIGISQTSS
Sbjct: 950 LICGTGFGVSFFLLFSVYATSFYAGAQLVQHGKTTFTEVFRVFFALTMAAIGISQTSSFG 1009
Query: 972 SDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRD 1031
D+S AK++AAS+F +ID+ SK+D+S+ +G L++V GE++ +SFKYPTRP I++FRD
Sbjct: 1010 PDSSSAKTAAASIFSIIDRKSKMDASDESGTKLDSVRGEIELHHISFKYPTRPDIQIFRD 1069
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L L I GKT+ALVGESGSGKSTVISLLQRFYDP SGHITLDGV+IQ LQ+KWLRQQMG+
Sbjct: 1070 LSLVIHSGKTVALVGESGSGKSTVISLLQRFYDPHSGHITLDGVDIQSLQLKWLRQQMGL 1129
Query: 1092 VSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQL 1135
VSQEPVLF+DTIRANIA E+ANA+ FIS LQ+GYDT+VGERGVQL
Sbjct: 1130 VSQEPVLFNDTIRANIAYGKQGKATETEILAASELANAHNFISSLQQGYDTIVGERGVQL 1189
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195
SGGQKQRVAIARAIVK P++LLLDEATSALD ESER VQDALD+V+V+RTT+VVAHRLST
Sbjct: 1190 SGGQKQRVAIARAIVKSPRVLLLDEATSALDAESERTVQDALDRVVVNRTTVVVAHRLST 1249
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
IKNA +IAVV G+IVEKG H++LI K+G Y SL+ H T
Sbjct: 1250 IKNADVIAVVKNGVIVEKGKHDTLIHIKDGFYASLVALHMT 1290
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|384080871|dbj|BAM11098.1| ABC protein [Coptis japonica] | Back alignment and taxonomy information |
|---|
Score = 1603 bits (4151), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 825/1282 (64%), Positives = 1009/1282 (78%), Gaps = 50/1282 (3%)
Query: 4 DDNN---LDTSTGQAP----DQSTGNFTDKRCDHERGMNINIITVNGRIPFHKLLSFADL 56
D NN ST +P ++++G+ + D ++G + ++ +P++KL SFAD
Sbjct: 10 DQNNHLQATASTSHSPAKLTNKTSGSTKSDQQDSDKGEGVEKMSAE-TVPYYKLFSFADS 68
Query: 57 LDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALG 116
D VLM++GTIA+ NG +P + L GDL+++ GQNA + V +V+ +FVYLA+G
Sbjct: 69 KDLVLMVIGTIASVANGASMPIMTFLVGDLINAFGQNANNKNTLPVVSRVALRFVYLAVG 128
Query: 117 AGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQ 176
AGVAS FQVACWM+TGERQA+RIRS YL+TILRQD+AFFDKE NTGEVVGR+SGD + IQ
Sbjct: 129 AGVASVFQVACWMVTGERQASRIRSLYLKTILRQDVAFFDKETNTGEVVGRMSGDIVRIQ 188
Query: 177 DAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQK 236
DA+GEKVGKFIQ ++FIGGF++AF +GWLLTL MLSSIP LVI+G + +V +AS+
Sbjct: 189 DAMGEKVGKFIQLFSTFIGGFIVAFVRGWLLTLIMLSSIPVLVISGAFVTIVVSKMASRG 248
Query: 237 QAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASV 296
QAA S AA V QTIGSIRTVASF+GE+ A + Y K L K+YKS V EGLA+GLGLGAS+
Sbjct: 249 QAAYSQAAITVEQTIGSIRTVASFSGEKHAITQYEKSLQKAYKSGVHEGLASGLGLGASM 308
Query: 297 FIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAF 356
I F +Y L +W+G ++I+EK Y+GGD++++I +L+GS SLGQASPCLSAFAAGQAAAF
Sbjct: 309 LIFFCSYALAIWFGGRMIIEKDYTGGDIINIIDAILVGSFSLGQASPCLSAFAAGQAAAF 368
Query: 357 KFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIA 416
K FE I RKPEID G+ LDDI GDIELKD+ FSYPARPDEQI +GF L +P+GT +
Sbjct: 369 KMFETIKRKPEIDSYDTKGRVLDDIHGDIELKDICFSYPARPDEQIFSGFSLSLPSGTTS 428
Query: 417 ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSS 476
ALVG SGSGKSTVISLI+RFYDPQAGEVLIDG+NLKEFQL+WIR+KIGLVSQEPVL +SS
Sbjct: 429 ALVGESGSGKSTVISLIERFYDPQAGEVLIDGINLKEFQLRWIRQKIGLVSQEPVLFASS 488
Query: 477 IRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536
I+DNIAYGK AT E+I+AAAE ANA+ FI LPQGLDT VGEHG LSGGQKQRVAIAR
Sbjct: 489 IKDNIAYGKDGATLEDIKAAAELANAAKFIDKLPQGLDTLVGEHGTHLSGGQKQRVAIAR 548
Query: 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596
A++KDPRILLLDEATSALD+ES +VQEALDRVM+NRTTV+V+HRLS IR+A++IAV+ +
Sbjct: 549 AILKDPRILLLDEATSALDAESEHIVQEALDRVMVNRTTVVVAHRLSTIRSADMIAVVHR 608
Query: 597 GKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSA----VNNSDSDNQPF-------- 644
GKIVEKG+HSELL++P GAY++LIRLQE + SE A S S Q F
Sbjct: 609 GKIVEKGSHSELLKDPDGAYSQLIRLQEVNRSSENKAESTEFGRSSSHQQSFRRSMSRGS 668
Query: 645 -----ASPK-------ITTPKQSETESDFPAS--EKAKMPPDVSLSRLAYLNSPEVPALL 690
+S K + TP E S P S E K +V L RLA LN PE+P LL
Sbjct: 669 SGVGNSSRKSFSMSFGLPTPHIPEVVSAKPESTPEPKKQTEEVPLLRLASLNKPEIPILL 728
Query: 691 LGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSM 750
LGAI++ NG+I PIFGV+LA+++ T +P++EL + S+ WALMF+ LG AS + SP
Sbjct: 729 LGAISAAINGLIFPIFGVLLASVIKTFYKPEDELRKDSRFWALMFIVLGIASFVASPAGT 788
Query: 751 YCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLS 810
Y F+VAGC+LI+RIRSMCFEKVV+ME+ WFDE +HS+GAIGA+LSSDAA VRSLVGD LS
Sbjct: 789 YFFSVAGCRLIQRIRSMCFEKVVHMEINWFDEPEHSSGAIGAKLSSDAASVRSLVGDALS 848
Query: 811 LLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEAS 870
LLVQN A+A+ GL IAF+A W LAL++L + PL+G+ G++Q K M GFSA+A+ MYEEAS
Sbjct: 849 LLVQNAASAIAGLAIAFEANWILALIILVLLPLIGLNGYLQTKFMTGFSADAKMMYEEAS 908
Query: 871 QVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYA 930
QVASDAV SIRTVASFCAEEKVM+LYKKKCEGP+K GIRQGL+SGIGFG+SFF + YA
Sbjct: 909 QVASDAVGSIRTVASFCAEEKVMQLYKKKCEGPMKTGIRQGLISGIGFGVSFFLLYNVYA 968
Query: 931 VTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQ 990
+FYVGA+LV+ + TF EVFRVFFAL+M A+GISQ+SS A D+SKA++S AS++G++D+
Sbjct: 969 TSFYVGARLVEDGKTTFAEVFRVFFALTMAALGISQSSSFAPDSSKARASTASIYGILDR 1028
Query: 991 VSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGS 1050
SKIDSS+ +G TLEN+ G+++ VSFKY TRP I++ RDL L I GKT+ALVGESGS
Sbjct: 1029 KSKIDSSDDSGITLENLNGDIELRHVSFKYSTRPDIQILRDLSLAIRSGKTVALVGESGS 1088
Query: 1051 GKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--- 1107
GKSTVISLLQRFYDP SG+ITLDGVEIQKLQ++WLRQQMG+VSQEPVLF++TIRANI
Sbjct: 1089 GKSTVISLLQRFYDPDSGYITLDGVEIQKLQLRWLRQQMGLVSQEPVLFNETIRANIAYG 1148
Query: 1108 -------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154
AE+ANA+ FIS LQ+GYDT+VGERGVQLSGGQKQRVAIARA+VK PK
Sbjct: 1149 KEGDATETEILAAAELANAHKFISALQQGYDTMVGERGVQLSGGQKQRVAIARAMVKAPK 1208
Query: 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214
ILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA LIAVV G+IVEKG
Sbjct: 1209 ILLLDEATSALDAESERVVQDALDKVMVNRTTIVVAHRLSTIKNADLIAVVKNGVIVEKG 1268
Query: 1215 SHESLISTKNGIYTSLIEPHTT 1236
H+ LI+ +G+Y SL+ H T
Sbjct: 1269 KHDHLINISDGVYASLVALHMT 1290
|
Source: Coptis japonica Species: Coptis japonica Genus: Coptis Family: Ranunculaceae Order: Ranunculales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356499544|ref|XP_003518599.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1600 bits (4144), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 805/1241 (64%), Positives = 982/1241 (79%), Gaps = 53/1241 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PFHKL +FAD D +LM VGTI A GNGL +P + LLFG ++DS G N T + V
Sbjct: 42 VPFHKLFAFADSTDILLMAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQQNTHVVEEVS 101
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KVS KFVYLA+G+G+A+F QV WM+TGERQAARIR YL+TILRQD+AFFDKE NTGEV
Sbjct: 102 KVSLKFVYLAVGSGMAAFLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEV 161
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
+GR+SGDT+LIQDA+GEKVGKF+Q A+FIGGF+IAF +GWLLT+ MLS++P L ++G
Sbjct: 162 IGRMSGDTVLIQDAMGEKVGKFLQLIATFIGGFVIAFVRGWLLTVVMLSTLPLLALSGAT 221
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M ++G +AS+ Q A + AA VV QTIGSIRTVASFTGE+QA S Y+K LV +YKS V E
Sbjct: 222 MAVIIGRMASRGQTAYAKAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHE 281
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G G GLG + +IF Y L VW+GAK+I+EKGY+GG V++VI VL SMSLGQASP
Sbjct: 282 GSTAGAGLGTVMLVIFCGYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGQASPS 341
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
+SAFAAGQAAA+K F+ I RKPEID NGK L+DI+G+IEL+DV+FSYPARP+E I N
Sbjct: 342 MSAFAAGQAAAYKMFQTIERKPEIDAYDPNGKILEDIQGEIELRDVDFSYPARPEELIFN 401
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+GT AALVG SGSGKSTVISL++RFYDPQAGEVLIDG+NLKEFQL+WIR KIG
Sbjct: 402 GFSLHIPSGTTAALVGQSGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIG 461
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL +SSI+DNIAYGK AT EEI++A+E ANA+ FI LPQGLDT VGEHG QL
Sbjct: 462 LVSQEPVLFASSIKDNIAYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVGEHGTQL 521
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++K+PRILLLDEATSALD+ES R+VQEALDR+M+NRTT+IV+HRLS
Sbjct: 522 SGGQKQRIAIARAILKNPRILLLDEATSALDAESERIVQEALDRIMVNRTTIIVAHRLST 581
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSD---- 640
+RNA++IAVI +GK+VEKGTH ELL++P GAY++LIRLQE KE+E +A +++S+
Sbjct: 582 VRNADVIAVIHRGKMVEKGTHIELLKDPEGAYSQLIRLQEVNKETEGNADQHNNSELSVE 641
Query: 641 -----------------------------NQPFASPKITTPKQSETESDFPASEKAKMPP 671
+ F P E ES P E P
Sbjct: 642 SFRQSSQKRSLQRSISRGSSLGNSSRHSFSVSFGLPTGVNVADPEHESSQPKEE----AP 697
Query: 672 DVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHW 731
+V LSRLA LN PE+P L++G++A++ NG+I PIFGV++++++ T EP +E+ + SK W
Sbjct: 698 EVPLSRLASLNKPEIPVLVIGSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSKFW 757
Query: 732 ALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIG 791
ALMF+ LG AS L P Y FAVAGCKLI+RIR MCFEKVV MEV WFDE ++S+GAIG
Sbjct: 758 ALMFMILGLASFLIIPARGYFFAVAGCKLIQRIRQMCFEKVVNMEVSWFDEPENSSGAIG 817
Query: 792 ARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQ 851
ARLS+DAA VR+LVGD L LLVQN AT + GL+IAF A WQLAL++L + PL+G+ G++Q
Sbjct: 818 ARLSADAASVRALVGDALGLLVQNFATVLAGLIIAFVASWQLALIILVLIPLIGVNGYVQ 877
Query: 852 MKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQG 911
MK MKGFSA+A+ MYEEASQVA+DAV SIRTVASFCAE+KVM+LYK KCEGP+K GIRQG
Sbjct: 878 MKFMKGFSADAKMMYEEASQVANDAVGSIRTVASFCAEDKVMELYKNKCEGPMKTGIRQG 937
Query: 912 LMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLA 971
L+SG GFG+SFF F YA +FY GA+LVD +ATF++VFRVFFAL+M AIG+SQ+SS A
Sbjct: 938 LISGSGFGVSFFLLFCVYATSFYAGARLVDAGKATFSDVFRVFFALTMAAIGVSQSSSFA 997
Query: 972 SDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRD 1031
D+SKAKS+ AS+FG+ID+ SKID + +G TL++V GE++ VSFKYP+RP I++FRD
Sbjct: 998 PDSSKAKSATASIFGIIDKKSKIDPGDESGSTLDSVKGEIELRHVSFKYPSRPDIQIFRD 1057
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L LTI GKT+ALVGESGSGKSTVI+LLQRFY+P SG ITLDG+EI++LQ+KWLRQQMG+
Sbjct: 1058 LSLTIHSGKTVALVGESGSGKSTVIALLQRFYNPDSGQITLDGIEIRELQLKWLRQQMGL 1117
Query: 1092 VSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQL 1135
VSQEPVLF++TIRANIA EMANA+ FISGLQ+GYDT+VGERG QL
Sbjct: 1118 VSQEPVLFNETIRANIAYGKGGDATEAEIIAAAEMANAHKFISGLQQGYDTIVGERGTQL 1177
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195
SGGQKQRVAIARAI+K PKILLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLST
Sbjct: 1178 SGGQKQRVAIARAIIKSPKILLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLST 1237
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
IKNA +IAVV G+IVEKG HE LI+ G Y SL++ HT+
Sbjct: 1238 IKNADVIAVVKNGVIVEKGKHEKLINVSGGFYASLVQLHTS 1278
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359477265|ref|XP_002275169.2| PREDICTED: ABC transporter B family member 11-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1598 bits (4138), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 811/1252 (64%), Positives = 978/1252 (78%), Gaps = 27/1252 (2%)
Query: 11 STGQAPDQSTGNFTDK---RCDHERGMNINIITVNGRIPFHKLLSFADLLDSVLMLVGTI 67
ST Q P T + R D E+ I+ + +PF+KL SFAD D +LMLVGT+
Sbjct: 19 STRQTPAVETVKIPENAGNRQDSEKRKATQGISTS-TVPFYKLFSFADSWDYLLMLVGTV 77
Query: 68 AATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVAC 127
A GNG+C+P VALLFG+LMD+ G+ +H V K+ KFVYL+ GA VASFFQV C
Sbjct: 78 TAVGNGMCLPAVALLFGELMDAFGKTVNTNNMLHEVSKLCLKFVYLSSGAAVASFFQVTC 137
Query: 128 WMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFI 187
WM+TGERQA RIRS YL+TILRQDIAFFDKE TGEVVGR+SGDT+LIQDA+GEKVG I
Sbjct: 138 WMVTGERQATRIRSLYLKTILRQDIAFFDKETKTGEVVGRMSGDTVLIQDAMGEKVGMVI 197
Query: 188 QFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVV 247
Q A+FIGGF +AFFKGW+L L +LS IPPLV + VM L+ LASQ+Q + S+AA+VV
Sbjct: 198 QLAATFIGGFFVAFFKGWILVLVLLSCIPPLVASSAVMTILLAKLASQEQTSYSVAASVV 257
Query: 248 AQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGV 307
QTIGSIRTV SFTGE+QA + Y K L K+Y S+V+EGLATGLGLG+ +FI+F + L V
Sbjct: 258 EQTIGSIRTVISFTGEKQAIAKYKKSLTKAYDSAVREGLATGLGLGSVMFIVFCIFALAV 317
Query: 308 WYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPE 367
W+GAKLI+ KGYSGG+V+ VI VL SMSLGQ SPC+ AFAAGQAAAFK FE INRKPE
Sbjct: 318 WFGAKLIINKGYSGGNVVGVIVAVLTASMSLGQTSPCIKAFAAGQAAAFKMFETINRKPE 377
Query: 368 IDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKS 427
ID G KLDDI GD+EL+DV FSYPARPDEQI +GF + IP+GT ALVG SGSGKS
Sbjct: 378 IDAYDTKGLKLDDISGDVELRDVYFSYPARPDEQIFSGFSISIPSGTTTALVGQSGSGKS 437
Query: 428 TVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH 487
TVISL++RFYDPQAGEVLIDG+NLK+FQL+WIR+KIGLV+QEPVL +SSI+DNIAYGK
Sbjct: 438 TVISLVERFYDPQAGEVLIDGINLKDFQLRWIRQKIGLVNQEPVLFASSIKDNIAYGKDD 497
Query: 488 ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLL 547
AT EEI+AAAE ANA+ FI LPQGLDT VGEHG+ LSGGQKQRVAIARA++KDPRILLL
Sbjct: 498 ATIEEIRAAAELANAAKFIHKLPQGLDTMVGEHGMHLSGGQKQRVAIARAILKDPRILLL 557
Query: 548 DEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSE 607
DEATSALD S R+VQEALDRVM+NRTT+IV+HRLS +RNA++IAVI QGKIVEKG+H+E
Sbjct: 558 DEATSALDLGSERIVQEALDRVMMNRTTIIVAHRLSTVRNADMIAVIHQGKIVEKGSHTE 617
Query: 608 LLENPYGAYNRLIRLQETCKESEK-----SAVNNSDSDNQPFASPKITTP--KQSETESD 660
LL +P+GAY++L++LQE ESE+ + + PF +P ET
Sbjct: 618 LLRDPHGAYHQLVQLQEISSESEQHDESWESFGARHHNRFPFPFSFGVSPGINMLETAPA 677
Query: 661 FPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEP 720
P SE K P + + RLA LN PE+P LLLG +A++ NG+I+P F V+ + +++ E
Sbjct: 678 KPNSEPLKHPTEGLVWRLACLNKPEIPVLLLGIVAAIANGLILPAFAVLFSTIIDNFYES 737
Query: 721 KEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWF 780
++L + SK WALMF LG ASLL +P Y FAVAGCKLIKRIRSMCFEKVV+MEVGWF
Sbjct: 738 ADKLRKESKFWALMFFILGVASLLITPTRTYLFAVAGCKLIKRIRSMCFEKVVHMEVGWF 797
Query: 781 DEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAI 840
D+A++S+GAIG RLS+DAA VRSLVGD L+L+VQN AT + GL AF+A W LAL++L
Sbjct: 798 DKAENSSGAIGGRLSADAASVRSLVGDALALVVQNIATVIAGLAAAFEANWLLALIILVF 857
Query: 841 FPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKC 900
PL+GI G IQ++ KGFS +A+ YEEASQVA++AV +IRTVASFCAEEKVM+LY+KKC
Sbjct: 858 LPLIGINGCIQLQFTKGFSGDAKKRYEEASQVANEAVGNIRTVASFCAEEKVMQLYQKKC 917
Query: 901 EGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMT 960
EGP K G+ +GL+SG+GFGLSFFF + YAVTFY GA+L + TF+++ RVFFALSM
Sbjct: 918 EGPAKTGMTRGLISGLGFGLSFFFVYFIYAVTFYAGARLFRDGKTTFSKILRVFFALSMV 977
Query: 961 AIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKY 1020
+G+SQ+ S A DASKAKS AAS+F ++DQ+S+IDSS +G+ L+NV G+++F VSF+Y
Sbjct: 978 GLGVSQSGSYAPDASKAKSCAASIFAILDQISEIDSSGRSGKRLKNVKGDIKFRHVSFRY 1037
Query: 1021 PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL 1080
PTRP I++FRDLCLTI GKT+ALVGESG GKSTVISLLQRFYDP SG ITLDG +IQKL
Sbjct: 1038 PTRPEIQIFRDLCLTIRSGKTVALVGESGCGKSTVISLLQRFYDPDSGRITLDGADIQKL 1097
Query: 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGY 1124
Q++WLRQQMG+VSQEP LF+DTIRANI E+ANA+ FIS LQ+GY
Sbjct: 1098 QLRWLRQQMGLVSQEPTLFNDTIRANIGYGKEGNATEAEIIAAAELANAHHFISSLQQGY 1157
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
DT VGERGVQLSGGQKQRVAIARA+VK PKILLLDEATSALD ESERVVQDALD++MV +
Sbjct: 1158 DTAVGERGVQLSGGQKQRVAIARAVVKGPKILLLDEATSALDAESERVVQDALDRIMVGK 1217
Query: 1185 TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
TTLVVAHRLSTIK A LIAVV G+I EKG+HESL++ KNG Y SL+ H T
Sbjct: 1218 TTLVVAHRLSTIKGADLIAVVKNGLIAEKGNHESLMNIKNGRYASLVALHAT 1269
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356533485|ref|XP_003535294.1| PREDICTED: ABC transporter B family member 4-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1595 bits (4131), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 807/1281 (62%), Positives = 1001/1281 (78%), Gaps = 58/1281 (4%)
Query: 2 EHDDNNLDTSTGQAPDQSTGNFTDKRCDHERGMNINIITVNGRIPFHKLLSFADLLDSVL 61
+HDD + TS +A + G +K E+ + PFHKL +FAD D +L
Sbjct: 10 KHDDAS--TSENRAETSTNGEKEEKSKQQEKPETV---------PFHKLFAFADSTDILL 58
Query: 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121
M VGTI A GNGL +P + LLFG ++DS G N T + V KVS KFVYLA+G+G+A+
Sbjct: 59 MAVGTIGAIGNGLGLPLMTLLFGQMIDSFGSNQRNTNVVEEVSKVSLKFVYLAVGSGLAA 118
Query: 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGE 181
F QV WM+TGERQAARIR YL+TILRQD+AFFDKE NTGEV+GR+SGDT+LIQDA+GE
Sbjct: 119 FLQVTSWMVTGERQAARIRGLYLKTILRQDVAFFDKETNTGEVIGRMSGDTVLIQDAMGE 178
Query: 182 KVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADS 241
KVGKF+Q A+FIGGF+IAF KGWLLT+ MLS++P L ++G M ++G +AS+ Q A +
Sbjct: 179 KVGKFLQLIATFIGGFVIAFIKGWLLTVVMLSTLPLLALSGATMAVIIGRMASRGQTAYA 238
Query: 242 LAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFS 301
AA VV QTIGSIRTVASFTGE+QA S Y+K LV +YKS V EG G GLG + +IF
Sbjct: 239 KAAHVVEQTIGSIRTVASFTGEKQAVSSYSKFLVDAYKSGVHEGFIAGAGLGTVMLVIFC 298
Query: 302 AYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEA 361
Y L VW+GAK+I+EKGY+GG V++VI VL SMSLG+ASP LSAFAAGQAAA+K F+
Sbjct: 299 GYALAVWFGAKMIMEKGYNGGTVINVIIAVLTASMSLGEASPSLSAFAAGQAAAYKMFQT 358
Query: 362 INRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGT 421
I RKPEID NGK L+DI+G+IEL+DV FSYPARP+E I NGF L IP+GT AALVG
Sbjct: 359 IERKPEIDAYDPNGKILEDIQGEIELRDVYFSYPARPEELIFNGFSLHIPSGTTAALVGQ 418
Query: 422 SGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481
SGSGKSTVISL++RFYDPQAGEVLIDG+NLKEFQL+WIR KIGLVSQEPVL +SSI+DNI
Sbjct: 419 SGSGKSTVISLVERFYDPQAGEVLIDGINLKEFQLRWIRGKIGLVSQEPVLFASSIKDNI 478
Query: 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541
AYGK AT EEI++A+E ANA+ FI LPQGLDT V EHG QLSGGQKQR+AIARA++K+
Sbjct: 479 AYGKEGATIEEIRSASELANAAKFIDKLPQGLDTMVCEHGTQLSGGQKQRIAIARAILKN 538
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
PRILLLDEATSALD+ES R+VQEALDR+M+NRTT++V+HRLS +RNA++IAVI +GK+VE
Sbjct: 539 PRILLLDEATSALDAESERVVQEALDRIMVNRTTIVVAHRLSTVRNADMIAVIHRGKMVE 598
Query: 602 KGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETES-- 659
KGTHSELL++P GAY++LIRLQE KE+E +A + D S + ++ K+S S
Sbjct: 599 KGTHSELLKDPEGAYSQLIRLQEVSKETEGNA-DQHDKTELSVESFRQSSQKRSLQRSIS 657
Query: 660 ----------------------------DFPASEKAKMPPDVSLSRLAYLNSPEVPALLL 691
+ S+ + P+V LSRLA LN PE+P +++
Sbjct: 658 RGSSLGNSSRHSFSVSFGLPTGVNVADPELENSQPKEEAPEVPLSRLASLNKPEIPVIVI 717
Query: 692 GAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMY 751
G++A++ NG+I PIFGV++++++ T EP +E+ + S+ WALMF+ LG AS L P Y
Sbjct: 718 GSVAAIANGVIFPIFGVLISSVIKTFYEPFDEMKKDSEFWALMFMILGLASFLIIPARGY 777
Query: 752 CFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSL 811
F+VAGCKLI+RIR MCFEKVV MEV WFDE ++S+GAIGARLS+DAA VR+LVGD L L
Sbjct: 778 FFSVAGCKLIQRIRLMCFEKVVNMEVSWFDEPENSSGAIGARLSADAASVRALVGDALGL 837
Query: 812 LVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQ 871
LVQN ATA+ GL+IAF A WQLAL++L + PL+G+ G++QMK MKGFSA+A+ MYEEASQ
Sbjct: 838 LVQNFATALAGLIIAFVASWQLALIILVLIPLIGVNGYVQMKFMKGFSADAKMMYEEASQ 897
Query: 872 VASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAV 931
VA+DAV SIRTVASFCAE+KVM+LYKKKCEGP+K GIRQGL+SG GFG+SFF F YA
Sbjct: 898 VANDAVGSIRTVASFCAEDKVMELYKKKCEGPMKTGIRQGLISGSGFGVSFFLLFCVYAT 957
Query: 932 TFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQV 991
+FY GA+L+D + TF++VF+VFFAL+M AIG+SQ+SS A D+SKAKS+ AS+FG+ID+
Sbjct: 958 SFYAGARLMDSGKTTFSDVFQVFFALTMAAIGVSQSSSFAPDSSKAKSATASIFGIIDKK 1017
Query: 992 SKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSG 1051
SKIDSS+ +G TL+++ GE++ VSFKYP+RP +++FRDL LTI GKT+ALVGESGSG
Sbjct: 1018 SKIDSSDASGSTLDSIKGEIELRHVSFKYPSRPDMQIFRDLRLTIHSGKTVALVGESGSG 1077
Query: 1052 KSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--- 1108
KSTVI+LLQRFYDP SG ITLDGVEI++LQ+KWLRQQMG+VSQEPVLF++++RANIA
Sbjct: 1078 KSTVIALLQRFYDPDSGQITLDGVEIRELQLKWLRQQMGLVSQEPVLFNESLRANIAYGK 1137
Query: 1109 -------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155
E+ANA+ FISGLQ+GYDT+VGERG QLSGGQKQRVAIARAI+K PKI
Sbjct: 1138 GGDATEAEIIAAAELANAHKFISGLQQGYDTIVGERGTQLSGGQKQRVAIARAIIKSPKI 1197
Query: 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
LLLDEATSALD ESERVVQDALD+VMV+RTT+VVAHRLSTIKNA +IAVV G+IVEKG
Sbjct: 1198 LLLDEATSALDAESERVVQDALDKVMVNRTTVVVAHRLSTIKNADVIAVVKNGVIVEKGK 1257
Query: 1216 HESLISTKNGIYTSLIEPHTT 1236
HE LI+ +G Y SL++ HT+
Sbjct: 1258 HEKLINLSDGFYASLVQLHTS 1278
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255556604|ref|XP_002519336.1| multidrug resistance protein 1, 2, putative [Ricinus communis] gi|223541651|gb|EEF43200.1| multidrug resistance protein 1, 2, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1595 bits (4130), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 803/1235 (65%), Positives = 1007/1235 (81%), Gaps = 31/1235 (2%)
Query: 24 TDKRCDHERGMNINIITVNGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLF 83
T+K D E+ ++ +P++KL SFAD LD +L+ +GT+AA GNG+C+P + +L
Sbjct: 38 TEKVNDKEKDIHT--------VPYYKLFSFADSLDILLITIGTVAAFGNGICMPLMTILL 89
Query: 84 GDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFY 143
G+L+DSIG++A+ + H V +VS KF+YLALG+G ASFFQVACWMITGERQAARIRS Y
Sbjct: 90 GELIDSIGKSASTSTVAHNVAQVSLKFIYLALGSGFASFFQVACWMITGERQAARIRSLY 149
Query: 144 LETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203
L+ +LRQDI+FFDKE NTGEVVGR+SGDT+LIQDA+GEKVG FIQ ASF+GGFL+AF K
Sbjct: 150 LKAVLRQDISFFDKEANTGEVVGRMSGDTILIQDAMGEKVGNFIQLLASFVGGFLVAFLK 209
Query: 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGE 263
GWLLTL MLS IPP+V++G +M KLVG LAS+ Q + ++AA ++ QTIGSIRTVASFTGE
Sbjct: 210 GWLLTLVMLSLIPPIVLSGAIMNKLVGKLASRGQTSYTVAANILEQTIGSIRTVASFTGE 269
Query: 264 QQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGD 323
+ A YNK L ++Y S VQEGLA G+G G +FI+ +YG VW+G +++LEKGY+GG+
Sbjct: 270 KHAVVRYNKSLSRAYDSGVQEGLAAGVGFGTLMFILLCSYGFAVWFGGRMVLEKGYTGGN 329
Query: 324 VMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRG 383
V++VIF +L GS+SLGQASPC++AFAAGQAAA K FEAINRKPEID G KL++I G
Sbjct: 330 VLNVIFSLLTGSLSLGQASPCINAFAAGQAAAVKIFEAINRKPEIDAYDTKGLKLEEIHG 389
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
DIEL++V FSYP+RP EQI GFCL +P+GT ALVG SGSGKSTVISLI+RFYDPQAGE
Sbjct: 390 DIELRNVYFSYPSRPHEQIFCGFCLSVPSGTTTALVGHSGSGKSTVISLIERFYDPQAGE 449
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
VLIDGVNLKEFQLKWIR+ IGLVSQEP+L +SSIR+NIAYGK AT EEI+AAA+ ANA+
Sbjct: 450 VLIDGVNLKEFQLKWIRKNIGLVSQEPLLFTSSIRENIAYGKEGATMEEIRAAADLANAA 509
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+ I LP+GLDT VGEHGIQLSGGQKQR+AIARA++K+PRIL+LDEATSALD+ES RMVQ
Sbjct: 510 NVINMLPKGLDTMVGEHGIQLSGGQKQRIAIARAVLKNPRILILDEATSALDAESERMVQ 569
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
ALDRVMINRTT++V+HRLS +RNAN+IAV+Q+GKIV+KGT S+LL++P GAY +LI+ Q
Sbjct: 570 VALDRVMINRTTLMVAHRLSTVRNANMIAVMQKGKIVQKGTLSDLLKDPNGAYAQLIQYQ 629
Query: 624 ETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFP------ASEKAKMPPDVSLSR 677
E E ++ + + S + + T+P+ S +E P +SE +KMP + L R
Sbjct: 630 EFV-EPVQNVLKSPGSSHHSIWASVGTSPRVSLSEQAAPEPLSTTSSETSKMPLENPLRR 688
Query: 678 LAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVA 737
LA L+SPE+P LL+GA+A++ NGII+PIFG++LA ++ T E +++L + S+ WAL+FV
Sbjct: 689 LALLSSPEIPVLLVGAVAAVVNGIIMPIFGLLLANIIKTYYEKEDQLRKDSRFWALIFVL 748
Query: 738 LGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSD 797
+G SL+T+P+S Y F+VAGC+LIKRIR M FEKVV ME+ WFDE +HS+GAIGA LS+D
Sbjct: 749 VGLVSLVTTPMSTYFFSVAGCRLIKRIRLMFFEKVVNMEIAWFDEPEHSSGAIGASLSAD 808
Query: 798 AALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKG 857
AA +R LVGDT +LL+QNTAT + GLVIAF A WQ+AL++L + PL+G++G++Q+KSMKG
Sbjct: 809 AAAMRGLVGDTFALLIQNTATGIAGLVIAFHANWQIALVILVLLPLMGLSGYVQLKSMKG 868
Query: 858 FSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIG 917
F+ANA+ MYE+ASQVASDAVSSIRTVASFCAEEKVM+LY+K C+GP+KAG + L+SGIG
Sbjct: 869 FNANAKKMYEKASQVASDAVSSIRTVASFCAEEKVMQLYQKNCDGPLKAGKMRALISGIG 928
Query: 918 FGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKA 977
FGLSFFF F YAV+FYVGA LVDH +ATFTEVFRVFFALSM A+GISQ++SLA DA+KA
Sbjct: 929 FGLSFFFLFFFYAVSFYVGAHLVDHGKATFTEVFRVFFALSMAALGISQSNSLAPDANKA 988
Query: 978 KSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIP 1037
+SSAAS+F ++DQ SKID S+ +G +EN+ GE++F V F+YP RP I++F+D L I
Sbjct: 989 RSSAASIFTILDQKSKIDPSDPSGTIIENLKGEIEFRHVGFQYPLRPDIQIFQDFSLAIQ 1048
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV 1097
GK +ALVGESGSGKSTVI+LLQRFY+P SG ITLDG+EIQ+L++KWLRQQMG+VSQEPV
Sbjct: 1049 SGKIVALVGESGSGKSTVIALLQRFYNPDSGKITLDGIEIQRLRLKWLRQQMGLVSQEPV 1108
Query: 1098 LFSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141
LF+D+IRANI AE+ANA+ FIS L++GYDT+VGERGVQLSGGQKQ
Sbjct: 1109 LFNDSIRANIAYGREANATEAEIMAAAELANAHCFISSLKQGYDTIVGERGVQLSGGQKQ 1168
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
RVAIARAIVK P+ILLLDEATSALD ESER VQDAL++VMV RTTLV+AHRLSTIK A
Sbjct: 1169 RVAIARAIVKAPRILLLDEATSALDAESERGVQDALERVMVGRTTLVIAHRLSTIKCADK 1228
Query: 1202 IAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
IAV+ G IVEKG H++LI+ KNGIY SL+ P +T
Sbjct: 1229 IAVLKNGEIVEKGKHKTLINIKNGIYASLMAPQST 1263
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 1236 | ||||||
| TAIR|locus:2141365 | 1230 | ABCB5 "ATP-binding cassette B5 | 0.955 | 0.960 | 0.529 | 0.0 | |
| TAIR|locus:2141350 | 1229 | ABCB3 "ATP-binding cassette B3 | 0.860 | 0.865 | 0.568 | 0.0 | |
| TAIR|locus:2196145 | 1278 | ABCB11 "ATP-binding cassette B | 0.508 | 0.491 | 0.620 | 0.0 | |
| TAIR|locus:2041434 | 1286 | ABCB4 "ATP-binding cassette B4 | 0.483 | 0.465 | 0.636 | 0.0 | |
| TAIR|locus:2196135 | 1273 | ABCB12 "ATP-binding cassette B | 0.471 | 0.457 | 0.646 | 0.0 | |
| TAIR|locus:2151496 | 1248 | ABCB7 "ATP-binding cassette B7 | 0.475 | 0.471 | 0.555 | 0.0 | |
| TAIR|locus:2117656 | 1236 | ABCB9 "ATP-binding cassette B9 | 0.855 | 0.855 | 0.501 | 6.1e-261 | |
| TAIR|locus:2090734 | 1252 | ABCB19 "ATP-binding cassette B | 0.468 | 0.462 | 0.459 | 1.7e-244 | |
| TAIR|locus:2019958 | 1227 | PGP10 "P-glycoprotein 10" [Ara | 0.947 | 0.954 | 0.419 | 3e-243 | |
| UNIPROTKB|Q0JCP1 | 1259 | Os04g0459000 "Os04g0459000 pro | 0.477 | 0.468 | 0.447 | 5.9e-242 |
| TAIR|locus:2141365 ABCB5 "ATP-binding cassette B5" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3071 (1086.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 638/1205 (52%), Positives = 833/1205 (69%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL F+D D +LM+VG+I A NG+C P + LLFG+L+D++G N + V
Sbjct: 13 VPFYKLFFFSDSTDVLLMIVGSIGAIANGVCSPLMTLLFGELIDAMGPNQNNEEIVERVS 72
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV VYL LGA A+F QVACWMITGERQAARIRS YL+TILRQDI FFD E+ TGEV
Sbjct: 73 KVCLSLVYLGLGALGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVEMTTGEV 132
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LI DA+GEKVGKFIQ ++F+GGF+IAF +GWLLTL ML+SIP L ++G
Sbjct: 133 VGRMSGDTVLILDAMGEKVGKFIQLISTFVGGFVIAFLRGWLLTLVMLTSIPLLAMSGAA 192
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ +V +SQ+QAA + A+ VV QT+GSIRTVASFTGE+QA S Y + + +YKS+V++
Sbjct: 193 IAIIVTRASSQEQAAYAKASNVVEQTLGSIRTVASFTGEKQAMSSYKELINLAYKSNVKQ 252
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G TGLGLG + FS Y LG W+G ++IL KGY+GG V++V+ V+ S++LGQASPC
Sbjct: 253 GFVTGLGLGVMFLVFFSTYALGTWFGGEMILRKGYTGGAVINVMVTVVSSSIALGQASPC 312
Query: 345 LSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
L+ I R+P ID +NGK L+DIRG+IEL+DV FSYPARP E++
Sbjct: 313 LTAFTAGKAAAYKMFETIEREPLIDTFDLNGKVLEDIRGEIELRDVCFSYPARPKEEVFG 372
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF LLIP+GT ALVG SGSGKSTVISLI+RFYDP +G+VLIDGV+LKEFQLKWIR KIG
Sbjct: 373 GFSLLIPSGTTTALVGESGSGKSTVISLIERFYDPNSGQVLIDGVDLKEFQLKWIRGKIG 432
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL SSSI +NI YGK + FI LP GL+T VGEHG QL
Sbjct: 433 LVSQEPVLFSSSIMENIGYGKEGATVEEIQAASKLANAAKFIDKLPLGLETLVGEHGTQL 492
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTVIV+HRLS
Sbjct: 493 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVIVAHRLST 552
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPF 644
+RNA+IIAVI +GKIVE+G+HSELL++ GAY++L+RLQE KES++ + SD
Sbjct: 553 VRNADIIAVIHRGKIVEEGSHSELLKDHEGAYSQLLRLQEINKESKRLEI--SDGSISSG 610
Query: 645 ASPKITTPKQSETESD----FPASEKAKMPPD----VSLSRLAYLNSPEVPALLLGAIAS 696
+S + +Q + + KM + VS +R+A LN PE+P L+LG +
Sbjct: 611 SSRGNNSTRQDDDSFSVLGLLAGQDSTKMSQELSQKVSFTRIAALNKPEIPILILGTLVG 670
Query: 697 MTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVA 756
NG I PIFG++ A ++ + EL R S+ W+++FV LG A+++ P + Y FA+A
Sbjct: 671 AVNGTIFPIFGILFAKVIEAFFKAPHELKRDSRFWSMIFVLLGVAAVIVYPTTNYLFAIA 730
Query: 757 GCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNT 816
G +LI+RIRSMCFEKVV+MEVGWFDE +S+GA+GARLS+DAAL+R+LVGD+L L V+N
Sbjct: 731 GGRLIRRIRSMCFEKVVHMEVGWFDEPGNSSGAMGARLSADAALIRTLVGDSLCLSVKNV 790
Query: 817 ATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVASDA 876
A+ V GL+IAF A W+ GI G+IQ+K MKGFSA+A+ YEEASQVA+DA
Sbjct: 791 ASLVTGLIIAFTASWEVAIIILVIIPFIGINGYIQIKFMKGFSADAKAKYEEASQVANDA 850
Query: 877 VSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVG 936
V SIRTVASFCAEEKVM++YKK+CE IK+GI+Q YA FYVG
Sbjct: 851 VGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGFGISFFVLYSVYASCFYVG 910
Query: 937 AKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDS 996
A+LV + F +VF+VF AL++TA+GISQ +F +ID++SKIDS
Sbjct: 911 ARLVKAGRTNFNDVFQVFLALTLTAVGISQASSFAPDSSKGKGAAVSIFRIIDRISKIDS 970
Query: 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056
+ +G LENV G+++ +SF Y TRP ++VFRDLCL+I G+T+ALVGESGSGKSTVI
Sbjct: 971 RDESGMVLENVKGDIELCHISFTYQTRPDVQVFRDLCLSIRAGQTVALVGESGSGKSTVI 1030
Query: 1057 SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA-----EMA 1111
SLLQRFYDP SGHITLDGVE++KL++KWLRQQMG+V QEPVLF+DTIRANIA E A
Sbjct: 1031 SLLQRFYDPDSGHITLDGVELKKLRLKWLRQQMGLVGQEPVLFNDTIRANIAYGKGGEEA 1090
Query: 1112 NANGFI--SGLQEGYDTLVG-ERGVQLSGGQK--QRVAIARAIVKEPKILLLDEATSALD 1166
I S L + + ++G G++ Q + V + ++ + LD
Sbjct: 1091 TEAEIIAASELANAHRFISSIQKGYDTVVGERGIQLSGGQKQRVAIARAIVKEPKILLLD 1150
Query: 1167 IESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGI 1226
E+ + ++V+ D V+ +R +TI AH ++ + ++ + +I+ K G
Sbjct: 1151 -EATSALDAESERVVQDALDRVMVNR-TTIVVAHRLSTIKNADVIAVVKN-GVIAEK-GT 1206
Query: 1227 YTSLI 1231
+ +LI
Sbjct: 1207 HETLI 1211
|
|
| TAIR|locus:2141350 ABCB3 "ATP-binding cassette B3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 3037 (1074.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 611/1074 (56%), Positives = 778/1074 (72%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL SF+D D +LM+VG+I A GNG+ P + LLFGDL+DSIGQN + + V
Sbjct: 8 VPFYKLFSFSDSTDVLLMIVGSIGAIGNGVGFPLMTLLFGDLIDSIGQNQSNKDIVEIVS 67
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV KFVYL LG A+F QVACWMITGERQAARIRS YL+TILRQDI FFD E +TGEV
Sbjct: 68 KVCLKFVYLGLGTLGAAFLQVACWMITGERQAARIRSLYLKTILRQDIGFFDVETSTGEV 127
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LI +A+GEKVGKFIQ A+F+GGF++AF KGWLLTL ML SIP L IAG
Sbjct: 128 VGRMSGDTVLILEAMGEKVGKFIQLIATFVGGFVLAFVKGWLLTLVMLVSIPLLAIAGAA 187
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M +V +S++QAA + A+TVV QT+GSIRTVASFTGE+QA Y + + +Y++SV++
Sbjct: 188 MPIIVTRASSREQAAYAKASTVVEQTLGSIRTVASFTGEKQAMKSYREFINLAYRASVKQ 247
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G + GLGLG F+ F +Y L +W+G ++IL+KGY+GG+V++V+ V+ SMSLGQ +PC
Sbjct: 248 GFSMGLGLGVVFFVFFCSYALAIWFGGEMILKKGYTGGEVVNVMVTVVASSMSLGQTTPC 307
Query: 345 LSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
L+ I RKP ID +NGK L+DIRG+IEL+DV FSYPARP E++
Sbjct: 308 LTAFAAGKAAAYKMFETIERKPSIDAFDLNGKVLEDIRGEIELRDVCFSYPARPMEEVFG 367
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF LLIP+G AALVG SGSGKS+VISLI+RFYDP +G VLIDGVNLKEFQLKWIR KIG
Sbjct: 368 GFSLLIPSGATAALVGESGSGKSSVISLIERFYDPSSGSVLIDGVNLKEFQLKWIRGKIG 427
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL SSSI +NI YGK + ++FI LP+GL+T VGEHG QL
Sbjct: 428 LVSQEPVLFSSSIMENIGYGKENATVEEIQAAAKLANAANFIDKLPRGLETLVGEHGTQL 487
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPRILLLDEATSALD+ES R+VQEALDRVM++RTTVIV+HRLS
Sbjct: 488 SGGQKQRIAIARAILKDPRILLLDEATSALDAESERVVQEALDRVMMSRTTVIVAHRLST 547
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS--DSDNQ 642
+RNA++IAVI +GKIVE+G+HSELL++ GAY +LIRLQ+ KE ++ +N D
Sbjct: 548 VRNADMIAVIHRGKIVEEGSHSELLKDHEGAYAQLIRLQKIKKEPKRLESSNELRDRSIN 607
Query: 643 PFASPKITTPKQSETESD----FPASEKAKMPPD----VSLSRLAYLNSPEVPALLLGAI 694
+S I T + E ++ + VS++R+A LN PE L+LG +
Sbjct: 608 RGSSRNIRTRVHDDDSVSVLGLLGRQENTEISREQSRNVSITRIAALNKPETTILILGTL 667
Query: 695 ASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754
NG I PIFG++ A ++ +P ++ R S+ W+++FV LG ASL+ P+ Y FA
Sbjct: 668 LGAVNGTIFPIFGILFAKVIEAFFKPPHDMKRDSRFWSMIFVLLGVASLIVYPMHTYLFA 727
Query: 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQ 814
VAG +LI+RIR MCFEKVV+MEVGWFD+ ++S+G IG+RLS+DAAL+++LVGD+LSL V+
Sbjct: 728 VAGGRLIQRIRVMCFEKVVHMEVGWFDDPENSSGTIGSRLSADAALIKTLVGDSLSLSVK 787
Query: 815 NTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSANAENMYEEASQVAS 874
N A AV GL+IAF A W+ GI G++Q+K +KGF+A+A+ YEEASQVA+
Sbjct: 788 NAAAAVSGLIIAFTASWKLAVIILVMIPLIGINGYLQIKFIKGFTADAKAKYEEASQVAN 847
Query: 875 DAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFY 934
DAV SIRTVASFCAEEKVM++YKK+CE IK+GI+Q YA FY
Sbjct: 848 DAVGSIRTVASFCAEEKVMEMYKKRCEDTIKSGIKQGLISGVGFGISFFVLYSVYASCFY 907
Query: 935 VGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKI 994
VGA+LV + F +VF+VF AL+MTAIGISQ +FG+ID S I
Sbjct: 908 VGARLVKAGRTNFNDVFQVFLALTMTAIGISQASSFAPDSSKAKGAAASIFGIIDGKSMI 967
Query: 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST 1054
DS + +G LENV G+++ +SF Y TRP +++FRDLC I G+T+ALVGESGSGKST
Sbjct: 968 DSRDESGLVLENVKGDIELCHISFTYQTRPDVQIFRDLCFAIRAGQTVALVGESGSGKST 1027
Query: 1055 VISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA 1108
VISLLQRFYDP SGHITLD VE++KLQ+KW+RQQMG+V QEPVLF+DTIR+NIA
Sbjct: 1028 VISLLQRFYDPDSGHITLDRVELKKLQLKWVRQQMGLVGQEPVLFNDTIRSNIA 1081
|
|
| TAIR|locus:2196145 ABCB11 "ATP-binding cassette B11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1941 (688.3 bits), Expect = 0., Sum P(2) = 0.
Identities = 396/638 (62%), Positives = 480/638 (75%)
Query: 2 EHDDNNLDTSTGQAPDQSTGNFTDKRCDHERGMNINIITVNGRIPFHKLLSFADLLDSVL 61
E D + + ST ++P + G T K E N +PF+KL +FAD D +L
Sbjct: 8 EGDSVSHEPSTSKSPKE--GEETKKEEKSEEKANT--------VPFYKLFAFADSSDVLL 57
Query: 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121
M+ G+I A GNG+ +PF+ LLFGDL+DS G+N + V KV KFVYL LG A+
Sbjct: 58 MICGSIGAIGNGMSLPFMTLLFGDLIDSFGKNQNNKDIVDVVSKVCLKFVYLGLGTLGAA 117
Query: 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGE 181
F QVACWMITGERQAARIRS YL+TILRQDI FFD E NTGEVVGR+SGDT+LIQDA+GE
Sbjct: 118 FLQVACWMITGERQAARIRSTYLKTILRQDIGFFDVETNTGEVVGRMSGDTVLIQDAMGE 177
Query: 182 KVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADS 241
KVGKFIQ ++F+GGF++AF KGWLLTL ML+SIP L +AG M +V +S+ QAA +
Sbjct: 178 KVGKFIQLVSTFVGGFVLAFIKGWLLTLVMLTSIPLLAMAGAAMALIVTRASSRGQAAYA 237
Query: 242 LAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFS 301
AATVV QTIGSIRTVASFTGE+QA + Y K + +YKSS+Q+G +TGLGLG F+ FS
Sbjct: 238 KAATVVEQTIGSIRTVASFTGEKQAINSYKKFITSAYKSSIQQGFSTGLGLGVMFFVFFS 297
Query: 302 AYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSXXXXXXXXXXXXXXX 361
+Y L +W+G K+ILEKGY+GG V++VI V+ GSMSLGQ SPC++
Sbjct: 298 SYALAIWFGGKMILEKGYTGGAVINVIIIVVAGSMSLGQTSPCVTAFAAGQAAAYKMFET 357
Query: 362 INRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGT 421
I RKP ID VNGK L+DIRGDIELKDV+FSYPARPDE+I +GF L IP+G AALVG
Sbjct: 358 IKRKPLIDAYDVNGKVLEDIRGDIELKDVHFSYPARPDEEIFDGFSLFIPSGATAALVGE 417
Query: 422 SGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481
SGSGKSTVISLI+RFYDP++G VLIDGVNLKEFQLKWIR KIGLVSQEPVL SSSI +NI
Sbjct: 418 SGSGKSTVISLIERFYDPKSGAVLIDGVNLKEFQLKWIRSKIGLVSQEPVLFSSSIMENI 477
Query: 482 AYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541
AYGK + + FI LPQGLDT VGEHG QLSGGQKQR+AIARA++KD
Sbjct: 478 AYGKENATVEEIKAATELANAAKFIDKLPQGLDTMVGEHGTQLSGGQKQRIAIARAILKD 537
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
PRILLLDEATSALD+ES R+VQEALDRVM+NRTTVIV+HRLS +RNA++IAVI +GK+VE
Sbjct: 538 PRILLLDEATSALDAESERVVQEALDRVMVNRTTVIVAHRLSTVRNADMIAVIHRGKMVE 597
Query: 602 KGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDS 639
KG+HSELL++ GAY++LIRLQE K+ + S +++ S
Sbjct: 598 KGSHSELLKDSEGAYSQLIRLQEINKDVKTSELSSGSS 635
|
|
| TAIR|locus:2041434 ABCB4 "ATP-binding cassette B4" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1923 (682.0 bits), Expect = 0., Sum P(2) = 0.
Identities = 382/600 (63%), Positives = 462/600 (77%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+PF+KL +FAD D +LM++GT+ + GNGL P + LLFGDL+D+ G+N T T V
Sbjct: 46 VPFYKLFAFADSFDFLLMILGTLGSIGNGLGFPLMTLLFGDLIDAFGENQTNTT--DKVS 103
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV+ KFV+L +G A+F Q++ WMI+GERQAARIRS YL+TILRQDIAFFD + NTGEV
Sbjct: 104 KVALKFVWLGIGTFAAAFLQLSGWMISGERQAARIRSLYLKTILRQDIAFFDIDTNTGEV 163
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+LIQDA+GEKVGK IQ A+F+GGF+IAF +GWLLTL MLSSIP LV+AG +
Sbjct: 164 VGRMSGDTVLIQDAMGEKVGKAIQLLATFVGGFVIAFVRGWLLTLVMLSSIPLLVMAGAL 223
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
+ ++ AS+ Q A + AATVV QTIGSIRTVASFTGE+QA S YNK LV +YK+ V E
Sbjct: 224 LAIVIAKTASRGQTAYAKAATVVEQTIGSIRTVASFTGEKQAISNYNKHLVTAYKAGVIE 283
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG ++F +Y L VWYG KLIL+KGY+GG V+++I VL GSMSLGQ SPC
Sbjct: 284 GGSTGLGLGTLFLVVFCSYALAVWYGGKLILDKGYTGGQVLNIIIAVLTGSMSLGQTSPC 343
Query: 345 LSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
LS I R+P ID NGK LDDI+GDIELKDV F+YPARPDEQI
Sbjct: 344 LSAFAAGQAAAYKMFETIERRPNIDSYSTNGKVLDDIKGDIELKDVYFTYPARPDEQIFR 403
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L I +GT ALVG SGSGKSTV+SLI+RFYDPQAG+VLIDG+NLKEFQLKWIR KIG
Sbjct: 404 GFSLFISSGTTVALVGQSGSGKSTVVSLIERFYDPQAGDVLIDGINLKEFQLKWIRSKIG 463
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQL 524
LVSQEPVL ++SI+DNIAYGK S F+ LPQGLDT VGEHG QL
Sbjct: 464 LVSQEPVLFTASIKDNIAYGKEDATTEEIKAAAELANASKFVDKLPQGLDTMVGEHGTQL 523
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+A+ARA++KDPRILLLDEATSALD+ES R+VQEALDR+M+NRTTV+V+HRLS
Sbjct: 524 SGGQKQRIAVARAILKDPRILLLDEATSALDAESERVVQEALDRIMVNRTTVVVAHRLST 583
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPF 644
+RNA++IAVI QGKIVEKG+H+ELL++P GAY++LIRLQE K E +A S + F
Sbjct: 584 VRNADMIAVIHQGKIVEKGSHTELLKDPEGAYSQLIRLQEEKKSDENAAEEQKMSSIESF 643
|
|
| TAIR|locus:2196135 ABCB12 "ATP-binding cassette B12" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1909 (677.1 bits), Expect = 0., Sum P(2) = 0.
Identities = 377/583 (64%), Positives = 453/583 (77%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVL 104
+P +KL +FAD D LM+ G++ A GNG+C+P + LLFGDL+DS G+N + V
Sbjct: 28 VPLYKLFAFADSFDVFLMICGSLGAIGNGVCLPLMTLLFGDLIDSFGKNQNNKDIVDVVS 87
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
KV KFVYL LG A+F QVACWMITGERQAA+IRS YL+TILRQDI FFD E NTGEV
Sbjct: 88 KVCLKFVYLGLGRLGAAFLQVACWMITGERQAAKIRSNYLKTILRQDIGFFDVETNTGEV 147
Query: 165 VGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224
VGR+SGDT+ IQDA+GEKVGKFIQ ++F+GGF +AF KGWLLTL ML+SIP L +AG
Sbjct: 148 VGRMSGDTVHIQDAMGEKVGKFIQLVSTFVGGFALAFAKGWLLTLVMLTSIPFLAMAGAA 207
Query: 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284
M LV +S+ QAA + AATVV QTIGSIRTVASFTGE+QA + Y K + +YKSS+Q+
Sbjct: 208 MALLVTRASSRGQAAYAKAATVVEQTIGSIRTVASFTGEKQAINSYKKYITSAYKSSIQQ 267
Query: 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344
G +TGLGLG +++ FS+Y L +W+G K+ILEKGY+GG V++VI V+ GSMSLGQ SPC
Sbjct: 268 GFSTGLGLGVMIYVFFSSYALAIWFGGKMILEKGYTGGSVINVIIIVVAGSMSLGQTSPC 327
Query: 345 LSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
++ I RKP ID VNGK L DIRGDIELKDV+FSYPARPDE+I +
Sbjct: 328 VTAFAAGQAAAYKMFETIKRKPLIDAYDVNGKVLGDIRGDIELKDVHFSYPARPDEEIFD 387
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
GF L IP+G AALVG SGSGKSTVI+LI+RFYDP+AGEVLIDG+NLKEFQLKWIR KIG
Sbjct: 388 GFSLFIPSGATAALVGESGSGKSTVINLIERFYDPKAGEVLIDGINLKEFQLKWIRSKIG 447
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQL 524
LV QEPVL SSSI +NIAYGK + + FI NLPQGLDT VGEHG QL
Sbjct: 448 LVCQEPVLFSSSIMENIAYGKENATLQEIKVATELANAAKFINNLPQGLDTKVGEHGTQL 507
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQKQR+AIARA++KDPR+LLLDEATSALD+ES R+VQEALDRVM+NRTTV+V+HRLS
Sbjct: 508 SGGQKQRIAIARAILKDPRVLLLDEATSALDTESERVVQEALDRVMVNRTTVVVAHRLST 567
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCK 627
+RNA++IAVI GK+VEKG+HSELL++ GAY++LIR QE K
Sbjct: 568 VRNADMIAVIHSGKMVEKGSHSELLKDSVGAYSQLIRCQEINK 610
|
|
| TAIR|locus:2151496 ABCB7 "ATP-binding cassette B7" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1684 (597.9 bits), Expect = 0., Sum P(2) = 0.
Identities = 327/589 (55%), Positives = 433/589 (73%)
Query: 42 NGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIH 101
N RI F+KL +FAD D VLM++GT++A NGL PF+++L G L++ G + +
Sbjct: 15 NQRIAFYKLFTFADRYDIVLMVIGTLSAMANGLTQPFMSILMGQLINVFGFSDHDHV-FK 73
Query: 102 GVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINT 161
V KV+ KF+YLA AGV SF QV+CWM+TGERQ+ RIR YL+TILRQDI FFD E NT
Sbjct: 74 EVSKVAVKFLYLAAYAGVVSFLQVSCWMVTGERQSTRIRRLYLKTILRQDIGFFDTETNT 133
Query: 162 GEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIA 221
GEV+GR+SGDT+LIQD++GEKVGKF Q +SF+GGF +AF G LTL +L +P +V
Sbjct: 134 GEVIGRMSGDTILIQDSMGEKVGKFTQLVSSFVGGFTVAFIVGMKLTLALLPCVPLIVGT 193
Query: 222 GVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSS 281
G M ++ A + Q A + A VV Q +GSIRTV +FTGE+Q+ Y K L +YKS
Sbjct: 194 GGAMTYIMSKKAQRVQLAYTEAGNVVQQAVGSIRTVVAFTGEKQSMGKYEKKLEIAYKSM 253
Query: 282 VQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQA 341
V++GL +GLG+G + +++ YG +WYGA+ I+EKGY+GG VM+VI +L G M+LGQ
Sbjct: 254 VKQGLYSGLGIGIMMVVVYCTYGFAIWYGARQIIEKGYTGGQVMNVITSILTGGMALGQT 313
Query: 342 SPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQ 401
P L+ I RKP+ID ++G+ L++I+GDIEL+DV F YPARPD Q
Sbjct: 314 LPSLNSFAAGTAAAYKMFETIKRKPKIDAYDMSGEVLEEIKGDIELRDVYFRYPARPDVQ 373
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461
I GF L +PNG ALVG SGSGKSTVISLI+RFYDP++GEVLIDG++LK+FQ+KWIR
Sbjct: 374 IFVGFSLTVPNGMTVALVGQSGSGKSTVISLIERFYDPESGEVLIDGIDLKKFQVKWIRS 433
Query: 462 KIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
KIGLVSQEP+L +++IR+NI YGK S+FI LPQGL+T VGEHG
Sbjct: 434 KIGLVSQEPILFATTIRENIVYGKKDASDQEIRTALKLANASNFIDKLPQGLETMVGEHG 493
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHR 581
QLSGGQKQR+AIARA++K+P+ILLLDEATSALD+ES R+VQ+AL ++M++RTTV+V+HR
Sbjct: 494 TQLSGGQKQRIAIARAILKNPKILLLDEATSALDAESERIVQDALVKLMLSRTTVVVAHR 553
Query: 582 LSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESE 630
L+ IR A++IAV+QQGK++EKGTH E++++P G Y++L+RLQE K+ E
Sbjct: 554 LTTIRTADMIAVVQQGKVIEKGTHDEMIKDPEGTYSQLVRLQEGSKKEE 602
|
|
| TAIR|locus:2117656 ABCB9 "ATP-binding cassette B9" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2511 (889.0 bits), Expect = 6.1e-261, P = 6.1e-261
Identities = 545/1087 (50%), Positives = 707/1087 (65%)
Query: 42 NGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIH 101
N ++ F KL SFAD D VLM VGTIAA GNGL PF+ L+FG L+++ G + +
Sbjct: 13 NQKVSFFKLFSFADKTDVVLMTVGTIAAAGNGLTQPFMTLIFGQLINAFGTTDPDHM-VR 71
Query: 102 GVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINT 161
V KV+ KF+YLA+ + V +F QV+CWM+TGERQ+A IR YL+TILRQDI +FD E NT
Sbjct: 72 EVWKVAVKFIYLAVYSCVVAFLQVSCWMVTGERQSATIRGLYLKTILRQDIGYFDTETNT 131
Query: 162 GEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIA 221
GEV+GR+SGDT+LIQDA+GEKVGKF Q +F+GGF IAF+KG LL + S IP +VIA
Sbjct: 132 GEVIGRMSGDTILIQDAMGEKVGKFTQLLCTFLGGFAIAFYKGPLLAGVLCSCIPLIVIA 191
Query: 222 GVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSS 281
G M ++ +A + Q A + A VV QT+G+IRTV +FTGE+QA+ Y L +YK+
Sbjct: 192 GAAMSLIMSKMAGRGQVAYAEAGNVVEQTVGAIRTVVAFTGEKQATEKYESKLEIAYKTV 251
Query: 282 VQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQA 341
VQ+GL +G GLG + +IF +YGL VWYGAKLI+EKGY+GG V++VIF VL G MSLGQ
Sbjct: 252 VQQGLISGFGLGTMLAVIFCSYGLAVWYGAKLIMEKGYNGGQVINVIFAVLTGGMSLGQT 311
Query: 342 SPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQ 401
SP L+ I R P+ID ++G L+DIRGDIELKDV F YPARPD Q
Sbjct: 312 SPSLNAFAAGRAAAFKMFETIKRSPKIDAYDMSGSVLEDIRGDIELKDVYFRYPARPDVQ 371
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461
I GF L +PNG ALVG SGSGKSTVISLI+RFYDP++G+VLID ++LK+ QLKWIR
Sbjct: 372 IFAGFSLFVPNGKTVALVGQSGSGKSTVISLIERFYDPESGQVLIDNIDLKKLQLKWIRS 431
Query: 462 KIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHG 521
KIGLVSQEPVL +++I++NIAYGK + FI LPQGLDT VGEHG
Sbjct: 432 KIGLVSQEPVLFATTIKENIAYGKEDATDQEIRTAIELANAAKFIDKLPQGLDTMVGEHG 491
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHR 581
Q+SGGQKQR+AIARA++K+P+ILLLDEATSALD+ES R+VQ+AL +M NRTTV+V+HR
Sbjct: 492 TQMSGGQKQRLAIARAILKNPKILLLDEATSALDAESERIVQDALVNLMSNRTTVVVAHR 551
Query: 582 LSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKE----SEKSA---- 633
L+ IR A++IAV+ QGKIVEKGTH E++++P GAY++L+RLQE KE SE+
Sbjct: 552 LTTIRTADVIAVVHQGKIVEKGTHDEMIQDPEGAYSQLVRLQEGSKEEATESERPETSLD 611
Query: 634 VNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYL----NSPEVPAL 689
V S S A + + S + F + P V++++ + N+ +
Sbjct: 612 VERSGSLRLSSAMRRSVSRNSSSSRHSFSLASNMFFP-GVNVNQTDEMEDEENNVRHKKV 670
Query: 690 LLGAIASMTNGIIIPIFGV-MLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPL 748
L +A + N IP+ + +AAMV+ P L+ S MF S
Sbjct: 671 SLKRLAHL-NKPEIPVLVLGSIAAMVHGTVFPIFGLLLSSS--INMFYEPAKILKKDSHF 727
Query: 749 SMYCFAVAGCK--LIKRIRSMCFE----KVVY-MEVGWFDEADHSTGAIGARLSSDAALV 801
+ G ++ +++ F K++ + FD+ H D A
Sbjct: 728 WALIYIALGLTNFVMIPVQNYFFGIAGGKLIKRIRSMCFDKVVHQE----ISWFDDTANS 783
Query: 802 RSLVGDTLSLLVQNTATAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKSMKGFSAN 861
RSLVGD L+L+VQN AT GL+IAF A W I G+ Q K + GFSA+
Sbjct: 784 RSLVGDALALIVQNIATVTTGLIIAFTANWILALIVLALSPFIVIQGYAQTKFLTGFSAD 843
Query: 862 AENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXX 921
A+ MYEEASQVA+DAVSSIRTVASFCAEEKVM LY++KC+GP K G+R
Sbjct: 844 AKAMYEEASQVANDAVSSIRTVASFCAEEKVMDLYQQKCDGPKKNGVRLGLLSGAGFGFS 903
Query: 922 XXXXXXAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXX 981
V F GA L+ +ATF EVF+VFFAL++ AIG+SQT
Sbjct: 904 FFFLYCINCVCFVSGAGLIQIGKATFGEVFKVFFALTIMAIGVSQTSAMAPDSNKAKDSA 963
Query: 982 XXVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKT 1041
+F ++D KIDSS G TL+NV G+++F VSF+YP RP +++FRDLCLTIP GKT
Sbjct: 964 ASIFDILDSTPKIDSSSDEGTTLQNVNGDIEFRHVSFRYPMRPDVQIFRDLCLTIPSGKT 1023
Query: 1042 IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101
+ALVGESGSGKSTVIS+++RFY+P SG I +D VEIQ ++ WLRQQMG+VSQEP+LF++
Sbjct: 1024 VALVGESGSGKSTVISMIERFYNPDSGKILIDQVEIQTFKLSWLRQQMGLVSQEPILFNE 1083
Query: 1102 TIRANIA 1108
TIR+NIA
Sbjct: 1084 TIRSNIA 1090
|
|
| TAIR|locus:2090734 ABCB19 "ATP-binding cassette B19" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1322 (470.4 bits), Expect = 1.7e-244, Sum P(2) = 1.7e-244
Identities = 267/581 (45%), Positives = 365/581 (62%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKT-LAIHGV 103
+PF KL SFAD D +LM VG++ A +G +P LLFG +++ G+N +H V
Sbjct: 24 LPFFKLFSFADKFDYLLMFVGSLGAIVHGSSMPVFFLLFGQMVNGFGKNQMDLHQMVHEV 83
Query: 104 LKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGE 163
+ S FVYL L +S+ ++ACWM +GERQ A +R YLE +L+QD+ FFD + TG+
Sbjct: 84 SRYSLYFVYLGLVVCFSSYAEIACWMYSGERQVAALRKKYLEAVLKQDVGFFDTDARTGD 143
Query: 164 VVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223
+V +S DTLL+QDAI EKVG FI + ++F+ G ++ F W L L ++ IP + AG
Sbjct: 144 IVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWKLALLSVAVIPGIAFAGG 203
Query: 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283
+ + + S+ + + + A + Q I +RTV S+ GE +A + Y+ + + K +
Sbjct: 204 LYAYTLTGITSKSRESYANAGVIAEQAIAQVRTVYSYVGESKALNAYSDAIQYTLKLGYK 263
Query: 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASP 343
G+A GLGLG + I ++ L WY I GG + IF ++G MSLGQ+
Sbjct: 264 AGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFS 323
Query: 344 CLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQIL 403
L IN++P I ++GK LD + G+IE KDV FSYP+RPD I
Sbjct: 324 NLGAFSKGKAAGYKLMEIINQRPTIIQDPLDGKCLDQVHGNIEFKDVTFSYPSRPDVMIF 383
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463
F + P+G A+VG SGSGKSTV+SLI+RFYDP +G++L+DGV +K QLK++RE+I
Sbjct: 384 RNFNIFFPSGKTVAVVGGSGSGKSTVVSLIERFYDPNSGQILLDGVEIKTLQLKFLREQI 443
Query: 464 GLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGIQ 523
GLV+QEP L +++I +NI YGK FI LP+G DT VGE G+Q
Sbjct: 444 GLVNQEPALFATTILENILYGKPDATMVEVEAAASAANAHSFITLLPKGYDTQVGERGVQ 503
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGGQKQR+AIARAM+KDP+ILLLDEATSALD+ S +VQEALDRVM+ RTTV+V+HRL
Sbjct: 504 LSGGQKQRIAIARAMLKDPKILLLDEATSALDASSESIVQEALDRVMVGRTTVVVAHRLC 563
Query: 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624
IRN + IAVIQQG++VE GTH EL+ GAY LIR QE
Sbjct: 564 TIRNVDSIAVIQQGQVVETGTHEELIAKS-GAYASLIRFQE 603
|
|
| TAIR|locus:2019958 PGP10 "P-glycoprotein 10" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2344 (830.2 bits), Expect = 3.0e-243, P = 3.0e-243
Identities = 508/1210 (41%), Positives = 740/1210 (61%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIG-QNATKTLAIHGV 103
+ F KL SFAD D VLM +G+I A +G VP + FG L++ IG A H V
Sbjct: 24 VSFLKLFSFADFYDCVLMALGSIGACIHGASVPVFFIFFGKLINIIGLAYLFPQEASHKV 83
Query: 104 LKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGE 163
K S FVYL++ +S+ +VACWM TGERQAA+IR YL ++L QDI+ FD EI+TGE
Sbjct: 84 AKYSLDFVYLSVVILFSSWLEVACWMHTGERQAAKIRKAYLRSMLSQDISLFDTEISTGE 143
Query: 164 VVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223
V+ I+ + L++QDAI EKVG F+ F + FI GF I F W ++L LS +P + +AG
Sbjct: 144 VISAITSEILVVQDAISEKVGNFMHFISRFIAGFAIGFASVWQISLVTLSIVPFIALAGG 203
Query: 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283
+ + L + + + A + + IG++RTV +FTGE++A S Y L +Y +
Sbjct: 204 IYAFVSSGLIVRVRKSYVKANEIAEEVIGNVRTVQAFTGEEKAVSSYQGALRNTYNYGRK 263
Query: 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYS-GGDVMSVIFGVLIGSMSLGQAS 342
GLA GLGLG+ F++F ++ L +W+ +++ KG + GG+ + + V+I +SLGQA+
Sbjct: 264 AGLAKGLGLGSLHFVLFLSWALLIWF-TSIVVHKGIANGGESFTTMLNVVIAGLSLGQAA 322
Query: 343 PCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQI 402
P +S I R E D G+KL ++ GDI KDV F+YP+RPD I
Sbjct: 323 PDISTFMRASAAAYPIFQMIERNTE-DK---TGRKLGNVNGDILFKDVTFTYPSRPDVVI 378
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
+ +IP G + ALVG SGSGKST+ISLI+RFY+P G V++DG +++ LKW+R
Sbjct: 379 FDKLNFVIPAGKVVALVGGSGSGKSTMISLIERFYEPTDGAVMLDGNDIRYLDLKWLRGH 438
Query: 463 IGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGEHGI 522
IGLV+QEPVL +++IR+NI YGK FI NLP+G +T VGE GI
Sbjct: 439 IGLVNQEPVLFATTIRENIMYGKDDATSEEITNAAKLSEAISFINNLPEGFETQVGERGI 498
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582
QLSGGQKQR++I+RA++K+P ILLLDEATSALD+ES ++VQEALDRVM+ RTTV+V+HRL
Sbjct: 499 QLSGGQKQRISISRAIVKNPSILLLDEATSALDAESEKIVQEALDRVMVGRTTVVVAHRL 558
Query: 583 SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDS--- 639
S +RNA+IIAV+ GKI+E G+H EL+ NP GAY+ L+R+QE + +N++ S
Sbjct: 559 STVRNADIIAVVGGGKIIESGSHDELISNPDGAYSSLLRIQEAASPN----LNHTPSLPV 614
Query: 640 DNQPFASPKITTPKQSETES-DFPASEK-AKMPPDVSLSRLAYLNSPEVPALLLGAIASM 697
+P IT S +S + P + K AK V++ RL + P+ L G + S
Sbjct: 615 STKPLPELPITETTSSIHQSVNQPDTTKQAK----VTVGRLYSMIRPDWKYGLCGTLGSF 670
Query: 698 TNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAG 757
G +P+F + +A + + E K +++F +++ + F + G
Sbjct: 671 IAGSQMPLFALGIAQALVSYYMDWETTQNEVKRISILFCCGSVITVIVHTIEHTTFGIMG 730
Query: 758 CKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTA 817
+L R+R F ++ E+GWFD+ D+++ + +RL SDA L+R++V D ++L++N
Sbjct: 731 ERLTLRVRQKMFSAILRNEIGWFDKVDNTSSMLASRLESDATLLRTIVVDRSTILLENLG 790
Query: 818 TAVVGLVIAFKACWQXXXXXXXXXXXXGITGHIQMKS-MKGFSANAENMYEEASQVASDA 876
V +I+F W+ I+GHI K M+G+ N Y +A+ +A ++
Sbjct: 791 LVVTAFIISFILNWRLTLVVLATYPLI-ISGHISEKIFMQGYGGNLSKAYLKANMLAGES 849
Query: 877 VSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQXXXXXXXXXXXXXXXXXAYAVTFYVG 936
+S+IRTV +FCAEEKV+ LY K+ P + R+ +Y + + G
Sbjct: 850 ISNIRTVVAFCAEEKVLDLYSKELLEPSERSFRRGQMAGILYGVSQFFIFSSYGLALWYG 909
Query: 937 AKLVDHKQATFTEVFRVFFALSMTAIGISQTXXXXXXXXXXXXXXXXVFGLIDQVSKIDS 996
+ L++ ++F V + F L +TA+ + + VF L+D+ +++
Sbjct: 910 SILMEKGLSSFESVMKTFMVLIVTALVMGEVLALAPDLLKGNQMVVSVFELLDRRTQVVG 969
Query: 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056
TG L NV G ++ V F YP+RP + +F D L +P GK++ALVG+SGSGKS+V+
Sbjct: 970 D--TGEELSNVEGTIELKGVHFSYPSRPDVTIFSDFNLLVPSGKSMALVGQSGSGKSSVL 1027
Query: 1057 SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------- 1107
SL+ RFYDP++G I +DG +I+KL++K LR+ +G+V QEP LF+ TI NI
Sbjct: 1028 SLVLRFYDPTAGIIMIDGQDIKKLKLKSLRRHIGLVQQEPALFATTIYENILYGKEGASE 1087
Query: 1108 ------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161
A++ANA+ FIS L EGY T VGERG+Q+SGGQ+QR+AIARA++K P+ILLLDEA
Sbjct: 1088 SEVMEAAKLANAHSFISSLPEGYSTKVGERGIQMSGGQRQRIAIARAVLKNPEILLLDEA 1147
Query: 1162 TSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221
TSALD+ESERVVQ ALD++M DRTT+VVAHRLSTIKN+ +I+V+ G I+E+GSH L+
Sbjct: 1148 TSALDVESERVVQQALDRLMRDRTTVVVAHRLSTIKNSDMISVIQDGKIIEQGSHNILVE 1207
Query: 1222 TKNGIYTSLI 1231
KNG Y+ LI
Sbjct: 1208 NKNGPYSKLI 1217
|
|
| UNIPROTKB|Q0JCP1 Os04g0459000 "Os04g0459000 protein" [Oryza sativa Japonica Group (taxid:39947)] | Back alignment and assigned GO terms |
|---|
Score = 1297 (461.6 bits), Expect = 5.9e-242, Sum P(2) = 5.9e-242
Identities = 265/592 (44%), Positives = 367/592 (61%)
Query: 41 VNGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAI 100
V+ + FH+L FAD LD +LM G+ A +G +P LLFG+L++ G+N +
Sbjct: 25 VDQSVAFHELFGFADPLDWLLMAAGSAGAVVHGAAMPVFFLLFGELINGFGKNQHSLRRM 84
Query: 101 HG-VLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEI 159
V K S FVYL L +S+ ++ACWM TGERQ +R YLE +LRQD+ FFD +
Sbjct: 85 TDEVSKYSLYFVYLGLVVCASSYLEIACWMYTGERQVGALRRRYLEAVLRQDVGFFDTDA 144
Query: 160 NTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLV 219
TG+VV +S DTLL+QDAIGEKVG FI + ++F+ G ++ F W L L ++ IP +
Sbjct: 145 RTGDVVFSVSTDTLLVQDAIGEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSIAVIPGIA 204
Query: 220 IAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYK 279
AG + + L S+ + + + A + Q I +RTV S+ GE +A + Y++ + + K
Sbjct: 205 FAGGLYAYTLTGLTSKSRDSYANAGIIAEQAIAQVRTVYSYVGESKALNSYSEAIQNTLK 264
Query: 280 SSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLG 339
+ G+A GLG+G + I ++ L WY I GG + IF ++G +SLG
Sbjct: 265 LGYKAGMAKGLGIGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGLSLG 324
Query: 340 QASPCLSXXXXXXXXXXXXXXXINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPD 399
Q+ L I ++P I +G+ LD++ G+IE K+V FSYP+RPD
Sbjct: 325 QSFSNLGAFSKGKIAGYKLLEVIRQRPTIVQDPADGRCLDEVHGNIEFKEVAFSYPSRPD 384
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459
I F L P G AA+VG SGSGKSTV++LI+RFYDP G+VL+D V++K QLKW+
Sbjct: 385 VMIFRDFSLFFPAGKTAAVVGGSGSGKSTVVALIERFYDPNQGQVLLDNVDIKTLQLKWL 444
Query: 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHXXXXXXXXXXXXXXXSHFIKNLPQGLDTNVGE 519
R++IGLV+QEP L +++I +NI YGK FI LP G +T VGE
Sbjct: 445 RDQIGLVNQEPALFATTILENILYGKPDATMAEVEAAATSANAHSFIALLPNGYNTQVGE 504
Query: 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVS 579
G+QLSGGQKQR+AIARAM+K+P+ILLLDEATSALD+ S +VQEALDR+M+ RTTV+V+
Sbjct: 505 RGLQLSGGQKQRIAIARAMLKNPKILLLDEATSALDAGSENIVQEALDRLMVGRTTVVVA 564
Query: 580 HRLSLIRNANIIAVIQQGKIVEKGTHSELL-ENPYGAYNRLIRLQETCKESE 630
HRLS IR ++IAVIQQG++VE GTH ELL + GAY LIR QE + +
Sbjct: 565 HRLSTIRCVDMIAVIQQGQVVETGTHDELLAKGSSGAYAALIRFQEMARNRD 616
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries 
Original result of BLAST against SWISS-PROT
ID ![]() | Name ![]() | Annotated EC number ![]() | Identity ![]() | Query coverage ![]() | Hit coverage ![]() | RBH(Q2H) ![]() | RBH(H2Q) ![]() |
| P36619 | PMD1_SCHPO | No assigned EC number | 0.3554 | 0.9546 | 0.8663 | yes | no |
| P21448 | MDR1_CRIGR | 3, ., 6, ., 3, ., 4, 4 | 0.4048 | 0.9530 | 0.9231 | yes | no |
| P08183 | MDR1_HUMAN | 3, ., 6, ., 3, ., 4, 4 | 0.3985 | 0.9530 | 0.9203 | yes | no |
| P21447 | MDR1A_MOUSE | 3, ., 6, ., 3, ., 4, 4 | 0.4032 | 0.9522 | 0.9224 | yes | no |
| Q54BT3 | ABCB2_DICDI | No assigned EC number | 0.4223 | 0.9587 | 0.8482 | yes | no |
| Q9FWX7 | AB11B_ARATH | No assigned EC number | 0.6493 | 0.9644 | 0.9327 | yes | no |
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1236 | |||
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-130 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-128 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-127 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 1e-120 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-120 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 1e-119 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 1e-112 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-109 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 1e-107 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-105 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 1e-104 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 1e-104 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 1e-100 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 1e-100 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-94 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 4e-94 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 2e-93 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-91 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-91 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 3e-89 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 6e-86 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 4e-83 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 4e-81 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 2e-80 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 9e-78 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 6e-77 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 2e-76 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-75 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 4e-74 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-72 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 3e-72 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 4e-72 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 1e-71 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 8e-70 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-68 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-64 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 2e-64 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 2e-63 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 1e-62 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 2e-62 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 5e-62 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 2e-61 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 5e-61 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 1e-60 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 2e-58 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 3e-57 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 4e-57 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 6e-57 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 8e-57 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 8e-56 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-55 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 1e-54 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 3e-54 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 1e-53 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-53 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 4e-53 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 7e-52 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 8e-52 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 7e-51 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 3e-50 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-50 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 2e-48 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-48 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 3e-47 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 2e-46 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 3e-46 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-43 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 2e-43 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 7e-43 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 7e-42 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 7e-42 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-42 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 4e-41 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 5e-41 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 1e-40 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 1e-40 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 1e-40 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 1e-40 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-40 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 3e-40 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 6e-40 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 7e-40 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 9e-40 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 9e-40 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 9e-40 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-39 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 2e-39 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 2e-39 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 4e-39 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 5e-39 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-39 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 1e-38 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 3e-38 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-38 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 4e-38 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 5e-38 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 7e-38 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 8e-38 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 1e-37 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-37 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 2e-37 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 2e-37 | |
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 4e-37 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-37 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 8e-37 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 8e-37 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 1e-36 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-36 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-36 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 3e-36 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 5e-36 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 2e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-35 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 3e-35 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 4e-35 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 5e-35 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 5e-35 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 7e-35 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 8e-35 | |
| pfam00664 | 274 | pfam00664, ABC_membrane, ABC transporter transmemb | 9e-35 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 9e-35 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 1e-34 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-34 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 2e-34 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 2e-34 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 2e-34 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 2e-34 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 3e-34 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 4e-34 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 5e-34 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 9e-34 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-33 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 2e-33 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 2e-33 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-33 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 4e-33 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 6e-33 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 7e-33 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 2e-32 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 2e-32 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 2e-32 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-32 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 4e-32 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 7e-32 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 8e-32 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 9e-32 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 9e-32 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 1e-31 | |
| cd03288 | 257 | cd03288, ABCC_SUR2, ATP-binding cassette domain 2 | 2e-31 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-31 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 2e-31 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 2e-31 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-31 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-31 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 3e-31 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 3e-31 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 6e-31 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 6e-31 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 6e-31 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-30 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-30 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 2e-30 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 2e-30 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 2e-30 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 3e-30 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-30 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 6e-30 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 7e-30 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 8e-30 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 8e-30 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 1e-29 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-29 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 2e-29 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 2e-29 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-29 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 2e-29 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 3e-29 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-29 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 4e-29 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 4e-29 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 6e-29 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 6e-29 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 6e-29 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 7e-29 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 7e-29 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 1e-28 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 1e-28 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 1e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 2e-28 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 3e-28 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 3e-28 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 3e-28 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 3e-28 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 4e-28 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-28 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 4e-28 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 4e-28 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 6e-28 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 7e-28 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 7e-28 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 8e-28 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 9e-28 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 1e-27 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 1e-27 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 1e-27 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-27 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 2e-27 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 3e-27 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 3e-27 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 3e-27 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-27 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 6e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 6e-27 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 7e-27 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 7e-27 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 8e-27 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 8e-27 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 1e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-26 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 1e-26 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 1e-26 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 1e-26 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-26 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 1e-26 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-26 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 2e-26 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 2e-26 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 2e-26 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 2e-26 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 3e-26 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 3e-26 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 3e-26 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 4e-26 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 4e-26 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-26 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 7e-26 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 8e-26 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 9e-26 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 9e-26 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 9e-26 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-25 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-25 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 1e-25 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 2e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 2e-25 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 3e-25 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 3e-25 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 6e-25 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 6e-25 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 7e-25 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 7e-25 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 8e-25 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 8e-25 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 8e-25 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 9e-25 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-24 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 2e-24 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 2e-24 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-24 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 2e-24 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 3e-24 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 3e-24 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 4e-24 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 4e-24 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 5e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 5e-24 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 5e-24 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 5e-24 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 6e-24 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-24 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-24 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 7e-24 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 8e-24 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 8e-24 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 8e-24 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 1e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 1e-23 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 1e-23 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 2e-23 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-23 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-23 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-23 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-23 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 2e-23 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 2e-23 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 2e-23 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-23 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-23 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 3e-23 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 3e-23 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 4e-23 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-23 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 4e-23 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 5e-23 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-23 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 6e-23 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 7e-23 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 7e-23 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 9e-23 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 9e-23 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 9e-23 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 9e-23 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 1e-22 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 1e-22 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 1e-22 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 1e-22 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 1e-22 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 2e-22 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 2e-22 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 2e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 2e-22 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 2e-22 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-22 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 3e-22 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 3e-22 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 4e-22 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 4e-22 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 5e-22 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 5e-22 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 5e-22 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 6e-22 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 6e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 6e-22 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-22 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 7e-22 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 7e-22 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 8e-22 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 8e-22 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 8e-22 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 8e-22 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 8e-22 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 9e-22 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 9e-22 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 1e-21 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 1e-21 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 1e-21 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 1e-21 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-21 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 1e-21 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 1e-21 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 1e-21 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 2e-21 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 2e-21 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 2e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-21 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 2e-21 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 3e-21 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 3e-21 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 3e-21 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 3e-21 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 4e-21 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 5e-21 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 6e-21 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 6e-21 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 7e-21 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 8e-21 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 8e-21 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 8e-21 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 9e-21 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 1e-20 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 1e-20 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 1e-20 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 1e-20 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 1e-20 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 1e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 1e-20 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 2e-20 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-20 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-20 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 2e-20 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 3e-20 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 3e-20 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 3e-20 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 4e-20 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-20 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 4e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 4e-20 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 4e-20 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 6e-20 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 6e-20 | |
| PTZ00243 | 1560 | PTZ00243, PTZ00243, ABC transporter; Provisional | 6e-20 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 6e-20 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 7e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 7e-20 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 7e-20 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 7e-20 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 8e-20 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 9e-20 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 1e-19 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 1e-19 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 1e-19 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 2e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-19 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 2e-19 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 3e-19 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-19 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-19 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 3e-19 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 3e-19 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 3e-19 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-19 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 4e-19 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 4e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 5e-19 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 8e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 8e-19 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 8e-19 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 8e-19 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 8e-19 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 9e-19 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 1e-18 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 1e-18 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 1e-18 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 1e-18 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 1e-18 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 1e-18 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 2e-18 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 2e-18 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 2e-18 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-18 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 2e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-18 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 3e-18 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 3e-18 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 4e-18 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 4e-18 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-18 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 4e-18 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 4e-18 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 4e-18 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 4e-18 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 4e-18 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 4e-18 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 5e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 5e-18 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 5e-18 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 6e-18 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-18 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 6e-18 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 6e-18 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 7e-18 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-18 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 9e-18 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 1e-17 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 1e-17 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 1e-17 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-17 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 2e-17 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 2e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 2e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 2e-17 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 3e-17 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 3e-17 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 3e-17 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 3e-17 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 4e-17 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 4e-17 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 4e-17 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 4e-17 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-17 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-17 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 5e-17 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 6e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 7e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 7e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 8e-17 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-17 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 1e-16 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 1e-16 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-16 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 1e-16 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 2e-16 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 2e-16 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-16 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 3e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 3e-16 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-16 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 3e-16 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 3e-16 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 3e-16 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 4e-16 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 4e-16 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 4e-16 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 4e-16 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 5e-16 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 6e-16 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 7e-16 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 8e-16 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 8e-16 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 1e-15 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 1e-15 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-15 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-15 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-15 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 1e-15 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 1e-15 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-15 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 2e-15 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-15 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 3e-15 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 3e-15 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 3e-15 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 3e-15 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 4e-15 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 4e-15 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 4e-15 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 4e-15 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 5e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-15 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 5e-15 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 5e-15 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 6e-15 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 7e-15 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 8e-15 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 9e-15 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 9e-15 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 1e-14 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 1e-14 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-14 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 2e-14 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 2e-14 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 2e-14 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-14 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 3e-14 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 3e-14 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 3e-14 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 4e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 4e-14 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 6e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 6e-14 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 7e-14 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 8e-14 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 9e-14 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 1e-13 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 1e-13 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 1e-13 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 1e-13 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 1e-13 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 2e-13 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 3e-13 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 3e-13 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 4e-13 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 4e-13 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 5e-13 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 5e-13 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-13 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 7e-13 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 8e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 9e-13 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 9e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 1e-12 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 1e-12 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 1e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-12 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-12 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 2e-12 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-12 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 2e-12 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-12 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 3e-12 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 3e-12 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-12 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 3e-12 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 3e-12 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 4e-12 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 4e-12 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 5e-12 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 5e-12 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 5e-12 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 6e-12 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 6e-12 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 7e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-12 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 1e-11 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 1e-11 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 1e-11 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-11 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 1e-11 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-11 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-11 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 2e-11 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 2e-11 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 2e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 2e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 3e-11 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 3e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-11 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 3e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 3e-11 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 4e-11 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-11 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 5e-11 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 6e-11 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 8e-11 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 8e-11 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 9e-11 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 1e-10 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 1e-10 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-10 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 1e-10 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-10 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-10 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-10 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 4e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 4e-10 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 4e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 4e-10 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 5e-10 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-10 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 6e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 8e-10 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 9e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 9e-10 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-09 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 1e-09 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 1e-09 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 1e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 1e-09 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-09 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 2e-09 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 2e-09 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 2e-09 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 2e-09 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 3e-09 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 3e-09 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 3e-09 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 5e-09 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 5e-09 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 6e-09 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 8e-09 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 8e-09 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 1e-08 | |
| cd03233 | 202 | cd03233, ABCG_PDR_domain1, First domain of the ple | 1e-08 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 1e-08 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 2e-08 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 2e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 2e-08 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-08 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 4e-08 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 7e-08 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 8e-08 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 8e-08 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 9e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 9e-08 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 1e-07 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 1e-07 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 1e-07 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-07 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-07 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 2e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 2e-07 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-07 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 3e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 3e-07 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 5e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 5e-07 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 5e-07 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 6e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 6e-07 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 8e-07 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 8e-07 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-06 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 2e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 2e-06 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 2e-06 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 2e-06 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 2e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 2e-06 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 3e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 3e-06 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 4e-06 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 5e-06 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-06 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 1e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 1e-05 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 2e-05 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 3e-05 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-05 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 6e-05 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 6e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 7e-05 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-05 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 9e-05 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 9e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 1e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 1e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 1e-04 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 2e-04 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 2e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 3e-04 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 4e-04 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 4e-04 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 5e-04 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-04 | |
| PRK13546 | 264 | PRK13546, PRK13546, teichoic acids export protein | 8e-04 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 9e-04 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 0.001 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 0.001 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 0.001 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.001 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 0.002 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.002 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 0.002 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 0.002 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 0.003 | |
| pfam13558 | 79 | pfam13558, SbcCD_C, Putative exonuclease SbcCD, C | 0.003 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 412 bits (1060), Expect = e-130
Identities = 208/558 (37%), Positives = 317/558 (56%), Gaps = 18/558 (3%)
Query: 78 FVALLFGDLMD-SIGQNATKTLAIHGVLKVSKK--------FVYLALGAGVASFFQVACW 128
VALL S+ A + + HG K S + +AL + + +
Sbjct: 24 LVALLITAAATLSLPY-AVRLMIDHGFSKDSSGLLNRYFAFLLVVALVLALGTAARFYLV 82
Query: 129 MITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQ 188
GER A IR ++ +FFDK +GEVV R++ DT L+Q IG + ++
Sbjct: 83 TWLGERVVADIRRAVFAHLISLSPSFFDK-NRSGEVVSRLTTDTTLLQSVIGSSLSMALR 141
Query: 189 FGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMI-KLVGNLASQKQAADSLAATV- 246
IGG ++ F LT +L ++P LV+ +++ + V L+ + Q D +A
Sbjct: 142 NALMCIGGLIMMFITSPKLTSLVLLAVP-LVLLPILLFGRRVRKLSRESQ--DRIADAGS 198
Query: 247 -VAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGL 305
+T+G+IRTV +F E S + + K+Y+++ Q L + ++F A
Sbjct: 199 YAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRALLTAIVIVLVFGAIVG 258
Query: 306 GVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365
+W GA ++ S G + +F ++ + S+G S AA + E + +
Sbjct: 259 VLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318
Query: 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSG 425
P+I +RG+IE + VNF+YPARPD+ L+G L + G ALVG SG+G
Sbjct: 319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAG 378
Query: 426 KSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK 485
KST+ L+ RFYDPQ+G +L+DGV+L++ +R ++ LV Q+PVL ++S+ +NI YG+
Sbjct: 379 KSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGR 438
Query: 486 THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
AT EE++AAA AA+A FI LP+G DT +GE G+ LSGGQ+QR+AIARA++KD IL
Sbjct: 439 PDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQRIAIARAILKDAPIL 498
Query: 546 LLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605
LLDEATSALD+ES ++VQ+AL+ +M RTT+I++HRL+ + A+ I V+ QG+IV +GTH
Sbjct: 499 LLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558
Query: 606 SELLENPYGAYNRLIRLQ 623
+EL+ G Y RL RLQ
Sbjct: 559 AELIAKG-GLYARLARLQ 575
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 406 bits (1044), Expect = e-128
Identities = 190/582 (32%), Positives = 316/582 (54%), Gaps = 16/582 (2%)
Query: 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGV 103
+LL + +L ++ + + L +P LL G ++D++ + + L + +
Sbjct: 1 LSLLRRLLKYLKYKLLLLAILLLLLSALLSLLLP---LLIGRIIDALLADLGELLELLLL 57
Query: 104 LKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGE 163
L + LAL GV Q G++ A +R E +LR ++FFDK +G+
Sbjct: 58 L------LLLALLGGVLRALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGD 110
Query: 164 VVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223
++ R++ D + + + + IG ++ F W L L +L +P L +
Sbjct: 111 LISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLS 170
Query: 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283
++ + L+ + + A + +++ IR + +F E + + + + +++++
Sbjct: 171 LLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLR 230
Query: 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASP 343
L + + L + G L+L + G + + I +L + Q
Sbjct: 231 ASRLEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGE 290
Query: 344 CLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQIL 403
+S AAA + FE ++ +PE++ L D G IE ++V+FSYP + +L
Sbjct: 291 VVSLLQRASAAAERLFELLDEEPEVED---PPDPLKDTIGSIEFENVSFSYP--GKKPVL 345
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463
I G A+VG SGSGKST+I L+ R YDP +GE+LIDG+++++ L +R++I
Sbjct: 346 KDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRI 405
Query: 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523
G+VSQ+P+L S +IR+NIA G+ AT EEI+ A + ANA FI NLP G DT VGE G+
Sbjct: 406 GIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVN 465
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGGQ+QR+AIARA++++P IL+LDEATSALD+E+ ++Q+AL +++ RTT+I++HRLS
Sbjct: 466 LSGGQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLS 525
Query: 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQET 625
I+NA+ I V+ G+IVE+GTH ELL G Y RL + Q
Sbjct: 526 TIKNADRIIVLDNGRIVERGTHEELLAKG-GLYARLYQAQGG 566
|
Length = 567 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 389 bits (1002), Expect = e-127
Identities = 143/239 (59%), Positives = 189/239 (79%), Gaps = 1/239 (0%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE K+V+F YP+RPD IL G L IP G ALVG+SG GKSTV+SL++RFYDP +GE+
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
L+DGV++++ L+W+R +IGLVSQEPVL +I +NI YGK AT EE++ AA+ AN
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
FI +LP G DT VGE G QLSGGQKQR+AIARA++++P+ILLLDEATSALD+ES ++VQE
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 565 ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
ALDR M RTT++++HRLS IRNA++IAV+Q G++VE+GTH EL+ G Y +L++ Q
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQK-GVYAKLVKAQ 238
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 371 bits (955), Expect = e-120
Identities = 141/237 (59%), Positives = 183/237 (77%), Gaps = 16/237 (6%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VSF+YP+RP + + + L LTIPPGKT+ALVG SG GKSTV+SLL+RFYDP+SG I
Sbjct: 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEI 60
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANG 1115
LDGV+I+ L ++WLR Q+G+VSQEPVLF TI NI A+ AN +
Sbjct: 61 LLDGVDIRDLNLRWLRSQIGLVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHD 120
Query: 1116 FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
FI L +GYDTLVGERG QLSGGQKQR+AIARA+++ PKILLLDEATSALD ESE++VQ+
Sbjct: 121 FIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKILLLDEATSALDAESEKLVQE 180
Query: 1176 ALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
ALD+ M RTT+V+AHRLSTI+NA LIAV+ G +VE+G+H+ L++ + G+Y L++
Sbjct: 181 ALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMA-QKGVYAKLVK 236
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 388 bits (999), Expect = e-120
Identities = 197/517 (38%), Positives = 297/517 (57%), Gaps = 24/517 (4%)
Query: 113 LALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDT 172
L++ + V++ + + T R RIR ++LRQD+ FFD+ TGE+ R+S DT
Sbjct: 210 LSIASSVSAGLRGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDT 268
Query: 173 LLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNL 232
+ ++ V ++ +G + LT+ L ++P + +A V K L
Sbjct: 269 QTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLL 328
Query: 233 ASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGL 292
+ + Q A + A V + + +RTV SF E+ +S + + L ++ + + ++ LA
Sbjct: 329 SEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKALAY---- 384
Query: 293 GASVFIIFSAYGLGV-----WYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSA 347
A S G+ + +YG +L+L S G+++S L+ LG+A LS
Sbjct: 385 -AGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSF----LLYQEQLGEAVRVLSY 439
Query: 348 FAAG--QA--AAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQIL 403
+G QA A+ K FE ++RKP I L ++ G IE +DV+FSYP RPD +L
Sbjct: 440 VYSGMMQAVGASEKVFEYLDRKPNIPL--TGTLAPLNLEGLIEFQDVSFSYPNRPDVPVL 497
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463
G + G + ALVG SGSGKSTV +L+Q Y P G+VL+DGV L ++ ++ ++
Sbjct: 498 KGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQV 557
Query: 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523
LV QEPVL S S+R+NIAYG T EEI AAA+AANA FI P G DT VGE G Q
Sbjct: 558 ALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGGQKQR+AIARA+++ PR+L+LDEATSALD+E +++QE R +RT ++++HRLS
Sbjct: 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLS 675
Query: 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
+ A+ I V+++G +VE GTH +L+E+ G Y L+
Sbjct: 676 TVERADQILVLKKGSVVEMGTHKQLMEDQ-GCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 382 bits (982), Expect = e-119
Identities = 190/561 (33%), Positives = 313/561 (55%), Gaps = 27/561 (4%)
Query: 687 PALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTS 746
LLL + + + ++ + +++ +++ L EL+ L+ + L +
Sbjct: 14 KLLLLAILLLLLSALLSLLLPLLIGRIIDALLADLGELL----ELLLLLLLLALLGGVLR 69
Query: 747 PLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVG 806
L Y + G K++ +R FEK++ + + +FD +G + +RL++D V +LV
Sbjct: 70 ALQSYLGSRLGQKIVADLRRDLFEKLLRLPLSFFD--KAKSGDLISRLTNDVEAVSNLVS 127
Query: 807 DTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMY 866
L L+ + + LV+ F W+LAL++L I PLL + + + + S
Sbjct: 128 TVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLLALVLSLLARKSRKLSRRVREAL 187
Query: 867 EEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFF 926
E + +++S IR + +F AE++ +K +++ E +A +R + + L
Sbjct: 188 GELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLLSS 247
Query: 927 MAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFG 986
+ + +G LV T + L I Q + S +A ++A +F
Sbjct: 248 LGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFE 307
Query: 987 LIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVG 1046
L+D+ +++ L++ +G ++F VSF YP V +D+ +I PG+ +A+VG
Sbjct: 308 LLDEEPEVEDPPDP---LKDTIGSIEFENVSFSYP--GKKPVLKDISFSIEPGEKVAIVG 362
Query: 1047 ESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106
SGSGKST+I LL R YDP+SG I +DG++I+ + + LR+++G+VSQ+P+LFS TIR N
Sbjct: 363 PSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDSLRKRIGIVSQDPLLFSGTIREN 422
Query: 1107 I---------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151
I ++ANA+ FI+ L +GYDT+VGERGV LSGGQ+QR+AIARA+++
Sbjct: 423 IALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARALLR 482
Query: 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
P IL+LDEATSALD E+E ++QDAL +++ RTTL++AHRLSTIKNA I V+ G IV
Sbjct: 483 NPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIV 542
Query: 1212 EKGSHESLISTKNGIYTSLIE 1232
E+G+HE L+ K G+Y L +
Sbjct: 543 ERGTHEELL-AKGGLYARLYQ 562
|
Length = 567 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 364 bits (935), Expect = e-112
Identities = 181/514 (35%), Positives = 285/514 (55%), Gaps = 20/514 (3%)
Query: 733 LMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGA 792
+ + L + Y G +++ IR F ++ + +FD+ +G + +
Sbjct: 62 AFLLVVALVLALGTAARFYLVTWLGERVVADIRRAVFAHLISLSPSFFDKN--RSGEVVS 119
Query: 793 RLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQM 852
RL++D L++S++G +LS+ ++N + GL++ F +L LVL PL+ + +
Sbjct: 120 RLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSLVLLAVPLVLLPILLFG 179
Query: 853 KSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912
+ ++ S +++ +A A + + +IRTV +F E+ + E +A ++
Sbjct: 180 RRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIR 239
Query: 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFR-VFFALSMTAIGISQTSSLA 971
+ + F A +VGA V + + + + VF+A+ M A I S +
Sbjct: 240 TRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAV-MVAGSIGTLSEVW 298
Query: 972 SDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRD 1031
+ +A +A + L+ I + + + GE++F +V+F YP RP
Sbjct: 299 GELQRAAGAAERLIELLQAEPDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDG 358
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L LT+ PG+T+ALVG SG+GKST+ LL RFYDP SG I LDGV++++L LR +M +
Sbjct: 359 LNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDPAELRARMAL 418
Query: 1092 VSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERGVQLS 1136
V Q+PVLF+ ++ NI A A+A+ FIS L EGYDT +GERGV LS
Sbjct: 419 VPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
GGQ+QR+AIARAI+K+ ILLLDEATSALD ESE++VQ AL+ +M RTTL++AHRL+T+
Sbjct: 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV 538
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
A I V+ QG IV +G+H LI+ K G+Y L
Sbjct: 539 LKADRIVVMDQGRIVAQGTHAELIA-KGGLYARL 571
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 355 bits (913), Expect = e-109
Identities = 184/572 (32%), Positives = 295/572 (51%), Gaps = 32/572 (5%)
Query: 678 LAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVN-TLNEPKEELMRHSKHWALMFV 736
+Y+ P L+L +A + +L +++ ++ W + V
Sbjct: 6 WSYV-RPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVL-----WWVPLV 59
Query: 737 ALGAASL--LTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARL 794
+G A L + S +S Y + K+++ IR FEK++ + V +FD TG + +R+
Sbjct: 60 VIGLAVLRGICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRI 117
Query: 795 SSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKS 854
+ D+ V S D +LV+ T T + ++ WQL L+V+ + P+L I K
Sbjct: 118 TFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKR 177
Query: 855 MKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914
++ S +N + + VA + + R V F + + + + ++
Sbjct: 178 LRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAG 237
Query: 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDA 974
I ++ +A AV ++ T + A+ + +++ +
Sbjct: 238 SISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPM 297
Query: 975 SKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCL 1034
+ ++A S+F L+D + D+ R +E G+V+F V+F+YP R + L
Sbjct: 298 QRGLAAAESLFTLLDSPPEKDTG---TRAIERARGDVEFRNVTFRYPGR-DRPALDSISL 353
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
I PG+T+ALVG SGSGKST+++L+ RFY+P SG I LDG ++ + LR+Q+ +VSQ
Sbjct: 354 VIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQ 413
Query: 1095 EPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGG 1138
+ VLF+DTI NIA A A F+ L G DT +GE GV LSGG
Sbjct: 414 DVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGG 473
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN 1198
Q+QR+AIARA++K+ IL+LDEATSALD ESER+VQ AL+++M RTTLV+AHRLSTI+
Sbjct: 474 QRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEK 533
Query: 1199 AHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
A I V+ G IVE+G+H L++ +NG+Y L
Sbjct: 534 ADRIVVMDDGRIVERGTHNELLA-RNGLYAQL 564
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 348 bits (894), Expect = e-107
Identities = 186/566 (32%), Positives = 305/566 (53%), Gaps = 15/566 (2%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMD--SIGQNATKTLAIHGVLKVSKKFVYLALGAG 118
+++ +A +A L L+D G++ + + V+ + LA+ G
Sbjct: 15 GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDRSVLWWVPLVV------IGLAVLRG 68
Query: 119 VASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDA 178
+ SF + IR E +L ++FFD++ TG ++ RI+ D+ + A
Sbjct: 69 ICSFVSTYLLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASA 127
Query: 179 IGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQA 238
+ ++ + IG F++ + W LTL ++ +P L I + K + ++ + Q
Sbjct: 128 ATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIVVVMLPVLSILMRRVSKRLRRISKEIQN 187
Query: 239 ADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFI 298
+ TV +T+ R V F G+ + ++ ++ + +++ A + + I
Sbjct: 188 SMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSISSPITQLI 247
Query: 299 IFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKF 358
A + ++ + GD + I ++ L + + G AAA
Sbjct: 248 ASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESL 307
Query: 359 FEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAAL 418
F ++ PE D + ++ RGD+E ++V F YP R D L+ L+I G AL
Sbjct: 308 FTLLDSPPEKD---TGTRAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVAL 363
Query: 419 VGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478
VG SGSGKST+++LI RFY+P +G++L+DG +L ++ L +R ++ LVSQ+ VL + +I
Sbjct: 364 VGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTLASLRRQVALVSQDVVLFNDTIA 423
Query: 479 DNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537
+NIAYG+T A + EI+ A AA A F+ LP GLDT +GE+G+ LSGGQ+QR+AIARA
Sbjct: 424 NNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQRLAIARA 483
Query: 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQG 597
++KD IL+LDEATSALD+ES R+VQ AL+R+M RTT++++HRLS I A+ I V+ G
Sbjct: 484 LLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDG 543
Query: 598 KIVEKGTHSELLENPYGAYNRLIRLQ 623
+IVE+GTH+ELL G Y +L +Q
Sbjct: 544 RIVERGTHNELLARN-GLYAQLHNMQ 568
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 329 bits (847), Expect = e-105
Identities = 129/235 (54%), Positives = 174/235 (74%), Gaps = 2/235 (0%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E K+V F YP +L L IP G ALVG SGSGKST+++LI RFYD +G +
Sbjct: 1 VEFKNVTFRYPGDGPP-VLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
LIDG +++++ L +R +IGLVSQ+ L + ++ +NIAYG+ AT+EE++ AA AANA
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
FI LP+G DT +GE G++LSGGQ+QR+AIARA++KDP IL+LDEATSALD+ES R+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 565 ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
AL+R+M NRTT +++HRLS I NA+ I V++ GKIVE+GTH ELL G Y +L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQG-GVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 344 bits (885), Expect = e-104
Identities = 199/611 (32%), Positives = 314/611 (51%), Gaps = 56/611 (9%)
Query: 645 ASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLG----AIASMTNG 700
AS K QSET L RL L+ + P L+ ++S+
Sbjct: 133 ASEKEAEQGQSETADL--------------LFRLLGLSGRDWPWLISAFVFLTLSSLG-E 177
Query: 701 IIIPIF-GVMLAAMVNTLNEPKEELMRHSKHWALMFVA-LGAASLLTSPLSMYCFAVAGC 758
+ IP + G ++ + P + A+ F+ L AS +++ L F
Sbjct: 178 MFIPFYTGRVIDTLGGDKGPP-------ALASAIFFMCLLSIASSVSAGLRGGSFNYTMA 230
Query: 759 KLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTAT 818
++ RIR F ++ ++G+FDE + TG + +RLSSD + + +++L++N
Sbjct: 231 RINLRIREDLFRSLLRQDLGFFDE--NKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVM 288
Query: 819 AVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVS 878
+ L +L ++ L PL+ + + K + S + +A+QVA +A+S
Sbjct: 289 LLGLLGFMLWLSPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALS 348
Query: 879 SIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVT-FYVGA 937
+RTV SF AEE +K+ E ++ R+ L + G+ + M V Y G
Sbjct: 349 GMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL-AYAGYLWTTSVLGMLIQVLVLYYGG 407
Query: 938 KLVDHKQATFTEVFRVFFALSMTAIG--ISQTSSLASDASKAKSSAASVFGLIDQVSKID 995
+LV + + + V F L +G + S + S +A ++ VF +D+ I
Sbjct: 408 QLVLTGKVSSGNL--VSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKPNIP 465
Query: 996 SSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTV 1055
+ N+ G ++F VSF YP RP + V + L T+ PG+ +ALVG SGSGKSTV
Sbjct: 466 LT--GTLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTV 523
Query: 1056 ISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI-------- 1107
+LLQ Y P+ G + LDGV + + +L +Q+ +V QEPVLFS ++R NI
Sbjct: 524 AALLQNLYQPTGGQVLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTP 583
Query: 1108 -------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
A+ ANA+ FI GYDT VGE+G QLSGGQKQR+AIARA+V++P++L+LDE
Sbjct: 584 DEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSGGQKQRIAIARALVRKPRVLILDE 643
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220
ATSALD E E+++Q++ + RT L++AHRLST++ A I V+ +G +VE G+H+ L+
Sbjct: 644 ATSALDAECEQLLQESRSR--ASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHKQLM 701
Query: 1221 STKNGIYTSLI 1231
G Y L+
Sbjct: 702 -EDQGCYKHLV 711
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 359 bits (923), Expect = e-104
Identities = 316/1214 (26%), Positives = 539/1214 (44%), Gaps = 211/1214 (17%)
Query: 42 NGRIPFHKLLSFADLLDS--VLMLVGTIAATGNGLCVPFVALLFGDLMDS--IGQNATKT 97
+IPF L F L S L+ V + AT +G +PF +FG +M + +G+N
Sbjct: 42 TQKIPF--FLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLGENVNDI 99
Query: 98 LAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDK 157
+ V + + + SF C + + ++ +L+++ QD F D
Sbjct: 100 IF---------SLVLIGIFQFILSFISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDN 150
Query: 158 EINTGEVVGRISGDTLLIQ--DAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSI 215
N G + D L Q IG K + ++F+G ++ + FK LTL +
Sbjct: 151 --NPGSKL-TSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLFKNARLTLCITCVF 207
Query: 216 PPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQ-------ASS 268
P + I GV+ K V ++ +++ + + IRTV S+ GE+ +
Sbjct: 208 PLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEK 267
Query: 269 IYNKCLVKS-YKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILE--------KGY 319
+Y+K ++K+ + S+ G+ G I ++Y G WYG ++I+ +
Sbjct: 268 LYSKYILKANFMESLHIGMINGF--------ILASYAFGFWYGTRIIISDLSNQQPNNDF 319
Query: 320 SGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLD 379
GG V+S++ GVLI L P ++ + A +E INRKP ++ +GKKL
Sbjct: 320 HGGSVISILLGVLISMFMLTIILPNITEYMKSLEATNSLYEIINRKPLVE-NNDDGKKLK 378
Query: 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
DI+ I+ K+V F Y R D +I + G A VG SG GKST++ LI+R YDP
Sbjct: 379 DIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDP 437
Query: 440 QAGEVLI-DGVNLKEFQLKWIREKI----------------------------------- 463
G+++I D NLK+ LKW R KI
Sbjct: 438 TEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYY 497
Query: 464 ---GLVSQEPVLLSSSIRDNIAYG-----KTHATKEEIQAA--------AEAANASH--- 504
G SQE +S R A T + E I+ +E + S
Sbjct: 498 NEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVL 557
Query: 505 ---FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
F+ LP +T VG + +LSGGQKQR++IARA+I++P+IL+LDEATS+LD++S +
Sbjct: 558 IHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYL 617
Query: 562 VQEALDRVM--INRTTVIVSHRLSLIRNANIIAVI------------------------- 594
VQ+ ++ + NR T+I++HRLS IR AN I V+
Sbjct: 618 VQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTKDNKEN 677
Query: 595 -----QQGK-----------------IVEKGTHSELLENPYGAYNRLIRLQETCKESEKS 632
+ I+E+GTH L++N G Y +I Q+ + +
Sbjct: 678 NNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSN 737
Query: 633 AVNNSDSDNQPFA-------------------SPKITTPKQSETESDFPASEKAKMPPDV 673
N+ DSD + A + + K+S SD ASE +
Sbjct: 738 NDNDKDSDMKSSAYKDSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNA-GGKL 796
Query: 674 SLSRLAYLNSPEVPALL---------------LGAIASMTNGIIIPIFGVMLAAMVNTLN 718
R + P+ P L + A++ + G + P+F ++ A V+TL
Sbjct: 797 PFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIALSILVAGGLYPVFALLYAKYVSTLF 856
Query: 719 EPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVG 778
+ L +S ++L + + A ++ L Y V G K+ K ++ FE ++Y E+
Sbjct: 857 D-FANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEIS 915
Query: 779 WFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA---- 834
+FD+ H+ G + A ++ D L+++ + + + + +V +V++F C +A
Sbjct: 916 FFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLT 975
Query: 835 ------LLVLAIFPLLGITGHIQMKSMK----GFSANAEN-MYEEASQVASDAVSSIRTV 883
+ V AI L ++ K + F+ N+++ ++++ S + +A ++ TV
Sbjct: 976 GTYFIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTV 1035
Query: 884 ASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGI--GFGLSFFFFFMAYAVTFYVGAKLVD 941
+ E+ L +K + K R+ L++ + GF S F ++A ++ G+ L+
Sbjct: 1036 IIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFA--YWFGSFLIR 1093
Query: 942 HKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTG 1001
+ + F T + SL D+ AK S + LI + S ID + G
Sbjct: 1094 RGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGG 1153
Query: 1002 RTLEN---VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISL 1058
++N + G+++ + V+F+Y +RP++ +++DL + KT A+VGE+GSGKSTV+SL
Sbjct: 1154 IRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSL 1213
Query: 1059 LQRFYDPSSGHITL 1072
L RFYD + H +
Sbjct: 1214 LMRFYDLKNDHHIV 1227
|
Length = 1466 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 318 bits (816), Expect = e-100
Identities = 125/235 (53%), Positives = 170/235 (72%), Gaps = 17/235 (7%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
V+F V+F+YP V RD+ L IP G+T+ALVG SGSGKST+++L+ RFYD SG I
Sbjct: 1 VEFKNVTFRYPGDG-PPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANG 1115
+DG +++ + LR+Q+G+VSQ+ LF+DT+ NI A ANA+
Sbjct: 60 LIDGHDVRDYTLASLRRQIGLVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHE 119
Query: 1116 FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
FI L EGYDT++GERGV+LSGGQ+QR+AIARA++K+P IL+LDEATSALD ESER+VQ
Sbjct: 120 FIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTESERLVQA 179
Query: 1176 ALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
AL+++M +RTT V+AHRLSTI+NA I V+ G IVE+G+HE L++ + G+Y L
Sbjct: 180 ALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLA-QGGVYAKL 233
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 335 bits (862), Expect = e-100
Identities = 177/533 (33%), Positives = 279/533 (52%), Gaps = 36/533 (6%)
Query: 111 VYLALGAGVASFFQVAC-----WMI--TGERQAARIRSFYLETILRQDIAFFDKEINTGE 163
LA+G +A+ F+ ++I G+R + + +LR +++F+K + GE
Sbjct: 194 TVLAIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGE 252
Query: 164 VVGRISGDTLLIQDAI-GEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAG 222
++ R+ + I++ + G + I + I ++ + W LTL +L++IP V+
Sbjct: 253 IISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY-SWKLTLIVLAAIPLNVLIT 310
Query: 223 VVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282
++ L+ + + + + +TI I TV + E + S ++ L K
Sbjct: 311 LIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370
Query: 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQ-- 340
+ + + + L +W+GA L+LE + G L+ L
Sbjct: 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELT--------LGQLVAFNMLAGYF 422
Query: 341 ASPCLS------AFAAGQAAAFKFFEAINRKPEIDLCCVNGKK---LDDIRGDIELKDVN 391
SP F + A + + ++ PE + K L ++G+IE ++V+
Sbjct: 423 ISPITRLSQLWTDFQQAKVALERLGDILDTPPEQE----GDKTLIHLPKLQGEIEFENVS 478
Query: 392 FSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL 451
F Y +L L IP G A+VG SGSGKST++ L+ Y PQ G +L+DGV+L
Sbjct: 479 FRYGPDDPP-VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDL 537
Query: 452 KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQ 511
+ L +R ++G V Q+P L S SIR+NIA G AT EEI AA+ A A FI+NLP
Sbjct: 538 NDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPM 597
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI 571
G DT VGE G LSGGQ+QR+A+ARA++ P+ILLLDEATSALD E+ ++ + L +++
Sbjct: 598 GYDTPVGEGGANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQ 657
Query: 572 NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624
RT +I++HRLS IR+A+ I V+ QGKIVE+G+H ELL G Y RL + QE
Sbjct: 658 GRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEELL-AQGGLYARLYQQQE 709
|
Length = 709 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 314 bits (807), Expect = 2e-94
Identities = 192/576 (33%), Positives = 307/576 (53%), Gaps = 47/576 (8%)
Query: 73 GLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKF--------VYLALGAGVASFFQ 124
GL V VAL+ D+ + K L G K + + L + G+ SF
Sbjct: 26 GLIVAGVALILNAASDTFMLSLLKPLLDDGFGKADRSVLKWMPLVVIGLMILRGITSFIS 85
Query: 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVG 184
C + +R ++ ++FFDK+ +TG ++ RI+ D+ + + +
Sbjct: 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALI 144
Query: 185 KFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVG----NLASQKQAAD 240
++ GAS IG F++ F+ W L+L +L I P+V + I++V N++ Q
Sbjct: 145 TVVREGASIIGLFIMMFYYSWQLSL-ILIVIAPIV---SIAIRVVSKRFRNISKNMQNTM 200
Query: 241 SLAATVVAQTIGSIRTVASFTG----EQQASSIYNKCLVKSYKSSVQEGLATGL-GLGAS 295
T Q + + V F G ++ + N+ + K ++ + L AS
Sbjct: 201 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSISDPIIQLIAS 260
Query: 296 VFIIFSAYGLGVWYGAKL--ILEKGYSGGDVMSVIFGVLIGSM----SLGQASPCLSAFA 349
+ + F V Y A +++ +G ++V+F +I M SL + + F
Sbjct: 261 LALAF------VLYAASFPSVMDTLTAG--TITVVFSSMIALMRPLKSLTNVN---AQFQ 309
Query: 350 AGQAAAFKFFEAINRKPEIDLCCVNGK-KLDDIRGDIELKDVNFSYPARPDEQILNGFCL 408
G AA F ++ + E D GK ++ +GDIE ++V F+YP + + L
Sbjct: 310 RGMAACQTLFAILDLEQEKD----EGKRVIERAKGDIEFRNVTFTYPGK-EVPALRNINF 364
Query: 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQ 468
IP G ALVG SGSGKST+ +L+ RFYD GE+L+DG +L+++ L +R ++ LVSQ
Sbjct: 365 KIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTLASLRNQVALVSQ 424
Query: 469 EPVLLSSSIRDNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527
L + +I +NIAY +T ++E+I+ AA A A FI + GLDT +GE+G+ LSGG
Sbjct: 425 NVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGG 484
Query: 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN 587
Q+QR+AIARA+++D IL+LDEATSALD+ES R +Q ALD + NRT+++++HRLS I
Sbjct: 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEK 544
Query: 588 ANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
A+ I V++ G+IVE+GTH+ELL G Y +L ++Q
Sbjct: 545 ADEILVVEDGEIVERGTHAELLAQN-GVYAQLHKMQ 579
|
Length = 582 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 313 bits (805), Expect = 4e-94
Identities = 185/532 (34%), Positives = 286/532 (53%), Gaps = 57/532 (10%)
Query: 732 ALMFVALGAASLLTSPLSMYCFA-VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAI 790
L+ + L +TS +S YC + V+G K++ +R F ++ M V +FD+ STG +
Sbjct: 68 PLVVIGLMILRGITSFISSYCISWVSG-KVVMTMRRRLFGHMMGMPVSFFDK--QSTGTL 124
Query: 791 GARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850
+R++ D+ V S L +V+ A+ + ++ F WQL+L+++ I P++ I +
Sbjct: 125 LSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLILIVIAPIVSIAIRV 184
Query: 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQ 910
K + S N +N + + A + + V F +E K + K + +RQ
Sbjct: 185 VSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDK-----VSNRMRQ 239
Query: 911 GLM-----SGIGFGL-----SFFFFFMAYAVTFYVGAKLVDHKQA-TFTEVFRVFFAL-- 957
M S I + S F+ YA +F ++D A T T VF AL
Sbjct: 240 QGMKMVSASSISDPIIQLIASLALAFVLYAASF---PSVMDTLTAGTITVVFSSMIALMR 296
Query: 958 ---SMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFL 1014
S+T ++ + + ++ ++F ++D + D + +E G+++F
Sbjct: 297 PLKSLT--------NVNAQFQRGMAACQTLFAILDLEQEKDEGKRV---IERAKGDIEFR 345
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
V+F YP + R++ IP GKT+ALVG SGSGKST+ +LL RFYD G I LDG
Sbjct: 346 NVTFTYPGKEV-PALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDG 404
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----------------AEMANANGFIS 1118
+++ + LR Q+ +VSQ LF+DTI NI A MA A FI+
Sbjct: 405 HDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFIN 464
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
+ G DT++GE GV LSGGQ+QR+AIARA++++ IL+LDEATSALD ESER +Q ALD
Sbjct: 465 KMDNGLDTVIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALD 524
Query: 1179 QVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
++ +RT+LV+AHRLSTI+ A I VV G IVE+G+H L++ +NG+Y L
Sbjct: 525 ELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELLA-QNGVYAQL 575
|
Length = 582 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 298 bits (766), Expect = 2e-93
Identities = 110/228 (48%), Positives = 165/228 (72%), Gaps = 2/228 (0%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
G+IE ++VNFSY + +L I G A+VG +G+GK+T+I+L+ RFYDPQ G
Sbjct: 1 GEIEFENVNFSY--DEKKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKG 58
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
++LIDG+++++ K +R IG+V Q+ L S +I +NI G+ +AT EE+ AA+ A A
Sbjct: 59 QILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGA 118
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
FI LP G DT +GE+G LS G++Q +AIARAM++DP+IL+LDEATS +D+E+ +++
Sbjct: 119 HDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKLI 178
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
QEAL+++M RT++I++HRLS I+NA+ I V+ GKI+E+GTH ELL
Sbjct: 179 QEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA 226
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 294 bits (754), Expect = 2e-91
Identities = 118/239 (49%), Positives = 159/239 (66%), Gaps = 3/239 (1%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE ++V F+Y P +L IP G A+VG SGSGKST++ L+ RFYD +G +
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
LIDG +++E L +R IG+V Q+ VL + +I NI YG+ AT EE+ AA+AA
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
I P G DT VGE G++LSGG+KQRVAIARA++K+P ILLLDEATSALD+ + R +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 565 ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
AL V RTT++++HRLS I NA+ I V++ G+IVE+GTH ELL G Y + + Q
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELL-AKGGLYAEMWKAQ 236
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 309 bits (795), Expect = 3e-91
Identities = 173/521 (33%), Positives = 273/521 (52%), Gaps = 29/521 (5%)
Query: 732 ALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIG 791
A+ + L L Y A G +L + F ++ + + +F S G I
Sbjct: 197 AIGLLLAALFEALLRLLRTYLIAHLGKRLDLELSGRFFRHLLRLPLSYF--EKRSVGEII 254
Query: 792 ARLSSDAALVRSLV-GDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850
+R+ + +R + G L+L++ + A++ L + F W+L L+VLA PL + I
Sbjct: 255 SRVR-ELEQIREFLTGSILTLII-DLLFALIFLAVMFLYSWKLTLIVLAAIPLNVLITLI 312
Query: 851 QMKSMKGFSANAENMYEEASQ--VASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGI 908
++ + + E A Q + + I TV + AE + + + + G
Sbjct: 313 FQPLLR--RKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGF 370
Query: 909 RQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIG-ISQT 967
+ ++ I + ++ + + GA LV + T ++ F L+ I I++
Sbjct: 371 KTEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLV-AFNMLAGYFISPITRL 429
Query: 968 SSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIE 1027
S L +D +AK + + ++D + + T L + GE++F VSF+Y
Sbjct: 430 SQLWTDFQQAKVALERLGDILDTPPE-QEGDKTLIHLPKLQGEIEFENVSFRYGPDD-PP 487
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V DL L IPPG+ +A+VG SGSGKST++ LL Y P G I LDGV++ + + LR+
Sbjct: 488 VLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDLASLRR 547
Query: 1088 QMGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERG 1132
Q+G V Q+P LFS +IR NI A++A A+ FI L GYDT VGE G
Sbjct: 548 QVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGG 607
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192
LSGGQ+QR+A+ARA++ +PKILLLDEATSALD E+E ++ L Q++ RT +++AHR
Sbjct: 608 ANLSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHR 667
Query: 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233
LSTI++A I V+ QG IVE+GSHE L++ + G+Y L +
Sbjct: 668 LSTIRSADRIIVLDQGKIVEQGSHEELLA-QGGLYARLYQQ 707
|
Length = 709 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 287 bits (737), Expect = 3e-89
Identities = 121/235 (51%), Positives = 159/235 (67%), Gaps = 18/235 (7%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F V+F Y P V +D+ TIP GK +A+VG SGSGKST++ LL RFYD SSG I
Sbjct: 1 IEFENVTFAYD--PGRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSI 58
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANG 1115
+DG +I+++ + LR+ +GVV Q+ VLF+DTI NI A+ A +
Sbjct: 59 LIDGQDIREVTLDSLRRAIGVVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHD 118
Query: 1116 FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
I +GYDT+VGERG++LSGG+KQRVAIARAI+K P ILLLDEATSALD +ER +Q
Sbjct: 119 KIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPILLLDEATSALDTHTEREIQA 178
Query: 1176 ALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
AL V RTT+V+AHRLSTI NA I V+ G IVE+G+HE L++ K G+Y +
Sbjct: 179 ALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLA-KGGLYAEM 232
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 291 bits (746), Expect = 6e-86
Identities = 164/489 (33%), Positives = 250/489 (51%), Gaps = 45/489 (9%)
Query: 769 FEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAV---VGLVI 825
FE+++ + + W HS G L + +L G L + ++ AT V V L +
Sbjct: 96 FERIIQLPLAW-----HSQRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPL 150
Query: 826 AFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVAS 885
A W+L+L+++ + + + + M+ K A E Y + SDA+ ++ V S
Sbjct: 151 ALFMNWRLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQS 210
Query: 886 FC---AEEKVMKLYKKKCEGPIKAGIR----QGLMSGIGFGLSFFFFFMAYAVTFYVGAK 938
+ AE + ++ + A + L S + S +GA
Sbjct: 211 YNRIEAETQALRDIADNL---LAAQMPVLSWWALASVLNRAASTI----TMLAILVLGAA 263
Query: 939 LVDHKQATFTEVFRVFFALSMTAIG-ISQTSSLASDASKAKSSAASVFGLIDQVSKIDSS 997
LV Q EV F + IG + Q + + A F + D V +
Sbjct: 264 LVQKGQLRVGEVV-AFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDVRDP 322
Query: 998 EYTGRTLENVMGEVQFLRVSFKYP-TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056
L V G V+F VSF Y +R +E D+ PG+T+A+VG +G+GKST+I
Sbjct: 323 P-GAIDLGRVKGAVEFDDVSFSYDNSRQGVE---DVSFEAKPGQTVAIVGPTGAGKSTLI 378
Query: 1057 SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------- 1107
+LLQR +DP SG I +DG +I+ + LR+ + VV Q+ LF+ +I NI
Sbjct: 379 NLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATD 438
Query: 1108 ------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161
AE A A+ FI +GYDT+VGERG QLSGG++QR+AIARA++K+P IL+LDEA
Sbjct: 439 EEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPPILILDEA 498
Query: 1162 TSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221
TSALD+E+E V+ ALD++M RTT ++AHRLST++NA I V G +VE GS + L++
Sbjct: 499 TSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDELVA 558
Query: 1222 TKNGIYTSL 1230
+ G + +L
Sbjct: 559 -RGGRFAAL 566
|
Length = 588 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 270 bits (692), Expect = 4e-83
Identities = 108/233 (46%), Positives = 162/233 (69%), Gaps = 20/233 (8%)
Query: 1009 GEVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
GE++F V+F Y +P V +D+ +I PG+T+A+VG +G+GK+T+I+LL RFYDP
Sbjct: 1 GEIEFENVNFSYDEKKP---VLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQK 57
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMAN 1112
G I +DG++I+ + K LR +GVV Q+ LFS TI NI A+ A
Sbjct: 58 GQILIDGIDIRDISRKSLRSMIGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAG 117
Query: 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
A+ FI L GYDT++GE G LS G++Q +AIARA++++PKIL+LDEATS +D E+E++
Sbjct: 118 AHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDTETEKL 177
Query: 1173 VQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNG 1225
+Q+AL+++M RT++++AHRLSTIKNA I V+ G I+E+G+H+ L++ K G
Sbjct: 178 IQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLA-KKG 229
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 277 bits (712), Expect = 4e-81
Identities = 164/440 (37%), Positives = 232/440 (52%), Gaps = 34/440 (7%)
Query: 199 IAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAA-----DSLAATVVAQTIGS 253
+A F W L+L ++ L I ++ LV QAA L A V + IG+
Sbjct: 150 LALFMNWRLSLVLVV----LGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHV-SDAIGN 204
Query: 254 IRTVASFT---GEQQA-SSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWY 309
+ V S+ E QA I + L LA+ L AS + + LG
Sbjct: 205 VSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWWALASVLNRAASTITMLAILVLGAAL 264
Query: 310 GAKLILEKGYSGGDVMSVI-FG-VLIGSMSLGQASPCLSAFAAG---QAAAFK-FFEAIN 363
K L G+V++ + F +LIG L Q + AF A + FFE +
Sbjct: 265 VQKGQL----RVGEVVAFVGFATLLIGR--LDQ----VVAFINQVFMAAPKLEEFFEVED 314
Query: 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSG 423
P++ L ++G +E DV+FSY Q + G A+VG +G
Sbjct: 315 AVPDVRDP-PGAIDLGRVKGAVEFDDVSFSYDNSR--QGVEDVSFEAKPGQTVAIVGPTG 371
Query: 424 SGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAY 483
+GKST+I+L+QR +DPQ+G +LIDG +++ +R I +V Q+ L + SI DNI
Sbjct: 372 AGKSTLINLLQRVFDPQSGRILIDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRV 431
Query: 484 GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543
G+ AT EE++AAAE A A FI+ P G DT VGE G QLSGG++QR+AIARA++KDP
Sbjct: 432 GRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGERQRLAIARALLKDPP 491
Query: 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603
IL+LDEATSALD E+ V+ ALD +M RTT I++HRLS +RNA+ I V G++VE G
Sbjct: 492 ILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESG 551
Query: 604 THSELLENPYGAYNRLIRLQ 623
+ EL+ G + L+R Q
Sbjct: 552 SFDELVARG-GRFAALLRAQ 570
|
Length = 588 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 262 bits (672), Expect = 2e-80
Identities = 108/221 (48%), Positives = 156/221 (70%)
Query: 379 DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438
D ++G ++ ++V F+YP RPD +L + G + ALVG SGSGKSTV++L++ FY
Sbjct: 6 DHLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQ 65
Query: 439 PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
PQ G+VL+DG + +++ K++ K+ LV QEPVL + S++DNIAYG + E ++ AA+
Sbjct: 66 PQGGQVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQ 125
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A+A FI L G DT VGE G QLSGGQKQRVAIARA+I++P++L+LDEATSALD+ES
Sbjct: 126 KAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAES 185
Query: 559 GRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKI 599
+ VQ+AL RT ++++HRLS + A+ I V+ G+I
Sbjct: 186 EQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 253 bits (648), Expect = 9e-78
Identities = 92/198 (46%), Positives = 129/198 (65%), Gaps = 28/198 (14%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VSF YP RP V +D+ LTI PG+ +A+VG SGSGKST++ LL R YDP+SG I
Sbjct: 1 IEFKNVSFSYPGRPK-PVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
+DGV+++ L ++ LR+ + V Q+P LFS TIR NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190
LSGGQ+QR+AIARA++++P IL+LDEATSALD E+E ++ +AL + +T +V+A
Sbjct: 97 ----LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIA 152
Query: 1191 HRLSTIKNAHLIAVVSQG 1208
HRLSTI++A I V+ G
Sbjct: 153 HRLSTIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 253 bits (647), Expect = 6e-77
Identities = 111/217 (51%), Positives = 146/217 (67%), Gaps = 15/217 (6%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
G V+F V+F YPTRP V +D+ T+ PG+ ALVG SGSGKSTV++LL+ FY P G
Sbjct: 10 GIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGG 69
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ LDG I + + K+L ++ +V QEPVLF+ +++ NI A+ A+A
Sbjct: 70 QVLLDGKPISQYEHKYLHSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHA 129
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ FIS L GYDT VGE+G QLSGGQKQRVAIARA+++ P++L+LDEATSALD ESE+ V
Sbjct: 130 HSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSALDAESEQQV 189
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMI 1210
Q AL RT LV+AHRLST++ A I V+ G I
Sbjct: 190 QQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 267 bits (685), Expect = 2e-76
Identities = 153/455 (33%), Positives = 232/455 (50%), Gaps = 47/455 (10%)
Query: 189 FGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVA 248
F F+ + FF LT ++ S+ + V + ++ K + A + +
Sbjct: 265 FVVVFLA---VMFFYSPTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLV 321
Query: 249 QTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVW 308
+++ I T+ + E Q + +++ L +S + + A I + + +W
Sbjct: 322 ESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLGNIAGQAIELIQKLTFAILLW 381
Query: 309 YGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFA--AGQ--------AAAFKF 358
+GA L V+ G++S GQ L AF AG+ A ++
Sbjct: 382 FGAHL-----------------VIGGALSPGQ----LVAFNMLAGRVTQPVLRLAQLWQD 420
Query: 359 FE----AINRKPEI-DLCCVNGKK----LDDIRGDIELKDVNFSYPARPDE-QILNGFCL 408
F+ A+ R +I + L ++RG I +++ F Y PD ++L+ L
Sbjct: 421 FQQTGIALERLGDILNSPTEPRSAGLAALPELRGAITFENIRFRY--APDSPEVLSNLNL 478
Query: 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQ 468
I G +VG SGSGKST+ L+QR Y PQ G+VL+DGV+L W+R ++G+V Q
Sbjct: 479 DIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADPAWLRRQMGVVLQ 538
Query: 469 EPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528
E VL S SIRDNIA A E + AA+ A A FI LPQG +T VGE G LSGGQ
Sbjct: 539 ENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598
Query: 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNA 588
+QR+AIARA++ +PRIL+ DEATSALD ES ++ + + RT +I++HRLS +R
Sbjct: 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRAC 658
Query: 589 NIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ I V+++G+I E G H ELL G Y RL + Q
Sbjct: 659 DRIIVLEKGQIAESGRHEELLALQ-GLYARLWQQQ 692
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 248 bits (636), Expect = 2e-75
Identities = 116/240 (48%), Positives = 155/240 (64%), Gaps = 4/240 (1%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I + V F Y +PD IL+ L I G + +VG SGSGKST+ LIQRFY P+ G
Sbjct: 1 ITFEHVRFRY--KPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
VL+DG +L W+R ++G+V QE VL + SIRDNIA + E + AA+ A A
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
FI LP+G DT VGE G LSGGQ+QR+AIARA+I +PRIL+ DEATSALD ES +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ + RT +I++HRLS ++NA+ I V+++G+IVE+G+H ELL G Y L +LQ
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAEN-GLYAYLYQLQ 237
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 4e-74
Identities = 111/236 (47%), Positives = 156/236 (66%), Gaps = 19/236 (8%)
Query: 1011 VQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
+ F V F+Y P P + ++ L I PG+ + +VG SGSGKST+ L+QRFY P +G
Sbjct: 1 ITFEHVRFRYKPDGP--VILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGR 58
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANAN 1114
+ +DG ++ WLR+Q+GVV QE VLF+ +IR NI A++A A+
Sbjct: 59 VLVDGHDLALADPAWLRRQVGVVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAH 118
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
FIS L EGYDT+VGE+G LSGGQ+QR+AIARA++ P+IL+ DEATSALD ESE +
Sbjct: 119 DFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIFDEATSALDYESEHAIM 178
Query: 1175 DALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
+ + RT +++AHRLST+KNA I V+ +G IVE+GSH+ L++ +NG+Y L
Sbjct: 179 RNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLA-ENGLYAYL 233
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 250 bits (641), Expect = 1e-72
Identities = 166/456 (36%), Positives = 237/456 (51%), Gaps = 41/456 (8%)
Query: 800 LVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFS 859
++R ++ + L LV+ + AV+ + W AL L L + I F
Sbjct: 55 ILRWILFNILPTLVEISLVAVI---LWRVYGWWFALTTLVTVILYLLFTVIVSDWRTDFR 111
Query: 860 ANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFG 919
N +A+ A D++ + TV F EE Y E KA I+ +
Sbjct: 112 RLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK------VHVS 165
Query: 920 LSFFFFF------MAYAVTFYVGAKLVDHKQATFTEVFRV---FFALSMTAIGISQTSSL 970
L F V + A V+ Q T ++ V F LS+ +
Sbjct: 166 LLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLG---FS 222
Query: 971 ASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKY-PTRPHIEVF 1029
+ +A + +F L+D +++ + +G V F+ VSF Y P RP +
Sbjct: 223 YREIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRPIL--- 279
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+ TIP GKT+A+VGESG+GKST++ LL RFYD +SG IT+DG +I+ + + LR+ +
Sbjct: 280 NGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAI 339
Query: 1090 GVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERGVQ 1134
G+V Q+ VLF+DTI NI AE A + FI L EGYDT VGERG++
Sbjct: 340 GIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGG+KQRVAIAR I+K P IL+LDEATSALD +E+ +Q AL +V RTTLV+AHRLS
Sbjct: 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLS 459
Query: 1195 TIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
TI +A I V+ G IVE+G+HE L++ G+Y +
Sbjct: 460 TIIDADEIIVLDNGRIVERGTHEELLA-AGGLYAEM 494
|
Length = 497 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 249 bits (639), Expect = 3e-72
Identities = 146/394 (37%), Positives = 223/394 (56%), Gaps = 29/394 (7%)
Query: 239 ADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATG-LGLGASVF 297
ADS A ++ + TV F E+ + Y+ L K++++ ++ L G +
Sbjct: 117 ADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIKVHVSLLVLNFGQTA- 175
Query: 298 IIFSAYGLGVWYGAKLILEKGYSG-GDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAF 356
IFS + + L +E+G GD+ V + ++ + P L+ +
Sbjct: 176 -IFSTGLRVMMTMSALGVEEGQLTVGDL------VNVNALLFQLSIP-LNFLGF---SYR 224
Query: 357 KFFEAINRKPEI-DLCCVNGKKLDDIR---------GDIELKDVNFSY-PARPDEQILNG 405
+ +A+ ++ DL V + D G + +V+F+Y P RP ILNG
Sbjct: 225 EIRQALTDMEKMFDLLDVEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPRRP---ILNG 281
Query: 406 FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465
IP G A+VG SG+GKST++ L+ RFYD +G + IDG ++++ + +R IG+
Sbjct: 282 ISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVTQQSLRRAIGI 341
Query: 466 VSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525
V Q+ VL + +I NI YG+ AT EE+ AAAEAA FI++LP+G DT VGE G++LS
Sbjct: 342 VPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLS 401
Query: 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585
GG+KQRVAIAR ++K+P IL+LDEATSALD+ + + +Q AL V RTT++++HRLS I
Sbjct: 402 GGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTI 461
Query: 586 RNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
+A+ I V+ G+IVE+GTH ELL G Y +
Sbjct: 462 IDADEIIVLDNGRIVERGTHEELLAAG-GLYAEM 494
|
Length = 497 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 237 bits (607), Expect = 4e-72
Identities = 89/214 (41%), Positives = 127/214 (59%), Gaps = 43/214 (20%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE K+V+FSYP RP + +L L I G A+VG SGSGKST++ L+ R YDP +GE+
Sbjct: 1 IEFKNVSFSYPGRP-KPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
LIDGV+L++ L+ +R+ I V Q+P L S +IR+NI
Sbjct: 60 LIDGVDLRDLDLESLRKNIAYVPQDPFLFSGTIRENI----------------------- 96
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
LSGGQ+QR+AIARA+++DP IL+LDEATSALD E+ ++ E
Sbjct: 97 -------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEALILE 137
Query: 565 ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598
AL + +T ++++HRLS IR+A+ I V+ G+
Sbjct: 138 ALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 253 bits (649), Expect = 1e-71
Identities = 157/527 (29%), Positives = 257/527 (48%), Gaps = 48/527 (9%)
Query: 732 ALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIG 791
AL +A+ L Y FA ++ + + + ++ + +G+F+ G
Sbjct: 182 ALAMLAVAIFEPALGGLRTYLFAHLTSRIDVELGARLYRHLLGLPLGYFES--RRVGDTV 239
Query: 792 ARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPL-----LGI 846
AR+ + L G L++++ VV L + F L +V+ + +
Sbjct: 240 ARVRELEQIRNFLTGSALTVVLDLLFV-VVFLAVMFFYSPTLTGVVIGSLVCYALLSVFV 298
Query: 847 TGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKA 906
++ + F +A + ++V+ I T+ + E + + ++ + A
Sbjct: 299 GPILRKRVEDKFERSAAA-----TSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAA 353
Query: 907 GIR---QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIG 963
R G ++G L + +A+ + GA LV + ++ A +M A
Sbjct: 354 SFRVTNLGNIAGQAIEL---IQKLTFAILLWFGAHLVIGGALSPGQLV----AFNMLAGR 406
Query: 964 ISQT----SSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFK 1019
++Q + L D + + + +++ S + L + G + F + F+
Sbjct: 407 VTQPVLRLAQLWQDFQQTGIALERLGDILN--SPTEPRSAGLAALPELRGAITFENIRFR 464
Query: 1020 Y-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078
Y P P EV +L L I PG+ I +VG SGSGKST+ LLQR Y P G + +DGV++
Sbjct: 465 YAPDSP--EVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLA 522
Query: 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEG 1123
WLR+QMGVV QE VLFS +IR NI A++A A+ FIS L +G
Sbjct: 523 IADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQG 582
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
Y+T VGE+G LSGGQ+QR+AIARA+V P+IL+ DEATSALD ESE ++ + ++
Sbjct: 583 YNTEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRG 642
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
RT +++AHRLST++ I V+ +G I E G HE L++ + G+Y L
Sbjct: 643 RTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEELLALQ-GLYARL 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 245 bits (627), Expect = 8e-70
Identities = 154/482 (31%), Positives = 251/482 (52%), Gaps = 29/482 (6%)
Query: 769 FEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVI--- 825
F +++ M + W H L + +L G L + Q+ AT V ++
Sbjct: 96 FGRIISMPLSW-----HQQRGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPT 150
Query: 826 AFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVAS 885
AF W+L+++++ + L + + M+ K A E+ Y + SD++S++ V S
Sbjct: 151 AFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHS 210
Query: 886 FCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQA 945
+ E K+ + A + GL+ ++ +G LV +
Sbjct: 211 YNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCILVIGTVLVIKGEL 270
Query: 946 TFTEVFRVFFALSMTAIG-ISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTL 1004
+ EV F + IG + Q S + +A++ F L D V + + L
Sbjct: 271 SVGEVI-AFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQREEPA-DAPEL 328
Query: 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064
NV G V+F ++F++ + D+ G+T+A+VG +G+GK+T+I+LLQR YD
Sbjct: 329 PNVKGAVEFRHITFEFANSS--QGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYD 386
Query: 1065 PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AE 1109
P+ G I +DG++I + + LR+ + V Q+ LF+ +IR NI A+
Sbjct: 387 PTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAK 446
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
A A+ FI GYDTLVGERG +LSGG++QR+AIARAI+K IL+LDEATSALD+E+
Sbjct: 447 AAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARAILKNAPILVLDEATSALDVET 506
Query: 1170 ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
E V++A+D + +RTT ++AHRLST++NA L+ + QG ++EKGS + LI K+G +
Sbjct: 507 EARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQELIQ-KDGRFYK 565
Query: 1230 LI 1231
L+
Sbjct: 566 LL 567
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 1e-68
Identities = 92/221 (41%), Positives = 134/221 (60%), Gaps = 1/221 (0%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
G IE ++V+FSYP + + N L I G A++G GSGKST++ L+ Y P +G
Sbjct: 1 GRIEFRNVSFSYPNQEIPALDNV-SLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
VL+DG ++++ +R IG V Q+ L ++RDNI G A E I AAE A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
+ F+ P GLD +GE G LSGGQ+Q VA+ARA++ DP ILLLDE TSA+D S +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 563 QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603
+E L +++ ++T +I++HR SL+ + I V+ G+IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 229 bits (586), Expect = 2e-64
Identities = 106/280 (37%), Positives = 165/280 (58%), Gaps = 12/280 (4%)
Query: 349 AAGQAAA---FKFFEAINRKPEIDLCCVNGKKLDDIRGD-IELKDVNFSYPARPDEQILN 404
AAG+AAA F E+ P +G+K + IE+ N S+ + L+
Sbjct: 285 AAGEAAADKLFTLLESPVATPG------SGEKAEVANEPPIEISLENLSFRYPDGKPALS 338
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
L I G + ALVG SG+GKST+++L+ F P GE+ ++G++L++ + R++I
Sbjct: 339 DLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398
Query: 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524
VSQ P L + +IR+NI + A+ EEI AA + A F+ P GLDT +GE G L
Sbjct: 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFV-PKPDGLDTVIGEGGAGL 457
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584
SGGQ QR+A+ARA++ +LLLDE T+ LD+E+ +++ +AL + +T ++++HRL
Sbjct: 458 SGGQAQRLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLED 517
Query: 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624
+A+ I V+ G++VE+GTH EL E G Y L++ QE
Sbjct: 518 AADADRIVVLDNGRLVEQGTHEELSEKQ-GLYANLLKQQE 556
|
Length = 559 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 217 bits (555), Expect = 2e-64
Identities = 84/222 (37%), Positives = 138/222 (62%), Gaps = 17/222 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
G+++F VS +Y RP++ V +++ +I PG+ + +VG +GSGKS+++ L R + SS
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANA 1113
G I +DGV+I K+ + LR ++ ++ Q+PVLFS TIR+N+ E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGL 118
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
F+ L G DT+V E G LS GQ+Q + +ARA++++ KIL+LDEAT+++D E++ ++
Sbjct: 119 KEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALI 178
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
Q + + D T L +AHRL TI ++ I V+ +G +VE S
Sbjct: 179 QKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 229 bits (587), Expect = 2e-63
Identities = 98/233 (42%), Positives = 146/233 (62%), Gaps = 5/233 (2%)
Query: 380 DIRGDIELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437
++G+IE ++V+F+YP ++ L+ L I G A++G GSGKST++ L+ Y
Sbjct: 459 RLQGEIEFRNVSFAYP---GQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLY 515
Query: 438 DPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
P G VL+DGV++++ +R IG V Q+P L ++RDNIA G +A EEI AA
Sbjct: 516 QPTEGSVLLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAA 575
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E A + F++ P GLD +GE G LSGGQ+Q VA+ARA+++DP ILLLDE TSA+D+
Sbjct: 576 ELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNR 635
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
S ++ L R + +T V+V+HR SL+ + I V+ G+IV G ++LE
Sbjct: 636 SEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQVLE 688
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 227 bits (580), Expect = 1e-62
Identities = 150/509 (29%), Positives = 250/509 (49%), Gaps = 39/509 (7%)
Query: 731 WAL---MFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADH-S 786
W L + +A+ +L + L Y VAG K + + FE+V+ + + EA S
Sbjct: 187 WVLAIGVALAIVFDFVLKT-LRSYFLDVAGKKADLILSAKLFERVLGLRM----EARPAS 241
Query: 787 TGAIGARLSSDAALVRSLVGD-TLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLG 845
G+ A + VR TL+ L+ + LVIA L + L PL+
Sbjct: 242 VGSF-ANQLREFESVRDFFTSATLTALIDLPFALLFLLVIAIIG-GPLVWVPLVAIPLIL 299
Query: 846 ITGHIQMKSMKGFSANAENMYEEASQ---VASDAVSSIRTVASFCAEEKVMKLYKKKCEG 902
+ G + + + S AE E++Q V +++S + T+ + AE + + +++
Sbjct: 300 LPGLLLQRPL---SRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAA 356
Query: 903 PIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAI 962
++G++ +S + + F + VG L+ + T + LS A+
Sbjct: 357 LARSGLKSRFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVM-LSGRAL 415
Query: 963 G-ISQTSSLASDASKAKSSAASVFGLIDQ-VSKIDSSEYTGRTLENVMGEVQFLRVSFKY 1020
+ Q + L + +AK++ S+ L+ V + + + + R + GE++F VSF Y
Sbjct: 416 APLGQLAGLLTRYQQAKTALQSLDELMQLPVERPEGTRFLHR--PRLQGEIEFRNVSFAY 473
Query: 1021 PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL 1080
P + ++ LTI PG+ +A++G GSGKST++ LL Y P+ G + LDGV+I+++
Sbjct: 474 PGQET-PALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQI 532
Query: 1081 QVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYD 1125
LR+ +G V Q+P LF T+R NI AE+A F+ +G D
Sbjct: 533 DPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLD 592
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
+GERG LSGGQ+Q VA+ARA++++P ILLLDE TSA+D SE +D L + + +T
Sbjct: 593 MQIGERGRSLSGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKT 652
Query: 1186 TLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214
++V HR S + I V+ G IV G
Sbjct: 653 LVLVTHRTSLLDLVDRIIVMDNGRIVADG 681
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 223 bits (571), Expect = 2e-62
Identities = 149/444 (33%), Positives = 244/444 (54%), Gaps = 27/444 (6%)
Query: 191 ASFIGGFLI---AFFKGWLLTLT-MLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATV 246
A+F+ FL+ AF W L++ M+ I ++IA +VM + A+ + ++ V
Sbjct: 139 ATFVALFLLIPTAFAMDWRLSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHV 198
Query: 247 VAQTIGSIRTVASF---TGEQQA-SSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSA 302
+ +I ++ V S+ E A N L Y LA+GL AS +
Sbjct: 199 -SDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWWALASGLNRMASTISMMCI 257
Query: 303 YGLGVWYGAKLILEKGYSGGDVMSVI--FGVLIGSMSLGQASPCLSAFAAGQAAAFKFF- 359
+G L+++ S G+V++ I +LIG L Q S ++ +A FF
Sbjct: 258 LVIG----TVLVIKGELSVGEVIAFIGFANLLIGR--LDQMSGFITQIFEARAKLEDFFD 311
Query: 360 --EAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAA 417
+++ ++ E + +L +++G +E + + F + Q + G A
Sbjct: 312 LEDSVFQREEP----ADAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVA 365
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477
+VG +G+GK+T+I+L+QR YDP G++LIDG+++ + +R+ I V Q+ L + SI
Sbjct: 366 IVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTRESLRKSIATVFQDAGLFNRSI 425
Query: 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537
R+NI G+ AT EE+ AA+AA A FI G DT VGE G +LSGG++QR+AIARA
Sbjct: 426 RENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGERQRLAIARA 485
Query: 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQG 597
++K+ IL+LDEATSALD E+ V+ A+D + NRTT I++HRLS +RNA+++ + QG
Sbjct: 486 ILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQG 545
Query: 598 KIVEKGTHSELLENPYGAYNRLIR 621
+++EKG+ EL+ G + +L+R
Sbjct: 546 RLIEKGSFQELI-QKDGRFYKLLR 568
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 222 bits (568), Expect = 5e-62
Identities = 90/249 (36%), Positives = 147/249 (59%), Gaps = 2/249 (0%)
Query: 374 NGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
++ +EL++V+F+YP + + L F L + G A++G SGSGKST++ L+
Sbjct: 326 PDEQTATTGQALELRNVSFTYPGQQ-TKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLL 384
Query: 434 QRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEI 493
+DPQ G + ++GV + + +RE I +++Q L S ++RDN+ A+ EE+
Sbjct: 385 AGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEEL 444
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
AA + +++ P GL+T +GE G +LSGG+++R+A+ARA++ D + LLDE T
Sbjct: 445 WAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEG 504
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPY 613
LD + R V L +T ++V+HRL + + I V+ GKI+E+GTH+ELL N
Sbjct: 505 LDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-N 563
Query: 614 GAYNRLIRL 622
G Y RL +L
Sbjct: 564 GRYKRLYQL 572
|
Length = 573 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 220 bits (562), Expect = 2e-61
Identities = 151/556 (27%), Positives = 246/556 (44%), Gaps = 40/556 (7%)
Query: 700 GIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCK 759
GI I +LA ++ L E +L + ++ + + L A K
Sbjct: 13 GIAIIAQAALLADILTKLIE--GQLFQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAK 70
Query: 760 LIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATA 819
+ +R + +K+ ++G A G+ + L + +
Sbjct: 71 VRASLRQLVLDKLA--KLGPAFIAQKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVP 128
Query: 820 VVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSS 879
++ L+ F W AL++L PL+ + + + K S + S D +
Sbjct: 129 LLILIAIFFFNWAAALILLITAPLIPLFMILVGLAAKDASEKQFSALARLSGHFLDRLRG 188
Query: 880 IRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS--GIGFGLSFFFFFMAYA----VTF 933
+ T+ +F E + +K E R+ MS I F S F AY V
Sbjct: 189 LETLRAFGRTEATEERIRKDSED-----FRKATMSVLRIAFLSSAVLEFFAYLSIALVAV 243
Query: 934 YVGAKLVDHKQATFTEVFRVFFALSMTA---IGISQTSSLASDASKAKSSAASVFGLIDQ 990
Y+G +L+ T F F L + + S A+ +++A +F L++
Sbjct: 244 YIGFRLLGEGDLTL---FAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLES 300
Query: 991 VSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGS 1050
S E+ +SF+YP DL LTI G+ ALVG SG+
Sbjct: 301 PVATPGSGEKAEVANEPPIEISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGA 358
Query: 1051 GKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--- 1107
GKST+++LL F P+ G I ++G++++ L + R+Q+ VSQ P LF+ TIR NI
Sbjct: 359 GKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQISWVSQNPYLFAGTIRENILLA 418
Query: 1108 ------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155
+ A F+ +G DT++GE G LSGGQ QR+A+ARA++ +
Sbjct: 419 RPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477
Query: 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
LLLDE T+ LD E+E+++ AL ++ +T LV+ HRL +A I V+ G +VE+G+
Sbjct: 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGT 537
Query: 1216 HESLISTKNGIYTSLI 1231
HE L S K G+Y +L+
Sbjct: 538 HEEL-SEKQGLYANLL 552
|
Length = 559 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 222 bits (569), Expect = 5e-61
Identities = 143/528 (27%), Positives = 239/528 (45%), Gaps = 107/528 (20%)
Query: 147 ILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFI--QFGASFIGGFLIAFFKG 204
ILR + FF + + G++ R+ + ++V +F+ Q + + ++ F+
Sbjct: 237 ILRLPVRFFAQR-HAGDIASRVQ---------LNDQVAEFLSGQLATTALDAVMLVFY-- 284
Query: 205 WLLTLTMLSSIPPL-----VIAGVVMIKLVGNLASQKQAADSL------AATVVAQTIGS 253
L +L P L A + ++ L + A L V + S
Sbjct: 285 --ALLMLLYD-PVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQS 341
Query: 254 IRTVASFTGE----QQASSIYNKCLVKSYKSSVQE-GLATG-LGLGASVFIIFSAYGLGV 307
I T+ + E + + K L ++ QE G+ T LG+ ++ + L +
Sbjct: 342 IETLKASGLESDFFSRWAGYQAKLL-----NAQQELGVLTQILGVLPTLLTSLN-SALIL 395
Query: 308 WYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN---- 363
G ++E G +++G L AF Q+ F E +N
Sbjct: 396 VVGGLRVME-----------------GQLTIGM----LVAF---QSLMSSFLEPVNNLVG 431
Query: 364 ---RKPEIDLCCVNGKKLDDI-------------------------RGDIELKDVNFSYP 395
E++ + +LDD+ G +EL+++ F Y
Sbjct: 432 FGGTLQELE---GDLNRLDDVLRNPVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGY- 487
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455
+ + ++ F L + G ALVG SGSGKST+ L+ Y P +GE+L DG+ +E
Sbjct: 488 SPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIP 547
Query: 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT 515
+ + + +V Q+ L ++RDN+ ++ A + A I + P G D
Sbjct: 548 REVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDA 607
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR-- 573
+ E G LSGGQ+QR+ IARA++++P IL+LDEATSALD E+ +++ + L R R
Sbjct: 608 ELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR----RGC 663
Query: 574 TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
T +IV+HRLS IR+ + I V+++GK+V++GTH EL GAY RLIR
Sbjct: 664 TCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEELWAVG-GAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 1e-60
Identities = 89/221 (40%), Positives = 131/221 (59%), Gaps = 16/221 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
G ++F VSF YP + I ++ LTI G+ +A++G GSGKST++ LL Y P+SG
Sbjct: 1 GRIEFRNVSFSYPNQE-IPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSG 59
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANA 1113
+ LDG +I++L LR+ +G V Q+ LF T+R NI AE+A
Sbjct: 60 SVLLDGTDIRQLDPADLRRNIGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGV 119
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
F++ G D +GERG LSGGQ+Q VA+ARA++ +P ILLLDE TSA+D+ SE +
Sbjct: 120 TDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDPPILLLDEPTSAMDMNSEERL 179
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214
++ L Q++ D+T +++ HR S + I V+ G IV G
Sbjct: 180 KERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 215 bits (549), Expect = 2e-58
Identities = 168/592 (28%), Positives = 282/592 (47%), Gaps = 46/592 (7%)
Query: 48 HKLLSFADLLDSVLMLVGTI--AATGNGLCVPFVALLFGDLMDS-IGQNATKTLAIHGVL 104
+ LL F L+ L+ I AA L + ++D+ I TL I
Sbjct: 142 NSLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMMGTLGI---- 197
Query: 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV 164
+S + + + S+ Q+ + G+R + I Y++ + ++FF TGE+
Sbjct: 198 -ISIGLIIAYIIQQILSYIQIFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEI 255
Query: 165 VGRISGDTLLIQDAIGEKV-GKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223
V R + D I DA+ + F+ I G + + LL L L SIP + +
Sbjct: 256 VSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVR-QNMLLFLLSLLSIPVYAVIII 313
Query: 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQA--------SSIYNKCLV 275
+ + L A+++ + + + + I T+ S T E + NK
Sbjct: 314 LFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFK 373
Query: 276 KSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGS 335
Q+ + L +V I+ W GA L++ + G +++ F L+
Sbjct: 374 YQKADQGQQAIKAVTKLILNVVIL--------WTGAYLVMRGKLTLGQLIT--FNALLSY 423
Query: 336 MSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLC---CVNGKKLD---DIRGDIELKD 389
L ++ QAA A NR E+ L +N KK ++ GDI + D
Sbjct: 424 F-LTPLENIINLQPKLQAARV----ANNRLNEVYLVDSEFINKKKRTELNNLNGDIVIND 478
Query: 390 VNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV 449
V++SY IL+ L I + +VG SGSGKST+ L+ F+ ++GE+L++G
Sbjct: 479 VSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGF 536
Query: 450 NLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKN 508
+LK+ +R+ I + QEP + S SI +N+ G K + +++EI AA E A I+N
Sbjct: 537 SLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIEN 596
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR 568
+P G T + E G +SGGQKQR+A+ARA++ D ++L+LDE+TS LD+ + + + L
Sbjct: 597 MPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLN 656
Query: 569 VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
+ ++T + V+HRLS+ + ++ I V+ GKI+E+G+H ELL + G Y LI
Sbjct: 657 -LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELL-DRNGFYASLI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 208 bits (531), Expect = 3e-57
Identities = 94/269 (34%), Positives = 159/269 (59%), Gaps = 5/269 (1%)
Query: 353 AAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPN 412
A+A + E +KPE+ + D + + L +V+F+YP +P +L G L I
Sbjct: 309 ASARRINEITEQKPEVTFPTTSTAAAD--QVSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL 472
G AL+G +G GKST++ L+ R +DPQ GE+L++G + ++ +R+ I +VSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 473 LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532
S+++RDN+ +A+ E + + +++ +GL+ +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLSGGEQRRL 484
Query: 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIA 592
IARA++ D +LLLDE T LD+E+ R + E L N+T ++++HRL+ + + I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 593 VIQQGKIVEKGTHSELLENPYGAYNRLIR 621
V+ G+I+E+GTH ELL G Y +L +
Sbjct: 545 VMDNGQIIEQGTHQELLAQ-QGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 207 bits (528), Expect = 4e-57
Identities = 95/248 (38%), Positives = 135/248 (54%), Gaps = 4/248 (1%)
Query: 347 AFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGF 406
A A G AAA F ++ P +E V+ +YP R L
Sbjct: 286 ARADGVAAAEALFAVLDAAPRP--LAGKAPVTAAPAPSLEFSGVSVAYPGRR--PALRPV 341
Query: 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLV 466
+P G ALVG SG+GKST+++L+ F DP G + ++GV L + R++I V
Sbjct: 342 SFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWRDQIAWV 401
Query: 467 SQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526
Q P L + +I +NI + A+ EI+ A E A F+ LPQGLDT +GE G LSG
Sbjct: 402 PQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSG 461
Query: 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR 586
GQ QR+A+ARA ++D +LLLDE T+ LD+E+ V EAL + RT ++V+HRL+L
Sbjct: 462 GQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLLVTHRLALAA 521
Query: 587 NANIIAVI 594
A+ I V+
Sbjct: 522 LADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 195 bits (499), Expect = 6e-57
Identities = 79/223 (35%), Positives = 136/223 (60%), Gaps = 4/223 (1%)
Query: 383 GDIELKDVNFSYPARPDEQ-ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
GDIE K+V+ Y RP+ +L I G +VG +GSGKS+++ + R + +
Sbjct: 1 GDIEFKNVSLRY--RPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSS 58
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAAN 501
G +LIDGV++ + L +R +I ++ Q+PVL S +IR N+ + + EE+ A E
Sbjct: 59 GSILIDGVDISKIGLHDLRSRISIIPQDPVLFSGTIRSNLDPFGEY-SDEELWQALERVG 117
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
F+++LP GLDT V E G LS GQ+Q + +ARA+++ +IL+LDEAT+++D E+ +
Sbjct: 118 LKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSKILVLDEATASVDPETDAL 177
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604
+Q+ + + T + ++HRL I +++ I V+ +G++VE +
Sbjct: 178 IQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 206 bits (527), Expect = 8e-57
Identities = 157/519 (30%), Positives = 255/519 (49%), Gaps = 65/519 (12%)
Query: 136 AARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIG 195
A +R + + RQ F+ + TG+++ R + D + A GE V + S +
Sbjct: 68 AVELREDFYRQLSRQHPEFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVD---SLVM 123
Query: 196 G--FLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQK----QAADSLAATVVAQ 249
G LI LT+L+ +P V+A +MIK G+ ++ QAA S +
Sbjct: 124 GCAVLIVMSTQISWQLTLLALLPMPVMA--IMIKRYGDQLHERFKLAQAAFSSLNDRTQE 181
Query: 250 TIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASV---F--IIFSAYG 304
++ SIR + +F E + S+++ + K +++ A + F I+ A G
Sbjct: 182 SLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRV---------ARIDARFDPTIYIAIG 232
Query: 305 LGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQAS-----------PCLSAFA---- 349
+ A L+ GG M V+ GS++LGQ + P L A A
Sbjct: 233 M-----ANLL---AIGGGSWM-----VVNGSLTLGQLTSFVMYLGLMIWPML-ALAWMFN 278
Query: 350 ---AGQAAAFKFFEAINRKPEIDLCCVNGKK-LDDIRGDIELKDVNFSYPARPDEQILNG 405
G AA + + P + +G + + + RG++++ F+YP D L
Sbjct: 279 IVERGSAAYSRIRAMLAEAPVVK----DGSEPVPEGRGELDVNIRQFTYPQT-DHPALEN 333
Query: 406 FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465
+ G + + G +GSGKST++SLIQR +D G++ + L + QL R ++ +
Sbjct: 334 VNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAV 393
Query: 466 VSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525
VSQ P L S ++ +NIA G+ AT++EI+ A A+ I LPQG DT VGE G+ LS
Sbjct: 394 VSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLS 453
Query: 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585
GGQKQR++IARA++ + IL+LD+A SA+D + + L + RT +I +HRLS +
Sbjct: 454 GGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL 513
Query: 586 RNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624
A+ I V+Q G I ++G H +L + G Y + R Q+
Sbjct: 514 TEASEILVMQHGHIAQRGNHDQLAQQS-GWYRDMYRYQQ 551
|
Length = 569 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 204 bits (522), Expect = 8e-56
Identities = 83/214 (38%), Positives = 135/214 (63%), Gaps = 6/214 (2%)
Query: 398 PDEQILNG---FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF 454
PD + L G F +P G ALVG SG+GK+++++ + F P G + I+G+ L+E
Sbjct: 360 PDGKTLAGPLNFT--LPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELREL 416
Query: 455 QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD 514
+ R+ + V Q P L ++RDN+ G A+ E++Q A E A S F+ LPQGLD
Sbjct: 417 DPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD 476
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRT 574
T +G+ LS GQ QR+A+ARA+++ ++LLLDE T++LD+ S ++V +AL+ +T
Sbjct: 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQT 536
Query: 575 TVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
T++V+H+L + + I V+Q G+IV++G ++EL
Sbjct: 537 TLMVTHQLEDLAQWDQIWVMQDGQIVQQGDYAEL 570
|
Length = 588 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 205 bits (523), Expect = 3e-55
Identities = 109/260 (41%), Positives = 159/260 (61%), Gaps = 10/260 (3%)
Query: 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSG 423
PE+D + KL G IE+ V F Y RPD IL+ L I G A+VG SG
Sbjct: 435 LPEVDEAKTDPGKL---SGAIEVDRVTFRY--RPDGPLILDDVSLQIEPGEFVAIVGPSG 489
Query: 424 SGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAY 483
SGKST++ L+ F P++G V DG +L ++ +R ++G+V Q L+S SI +NIA
Sbjct: 490 SGKSTLLRLLLGFETPESGSVFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIA- 548
Query: 484 GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543
G T +E AA A + I+ +P G+ T + E G LSGGQ+QR+ IARA+++ PR
Sbjct: 549 GGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPR 608
Query: 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603
ILL DEATSALD+ + +V E+L+R + T ++++HRLS IRNA+ I V+ G++V++G
Sbjct: 609 ILLFDEATSALDNRTQAIVSESLER--LKVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666
Query: 604 THSELLENPYGAYNRLIRLQ 623
T+ EL+ G + +L R Q
Sbjct: 667 TYDELMARE-GLFAQLARRQ 685
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 200 bits (512), Expect = 1e-54
Identities = 92/269 (34%), Positives = 146/269 (54%), Gaps = 20/269 (7%)
Query: 979 SSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPP 1038
+SA + + +Q ++ + + + VSF YP +P V + L L I
Sbjct: 309 ASARRINEITEQKPEVTFPTTSTAAADQ--VSLTLNNVSFTYPDQPQ-PVLKGLSLQIKA 365
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098
G+ +AL+G +G GKST++ LL R +DP G I L+G I LRQ + VVSQ L
Sbjct: 366 GEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSEAALRQAISVVSQRVHL 425
Query: 1099 FSDTIRANIAEMANANG----FISGLQ-----------EGYDTLVGERGVQLSGGQKQRV 1143
FS T+R N+ +A N I LQ +G + +GE G QLSGG+++R+
Sbjct: 426 FSATLRDNLL-LAAPNASDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQRRL 484
Query: 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIA 1203
IARA++ + +LLLDE T LD E+ER + + L + ++T L++ HRL+ ++ I
Sbjct: 485 GIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRIC 544
Query: 1204 VVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
V+ G I+E+G+H+ L++ + G Y L +
Sbjct: 545 VMDNGQIIEQGTHQELLA-QQGRYYQLKQ 572
|
Length = 574 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 201 bits (514), Expect = 3e-54
Identities = 144/474 (30%), Positives = 235/474 (49%), Gaps = 48/474 (10%)
Query: 784 DHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLAL----LVLA 839
+STG + +R + + R L G TL+ L+ A++ L + F W+LAL L L
Sbjct: 229 QYSTGDLASRAMGISQIRRILSGSTLTTLLSGI-FALLNLGLMFYYSWKLALVAVALALV 287
Query: 840 IFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKV----MKL 895
+ + G +Q++ + + + Q+ + +S +R AE + KL
Sbjct: 288 AIAVTLVLGLLQVRKERRLLELSGKISGLTVQLI-NGISKLRVAG---AENRAFARWAKL 343
Query: 896 YKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFF 955
+ ++ + + A + L++ L A F L+ A + F
Sbjct: 344 FSRQRKLELSAQRIENLLTVFNAVLPVL----TSAALFAAAISLL--GGAGLS--LGSFL 395
Query: 956 ALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSS--EYTGRTLE--NVMGEV 1011
A TA G + S S +V L ++ I + E + + G +
Sbjct: 396 AF-NTAFGSFSGAVTQL--SNTLISILAVIPLWERAKPILEALPEVDEAKTDPGKLSGAI 452
Query: 1012 QFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ RV+F+Y P P I D+ L I PG+ +A+VG SGSGKST++ LL F P SG +
Sbjct: 453 EVDRVTFRYRPDGPLI--LDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSV 510
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AEMANANGF 1116
DG ++ L V+ +R+Q+GVV Q L S +I NI A MA
Sbjct: 511 FYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAED 570
Query: 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
I + G T++ E G LSGGQ+QR+ IARA+V++P+ILL DEATSALD ++ +V ++
Sbjct: 571 IRAMPMGMHTVISEGGGTLSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSES 630
Query: 1177 LDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
L+++ V R +V+AHRLSTI+NA I V+ G +V++G+++ L++ + G++ L
Sbjct: 631 LERLKVTR--IVIAHRLSTIRNADRIYVLDAGRVVQQGTYDELMA-REGLFAQL 681
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 200 bits (511), Expect = 1e-53
Identities = 154/610 (25%), Positives = 260/610 (42%), Gaps = 68/610 (11%)
Query: 662 PASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTN---GIIIPIFGVMLAAMVNTLN 718
P +K P + + L L L +A + G++IP F + +
Sbjct: 130 PEFQKGGRKPSLLRALWRRLRGSRGALLYL-LLAGLLLVLPGLVIPAFSQIFVDEI---- 184
Query: 719 EPKEELMRHSKHWAL-MFVALGAASLLTSPLS---MYCFAVAGCKLIKRIRSMCFEKVVY 774
L++ + W + + +G +LL L+ +Y KL + + ++
Sbjct: 185 -----LVQGRQDWLRPLLLGMGLTALLQGVLTWLQLYYLRRLQIKLAVGMSARFLWHILR 239
Query: 775 MEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834
+ V +F + G I +R+ + + L G + + + V ++ L
Sbjct: 240 LPVRFFAQ--RHAGDIASRVQLNDQVAEFLSGQLATTAL-DAVMLVFYALLMLLYDPVLT 296
Query: 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEA--SQVASDAVSSIRTVASFCAEE-- 890
L+ F + + +Q+ S + AN + + VA + SI T+ + E
Sbjct: 297 -LIGIAFAAINV-LALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDF 354
Query: 891 --KVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQAT-- 946
+ K + G+ ++ + L+ A+ VG V Q T
Sbjct: 355 FSRWAGYQAKLLNAQQELGVLTQILGVLPTLLTSL----NSALILVVGGLRVMEGQLTIG 410
Query: 947 ----FTEVFRVFFALSMTAIGISQT-SSLASDASKAKSSA-ASVFGLIDQVSKIDSSEYT 1000
F + F +G T L D ++ V L+++ +
Sbjct: 411 MLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVDPLLEEEEAPAAGSEP 470
Query: 1001 GRTLENVMGEVQFLRVSFKY-PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL 1059
L G V+ ++F Y P P + + LT+ PG+ +ALVG SGSGKST+ L+
Sbjct: 471 SPRLS---GYVELRNITFGYSPLEPP--LIENFSLTLQPGQRVALVGGSGSGKSTIAKLV 525
Query: 1060 QRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------AEM 1110
Y P SG I DG+ +++ + L + +V Q+ LF T+R N+ A++
Sbjct: 526 AGLYQPWSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADL 585
Query: 1111 ANA------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA 1164
A + I+ GYD + E G LSGGQ+QR+ IARA+V+ P IL+LDEATSA
Sbjct: 586 VRACKDAAIHDVITSRPGGYDAELAEGGANLSGGQRQRLEIARALVRNPSILILDEATSA 645
Query: 1165 LDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222
LD E+E+++ D L + R T ++VAHRLSTI++ I V+ +G +V++G+HE L
Sbjct: 646 LDPETEKIIDDNLRR----RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQRGTHEEL-WA 700
Query: 1223 KNGIYTSLIE 1232
G Y LI
Sbjct: 701 VGGAYARLIR 710
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 205 bits (522), Expect = 2e-53
Identities = 187/728 (25%), Positives = 317/728 (43%), Gaps = 130/728 (17%)
Query: 9 DTSTGQAPDQSTGN-------FTDKRCDHERGMNINIITVNGRIPFHKLL---------- 51
D+ G PD+ GN ++K+ N + G++PF + L
Sbjct: 753 DSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNN 812
Query: 52 -------SFADLLDSVLMLVGTIAATGNGLCVPFVALLF----GDLMDSIGQNATKTLAI 100
F+ D ++ + + A G P ALL+ L D A
Sbjct: 813 LRIVYREIFSYKKDVTIIALSILVAGG---LYPVFALLYAKYVSTLFDFANLEANSN--- 866
Query: 101 HGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEIN 160
K S + +A+ ++ + + GE+ ++ E IL Q+I+FFD++ +
Sbjct: 867 ----KYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH 922
Query: 161 T-GEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLT--LTMLSSIPP 217
G + I+ D L++ + + F F F+ +++F+ ++ LT I
Sbjct: 923 APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFM 982
Query: 218 LVIAGVVMIKLVGNLASQKQAADSLAAT---------------VVAQTIGSIRTVASFTG 262
V A + +L N +K+ + ++ + ++ TV +
Sbjct: 983 RVFA--IRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGL 1040
Query: 263 EQQASSIYNKCLVKSYKSSVQEGLAT----GLGLGASVFIIFSAYGLGVWYGAKLILEKG 318
E ++ K + S K ++ L G A +FI AY W+G+ LI
Sbjct: 1041 EDYFCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAY----WFGSFLIRRGT 1096
Query: 319 YSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL 378
D M +F L G+ + + K++ I RK ID+ G ++
Sbjct: 1097 ILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRI 1156
Query: 379 ---DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435
+DI+G IE+ DVNF Y +RP+ I + A+VG +GSGKSTV+SL+ R
Sbjct: 1157 KNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMR 1216
Query: 436 FYDPQAGEVLI-------DGVNLKEFQ--------------------------------- 455
FYD + ++ D N +++Q
Sbjct: 1217 FYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNS 1276
Query: 456 --------------LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAAN 501
LK +R +VSQEP+L + SI +NI +GK AT+E+++ A + A
Sbjct: 1277 GKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAA 1336
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
FI++LP DTNVG +G LSGGQKQR+AIARA++++P+ILLLDEATS+LDS S ++
Sbjct: 1337 IDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396
Query: 562 VQEALDRV--MINRTTVIVSHRLSLIRNANIIAVI----QQGKIVE-KGTHSELLENPYG 614
+++ + + ++T + ++HR++ I+ ++ I V + G V+ GTH ELL G
Sbjct: 1397 IEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDG 1456
Query: 615 AYNRLIRL 622
Y + ++L
Sbjct: 1457 VYKKYVKL 1464
|
Length = 1466 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 196 bits (500), Expect = 4e-53
Identities = 116/433 (26%), Positives = 198/433 (45%), Gaps = 23/433 (5%)
Query: 819 AVVGLVIAFKACWQLALLV-LAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAV 877
AVV + ++F LALL+ L + LL I + ++ + F A+ +D V
Sbjct: 147 AVVTIGLSF-FSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWV 205
Query: 878 SSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGI-GFGLSFFFFFMAYAVTFYVG 936
+ F AE+ + +KA +Q +G+ L + + ++
Sbjct: 206 QGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMA 265
Query: 937 AKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDS 996
A++ A + + + +SA + ++DQ ++
Sbjct: 266 AQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTF 325
Query: 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056
+ T ++ VSF YP + + ++ LT+ G+ +A++G SGSGKST++
Sbjct: 326 PDEQTATTGQA---LELRNVSFTYPGQQT-KALKNFNLTLAQGEKVAILGRSGSGKSTLL 381
Query: 1057 SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------- 1107
LL +DP G ITL+GVEI L + LR+ + V++Q LFS T+R N+
Sbjct: 382 QLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASD 441
Query: 1108 AEMANA------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161
E+ A + +G +T +GE G +LSGG+++R+A+ARA++ + + LLDE
Sbjct: 442 EELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEP 501
Query: 1162 TSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221
T LD +ER V L + +T L+V HRL ++ I V+ G I+E+G+H L
Sbjct: 502 TEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAEL-L 560
Query: 1222 TKNGIYTSLIEPH 1234
NG Y L +
Sbjct: 561 ANNGRYKRLYQLD 573
|
Length = 573 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 193 bits (491), Expect = 7e-52
Identities = 94/249 (37%), Positives = 153/249 (61%), Gaps = 8/249 (3%)
Query: 379 DDIR----GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434
+D R G I++ +V+F+Y R D +L L +P+ ALVG +GSGKST+ SL+
Sbjct: 331 NDDRPLQSGRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLM 388
Query: 435 RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ 494
+Y GE+ +DG L +R+ + +V Q+PV+L+ + N+ G+ ++E++
Sbjct: 389 GYYPLTEGEIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVW 447
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A E + ++LP GL T +GE G LS GQKQ +A+AR +++ P+IL+LDEAT+ +
Sbjct: 448 QALETVQLAELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANI 507
Query: 555 DSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYG 614
DS + + +Q+AL V + T V+++HRLS I A+ I V+ +G+ VE+GTH +LL G
Sbjct: 508 DSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAA-QG 566
Query: 615 AYNRLIRLQ 623
Y ++ +LQ
Sbjct: 567 RYWQMYQLQ 575
|
Length = 592 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 191 bits (487), Expect = 8e-52
Identities = 89/257 (34%), Positives = 135/257 (52%), Gaps = 19/257 (7%)
Query: 964 ISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTR 1023
+ Q + + ++A ++F ++D + + + ++F VS YP R
Sbjct: 277 LRQLGAQYHARADGVAAAEALFAVLDAAPRPLAGK--APVTAAPAPSLEFSGVSVAYPGR 334
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083
R + T+PPG+ +ALVG SG+GKST+++LL F DP+ G I ++GV +
Sbjct: 335 R--PALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADAD 392
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLV 1128
R Q+ V Q P LF+ TI NI E A + F++ L +G DT +
Sbjct: 393 SWRDQIAWVPQHPFLFAGTIAENIRLARPDASDAEIREALERAGLDEFVAALPQGLDTPI 452
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
GE G LSGGQ QR+A+ARA +++ +LLLDE T+ LD E+E V +AL + RT L+
Sbjct: 453 GEGGAGLSGGQAQRLALARAFLRDAPLLLLDEPTAHLDAETEAEVLEALRALAQGRTVLL 512
Query: 1189 VAHRLSTIKNAHLIAVV 1205
V HRL+ A I V+
Sbjct: 513 VTHRLALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 182 bits (465), Expect = 7e-51
Identities = 94/242 (38%), Positives = 142/242 (58%), Gaps = 24/242 (9%)
Query: 385 IELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
IEL++V+ ++ + L+ L IP G I ++G SG+GKST++ LI P +G
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 443 EVLIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHA--TKEEIQA- 495
V +DG + L E +L+ +R+KIG++ Q LLSS ++ +N+A+ A K EI+
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
AE + L D QLSGGQKQRVAIARA+ +P+ILL DEATSALD
Sbjct: 122 VAELLE----LVGLSDKADRYPA----QLSGGQKQRVAIARALANNPKILLCDEATSALD 173
Query: 556 SESGRMVQEALDRVMINR----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
E+ + + E L INR T V+++H + +++ + +AV+ QG++VE+GT SE+
Sbjct: 174 PETTQSILELLKD--INRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFA 231
Query: 611 NP 612
NP
Sbjct: 232 NP 233
|
Length = 339 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 190 bits (484), Expect = 3e-50
Identities = 134/482 (27%), Positives = 220/482 (45%), Gaps = 64/482 (13%)
Query: 787 TGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGI 846
TG I +R + ++++ +L LSL + +VGL + + L LL L P+ +
Sbjct: 252 TGEIVSRFTDASSIIDALASTILSLFLDMWILVIVGLFLVRQNM-LLFLLSLLSIPVYAV 310
Query: 847 TGHIQMKSMKGFSANAENMYEEASQVASDA----VSSIRTVASFCAEEKVMK-------- 894
+ ++ N + M +A+ V + + ++ I T+ S +E +
Sbjct: 311 IIILFKRTFNKL--NHDAM--QANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGD 366
Query: 895 LYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRV- 953
K + +Q + + L+ V + GA LV + T ++
Sbjct: 367 YLNKSFKYQKADQGQQAIKAVTKLILN--------VVILWTGAYLVMRGKLTLGQLITFN 418
Query: 954 ----FFALSMTAIGISQTSSLASDASKAKSSAASV-FGLIDQVSKIDSSEYTGRT---LE 1005
+F + I Q K AA V +++V +DS + L
Sbjct: 419 ALLSYFLTPLENIINLQP----------KLQAARVANNRLNEVYLVDSEFINKKKRTELN 468
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
N+ G++ VS+ Y + D+ LTI +VG SGSGKST+ LL F+
Sbjct: 469 NLNGDIVINDVSYSYGYGS--NILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQA 526
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----------------AE 1109
SG I L+G ++ + LRQ + + QEP +FS +I N+ E
Sbjct: 527 RSGEILLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACE 586
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+A I + GY T + E G +SGGQKQR+A+ARA++ + K+L+LDE+TS LD +
Sbjct: 587 IAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNLDTIT 646
Query: 1170 ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
E+ + + L + D+T + VAHRLS K + I V+ G I+E+GSH+ L+ +NG Y S
Sbjct: 647 EKKIVNNLLN-LQDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHDELLD-RNGFYAS 704
Query: 1230 LI 1231
LI
Sbjct: 705 LI 706
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 187 bits (477), Expect = 3e-50
Identities = 90/219 (41%), Positives = 129/219 (58%), Gaps = 16/219 (7%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076
F YP H ++ T+ PG+ + + G +GSGKST++SL+QR +D S G I +
Sbjct: 320 QFTYPQTDH-PALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIP 378
Query: 1077 IQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQ 1121
+ KLQ+ R ++ VVSQ P LFSDT+ NIA +A+ + I L
Sbjct: 379 LTKLQLDSWRSRLAVVSQTPFLFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLP 438
Query: 1122 EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
+GYDT VGERGV LSGGQKQR++IARA++ +IL+LD+A SA+D +E + L Q
Sbjct: 439 QGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWG 498
Query: 1182 VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220
RT ++ AHRLS + A I V+ G I ++G+H+ L
Sbjct: 499 EGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLA 537
|
Length = 569 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 181 bits (460), Expect = 2e-48
Identities = 138/521 (26%), Positives = 234/521 (44%), Gaps = 65/521 (12%)
Query: 113 LALGAGVASFFQVACWMIT----------------GERQAARIRSF--YLETILRQDIAF 154
LALG+ VA V+ W+I+ R R+ YLE ++ D A
Sbjct: 24 LALGSAVALLG-VSAWLISRAAEMPPVLYLSVAAVAVRAFGIGRAVFRYLERLVGHDAAL 82
Query: 155 ----------FDK----------EINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFI 194
+++ + G+++GR+ D +QD V + G + +
Sbjct: 83 RSLGALRVRVYERLARQALAGRRRLRRGDLLGRLGADVDALQDLY---VRVIVPAGVALV 139
Query: 195 GGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLA-----SQKQAADSLAATVVAQ 249
G L L L++AG V + A + + LAA +
Sbjct: 140 VGAAAVAAIAVLSVPAALILAAGLLLAGFVAPLVSLRAARAAEQALARLRGELAAQLTDA 199
Query: 250 TIGSIRTVAS--FTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGV 307
G+ VAS ++ L ++ + + A LGA++ ++ A GL V
Sbjct: 200 LDGAAELVASGALPAALAQVEEADRELTRAERRA-----AAATALGAALTLL--AAGLAV 252
Query: 308 WYGAKLILEKGYSGGDVMSVIFGVLI-GSMSLGQASPCLSAFAA----GQAAAFKFFEAI 362
GA + G + V VL+ ++ +A L A A +AAA + E +
Sbjct: 253 L-GALWAGGPAVADGRLAPVTLAVLVLLPLAAFEAFAALPAAAQQLTRVRAAAERIVEVL 311
Query: 363 NRKPEIDLCCVNGKK-LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGT 421
+ + + + +EL+D++ YP +L+G L +P G A++G
Sbjct: 312 DAAGPVAEGSAPAAGAVGLGKPTLELRDLSAGYP--GAPPVLDGVSLDLPPGERVAILGP 369
Query: 422 SGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481
SGSGKST+++ + DP GEV +DGV + +R ++ + +Q+ L +++R+N+
Sbjct: 370 SGSGKSTLLATLAGLLDPLQGEVTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENL 429
Query: 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541
+ AT EE+ AA E + +++ LP GLDT +GE G +LSGG++QR+A+ARA++ D
Sbjct: 430 RLARPDATDEELWAALERVGLADWLRALPDGLDTVLGEGGARLSGGERQRLALARALLAD 489
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582
ILLLDE T LD+E+ + E L + RT V+++H L
Sbjct: 490 APILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 181 bits (461), Expect = 6e-48
Identities = 91/230 (39%), Positives = 133/230 (57%), Gaps = 18/230 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
G + VSF Y R V +++ L++P +ALVG +GSGKST+ SLL +Y + G
Sbjct: 339 GRIDIDNVSFAY--RDDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEG 396
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANAN 1114
I LDG + L LRQ + +V Q+PV+ +DT AN+ E
Sbjct: 397 EIRLDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLA 456
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
L +G T +GE+G LS GQKQ +A+AR +V+ P+IL+LDEAT+ +D +E+ +Q
Sbjct: 457 ELARSLPDGLYTPLGEQGNNLSVGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQ 516
Query: 1175 DALDQVMVDRTTLVV-AHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTK 1223
AL + + TTLVV AHRLSTI A I V+ +G VE+G+H+ L++ +
Sbjct: 517 QAL-AAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLLAAQ 565
|
Length = 592 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 168 bits (428), Expect = 3e-47
Identities = 85/241 (35%), Positives = 125/241 (51%), Gaps = 31/241 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IEL+D+N Y D+ L L IP G I AL+G SG GKST++ L+ R D P
Sbjct: 1 IELRDLNVYYG---DKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAP 57
Query: 440 QAGEVLIDGVNLKE--FQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-------KTHATK 490
GEVL+DG ++ + + +R ++G+V Q+P SI DN+AYG
Sbjct: 58 DEGEVLLDGKDIYDLDVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELD 117
Query: 491 EEIQAAAEAANASHFIKNLPQGLDTNVGE--HGIQLSGGQKQRVAIARAMIKDPRILLLD 548
E ++ A A L V + H + LSGGQ+QR+ +ARA+ +P +LLLD
Sbjct: 118 ERVEEALRKA-----------ALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLD 166
Query: 549 EATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSE 607
E TSALD S ++E + + T VIV+H + R A+ A + G++VE G +
Sbjct: 167 EPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQ 226
Query: 608 L 608
+
Sbjct: 227 I 227
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 166 bits (422), Expect = 2e-46
Identities = 84/244 (34%), Positives = 129/244 (52%), Gaps = 29/244 (11%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
IELK+V+ + + L L +P G I ++G SG+GKST+I I P +G
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 444 VLIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGK--THATKEEIQAAA 497
VL+DG + L +L+ R +IG++ Q LLSS ++ +N+A K EI+
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 498 EA----ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
P QLSGGQKQRV IARA+ +P++LL DEATSA
Sbjct: 122 LELLELVGLEDKADAYPA-----------QLSGGQKQRVGIARALANNPKVLLCDEATSA 170
Query: 554 LDSESGRMVQEALDRVMINR----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
LD E+ + + L INR T V+++H + +++ + +AV+++G++VE+GT E+
Sbjct: 171 LDPETTQSILALLRD--INRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEV 228
Query: 609 LENP 612
NP
Sbjct: 229 FANP 232
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 176 bits (448), Expect = 3e-46
Identities = 75/214 (35%), Positives = 124/214 (57%), Gaps = 17/214 (7%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
L T+P G+ IALVG SG+GK+++++ L F P G + ++G+E+++L + R+ +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDPESWRKHLSW 427
Query: 1092 VSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLS 1136
V Q P L T+R N+ E A + F+ L +G DT +G++ LS
Sbjct: 428 VGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGDQAAGLS 487
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196
GQ QR+A+ARA+++ ++LLLDE T++LD SE++V AL+ +TTL+V H+L +
Sbjct: 488 VGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDL 547
Query: 1197 KNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
I V+ G IV++G + L S G++ +L
Sbjct: 548 AQWDQIWVMQDGQIVQQGDYAEL-SQAGGLFATL 580
|
Length = 588 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (395), Expect = 1e-43
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 29/197 (14%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
VSF+YP V R++ +I PG+++A++G SGSGKST+ L+ P+SG + LDG
Sbjct: 5 NVSFRYPGAEP-PVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDG 63
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
+I + L +G + Q+ LFS +I NI
Sbjct: 64 ADISQWDPNELGDHVGYLPQDDELFSGSIAENI--------------------------- 96
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV-MVDRTTLVVAHRL 1193
LSGGQ+QR+ +ARA+ P+IL+LDE S LD+E ER + A+ + T +V+AHR
Sbjct: 97 LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRP 156
Query: 1194 STIKNAHLIAVVSQGMI 1210
T+ +A I V+ G +
Sbjct: 157 ETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 2e-43
Identities = 70/204 (34%), Positives = 111/204 (54%), Gaps = 26/204 (12%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ VSF YP + +V ++L L + G+ IAL+G SGSGKST++ LL P G I
Sbjct: 1 LSINNVSFSYPEQEQ-QVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
TLDGV + L+ K L + V++Q P LF T+R N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190
G + SGG++QR+A+AR ++++ I+LLDE T LD +ER + + +V+ D+T + +
Sbjct: 96 -GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWIT 154
Query: 1191 HRLSTIKNAHLIAVVSQGMIVEKG 1214
H L+ I++ I + G I+ +G
Sbjct: 155 HHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 7e-43
Identities = 82/221 (37%), Positives = 119/221 (53%), Gaps = 18/221 (8%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
ELK+++FSYP L+ L I G +VG +GSGKST++ L+ P +GEVL
Sbjct: 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 446 IDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG--KTHATKEEIQAAAEAAN 501
+DG +L + LK +R K+GLV Q P ++ + +A+G +EEI+ E A
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
++ L D + LSGGQKQRVAIA + DP ILLLDE T+ LD R
Sbjct: 120 ELVGLEGL---RDRSP----FTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRRE 172
Query: 562 VQEALDRVMINR---TTVIVSHRLSLIRN-ANIIAVIQQGK 598
+ E L + + T +IV+H L L+ A+ + V++ GK
Sbjct: 173 LLELLKK--LKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 152 bits (385), Expect = 7e-42
Identities = 71/209 (33%), Positives = 123/209 (58%), Gaps = 9/209 (4%)
Query: 1009 GEVQFLRVSFKYPTRPHI-EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
GE++ +S +Y P + V +++ + G+ I +VG +G+GKST+I L RF +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTL 1127
G I +DG++I + ++ LR + ++ Q+P LFS TIR+N+ + +E Y L
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFDEYSD-----EEIYGAL 117
Query: 1128 -VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
V E G+ LS GQ+Q + +ARA++K P++L+LDEAT+++D ++ ++Q + + + T
Sbjct: 118 RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTI 177
Query: 1187 LVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
L +AHRL TI + I V+ G + E
Sbjct: 178 LTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 153 bits (389), Expect = 7e-42
Identities = 81/237 (34%), Positives = 132/237 (55%), Gaps = 21/237 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+K+++ S+ D+++L G L + G + ++G SGSGKST++ + +P +G +
Sbjct: 3 IEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSI 59
Query: 445 LIDGVN-LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEA-AN 501
+DG + + + +R K+G+V Q+ L ++ +N+ K + AEA
Sbjct: 60 TVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKL---SKAEAREK 116
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
A ++ + GL + QLSGGQ+QRVAIARA+ DP+++L DE TSALD E +
Sbjct: 117 ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPE---L 171
Query: 562 VQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
V E LD VM + T +IV+H + R A+ + + QGKI+E+G E +NP
Sbjct: 172 VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227
|
Length = 240 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 9e-42
Identities = 73/271 (26%), Positives = 137/271 (50%), Gaps = 2/271 (0%)
Query: 689 LLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPL 748
LL+ + + G +F ++L +++L + + A++ +A+G L
Sbjct: 1 LLIAILLLILAGATALVFPLLLGRFLDSLIDGNGDERSSLISLAILLIAVGVLQGLLLQG 60
Query: 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808
S Y G ++ KR+ +++ + + +FD +S G + +RL++D + +R +GD
Sbjct: 61 SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDT--NSVGELTSRLTNDVSKIRDGLGDK 118
Query: 809 LSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEE 868
L L Q+ AT V G ++ F W+L L++LAI PLL + + K ++ + + Y +
Sbjct: 119 LGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKAYAK 178
Query: 869 ASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMA 928
A VA +++S IRTV +F EE ++ Y K E KAGI++ + +G+ FG++ +++
Sbjct: 179 AGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLISYLS 238
Query: 929 YAVTFYVGAKLVDHKQATFTEVFRVFFALSM 959
YA+ + GA LV + VF
Sbjct: 239 YALALWFGAYLVISGGLSVGTVFAFLSLGLQ 269
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 149 bits (377), Expect = 4e-41
Identities = 63/219 (28%), Positives = 115/219 (52%), Gaps = 41/219 (18%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + +V+FSYP + ++Q+L L + G AL+G SGSGKST++ L+ PQ GE+
Sbjct: 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
+DGV + + + K + I +++Q P L +++R+N+
Sbjct: 60 TLDGVPVSDLE-KALSSLISVLNQRPYLFDTTLRNNL----------------------- 95
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
G + SGG++QR+A+AR +++D I+LLDE T LD + R +
Sbjct: 96 ----------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITERQLLS 139
Query: 565 ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603
+ V+ ++T + ++H L+ I + + I ++ GKI+ +G
Sbjct: 140 LIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 150 bits (382), Expect = 5e-41
Identities = 83/245 (33%), Positives = 130/245 (53%), Gaps = 30/245 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IEL+ + S+ R +L G L + G I A++G SGSGKST++ LI P +GEV
Sbjct: 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEV 57
Query: 445 LIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG---KTHATKEEIQAAA 497
LIDG + L E +L +R ++G++ Q L S ++ +N+A+ T ++EEI+
Sbjct: 58 LIDGEDISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIV 117
Query: 498 ----EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
EA P +LSGG K+RVA+ARA+ DP +LL DE T+
Sbjct: 118 LEKLEAVGLRGAEDLYP-----------AELSGGMKKRVALARALALDPELLLYDEPTAG 166
Query: 554 LDSESGRMVQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL- 609
LD + ++ + + + + T+++V+H L A+ IAV+ GKIV +GT EL
Sbjct: 167 LDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226
Query: 610 -ENPY 613
++P
Sbjct: 227 SDDPL 231
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 1e-40
Identities = 62/216 (28%), Positives = 105/216 (48%), Gaps = 44/216 (20%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+++V+F YP + +L I G A++G SGSGKST+ LI P +G V
Sbjct: 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRV 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
+DG ++ ++ + + +G + Q+ L S SI +NI
Sbjct: 60 RLDGADISQWDPNELGDHVGYLPQDDELFSGSIAENI----------------------- 96
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
LSGGQ+QR+ +ARA+ +PRIL+LDE S LD E R + +
Sbjct: 97 -------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGERALNQ 137
Query: 565 ALDRV-MINRTTVIVSHRLSLIRNANIIAVIQQGKI 599
A+ + T ++++HR + +A+ I V++ G++
Sbjct: 138 AIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 158 bits (402), Expect = 1e-40
Identities = 81/234 (34%), Positives = 128/234 (54%), Gaps = 2/234 (0%)
Query: 377 KLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
L + G + +++V P + L G + G A++G SGSGKST+ LI
Sbjct: 309 PLPEPEGHLSVENVTIV-PPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGI 367
Query: 437 YDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAA 496
+ P +G V +DG +LK++ + + IG + Q+ L ++ +NIA +A E+I A
Sbjct: 368 WPPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEA 427
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
A+ A I LP G DT +G G LSGGQ+QR+A+ARA+ DP++++LDE S LD
Sbjct: 428 AKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDE 487
Query: 557 ESGRMVQEALDRVMINR-TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609
E + + A+ + T V+++HR SL+ + I V+Q G+I G E+L
Sbjct: 488 EGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVL 541
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (379), Expect = 1e-40
Identities = 83/252 (32%), Positives = 137/252 (54%), Gaps = 17/252 (6%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+IE K+V++S ++IL + G I +VG SG+GKST+I LI R DP G
Sbjct: 3 EIEFKEVSYS---SFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGS 59
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
+LIDGV++K + +R KIG+V Q+P L +++DNI YG ++ + +
Sbjct: 60 ILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNV-------DVE 112
Query: 504 HFIKNLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
+++ + GL+ ++ LSGG+ QRV+IAR + +P +LLLDE TSALD S ++
Sbjct: 113 YYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEII 170
Query: 563 QEALDRVM--INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
+E + ++ +N T + ++H + R + A + +G +VE + NP +L
Sbjct: 171 EELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230
Query: 620 IRLQETCKESEK 631
+Q KE K
Sbjct: 231 F-IQGKLKEEVK 241
|
Length = 241 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 1e-40
Identities = 77/220 (35%), Positives = 111/220 (50%), Gaps = 48/220 (21%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ELK+V+ Y + +LN L I G I AL+G SGSGKST++ I +P +G +
Sbjct: 1 LELKNVSKRYG---QKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSI 57
Query: 445 LIDGVNL--KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAAN 501
LIDG +L E +L +R +IG+V Q+ L ++ +NIA G
Sbjct: 58 LIDGEDLTDLEDELPPLRRRIGMVFQDFALFPHLTVLENIALG----------------- 100
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
LSGGQ+QRVA+ARA+ DP +LLLDE TSALD + R
Sbjct: 101 ----------------------LSGGQQQRVALARALAMDPDVLLLDEPTSALDPITRRE 138
Query: 562 VQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGK 598
V+ L + + T V+V+H L A+ + V++ GK
Sbjct: 139 VRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 149 bits (378), Expect = 2e-40
Identities = 75/213 (35%), Positives = 110/213 (51%), Gaps = 25/213 (11%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKL 1080
+D+ L IP G+ AL+G SG GKST++ LL R D P G + LDG +I L
Sbjct: 13 KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDL 72
Query: 1081 Q--VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE--RGV--- 1133
V LR+++G+V Q+P F +I N+A +G L+E D V E R
Sbjct: 73 DVDVLELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHG--IKLKEELDERVEEALRKAALW 130
Query: 1134 ----------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
LSGGQ+QR+ +ARA+ EP++LLLDE TSALD S +++ + ++ +
Sbjct: 131 DEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKE 190
Query: 1184 RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
T ++V H + A A + G +VE G
Sbjct: 191 YTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 3e-40
Identities = 77/237 (32%), Positives = 119/237 (50%), Gaps = 34/237 (14%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKST---VISLIQRFYDPQ 440
IELK+V+ Y ++ + L L I G A+VG SGSGKST ++ + + P
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PT 58
Query: 441 AGEVLIDGVN---LKEFQLKWIR-EKIGLVSQEPVLLSS-SIRDNIAYG------KTHAT 489
+GEVLI+G + L E +L +R +KIG V Q LL ++ +N+
Sbjct: 59 SGEVLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRR 118
Query: 490 KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
K + E + +LSGGQ+QRVAIARA+I +P+I+L DE
Sbjct: 119 KRAAEELLEVLGLEDRLLKKKPS----------ELSGGQQQRVAIARALINNPKIILADE 168
Query: 550 ATSALDSESGRMVQEALDRVMINR----TTVIVSHRLSLIRNANIIAVIQQGKIVEK 602
T LDS++ + V E L +N+ T ++V+H L + A+ + ++ GKI E+
Sbjct: 169 PTGNLDSKTAKEVLELLRE--LNKERGKTIIMVTHDPELAKYADRVIELKDGKIEEE 223
|
Length = 226 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 147 bits (373), Expect = 6e-40
Identities = 78/226 (34%), Positives = 114/226 (50%), Gaps = 19/226 (8%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKST---VISLIQRFYDPQ 440
IELK+++ +Y ++ Q L G L I G A+VG SGSGKST ++ + R P
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PT 57
Query: 441 AGEVLIDGVNLKEF----QLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQA 495
+GEV +DG ++ + + R IG V Q LL + +N+ A + +
Sbjct: 58 SGEVRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKER 117
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A + L L+ +LSGGQ+QRVAIARA+ DP+I+L DE T LD
Sbjct: 118 RERAEELLERVG-LGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLD 172
Query: 556 SESGRMVQEALDRV--MINRTTVIVSHRLSLIRNANIIAVIQQGKI 599
SE+G+ V E L + T V+V+H L A+ I ++ GKI
Sbjct: 173 SETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 7e-40
Identities = 79/245 (32%), Positives = 139/245 (56%), Gaps = 25/245 (10%)
Query: 1009 GEVQFLRVSFKY-----PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
GE++ + +Y P H++ + I PG+ + + G +GSGKS++ R
Sbjct: 18 GEIKIHDLCVRYENNLKPVLKHVKAY------IKPGQKVGICGRTGSGKSSLSLAFFRMV 71
Query: 1064 DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AE 1109
D G I +DG++I KL + LR ++ ++ Q+P+LFS +IR N+ E
Sbjct: 72 DIFDGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALE 131
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+A + L G D +V E G S GQ+Q +ARA V++ IL++DEAT+++D+ +
Sbjct: 132 IAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMAT 191
Query: 1170 ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
E ++Q + DRT + +AHR+STI +A L+ V+S+G++VE + E+L++ ++G++ S
Sbjct: 192 ENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFAS 251
Query: 1230 LIEPH 1234
L+
Sbjct: 252 LVRTD 256
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 155 bits (394), Expect = 9e-40
Identities = 108/439 (24%), Positives = 192/439 (43%), Gaps = 47/439 (10%)
Query: 786 STGAIGARLSSD-----AALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAI 840
G + RL +D VR +V ++L+V A A + ++ AL++ A
Sbjct: 108 RRGDLLGRLGADVDALQDLYVRVIVPAGVALVVGAAAVAAIAVLS-----VPAALILAAG 162
Query: 841 FPLLGITGHIQMKSMKGFSANAENMYEEA-----SQVASDAVSSIRTVAS---FCAEEKV 892
L G S A E+A ++A+ ++ A A
Sbjct: 163 LLLAGFV-------APLVSLRAARAAEQALARLRGELAAQLTDALDGAAELVASGALPAA 215
Query: 893 MKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLV-DHKQA-TFTEV 950
+ ++ +A R + +G L+ +A + G V D + A V
Sbjct: 216 LAQVEEADRELTRAERRAAAATALGAALTLLAAGLAVLGALWAGGPAVADGRLAPVTLAV 275
Query: 951 FRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQ-VSKIDSSEYTGRTLENVMG 1009
V L+ + ++ ++ +++A + ++D + S +
Sbjct: 276 L-VLLPLAAFEAFAALPAAAQQ-LTRVRAAAERIVEVLDAAGPVAEGSAPAAGAVGLGKP 333
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ +S YP P V + L +PPG+ +A++G SGSGKST+++ L DP G
Sbjct: 334 TLELRDLSAGYPGAP--PVLDGVSLDLPPGERVAILGPSGSGKSTLLATLAGLLDPLQGE 391
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------AEMANA------N 1114
+TLDGV + L +R+++ V +Q+ LF T+R N+ E+ A
Sbjct: 392 VTLDGVPVSSLDQDEVRRRVSVCAQDAHLFDTTVRENLRLARPDATDEELWAALERVGLA 451
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
++ L +G DT++GE G +LSGG++QR+A+ARA++ + ILLLDE T LD E+ +
Sbjct: 452 DWLRALPDGLDTVLGEGGARLSGGERQRLALARALLADAPILLLDEPTEHLDAETADELL 511
Query: 1175 DALDQVMVDRTTLVVAHRL 1193
+ L + RT +++ H L
Sbjct: 512 EDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (375), Expect = 9e-40
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+++++F Y +P IL+ IP G I ++G +GSGKST++ + P++GEV
Sbjct: 3 LEVENLSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEV 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT-HAT---------KEEI 493
L+DG ++ K + +K+ V Q P ++ + + G+ H +E +
Sbjct: 60 LLDGKDIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIV 119
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+ A E H D V E LSGG++QRV IARA+ ++ ILLLDE TS
Sbjct: 120 EEALELLGLEHLA-------DRPVDE----LSGGERQRVLIARALAQETPILLLDEPTSH 168
Query: 554 LDSESGRMVQEALDRVMI--NRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTHSELL 609
LD V E L + T V+V H L+L R A+ + +++ GKIV +GT E+L
Sbjct: 169 LDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227
|
Length = 258 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 147 bits (374), Expect = 9e-40
Identities = 83/249 (33%), Positives = 130/249 (52%), Gaps = 24/249 (9%)
Query: 378 LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437
IE++D+N Y D+ L L IP + AL+G SG GKST++ + R
Sbjct: 1 ETMKIPAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMN 57
Query: 438 DP-----QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHAT 489
D GEVL+DG N+ + + +R ++G+V Q+P SI DN+AYG + H
Sbjct: 58 DLIPGARVEGEVLLDGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGI 117
Query: 490 KE-EIQAAAEAA--NASHF--IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544
K+ E+ E++ A+ + +K+ L + + LSGGQ+QR+ IARA+ P +
Sbjct: 118 KDKELDEIVESSLKKAALWDEVKDR---LHKS----ALGLSGGQQQRLCIARALAVKPEV 170
Query: 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKG 603
LL+DE TSALD S ++E + + T VIV+H + R ++ A G++VE G
Sbjct: 171 LLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFG 230
Query: 604 THSELLENP 612
++ NP
Sbjct: 231 PTDKIFTNP 239
|
Length = 253 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-39
Identities = 76/237 (32%), Positives = 119/237 (50%), Gaps = 28/237 (11%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+E+K+++ S+P + L+ I G LVG SGSGKST+ I P +G
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 444 VLIDG---VNLKEFQLKWIREKIGLVSQEPVLLSS-----SIRDNIA---YGKTHATKEE 492
++ DG + L K R++I +V Q+P +SS +I + IA +K+E
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDP--MSSLNPRMTIGEQIAEPLRIHGKLSKKE 119
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGE---HGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ A GL V H +LSGGQ+QRVAIARA+ +P++L+ DE
Sbjct: 120 ARKEAVLLLLVGV------GLPEEVLNRYPH--ELSGGQRQRVAIARALALNPKLLIADE 171
Query: 550 ATSALDSESGRMVQEALD--RVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
TSALD + + L + + T + ++H L ++ A+ +AV+ GKIVE+G
Sbjct: 172 PTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 2e-39
Identities = 76/229 (33%), Positives = 120/229 (52%), Gaps = 26/229 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ELK ++ +Y + L+ L + G AL+G SG GK+T++ LI P +GE+
Sbjct: 1 LELKGLSKTYG---SVRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHAT--KEEIQA----AA 497
LIDG ++ + R IG+V Q+ L ++ +NIA+G K EI+A
Sbjct: 58 LIDGRDV--TGVPPERRNIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL 115
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E + P +LSGGQ+QRVA+ARA+ ++P +LLLDE SALD++
Sbjct: 116 ELVGLEGLLNRYPH-----------ELSGGQQQRVALARALAREPSLLLLDEPLSALDAK 164
Query: 558 SGRMVQEALDRVMINR--TTVIVSHRLS-LIRNANIIAVIQQGKIVEKG 603
++E L + TT+ V+H + A+ IAV+ +G+IV+ G
Sbjct: 165 LREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 149 bits (380), Expect = 2e-39
Identities = 94/248 (37%), Positives = 136/248 (54%), Gaps = 37/248 (14%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
IELK+++ +P LN L IP G I ++G SG+GKST+I I P +G
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 444 VLIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHA--TKEEIQAAA 497
VL+DG + L E +L+ R +IG++ Q LLSS ++ DN+A A K EI+A
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 498 E--------AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ A + P QLSGGQKQRVAIARA+ +P++LL DE
Sbjct: 122 TELLELVGLSDKADRY----PA-----------QLSGGQKQRVAIARALASNPKVLLCDE 166
Query: 550 ATSALDSESGRMVQEALDRVMINR----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604
ATSALD + R + E L INR T V+++H + +++ + +AVI G++VE+GT
Sbjct: 167 ATSALDPATTRSILELLKD--INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
Query: 605 HSELLENP 612
SE+ +P
Sbjct: 225 VSEVFSHP 232
|
Length = 343 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 154 bits (391), Expect = 4e-39
Identities = 83/240 (34%), Positives = 128/240 (53%), Gaps = 10/240 (4%)
Query: 377 KLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
L +G + ++ + + P + + IL G + G ++G SGSGKST+ L+
Sbjct: 327 PLPAPQGALSVERLTAAPPGQK-KPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGI 385
Query: 437 YDPQAGEVLIDGVNLKEFQLKWIREK----IGLVSQEPVLLSSSIRDNIAYGKTHATKEE 492
+ P +G V +DG +L++ W RE+ IG + Q+ L +I +NIA A E+
Sbjct: 386 WPPTSGSVRLDGADLRQ----WDREQLGRHIGYLPQDVELFDGTIAENIARFGEEADPEK 441
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ AA A I LPQG DT +GE G LSGGQ+QR+A+ARA+ DP +++LDE S
Sbjct: 442 VIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501
Query: 553 ALDSESGRMVQEALDRVMIN-RTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
LDSE + A+ T V+++HR S + + + I V+Q G+I G E+L
Sbjct: 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561
|
Length = 580 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 148 bits (376), Expect = 5e-39
Identities = 78/228 (34%), Positives = 123/228 (53%), Gaps = 27/228 (11%)
Query: 1011 VQFLRVSFKYPTRPH--IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++ VS + + D+ L IP G+ ++G SG+GKST++ L+ P+SG
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSG 61
Query: 1069 HITLDGVEIQKLQVKWL---RQQMGVVSQEPVLFSD-TIRANIA---EMAN-----ANGF 1116
+ +DG ++ L L RQ++G++ Q L S T+ N+A E+A
Sbjct: 62 SVFVDGQDLTALSEAELRQLRQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQR 121
Query: 1117 ISGLQEGYDTLVG--ERG----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
++ L E LVG ++ QLSGGQKQRVAIARA+ PKILL DEATSALD E+
Sbjct: 122 VAELLE----LVGLSDKADRYPAQLSGGQKQRVAIARALANNPKILLCDEATSALDPETT 177
Query: 1171 RVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + + L + + T +++ H + +K +AV+ QG +VE+G+
Sbjct: 178 QSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225
|
Length = 339 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 158 bits (400), Expect = 6e-39
Identities = 117/425 (27%), Positives = 220/425 (51%), Gaps = 44/425 (10%)
Query: 703 IPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIK 762
+ +FGV++ M L E +++ V +G + S +S +C V K++K
Sbjct: 80 VSVFGVIMKNM--NLGENVNDII-------FSLVLIGIFQFILSFISSFCMDVVTTKILK 130
Query: 763 RIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAAL----VRSLVGDTLSLLVQNTAT 818
++ + F K V+ + G F + + G++L+SD V + +G T + + A+
Sbjct: 131 TLK-LEFLKSVFYQDGQFHDNNP-----GSKLTSDLDFYLEQVNAGIG-TKFITIFTYAS 183
Query: 819 AVVGLVI--AFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEAS-QVASD 875
A +GL I FK +L L + +FPL+ I G I K +K + +Y + + +
Sbjct: 184 AFLGLYIWSLFKNA-RLTLCITCVFPLIYICGVICNKKVK-INKKTSLLYNNNTMSIIEE 241
Query: 876 AVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYV 935
A+ IRTV S+C E+ ++K + + K ++ M + G+ F +YA F+
Sbjct: 242 ALVGIRTVVSYCGEKTILKKFNLSEKLYSKYILKANFMESLHIGMINGFILASYAFGFWY 301
Query: 936 GAKLVD------------HKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAAS 983
G +++ H + + + V ++ M I + + + K+ + S
Sbjct: 302 GTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNIT----EYMKSLEATNS 357
Query: 984 VFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIA 1043
++ +I++ +++++ G+ L+++ ++QF V F Y TR +E+++DL T+ GKT A
Sbjct: 358 LYEIINRKPLVENND-DGKKLKDIK-KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYA 415
Query: 1044 LVGESGSGKSTVISLLQRFYDPSSGHITL-DGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102
VGESG GKST++ L++R YDP+ G I + D ++ + +KW R ++GVVSQ+P+LFS++
Sbjct: 416 FVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNS 475
Query: 1103 IRANI 1107
I+ NI
Sbjct: 476 IKNNI 480
|
Length = 1466 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 145 bits (369), Expect = 1e-38
Identities = 73/248 (29%), Positives = 120/248 (48%), Gaps = 24/248 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++++ Y D+ L+G + G I L+G +G+GK+T++ ++ P +GE+
Sbjct: 5 IEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEI 62
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNI-----AYGKTHATKEE-IQAAA 497
L+ G ++ + K +R +IG V QEP L ++R+N+ YG + EE I+
Sbjct: 63 LVLGYDVVKEPAK-VRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELL 121
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E + L SGG KQR++IA A++ DP +L+LDE TS LD E
Sbjct: 122 ELFGLEDKANKKVRTL-----------SGGMKQRLSIALALLHDPELLILDEPTSGLDPE 170
Query: 558 SGRMVQEALD--RVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPYG 614
S R + E L T ++ +H L + + ++ GKI+ +GT EL E G
Sbjct: 171 SRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGG 230
Query: 615 AYNRLIRL 622
+
Sbjct: 231 KGVIELEP 238
|
Length = 293 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 3e-38
Identities = 74/233 (31%), Positives = 123/233 (52%), Gaps = 26/233 (11%)
Query: 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ VS + + +D+ L++P G+ ++G SG+GKST+I + P+SG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGS 61
Query: 1070 ITLDGVEIQKLQVKWL---RQQMGVVSQEPVLFSD-TIRANIA--------EMANANGFI 1117
+ +DG ++ L K L R+++G++ Q L S T+ N+A A +
Sbjct: 62 VLVDGTDLTLLSGKELRKARRRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERV 121
Query: 1118 SGLQEGYDTLVG--ERG----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
L E LVG ++ QLSGGQKQRV IARA+ PK+LL DEATSALD E+ +
Sbjct: 122 LELLE----LVGLEDKADAYPAQLSGGQKQRVGIARALANNPKVLLCDEATSALDPETTQ 177
Query: 1172 VVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
+ L + + T +++ H + +K +AV+ +G +VE+G+ E + +
Sbjct: 178 SILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-38
Identities = 74/221 (33%), Positives = 120/221 (54%), Gaps = 24/221 (10%)
Query: 385 IELKDVNFSYPARPDEQ--ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I ++D +F++ + E L L +P G + A+VG GSGKS+++S + + +G
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
V + G I VSQEP + + +IR+NI +GK +E + +A
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENILFGKPF-DEERYEKVIKACAL 106
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM- 561
++ LP G T +GE GI LSGGQKQR+++ARA+ D I LLD+ SA+D+ GR
Sbjct: 107 EPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDAHVGRHI 166
Query: 562 ----VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598
+ L + N+T ++V+H+L L+ +A+ I V+ G+
Sbjct: 167 FENCILGLL---LNNKTRILVTHQLQLLPHADQIVVLDNGR 204
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 4e-38
Identities = 79/240 (32%), Positives = 122/240 (50%), Gaps = 25/240 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE ++++F YP + L L I G L+G +GSGKST++ L+ P +GEV
Sbjct: 4 IEAENLSFRYP--GRKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEV 61
Query: 445 LIDGVNLKEFQLKW-IREKIGLVSQEPV--LLSSSIRDNIAYGKTH--ATKEEIQAAAEA 499
L+DG++ + +R+K+GLV Q P L ++ D +A+G + +EEI+
Sbjct: 62 LVDGLDTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAE 121
Query: 500 A----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A + P LSGGQKQRVAIA + P ILLLDE T+ LD
Sbjct: 122 ALELVGLEELLDRPPF-----------NLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLD 170
Query: 556 SESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ R + E L ++ +T +IV+H L L+ A+ + V+ GKI+ G +E+ +
Sbjct: 171 PKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFNDA 230
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 141 bits (359), Expect = 5e-38
Identities = 82/230 (35%), Positives = 118/230 (51%), Gaps = 29/230 (12%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
EV+ L VSF + D+ +I G+T+ LVGESGSGKST+ + P+SG
Sbjct: 3 EVKNLSVSFPTGGGSV-KALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGS 61
Query: 1070 ITLDGVEIQKL---QVKWLRQQMGVVSQE------PVLFSDTIRANIAEMANANGFISGL 1120
I DG ++ KL K R+++ +V Q+ P + TI IAE +G +S
Sbjct: 62 IIFDGKDLLKLSRRLRKIRRKEIQMVFQDPMSSLNPRM---TIGEQIAEPLRIHGKLSKK 118
Query: 1121 QEGYDT-LVGERGV------------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+ + L+ GV +LSGGQ+QRVAIARA+ PK+L+ DE TSALD+
Sbjct: 119 EARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEPTSALDV 178
Query: 1168 ESERVVQDALD--QVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
+ + D L Q + T L + H L + A +AV+ G IVE+G
Sbjct: 179 SVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 7e-38
Identities = 66/193 (34%), Positives = 99/193 (51%), Gaps = 30/193 (15%)
Query: 1022 TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL- 1080
V D+ L I G+ +AL+G SGSGKST++ + +P SG I +DG ++ L
Sbjct: 9 RYGQKTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLE 68
Query: 1081 -QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGG 1138
++ LR+++G+V Q+ LF T+ NIA LSGG
Sbjct: 69 DELPPLRRRIGMVFQDFALFPHLTVLENIAL------------------------GLSGG 104
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV--MVDRTTLVVAHRLS-T 1195
Q+QRVA+ARA+ +P +LLLDE TSALD + R V+ L + + T ++V H L
Sbjct: 105 QQQRVALARALAMDPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEA 164
Query: 1196 IKNAHLIAVVSQG 1208
+ A + V+ G
Sbjct: 165 ARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 143 bits (364), Expect = 8e-38
Identities = 79/240 (32%), Positives = 125/240 (52%), Gaps = 26/240 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE ++V+ Y + ++ L I G L+G SGSGK+T + +I R +P +GE+
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAAAEAA- 500
LIDG ++ + +R KIG V Q+ L ++ +NIA KE I+ A+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 501 -----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
+ S + P +LSGGQ+QRV +ARA+ DP ILL+DE ALD
Sbjct: 119 DLVGLDPSEYADRYPH-----------ELSGGQQQRVGVARALAADPPILLMDEPFGALD 167
Query: 556 SESGRMVQEALDRVM--INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ + +QE + + + +T V V+H + ++ A+ IAV+ G+IV+ T E+L NP
Sbjct: 168 PITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227
|
Length = 309 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 1e-37
Identities = 81/221 (36%), Positives = 120/221 (54%), Gaps = 31/221 (14%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE----KIGLVSQ 468
G I ++G SGSGKST++ I R +P +G+VLIDG ++ K +RE KI +V Q
Sbjct: 50 GEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKKISMVFQ 109
Query: 469 EPVLLSS-SIRDNIAYG---KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI-- 522
LL ++ +N+A+G + E + AAEA VG G
Sbjct: 110 SFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALEL--------------VGLEGWEH 155
Query: 523 ----QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTV 576
+LSGG +QRV +ARA+ DP ILL+DEA SALD R +Q+ L R+ + +T V
Sbjct: 156 KYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIV 215
Query: 577 IVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
++H L +R + IA+++ G++V+ GT E+L NP Y
Sbjct: 216 FITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDY 256
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 1e-37
Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 21/241 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IE++++N Y +++ L L IP + AL+G SG GKST++ + R D
Sbjct: 2 IEIENLNLFYG---EKEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVR 58
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHA--TKEEIQ 494
G+VL DG ++ K+ + +R ++G+V Q+P SI DNIAYG + H K+E+
Sbjct: 59 IEGKVLFDGQDIYDKKIDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELD 118
Query: 495 AAAEAA--NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
E + A+ L + + + + LSGGQ+QR+ IARA+ +P +LLLDE TS
Sbjct: 119 EIVEESLKKAA-----LWDEVKDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTS 173
Query: 553 ALDSESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLEN 611
ALD + ++E + + T VIV+H + R ++ A G++VE G ++ N
Sbjct: 174 ALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
Query: 612 P 612
P
Sbjct: 234 P 234
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 139 bits (353), Expect = 2e-37
Identities = 67/224 (29%), Positives = 121/224 (54%), Gaps = 24/224 (10%)
Query: 383 GDIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
G+IE+++++ Y PD +L + G +VG +G+GKST+I + RF + +
Sbjct: 5 GEIEVENLSVRY--APDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEE 62
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI-AYGKTHATKEEIQAAAEAA 500
G++ IDG+++ L+ +R + ++ Q+P L S +IR N+ + + EEI A
Sbjct: 63 GKIEIDGIDISTIPLEDLRSSLTIIPQDPTLFSGTIRSNLDPFD--EYSDEEIYGALR-- 118
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
V E G+ LS GQ+Q + +ARA++K PR+L+LDEAT+++D +
Sbjct: 119 ----------------VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDYATDA 162
Query: 561 MVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604
++Q+ + N T + ++HRL I + + I V+ G++ E
Sbjct: 163 LIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDH 206
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (356), Expect = 2e-37
Identities = 83/235 (35%), Positives = 125/235 (53%), Gaps = 18/235 (7%)
Query: 1016 VSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
+S Y ++ L I G+T+ +VGESGSGKST+ LL PSSG I LDG
Sbjct: 9 LSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDG 68
Query: 1075 VEIQKLQ-VKWLRQQMGVVSQEPVLF---SDTIRANIAEMANANGFISGLQEGYDTL--V 1128
+ + K + + +V Q+P T+ ++E +G Q + L V
Sbjct: 69 KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQV 128
Query: 1129 G-------ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
G R +LSGGQ+QR+AIARA++ EPK+L+LDE TSALD+ + + + L ++
Sbjct: 129 GLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLLILDEPTSALDVSVQAQILNLLLELK 188
Query: 1182 VDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT-SLIE 1232
+R T L ++H L+ +++ IAV+ G IVE G E L+S + YT L+E
Sbjct: 189 KERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTRELLE 243
|
Length = 252 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 4e-37
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 31/219 (14%)
Query: 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
+ +SF YP D+ LTI G+ + +VG +GSGKST++ LL P+SG +
Sbjct: 1 ELKNLSFSYPDGAR-PALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVL 59
Query: 1072 LDGVEIQKLQVKWLRQQMGVVSQEP------------VLFS--------DTIRANIAEMA 1111
+DG ++ KL +K LR+++G+V Q P V F + I + E
Sbjct: 60 VDGKDLTKLSLKELRRKVGLVFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEAL 119
Query: 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
G + GL++ LSGGQKQRVAIA + +P ILLLDE T+ LD R
Sbjct: 120 ELVG-LEGLRD-RSPF------TLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 1172 VVQDALDQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQG 1208
+ + L ++ + T+++ H L + A + V+ G
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 5e-37
Identities = 62/196 (31%), Positives = 96/196 (48%), Gaps = 45/196 (22%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
+SF+Y R ++ LT+ G+ +ALVG +GSGKST++ + P+SG I +DG
Sbjct: 4 NLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDG 60
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
+I KL ++ LR+++G V Q
Sbjct: 61 KDIAKLPLEELRRRIGYVPQ---------------------------------------- 80
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRL 1193
LSGGQ+QRVA+ARA++ P +LLLDE TS LD S + + L ++ + RT ++V H
Sbjct: 81 LSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDP 140
Query: 1194 STIKNA-HLIAVVSQG 1208
+ A + V+ G
Sbjct: 141 ELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 8e-37
Identities = 77/242 (31%), Positives = 126/242 (52%), Gaps = 33/242 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+++V+ S+ D ++ L I G L+G SG GK+T++ +I F P +GE+
Sbjct: 6 LEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEI 62
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTH---ATKEEIQAAAEAA 500
L+DG ++ + + IG+V Q L ++ +N+A+G K EI+A E A
Sbjct: 63 LLDGEDI--TDVPPEKRPIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEA 120
Query: 501 ----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
F P QLSGGQ+QRVA+ARA++ +P++LLLDE SALD+
Sbjct: 121 LELVGLEGFADRKPH-----------QLSGGQQQRVALARALVPEPKVLLLDEPLSALDA 169
Query: 557 ESGRMVQEALDRVMINR--TTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
+ +++ L + T V V+H L++ ++ IAV+ G+I + GT E+ E
Sbjct: 170 KLREQMRKELKELQRELGITFVYVTHDQEEALAM---SDRIAVMNDGRIEQVGTPEEIYE 226
Query: 611 NP 612
P
Sbjct: 227 RP 228
|
Length = 352 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 8e-37
Identities = 68/206 (33%), Positives = 99/206 (48%), Gaps = 26/206 (12%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+E+++V+ +Y L L + G ALVG SG GKST++ +I P +GE
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYG---KTHATKEEIQAAAEA 499
VL+DG + G V Q+ LL ++ DN+A G + E + A E
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 500 ANA---SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
S F P QLSGG +QRVA+ARA+ DP +LLLDE SALD+
Sbjct: 116 LELVGLSGFENAYPH-----------QLSGGMRQRVALARALAVDPDVLLLDEPFSALDA 164
Query: 557 ESGRMVQEALDRVM--INRTTVIVSH 580
+ +QE L + +T ++V+H
Sbjct: 165 LTREQLQEELLDIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 138 bits (351), Expect = 1e-36
Identities = 72/227 (31%), Positives = 117/227 (51%), Gaps = 21/227 (9%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+SF Y +P + DL +IP G+ ++G +GSGKST++ L P SG + LDG
Sbjct: 8 LSFGYGGKP---ILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGK 64
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM---ANANGFISGLQEGYD------T 1126
+I L K L +++ V Q P + + + F +E +
Sbjct: 65 DIASLSPKELAKKLAYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALE 124
Query: 1127 LVG-----ERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
L+G +R V +LSGG++QRV IARA+ +E ILLLDE TS LDI + V + L +
Sbjct: 125 LLGLEHLADRPVDELSGGERQRVLIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDL 184
Query: 1181 MVDR--TTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
++ T ++V H L+ + A + ++ G IV +G+ E +++ +N
Sbjct: 185 NREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTEEN 231
|
Length = 258 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 137 bits (348), Expect = 2e-36
Identities = 76/232 (32%), Positives = 120/232 (51%), Gaps = 9/232 (3%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE ++V Y + +N L I G L+G SGSGK+T + +I R +P +GE+
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANAS 503
IDG +++E +R KIG V Q+ L ++ +NIA + + A
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+ P + +LSGGQ+QRV +ARA+ DP +LL+DE ALD + +Q
Sbjct: 119 ALVGLDPAEF---ADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALDPITRDQLQ 175
Query: 564 EALDRV--MINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
E R+ + +T V V+H + R A+ IA+++ G+IV+ GT E+L +P
Sbjct: 176 EEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRSP 227
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 150 bits (379), Expect = 2e-36
Identities = 80/237 (33%), Positives = 139/237 (58%), Gaps = 18/237 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
G V+F +Y R ++ V R + +TI G+ + +VG +G+GKS++ L R + +
Sbjct: 1283 GRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AEMANA 1113
G I +DG+ I K+ + LR ++ ++ Q+PVLFS ++R N+ E+A+
Sbjct: 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHL 1400
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
F+S L + D E G LS GQ+Q V +ARA++++ KIL+LDEAT+A+D+E++ ++
Sbjct: 1401 KTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLI 1460
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
Q + D T L +AHRL+TI + + V+ +G + E G+ +L+ + GI+ S+
Sbjct: 1461 QSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQQR-GIFYSM 1516
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 3e-36
Identities = 75/228 (32%), Positives = 121/228 (53%), Gaps = 28/228 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+K+++ S+ D +L G L + G + ++G SGSGKST++ I +P +G +
Sbjct: 1 IEIKNLHKSFG---DFHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTI 57
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAE 498
+IDG + + + +R+K+G+V Q+ L ++ +NI +K E + A
Sbjct: 58 IIDGLKLTDDKKNINELRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERAL 117
Query: 499 AANASHFIKNLPQ-GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
L + GL + QLSGGQ+QRVAIARA+ +P+++L DE TSALD E
Sbjct: 118 EL--------LEKVGLADKADAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE 169
Query: 558 SGRMVQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKI 599
+V E LD VM + T V+V+H + R A+ + + G+I
Sbjct: 170 ---LVGEVLD-VMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 137 bits (347), Expect = 5e-36
Identities = 84/245 (34%), Positives = 130/245 (53%), Gaps = 33/245 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++ V S+ R IL+G L +P G I A++G SGSGKST++ LI P GE+
Sbjct: 9 IEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 445 LIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG---KTHATKEEIQA-A 496
LIDG + L E +L IR+++G++ Q+ L SS ++ +N+A+ T + I+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 497 AEAANASHFIKNLPQGLDTNVGE-HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
GL + + +LSGG ++RVA+ARA+ DP +L LDE TS LD
Sbjct: 126 LMKLELV--------GLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSGLD 177
Query: 556 SESG-------RMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
S R + +AL T ++V+H L + A+ +AV+ GK++ +GT E
Sbjct: 178 PISAGVIDELIRELNDALG-----LTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232
Query: 608 LLENP 612
LL +
Sbjct: 233 LLASD 237
|
Length = 263 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 147 bits (372), Expect = 2e-35
Identities = 132/528 (25%), Positives = 241/528 (45%), Gaps = 28/528 (5%)
Query: 110 FVYLALGAG-VASFFQVACWMITGERQAA-RIRSFYLETILRQDIAFFDKEINTGEVVGR 167
VY LG G VA F + W+I+ AA R+ L +ILR + FF TG V+ R
Sbjct: 954 VVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINR 1012
Query: 168 ISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIK 227
S D I + + F+ + F + G + T++ L +I PL+I
Sbjct: 1013 FSKDIGDIDRNVANLMNMFMNQLWQLLSTFALI---GTVSTIS-LWAIMPLLILFYAAYL 1068
Query: 228 LVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLA 287
+ + + + DS+ + + G S +A K KS ++++ LA
Sbjct: 1069 YYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLA 1128
Query: 288 TGLGLGASVFIIFSAYGLGVWYGAKL-ILEKGYSGGDV-MSVIFGVLIG---------SM 336
+ + G+ +W A +L G + + G+L+ S
Sbjct: 1129 NTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSG 1188
Query: 337 SLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDD--IRGDIELKDVNFSY 394
L QAS ++ + + + + + I N + + RG I+ +DV+ Y
Sbjct: 1189 VLRQASKAENSLNSVERVG-NYIDLPSEATAII---ENNRPVSGWPSRGSIKFEDVHLRY 1244
Query: 395 -PARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453
P P +L+G + +VG +G+GKS++++ + R + + G ++ID ++ +
Sbjct: 1245 RPGLP--PVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302
Query: 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL 513
F L +R + ++ Q PVL S ++R NI H ++ A E A+ I P GL
Sbjct: 1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEH-NDADLWEALERAHIKDVIDRNPFGL 1361
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR 573
D V E G S GQ+Q +++ARA+++ +IL+LDEAT+++D + ++Q + +
Sbjct: 1362 DAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSC 1421
Query: 574 TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
T ++++HRL+ I + + I V+ G+++E + ELL A+ R++
Sbjct: 1422 TMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVH 1469
|
Length = 1495 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 2e-35
Identities = 75/257 (29%), Positives = 131/257 (50%), Gaps = 33/257 (12%)
Query: 385 IELKDVNFSYPARPDEQI--------LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
+ +++++ Y +R + ++ + G LVG SGSGKST+ ++
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGL 340
Query: 437 YDPQAGEVLIDG--VNLKEFQLKWIREKIGLVSQEPVLLSS-----SIRDNIAYGKTHAT 489
P +G ++ DG ++L +L+ +R +I +V Q+P SS ++ D +A
Sbjct: 341 LPPSSGSIIFDGQDLDLTGGELRRLRRRIQMVFQDPY--SSLNPRMTVGDILA------- 391
Query: 490 KEEIQAAAEAANA--SHFIKNLPQ--GLDTNVGE-HGIQLSGGQKQRVAIARAMIKDPRI 544
E ++ + A + L + GL + + +LSGGQ+QRVAIARA+ +P++
Sbjct: 392 -EPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELSGGQRQRVAIARALALEPKL 450
Query: 545 LLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVE 601
L+LDE SALD V L + + T + +SH L+++R A+ +AV+ G+IVE
Sbjct: 451 LILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVE 510
Query: 602 KGTHSELLENPYGAYNR 618
+G ++ ENP Y R
Sbjct: 511 EGPTEKVFENPQHPYTR 527
|
Length = 539 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 3e-35
Identities = 72/227 (31%), Positives = 116/227 (51%), Gaps = 21/227 (9%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
++ + R V + + L + G+ +A++G SGSGKST++ L+ P SG + +DG
Sbjct: 6 LTKSFGGRT---VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGE 62
Query: 1076 EIQKLQVKWL---RQQMGVVSQEPVLFSD-TIRANIAEMANANG-----FISGLQEGYDT 1126
+I L L R++MG++ Q LF T+ N+A + I +
Sbjct: 63 DISGLSEAELYRLRRRMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLE 122
Query: 1127 LVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALD-IESERVVQDALD- 1178
VG RG +LSGG K+RVA+ARA+ +P++LL DE T+ LD I S +
Sbjct: 123 AVGLRGAEDLYPAELSGGMKKRVALARALALDPELLLYDEPTAGLDPIASGVIDDLIRSL 182
Query: 1179 QVMVDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
+ + T+++V H L T A IAV+ G IV +G+ E L ++ +
Sbjct: 183 KKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRASDD 229
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 4e-35
Identities = 79/229 (34%), Positives = 123/229 (53%), Gaps = 23/229 (10%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVK 1083
++ D+ + G+T+ LVGESGSGKST+ +L PSSG I DG ++ +++
Sbjct: 304 VKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLTGGELR 363
Query: 1084 WLRQQMGVVSQEPVLFSD---TIRANIAEMANANGFISG------LQEGYDTLVG-ERGV 1133
LR+++ +V Q+P + T+ +AE +G SG + E + LVG
Sbjct: 364 RLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLE-LVGLPPEF 422
Query: 1134 ------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--T 1185
+LSGGQ+QRVAIARA+ EPK+L+LDE SALD+ + V + L + + T
Sbjct: 423 LDRYPHELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLT 482
Query: 1186 TLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT-SLIE 1232
L ++H L+ ++ A +AV+ G IVE+G E + YT L+
Sbjct: 483 YLFISHDLAVVRYIADRVAVMYDGRIVEEGPTEKVFENPQHPYTRKLLA 531
|
Length = 539 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 5e-35
Identities = 79/256 (30%), Positives = 126/256 (49%), Gaps = 36/256 (14%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ +++++ Y LN L I G +VG SGSGKST+ L+ P +G
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGS 63
Query: 444 VLIDGVNLKEFQ-LKWIREKIGLVSQEPVLLSS-----SIRDNIAYG-KTHATKEEIQAA 496
+L+DG L + K + +V Q+P SS ++ ++ + H + Q
Sbjct: 64 ILLDGKPLAPKKRAKAFYRPVQMVFQDP--YSSLNPRRTVGRILSEPLRPHGLSKSQQRI 121
Query: 497 AEAANA----SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
AE + F+ P +LSGGQ+QR+AIARA+I +P++L+LDE TS
Sbjct: 122 AELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIAIARALIPEPKLLILDEPTS 170
Query: 553 ALDSESGRMVQ-EALDRVMINR-----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH 605
ALD VQ + L+ ++ + T + +SH L+L+ + + IAV+ G+IVE G
Sbjct: 171 ALDV----SVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPT 226
Query: 606 SELLENPYGAYNRLIR 621
ELL +P Y R +
Sbjct: 227 EELLSHPSHPYTRELL 242
|
Length = 252 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 5e-35
Identities = 82/259 (31%), Positives = 134/259 (51%), Gaps = 44/259 (16%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+K+++ +YP Q L L I G + A++G SG+GKST++ + DP +GE+
Sbjct: 4 IEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEI 61
Query: 445 LIDGV---NLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGK--THAT--------- 489
L +GV LK +L+ +R IG++ Q+ L+ S+ +N+ G+ +T
Sbjct: 62 LFNGVQITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFS 121
Query: 490 KEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQ----LSGGQKQRVAIARAMIKDPRI 544
KE+ A +A L+ + + Q LSGGQ+QRVAIARA+++ P+I
Sbjct: 122 KEDKAQALDA-------------LERVGILDKAYQRASTLSGGQQQRVAIARALVQQPKI 168
Query: 545 LLLDEATSALDSESGRMVQEALDRVMINR--TTVIVSHRLSLIRN--ANIIAVIQQGKIV 600
+L DE ++LD ES + V + L + T ++ H++ L + II ++ G+IV
Sbjct: 169 ILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIG-LKAGRIV 227
Query: 601 EKGTHSEL----LENPYGA 615
G SEL L+ YG
Sbjct: 228 FDGPASELTDEALDEIYGN 246
|
Length = 258 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 7e-35
Identities = 67/207 (32%), Positives = 103/207 (49%), Gaps = 39/207 (18%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+S Y R V DL L+I G+ + ++G +G+GKST++ L PSSG I LDG
Sbjct: 5 LSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGK 61
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGV-Q 1134
++ L K L +++ V Q L +A +A +R +
Sbjct: 62 DLASLSPKELARKIAYVPQ--AL----ELLGLAHLA------------------DRPFNE 97
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD------RTTLV 1188
LSGG++QRV +ARA+ +EP ILLLDE TS LDI Q L +++ +T ++
Sbjct: 98 LSGGERQRVLLARALAQEPPILLLDEPTSHLDIAH----QIELLELLRRLARERGKTVVM 153
Query: 1189 VAHRLS-TIKNAHLIAVVSQGMIVEKG 1214
V H L+ + A + ++ G IV +G
Sbjct: 154 VLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 133 bits (336), Expect = 8e-35
Identities = 88/244 (36%), Positives = 133/244 (54%), Gaps = 32/244 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+++++ +YP ++ L L I G AL+G SG+GKST++ + +P +G V
Sbjct: 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSV 58
Query: 445 LIDGV---NLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGK--THAT--------- 489
LIDG LK L+ +R +IG++ Q+ L+ S+ +N+ G+ +T
Sbjct: 59 LIDGTDINKLKGKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFP 118
Query: 490 KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
KEE Q A A GL + QLSGGQ+QRVAIARA+++ P+++L DE
Sbjct: 119 KEEKQRALAALERV--------GLLDKAYQRADQLSGGQQQRVAIARALMQQPKLILADE 170
Query: 550 ATSALDSESGRMVQEALDRVMINRT---TVIVS-HRLSLIR-NANIIAVIQQGKIVEKGT 604
++LD S R V + L R INR TVIVS H++ L R A+ I ++ G+IV G
Sbjct: 171 PVASLDPASSRQVMDLLKR--INREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGP 228
Query: 605 HSEL 608
+EL
Sbjct: 229 PAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|216049 pfam00664, ABC_membrane, ABC transporter transmembrane region | Back alignment and domain information |
|---|
Score = 134 bits (339), Expect = 9e-35
Identities = 78/279 (27%), Positives = 133/279 (47%), Gaps = 12/279 (4%)
Query: 63 LVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASF 122
++ I A L P + F D + N +S + +A+G
Sbjct: 5 ILLLILAGATALVFPLLLGRFLDSLID--GNGD-----ERSSLISLAILLIAVGVLQGLL 57
Query: 123 FQVACWMITGERQAARIRSFYLETILRQDIAFFDKEIN---TGEVVGRISGDTLLIQDAI 179
Q GER RIR +LRQ + + GE+ R++ D I+D +
Sbjct: 58 LQG--SFYLGERLGQRIRKRLFRALLRQILGLPMSFFDTNSVGELTSRLTNDVSKIRDGL 115
Query: 180 GEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAA 239
G+K+G F Q A+ +GGF++ F+ GW LTL +L+ +P L++ V+ K + L ++Q A
Sbjct: 116 GDKLGLFFQSLATVVGGFIVMFYYGWKLTLVLLAILPLLILLSAVLAKKLRKLNRKEQKA 175
Query: 240 DSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFII 299
+ A +V +++ IRTV +F E+ Y+K L + K+ +++ + GL G + I
Sbjct: 176 YAKAGSVAEESLSGIRTVKAFGREEYELERYDKALEDAEKAGIKKAITAGLSFGITQLIS 235
Query: 300 FSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSL 338
+ +Y L +W+GA L++ G S G V + + L S L
Sbjct: 236 YLSYALALWFGAYLVISGGLSVGTVFAFLSLGLQLSGPL 274
|
This family represents a unit of six transmembrane helices. Many members of the ABC transporter family (pfam00005) have two such regions. Length = 274 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 9e-35
Identities = 74/237 (31%), Positives = 125/237 (52%), Gaps = 22/237 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I++++V+FSYP + L I G A++G +GSGKST+ ++ PQ+GE+
Sbjct: 8 IKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEI 66
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG------KTHATKEEIQAA 496
IDG+ + + LK IR+KIG++ Q P + +++ D+IA+G K+ I
Sbjct: 67 KIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDL 126
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
A+ ++ PQ LSGGQKQRVAIA + +P I++ DE+TS LD
Sbjct: 127 AKKVGMEDYLDKEPQ-----------NLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 557 ESGRMVQEALDRVMINRTTVIVS--HRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
+ R +++ + + R ++S H + A+ + V +GK++ +G E+L N
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232
|
Length = 271 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 1e-34
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 60/215 (27%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
E+++++F Y R L+ L + G I ALVG +GSGKST++ I P +GE+L
Sbjct: 1 EIENLSFRYGGRT---ALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEIL 57
Query: 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHF 505
IDG ++ + L+ +R +IG V Q LS
Sbjct: 58 IDGKDIAKLPLEELRRRIGYVPQ----LS------------------------------- 82
Query: 506 IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
GGQ+QRVA+ARA++ +P +LLLDE TS LD S + E
Sbjct: 83 --------------------GGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLEL 122
Query: 566 LDRVMI-NRTTVIVSHRLSLIRNANI-IAVIQQGK 598
L + RT +IV+H L A + V++ GK
Sbjct: 123 LRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 2e-34
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 17/234 (7%)
Query: 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
L G + V+ P R + ++ G+ +A++G SGSGKST+ L+ +
Sbjct: 310 LPEPEGHLSVENVTIVPPGGKK-PTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIW 368
Query: 1064 DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM------------- 1110
P+SG + LDG ++++ + + +G + Q+ LF T+ NIA
Sbjct: 369 PPTSGSVRLDGADLKQWDRETFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAA 428
Query: 1111 --ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
A + I L +GYDT++G G LSGGQ+QR+A+ARA+ +PK+++LDE S LD E
Sbjct: 429 KLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEPNSNLDEE 488
Query: 1169 SERVVQDALDQVMVDR-TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221
E+ + +A+ + T +V+ HR S + I V+ G I G + +++
Sbjct: 489 GEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-34
Identities = 68/199 (34%), Positives = 107/199 (53%), Gaps = 16/199 (8%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ + + + G+ + ++G SGSGKST+ LL + P+SG + LDG ++++ + L +
Sbjct: 351 ILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGR 410
Query: 1088 QMGVVSQEPVLFSDTIRANIAEM---------------ANANGFISGLQEGYDTLVGERG 1132
+G + Q+ LF TI NIA A + I L +GYDT +GE G
Sbjct: 411 HIGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGG 470
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAH 1191
LSGGQ+QR+A+ARA+ +P +++LDE S LD E E + A+ T +V+AH
Sbjct: 471 ATLSGGQRQRIALARALYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
Query: 1192 RLSTIKNAHLIAVVSQGMI 1210
R S + + I V+ G I
Sbjct: 531 RPSALASVDKILVLQDGRI 549
|
Length = 580 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 133 bits (338), Expect = 2e-34
Identities = 67/247 (27%), Positives = 120/247 (48%), Gaps = 27/247 (10%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
+ ++ ++ KY + + PG+ L+G +G+GK+T++ +L P+S
Sbjct: 2 IEVIEVRNLTKKY--GGDKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTS 59
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFIS-------- 1118
G I + G ++ K + +R+++G V QEP L+ + T+R N+ A G
Sbjct: 60 GEILVLGYDVVK-EPAKVRRRIGYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIE 118
Query: 1119 ------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
GL++ + V LSGG KQR++IA A++ +P++L+LDE TS LD ES R
Sbjct: 119 ELLELFGLEDKANKKVR----TLSGGMKQRLSIALALLHDPELLILDEPTSGLDPESRRE 174
Query: 1173 VQDALDQVMVDR---TTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+ + L + + T L+ H L + + +++ G I+ +G+ E L G
Sbjct: 175 IWELL-RELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEKFGGKGV 233
Query: 1229 SLIEPHT 1235
+EP
Sbjct: 234 IELEPER 240
|
Length = 293 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 2e-34
Identities = 66/224 (29%), Positives = 104/224 (46%), Gaps = 50/224 (22%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
E+++++ Y R +L+ L I G I ++G +G+GKST++ + P +GE+L
Sbjct: 1 EVENLSVGYGGRT---VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEIL 57
Query: 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHF 505
+DG +L K + KI V Q A E +H
Sbjct: 58 LDGKDLASLSPKELARKIAYVPQ---------------------------ALELLGLAHL 90
Query: 506 IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
D E LSGG++QRV +ARA+ ++P ILLLDE TS LD E
Sbjct: 91 -------ADRPFNE----LSGGERQRVLLARALAQEPPILLLDEPTSHLDI---AHQIEL 136
Query: 566 LDRVM-----INRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKG 603
L+ + +T V+V H L+L R A+ + +++ G+IV +G
Sbjct: 137 LELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQG 180
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 2e-34
Identities = 79/242 (32%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ELK+V S+ + +L L I +G L+G SG GKST++ +I +P +GE+
Sbjct: 4 LELKNVRKSFGSFE---VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEI 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG--KTHATKEEIQA----AA 497
LIDG ++ + + + I +V Q L ++ +NIA+G K EI A
Sbjct: 61 LIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVA 118
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ H + P QLSGGQ+QRVA+ARA+++ P++ LLDE S LD++
Sbjct: 119 KLLGLEHLLNRKPL-----------QLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 558 S-GRMVQE--ALDRVMINRTTVIVSHR----LSLIRNANIIAVIQQGKIVEKGTHSELLE 610
M E L + TT+ V+H ++L A+ I V+ G+I + GT EL E
Sbjct: 168 LRVLMRSEIKKLHE-RLGTTTIYVTHDQVEAMTL---ADRIVVMNDGRIQQVGTPLELYE 223
Query: 611 NP 612
P
Sbjct: 224 RP 225
|
Length = 338 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 131 bits (332), Expect = 3e-34
Identities = 80/237 (33%), Positives = 120/237 (50%), Gaps = 36/237 (15%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M E++ L SF EV + + L++ G+ + ++G SGSGKST++ L +P S
Sbjct: 2 MIEIKNLSKSFG-----DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDS 56
Query: 1068 GHITLDGVEI-QKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAE-------------MAN 1112
G IT+DG ++ K + LR+++G+V Q+ LF T+ N+
Sbjct: 57 GSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREK 116
Query: 1113 ANGFIS--GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
A + GL + D QLSGGQ+QRVAIARA+ +PK++L DE TSALD E
Sbjct: 117 ALELLEKVGLADKADAYPA----QLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPEL- 171
Query: 1171 RVVQDALDQVMVD-----RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
V + LD VM D T ++V H + + A + + QG I+E+G E
Sbjct: 172 --VGEVLD-VMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFD 225
|
Length = 240 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 128 bits (325), Expect = 4e-34
Identities = 60/217 (27%), Positives = 107/217 (49%), Gaps = 46/217 (21%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+++++ Y + L+ L + G I L+G +G+GK+T+I +I P +GE+
Sbjct: 1 IEVRNLSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
+ G ++K+ + ++ +IG + +EP
Sbjct: 58 KVLGKDIKKEPEE-VKRRIGYLPEEP---------------------------------- 82
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
+L + L V E+ ++LSGG KQR+A+A+A++ DP +L+LDE TS LD ES R E
Sbjct: 83 ---SLYENL--TVREN-LKLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWE 136
Query: 565 ALDRVMINRTTVIV-SHRLSLIRN-ANIIAVIQQGKI 599
L + T+++ SH L + +A++ G+I
Sbjct: 137 LLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 5e-34
Identities = 71/238 (29%), Positives = 118/238 (49%), Gaps = 31/238 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I ++V+ +YP + L IP G L G SG+GKST++ LI P G++
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 445 LIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAY-----GKTHAT-KEEIQ 494
L++G + LK ++ ++R +IG+V Q+ LL ++ +N+A GK + +
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+ H + LP QLSGG++QRVAIARA++ P +LL DE T L
Sbjct: 120 EVLDLVGLKHKARALP-----------SQLSGGEQQRVAIARAIVNQPAVLLADEPTGNL 168
Query: 555 DSESGRMVQEALDRVMINR--TTVIV-SHRLSLI--RNANIIAVIQQGKIVEKGTHSE 607
D + + + INR TTV++ +H L L+ ++A ++ G++V +
Sbjct: 169 DPDLSWEIMRLFEE--INRLGTTVLMATHDLELVNRMRHRVLA-LEDGRLVRDESRGV 223
|
Length = 223 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 130 bits (329), Expect = 9e-34
Identities = 67/205 (32%), Positives = 101/205 (49%), Gaps = 28/205 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++ V+ S+ +L L + G A++G SG GKST++ LI P +GEV
Sbjct: 4 LEIEGVSKSFGGVE---VLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEV 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYG--KTHATKEEIQAAAEAA- 500
L+DG + IG V QE LL ++ DN+A G +K E + A+
Sbjct: 61 LLDGRPVTG-----PGPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELL 115
Query: 501 ---NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ F P QLSGG +QRVAIARA+ P++LLLDE ALD+
Sbjct: 116 ELVGLAGFEDKYPH-----------QLSGGMRQRVAIARALATRPKLLLLDEPFGALDAL 164
Query: 558 SGRMVQEALDRVM--INRTTVIVSH 580
+ +Q+ L R+ +T ++V+H
Sbjct: 165 TREELQDELLRLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 2e-33
Identities = 83/212 (39%), Positives = 123/212 (58%), Gaps = 29/212 (13%)
Query: 1043 ALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102
+L E GSG+ + + +SG I LDGV+I +K LR +VSQEP+LF+ +
Sbjct: 1259 SLTKEGGSGEDSTVF-------KNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311
Query: 1103 IRANI---------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIAR 1147
I NI + A + FI L YDT VG G LSGGQKQR+AIAR
Sbjct: 1312 IYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIAR 1371
Query: 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVV 1205
A+++EPKILLLDEATS+LD SE++++ + + D+T + +AHR+++IK + I V
Sbjct: 1372 ALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVF 1431
Query: 1206 SQ----GMIVE-KGSHESLISTKNGIYTSLIE 1232
+ G V+ G+HE L+S ++G+Y ++
Sbjct: 1432 NNPDRTGSFVQAHGTHEELLSVQDGVYKKYVK 1463
|
Length = 1466 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 2e-33
Identities = 64/187 (34%), Positives = 104/187 (55%), Gaps = 24/187 (12%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHITLDGVEIQKLQV 1082
+E +D+ L I G+ +A+VG SGSGKST ++ L + P+SG + ++G ++ KL
Sbjct: 18 VEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDK---PTSGEVLINGKDLTKLSE 74
Query: 1083 KWL----RQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEG-YDTLVGERGV--- 1133
K L R+++G V Q L D T+ N+ G +G ++ + L+ G+
Sbjct: 75 KELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDR 134
Query: 1134 -------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR-- 1184
+LSGGQ+QRVAIARA++ PKI+L DE T LD ++ + V + L ++ +R
Sbjct: 135 LLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGK 194
Query: 1185 TTLVVAH 1191
T ++V H
Sbjct: 195 TIIMVTH 201
|
Length = 226 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 2e-33
Identities = 56/198 (28%), Positives = 107/198 (54%), Gaps = 33/198 (16%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+S +Y + D+ LT+ G+ L+G +G+GK+T+I ++ P SG I + G
Sbjct: 6 LSKRYGKKT---ALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGK 62
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
+I+K + +++++G + +EP L+ + T+R N+ +
Sbjct: 63 DIKKEPEE-VKRRIGYLPEEPSLYENLTVRENL--------------------------K 95
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA-HRL 1193
LSGG KQR+A+A+A++ +P++L+LDE TS LD ES R + L ++ + T++++ H L
Sbjct: 96 LSGGMKQRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHIL 155
Query: 1194 STIKN-AHLIAVVSQGMI 1210
+ +A+++ G I
Sbjct: 156 EEAERLCDRVAILNNGRI 173
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 2e-33
Identities = 78/239 (32%), Positives = 134/239 (56%), Gaps = 17/239 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
G ++F V +Y RP + V L I P + + +VG +G+GKS++++ L R +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AEMANA 1113
G I +DG +I K + LR+ +G++ Q PVLFS T+R N+ E A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHL 1353
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
I G D V E G S GQ+Q +++ARA+++ KIL+LDEAT+A+D+ ++ ++
Sbjct: 1354 KDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALI 1413
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
Q + + T L++AHRL+TI + I V+ G +VE + E+L+S + ++ +++
Sbjct: 1414 QKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 139 bits (352), Expect = 4e-33
Identities = 76/240 (31%), Positives = 140/240 (58%), Gaps = 4/240 (1%)
Query: 383 GDIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
G I+ +DV Y RP+ +L+G I +VG +G+GKS++++ + R + +
Sbjct: 1236 GSIKFEDVVLRY--RPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELER 1293
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAAN 501
G +LIDG ++ +F L +R+ +G++ Q PVL S ++R N+ H ++ + E A+
Sbjct: 1294 GRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEH-NDADLWESLERAH 1352
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
I+ GLD V E G S GQ+Q +++ARA+++ +IL+LDEAT+A+D + +
Sbjct: 1353 LKDVIRRNSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDAL 1412
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
+Q+ + + T +I++HRL+ I + + I V+ G++VE T LL N A++++++
Sbjct: 1413 IQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQ 1472
|
Length = 1622 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 6e-33
Identities = 62/195 (31%), Positives = 92/195 (47%), Gaps = 19/195 (9%)
Query: 1011 VQFLRVSFKYPT-RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ VS Y + D+ L++ G+ +ALVG SG GKST++ ++ P+SG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQ----EGY 1124
+ +DG + G V Q+ L T+ N+A G E
Sbjct: 61 VLVDGEPVTG-----PGPDRGYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEEL 115
Query: 1125 DTLVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
LVG G QLSGG +QRVA+ARA+ +P +LLLDE SALD + +Q+ L
Sbjct: 116 LELVGLSGFENAYPHQLSGGMRQRVALARALAVDPDVLLLDEPFSALDALTREQLQEELL 175
Query: 1179 QVMVDR--TTLVVAH 1191
+ + T L+V H
Sbjct: 176 DIWRETGKTVLLVTH 190
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 7e-33
Identities = 69/209 (33%), Positives = 109/209 (52%), Gaps = 32/209 (15%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
DL LT+ PG+ +AL+G SG GK+T++ L+ P SG I +DG ++ + + R+
Sbjct: 15 ALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPPE--RR 72
Query: 1088 QMGVVSQEPVLF-------------------SDTIRANIAEMANANGFISGLQEGYDTLV 1128
+G+V Q+ LF IRA + E+ G + L+
Sbjct: 73 NIGMVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELL--------ELVGLEGLL 124
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTT 1186
+LSGGQ+QRVA+ARA+ +EP +LLLDE SALD + +++ L ++ + TT
Sbjct: 125 NRYPHELSGGQQQRVALARALAREPSLLLLDEPLSALDAKLREELREELKELQRELGITT 184
Query: 1187 LVVAHRLS-TIKNAHLIAVVSQGMIVEKG 1214
+ V H + A IAV+++G IV+ G
Sbjct: 185 IYVTHDQEEALALADRIAVMNEGRIVQVG 213
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 65/199 (32%), Positives = 97/199 (48%), Gaps = 31/199 (15%)
Query: 1016 VSFKYPT-RPHIEVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHIT 1071
+S Y ++ + + L+I G+ +A+VG SGSGKST ++ L R P+SG +
Sbjct: 6 LSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDR---PTSGEVR 62
Query: 1072 LDGVEIQKL----QVKWLRQQMGVVSQEPVLFSD-TIRANIA------------EMANAN 1114
+DG +I KL + R+ +G V Q L D T N+ A
Sbjct: 63 VDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAE 122
Query: 1115 GFIS--GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
+ GL + + +LSGGQ+QRVAIARA+ +PKI+L DE T LD E+ +
Sbjct: 123 ELLERVGLGDRLNHYPS----ELSGGQQQRVAIARALANDPKIILADEPTGNLDSETGKE 178
Query: 1173 VQDAL-DQVMVDRTTLVVA 1190
V + L + TT+VV
Sbjct: 179 VMELLRELNKEAGTTIVVV 197
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-32
Identities = 78/230 (33%), Positives = 132/230 (57%), Gaps = 4/230 (1%)
Query: 382 RGDIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
RG +E ++ Y R D + +L + I G +VG +G+GKS++ + R +
Sbjct: 1282 RGRVEFRNYCLRY--REDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESA 1339
Query: 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
GE++IDG+N+ + L +R KI ++ Q+PVL S S+R N+ + + EE+ A E A
Sbjct: 1340 EGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQY-SDEEVWWALELA 1398
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ F+ LP LD E G LS GQ+Q V +ARA+++ +IL+LDEAT+A+D E+
Sbjct: 1399 HLKTFVSALPDKLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDN 1458
Query: 561 MVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
++Q + + T + ++HRL+ I + + V+ +G++ E G S LL+
Sbjct: 1459 LIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAEFGAPSNLLQ 1508
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 73/227 (32%), Positives = 116/227 (51%), Gaps = 26/227 (11%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VS YP E RD+ IP G+ + L G SG+GKST++ L+ P+ G I
Sbjct: 2 IRFENVSKAYPGGR--EALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKI 59
Query: 1071 TLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-TIRANIA--------EMANANGFIS 1118
++G ++ +L ++ +LR+Q+GVV Q+ L D T+ N+A +S
Sbjct: 60 LVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 1119 GLQEGYDTLVGERG------VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
+ + LVG + QLSGG++QRVAIARAIV +P +LL DE T LD +
Sbjct: 120 EVLD----LVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWE 175
Query: 1173 VQDALDQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQGMIVEKGSHE 1217
+ +++ TT+++A H L + H + + G +V S
Sbjct: 176 IMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESRG 222
|
Length = 223 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-32
Identities = 64/243 (26%), Positives = 118/243 (48%), Gaps = 30/243 (12%)
Query: 377 KLDDIR---GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
K++++ + +LK+V+ + G ++G +GSGKS ++ I
Sbjct: 2 KVENLSKDWKEFKLKNVSLE----------------VERGDYFVILGPTGSGKSVLLETI 45
Query: 434 QRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEE 492
F P +G++L++G ++ L + I V Q L ++ NIAYG ++
Sbjct: 46 AGFIKPDSGKILLNGKDITN--LPPEKRDISYVPQNYALFPHMTVYKNIAYGLKKRKVDK 103
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ + + + + L+ LSGG++QRVAIARA++ +P+ILLLDE S
Sbjct: 104 KEIERKVLEIAEML-GIDHLLNRKPE----TLSGGEQQRVAIARALVVNPKILLLDEPFS 158
Query: 553 ALDSESGRMVQEALDRVM-INRTTVI-VSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609
ALD + ++E L ++ TV+ V+H A+ +A++ GK+++ G E+
Sbjct: 159 ALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVF 218
Query: 610 ENP 612
+ P
Sbjct: 219 KKP 221
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 124 bits (313), Expect = 4e-32
Identities = 63/223 (28%), Positives = 109/223 (48%), Gaps = 45/223 (20%)
Query: 1011 VQFLRVSFKYPTRPHIEVF--RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
+ SF + + F +D+ L +P G+ +A+VG GSGKS+++S L + SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF------------ 1116
+++ G + VSQEP + + TIR NI F
Sbjct: 61 SVSVPG-------------SIAYVSQEPWIQNGTIRENIL-------FGKPFDEERYEKV 100
Query: 1117 ---------ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+ L +G T +GE+G+ LSGGQKQR+++ARA+ + I LLD+ SA+D
Sbjct: 101 IKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDADIYLLDDPLSAVDA 160
Query: 1168 E-SERVVQDALDQVMVD-RTTLVVAHRLSTIKNAHLIAVVSQG 1208
+ ++ + ++++ +T ++V H+L + +A I V+ G
Sbjct: 161 HVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNG 203
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 135 bits (341), Expect = 7e-32
Identities = 93/304 (30%), Positives = 155/304 (50%), Gaps = 32/304 (10%)
Query: 957 LSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK-IDSSEYTGRTLEN--------V 1007
LS T + S + ASKA++S SV ++V ID +EN
Sbjct: 1176 LSYTLNITTLLSGVLRQASKAENSLNSV----ERVGNYIDLPSEATAIIENNRPVSGWPS 1231
Query: 1008 MGEVQFLRVSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS 1066
G ++F V +Y RP + V L + P + + +VG +G+GKS++++ L R +
Sbjct: 1232 RGSIKFEDVHLRY--RPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELE 1289
Query: 1067 SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AEMAN 1112
G I +D ++ K + LR+ + ++ Q PVLFS T+R NI E A+
Sbjct: 1290 KGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAH 1349
Query: 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
I G D V E G S GQ+Q +++ARA+++ KIL+LDEAT+++D+ ++ +
Sbjct: 1350 IKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSL 1409
Query: 1173 VQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+Q + + T LV+AHRL+TI + I V+S G ++E S + L+S + ++
Sbjct: 1410 IQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMV- 1468
Query: 1233 PHTT 1236
H+T
Sbjct: 1469 -HST 1471
|
Length = 1495 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 127 bits (321), Expect = 8e-32
Identities = 83/240 (34%), Positives = 130/240 (54%), Gaps = 21/240 (8%)
Query: 385 IELKDVN-FSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I+L ++ + Q LN L +P G I ++G SG+GKST+I + P +G
Sbjct: 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGS 61
Query: 444 VLIDGVNL---KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAY--GKTHATKEEIQAAA 497
V++DG +L +L R +IG++ Q LLSS ++ N+A + K+EI+
Sbjct: 62 VIVDGQDLTTLSNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKV 121
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
A GL + LSGGQKQRVAIARA+ +P++LL DEATSALD
Sbjct: 122 TELLAL-------VGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPA 174
Query: 558 SGRMVQEALDRVMINR----TTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
+ + + E L INR T ++++H + ++ R + +AVI G+++E+GT SE+ +P
Sbjct: 175 TTQSILELLKE--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHP 232
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 9e-32
Identities = 77/229 (33%), Positives = 120/229 (52%), Gaps = 30/229 (13%)
Query: 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ +S +P I ++ L IP G+ ++G SG+GKST+I + P+SG
Sbjct: 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGR 61
Query: 1070 ITLDGVEIQKLQVKWL---RQQMGVVSQE-PVLFSDTIRANIA---EMANAN-GFIS--- 1118
+ +DG ++ L K L R+Q+G++ Q +L S T+ N+A E+A I
Sbjct: 62 VLVDGQDLTALSEKELRKARRQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARV 121
Query: 1119 -------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
GL + D QLSGGQKQRVAIARA+ PK+LL DEATSALD + R
Sbjct: 122 TELLELVGLSDKADRYPA----QLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTR 177
Query: 1172 VVQDALDQVMVDR----TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + L ++R T +++ H + +K +AV+ G +VE+G+
Sbjct: 178 SILELLKD--INRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGT 224
|
Length = 343 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 128 bits (324), Expect = 9e-32
Identities = 78/221 (35%), Positives = 126/221 (57%), Gaps = 19/221 (8%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLKWI 459
+N L + G I ++G SGSGKST++ L+ R +P GE+L+DG L +L+ +
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 460 R-EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEA---ANASHFIKNLPQGLD 514
R +KI +V Q LL ++ +N+A+G E+Q +A A ++ + GL+
Sbjct: 104 RRKKISMVFQSFALLPHRTVLENVAFGL------EVQGVPKAEREERALEALELV--GLE 155
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MIN 572
++ +LSGG +QRV +ARA+ DP ILL+DEA SALD +Q+ L + +
Sbjct: 156 GYADKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLK 215
Query: 573 RTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
+T V ++H L +R + IA+++ G+IV+ GT E+L NP
Sbjct: 216 KTIVFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEILLNP 256
|
Length = 386 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-31
Identities = 73/208 (35%), Positives = 108/208 (51%), Gaps = 32/208 (15%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI--QKLQVKW 1084
V + + LT+ G+ + ++G SGSGKST++ + +P SG I +DG+++ K +
Sbjct: 14 HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINE 73
Query: 1085 LRQQMGVVSQEPVLFSD-TIRANIAE-------MANANGFISGLQEGYDTL--VG----- 1129
LRQ++G+V Q+ LF T+ NI M+ A + + L VG
Sbjct: 74 LRQKVGMVFQQFNLFPHLTVLENITLAPIKVKGMSKA----EAEERALELLEKVGLADKA 129
Query: 1130 -ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD----- 1183
QLSGGQ+QRVAIARA+ PK++L DE TSALD E +V + LD VM D
Sbjct: 130 DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDPE---LVGEVLD-VMKDLAEEG 185
Query: 1184 RTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210
T +VV H + + A + + G I
Sbjct: 186 MTMVVVTHEMGFAREVADRVIFMDDGRI 213
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|213255 cd03288, ABCC_SUR2, ATP-binding cassette domain 2 of the sulfonylurea receptor SUR | Back alignment and domain information |
|---|
Score = 124 bits (312), Expect = 2e-31
Identities = 76/241 (31%), Positives = 133/241 (55%), Gaps = 6/241 (2%)
Query: 383 GDIELKDVNFSYPA--RPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
G+I++ D+ Y +P +L I G + G +GSGKS++ R D
Sbjct: 18 GEIKIHDLCVRYENNLKP---VLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIF 74
Query: 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
G+++IDG+++ + L +R ++ ++ Q+P+L S SIR N+ T + + A E A
Sbjct: 75 DGKIVIDGIDISKLPLHTLRSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIA 133
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ +K+LP GLD V E G S GQ+Q +ARA ++ IL++DEAT+++D +
Sbjct: 134 QLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVRKSSILIMDEATASIDMATEN 193
Query: 561 MVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
++Q+ + +RT V ++HR+S I +A+++ V+ +G +VE T LL G + L+
Sbjct: 194 ILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253
Query: 621 R 621
R
Sbjct: 254 R 254
|
The SUR domain 2. The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 257 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 126 bits (318), Expect = 2e-31
Identities = 76/267 (28%), Positives = 132/267 (49%), Gaps = 43/267 (16%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ--- 440
+E+K+++ S+P + ++G + G I +VG SGSGKS + I
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 441 --AGEVLIDGVNL---KEFQLKWIR-EKIGLVSQEPVLLSS-----SIRDNIAYG-KTH- 487
GE+L DG +L E +L+ IR ++I ++ Q+P ++S +I D IA + H
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDP--MTSLNPVMTIGDQIAEVLRLHG 119
Query: 488 --ATKEEIQAAAEAA-------NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538
+K+E + A + +K+ P H +LSGG +QRV IA A+
Sbjct: 120 KGLSKKEAKERAIELLELVGIPDPERRLKSYP---------H--ELSGGMRQRVMIAMAL 168
Query: 539 IKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQ 595
+P++L+ DE T+ALD + + L + ++++H L ++ A+ +AV+
Sbjct: 169 ALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMY 228
Query: 596 QGKIVEKGTHSELLENPYGAYNR-LIR 621
G+IVE+G E+ +NP Y R L+
Sbjct: 229 AGRIVEEGPVEEIFKNPKHPYTRGLLN 255
|
Length = 316 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (317), Expect = 2e-31
Identities = 71/244 (29%), Positives = 115/244 (47%), Gaps = 37/244 (15%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP---- 1065
EV+ L VSF ++ + + G+ + +VGESGSGKS + +
Sbjct: 3 EVKNLSVSFPTDAGV-VKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNAR 61
Query: 1066 -SSGHITLDGVEIQKLQVKWLRQ----QMGVVSQE------PVLFSDTIRANIAEMANAN 1114
G I DG ++ L K LR+ ++ ++ Q+ PV+ TI IAE+ +
Sbjct: 62 IVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVM---TIGDQIAEVLRLH 118
Query: 1115 GFISGLQEGYDT------LVG-----ERG----VQLSGGQKQRVAIARAIVKEPKILLLD 1159
G +E + LVG R +LSGG +QRV IA A+ PK+L+ D
Sbjct: 119 GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLLIAD 178
Query: 1160 EATSALDIESERVVQDALDQVMVDRTT--LVVAHRLSTIKN-AHLIAVVSQGMIVEKGSH 1216
E T+ALD+ + + D L ++ ++ T +++ H L + A +AV+ G IVE+G
Sbjct: 179 EPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGPV 238
Query: 1217 ESLI 1220
E +
Sbjct: 239 EEIF 242
|
Length = 316 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 2e-31
Identities = 79/239 (33%), Positives = 120/239 (50%), Gaps = 34/239 (14%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ L DV FSY P F L +P G I A++G SG+GKST+++LI F P +GE
Sbjct: 1 MLALDDVRFSYGHLPMR-----FDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGE 55
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGK------THATKEEIQAA 496
+LI+GV+ + ++ QE L + ++ NI G +E+++AA
Sbjct: 56 ILINGVDHT--ASPPAERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAA 113
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
A + F+K LP +LSGGQ+QRVA+AR ++++ ILLLDE SALD
Sbjct: 114 AAQVGLAGFLKRLPG-----------ELSGGQRQRVALARCLVREQPILLLDEPFSALDP 162
Query: 557 ESGRMVQEALDRVM-----INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELL 609
+ E L V T ++V+H R A+ + + G+I +G+ ELL
Sbjct: 163 A---LRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELL 218
|
Length = 231 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 125 bits (315), Expect = 3e-31
Identities = 74/230 (32%), Positives = 122/230 (53%), Gaps = 25/230 (10%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VS +Y + D+ LTI G+ + L+G SGSGK+T + ++ R +P+SG I
Sbjct: 2 IEFENVSKRYGNKK---AVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEI 58
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF------------- 1116
+DG +I L LR+++G V Q+ LF T+ NIA + G+
Sbjct: 59 LIDGEDISDLDPVELRRKIGYVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELL 118
Query: 1117 -ISGLQEGYDTLVGER-GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
+ GL +R +LSGGQ+QRV +ARA+ +P ILL+DE ALD + + +Q
Sbjct: 119 DLVGLDPS---EYADRYPHELSGGQQQRVGVARALAADPPILLMDEPFGALDPITRKQLQ 175
Query: 1175 DALD--QVMVDRTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIS 1221
+ + Q + +T + V H + +K A IAV+ G IV+ + + +++
Sbjct: 176 EEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILA 225
|
Length = 309 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (310), Expect = 3e-31
Identities = 83/246 (33%), Positives = 128/246 (52%), Gaps = 27/246 (10%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD---- 438
G I +KD++ Y D Q L L I + AL+G SG GKST + + R D
Sbjct: 2 GKISVKDLDLFYG---DFQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPS 58
Query: 439 -PQAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHA--TKEE 492
GEVL+DG ++ + + +R+++G+V Q+P SI DN+AYG +TH K++
Sbjct: 59 VKIEGEVLLDGQDIYKSDIDVNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKK 118
Query: 493 IQAAAEAANASHFIKNLPQG-----LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLL 547
+ E K+L + + + + LSGGQ+QR+ IARA+ +P +LL+
Sbjct: 119 LDEIVE--------KSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIARALAVEPEVLLM 170
Query: 548 DEATSALDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHS 606
DE TSALD S ++E + + + T VIV+H + R ++ A G+IVE G
Sbjct: 171 DEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTV 230
Query: 607 ELLENP 612
+L NP
Sbjct: 231 DLFTNP 236
|
Length = 250 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 123 bits (309), Expect = 3e-31
Identities = 73/240 (30%), Positives = 130/240 (54%), Gaps = 19/240 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IE+++ + Y +++ + + I I A++G SG GK+T++ I R D
Sbjct: 4 IEIENFSAYYG---EKKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFR 60
Query: 440 QAGEVLIDGVNLKE--FQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEI--- 493
G++ G ++ + + R+K+G+V Q+P SI DN+A+G + H K +
Sbjct: 61 VEGKIYFKGQDIYDPQLDVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLD 120
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+ E+ + + L+ G +LSGGQ+QR+ IARA+ +P ++LLDE TSA
Sbjct: 121 RIVEESLKKAALWDEVKSELNKP----GTRLSGGQQQRLCIARALAVEPEVILLDEPTSA 176
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
LD + + +++ L+ + N T VIV+H + IR A+ IA + +G+++E G E++E P
Sbjct: 177 LDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERP 236
|
Length = 250 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 126 bits (317), Expect = 3e-31
Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF---QLKWI-REKI 463
L I G I ++G SGSGKST + ++ R +P AG++ IDG N+ + +L+ + R+KI
Sbjct: 14 LAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKI 73
Query: 464 GLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
G+V Q+ L +I N + G E + +A + GL+ +
Sbjct: 74 GMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKLV-----GLEEYEHRYPD 128
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSH 580
+LSGG +QRV +ARA+ +P ILL+DEA SALD +Q+ L ++ + +T V ++H
Sbjct: 129 ELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVFITH 188
Query: 581 RL-SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
L IR + I +++ G+IV+ GT E+L NP Y
Sbjct: 189 DLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (307), Expect = 6e-31
Identities = 75/221 (33%), Positives = 127/221 (57%), Gaps = 21/221 (9%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M E++F VS+ + E+ +D+ + G +VG SG+GKST+I L+ R DP+
Sbjct: 1 MNEIEFKEVSY---SSFGKEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTE 57
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------AEMANANGFIS- 1118
G I +DGV+I+ + V LR+++G+V Q+P LF T++ NI + + ++S
Sbjct: 58 GSILIDGVDIKTIDVIDLRRKIGMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSI 117
Query: 1119 -GLQEGYDTLVGERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
GL + Y T R V+ LSGG+ QRV+IAR + P++LLLDE TSALD S ++++
Sbjct: 118 VGLNKEYAT----RDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTSTEIIEEL 173
Query: 1177 LDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
+ ++ ++ T + + H + K A +++G++VE
Sbjct: 174 IVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214
|
Length = 241 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 6e-31
Identities = 73/226 (32%), Positives = 113/226 (50%), Gaps = 26/226 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+SF+YP R +D+ L I G+ + L+G +GSGKST++ LL P+SG + +DG+
Sbjct: 9 LSFRYPGRK--AALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGL 66
Query: 1076 EIQKLQVKW-LRQQMGVVSQEPV--LFSDTIRANIA-----------EMANANGFIS--- 1118
+ + LRQ++G+V Q P LF T+ +A E+
Sbjct: 67 DTSSEKSLLELRQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELV 126
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
GL+E D LSGGQKQRVAIA + P+ILLLDE T+ LD + R + + L
Sbjct: 127 GLEELLDRPPFN----LSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRRELLELLK 182
Query: 1179 QVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
++ + T ++V H L + A + V+ G I+ G + +
Sbjct: 183 KLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFN 228
|
Length = 235 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 122 bits (309), Expect = 6e-31
Identities = 67/207 (32%), Positives = 99/207 (47%), Gaps = 37/207 (17%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
+I G+T+ LVGESG GKST+ L+ +P+SG I +G +I KL
Sbjct: 34 FSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS------------ 81
Query: 1094 QEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153
+ R + E+ G +E E LSGGQ+QR+ IARA+ P
Sbjct: 82 ------KEERRERVLELLEKVGL---PEEFLYRYPHE----LSGGQRQRIGIARALALNP 128
Query: 1154 KILLLDEATSALDIESERVVQDALDQVMVDR------TTLVVAHRLSTIKN-AHLIAVVS 1206
K+++ DE SALD+ VQ + ++ D T L ++H LS ++ + IAV+
Sbjct: 129 KLIVADEPVSALDV----SVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMY 184
Query: 1207 QGMIVEKGSHESLISTKNGIYT-SLIE 1232
G IVE G E + S YT +L+
Sbjct: 185 LGKIVEIGPTEEVFSNPLHPYTKALLS 211
|
Length = 268 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 121 bits (306), Expect = 1e-30
Identities = 76/248 (30%), Positives = 127/248 (51%), Gaps = 52/248 (20%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ V+ + R + + L +P G+ +A++G SGSGKST++ L+ P G I
Sbjct: 9 IEVRGVTKSFGDRV---ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEI 65
Query: 1071 TLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-TIRANIA---------------EMA 1111
+DG +I +L ++ +R++MGV+ Q+ LFS T+ N+A E+
Sbjct: 66 LIDGEDIPQLSEEELYEIRKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELV 125
Query: 1112 NANGFISGLQEGYDTLVGERGV-------QLSGGQKQRVAIARAIVKEPKILLLDEATSA 1164
L+ LVG RG +LSGG ++RVA+ARAI +P++L LDE TS
Sbjct: 126 LMK-----LE-----LVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 1165 LDIESERV-------VQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSH 1216
LD S V + DAL T ++V H L ++ A +AV++ G ++ +G+
Sbjct: 176 LDPISAGVIDELIRELNDALGL-----TVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230
Query: 1217 ESLISTKN 1224
E L+++ +
Sbjct: 231 EELLASDD 238
|
Length = 263 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 2e-30
Identities = 71/214 (33%), Positives = 104/214 (48%), Gaps = 24/214 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE +V+ +YP L+ L I G L G SG+GK+T++ L+ P G+V
Sbjct: 2 IEFHNVSKAYP--GGVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 445 LIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIA------YGKTHATKEEIQ 494
I G + L+ QL +R +IG+V Q+ LL ++ +N+A K + +
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
AA H P QLSGG++QRVAIARA++ P +LL DE T L
Sbjct: 120 AALRQVGLEHKADAFP-----------EQLSGGEQQRVAIARAIVNSPPLLLADEPTGNL 168
Query: 555 DSESGRMVQEALDRVMINRTTVIV-SHRLSLIRN 587
D + + + L R+ TTVIV +H LSL+
Sbjct: 169 DPDLSERILDLLKRLNKRGTTVIVATHDLSLVDR 202
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 78/239 (32%), Positives = 123/239 (51%), Gaps = 28/239 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IEL++V+ Y L+G L I G L+G SG GK+T++ LI F P +GE+
Sbjct: 1 IELENVSKFYG---GFVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANAS 503
L+DG ++ L + + V Q L ++ +NIA+G + + A A
Sbjct: 58 LLDGKDIT--NLPPHKRPVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEAL 115
Query: 504 HFIKNLPQGLDTNVGEHG----IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
++ + + QLSGGQ+QRVAIARA++ +P++LLLDE ALD +
Sbjct: 116 DLVQ---------LEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLR 166
Query: 560 RMVQEALDRV--MINRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ +Q L R+ + T V V+H L++ ++ IAV+ +GKI + GT E+ E P
Sbjct: 167 KDMQLELKRLQKELGITFVFVTHDQEEALTM---SDRIAVMNKGKIQQIGTPEEIYEEP 222
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 2e-30
Identities = 78/243 (32%), Positives = 121/243 (49%), Gaps = 31/243 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I + +V + A L+ L I +G + AL+G SG+GKST++ +I P AG +
Sbjct: 3 IRINNVKKRFGAFG---ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRI 59
Query: 445 LIDGVNLKEFQLKWIRE-KIGLVSQEPVLL-SSSIRDNIAYG----KTHATKEEIQAAAE 498
++G L + +R+ K+G V Q L ++ DNIA+G K ++ EI+A E
Sbjct: 60 RLNGRVLFDVSNLAVRDRKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVE 119
Query: 499 A----ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
P QLSGGQ+QRVA+ARA+ +P++LLLDE AL
Sbjct: 120 ELLRLVQLEGLADRYPA-----------QLSGGQRQRVALARALAVEPKVLLLDEPFGAL 168
Query: 555 D----SESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609
D E R +++ DR+ TTV V+H A+ + V+ QG+I + G E+
Sbjct: 169 DAKVRKELRRWLRKLHDRL--GVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVY 226
Query: 610 ENP 612
++P
Sbjct: 227 DHP 229
|
Length = 345 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-30
Identities = 80/240 (33%), Positives = 127/240 (52%), Gaps = 26/240 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE K+V+ + Q+L+ L I G + ++G SGSGKST++ I + + +G++
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTH---ATKEEIQAAAE 498
++DG VN + + IR++ G+V Q+ L + +N+ +G A+KEE + A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A GL + +LSGGQ+QRVAIARA+ P+++L DE TSALD E
Sbjct: 119 ELLAK-------VGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPE- 170
Query: 559 GRMVQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ E L +VM + T VIV+H + A+ + I +G+I E G L++NP
Sbjct: 171 --LRHEVL-KVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKNP 227
|
Length = 240 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 3e-30
Identities = 74/239 (30%), Positives = 117/239 (48%), Gaps = 28/239 (11%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST----VISLLQRFYDP 1065
EV+ L V F V RD+ + PG+ + +VGESGSGKST ++ LL
Sbjct: 7 EVENLTVEFATDGGRVPAV-RDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMG----VVSQEPV-LFSD--TIRANIAEMANANGFIS 1118
+SG + LDG ++ L + +R+ G ++ Q+P+ + TI I E +G S
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGS 125
Query: 1119 GLQEGYDTL-----VG--ERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
+ + VG + QLSGG +QRV IA A+ +PK+L+ DE T+AL
Sbjct: 126 RAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIADEPTTAL 185
Query: 1166 DIESERVVQDALDQVMVDRTT--LVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
D+ ++ + D L + + L + H L + A + V+ +G IVE G E ++S
Sbjct: 186 DVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGPTEEILS 244
|
Length = 539 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 3e-30
Identities = 73/239 (30%), Positives = 119/239 (49%), Gaps = 28/239 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I ++ ++F YP L + G A+VG +GSGKST+ L+ P+AG +
Sbjct: 6 IRVEHISFRYP-DAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTI 64
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG------KTHATKEEIQAA 496
+ G+ L E + +R ++G+V Q P + ++++D++A+G E + A
Sbjct: 65 TVGGMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQA 124
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
F+ P +LSGGQKQRVAIA + P I++LDEATS LD
Sbjct: 125 LRQVGMEDFLNREPH-----------RLSGGQKQRVAIAGVLALQPDIIILDEATSMLDP 173
Query: 557 ESGRMVQEALDRVMI----NRTTVI-VSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
GR +E L+ V TV+ ++H L A+ + V+ +G+I+E+GT E+ +
Sbjct: 174 R-GR--REVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFK 229
|
Length = 279 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 6e-30
Identities = 63/229 (27%), Positives = 110/229 (48%), Gaps = 34/229 (14%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
E++D+ SY P +L + G A+VG +G+GKST++ I P +G +
Sbjct: 1 EVEDLTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIR 57
Query: 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSS---SIRDNIA---YGK-------THATKEE 492
+ G L++ R++IG V Q + S+RD + YG + A K +
Sbjct: 58 VFGKPLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAK 112
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ A E S D +GE LSGGQ+QRV +ARA+++DP +LLLDE +
Sbjct: 113 VDEALERVGLSELA-------DRQIGE----LSGGQQQRVLLARALVQDPDLLLLDEPFA 161
Query: 553 ALDSESGRMVQEALDRV-MINRTTVIVSHRL-SLIRNANIIAVIQQGKI 599
+D ++ + E L + T ++V+H L ++ + + ++ + +
Sbjct: 162 GVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRTVV 210
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 7e-30
Identities = 73/229 (31%), Positives = 116/229 (50%), Gaps = 26/229 (11%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M EV L S+ + RD+ G+ L+GE+G+GK+T++ ++ P S
Sbjct: 1 MLEVTDLTKSYGSKVQ----AVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDS 56
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFIS-------- 1118
G +T+DGV+ + +R+++GV+ E L++ T R N+ A NG
Sbjct: 57 GKVTIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRKEIKARIA 115
Query: 1119 ------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
L E D VGE S G KQ+VAIARA+V +P IL+LDE TS LDI + R
Sbjct: 116 ELSKRLQLLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRK 171
Query: 1173 VQDALDQVMVD-RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
D + Q+ + R + +H + ++ + V+ +G +V +GS E+L
Sbjct: 172 FHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEAL 220
|
Length = 245 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 119 bits (300), Expect = 8e-30
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 23/195 (11%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
E++ + SF +EV D+ L++ G+ +A++G SG GKST++ L+ P+SG
Sbjct: 5 EIEGVSKSF-----GGVEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEG----Y 1124
+ LDG + +G V QE L T+ N+A G
Sbjct: 60 VLLDGRPVTGP-----GPDIGYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKEL 114
Query: 1125 DTLVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
LVG G QLSGG +QRVAIARA+ PK+LLLDE ALD + +QD L
Sbjct: 115 LELVGLAGFEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGALDALTREELQDELL 174
Query: 1179 QVM--VDRTTLVVAH 1191
++ +T L+V H
Sbjct: 175 RLWEETRKTVLLVTH 189
|
Length = 248 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (299), Expect = 8e-30
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 12/234 (5%)
Query: 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAG 442
K++N Y ++ QIL L I + A +G SG GKST + R D G
Sbjct: 9 KNLNLWYGSK---QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKG 65
Query: 443 EVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEA 499
E+ IDG+++ + + +R K+G+V Q+P SI DN+AYG K H + + E
Sbjct: 66 ELDIDGIDVYSVDTNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEI 125
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
S L + L + + +LSGGQ+QR+ IARA+ P +LL+DE SALD +
Sbjct: 126 VEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVAT 185
Query: 560 RMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+++ + + N T ++V+H + + ++ +A Q G+IVE T E+ +NP
Sbjct: 186 NVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNP 239
|
Length = 251 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 1e-29
Identities = 79/239 (33%), Positives = 123/239 (51%), Gaps = 18/239 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IE +D+N Y DEQ L+ + IP + A++G SG GKST + I R D
Sbjct: 40 IEARDLNVFYG---DEQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAAR 96
Query: 440 QAGEVLIDGVNLKEFQLK--WIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAA 496
GE+ G N+ + + +R +IG+V Q+P SI DN+AYG K +I
Sbjct: 97 VEGELTFRGKNVYDADVDPVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDER 156
Query: 497 AEAA-NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
E + + + LD G+ LSGGQ+QR+ IARA+ DP ++L+DE SALD
Sbjct: 157 VEESLRRAALWDEVKDQLD----SSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALD 212
Query: 556 SESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAV-IQQGKIVEKGTHSELLENP 612
+ +++ ++ + T VIV+H + R ++ AV + G++VE ++ ENP
Sbjct: 213 PVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFENP 271
|
Length = 285 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 73/242 (30%), Positives = 122/242 (50%), Gaps = 26/242 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+ +++ + Q L+ L +P G++ AL+G SGSGKST++ +I P +G +
Sbjct: 1 IEIANISKRFG---SFQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT------HATKEEIQAAA 497
++G + + KIG V Q L ++RDNIA+G K ++
Sbjct: 58 RLNGQDATRVHAR--DRKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELL 115
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E P QLSGGQ+QRVA+ARA+ +P++LLLDE ALD++
Sbjct: 116 ELVQLEGLGDRYPN-----------QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 558 SGRMVQEALDRVM--INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPYG 614
+ ++ L ++ ++ TTV V+H + A+ I V+ GKI + G+ E+ ++P
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDHPAN 224
Query: 615 AY 616
+
Sbjct: 225 PF 226
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 2e-29
Identities = 67/232 (28%), Positives = 115/232 (49%), Gaps = 30/232 (12%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F V+ +Y + +L L I G+ + L+G SGSGK+T + ++ R +P+SG I
Sbjct: 1 IEFENVTKRYGGGK--KAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEI 58
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF------------- 1116
+DG +I++ LR+++G V Q+ LF T+ NIA + +
Sbjct: 59 FIDGEDIREQDPVELRRKIGYVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELL 118
Query: 1117 -ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
+ GL +LSGGQ+QRV +ARA+ +P +LL+DE ALD + +D
Sbjct: 119 ALVGLDPA--EFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGALD----PITRD 172
Query: 1176 ALDQVMVD------RTTLVVAHRL-STIKNAHLIAVVSQGMIVEKGSHESLI 1220
L + +T + V H + + A IA++ G IV+ G+ + ++
Sbjct: 173 QLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEIL 224
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 2e-29
Identities = 75/219 (34%), Positives = 112/219 (51%), Gaps = 26/219 (11%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VS YP + D+ L I G+ + L G SG+GK+T++ LL PS G +
Sbjct: 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQV 59
Query: 1071 TLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-TIRANIA---EMANANG-FIS---- 1118
+ G ++ +L Q+ LR+++GVV Q+ L D T+ N+A E+ I
Sbjct: 60 RIAGEDVNRLRGRQLPLLRRRIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVG 119
Query: 1119 ------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
GL+ D QLSGG++QRVAIARAIV P +LL DE T LD +
Sbjct: 120 AALRQVGLEHKADAFPE----QLSGGEQQRVAIARAIVNSPPLLLADEPTGNLDPDLSER 175
Query: 1173 VQDALDQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQGM 1209
+ D L ++ TT++VA H LS + AH + ++ G
Sbjct: 176 ILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-29
Identities = 69/205 (33%), Positives = 108/205 (52%), Gaps = 23/205 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE +V +YP L+G + I G LVG SG+GKST++ LI + P +G +
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 445 LIDGV---NLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGK--THATKEEIQ---- 494
++G +L+ + ++R KIG+V Q+ LL ++ +N+A+ T EI+
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
AA E SH + LP +LSGG++QRVAIARA++ P IL+ DE T L
Sbjct: 119 AALELVGLSHKHRALPA-----------ELSGGEQQRVAIARAIVNSPTILIADEPTGNL 167
Query: 555 DSESGRMVQEALDRVMINRTTVIVS 579
D ++ + L ++ TTV+V+
Sbjct: 168 DPDTTWEIMNLLKKINKAGTTVVVA 192
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (297), Expect = 2e-29
Identities = 69/270 (25%), Positives = 114/270 (42%), Gaps = 44/270 (16%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++++ SY RP +L L + G I AL+G +G+GKST++ I P +GE+
Sbjct: 5 IEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQ-------------EPVLLSSSIRDNIAYGKTHATKE 491
I G +++ + R +IG V Q + VLL + KE
Sbjct: 62 KIFGKPVRKRRK---RLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKE 118
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
++ A E +GE LSGGQKQRV +ARA+ ++P +LLLDE
Sbjct: 119 KVDEALERVGMEDLRDR-------QIGE----LSGGQKQRVLLARALAQNPDLLLLDEPF 167
Query: 552 SALDSESGRMVQEALDRVMI-----NRTTVIVSHRLSL-IRNANIIAVIQQGKI----VE 601
+ +D Q+ + ++ +T ++V+H L L + + + + + I E
Sbjct: 168 TGVDVAG----QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIASGPPE 223
Query: 602 KGTHSELLENPYGAYNRLIRLQETCKESEK 631
+ E LE +G
Sbjct: 224 EVLTEENLEKAFGGSLAHALAGYRHHHDHD 253
|
Length = 254 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 25/218 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
+ +D+ L+I PG+ +AL+G SG+GKST++ L +P+SG + +DG +I KL+ K LR
Sbjct: 15 KALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALR 74
Query: 1087 Q---QMGVVSQEPVLFSD-TIRANI-----AEMANANGFISGLQE-------------GY 1124
Q Q+G++ Q+ L ++ N+ + + G
Sbjct: 75 QLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGL 134
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+R QLSGGQ+QRVAIARA++++PK++L DE ++LD S R V D L ++ +
Sbjct: 135 LDKAYQRADQLSGGQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREE 194
Query: 1185 --TTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESL 1219
T +V H++ + A I + G IV G L
Sbjct: 195 GITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAEL 232
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 3e-29
Identities = 63/203 (31%), Positives = 108/203 (53%), Gaps = 20/203 (9%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LK+++ + D+ IL+ L I G + A++G SGSGKST++++I +G+V +
Sbjct: 1 LKNISKKFG---DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYL 57
Query: 447 DGVNLKEFQ----LKWIREKIGLVSQEPVLLSS-SIRDNIAYG---KTHATKEEIQAAAE 498
+G K+ REK+G + Q L+ + ++ +N+ G K + KE+ + E
Sbjct: 58 NGQETPPLNSKKASKFRREKLGYLFQNFALIENETVEENLDLGLKYKKLSKKEKREKKKE 117
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A L L + E LSGG++QRVA+ARA++K P ++L DE T +LD ++
Sbjct: 118 ALEKV----GLNLKLKQKIYE----LSGGEQQRVALARAILKPPPLILADEPTGSLDPKN 169
Query: 559 GRMVQEAL-DRVMINRTTVIVSH 580
V + L + +T +IV+H
Sbjct: 170 RDEVLDLLLELNDEGKTIIIVTH 192
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-29
Identities = 78/238 (32%), Positives = 126/238 (52%), Gaps = 24/238 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++D++F Y + + L G L IP G+ AL+G +G+GKST++ + Y PQ G V
Sbjct: 5 IEVEDLHFRY--KDGTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHA--TKEEIQAAAEAA 500
+ G + KW+R K+GLV Q+P + SS++ D++A+G + K+E++ E A
Sbjct: 63 KVMGREVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEA 122
Query: 501 ----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
F P LS GQK+RVAIA + DP +++LDE + LD
Sbjct: 123 LKAVRMWDFRDKPPY-----------HLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDP 171
Query: 557 ESGRMVQEALDRVMINRTTVIVS-HRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ E LDR+ TVIV+ H + L A+ + V+++G+++ +G LL +
Sbjct: 172 RGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD-KSLLTDE 228
|
Length = 274 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 4e-29
Identities = 77/249 (30%), Positives = 131/249 (52%), Gaps = 33/249 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++D++ Y + ++L G L G + +++G+SGSGKST + I P AG +
Sbjct: 7 LEVEDLHKRYG---EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSI 63
Query: 445 LIDGVNLK-------------EFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATK 490
++G ++ + QL+ +R ++G+V Q L S ++ +N+ H
Sbjct: 64 RVNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLG 123
Query: 491 EEIQAAAEA-ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ AEA A ++ + G+ + LSGGQ+QRVAIARA+ +P ++L DE
Sbjct: 124 ---VSKAEAIERAEKYLAKV--GIAEKADAYPAHLSGGQQQRVAIARALAMEPEVMLFDE 178
Query: 550 ATSALDSESGRMVQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
TSALD E +V E L +VM + RT V+V+H + R+ ++ + + QGKI E+G
Sbjct: 179 PTSALDPE---LVGEVL-KVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEG 234
Query: 604 THSELLENP 612
++ NP
Sbjct: 235 PPEQVFGNP 243
|
Length = 256 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 6e-29
Identities = 75/240 (31%), Positives = 125/240 (52%), Gaps = 19/240 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IE++++N + D IL L IP ++ AL+G SG GKST I + R D
Sbjct: 4 IEVENLNTYFD---DAHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFR 60
Query: 440 QAGEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEE---I 493
G + +DGV++ + + + R+K+G+V Q+P SI DN+AYG + H +E
Sbjct: 61 HEGHIYLDGVDIYDPAVDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIE 120
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+ E+ A+ + LD + + LSGGQ+QR+ IAR + P ++L+DE SA
Sbjct: 121 ERVEESLKAAALWDEVKDKLDKS----ALGLSGGQQQRLCIARTIAVSPEVILMDEPCSA 176
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
LD S +++ + ++ + T VIV+H + R + + G+I+E G ++ NP
Sbjct: 177 LDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINP 236
|
Length = 250 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 6e-29
Identities = 76/243 (31%), Positives = 122/243 (50%), Gaps = 25/243 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQ-- 440
I+++++NF Y L L I + A +G SG GKST++ R Y+ P+
Sbjct: 14 IQVRNLNFYYG---KFHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR 70
Query: 441 -AGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATK------- 490
GE+L+DG N+ + + +R K+G+V Q+P SI DNIA+G K
Sbjct: 71 AEGEILLDGENILTPKQDIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMD 130
Query: 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
E ++ A A + +K+ + + G LSGGQ+QR+ IAR + P +LLLDE
Sbjct: 131 ERVEWALTKAALWNEVKD-------KLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEP 183
Query: 551 TSALDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELL 609
SALD S ++E + + + T VIV+H + R ++ A + G+++E G +
Sbjct: 184 CSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIF 243
Query: 610 ENP 612
P
Sbjct: 244 TKP 246
|
Length = 260 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-29
Identities = 62/219 (28%), Positives = 107/219 (48%), Gaps = 18/219 (8%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
+++++FSY + IL+ L + G I AL G +G+GK+T+ ++ +G +L
Sbjct: 1 RIENISFSYKKGTE--ILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSIL 58
Query: 446 IDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
++G +K + R+ IG V Q+ L + S+R+ + G + A A
Sbjct: 59 LNGKPIKAKER---RKSIGYVMQDVDYQLFTDSVREELLLGLK-------ELDAGNEQAE 108
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+K+L L H + LSGGQKQR+AIA A++ +L+ DE TS LD ++ V
Sbjct: 109 TVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVG 166
Query: 564 EALDRVMINRTTVIV-SHRLSLIRN-ANIIAVIQQGKIV 600
E + + VIV +H + + + ++ G IV
Sbjct: 167 ELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 7e-29
Identities = 58/226 (25%), Positives = 120/226 (53%), Gaps = 22/226 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L+++ Y + + L+G L + G + L+G +G+GK+T++ ++ P +G +
Sbjct: 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTI 56
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANAS 503
IDG ++ + Q + +R +IG + QE + + ++R+ + Y A + +
Sbjct: 57 RIDGQDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDY----------IAWLKGIPSK 105
Query: 504 HFIKNLPQGLD-TNVGEHGI----QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
+ + L+ N+G+ LSGG ++RV IA+A++ DP IL++DE T+ LD E
Sbjct: 106 EVKARVDEVLELVNLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEE 165
Query: 559 GRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
+ L + +R ++ +H + + + N +AV+ +GK+V +G
Sbjct: 166 RIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 7e-29
Identities = 46/129 (35%), Positives = 70/129 (54%), Gaps = 13/129 (10%)
Query: 427 STVISLIQRFYDPQAGEVLIDGVNLKEF-QLKWIREKIGLVSQEPVLLSS-SIRDNIAYG 484
ST++ LI P +G +L+DG + K +R++IG+V Q+P L ++R+N+ +G
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 485 -KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543
+ + A E F+ P LSGGQKQRVAIARA++K P+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREP----------VGTLSGGQKQRVAIARALLKKPK 110
Query: 544 ILLLDEATS 552
+LLLDE T+
Sbjct: 111 LLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-28
Identities = 68/219 (31%), Positives = 110/219 (50%), Gaps = 23/219 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QK 1079
E +++ L IP + AL+G SG GKST++ L R D P G + DG +I +K
Sbjct: 15 EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKK 74
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS---------------GLQEGY 1124
+ V LR+++G+V Q+P F +I NIA +G L +
Sbjct: 75 IDVVELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEV 134
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + + LSGGQ+QR+ IARA+ EP++LLLDE TSALD + +++ + ++
Sbjct: 135 KDRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKY 194
Query: 1185 TTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
T ++V H + + + A G +VE G E + +
Sbjct: 195 TIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTN 233
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 71/203 (34%), Positives = 108/203 (53%), Gaps = 17/203 (8%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
D+ L I G+ + L+G SG GK+T++ ++ F PSSG I LDG +I + + ++
Sbjct: 20 AVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KR 77
Query: 1088 QMGVVSQEPVLFSD-TIRANIA-----EMANANGFISGLQEGYDTLVG-----ERGV-QL 1135
+G+V Q LF T+ N+A I E LVG +R QL
Sbjct: 78 PIGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQL 137
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAH-R 1192
SGGQ+QRVA+ARA+V EPK+LLLDE SALD + ++ L ++ + T + V H +
Sbjct: 138 SGGQQQRVALARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQ 197
Query: 1193 LSTIKNAHLIAVVSQGMIVEKGS 1215
+ + IAV++ G I + G+
Sbjct: 198 EEALAMSDRIAVMNDGRIEQVGT 220
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 71/210 (33%), Positives = 108/210 (51%), Gaps = 25/210 (11%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---QVKWLRQ 1087
D+ L I G+ +A++G SG+GKST++ L DP+SG I +GV+I KL +++ LR+
Sbjct: 22 DVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLRR 81
Query: 1088 QMGVVSQEP--VLFSDTIRANIAEMANANGFISGL---------QEGYDTL--VG----- 1129
+G++ Q+ V + + L + D L VG
Sbjct: 82 DIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDKA 141
Query: 1130 -ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TT 1186
+R LSGGQ+QRVAIARA+V++PKI+L DE ++LD ES + V D L + + T
Sbjct: 142 YQRASTLSGGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITV 201
Query: 1187 LVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+V H++ K A I + G IV G
Sbjct: 202 IVNLHQVDLAKKYADRIIGLKAGRIVFDGP 231
|
Length = 258 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 116 bits (293), Expect = 1e-28
Identities = 80/252 (31%), Positives = 130/252 (51%), Gaps = 33/252 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+K++ F Y ++ LN + G +++G +GSGKST + LI + ++G++
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG------KTHATKEEIQAA 496
+IDG L E + IR KIG+V Q P + +++ D++A+G KE + A
Sbjct: 65 IIDGDLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEA 124
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
E F + P +LSGGQKQRVAIA A+ P+I++LDEATS LD
Sbjct: 125 LELVGMQDFKEREPA-----------RLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDP 173
Query: 557 ESGRM-----VQEALDRVMINRTTVI-VSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
E GR+ ++ D + TVI ++H L + ++ + V++ G++ T EL
Sbjct: 174 E-GRLELIKTIKGIRDD---YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPREL-- 227
Query: 611 NPYGAYNRLIRL 622
+ N L++L
Sbjct: 228 --FSRGNDLLQL 237
|
Length = 279 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-28
Identities = 68/229 (29%), Positives = 116/229 (50%), Gaps = 14/229 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+ ++F Y AR L+ + G AL+G +G+GKST+ SL+ R Y Q G++
Sbjct: 2 LEVAGLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVL-LSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
+ G +L+ + ++G+V Q+P L L S+R N+ Y HA + A A +
Sbjct: 59 SVAGHDLRRAPRAALA-RLGVVFQQPTLDLDLSVRQNLRY---HAALHGLSRAEARARIA 114
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+ L GL + +L+GG ++RV IARA++ P +LLLDE T LD S +
Sbjct: 115 ELLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAIT 172
Query: 564 EALDRVMINRTTVIV---SHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609
+ R + + V +H + I + + V+ +G+++ G +EL
Sbjct: 173 AHV-RALARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELR 220
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 81/243 (33%), Positives = 122/243 (50%), Gaps = 25/243 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
I+ +DVNF Y D L G + I ++ A +G SG GKST + L R D P
Sbjct: 4 IDARDVNFWYG---DFHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATR 60
Query: 442 --GEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEE---- 492
GE+ IDG N+ K Q+ +R+ +G+V Q P SI +N+AYG + + K+
Sbjct: 61 LEGEIRIDGRNIYDKGVQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR 120
Query: 493 --IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
++ + A +K+ + E LSGGQ+QR+ IARAM P +LL+DE
Sbjct: 121 QRVEETLKGAALWDEVKD-------KLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEP 173
Query: 551 TSALDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELL 609
SALD S V+E + + + T VIV+H + R ++ A G++VE ++
Sbjct: 174 ASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIF 233
Query: 610 ENP 612
NP
Sbjct: 234 TNP 236
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 70/236 (29%), Positives = 119/236 (50%), Gaps = 12/236 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-- 442
+++++ Y + Q L L IP + AL+G SG GKST++ + R D G
Sbjct: 4 FNIENLDLFYG---ENQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK 60
Query: 443 ---EVLIDGVNL-KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAA 497
++ +DG ++ + +R K+G+V Q+P SI +N+AYG + K++ +
Sbjct: 61 ITGKLTMDGEDIYGNIDVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDK-KVLD 119
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E S L + + H LSGGQ+QR+ IAR + +P ++L+DE TSALD
Sbjct: 120 EVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPI 179
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ ++E ++ + N T VIV+H + R ++ A G++VE + NP
Sbjct: 180 ATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSNP 235
|
Length = 249 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 114 bits (287), Expect = 3e-28
Identities = 75/217 (34%), Positives = 119/217 (54%), Gaps = 13/217 (5%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+ L IP+G + AL+G SGSGK+T++ LI P +G +L G ++ ++E+
Sbjct: 18 LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGG---EDATDVPVQER 74
Query: 463 -IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520
+G V Q L ++ DN+A+G + E AE H + L Q LD +
Sbjct: 75 NVGFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRY 133
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS----ESGRMVQEALDRVMINRTTV 576
QLSGGQ+QRVA+ARA+ +P++LLLDE ALD+ E R ++ D + + TTV
Sbjct: 134 PAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV--TTV 191
Query: 577 IVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
V+H + A+ + V+ +G+I + GT E+ ++P
Sbjct: 192 FVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDHP 228
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 3e-28
Identities = 86/249 (34%), Positives = 127/249 (51%), Gaps = 33/249 (13%)
Query: 1010 EVQFLRVSFKYPT---RP---HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
EV+ LRV F R H+ + LT+ G+T+ LVGESGSGKST+ L R
Sbjct: 278 EVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL- 336
Query: 1064 DPSSGHITLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-----TIRANIAEMANANG 1115
PS G I DG +I L +++ LR++M VV Q+P + T+ I E +
Sbjct: 337 IPSQGEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP--YGSLSPRMTVGQIIEEGLRVHE 394
Query: 1116 -----------FISGLQE-GYDTLVGER-GVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162
I L+E G D R + SGGQ+QR+AIARA++ +P+++LLDE T
Sbjct: 395 PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIARALILKPELILLDEPT 454
Query: 1163 SALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
SALD + V D L + + L ++H L+ ++ H + V+ G IVE+G E++
Sbjct: 455 SALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQGPTEAV 514
Query: 1220 ISTKNGIYT 1228
+ YT
Sbjct: 515 FANPQHEYT 523
|
Length = 534 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 4e-28
Identities = 70/218 (32%), Positives = 113/218 (51%), Gaps = 25/218 (11%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
+SF+Y R D+ T+ PG+ +AL+G +G+GKST+ SLL R Y G I++ G
Sbjct: 6 GLSFRYGARR---ALDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAG 62
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANI---AEM-----ANANGFIS------G 1119
++++ L + +GVV Q+P L D ++R N+ A + A A I+ G
Sbjct: 63 HDLRRAPRAALAR-LGVVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARARIAELLARLG 121
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
L E D V E L+GG ++RV IARA++ P +LLLDE T LD S + +
Sbjct: 122 LAERADDKVRE----LNGGHRRRVEIARALLHRPALLLLDEPTVGLDPASRAAITAHVRA 177
Query: 1180 VMVDR--TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
+ D+ + L H + I+ + V+ +G ++ G+
Sbjct: 178 LARDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGA 215
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 4e-28
Identities = 81/220 (36%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE----KI 463
L I G I ++G SGSGKST++ L+ R +P G+VLIDGV++ + +RE KI
Sbjct: 49 LAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKI 108
Query: 464 GLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQ-GLDTNVGEHG 521
+V Q L+ ++ DN A+G E+ + L Q GL+ +
Sbjct: 109 AMVFQSFALMPHMTVLDNTAFGM------ELAGINAEERREKALDALRQVGLENYAHSYP 162
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVS 579
+LSGG +QRV +ARA+ +P ILL+DEA SALD +Q+ L ++ RT V +S
Sbjct: 163 DELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFIS 222
Query: 580 HRL-SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
H L +R + IA++Q G++V+ GT E+L NP Y R
Sbjct: 223 HDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYVR 262
|
Length = 400 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (286), Expect = 4e-28
Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 19/240 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
+E K++N Y ++Q LN L I I AL+G SG GKST + + R D
Sbjct: 5 MESKNLNLWYG---EKQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVK 61
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKE--EIQ 494
GEVL+DG N+ K+ + +R+++G+V Q+P SI DN+AYG + H K+ E+
Sbjct: 62 IEGEVLLDGKNIYDKDVDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELD 121
Query: 495 AAAE-AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
E A + + L + ++LSGGQ+QR+ IAR + P ++L+DE TSA
Sbjct: 122 KIVEWALKKAALWDEVKDDLKKS----ALKLSGGQQQRLCIARTIAVKPDVILMDEPTSA 177
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
LD S +++ + + T VIV+H + R ++ A G ++E ++ P
Sbjct: 178 LDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLEP 237
|
Length = 251 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 4e-28
Identities = 59/172 (34%), Positives = 94/172 (54%), Gaps = 22/172 (12%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+++ L I PG+ +A++G SG+GKST++ + R +PSSG I L+G +I KL+ K LR+
Sbjct: 17 ALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRK 76
Query: 1088 ---QMGVVSQEPVLFSD-TIRANIAEMA-NANGFISGL---------QEGYDTL--VG-- 1129
++G++ Q L T+ N+ L + L VG
Sbjct: 77 LRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLA 136
Query: 1130 ----ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
+R QLSGGQ+QRVAIARA+ ++P ++L DE ++LD ++ + V D L
Sbjct: 137 DKAYQRADQLSGGQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYL 188
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 6e-28
Identities = 82/246 (33%), Positives = 135/246 (54%), Gaps = 25/246 (10%)
Query: 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--P 439
IE++D+ S+ ++L+G L IP+ TI AL+G SGSGKST++ + R + P
Sbjct: 1 MNKIEIRDLKVSFG---QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYP 57
Query: 440 QA---GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG----KTHATKE 491
+A GEV +DG ++ + + +R ++ +V Q P + + SI +N+A G + +K+
Sbjct: 58 EARVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKK 117
Query: 492 EIQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLL 547
E+Q A E A +K+ LD G +LSGGQ+QR+ IARA+ P +LL
Sbjct: 118 ELQERVRWALEKAQLWDEVKDR---LDAPAG----KLSGGQQQRLCIARALAFQPEVLLA 170
Query: 548 DEATSALDSESGRMVQEALDRVMINRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHS 606
DE T+ LD E+ ++ + + T V+V+H R ++ +A + +G+IVE G
Sbjct: 171 DEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTR 230
Query: 607 ELLENP 612
E+ NP
Sbjct: 231 EVFTNP 236
|
Length = 250 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 119 bits (301), Expect = 7e-28
Identities = 66/248 (26%), Positives = 119/248 (47%), Gaps = 27/248 (10%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP---- 439
+E++++ + + + G I +VG SGSGKST+ +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRI 65
Query: 440 QAGEVLIDG---VNLKEFQLKWIR-EKIGLVSQEPVLLSS-----SIRDNIAYG-KTHAT 489
+GEV++DG + L E +++ +R ++I ++ Q+P ++S +I D I + H
Sbjct: 66 TSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDP--MTSLNPVMTIGDQIREALRLHGK 123
Query: 490 KEEIQAAAEAANASHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLL 547
+A A ++ LP + H QLSGG +QRV IA A+ P++L+
Sbjct: 124 GSRAEARKRAVEL---LEQVGLPDPERRDRYPH--QLSGGMRQRVMIAMALALKPKLLIA 178
Query: 548 DEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604
DE T+ALD + + + L + + ++H L ++ A+ + V+ +G+IVE G
Sbjct: 179 DEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238
Query: 605 HSELLENP 612
E+L NP
Sbjct: 239 TEEILSNP 246
|
Length = 539 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (283), Expect = 7e-28
Identities = 75/221 (33%), Positives = 117/221 (52%), Gaps = 11/221 (4%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA---GEVLIDGVNLKEFQL 456
+Q L + I I AL+G SG GKST + R D A G V I+G ++K +
Sbjct: 15 KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV 74
Query: 457 KWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHA---TKEEIQAAAEAANASHFIKNLPQG 512
+R+ +G+V Q+P + SI +NI+Y K H K+E +A L +
Sbjct: 75 VALRKNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQK---VGLFEE 131
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572
+ + ++ + LSGGQ+QR+ IARA+ P++LLLDE TSALD S +++E L + N
Sbjct: 132 VKDKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHN 191
Query: 573 RTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTHSELLENP 612
+ ++V+H + R A+ A G+++E G E ENP
Sbjct: 192 LSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232
|
Length = 246 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 8e-28
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 23/187 (12%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-----GHITLDGVEI--QK 1079
+D+ L IP K AL+G SG GKST++ L R D G + LDG I K
Sbjct: 21 HALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPK 80
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISG---------LQ------EGY 1124
+ V LR+++G+V Q+P F +I N+A +G L+ E
Sbjct: 81 VDVVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVK 140
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
D L + + LSGGQ+QR+ IARA+ +P++LL+DE TSALD S +++ + ++
Sbjct: 141 DRL-HKSALGLSGGQQQRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKY 199
Query: 1185 TTLVVAH 1191
T ++V H
Sbjct: 200 TIVIVTH 206
|
Length = 253 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 9e-28
Identities = 76/234 (32%), Positives = 118/234 (50%), Gaps = 33/234 (14%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-----EVLIDG---VN 450
+ +L+G L + G + A++G SGSGK+T++ I P+AG ++ ID ++
Sbjct: 15 GQTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLS 74
Query: 451 LKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
++ ++ +R+ +G V Q L ++ +NI G E + A A
Sbjct: 75 QQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARE------- 127
Query: 510 PQGLDTNVGEHGIQ------LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
L VG G + LSGGQ+QRVAIARA+ P ++L DE TSALD E +V
Sbjct: 128 ---LLAKVGLAGKETSYPRRLSGGQQQRVAIARALAMRPEVILFDEPTSALDPE---LVG 181
Query: 564 EALDRVMI----NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
E L+ + RT VIV+H +S R+ A+ + QG+IVE+G L +P
Sbjct: 182 EVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFADP 235
|
Length = 250 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 1e-27
Identities = 80/241 (33%), Positives = 129/241 (53%), Gaps = 21/241 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I + + F++ AR LNG IP G + A+VG G GKS+++S + D G V
Sbjct: 637 ITVHNATFTW-ARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHV 695
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEE-IQAAAEAANAS 503
+ G + V Q+ + + S+R+NI +G A E+ Q EA
Sbjct: 696 HMKG-------------SVAYVPQQAWIQNDSLRENILFG--KALNEKYYQQVLEACALL 740
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
++ LP G T +GE G+ LSGGQKQRV++ARA+ + I L D+ SA+D+ G+ +
Sbjct: 741 PDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHIF 800
Query: 564 EAL---DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
E + + V+ N+T ++V+H +S + ++I V+ GKI E G++ ELL+ GA+ +
Sbjct: 801 EHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQRD-GAFAEFL 859
Query: 621 R 621
R
Sbjct: 860 R 860
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 1e-27
Identities = 61/216 (28%), Positives = 115/216 (53%), Gaps = 25/216 (11%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
++ +Y + + LT+ PG L+G +G+GK+T++ +L PSSG I +DG
Sbjct: 5 NLTKRYGKK---RALDGVSLTLGPGMY-GLLGPNGAGKTTLMRILATLTPPSSGTIRIDG 60
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFIS--------------G 1119
++ K Q + LR+++G + QE ++ + T+R + +A G S
Sbjct: 61 QDVLK-QPQKLRRRIGYLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVN 119
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
L + +G LSGG ++RV IA+A+V +P IL++DE T+ LD E ++ L +
Sbjct: 120 LGDRAKKKIG----SLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPEERIRFRNLLSE 175
Query: 1180 VMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
+ DR ++ H + +++ + +AV+++G +V +G
Sbjct: 176 LGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 69/238 (28%), Positives = 113/238 (47%), Gaps = 44/238 (18%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+EL++V + L+ L I +G L+G SG GK+T + +I +P +G +
Sbjct: 1 VELENVTKRFGNVT---ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQA----AA 497
I G ++ + K I +V Q L ++ DNIA+G K+EI A
Sbjct: 58 YIGGRDVTDLPPK--DRDIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVA 115
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD-- 555
E H + P+ QLSGGQ+QRVA+ RA++++P++ L+DE S LD
Sbjct: 116 ELLQIEHLLDRKPK-----------QLSGGQRQRVALGRAIVREPKVFLMDEPLSNLDAK 164
Query: 556 ------SESGRMVQEALDRVMINRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKG 603
+E R+ Q + TT+ V+H +++ A+ IAV+ G+I + G
Sbjct: 165 LRVQMRAELKRLQQR------LGTTTIYVTHDQVEAMTM---ADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 2e-27
Identities = 69/247 (27%), Positives = 123/247 (49%), Gaps = 35/247 (14%)
Query: 1003 TLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062
++VM +V+ VSF YP +++ I G+ +A++G +GSGKST+ +L
Sbjct: 2 KNKSVMIKVE--NVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGL 58
Query: 1063 YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP------------VLFS--------DT 1102
P SG I +DG+ I K +K +R+++G++ Q P + F
Sbjct: 59 LKPQSGEIKIDGITISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKK 118
Query: 1103 IRANIAEMANANGFISGLQEGYDTLVGERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEA 1161
++ I ++A G L ++ Q LSGGQKQRVAIA + P+I++ DE+
Sbjct: 119 MKDIIDDLAKKVGMEDYL---------DKEPQNLSGGQKQRVAIASVLALNPEIIIFDES 169
Query: 1162 TSALDIESERVVQDALDQVMVDRT-TLV-VAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219
TS LD + +R ++ + + R TL+ + H + A + V S+G ++ +G + +
Sbjct: 170 TSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEI 229
Query: 1220 ISTKNGI 1226
++ K +
Sbjct: 230 LNNKEIL 236
|
Length = 271 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-27
Identities = 70/211 (33%), Positives = 117/211 (55%), Gaps = 25/211 (11%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085
I+ ++ L +P G+ ++G SG+GKST+I + P+SG + +DG ++ L L
Sbjct: 18 IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL 77
Query: 1086 ---RQQMGVVSQE-PVLFSDTIRANIA---EMAN---------ANGFIS--GLQEGYDTL 1127
R+Q+G++ Q +L S T+ N+A E+ N ++ GL + +D+
Sbjct: 78 TKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHDSY 137
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV--MVDRT 1185
LSGGQKQRVAIARA+ PK+LL DEATSALD + + + + L ++ + T
Sbjct: 138 PS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLT 193
Query: 1186 TLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
L++ H + +K +AV+S G ++E+G+
Sbjct: 194 ILLITHEMDVVKRICDCVAVISNGELIEQGT 224
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-27
Identities = 77/244 (31%), Positives = 125/244 (51%), Gaps = 38/244 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+EL+ ++ S+ +++++ L I NG L+G SG GK+TV+ LI F P +G +
Sbjct: 15 VELRGISKSFD---GKEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRI 71
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG----KTHATKEEIQAAAEA 499
++DG ++ + + V Q L ++ +N+A+G KT EI
Sbjct: 72 MLDGQDIT--HVPAENRHVNTVFQSYALFPHMTVFENVAFGLRMQKT--PAAEITPRVME 127
Query: 500 ANA----SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A F + P QLSGGQ+QRVAIARA++ P++LLLDE+ SALD
Sbjct: 128 ALRMVQLEEFAQRKPH-----------QLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
Query: 556 SESGRMVQ---EALDRVMINRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ + +Q +AL R + T V V+H L++ ++ I V++ G+I + GT E+
Sbjct: 177 YKLRKQMQNELKALQR-KLGITFVFVTHDQEEALTM---SDRIVVMRDGRIEQDGTPREI 232
Query: 609 LENP 612
E P
Sbjct: 233 YEEP 236
|
Length = 375 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 2e-27
Identities = 76/243 (31%), Positives = 121/243 (49%), Gaps = 25/243 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
+E++++N Y D+Q L + IP + A +G SG GKST++ R D
Sbjct: 26 LEVRNLNLFYG---DKQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCR 82
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-------KTHATK 490
GE+ +DG N+ K+ + +R ++G+V Q P SI +N+ YG
Sbjct: 83 IEGEIRLDGQNIYDKKVDVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLD 142
Query: 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
E ++ + A +K+ + E+ LSGGQ+QR+ IARA+ +P +LLLDE
Sbjct: 143 EAVERSLRGAALWDEVKD-------RLHENAFGLSGGQQQRLVIARAIAIEPEVLLLDEP 195
Query: 551 TSALDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELL 609
TSALD S ++E + + T VIV+H + R ++ A + GK+VE G L
Sbjct: 196 TSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLF 255
Query: 610 ENP 612
+P
Sbjct: 256 TSP 258
|
Length = 272 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 113 bits (286), Expect = 3e-27
Identities = 69/230 (30%), Positives = 117/230 (50%), Gaps = 35/230 (15%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M E++ V + + EV +D+ L I G+ + L+G SG GKST++ ++ +P+S
Sbjct: 1 MAELELKNVRKSFGS---FEVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTS 57
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIA------------------ 1108
G I +DG ++ L + ++ + +V Q L+ T+ NIA
Sbjct: 58 GEILIDGRDVTDLPPE--KRGIAMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVK 115
Query: 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
E+A + GL+ L+ + +QLSGGQ+QRVA+ARA+V++PK+ LLDE S LD +
Sbjct: 116 EVAK----LLGLEH----LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPLSNLDAK 167
Query: 1169 SERVVQDAL--DQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+++ + + TT+ V H A I V++ G I + G+
Sbjct: 168 LRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGT 217
|
Length = 338 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 3e-27
Identities = 63/196 (32%), Positives = 106/196 (54%), Gaps = 20/196 (10%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ--- 1081
+ DL LTI GK A++GESGSGKST+++++ SG + L+G E L
Sbjct: 10 DKVILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKK 69
Query: 1082 -VKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISG---LQEGYDTL--VG----- 1129
K+ R+++G + Q L + T+ N+ ++ +S ++ + L VG
Sbjct: 70 ASKFRREKLGYLFQNFALIENETVEENL-DLGLKYKKLSKKEKREKKKEALEKVGLNLKL 128
Query: 1130 ERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD--RTT 1186
++ + +LSGG++QRVA+ARAI+K P ++L DE T +LD ++ V D L + + D +T
Sbjct: 129 KQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLE-LNDEGKTI 187
Query: 1187 LVVAHRLSTIKNAHLI 1202
++V H K A +
Sbjct: 188 IIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 3e-27
Identities = 76/245 (31%), Positives = 134/245 (54%), Gaps = 34/245 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+++++ YP +Q L L I G A++G SG+GKST++ I R +P +G +
Sbjct: 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSI 59
Query: 445 LIDG---VNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHA-----------T 489
L++G L+ +L+ +R +IG++ Q L+ ++ +N+ +G+ +
Sbjct: 60 LLEGTDITKLRGKKLRKLRRRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFS 119
Query: 490 KEEIQAAAEAANASHFIKNLPQ-GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLD 548
+E+ + A A L + GL + QLSGGQ+QRVAIARA+ + P ++L D
Sbjct: 120 EEDKERALSA---------LERVGLADKAYQRADQLSGGQQQRVAIARALAQQPDLILAD 170
Query: 549 EATSALDSESGRMVQEALDRVMINRT---TVIVS-HRLSLIRN-ANIIAVIQQGKIVEKG 603
E ++LD ++ + V + L R IN+ TVI++ H++ L + A+ I ++ G+IV G
Sbjct: 171 EPIASLDPKTSKQVMDYLKR--INKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228
Query: 604 THSEL 608
SEL
Sbjct: 229 APSEL 233
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 6e-27
Identities = 67/210 (31%), Positives = 101/210 (48%), Gaps = 32/210 (15%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ L I G+ L+G SG GK+T++ L+ F P+SG I LDG +I L ++
Sbjct: 15 ALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KR 72
Query: 1088 QMGVVSQEPVLF-------------------SDTIRANIAEMANANGFISGLQEGYDTLV 1128
+ V Q LF I+ +AE + + L+
Sbjct: 73 PVNTVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALD----LVQLEG----YA 124
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTT 1186
+ QLSGGQ+QRVAIARA+V EPK+LLLDE ALD++ + +Q L Q + T
Sbjct: 125 NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITF 184
Query: 1187 LVVAHRLS-TIKNAHLIAVVSQGMIVEKGS 1215
+ V H + + IAV+++G I + G+
Sbjct: 185 VFVTHDQEEALTMSDRIAVMNKGKIQQIGT 214
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 6e-27
Identities = 64/208 (30%), Positives = 107/208 (51%), Gaps = 24/208 (11%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F+ V+ YP + ++I G+ + LVG SG+GKST++ L+ + P+SG I
Sbjct: 1 IEFINVTKTYP--NGTAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTI 58
Query: 1071 TLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-TIRANIA--------------EMAN 1112
++G ++ L + +LR+++GVV Q+ L D + N+A +
Sbjct: 59 RVNGQDVSDLRGRAIPYLRRKIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVP 118
Query: 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
A + GL + L +LSGG++QRVAIARAIV P IL+ DE T LD ++
Sbjct: 119 AALELVGLSHKHRAL----PAELSGGEQQRVAIARAIVNSPTILIADEPTGNLDPDTTWE 174
Query: 1173 VQDALDQVMVDRTTLVVAHRLSTIKNAH 1200
+ + L ++ TT+VVA + +
Sbjct: 175 IMNLLKKINKAGTTVVVATHAKELVDTT 202
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 6e-27
Identities = 72/210 (34%), Positives = 112/210 (53%), Gaps = 18/210 (8%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK---EFQLK 457
Q+L L I G I L G SGSGK+T+++LI Q G + + G L E +L
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 458 WIREKIGLVSQEPVLLSS-SIRDNIAYG---KTHATKEEIQAAAEAANASHFIKNLPQ-G 512
+R IG + Q LL + R N+ + + + +E + A A L G
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAM--------LEAVG 130
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572
L ++ + LSGGQKQRVAIARA++ P+++L DE T+ALDS+SGR V E + ++
Sbjct: 131 LGDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLARE 190
Query: 573 R--TTVIVSHRLSLIRNANIIAVIQQGKIV 600
+ T +IV+H ++ A+ I ++ GK++
Sbjct: 191 QGCTILIVTHDNRILDVADRIVHMEDGKLL 220
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 7e-27
Identities = 80/245 (32%), Positives = 124/245 (50%), Gaps = 28/245 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--- 441
+ +DV+ Y ++Q L L IP T+ A +G SG GKST + + R D
Sbjct: 20 MRARDVSVFYG---EKQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCR 76
Query: 442 --GEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYG-KTH---ATKEEI 493
G++ +DG ++ + +L + R ++G+V Q+P SI +N+AYG + H +K E+
Sbjct: 77 VTGKITLDGEDIYDPRLDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAEL 136
Query: 494 QAAAEAANASHFIKNLPQ-GLDTNV----GEHGIQLSGGQKQRVAIARAMIKDPRILLLD 548
E +L + GL V E G LSGGQ+QR+ IARA+ P ++L+D
Sbjct: 137 DEIVE--------TSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMD 188
Query: 549 EATSALDSESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSE 607
E SALD + V+E +D + N T VIV+H + R + A G +VE G +
Sbjct: 189 EPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEK 248
Query: 608 LLENP 612
+ NP
Sbjct: 249 MFTNP 253
|
Length = 267 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 7e-27
Identities = 64/204 (31%), Positives = 101/204 (49%), Gaps = 26/204 (12%)
Query: 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL-- 451
YP P+ +L G G + AL+G +G+GKST++ + PQ+G VLIDG L
Sbjct: 1 YPGGPE--VLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 452 -KEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG------KTHATKEEIQAAAEAANA 502
++ L+ R+++GLV Q+P L ++ + ++A+G + ++ A A A
Sbjct: 59 SRKGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
S + LSGG+K+RVAIA A+ P +LLLDE T+ LD +
Sbjct: 118 SGLRERPTH-----------CLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQM 166
Query: 563 QEALDRVMINRTTVIVS-HRLSLI 585
L R+ TV++S H + L
Sbjct: 167 LAILRRLRAEGMTVVISTHDVDLA 190
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-27
Identities = 73/236 (30%), Positives = 116/236 (49%), Gaps = 11/236 (4%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-- 442
I+++ VNF Y Q+L + P I A++G SG GKST++ + R D +G
Sbjct: 5 IKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGAR 61
Query: 443 ---EVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
VL+D N+ L + R+++G+V Q+P SI DN+A+G
Sbjct: 62 LEGAVLLDNENIYSPNLDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLD 121
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E S L + N+ + G+ LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 122 EVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPV 181
Query: 558 SGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
S ++E + + N T IV+H + R ++ + G +VE G E+ P
Sbjct: 182 STMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSRP 237
|
Length = 251 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 8e-27
Identities = 71/236 (30%), Positives = 115/236 (48%), Gaps = 11/236 (4%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--- 441
+ KD++ Y ++ + G + I AL+G SGSGKST + + R D
Sbjct: 21 LSTKDLHVYYG---KKEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIAR 77
Query: 442 --GEVLIDG--VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
G++L G +N KE + +R+ IG+V Q P + SI +NI + A ++ +
Sbjct: 78 VTGQILYRGIDINRKEINVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLD 137
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E S L + ++ + + LSGGQ+QR+ IARA+ P ILL+DE SALD
Sbjct: 138 EIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPI 197
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
S ++E + + N T +IV+H + R ++ A G ++E + NP
Sbjct: 198 STMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTNP 253
|
Length = 267 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-26
Identities = 68/228 (29%), Positives = 125/228 (54%), Gaps = 14/228 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +K+ FS+ ++ + L+ L +P G++ A+VG++G GK+++IS + P++
Sbjct: 615 ISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDAS 674
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
++ IR + V Q + ++++RDNI +G E + A + H
Sbjct: 675 VV------------IRGTVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQH 721
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV-Q 563
+ LP G T +GE G+ +SGGQKQRV++ARA+ + + + D+ SALD+ GR V
Sbjct: 722 DLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFD 781
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
+ + + +T V+V+++L + + I ++ +G I E+GT+ EL N
Sbjct: 782 KCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN 829
|
Length = 1622 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 70/226 (30%), Positives = 110/226 (48%), Gaps = 27/226 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
V F Y P LT+P G+ +A++G SG+GKST+++L+ F P+SG I ++GV
Sbjct: 7 VRFSYGHLPM-----RFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGV 61
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQ------------- 1121
+ + + ++ QE LF+ T+ NI + ++ Q
Sbjct: 62 DHTASPPA--ERPVSMLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGL 119
Query: 1122 EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
G+ + +LSGGQ+QRVA+AR +V+E ILLLDE SALD + + Q+
Sbjct: 120 AGFLKRLPG---ELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLALVSQLC 176
Query: 1182 VDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224
+R T L+V H A + + G I +GS + L+S K
Sbjct: 177 DERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGKA 222
|
Length = 231 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (278), Expect = 1e-26
Identities = 67/249 (26%), Positives = 110/249 (44%), Gaps = 59/249 (23%)
Query: 385 IELKDVNFSYPARPDEQ------ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438
+E+K++ +P ++G I G LVG SG GKST+ LI +
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEE 64
Query: 439 PQAGEVLIDGVNL----KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ 494
P +GE+L +G ++ KE + + + E + V + + Y H
Sbjct: 65 PTSGEILFEGKDITKLSKEERRERVLELLEKVG---------LPEEFLYRYPH------- 108
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+LSGGQ+QR+ IARA+ +P++++ DE SAL
Sbjct: 109 ----------------------------ELSGGQRQRIGIARALALNPKLIVADEPVSAL 140
Query: 555 D-SESGRMVQ--EALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
D S +++ + L + T + +SH LS++R ++ IAV+ GKIVE G E+
Sbjct: 141 DVSVQAQILNLLKDLQEEL-GLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGPTEEVFS 199
Query: 611 NPYGAYNRL 619
NP Y +
Sbjct: 200 NPLHPYTKA 208
|
Length = 268 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 1e-26
Identities = 68/230 (29%), Positives = 116/230 (50%), Gaps = 13/230 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+ D+ SY Q + G I L+G +G+GK+T++ +I P +G+V
Sbjct: 2 LEVTDLTKSYG--SKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKV 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQE-PVLLSSSIRDNIAY-GKTHATKEEIQAAAEAANA 502
IDGV+ +R KIG++ E + + R+N+ Y + + + + A A
Sbjct: 60 TIDGVDTVRDPSF-VRRKIGVLFGERGLYARLTARENLKYFARLNGLSRK-EIKARIAEL 117
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
S ++ L + LD VGE S G KQ+VAIARA++ DP IL+LDE TS LD + R
Sbjct: 118 SKRLQ-LLEYLDRRVGE----FSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRTRRKF 172
Query: 563 QEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
+ + ++ R + SH + + + + V+ +G++V +G+ L
Sbjct: 173 HDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDA 222
|
Length = 245 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (275), Expect = 1e-26
Identities = 80/240 (33%), Positives = 120/240 (50%), Gaps = 19/240 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
I KDV+ SY + + L+G L + AL+G SG GKST + + R D
Sbjct: 5 ISAKDVHLSYG---NYEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIK 61
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA---TKEEI- 493
GE+ +G N+ + L +R+++G+V Q+P S+ DN+AYG A KE I
Sbjct: 62 ITGEIKFEGQNIYGSKMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELID 121
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
Q E+ + K LD N SGGQ+QR+ IARA+ P+++LLDE TSA
Sbjct: 122 QRVEESLKQAAIWKETKDNLDRNAQ----AFSGGQQQRICIARALAVRPKVVLLDEPTSA 177
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
LD S ++E L + T ++V+H L R ++ A + G ++E G E+ P
Sbjct: 178 LDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAP 237
|
Length = 251 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 1e-26
Identities = 73/229 (31%), Positives = 111/229 (48%), Gaps = 27/229 (11%)
Query: 400 EQILNGFCL----LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL---- 451
+ L F L +P + A+ G SGSGK+T+I LI P GE++++G L
Sbjct: 6 SKRLGDFSLDADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSR 65
Query: 452 KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAA----NASHFI 506
K L + +IG V QE L S+R N+ YG A E + + E H +
Sbjct: 66 KGIFLPPEKRRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLL 125
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
LP +LSGG+KQRVAI RA++ PR+LL+DE +ALD + L
Sbjct: 126 GRLPG-----------RLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYL 174
Query: 567 DRVM--INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
+R+ + VSH L + R A+ + V++ G++ G +E+ +P
Sbjct: 175 ERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASP 223
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-26
Identities = 65/201 (32%), Positives = 104/201 (51%), Gaps = 17/201 (8%)
Query: 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI----REKIGLVS 467
N + + G SG+GKST++ I P G ++++G L + + K + KIGLV
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 468 QEPVLLSS-SIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525
Q+ L ++R+N+A+G K +E+ + E + GLD + + QLS
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRISVDELLDL--------LGLDHLLNRYPAQLS 133
Query: 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLS 583
GG+KQRVA+ARA+ P +LLLDE SALD + L ++ +N + V+H LS
Sbjct: 134 GGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLS 193
Query: 584 -LIRNANIIAVIQQGKIVEKG 603
A+ I V++ G++ G
Sbjct: 194 EAEYLADRIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-26
Identities = 70/241 (29%), Positives = 119/241 (49%), Gaps = 25/241 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE- 443
+E K V+F+YP + LN IP G+ AL+G +GSGKST+ LI P
Sbjct: 6 VEFKHVSFTYPDSK-KPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 444 --VLIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG--KTHATKEE----I 493
+ +DG+ L + IREK+G+V Q P + +++ D++A+G + E +
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+ +I + P LSGGQKQRVAIA + +P+I++LDE+TS
Sbjct: 125 RDVLADVGMLDYIDSEPA-----------NLSGGQKQRVAIAGILAVEPKIIILDESTSM 173
Query: 554 LDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
LD + + + ++ N T + ++H + A+ + V+ GK++ +G+ E+
Sbjct: 174 LDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233
Query: 612 P 612
Sbjct: 234 V 234
|
Length = 282 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 68/222 (30%), Positives = 106/222 (47%), Gaps = 23/222 (10%)
Query: 403 LNGFCLLI----PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL----KEF 454
L F L P I AL G SGSGK+++I++I P G + ++G L K
Sbjct: 10 LGNFALDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGI 69
Query: 455 QLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL 513
L + +IG V Q+ L ++R N+ YG + + + H + P
Sbjct: 70 FLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALLGIEHLLDRYP--- 126
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--I 571
LSGG+KQRVAI RA++ P +LL+DE ++LD R + L+R+ I
Sbjct: 127 --------GTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRDEI 178
Query: 572 NRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
N + VSH L ++R A+ + V++ GK+ G E+ +P
Sbjct: 179 NIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWGSP 220
|
Length = 352 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (270), Expect = 2e-26
Identities = 76/228 (33%), Positives = 120/228 (52%), Gaps = 34/228 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ L V + Y P E F L + +G I A++G SG+GKST+++LI F +P +G +
Sbjct: 1 LALDKVRYEYEHLPME-----FDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSI 55
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG-----KTHAT-KEEIQAAA 497
++ + L + + ++ QE L + ++R NI G K +A +E++ AA
Sbjct: 56 KVNDQS--HTGLAPYQRPVSMLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAA 113
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ + ++ LP+ QLSGGQ+QRVA+AR +++ ILLLDE SALD
Sbjct: 114 QQVGIADYLDRLPE-----------QLSGGQRQRVALARCLVRPNPILLLDEPFSALDP- 161
Query: 558 SGRMVQEALDRVMI-----NRTTVIVSHRLS-LIRNANIIAVIQQGKI 599
+ +E L V RT ++V+H LS A+ IAV+ QGKI
Sbjct: 162 --LLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 2e-26
Identities = 74/238 (31%), Positives = 125/238 (52%), Gaps = 16/238 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
I+++++N Y ++Q L + IP ++ AL+G SG GKST I + R D
Sbjct: 13 IKVENLNLWYG---EKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCR 69
Query: 440 QAGEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYG-KTH-ATKEEIQA 495
G+V I+G ++ E + + R+ +G+V Q+P SI DN+AYG + H A K+++
Sbjct: 70 IEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDG 129
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
E A S + + + + LSGGQ+QR+ IAR + P+I+L DE TSALD
Sbjct: 130 VVENALRSAALWD---ETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALD 186
Query: 556 SESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
S +++ + + + T VIV+H + R ++ G+++E G ++ NP
Sbjct: 187 PISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNP 244
|
Length = 258 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 2e-26
Identities = 71/240 (29%), Positives = 120/240 (50%), Gaps = 31/240 (12%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG------------EVLI 446
D+ L G + IP ++ AL+G SG GKST + + R D ++
Sbjct: 57 DDHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQ 116
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHAT-----------KEEIQ 494
DGVNL E +R+++G+V Q P SIR+NI+YG + H +++
Sbjct: 117 DGVNLVE-----LRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKD 171
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A E S L ++ + ++ + LSGGQ+QR+ IAR + DP ++L+DE SAL
Sbjct: 172 AEDELVERSLRQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASAL 231
Query: 555 DSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAV-IQQGKIVEKGTHSELLENP 612
D + +++ ++ + T V+V+H + R ++ AV + G++VE ++ ENP
Sbjct: 232 DPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEYDDTDKIFENP 291
|
Length = 305 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 3e-26
Identities = 71/214 (33%), Positives = 110/214 (51%), Gaps = 30/214 (14%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
+ D+ L +P G +AL+G SGSGKST++ ++ P SG I L+G + ++ +
Sbjct: 14 QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHAR--D 71
Query: 1087 QQMGVVSQEPVLFSD-TIRANIA---EMANANGF--------------ISGLQEGYDTLV 1128
+++G V Q LF T+R NIA E+ + GL + Y
Sbjct: 72 RKIGFVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEGLGDRYPN-- 129
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTT 1186
QLSGGQ+QRVA+ARA+ EP++LLLDE ALD + + ++ L ++ V TT
Sbjct: 130 -----QLSGGQRQRVALARALAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTT 184
Query: 1187 LVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESL 1219
+ V H ++ A I V+S G I + GS + +
Sbjct: 185 VFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEV 218
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (275), Expect = 3e-26
Identities = 82/244 (33%), Positives = 135/244 (55%), Gaps = 28/244 (11%)
Query: 385 IELKDVNFSY-PARPDEQI-LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I+++++ Y P E+ L+ + I +G L+G +GSGKST+I + P +G
Sbjct: 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSG 62
Query: 443 EVLIDGVNL--KEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEEIQA- 495
+++IDGV++ K+ +L IR+K+GLV Q P L +I +IA+G + ++EEI+
Sbjct: 63 KIIIDGVDITDKKVKLSDIRKKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENR 122
Query: 496 AAEAANASHFIKNLPQGLDTNV--GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A N GLD + +LSGGQK+RVAIA + +P+IL+LDE T+
Sbjct: 123 VKRAMNIV--------GLDYEDYKDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAG 174
Query: 554 LDSESGRMVQEALDRVM-----INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSE 607
LD + GR E L+++ N T ++VSH + + + A+ I V+ +GK +GT E
Sbjct: 175 LDPK-GR--DEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPRE 231
Query: 608 LLEN 611
+ +
Sbjct: 232 VFKE 235
|
Length = 287 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-26
Identities = 77/226 (34%), Positives = 126/226 (55%), Gaps = 16/226 (7%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF---YDPQA---GEVLIDGVNLK 452
D+ IL + IPN +I ++G SGSGKST++ ++ R YD + G+VL G ++
Sbjct: 22 DKAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIF 81
Query: 453 EFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG-KTHATKE--EIQAAAEAA-NASHFIK 507
+ +R+++G+V Q+P SI DNIAY K+H KE EI+ E K
Sbjct: 82 QIDAIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWK 141
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
+ L++ QLSGGQ+QR+ IARA+ P++LL+DE TS +D + + +++ +
Sbjct: 142 EVYDRLNSPAS----QLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 568 RVMINRTTVIVSHR-LSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ VIVSH + R A+ +A + G++VE G+ +E+ +P
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSP 243
|
Length = 257 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 108 bits (273), Expect = 4e-26
Identities = 68/214 (31%), Positives = 109/214 (50%), Gaps = 28/214 (13%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-- 1087
D+ L + G+ ++G SGSGKST++ + R +P+SG + +DG +I + K LR+
Sbjct: 41 NDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELR 100
Query: 1088 --QMGVVSQEPVLFSD-TIRANIA---EMANANGFIS-----------GLQEGY-DTLVG 1129
++ +V Q L T+ N+A E+ GL EG+
Sbjct: 101 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGL-EGWEHKYPD 159
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTL 1187
E LSGG +QRV +ARA+ +P ILL+DEA SALD R +QD L Q + +T +
Sbjct: 160 E----LSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIV 215
Query: 1188 VVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLI 1220
+ H L ++ IA++ G +V+ G+ E ++
Sbjct: 216 FITHDLDEALRLGDRIAIMKDGRLVQVGTPEEIL 249
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-26
Identities = 74/233 (31%), Positives = 113/233 (48%), Gaps = 31/233 (13%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL---------- 451
+L+G + G AL+G SGSGKST++ ++ G++ ++G L
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 452 ---KEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIK 507
E L+ +R KIG+V Q L ++ DN+ +A AE A +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVL-VLGMARAEAEK-RAMELLD 132
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
+ GL QLSGGQ+QRVAIARA+ P+++L DE TSALD E +V E L+
Sbjct: 133 MV--GLADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGEVLN 187
Query: 568 RVMINR-------TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+I R T ++V+H + R A+ + +G+IVE+G E+ P
Sbjct: 188 --VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQP 238
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 6e-26
Identities = 75/237 (31%), Positives = 125/237 (52%), Gaps = 13/237 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
+E + ++F Y D Q L+ L + AL+G SG GKST + + R D P A
Sbjct: 7 MEARGLSFFYG---DFQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGAR 63
Query: 442 --GEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAA 496
GE+L+DG N+ + + + R ++G+V Q+P SI +N+AYG + + K++
Sbjct: 64 VEGEILLDGENIYDPHVDVVELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDK-AYL 122
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
AE S L + + E + LSGGQ+QR+ IARA+ +P +LL+DE SALD
Sbjct: 123 AERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDP 182
Query: 557 ESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ + ++E + + T +IV+H + R +++ A GK++E G ++ P
Sbjct: 183 IATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTRP 239
|
Length = 253 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 7e-26
Identities = 80/237 (33%), Positives = 122/237 (51%), Gaps = 13/237 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
IE +++N Y D + LN + I +I AL+G SG GKST + + R D
Sbjct: 8 IETENLNLFYT---DFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIK 64
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAA 496
G V+ +G N+ F + +R KIG+V Q P SI DNI+YG K H TK++ +
Sbjct: 65 IEGNVIYEGKNIYSNNFDILELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDK-KKL 123
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
E S L + + + + LSGGQ+QR+ IAR + +P ++L+DE TSALD
Sbjct: 124 DEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDP 183
Query: 557 ESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
S ++E + + + T +IV+H + R ++ A G I E+ + EL NP
Sbjct: 184 ISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNP 240
|
Length = 254 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 8e-26
Identities = 69/213 (32%), Positives = 106/213 (49%), Gaps = 33/213 (15%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
D+ L I G+ +AL+G SG+GKST++ ++ P +G I L+G + + +R
Sbjct: 17 ALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVRD 76
Query: 1088 -QMGVVSQEPVLFSD-TIRANIA-------EMANANGF------------ISGLQEGYDT 1126
++G V Q LF T+ NIA E + + GL + Y
Sbjct: 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYPA 136
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR-- 1184
QLSGGQ+QRVA+ARA+ EPK+LLLDE ALD + + ++ L ++ DR
Sbjct: 137 -------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKL-HDRLG 188
Query: 1185 -TTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGS 1215
TT+ V H ++ A + V++QG I + G
Sbjct: 189 VTTVFVTHDQEEALELADRVVVLNQGRIEQVGP 221
|
Length = 345 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (269), Expect = 9e-26
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 13/237 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
+ K++N Y ++ L + IP + AL+G SG GKST++ R D
Sbjct: 7 LSTKNLNLWYG---EKHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCR 63
Query: 440 QAGEVLIDGVNLKEFQLK--WIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAA 496
G++L +G N+ + +R KIG+V Q P SI +N+AYG + H K + +
Sbjct: 64 ITGDILYNGENIMDSGADVVALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNK-KTL 122
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
S L + + + + LSGGQ+QR+ IAR + +P ++L+DE SALD
Sbjct: 123 DTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDP 182
Query: 557 ESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ +++ ++ + T +IV+H + R ++ + GK++E +++ ENP
Sbjct: 183 IATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENP 239
|
Length = 253 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 9e-26
Identities = 78/265 (29%), Positives = 131/265 (49%), Gaps = 34/265 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E +D+ +SYP + L G G + AL+G +G+GKST+ P +GEV
Sbjct: 2 LETRDLKYSYP--DGTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 445 LIDGVNLK--EFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHA--TKEEIQA--- 495
LI G +K + L +R+ +G+V Q P L + ++ +++A+G + +KEE++
Sbjct: 60 LIKGEPIKYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVK 119
Query: 496 -AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A +A F P LSGGQK+RVAIA + P I++LDE TS L
Sbjct: 120 EALKAVGMEGFENKPPH-----------HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGL 168
Query: 555 D----SESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELL 609
D S+ +++ + + T +I +H + L+ A+ + V+ GKI+++GT E+
Sbjct: 169 DPMGASQIMKLLYDLNKEGI---TIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVF 225
Query: 610 ENP---YGAYNRLIRLQETCKESEK 631
+ A RL R+ + K
Sbjct: 226 SDIETIRKANLRLPRVAHLIEILNK 250
|
Length = 275 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 9e-26
Identities = 66/227 (29%), Positives = 110/227 (48%), Gaps = 25/227 (11%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN---LKEFQLKWI 459
L+ + G I L+G +G+GK+T+ +LI F P +G VL DG + L ++
Sbjct: 16 LDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEI--A 73
Query: 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTHAT----------KEEIQAAAEAANASHFIKN 508
R IG Q P L ++ +N+ T +EE +A A +
Sbjct: 74 RLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVG- 132
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSESGRMVQEALD 567
L D GE LS GQ++R+ IARA+ DP++LLLDE + L E+ + E +
Sbjct: 133 LADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPAAGLNPEETEELA-ELIR 187
Query: 568 RV-MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ T ++V H + ++ + A+ + V+ QG+++ +GT E+ NP
Sbjct: 188 ELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNNP 234
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-25
Identities = 53/233 (22%), Positives = 108/233 (46%), Gaps = 23/233 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++++++ +Y ++ L + G I L+G +G+GK+T + ++ P +G
Sbjct: 1 LQIRNLTKTYKKGTK-PAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAY-----GKTHATKEEIQAAAE 498
I+G +++ K R+ +G Q L ++R+++ + G + +E
Sbjct: 60 YINGYSIRT-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKE------ 112
Query: 499 AANASHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
++ L + LSGG K+++++A A+I P +LLLDE TS LD
Sbjct: 113 --EVELLLRVLGLTDKANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDP 166
Query: 557 ESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
S R + + + V R+ ++ +H + + IA++ GK+ G+ EL
Sbjct: 167 ASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 64/217 (29%), Positives = 110/217 (50%), Gaps = 26/217 (11%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF---- 454
D ++L G L I G I A+VG+SGSGKST++ L+ +P +GEVL +G +L +
Sbjct: 17 DTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNE 76
Query: 455 QLKWIREKIGLVSQ-EPVLLSSSIRDNIA-------YGKTHATKEEIQAAAEAANASHFI 506
+ K +K+G + Q +L + +N+A A KE E H I
Sbjct: 77 RAKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEA-KERAYEMLEKVGLEHRI 135
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
+ P +LSGG++QRVAIARA++ P ++L DE T LD+ + +++ + +
Sbjct: 136 NHRPS-----------ELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLM 184
Query: 567 DRVMINRTT--VIVSHRLSLIRNANIIAVIQQGKIVE 601
+ T ++V+H L L + + + ++ G++
Sbjct: 185 LELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 74/243 (30%), Positives = 120/243 (49%), Gaps = 23/243 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
IE ++ Y ++ G L IP + AL+G SG GKST++ R + +A
Sbjct: 5 IETVNLRVYYG---SNHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEAR 61
Query: 442 --GEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSS-SIRDNIAYG----KTHATKEE 492
GEV + G N+ + I R ++G+V Q P +I DN+A G +K+E
Sbjct: 62 VEGEVRLFGRNIYSPDVDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE 121
Query: 493 IQAAAEAANASHFIKN--LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
+ E A +K L + + ++ LSGGQ+QR+ IARA+ P+ILL+DE
Sbjct: 122 LDERVEWA-----LKKAALWDEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEP 176
Query: 551 TSALDSESGRMVQEALDRVMINRTTVIVSHR-LSLIRNANIIAVIQQGKIVEKGTHSELL 609
T+ +D ++E L + T V+V+H R ++ +A + GK++E G ++
Sbjct: 177 TANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVF 236
Query: 610 ENP 612
ENP
Sbjct: 237 ENP 239
|
Length = 253 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 114 bits (288), Expect = 2e-25
Identities = 64/275 (23%), Positives = 126/275 (45%), Gaps = 24/275 (8%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467
+ +P G + ++G +GSGKST++ + ++ G V W I V
Sbjct: 681 VSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRV-------------WAERSIAYVP 727
Query: 468 QEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHF---IKNLPQGLDTNVGEHGIQL 524
Q+ ++++++R NI + +E+ A+A S + L GL+T +GE G+ L
Sbjct: 728 QQAWIMNATVRGNILF----FDEEDAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNL 783
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESG-RMVQEALDRVMINRTTVIVSHRLS 583
SGGQK RV++ARA+ + + LLD+ SALD+ G R+V+E + +T V+ +H++
Sbjct: 784 SGGQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVH 843
Query: 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQP 643
++ A+ + + G++ G+ ++ + A + + + K +++
Sbjct: 844 VVPRADYVVALGDGRVEFSGSSADFMRTSLYAT---LAAELKENKDSKEGDADAEVAEVD 900
Query: 644 FASPKITTPKQSETESDFPASEKAKMPPDVSLSRL 678
A + + + A D + RL
Sbjct: 901 AAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRL 935
|
Length = 1560 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (263), Expect = 2e-25
Identities = 51/153 (33%), Positives = 87/153 (56%), Gaps = 9/153 (5%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L++ G+ IA+ G SG GKST++ ++ P+SG + +G ++ L+ + RQQ+ +
Sbjct: 24 LSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKPEAYRQQVSYCA 83
Query: 1094 QEPVLFSDTIRANI-------AEMANANGFISGLQ--EGYDTLVGERGVQLSGGQKQRVA 1144
Q P LF DT+ N+ + + L D+++ + +LSGG+KQR+A
Sbjct: 84 QTPALFGDTVEDNLIFPWQIRNRRPDRAAALDLLARFALPDSILTKNITELSGGEKQRIA 143
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
+ R + PKILLLDE TSALD ++R +++ +
Sbjct: 144 LIRNLQFMPKILLLDEITSALDESNKRNIEEMI 176
|
Length = 223 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 3e-25
Identities = 80/240 (33%), Positives = 120/240 (50%), Gaps = 35/240 (14%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
EV+ L F T V + L + PG+ +A++G SGSGK+T++ + P +
Sbjct: 3 AIEVKNLVKKFHGQT-----VLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEA 57
Query: 1068 GHITLDGVEI--------QKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAE--------- 1109
G I + + I QK ++ LRQ +G V Q LF T+ NI E
Sbjct: 58 GTIRVGDITIDTARSLSQQKGLIRQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEP 117
Query: 1110 ----MANANGFIS--GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163
A A ++ GL G +T R LSGGQ+QRVAIARA+ P+++L DE TS
Sbjct: 118 KEEATARARELLAKVGL-AGKETSYPRR---LSGGQQQRVAIARALAMRPEVILFDEPTS 173
Query: 1164 ALDIESERVVQDALDQVMVDRTTLV-VAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
ALD E V + + Q+ ++ T+V V H +S ++ A + QG IVE+G ++L +
Sbjct: 174 ALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233
|
Length = 250 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-25
Identities = 56/206 (27%), Positives = 94/206 (45%), Gaps = 22/206 (10%)
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078
Y V DL L + G+ L+G +G+GK+T + +L P+SG ++G I+
Sbjct: 9 TYKKGTKPAV-DDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIR 67
Query: 1079 KLQVKWLRQQMGVVSQEPVLFSD-TIRANI------------AEMANANGFIS--GLQEG 1123
K RQ +G Q LF + T+R ++ + GL +
Sbjct: 68 T-DRKAARQSLGYCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLTDK 126
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
+ LSGG K+++++A A++ P +LLLDE TS LD S R + D + +V
Sbjct: 127 ANKRAR----TLSGGMKRKLSLAIALIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKG 182
Query: 1184 RTTLVVAHRLSTIKN-AHLIAVVSQG 1208
R+ ++ H + + IA++S G
Sbjct: 183 RSIILTTHSMDEAEALCDRIAIMSDG 208
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 112 bits (282), Expect = 6e-25
Identities = 62/180 (34%), Positives = 98/180 (54%), Gaps = 49/180 (27%)
Query: 1101 DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
D+ ++++ + F+S L + Y+TLVG +LSGGQKQR++IARAI++ PKIL+LDE
Sbjct: 546 DSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDE 605
Query: 1161 ATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQ----------- 1207
ATS+LD +SE +VQ ++ + +R T+++AHRLSTI+ A+ I V+S
Sbjct: 606 ATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDI 665
Query: 1208 ------------------------------------GMIVEKGSHESLISTKNGIYTSLI 1231
I+E+G+H++L+ KNGIY ++I
Sbjct: 666 IGEDPTKDNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMI 725
|
Length = 1466 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 6e-25
Identities = 73/232 (31%), Positives = 114/232 (49%), Gaps = 34/232 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ L + FSY +P F L G I A+VG SGSGKST+++LI F PQ+G V
Sbjct: 1 VRLDKIRFSYGEQPMH-----FDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRV 55
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAA 500
LI+GV++ + ++ QE L + ++ N+ G + T E+ QA A
Sbjct: 56 LINGVDVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVAL 113
Query: 501 ---NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ K LP +LSGG++QRVA+AR +++D +LLLDE +ALD
Sbjct: 114 ARVGLAGLEKRLPG-----------ELSGGERQRVALARVLVRDKPVLLLDEPFAALDPA 162
Query: 558 SGRMVQEALDRVMINR-----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
+ E LD V+ T ++V+H+ + A + + G+I +G
Sbjct: 163 ---LRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 7e-25
Identities = 65/205 (31%), Positives = 102/205 (49%), Gaps = 23/205 (11%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-S 476
L+G SG GK+T++ L+ F P +G +++DG ++ I +V Q L +
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPPH--LRHINMVFQSYALFPHMT 58
Query: 477 IRDNIAYG----KTHAT--KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530
+ +N+A+G K K + A F P QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFADRKP-----------HQLSGGQQQ 107
Query: 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLS-LIRN 587
RVA+ARA++ P+ILLLDE SALD + +Q L + + T V V+H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 588 ANIIAVIQQGKIVEKGTHSELLENP 612
++ IA++++GKI + GT E+ E P
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEP 192
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 7e-25
Identities = 79/244 (32%), Positives = 122/244 (50%), Gaps = 20/244 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
I++KD+N Y + L I ++ A +G SG GKSTV+ + R ++ P A
Sbjct: 5 IDVKDLNIYYG---SFHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGAR 61
Query: 442 --GEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAA 496
GEVL+DG +L +R IG+V Q P + SIRDN+ G +
Sbjct: 62 VEGEVLLDGEDLYGPGVDPVAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDL 121
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
E S NL + + + G LSGGQ+QR+ IARA+ +P +LL+DE SALD
Sbjct: 122 DELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDP 181
Query: 557 ESGRMVQEALDRVMINRTTVIVSH------RLSLIRNA--NIIAVIQQGKIVEKGTHSEL 608
S +++ ++ + + T VIV+H R+S + A N+ A + G++VE ++
Sbjct: 182 ISTLAIEDLINELKQDYTIVIVTHNMQQAARVS-DQTAFFNLEATGKPGRLVEIDDTEKI 240
Query: 609 LENP 612
NP
Sbjct: 241 FSNP 244
|
Length = 258 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-25
Identities = 68/193 (35%), Positives = 102/193 (52%), Gaps = 20/193 (10%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L + G+ +A++G SG+GKST+++L+ F +P+SG I ++ L ++ + ++
Sbjct: 19 LNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLAPY--QRPVSMLF 76
Query: 1094 QEPVLFSD-TIRANIAEMANANGFISGLQE----------GYDTLVGERGVQLSGGQKQR 1142
QE LF+ T+R NI + ++ Q+ G + QLSGGQ+QR
Sbjct: 77 QENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLPEQLSGGQRQR 136
Query: 1143 VAIARAIVKEPKILLLDEATSALD----IESERVVQDALDQVMVDRTTLVVAHRLS-TIK 1197
VA+AR +V+ ILLLDE SALD E +V+ + RT L+V H LS
Sbjct: 137 VALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSE--RQRTLLMVTHHLSDARA 194
Query: 1198 NAHLIAVVSQGMI 1210
A IAVVSQG I
Sbjct: 195 IASQIAVVSQGKI 207
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 8e-25
Identities = 64/236 (27%), Positives = 116/236 (49%), Gaps = 23/236 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++++N Y QIL G L +P G I AL+G +G+GK+T++ I P++G +
Sbjct: 1 LEVENLNAGYG---KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSI 57
Query: 445 LIDGV---NLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAA 500
DG L + R IG V + + ++ +N+ G + + +A E
Sbjct: 58 RFDGRDITGLPPHER--ARAGIGYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERV 115
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
L + G LSGG++Q +AIARA++ P++LLLDE + L + +
Sbjct: 116 YE--LFPRLKERRKQLAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APK 166
Query: 561 MVQEALDRVM-INR---TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611
+V+E + + + T ++V A+ V+++G++V +GT +ELL +
Sbjct: 167 IVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLAD 222
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (262), Expect = 8e-25
Identities = 64/229 (27%), Positives = 106/229 (46%), Gaps = 26/229 (11%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN---LKEFQLKWI 459
+N L + G I L+G +G+GK+T+ +LI FY P +G V+ G + L ++
Sbjct: 20 VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRI--A 77
Query: 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTHAT------------KEEIQAAAEAANASHFI 506
R I Q L ++ +N+A G KEE +A A F+
Sbjct: 78 RLGIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFV 137
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSESGRMVQEA 565
GL LS GQ++R+ IARA+ P++LLLDE + L E+ + +
Sbjct: 138 -----GLGELADRPAGNLSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELI 192
Query: 566 LD-RVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ R T +++ H + L+ A+ I V+ G+++ +GT E+ NP
Sbjct: 193 RELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEVRNNP 241
|
Length = 250 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 9e-25
Identities = 55/204 (26%), Positives = 97/204 (47%), Gaps = 30/204 (14%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
++ Y P V D+ + PG+ +A+VG +G+GKST++ + P+SG I + G
Sbjct: 5 LTVSYGGHP---VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGK 61
Query: 1076 EIQKLQVKWLRQQMGVVSQE-------PVLFSDTIRANIAEMANANGFISGLQEGYD--- 1125
++K R+++G V Q P+ D + + +S +
Sbjct: 62 PLEKE-----RKRIGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLS--KADKAKVD 114
Query: 1126 ---TLVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
VG + +LSGGQ+QRV +ARA+V++P +LLLDE + +D +++ + +
Sbjct: 115 EALERVGLSELADRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPKTQEDIYEL 174
Query: 1177 LDQV-MVDRTTLVVAHRLSTIKNA 1199
L ++ T LVV H L +
Sbjct: 175 LRELRREGMTILVVTHDLGLVLEY 198
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 1e-24
Identities = 67/237 (28%), Positives = 118/237 (49%), Gaps = 24/237 (10%)
Query: 385 IELKDVNFSYPARPDEQI-LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I K+V+F Y + D L IP G ++VG +GSGKST+ L+ ++GE
Sbjct: 8 IVFKNVSFQY--QSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGE 65
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYG-KTHAT-----KEEIQA 495
+ + + + + +R+ IG+V Q P + S ++ ++A+G + HA +
Sbjct: 66 IFYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSE 125
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A + + P L SGGQKQRVAIA + +P +++LDEATS LD
Sbjct: 126 ALKQVDMLERADYEPNAL-----------SGGQKQRVAIAGVLALNPSVIILDEATSMLD 174
Query: 556 SESGRMVQEALDRVMINRTTVIVS--HRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
++ + + + + +V I+S H LS A+ + V+ +G + ++GT +E+ +
Sbjct: 175 PDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFD 231
|
Length = 269 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 2e-24
Identities = 72/215 (33%), Positives = 110/215 (51%), Gaps = 30/215 (13%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-- 1087
D L + G+ ++G SGSGKST++ LL R +P+ G I +DG +I KL LR+
Sbjct: 45 NDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELRELR 104
Query: 1088 --QMGVVSQEPVLFSD-TIRANIA--------------EMANANGFISGLQEGYDTLVGE 1130
++ +V Q L T+ N+A E A + GL+ D
Sbjct: 105 RKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN- 163
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD--IESERVVQDALD--QVMVDRTT 1186
+LSGG +QRV +ARA+ +P ILL+DEA SALD I +E +QD L Q + +T
Sbjct: 164 ---ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTE--MQDELLELQAKLKKTI 218
Query: 1187 LVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLI 1220
+ + H L ++ IA++ G IV+ G+ E ++
Sbjct: 219 VFITHDLDEALRIGDRIAIMKDGEIVQVGTPEEIL 253
|
Length = 386 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 2e-24
Identities = 70/209 (33%), Positives = 116/209 (55%), Gaps = 29/209 (13%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI--QKLQVKWLRQQ 1088
++ + I G+ + L+G +GSGKST+I L P+SG I +DGV+I +K+++ +R++
Sbjct: 25 NVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIRKK 84
Query: 1089 MGVVSQEP--VLFSDTIRANIA-----------EMAN---ANGFISGLQEGYDTLVGERG 1132
+G+V Q P LF +TI +IA E+ N I GL Y+ +
Sbjct: 85 VGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD--YEDYKDKSP 142
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-----VDRTTL 1187
+LSGGQK+RVAIA + EPKIL+LDE T+ LD + + L+++ + T +
Sbjct: 143 FELSGGQKRRVAIAGVVAMEPKILILDEPTAGLD---PKGRDEILNKIKELHKEYNMTII 199
Query: 1188 VVAHRLSTI-KNAHLIAVVSQGMIVEKGS 1215
+V+H + + K A I V+++G +G+
Sbjct: 200 LVSHSMEDVAKLADRIIVMNKGKCELQGT 228
|
Length = 287 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 104 bits (260), Expect = 2e-24
Identities = 74/210 (35%), Positives = 106/210 (50%), Gaps = 22/210 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----P 439
I L++V SY E + N FC IP G + AL+G SG GKSTV+ + R D
Sbjct: 14 ISLQNVTISYGTF--EAVKNVFCD-IPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCS 70
Query: 440 QAGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-----THATKEE 492
G VL DG +L +R +IG+V Q+P SI +NIA+G T E
Sbjct: 71 LKGRVLFDGTDLYDPRVDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDEL 130
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
++ + A K+ + E G LSGGQ+QR+ IAR + +P ++L+DE S
Sbjct: 131 VERSLRKAAVWDECKD-------KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCS 183
Query: 553 ALDSESGRMVQEALDRVMINRTTVIVSHRL 582
ALD S ++E + + N T VIV+H +
Sbjct: 184 ALDPISTLKIEETMHELKKNFTIVIVTHNM 213
|
Length = 269 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-24
Identities = 77/226 (34%), Positives = 105/226 (46%), Gaps = 41/226 (18%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
L V+ Y R +LN L IP G A+VG SG GKST++ L+ P AGE+L
Sbjct: 15 LNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLA 71
Query: 447 DGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHF 505
L E RE L+ Q+ LL + DN+ G ++ A A
Sbjct: 72 GTAPLAE-----AREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV----- 121
Query: 506 IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
GL E LSGGQKQRVA+ARA+I P +LLLDE ALD A
Sbjct: 122 ------GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPLGALD---------A 166
Query: 566 LDRV----MINR-------TTVIVSHRLS-LIRNANIIAVIQQGKI 599
L R+ +I T ++V+H +S + A+ + +I++GKI
Sbjct: 167 LTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKI 212
|
Length = 257 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 3e-24
Identities = 64/187 (34%), Positives = 100/187 (53%), Gaps = 28/187 (14%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEIQK--LQV 1082
+ + L I + AL+G SG GKST + L R D PS G + LDG +I K + V
Sbjct: 20 KKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDIDV 79
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQ-------- 1134
LR+++G+V Q+P F +I N+A +G ++ D +V E+ ++
Sbjct: 80 NQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKD--KKKLDEIV-EKSLKGAALWDEV 136
Query: 1135 ----------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
LSGGQ+QR+ IARA+ EP++LL+DE TSALD S +++ + ++ D
Sbjct: 137 KDRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDY 196
Query: 1185 TTLVVAH 1191
T ++V H
Sbjct: 197 TIVIVTH 203
|
Length = 250 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (260), Expect = 3e-24
Identities = 71/220 (32%), Positives = 116/220 (52%), Gaps = 23/220 (10%)
Query: 1016 VSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073
+SF+YP ++ D+ ++ G+ +A+VG +GSGKST+ LL P +G IT+
Sbjct: 11 ISFRYPDAATYALK---DVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVG 67
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANGFI-SGLQEGYDTLVGE 1130
G+ + + V +R+Q+G+V Q P T++ ++A G + E D + +
Sbjct: 68 GMVLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQ 127
Query: 1131 RGVQ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALD----IESERVVQDAL 1177
G++ LSGGQKQRVAIA + +P I++LDEATS LD E V+
Sbjct: 128 VGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSMLDPRGRREVLETVRQLK 187
Query: 1178 DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217
+Q + T L + H L A + V+++G I+E+G+ E
Sbjct: 188 EQKGI--TVLSITHDLDEAAQADRVIVMNKGEILEEGTPE 225
|
Length = 279 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 78/217 (35%), Positives = 116/217 (53%), Gaps = 27/217 (12%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467
L I G I AL+G SG GKST++ ++ F P AG++++DGV+L + + I ++
Sbjct: 40 LTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPINMMF 97
Query: 468 QEPVLLSS-SIRDNIAYG--KTHATKEEIQA-AAEAANASH---FIKNLPQGLDTNVGEH 520
Q L ++ NIA+G + K EI + E H F K P
Sbjct: 98 QSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPH--------- 148
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE-SGRMVQEALD---RVMINRTTV 576
QLSGGQ+QRVA+AR++ K P++LLLDE ALD + RM E +D RV + T V
Sbjct: 149 --QLSGGQRQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCV 204
Query: 577 IVSH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+V+H + + A IA++ +GK V+ G E+ E+P
Sbjct: 205 MVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241
|
Length = 377 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 4e-24
Identities = 71/233 (30%), Positives = 124/233 (53%), Gaps = 12/233 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE +D+ +SY ++ LN + P + A++G +G+GKST+ P +G V
Sbjct: 4 IETRDLCYSY--SGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSV 61
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
LI G + + ++ +R+ +GLV Q P + S ++ +IA+G + +E A ++A
Sbjct: 62 LIRGEPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSA 121
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
H + + L V H LSGG+K+RVAIA + +P++L+LDE T+ LD + + +
Sbjct: 122 LHMLG--LEELRDRVPHH---LSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKEL 176
Query: 563 QEALDR--VMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ L+ T + +H+L L+ A+ I V+ +G+IV GT E+ P
Sbjct: 177 IDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQP 229
|
Length = 277 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 103 bits (257), Expect = 4e-24
Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 19/234 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++++ F Y D LNG I G +++G +GSGKST LI ++ G+V
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHA---TKEEIQAAAEA 499
IDG L + +R KIG+V Q P + +++ D++A+G + +E I+ EA
Sbjct: 65 KIDGELLTAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEA 124
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD---- 555
A + LD E +LSGGQKQRVA+A + P I++LDE+TS LD
Sbjct: 125 LLAVNM-------LDFKTREPA-RLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGR 176
Query: 556 SESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609
E R++ E ++ + T + ++H L +++ I V++ G+I+++ SEL
Sbjct: 177 QEIMRVIHEIKEKYQL--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELF 228
|
Length = 277 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 5e-24
Identities = 61/213 (28%), Positives = 101/213 (47%), Gaps = 21/213 (9%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+ F Y +P LT G+ A+VG SGSGKST+++L+ F P SG + ++GV
Sbjct: 6 IRFSYGEQPM-----HFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGV 60
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANAN--------GFISGL--QEGY 1124
++ + + ++ QE LF+ T+ N+ + I + G
Sbjct: 61 DVTAAPPA--DRPVSMLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGL 118
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
L +LSGG++QRVA+AR +V++ +LLLDE +ALD + D + + +
Sbjct: 119 AGLEKRLPGELSGGERQRVALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAET 178
Query: 1185 --TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
T L+V H+ K A + + G I +G
Sbjct: 179 KMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 5e-24
Identities = 61/201 (30%), Positives = 95/201 (47%), Gaps = 27/201 (13%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + +S Y +P D+ LTI G+ + ++G SG GK+T+++L+ F PS
Sbjct: 1 MCMLNVSHLSLSYEGKPRS-ALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSR 59
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIA--------------EMAN 1112
G I L+G I+ + GVV Q L + N+A E+A+
Sbjct: 60 GSIQLNGRRIEGPG-----AERGVVFQNEALLPWLNVIDNVAFGLQLRGIEKAQRREIAH 114
Query: 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
+ GL+ + QLSGG +QRV IARA+ EP++LLLDE ALD +
Sbjct: 115 QMLALVGLEGAEHKYI----WQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQ 170
Query: 1173 VQDALDQVMVDR--TTLVVAH 1191
+Q+ L + + L++ H
Sbjct: 171 MQELLLDLWQETGKQVLLITH 191
|
Length = 259 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 57/222 (25%), Positives = 110/222 (49%), Gaps = 19/222 (8%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M L F+ + ++ + T+ PG+ L+G +G+GK+T + +L +P +
Sbjct: 1 MITADALTKRFR-DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDA 59
Query: 1068 GHITLDGVEI--QKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA--------NANGF 1116
G T+DG ++ + + R+++G VS L+ T R N+ A
Sbjct: 60 GFATVDGFDVVKEPAEA---RRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTAR 116
Query: 1117 ISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
+ L + G + L+ R S G +Q+VAIARA+V +P +LLLDE T+ LD+ + R ++
Sbjct: 117 LEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALR 176
Query: 1175 DALDQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQGMIVEKG 1214
+ + Q+ ++ + H + ++ + V+ +G +V +G
Sbjct: 177 EFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 5e-24
Identities = 50/186 (26%), Positives = 93/186 (50%), Gaps = 13/186 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L++V + ILN + G + G SG GKST++ ++ P +G +
Sbjct: 8 LQLQNVGYLAGDAK---ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTL 64
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
L +G ++ + + R+++ +Q P L ++ DN+ + Q + + +
Sbjct: 65 LFEGEDISTLKPEIYRQQVSYCAQTPTLFGDTVYDNLIF--------PWQIRNQQPDPAI 116
Query: 505 FIKNLPQ-GLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
F+ +L + L + I +LSGG+KQR+++ R + P++LLLDE TSALD + V
Sbjct: 117 FLDDLERFALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDESNKHNV 176
Query: 563 QEALDR 568
E + R
Sbjct: 177 NEIIHR 182
|
Length = 225 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 6e-24
Identities = 72/237 (30%), Positives = 121/237 (51%), Gaps = 13/237 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQ- 440
+++ D++ Y ++ LN L PN I AL+G SGSGKST++ I R D P+
Sbjct: 6 LQVSDLSVYYN---KKKALNSVSLDFYPNE-ITALIGPSGSGKSTLLRSINRMNDLNPEV 61
Query: 441 --AGEVLIDGVNLKEFQLKW--IREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAA 496
G ++ +G N+ + +R++IG+V Q+P SI +N+ YG ++ Q
Sbjct: 62 TITGSIVYNGHNIYSPRTDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVL 121
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
EA S ++ + + + + LSGGQ+QRV IAR + P+I+LLDE TSALD
Sbjct: 122 DEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDP 181
Query: 557 ESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
S ++E L + + T ++V+ + R ++ G ++E ++ NP
Sbjct: 182 ISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238
|
Length = 252 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 6e-24
Identities = 72/243 (29%), Positives = 121/243 (49%), Gaps = 29/243 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+L +N Y A Q L L P G L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 445 LIDGVNL------KEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYGKTHA---TKE 491
I G + + ++ +R +G+V Q+ P L +++ N+ +K+
Sbjct: 60 NIAGNHFDFSKTPSDKAIRELRRNVGMVFQQYNLWPHL---TVQQNLIEAPCRVLGLSKD 116
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
+ A AE ++ L L + LSGGQ+QRVAIARA++ +P++LL DE T
Sbjct: 117 QALARAEK-----LLERLR--LKPYADRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPT 169
Query: 552 SALDSE-SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609
+ALD E + ++V + T VIV+H + + R A+ + ++ G IVE+G S
Sbjct: 170 AALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-F 228
Query: 610 ENP 612
P
Sbjct: 229 TQP 231
|
Length = 242 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 7e-24
Identities = 66/226 (29%), Positives = 109/226 (48%), Gaps = 39/226 (17%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M ++ ++ Y RP V D+ L++ G+ AL+G +G+GKST++ + PSS
Sbjct: 2 MPMIEVENLTVSYGNRP---VLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSS 58
Query: 1068 GHITLDGVEIQKLQVKWLR-----QQMGVVSQEPV---------------LFSDTIRANI 1107
G I + G ++K + K LR Q+ V P+ F + +
Sbjct: 59 GEIKIFGKPVRKRR-KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDK 117
Query: 1108 AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
++ A + G+++ D +GE LSGGQKQRV +ARA+ + P +LLLDE + +D+
Sbjct: 118 EKVDEALERV-GMEDLRDRQIGE----LSGGQKQRVLLARALAQNPDLLLLDEPFTGVDV 172
Query: 1168 ESERVVQDALDQ-VMVDRTTLVVAHRLSTIK---------NAHLIA 1203
++ + D L + +T L+V H L + N HLIA
Sbjct: 173 AGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLNRHLIA 218
|
Length = 254 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 7e-24
Identities = 59/186 (31%), Positives = 97/186 (52%), Gaps = 14/186 (7%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
+SF Y + E+ DL L + G+ IAL G++G+GK+T+ +L SSG I L+G
Sbjct: 4 NISFSY--KKGTEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNG 61
Query: 1075 VEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA----EMANANGFISGLQEGYD--T 1126
I+ K R+ +G V Q+ LF+D++R + E+ N + + D
Sbjct: 62 KPIKA---KERRKSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYA 118
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRT 1185
L + LSGGQKQR+AIA A++ +L+ DE TS LD ++ V + + ++ +
Sbjct: 119 LKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMERVGELIRELAAQGKA 178
Query: 1186 TLVVAH 1191
+V+ H
Sbjct: 179 VIVITH 184
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 109 bits (273), Expect = 8e-24
Identities = 68/220 (30%), Positives = 113/220 (51%), Gaps = 15/220 (6%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V R + I P + + +VG +GSGKST++ R + G I ++G EI ++ LR+
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 1088 QMGVVSQEPVLFSDTIRANI--------------AEMANANGFISGLQEGYDTLVGERGV 1133
Q ++ Q+PVLF T+R N+ E+ ++ EG D+ V E G
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVDPFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGGS 1444
Query: 1134 QLSGGQKQRVAIARAIVKE-PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192
S GQ+Q + +ARA++K+ +L+DEAT+ +D +R +Q + T + +AHR
Sbjct: 1445 NYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHR 1504
Query: 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
L T+ I V+ G + E GS L+ + I+ S++E
Sbjct: 1505 LHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVE 1544
|
Length = 1560 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 8e-24
Identities = 69/218 (31%), Positives = 100/218 (45%), Gaps = 18/218 (8%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQA----GEVLIDGVNLKEFQLKWIREKIGLVSQ 468
G + ALVG SGSGKS I P GE+L+DG L L I + Q
Sbjct: 12 GEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLP--LSIRGRHIATIMQ 69
Query: 469 EPV-----LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523
P L + + ++ K QA A A + LP + + ++ Q
Sbjct: 70 NPRTAFNPLFT--MGNHAIETLRSLGKLSKQARALILEALEAV-GLPDP-EEVLKKYPFQ 125
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI--VSHR 581
LSGG QRV IA A++ +P L+ DE T+ LD + V + L + T I ++H
Sbjct: 126 LSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGILLITHD 185
Query: 582 LSLI-RNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
L ++ R A+ +AV+ G+IVE+GT E+ NP R
Sbjct: 186 LGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETTR 223
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 8e-24
Identities = 70/236 (29%), Positives = 117/236 (49%), Gaps = 11/236 (4%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
+E+KD++ Y +++ +N + I + AL+G SG GKST + I R D P A
Sbjct: 22 LEVKDLSIYYG---EKRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSAR 78
Query: 442 --GEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
GE+L +G+N+ + +R +IG+V Q+P SI +NI + +A +
Sbjct: 79 SEGEILYEGLNILDSNINVVNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLD 138
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E S L + + + LSGGQ+QR+ IAR + P +LLLDE SALD
Sbjct: 139 EIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPI 198
Query: 558 SGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
S ++E + + + +IV+H + +R ++ A G +VE ++ +P
Sbjct: 199 SNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTSP 254
|
Length = 268 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 1e-23
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 19/213 (8%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+++ L + G ++G +GSGKS ++ + F P SG I L+G +I L + ++ +
Sbjct: 16 KNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPPE--KRDI 73
Query: 1090 GVVSQEPVLFSD-TIRANIA-----------EMANANGFISGLQEGYDTLVGERGVQLSG 1137
V Q LF T+ NIA E+ I+ + G D L+ + LSG
Sbjct: 74 SYVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEML-GIDHLLNRKPETLSG 132
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLST 1195
G++QRVAIARA+V PKILLLDE SALD+ ++ +++ L ++ T L V H
Sbjct: 133 GEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEE 192
Query: 1196 IKN-AHLIAVVSQGMIVEKGSHESLIST-KNGI 1226
A +A++ G +++ G E + KN
Sbjct: 193 AWALADKVAIMLNGKLIQVGKPEEVFKKPKNEF 225
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 1e-23
Identities = 78/265 (29%), Positives = 125/265 (47%), Gaps = 39/265 (14%)
Query: 385 IELKDVNFSYPARP-------DE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
+E++D+ +P + D + ++G L + G LVG SGSGKST+ + R
Sbjct: 277 LEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRL 336
Query: 437 YDPQAGEVLIDGVNLKEF---QLKWIREKIGLVSQEPVLLSSSIRDNIA---------YG 484
Q GE+ DG ++ +++ +R ++ +V Q+P S S R + +
Sbjct: 337 IPSQ-GEIRFDGQDIDGLSRKEMRPLRRRMQVVFQDP-YGSLSPRMTVGQIIEEGLRVHE 394
Query: 485 KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGE---HGIQLSGGQKQRVAIARAMIKD 541
+ E Q EA GLD H + SGGQ+QR+AIARA+I
Sbjct: 395 PKLSAAERDQRVIEALEEV--------GLDPATRNRYPH--EFSGGQRQRIAIARALILK 444
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMINR--TTVIVSHRLSLIRN-ANIIAVIQQGK 598
P ++LLDE TSALD V + L + + + +SH L+++R + + V++ GK
Sbjct: 445 PELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGK 504
Query: 599 IVEKGTHSELLENPYGAYNR-LIRL 622
IVE+G + NP Y R L+
Sbjct: 505 IVEQGPTEAVFANPQHEYTRALLAA 529
|
Length = 534 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-23
Identities = 54/180 (30%), Positives = 97/180 (53%), Gaps = 11/180 (6%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
++ ++ G+ + G SG GKST++ ++ P+SG + +G +I L+ + RQQ+
Sbjct: 25 NISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQVS 84
Query: 1091 VVSQEPVLFSDTIRANIA-------EMANANGFISGLQ--EGYDTLVGERGVQLSGGQKQ 1141
+Q P LF DT+ N+ + + F+ L+ DT++ + +LSGG+KQ
Sbjct: 85 YCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERFALPDTILTKNIAELSGGEKQ 144
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV--VAHRLSTIKNA 1199
R+++ R + PK+LLLDE TSALD ++ V + + + + ++ V V H I +A
Sbjct: 145 RISLIRNLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHA 204
|
Length = 225 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 102 bits (255), Expect = 1e-23
Identities = 74/239 (30%), Positives = 131/239 (54%), Gaps = 20/239 (8%)
Query: 385 IELKDVNFSYPA-RPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I L++V+++Y A P E + L L I +G+ A +G +GSGKST++ L+ + P G
Sbjct: 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQG 62
Query: 443 EVLIDGVNL----KEFQLKWIREKIGLVSQ--EPVLLSSSIRDNIAYGKTH--ATKEEIQ 494
V +D + K +K IR+K+GLV Q E L ++ ++A+G + ++EE +
Sbjct: 63 SVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAE 122
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A A K G+ ++ E +LSGGQ +RVAIA + +P+IL+LDE T+
Sbjct: 123 ALARE-------KLALVGISESLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAG 175
Query: 554 LDSESGRMVQEALDRVMIN-RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
LD + + + ++ + T V+V+H + + N A+ + V+++GK+V G ++ +
Sbjct: 176 LDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQ 234
|
Length = 280 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-23
Identities = 78/229 (34%), Positives = 119/229 (51%), Gaps = 45/229 (19%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ-------- 1078
EV + + L G I+++G SGSGKST + + PS+G I ++G EI+
Sbjct: 20 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQ 79
Query: 1079 -----KLQVKWLRQQMGVVSQEPVLFSD-TIRANIAE-------------MANANGFIS- 1118
K Q++ LR ++G+V Q L+S T+ N+ E + A +++
Sbjct: 80 LKPADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERAEKYLAK 139
Query: 1119 -GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
G+ E D LSGGQ+QRVAIARA+ EP+++L DE TSALD E +V + L
Sbjct: 140 VGIAEKADAY----PAHLSGGQQQRVAIARALAMEPEVMLFDEPTSALDPE---LVGEVL 192
Query: 1178 DQVMVD-----RTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESL 1219
+VM D RT +VV H + ++ +H+I + QG I E+G E +
Sbjct: 193 -KVMQDLAEEGRTMVVVTHEMGFARDVSSHVI-FLHQGKIEEEGPPEQV 239
|
Length = 256 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 2e-23
Identities = 64/185 (34%), Positives = 93/185 (50%), Gaps = 24/185 (12%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--P---SSGHITLDGVEI--QKLQV 1082
+++ L I + A +G SG GKST++ R Y+ P + G I LDG I K +
Sbjct: 30 KNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQDI 89
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIA------------EMAN----ANGFISGLQEGYDT 1126
LR ++G+V Q+P F +I NIA EM A + E D
Sbjct: 90 ALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDK 149
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
L + G LSGGQ+QR+ IAR I P++LLLDE SALD S +++ + ++ D T
Sbjct: 150 L-HQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTV 208
Query: 1187 LVVAH 1191
++V H
Sbjct: 209 VIVTH 213
|
Length = 260 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 2e-23
Identities = 52/119 (43%), Positives = 70/119 (58%), Gaps = 8/119 (6%)
Query: 1053 STVISLLQRFYDPSSGHITLDGVEIQKL-QVKWLRQQMGVVSQEPVLFSD-TIRANIAEM 1110
ST++ L+ P+SG I LDG + L K LR+++GVV Q+P LF + T+R N+
Sbjct: 1 STLLKLITGLLQPTSGTILLDGEDGTGLSSRKLLRKRIGVVFQDPQLFPELTVRENLFFG 60
Query: 1111 AN---ANGFISGLQEGY---DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163
A+ E D L E LSGGQKQRVAIARA++K+PK+LLLDE T+
Sbjct: 61 LRDKEADARAEEALERVGLPDFLDREPVGTLSGGQKQRVAIARALLKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 2e-23
Identities = 81/257 (31%), Positives = 124/257 (48%), Gaps = 48/257 (18%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS-TVISLLQRFYDPS-- 1066
++ L V+F +E + + I G+T+ALVGESGSGKS T +S+L P+
Sbjct: 8 SIRNLSVAFHQEGGT-VEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAA 66
Query: 1067 --SGHITLDGVEIQKLQVKWLR----QQMGVVSQEPVLFSD---TIRANIAEM------- 1110
SG I DG ++ + LR ++G++ QEP+ + TI +AE+
Sbjct: 67 HPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGL 126
Query: 1111 --ANANGFISGLQEGYDTLVG----ERGV-----QLSGGQKQRVAIARAIVKEPKILLLD 1159
A A L E LVG E+ + +LSGGQ+QRV IA A+ EP +L+ D
Sbjct: 127 SRAAARARALELLE----LVGIPEPEKRLDAYPHELSGGQRQRVMIAMALANEPDLLIAD 182
Query: 1160 EATSALDIESE-------RVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIV 1211
E T+ALD+ + + +Q L + L + H L ++ A + V+ G IV
Sbjct: 183 EPTTALDVTVQAQILDLLKELQAELGMAI-----LFITHDLGIVRKFADRVYVMQHGEIV 237
Query: 1212 EKGSHESLISTKNGIYT 1228
E G+ E+L + YT
Sbjct: 238 ETGTTETLFAAPQHPYT 254
|
Length = 534 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 62/187 (33%), Positives = 98/187 (52%), Gaps = 20/187 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEIQKLQ 1081
E +++ IP GK AL+G SG GKSTV+ L R D G + DG ++ +
Sbjct: 27 EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPR 86
Query: 1082 VK--WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLV----------- 1128
V +R+++G+V Q+P F +I NIA A NG+ + E + +
Sbjct: 87 VDPVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKD 146
Query: 1129 --GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
E G LSGGQ+QR+ IAR I EP+++L+DE SALD S +++ + ++ + T
Sbjct: 147 KLNESGYSLSGGQQQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTI 206
Query: 1187 LVVAHRL 1193
++V H +
Sbjct: 207 VIVTHNM 213
|
Length = 269 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 82/273 (30%), Positives = 135/273 (49%), Gaps = 22/273 (8%)
Query: 385 IELKDVNFSYP-ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I L++V++SYP P + +N L+I G ++G +GSGKST+ + PQ G+
Sbjct: 2 IRLENVSYSYPDGTPALENIN---LVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGK 58
Query: 444 VLIDGVNLKEF-QLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHAT--KEEIQAAAE 498
VL+ G++ +F +L+ IR+ +G+V Q P + ++ +++A+G + EI+ +
Sbjct: 59 VLVSGIDTGDFSKLQGIRKLVGIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVD 118
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A A GL+ LSGGQ Q VA+A + +P L+ DE TS LD +S
Sbjct: 119 RALAE-------IGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDS 171
Query: 559 GRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY- 616
G V E + ++ +T V ++H L + +A+ I V+ +GKIV +G +L +
Sbjct: 172 GIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTL 231
Query: 617 ----NRLIRLQETCKESEKSAVNNSDSDNQPFA 645
LI L E K + S FA
Sbjct: 232 GLTPPSLIELAENLKMHGVVIPWENTSSPSSFA 264
|
Length = 274 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 2e-23
Identities = 64/207 (30%), Positives = 110/207 (53%), Gaps = 8/207 (3%)
Query: 398 PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457
L+ + IP G + +VG G GKS+++ I G+V N E +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 458 WIREK----IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL 513
R + + +Q+P LL++++ +NI +G K+ +A +A + I LP G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPF-NKQRYKAVTDACSLQPDIDLLPFGD 130
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE-SGRMVQEALDRVMIN 572
T +GE GI LSGGQ+QR+ +ARA+ ++ I+ LD+ SALD S ++QE + + + +
Sbjct: 131 QTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQD 190
Query: 573 --RTTVIVSHRLSLIRNANIIAVIQQG 597
RT V+V+H+L + +A+ I ++ G
Sbjct: 191 DKRTLVLVTHKLQYLPHADWIIAMKDG 217
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 2e-23
Identities = 68/236 (28%), Positives = 119/236 (50%), Gaps = 22/236 (9%)
Query: 1011 VQFLRVSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++F VS+ Y T + D+ GK A+VG++GSGKST+I + P++G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 1069 HITLDGVEI-QKLQVKWL---RQQMGVVSQ--EPVLFSDTIRANI----------AEMAN 1112
+T+D + I K + K++ R+++G+V Q E LF DT+ I +
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 1113 ANGFISGLQEGYDTLVGERG-VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
+ G+ V + Q+SGGQ +++AI + P I++LDE T+ LD +S+R
Sbjct: 123 NYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGLDPQSKR 182
Query: 1172 VVQDALDQVMVD--RTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
V L + D +T ++V+H ++ + + A + V+ +G IV + S + L K
Sbjct: 183 QVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKDKK 238
|
Length = 286 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (252), Expect = 2e-23
Identities = 65/226 (28%), Positives = 109/226 (48%), Gaps = 16/226 (7%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNL-- 451
++ L L I + A++G SG GKST I + R + G++L N+
Sbjct: 36 EDHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFD 95
Query: 452 KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEE---IQAAAEAANASHFIK 507
K + ++ +R +G+V Q+P SI DN+ YG K H K++ + ++ +
Sbjct: 96 KSYSVEELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWD 155
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
L L N LSGGQ+QR+ IAR + +P ++L+DE TSALD S V+E +
Sbjct: 156 ELKDRLHDN----AYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQ 211
Query: 568 RVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ + + +IV+H + R ++ A G + E ++ NP
Sbjct: 212 ELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257
|
Length = 271 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 2e-23
Identities = 83/255 (32%), Positives = 130/255 (50%), Gaps = 36/255 (14%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN-------- 450
+ ++L G L G + +++G+SGSGKST + I P G ++++G
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 451 --LKEF---QLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASH 504
LK QL+ +R ++ +V Q L S ++ +N+ Q A E A
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERA---- 132
Query: 505 FIKNLPQ-GLDTNV-GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
+K L + G+D G++ + LSGGQ+QRV+IARA+ +P +LL DE TSALD E +V
Sbjct: 133 -VKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPE---LV 188
Query: 563 QEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAY 616
E L R+M +T V+V+H + R+ ++ + + QGKI E+G +L NP
Sbjct: 189 GEVL-RIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQLFGNPQSP- 246
Query: 617 NRLIRLQETCKESEK 631
RLQ+ K S K
Sbjct: 247 ----RLQQFLKGSLK 257
|
Length = 257 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-23
Identities = 82/258 (31%), Positives = 126/258 (48%), Gaps = 51/258 (19%)
Query: 1010 EVQFLRVSFKYPTRP--------HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061
+V+ L+V+F P R H V +++ T+ PG+T+ LVGESGSGKST L R
Sbjct: 277 DVEQLQVAF--PIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLR 334
Query: 1062 FYDPSSGHITLDGVEIQKLQVKWL---RQQMGVVSQEPVLFSDTIRANIAEMANANGF-- 1116
S G I DG + L + L R ++ VV Q+P S R N+ ++ G
Sbjct: 335 LI-NSQGEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDPN-SSLNPRLNVLQII-EEGLRV 391
Query: 1117 --------------ISGLQE-GYDTLVGER-GVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
I+ ++E G D R + SGGQ+QR+AIARA++ +P +++LDE
Sbjct: 392 HQPTLSAAQREQQVIAVMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDE 451
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV----------SQGMI 1210
TS+LD + VQ Q++ +L H+L+ + +H + VV QG +
Sbjct: 452 PTSSLD----KTVQ---AQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEV 504
Query: 1211 VEKGSHESLISTKNGIYT 1228
VE+G E + + YT
Sbjct: 505 VEQGDCERVFAAPQQEYT 522
|
Length = 529 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-23
Identities = 70/267 (26%), Positives = 133/267 (49%), Gaps = 18/267 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +K+ FS+ ++ + L+ L IP G++ A+VG +G GK+++IS +
Sbjct: 615 ISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSS 674
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
++ IR + V Q + ++++R+NI +G + E A + H
Sbjct: 675 VV------------IRGSVAYVPQVSWIFNATVRENILFGSDFES-ERYWRAIDVTALQH 721
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV-Q 563
+ LP T +GE G+ +SGGQKQRV++ARA+ + I + D+ SALD+ V
Sbjct: 722 DLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFD 781
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ + +T V+V+++L + + I ++ +G I E+GT +EL ++ + +L
Sbjct: 782 SCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKSG----SLFKKLM 837
Query: 624 ETCKESEKSAVNNSDSDNQPFASPKIT 650
E + + + N++ +N P +T
Sbjct: 838 ENAGKMDATQEVNTNDENILKLGPTVT 864
|
Length = 1495 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 3e-23
Identities = 64/209 (30%), Positives = 95/209 (45%), Gaps = 38/209 (18%)
Query: 1044 LVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-T 1102
L+G SG GK+T++ LL F P SG I LDG ++ V + + +V Q LF T
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDV--TNVPPHLRHINMVFQSYALFPHMT 58
Query: 1103 IRANIA---------------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141
+ N+A + F + QLSGGQ+Q
Sbjct: 59 VEENVAFGLKMRKVPRAEIKPRVLEALRLVQLEEFAD-----------RKPHQLSGGQQQ 107
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLVVAHRLS-TIKN 1198
RVA+ARA+V +PKILLLDE SALD + +Q L Q + T + V H +
Sbjct: 108 RVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQEEAMTM 167
Query: 1199 AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
+ IA++ +G I + G+ E + ++
Sbjct: 168 SDRIAIMRKGKIAQIGTPEEIYEEPANLF 196
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 104 bits (263), Expect = 3e-23
Identities = 60/185 (32%), Positives = 92/185 (49%), Gaps = 32/185 (17%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
E++ + SF ++ + LT+ PG+ AL+GE+G+GKST++ +L Y P SG
Sbjct: 10 ELRGISKSF-----GGVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGE 64
Query: 1070 ITLDGVEIQKLQVKWLRQQMGV--VSQEPVLFSD-TIRANIA---EMANANGFIS----- 1118
I +DG + + G+ V QE L + ++ NI E G I
Sbjct: 65 ILIDGKPVAFSSPR-DALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMR 123
Query: 1119 ----------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI- 1167
GL DTLVG+ LS Q+Q V IARA+ + ++L+LDE T+AL +
Sbjct: 124 RRARELLARLGLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTAALTVK 179
Query: 1168 ESERV 1172
E+ER+
Sbjct: 180 ETERL 184
|
Length = 500 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 99.4 bits (248), Expect = 4e-23
Identities = 71/231 (30%), Positives = 117/231 (50%), Gaps = 25/231 (10%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++F VS + +V ++ L I G+ + ++G SGSGKST++ + + + +SG +
Sbjct: 2 IEFKNVSKHFG---PTQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDL 58
Query: 1071 TLDGVEIQ--KLQVKWLRQQMGVVSQEPVLFSDT----------IRANIAEMANANGFIS 1118
+DG+++ K+ + +RQ+ G+V Q+ LF +R A A
Sbjct: 59 IVDGLKVNDPKVDERLIRQEAGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQAR 118
Query: 1119 GL--QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----RV 1172
L + G +LSGGQ+QRVAIARA+ +PK++L DE TSALD E +V
Sbjct: 119 ELLAKVGLAERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSALDPELRHEVLKV 178
Query: 1173 VQDALDQVMVDRTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
+QD ++ M T ++V H + K A + + +G I E G + LI
Sbjct: 179 MQDLAEEGM---TMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226
|
Length = 240 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (248), Expect = 4e-23
Identities = 71/236 (30%), Positives = 111/236 (47%), Gaps = 11/236 (4%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA- 441
I DV+ Y + L G L I AL+G SG GKST + + R D P
Sbjct: 6 ITSSDVHLFYGKF---EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVT 62
Query: 442 --GEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
G V + G N+ + +R+++G+V Q+P SI +N+ YG A ++
Sbjct: 63 ITGNVSLRGQNIYAPNEDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLD 122
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
EA S + + ++ E + LSGGQ+QRV IAR + P ++LLDE TSALD
Sbjct: 123 EAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPI 182
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
S ++ L + T ++V+H + R ++ A G ++E ++ NP
Sbjct: 183 SSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNP 238
|
Length = 252 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 4e-23
Identities = 72/238 (30%), Positives = 117/238 (49%), Gaps = 19/238 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+L +N Y A Q L L P G L+G SG+GKS+++ ++ P++G +
Sbjct: 3 IQLNGINCFYGA---HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTL 59
Query: 445 LIDGVNLK------EFQLKWIREKIGLVSQEPVLLS--SSIRDNIAYGKTHATKEEIQAA 496
I G + + ++ +R +G+V Q+ L + + I + QA
Sbjct: 60 NIAGNHFDFSKTPSDKAIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQAL 119
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
A A +K L L + + LSGGQ+QRVAIARA++ +P++LL DE T+ALD
Sbjct: 120 ARAEK---LLKRLR--LKPYADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDP 174
Query: 557 E-SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
E + ++V + T VIV+H + + R A+ + ++ G IVE+G S P
Sbjct: 175 EITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASC-FTEP 231
|
Length = 242 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 5e-23
Identities = 75/234 (32%), Positives = 119/234 (50%), Gaps = 12/234 (5%)
Query: 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA---G 442
+DVN Y D+Q + L + GT+ AL+G SG GK+T + I R +D P A G
Sbjct: 8 QDVNIYYG---DKQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTG 64
Query: 443 EVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEA 499
+L+DG ++ ++ + R ++G+V Q+P + S+ DN+ G A + E
Sbjct: 65 RILLDGQDIYGPRVDPVAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEV 124
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
A S L + + LSGGQ+QR+ IARA+ +P ILL+DE TSALD S
Sbjct: 125 AERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPAST 184
Query: 560 RMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+++ + + T +IV+H + R ++ + G +VE G +L NP
Sbjct: 185 ARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNP 238
|
Length = 252 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 99.3 bits (247), Expect = 6e-23
Identities = 65/191 (34%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PSS---GHITLDGVEI--QK 1079
+ + + I +A +G SG GKST + L R D P++ G I +DG I +
Sbjct: 17 HALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKG 76
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANG-----FISGLQEGYDTLVG----- 1129
+QV LR+ +G+V Q P F +I N+A NG FI Q +TL G
Sbjct: 77 VQVDELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIR--QRVEETLKGAALWD 134
Query: 1130 -------ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
E LSGGQ+QR+ IARA+ P +LL+DE SALD S V++ + ++
Sbjct: 135 EVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKK 194
Query: 1183 DRTTLVVAHRL 1193
D T ++V H +
Sbjct: 195 DYTIVIVTHNM 205
|
Length = 250 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 6e-23
Identities = 68/210 (32%), Positives = 110/210 (52%), Gaps = 16/210 (7%)
Query: 415 IAALVGTSGSGKSTVISLIQRFYD--PQ---AGEVLIDGVNL-----KEFQLKWIREKIG 464
+ A++G SG GKST + I R D P G ++ DG ++ E L R+KIG
Sbjct: 67 VTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLL---RKKIG 123
Query: 465 LVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523
+V Q+P SI DNIAYG + H ++ + E S L + + ++ +
Sbjct: 124 MVFQKPNPFPKSIFDNIAYGPRLHGINDK-KQLEEIVEKSLRKAALWDEVSDRLDKNALG 182
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGGQ+QR+ +AR + +P ILLLDE TSALD ++ +++ + + + T +IV+H +
Sbjct: 183 LSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQ 242
Query: 584 LI-RNANIIAVIQQGKIVEKGTHSELLENP 612
R ++ +G +VE ++L NP
Sbjct: 243 QASRVSDYTMFFYEGVLVEHAPTAQLFTNP 272
|
Length = 286 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 98.3 bits (246), Expect = 7e-23
Identities = 64/235 (27%), Positives = 112/235 (47%), Gaps = 39/235 (16%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
EV+ L F + D+ ++ PG+ L+G +G+GK+T+ +L+ F P+SG
Sbjct: 2 EVRGLTKRFG-----GLVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGS 56
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVS--QEPVLFSD-TIRANI---AEMANANGFIS----- 1118
+ DG +I L ++G+ Q P LF + T+ N+ A+ +G +
Sbjct: 57 VLFDGEDITGLPPH-EIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARR 115
Query: 1119 ----------------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162
GL + D GE LS GQ++R+ IARA+ +PK+LLLDE
Sbjct: 116 EEREARERAEELLERVGLADLADRPAGE----LSYGQQRRLEIARALATDPKLLLLDEPA 171
Query: 1163 SALDI-ESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ L+ E+E + + + T L+V H + + + A + V+ QG ++ +G+
Sbjct: 172 AGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGT 226
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 7e-23
Identities = 97/372 (26%), Positives = 155/372 (41%), Gaps = 68/372 (18%)
Query: 385 IELKDVNFSYPARPD------------EQIL---------NGFCLLIPNGTIAALVGTSG 423
I K+V+ + +PD E+IL + L I G I L+G SG
Sbjct: 1 IRFKNVDIVFGDQPDEALALLDQGKTREEILDRTGLVLGVHNASLDIEEGEICVLMGLSG 60
Query: 424 SGKSTVISLIQRFYDPQAGEVLI-------DGVNLKEFQLKWIR-EKIGLVSQEPVLLS- 474
SGKST++ + G VL+ D N L+ +R ++ +V Q+ LL
Sbjct: 61 SGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLRTHRVSMVFQQFALLPW 120
Query: 475 SSIRDNIAYGKTHATKEEIQAAAEA-----ANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529
++ +N+A+G E+Q +A + + L Q D GE LSGG +
Sbjct: 121 RTVEENVAFGL------EMQGMPKAERRKRVDEQLELVGLAQWADRKPGE----LSGGMQ 170
Query: 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRL-SLIR 586
QRV +ARA + ILL+DE SALD +Q+ L + + +T V VSH L ++
Sbjct: 171 QRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVFVSHDLDEALK 230
Query: 587 NANIIAVIQQGKIVEKGTHSELLENPYGAYNR----------------LIRLQETCKESE 630
N IA+++ G+I++ GT E++ NP Y L+R T ++ +
Sbjct: 231 IGNRIAIMEGGRIIQHGTPEEIVLNPANDYVADFVAHTNPLNVLTARDLMRPLTTLEKVD 290
Query: 631 KSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALL 690
+ D + K + P + A SL +L + +P+ P
Sbjct: 291 GEWCVSKRYDTWLKTADKQVR----RAAAGLPVAAWAAEQEVESLEKLPTVINPDTPMRD 346
Query: 691 LGAIASMTNGII 702
+ A T G I
Sbjct: 347 VLAARHRTGGAI 358
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 98.2 bits (245), Expect = 9e-23
Identities = 69/221 (31%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
D+ L IP G+ +AL+G SGSGK+T++ L+ P SG I G + + V+ + +
Sbjct: 19 DDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPVQ--ERNV 76
Query: 1090 GVVSQEPVLF-----------------------SDTIRANIAEMANANGFISGLQEGYDT 1126
G V Q LF IRA + E+ + L + Y
Sbjct: 77 GFVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQ-LDWLADRYPA 135
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI----ESERVVQDALDQVMV 1182
QLSGGQ+QRVA+ARA+ EPK+LLLDE ALD E R ++ D++ V
Sbjct: 136 -------QLSGGQRQRVALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHV 188
Query: 1183 DRTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
TT+ V H ++ A + V+++G I + G+ + +
Sbjct: 189 --TTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-23
Identities = 61/208 (29%), Positives = 99/208 (47%), Gaps = 25/208 (12%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL----Q 1081
V + + L+I G+ +A+VG SGSGKST++ LL +P+SG + +G + KL +
Sbjct: 18 TRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNER 77
Query: 1082 VKWLRQQMGVVSQ---------------EPVLFSDTIRANIAEMANANGFISGLQEGYDT 1126
K +++G + Q P+L E A GL+ +
Sbjct: 78 AKLRNKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKVGLEHRINH 137
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
E LSGG++QRVAIARA+V +P ++L DE T LD + +++ D + ++ + T
Sbjct: 138 RPSE----LSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNT 193
Query: 1187 --LVVAHRLSTIKNAHLIAVVSQGMIVE 1212
LVV H L K + + G +
Sbjct: 194 SFLVVTHDLELAKKLDRVLEMKDGQLFN 221
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 97.8 bits (244), Expect = 9e-23
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 27/222 (12%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP----SSGHITLDGVEIQKLQVKWLR 1086
DL L++ G+ +ALVGESGSGKS + P +SG I LDG + L ++
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPLSIR--G 61
Query: 1087 QQMGVVSQEPV-----LFS------DTIRANIAEMANANGFI------SGLQEGYDTLVG 1129
+ + + Q P LF+ +T+R+ A I GL + + ++
Sbjct: 62 RHIATIMQNPRTAFNPLFTMGNHAIETLRSLGKLSKQARALILEALEAVGLPDP-EEVLK 120
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT--L 1187
+ QLSGG QRV IA A++ EP L+ DE T+ LD+ ++ V L ++ T L
Sbjct: 121 KYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRELRQLFGTGIL 180
Query: 1188 VVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
++ H L + A +AV+ G IVE+G+ + + T
Sbjct: 181 LITHDLGVVARIADEVAVMDDGRIVERGTVKEIFYNPKHETT 222
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 9e-23
Identities = 76/210 (36%), Positives = 111/210 (52%), Gaps = 32/210 (15%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
LT+ G+ +A++G SG+GKST+++L+ F P+SG +TL+G + R+ + ++
Sbjct: 20 LTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVSMLF 77
Query: 1094 QEPVLFSD-TIRANIAEMANANGFISGL---------------QEGYDTLVGERGVQLSG 1137
QE LFS T+ NI G GL Q G + L+ QLSG
Sbjct: 78 QENNLFSHLTVAQNIGL-----GLNPGLKLNAAQREKLHAIARQMGIEDLLARLPGQLSG 132
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLST 1195
GQ+QRVA+AR +V+E ILLLDE SALD + + + QV +R T L+V+H L
Sbjct: 133 GQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE- 191
Query: 1196 IKNAHLIA----VVSQGMIVEKGSHESLIS 1221
+A IA VV+ G I G + L+S
Sbjct: 192 --DAARIAPRSLVVADGRIAWDGPTDELLS 219
|
Length = 232 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 1e-22
Identities = 60/182 (32%), Positives = 94/182 (51%), Gaps = 17/182 (9%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ---KLQVK 1083
+V D+ L I PG+ + L G SGSGK+T+++L+ G + + G E+ + ++
Sbjct: 19 QVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELV 78
Query: 1084 WLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFISGLQEGYD-----TLVG--ER---- 1131
LR+ +G + Q L T R N+ +S + VG +
Sbjct: 79 QLRRNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVGLGDHLDYY 138
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVV 1189
LSGGQKQRVAIARA+V PK++L DE T+ALD +S R V + + ++ ++ T L+V
Sbjct: 139 PHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIV 198
Query: 1190 AH 1191
H
Sbjct: 199 TH 200
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.3 bits (240), Expect = 1e-22
Identities = 58/186 (31%), Positives = 96/186 (51%), Gaps = 18/186 (9%)
Query: 1020 YPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI-- 1077
YP P EV + L G+ +AL+G +G+GKST++ L P SG + +DG +
Sbjct: 1 YPGGP--EVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDY 58
Query: 1078 -QKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA----EMANANGFISGLQEGYDTLVGE 1130
+K ++ RQ++G+V Q+P LF+ + ++A + + + T VG
Sbjct: 59 SRKGLLER-RQRVGLVFQDPDDQLFAADVDQDVAFGPLNLGLSEAEVERRVREALTAVGA 117
Query: 1131 RGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
G+ LSGG+K+RVAIA A+ P +LLLDE T+ LD + L ++ +
Sbjct: 118 SGLRERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLRAEG 177
Query: 1185 TTLVVA 1190
T+V++
Sbjct: 178 MTVVIS 183
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 1e-22
Identities = 71/233 (30%), Positives = 115/233 (49%), Gaps = 34/233 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+EL+ ++ S+ + L+G L + G + AL+G +G+GKST++ ++ Y P +GE+
Sbjct: 9 LELRGISKSFGG---VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEI 65
Query: 445 LIDGVNLKEFQLKWIREK----IGLVSQEPVLLSS-SIRDNIAYGKTHAT-------KEE 492
LIDG K R+ I V QE L+ + S+ +NI G+ K
Sbjct: 66 LIDG---KPVAFSSPRDALAAGIATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAM 122
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ A E L DT VG+ LS Q+Q V IARA+ D R+L+LDE T+
Sbjct: 123 RRRARELLARL----GLDIDPDTLVGD----LSIAQRQMVEIARALSFDARVLILDEPTA 174
Query: 553 ALD-SESGR---MVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIV 600
AL E+ R +++ + + +SHRL + A+ I V++ G++V
Sbjct: 175 ALTVKETERLFDLIRRLKAQ---GVAIIYISHRLDEVFEIADRITVLRDGRVV 224
|
Length = 500 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.5 bits (248), Expect = 1e-22
Identities = 62/236 (26%), Positives = 129/236 (54%), Gaps = 22/236 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++++++N++Y L G + I G + A++G +G+GKST+ + P +G +
Sbjct: 6 LKVEELNYNYS--DGTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHAT--KEEIQAAAE 498
L DG ++ L +RE +G+V Q+P L S+S+ ++++G + ++E++ +
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD--- 555
A I++L + H LS GQK+RVAIA ++ +P++L+LDE T+ LD
Sbjct: 124 NALKRTGIEHL-----KDKPTHC--LSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMG 176
Query: 556 -SESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELL 609
SE +++ E + + T +I +H + ++ + + V+++G+++ +G E+
Sbjct: 177 VSEIMKLLVEMQKELGL--TIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVF 230
|
Length = 283 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-22
Identities = 69/239 (28%), Positives = 121/239 (50%), Gaps = 16/239 (6%)
Query: 385 IELKDVNFSY-PARPDEQI-LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I+ ++V++ Y P P E+ L+ + G+ ALVG +GSGKST++ P +G
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 443 EVLIDG----VNLKEFQLKWIREKIGLVSQ--EPVLLSSSIRDNIAYGKTHATKEEIQAA 496
+ I G LK +R+K+ LV Q E L +++ ++ +G + E +A
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAK 122
Query: 497 AEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
+A ++K + GL ++ +LSGGQ +RVAIA M +P IL LDE + LD
Sbjct: 123 EKALK---WLKKV--GLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLD 177
Query: 556 SESGR-MVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
E + M+Q D T ++V+H + + A+ + V++ GK+++ + E+ +
Sbjct: 178 PEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDK 236
|
Length = 287 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.4 bits (245), Expect = 1e-22
Identities = 76/236 (32%), Positives = 120/236 (50%), Gaps = 13/236 (5%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVIS----LIQRFYDPQ- 440
++ +N Y L L IP + A++G SG GKST I +IQ + +
Sbjct: 14 QINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKL 70
Query: 441 AGEVLIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAA 497
GE+ +G N+ + L +R+ IG+V Q+ SI DN+AYG + H TK + +
Sbjct: 71 TGEMNYNGSNILKGKVDLVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNK-KKLQ 129
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E S L + + + LSGGQ+QR+ IARA+ +P +LL+DE TSALD
Sbjct: 130 EIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPV 189
Query: 558 SGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
S R ++E + ++ T VIV+H + R ++ A G++VE +++ NP
Sbjct: 190 STRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNP 245
|
Length = 259 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.1 bits (244), Expect = 2e-22
Identities = 68/216 (31%), Positives = 108/216 (50%), Gaps = 23/216 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QK 1079
+ +++ L IP AL+G SG GKST I L R D GHI LDGV+I
Sbjct: 17 HILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPA 76
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANG-----FI----------SGLQEGY 1124
+ V LR+++G+V Q+P F +I N+A +G FI + L +
Sbjct: 77 VDVVELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEV 136
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + + LSGGQ+QR+ IAR I P+++L+DE SALD S ++D + ++ D
Sbjct: 137 KDKLDKSALGLSGGQQQRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDY 196
Query: 1185 TTLVVAHRL-STIKNAHLIAVVSQGMIVEKGSHESL 1219
T ++V H + + + + G I+E G + +
Sbjct: 197 TIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232
|
Length = 250 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 2e-22
Identities = 63/217 (29%), Positives = 106/217 (48%), Gaps = 22/217 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI-QKL 1080
+ + + L IP + AL+G SG GKST++ L R D +G +T+DG +I +
Sbjct: 17 QALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI 76
Query: 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFI---------------SGLQEGYD 1125
V LR ++G+V Q+P F +I N+A A G + L +
Sbjct: 77 DVADLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVK 136
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
+ LSGGQ+QR+ IAR I EP ++L+DE TSALD + +++ ++++ + T
Sbjct: 137 DRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYT 196
Query: 1186 TLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
++V H + + + A G +VE + + S
Sbjct: 197 IVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFS 233
|
Length = 249 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.4 bits (242), Expect = 2e-22
Identities = 66/204 (32%), Positives = 105/204 (51%), Gaps = 20/204 (9%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS---GHITLDGVEIQKLQVKWLRQ 1087
D+ + I K AL+G SG GKST + R D + G + ++G +++ V LR+
Sbjct: 20 DINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALRK 79
Query: 1088 QMGVVSQEPVLFSDTIRANIAEMANANGFIS----------------GLQEGYDTLVGER 1131
+G+V Q+P +F +I NI+ +G I GL E + +
Sbjct: 80 NVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQN 139
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191
+ LSGGQ+QR+ IARA+ +PK+LLLDE TSALD S V+++ L ++ + + ++V H
Sbjct: 140 ALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTH 199
Query: 1192 RLSTIKN-AHLIAVVSQGMIVEKG 1214
+ K A A G ++E G
Sbjct: 200 NMQQGKRVADYTAFFHLGELIEFG 223
|
Length = 246 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-22
Identities = 63/160 (39%), Positives = 83/160 (51%), Gaps = 31/160 (19%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
EV +L LTI G+ + L+G SG GK+TV+ L+ F P SG I LDG +I + +
Sbjct: 28 EVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--N 85
Query: 1087 QQMGVVSQEPVLFSD-TIRANIAEMANANGFISGL------QEGYDTLVGE--------- 1130
+ + V Q LF T+ N+A F GL V E
Sbjct: 86 RHVNTVFQSYALFPHMTVFENVA-------F--GLRMQKTPAAEITPRVMEALRMVQLEE 136
Query: 1131 ----RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
+ QLSGGQ+QRVAIARA+V +PK+LLLDE+ SALD
Sbjct: 137 FAQRKPHQLSGGQQQRVAIARAVVNKPKVLLLDESLSALD 176
|
Length = 375 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 2e-22
Identities = 58/228 (25%), Positives = 105/228 (46%), Gaps = 46/228 (20%)
Query: 385 IELKDVNFSYPARP---DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDP 439
+ +++ + + P +Q+L G + A++G SG+GKST+++ + +R
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAE 498
+GEVLI+G L + R+ IG V Q+ +L + ++R+ + +
Sbjct: 64 VSGEVLINGRPLD---KRSFRKIIGYVPQDDILHPTLTVRETLMF--------------- 105
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
AA LSGG+++RV+IA ++ +P +L LDE TS LDS S
Sbjct: 106 AAKLR-------------------GLSGGERKRVSIALELVSNPSLLFLDEPTSGLDSSS 146
Query: 559 GRMVQEALDR-VMINRTTVIVSHRLS--LIRNANIIAVIQQGKIVEKG 603
V L R RT + H+ S + + + ++ QG+++ G
Sbjct: 147 ALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.8 bits (243), Expect = 2e-22
Identities = 69/257 (26%), Positives = 126/257 (49%), Gaps = 34/257 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I++ +++F Y ++IL G + I + A++G SG GKST + + R + + EV
Sbjct: 8 IKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELE-SEV 63
Query: 445 LIDG--------VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT----HATKEE 492
++G + + L +R ++ +V +P L S+ DN+AYG E
Sbjct: 64 RVEGRVEFFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEI 123
Query: 493 ---IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+++A + A+ IK+ + + + LSGGQ+QR+ IARA+ P++LL+DE
Sbjct: 124 DDIVESALKDADLWDEIKH-------KIHKSALDLSGGQQQRLCIARALAVKPKVLLMDE 176
Query: 550 ATSALDSESGRMVQEALDRVMINR--TTVIVSHRLSLI-RNANIIAVIQQ-----GKIVE 601
LD + V+ + + + T VIVSH L + R ++ A + G++VE
Sbjct: 177 PCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVE 236
Query: 602 KGTHSELLENPYGAYNR 618
G ++ +P+ + R
Sbjct: 237 FGLTKKIFNSPHDSRTR 253
|
Length = 261 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 2e-22
Identities = 75/246 (30%), Positives = 122/246 (49%), Gaps = 27/246 (10%)
Query: 384 DIELKDVNFSYPAR-PDEQI-LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
DI + V Y + P E+ L + IP+G+ A++G +GSGKST++ + P +
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 442 GEVLIDGVNL----KEFQLKWIREKIGLVSQ--EPVLLSSSIRDNIAYGKTHATKEEIQA 495
G V I + K +LK +R+K+G+V Q E L ++ +I +G + E A
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+A + GL + +LSGGQ +RVAIA + +P +L+LDE T+ L
Sbjct: 122 KQKAREMIELV-----GLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGL 176
Query: 555 DSESGRMVQEALDRVMI-------NRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHS 606
D GR +E ++ M TTV+V+H + R A+ I V+ +G + +GT
Sbjct: 177 DP-KGR--KEMME--MFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPR 231
Query: 607 ELLENP 612
E+ +P
Sbjct: 232 EIFADP 237
|
Length = 290 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 98.0 bits (244), Expect = 3e-22
Identities = 63/230 (27%), Positives = 115/230 (50%), Gaps = 16/230 (6%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
G++ ++ KY + V ++ +I PG+ + L+G +GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKYTEGGN-AVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEG 58
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN--------------IAEMANAN 1114
I +DGV + ++ R+ GV+ Q+ +FS T R N +AE
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLK 118
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
I D ++ + G LS G KQ + +AR+++ + KILLLDE ++ LD + +V++
Sbjct: 119 SVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQVIR 178
Query: 1175 DALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
L Q D T ++ HR+ + V+ + + + S + L++ K+
Sbjct: 179 KTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNEKS 228
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 97.4 bits (243), Expect = 3e-22
Identities = 64/236 (27%), Positives = 114/236 (48%), Gaps = 27/236 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IELK+V+ + IL + G A+VG +G+GK+T++SL+ + P +G+V
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 445 LIDGVNLKEFQLKW-IREKIGLVS---QEPVLLSSSIRDNIAYGKTHAT--------KEE 492
+ G + + + +R++IGLVS E + ++RD + G A+ E
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGF-FASIGIYQEDLTAE 147
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
AAA+ K+L D G LS G+++RV IARA++KDP +L+LDE
Sbjct: 148 DLAAAQWLLELLGAKHL---ADRPFG----SLSQGEQRRVLIARALVKDPELLILDEPAQ 200
Query: 553 ALDSESGRMVQEALDRVMINR---TTVIVSHRLS-LIRNANIIAVIQQGKIVEKGT 604
LD + + L+ + + + V+H + ++++G++V +G
Sbjct: 201 GLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256
|
Length = 257 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 97.1 bits (242), Expect = 4e-22
Identities = 78/239 (32%), Positives = 117/239 (48%), Gaps = 43/239 (17%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEI--QK 1079
+ D+ L IP A +G SG GKST + L R D +G ITLDG +I +
Sbjct: 33 QALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFI----------------SGLQEG 1123
L V LR ++G+V Q+P F +I N+A +G +GL E
Sbjct: 93 LDVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEE 152
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
+ E G LSGGQ+QR+ IARAI P+++L+DE SALD + V++ +D++ +
Sbjct: 153 VKDRLHEPGTGLSGGQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQN 212
Query: 1184 RTTLVVAHRLSTIKNAHLIAVVSQ-------GMIVEKGSHESLISTKNGIYTSLIEPHT 1235
T ++V H +++ A A VSQ G +VE G E ++T+ +P T
Sbjct: 213 YTIVIVTH---SMQQA---ARVSQRTAFFHLGNLVEVGDTEK-------MFTNPDDPRT 258
|
Length = 267 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 99.0 bits (247), Expect = 4e-22
Identities = 70/223 (31%), Positives = 108/223 (48%), Gaps = 25/223 (11%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460
L L + G L+G SG GK+T++ +I AG + G ++ +L +
Sbjct: 18 TALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDIT--RLPPQK 75
Query: 461 EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGE 519
G+V Q L + ++ DNIAYG + + A A + GL + +
Sbjct: 76 RDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV-----GLPGSERK 130
Query: 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM------INR 573
+ QLSGGQ+QRVA+ARA+ P +LLLDE SALD+ V+E L + +
Sbjct: 131 YPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQRRLGV 186
Query: 574 TTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
TT++V+H LS+ A+ I V+ G I + GT E+ +P
Sbjct: 187 TTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGTPQEIYRHP 226
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 95.6 bits (239), Expect = 5e-22
Identities = 54/212 (25%), Positives = 103/212 (48%), Gaps = 23/212 (10%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085
++ + LT+P G+ +AL+G +G+GK+T++ + P SG I DG +I L
Sbjct: 13 SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPP-HE 71
Query: 1086 RQQMGV--VSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLV----------GERG 1132
R + G+ V + +F + T+ N+ + + + + + +
Sbjct: 72 RARAGIGYVPEGRRIFPELTVEENL-LLGAYARRRAKRKARLERVYELFPRLKERRKQLA 130
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ---DALDQVMVDRTT-LV 1188
LSGG++Q +AIARA++ PK+LLLDE + L + ++V+ +A+ ++ + T L+
Sbjct: 131 GTLSGGEQQMLAIARALMSRPKLLLLDEPSEGL---APKIVEEIFEAIRELRDEGVTILL 187
Query: 1189 VAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
V A V+ +G +V +G+ L
Sbjct: 188 VEQNARFALEIADRAYVLERGRVVLEGTAAEL 219
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 98.3 bits (244), Expect = 5e-22
Identities = 69/235 (29%), Positives = 117/235 (49%), Gaps = 9/235 (3%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQ 440
E+++ NF Y R + +L+ L I + A +G SG GKST + + + D
Sbjct: 82 EIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSH 140
Query: 441 AGEVLIDGVNLKEFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
GE+ G N + ++ + R +IG+V Q+P SI DN+AYG + + + +
Sbjct: 141 EGEIYFLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEK 200
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
S L + ++ + G LSGGQ+QR+ IARA+ +P +LL+DE TSALD +
Sbjct: 201 IVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIA 260
Query: 559 GRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
++E + + + +IV+H ++ R ++ QG I E G + +P
Sbjct: 261 TAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHP 315
|
Length = 329 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 96.7 bits (241), Expect = 5e-22
Identities = 72/224 (32%), Positives = 108/224 (48%), Gaps = 27/224 (12%)
Query: 1016 VSFKYPT------RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
+S Y H V ++ L++ G+T+AL+G SG GKST+ LL PS G+
Sbjct: 9 LSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGN 68
Query: 1070 ITLDGVEIQKL---QVKWLRQQMGVVSQEP---VLFSDTIRANIAE---------MANAN 1114
++ G + KL Q K R+ + +V Q+ V T+R I E A
Sbjct: 69 VSWRGEPLAKLNRAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERL 128
Query: 1115 GFISGLQEGYD---TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
S + D +++ +R QLSGGQ QRV +ARA+ EPK+L+LDEA S LD+ +
Sbjct: 129 ARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLDLVLQA 188
Query: 1172 VVQDALDQVMVDRTT--LVVAHRLSTIKN-AHLIAVVSQGMIVE 1212
V L ++ T L + H L ++ + V+ G IVE
Sbjct: 189 GVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVE 232
|
Length = 268 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (241), Expect = 6e-22
Identities = 72/230 (31%), Positives = 108/230 (46%), Gaps = 45/230 (19%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QK 1079
+ D+ + IP + A +G SG GKST++ R D G I LDG I +K
Sbjct: 39 QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKK 98
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF-ISGLQ----------------- 1121
+ V LR+++G+V Q P F +I N+ G + G+
Sbjct: 99 VDVAELRRRVGMVFQRPNPFPKSIYENVVY-----GLRLQGINNRRVLDEAVERSLRGAA 153
Query: 1122 ---EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
E D L E LSGGQ+QR+ IARAI EP++LLLDE TSALD S +++ +
Sbjct: 154 LWDEVKDRL-HENAFGLSGGQQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELIT 212
Query: 1179 QVMVDRTTLVVAH------RLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222
++ T ++V H R+S A + G +VE G ++L ++
Sbjct: 213 ELKSKYTIVIVTHNMQQAARVS-----DYTAFMYMGKLVEYGDTDTLFTS 257
|
Length = 272 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-22
Identities = 65/230 (28%), Positives = 114/230 (49%), Gaps = 9/230 (3%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ L V++S R I++G + P G++ L+G +GSGKST++ L+ P AG
Sbjct: 1 GLRLSRVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGT 57
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQE-PVLLSSSIRDNIAYGKT-HATKEEIQAAAEAAN 501
V + GV+L + ++ LV Q+ + ++RD +A G+ H + + +AA
Sbjct: 58 VDLAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV 117
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ L LSGG++QRV +ARA+ ++P++LLLDE T+ LD +
Sbjct: 118 VDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQLE 175
Query: 562 VQEALDRVMINRTTVIVS-HRLSL-IRNANIIAVIQQGKIVEKGTHSELL 609
+ + TV+ + H L+L + + V+ G++V G E+L
Sbjct: 176 TLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVL 225
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 101 bits (253), Expect = 6e-22
Identities = 71/258 (27%), Positives = 115/258 (44%), Gaps = 51/258 (19%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I L++++ +Y RP +L L + G LVG +G+GKST++ ++ +P +GE
Sbjct: 3 MITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGE 59
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG------------------ 484
V ++G +SQEP L ++ D + G
Sbjct: 60 VTRPKG-----------LRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALL 108
Query: 485 -----KTHATKEEIQAAAEAANASHFIKNLPQGL-----DTNVGEHGIQLSGGQKQRVAI 534
+ A E + + + GL D V LSGG ++RVA+
Sbjct: 109 ADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSS----LSGGWRRRVAL 164
Query: 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAV 593
ARA++++P +LLLDE T+ LD ES +++ L R T ++VSH + N A I
Sbjct: 165 ARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKR--YPGTVIVVSHDRYFLDNVATHILE 222
Query: 594 IQQGKIVE-KGTHSELLE 610
+ +GK+ KG +S LE
Sbjct: 223 LDRGKLTPYKGNYSSYLE 240
|
Length = 530 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.2 bits (240), Expect = 6e-22
Identities = 68/236 (28%), Positives = 127/236 (53%), Gaps = 20/236 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +++V+ SY + +L+ L IP G I +++G +G+GKST++S++ R +GE+
Sbjct: 2 ITIENVSKSYGTKV---VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG-----KTHATKEEIQAAAE 498
IDG+ L K + +K+ ++ QE + S ++RD + +G + TKE+ + E
Sbjct: 59 TIDGLELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINE 118
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A H + LD +LSGGQ+QR IA + +D +LLDE + LD +
Sbjct: 119 AIEYLHLEDLSDRYLD--------ELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 559 GRMVQEALDRVM--INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLEN 611
+ + L R+ + +T V+V H ++ ++ I ++ GK+V++G+ E+++
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGSPDEIIQP 226
|
Length = 252 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 7e-22
Identities = 62/219 (28%), Positives = 106/219 (48%), Gaps = 39/219 (17%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
D+ L + PG+ + L+G +G+GK+T+ +L+ FY PSSG + G +I L ++
Sbjct: 21 NDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH-RIARL 79
Query: 1090 GVVS--QEPVLFSD-TIRANIAEMANANGFIS--------------------------GL 1120
G+ Q LF T+ N+A A+A +S GL
Sbjct: 80 GIARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGL 139
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESERVVQDALDQ 1179
E D G LS GQ++R+ IARA+ +PK+LLLDE + L+ E+E + + + +
Sbjct: 140 GELADRPAGN----LSYGQQRRLEIARALATQPKLLLLDEPAAGLNPEETEELA-ELIRE 194
Query: 1180 V--MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ T L++ H + + A I V++ G ++ +G+
Sbjct: 195 LRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGT 233
|
Length = 250 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 7e-22
Identities = 74/215 (34%), Positives = 115/215 (53%), Gaps = 20/215 (9%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
D+ LTI G+ AL+G SG GKST++ +L F P++G I LDGV++ V ++ +
Sbjct: 37 DVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLS--HVPPYQRPIN 94
Query: 1091 VVSQEPVLFSD-TIRANIA----EMANANGFISGLQEGYDTLV------GERGVQLSGGQ 1139
++ Q LF T+ NIA + I+ LV + QLSGGQ
Sbjct: 95 MMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFAKRKPHQLSGGQ 154
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIE-SERV---VQDALDQVMVDRTTLVVAH-RLS 1194
+QRVA+AR++ K PK+LLLDE ALD + +R+ V D L++V V T ++V H +
Sbjct: 155 RQRVALARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGV--TCVMVTHDQEE 212
Query: 1195 TIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
+ A IA++++G V+ G E + Y++
Sbjct: 213 AMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRYSA 247
|
Length = 377 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.8 bits (241), Expect = 8e-22
Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 21/238 (8%)
Query: 385 IELKDVNFSY-PARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I +V+++Y P E Q ++ G A+VG +GSGKST+I I P G
Sbjct: 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTG 62
Query: 443 EVLIDGVNL----KEFQLKWIREKIGLVSQ--EPVLLSSSIRDNIAYGKTH--ATKEEIQ 494
V +D + + K+ ++ +R++IG+V Q E L ++ I +G + +E++
Sbjct: 63 TVTVDDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVK 122
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A + G +V Q+SGGQ +++AI + +P I++LDE T+
Sbjct: 123 NYA-------HRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAG 175
Query: 554 LDSESGRMVQEALDRVMI--NRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSEL 608
LD +S R V L + N+T ++VSH ++ + R A+ + V+++G IV + + EL
Sbjct: 176 LDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKEL 233
|
Length = 286 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 96.5 bits (240), Expect = 8e-22
Identities = 78/283 (27%), Positives = 137/283 (48%), Gaps = 19/283 (6%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
G + +KD+ Y +L I G L+G +GSGKST++S R + + G
Sbjct: 1 GQMTVKDLTAKY-TEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE-G 58
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI-AYGKTHATKEEIQAAAEAAN 501
++ IDGV+ L+ R+ G++ Q+ + S + R N+ YGK + EEI AE
Sbjct: 59 DIQIDGVSWNSVPLQKWRKAFGVIPQKVFIFSGTFRKNLDPYGKW--SDEEIWKVAEEVG 116
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
I+ P LD + + G LS G KQ + +AR+++ +ILLLDE ++ LD + ++
Sbjct: 117 LKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPITYQV 176
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
+++ L + + T ++ HR+ + VI++ K+ + + +LL N
Sbjct: 177 IRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLL-------NEKSH 229
Query: 622 LQETCKESEK----SAVNNSDSDNQPFASPKITTPKQSETESD 660
++ S++ N+S S +P P+I Q ETE +
Sbjct: 230 FKQAISPSDRLKLFPRRNSSKSKRKP--RPQIQA-LQEETEEE 269
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (252), Expect = 8e-22
Identities = 58/202 (28%), Positives = 91/202 (45%), Gaps = 54/202 (26%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + +S Y RP + ++ LT+ PG+ I LVG +G+GKST++ +L +P S
Sbjct: 1 MSMITLENLSLAYGDRP---LLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDS 57
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANI------------------A 1108
G +T ++G +SQEP L + T+ + A
Sbjct: 58 GEVTRPKGL-----------RVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYA 106
Query: 1109 EMANANGF----ISGLQEGYDTLVGERGV-----------------QLSGGQKQRVAIAR 1147
+A+ + + L E D E LSGG ++RVA+AR
Sbjct: 107 LLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALAR 166
Query: 1148 AIVKEPKILLLDEATSALDIES 1169
A+++EP +LLLDE T+ LD+ES
Sbjct: 167 ALLEEPDLLLLDEPTNHLDLES 188
|
Length = 530 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 8e-22
Identities = 72/247 (29%), Positives = 120/247 (48%), Gaps = 16/247 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--- 441
I++KD++F Y + + G + I + A++G SG GKST I + R + +
Sbjct: 8 IKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVK 64
Query: 442 --GEVLIDGVNLKE--FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
G V G N+ + + +R +IG+V Q P SI +N+AYG + K
Sbjct: 65 VEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLD 124
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E ++ L Q + + + + LSGGQ+QR+ IARA+ P++LL+DE SALD
Sbjct: 125 EIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCSALDPI 184
Query: 558 SGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQ-----GKIVEKGTHSELLEN 611
+ V+E + + T IV+H + R ++ A G++VE G +++ N
Sbjct: 185 ATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIFSN 244
Query: 612 PYGAYNR 618
P + R
Sbjct: 245 PLDSRTR 251
|
Length = 259 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 8e-22
Identities = 74/244 (30%), Positives = 119/244 (48%), Gaps = 27/244 (11%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQ--- 440
E+ +NF Y Q L +++ + AL+G SG GKST + R +D P
Sbjct: 18 EVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHY 74
Query: 441 AGEVLI--DGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-------KTHAT 489
GE+++ D VN+ E +R +I +V Q+P SI +N+AYG +
Sbjct: 75 EGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSIL 134
Query: 490 KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+E ++ A A +K+ +G+ LSGGQ+QR+ IARA+ DP ILL DE
Sbjct: 135 EERVENALRNAALWDEVKD-------RLGDLAFNLSGGQQQRLCIARALATDPEILLFDE 187
Query: 550 ATSALDSESGRMVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSEL 608
TSALD + ++E + + T +IV+H + R ++ A + G+++E G +
Sbjct: 188 PTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTI 247
Query: 609 LENP 612
P
Sbjct: 248 FIKP 251
|
Length = 265 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.7 bits (238), Expect = 9e-22
Identities = 63/213 (29%), Positives = 102/213 (47%), Gaps = 24/213 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QK 1079
++ D+ L I + A +G SG GKST + R D G + +DG+++
Sbjct: 19 QILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVD 78
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS----------------GLQEG 1123
V LR ++G+V Q+P F +I N+A +G GL E
Sbjct: 79 TNVVLLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEE 138
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
+ + +LSGGQ+QR+ IARAI +P +LL+DE SALD + V+++ + ++ +
Sbjct: 139 LGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKN 198
Query: 1184 RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
T +VV H + K + +A G IVE +
Sbjct: 199 FTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNT 231
|
Length = 251 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 9e-22
Identities = 64/212 (30%), Positives = 105/212 (49%), Gaps = 23/212 (10%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QKLQVK 1083
D+ L + AL+G SG GKST + L R D G I LDG I + V
Sbjct: 24 DISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDVV 83
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANANG-----FI----------SGLQEGYDTLV 1128
LR+++G+V Q+P F +I N+A NG ++ + L + +
Sbjct: 84 ELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRL 143
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
E + LSGGQ+QR+ IARA+ EP++LL+DE SALD + + +++ + ++ T ++
Sbjct: 144 HESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIII 203
Query: 1189 VAHRL-STIKNAHLIAVVSQGMIVEKGSHESL 1219
V H + + + + A G ++E G E +
Sbjct: 204 VTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235
|
Length = 253 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.9 bits (238), Expect = 1e-21
Identities = 68/222 (30%), Positives = 116/222 (52%), Gaps = 26/222 (11%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV------EIQKLQ 1081
+ +D+ + IP ++G SGSGKST++ +L R + I +DG +I ++
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 1082 VKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF----------------ISGLQEGY 1124
LR+++G+V Q+P F +I NIA ++G + +E Y
Sbjct: 85 AIKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVY 144
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
D L QLSGGQ+QR+ IARA+ +PK+LL+DE TS +DI + + ++ + ++ +
Sbjct: 145 DRL-NSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEI 203
Query: 1185 TTLVVAHRLSTI-KNAHLIAVVSQGMIVEKG-SHESLISTKN 1224
++V+H + + A +A + G +VE G S+E S KN
Sbjct: 204 AIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKN 245
|
Length = 257 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 1e-21
Identities = 65/224 (29%), Positives = 113/224 (50%), Gaps = 20/224 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ELK V + D +ILN L + G A+ G SG GKST++ ++ P +G +
Sbjct: 4 LELKQVGY---LAGDAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTL 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAY-GKTHATKEEIQAAAEAANAS 503
L +G ++ + + R+++ +Q P L ++ DN+ + + + + AA +
Sbjct: 61 LFEGEDVSTLKPEAYRQQVSYCAQTPALFGDTVEDNLIFPWQIRNRRPDRAAALD----- 115
Query: 504 HFIKNLPQG---LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ L N+ E LSGG+KQR+A+ R + P+ILLLDE TSALD + R
Sbjct: 116 -LLARFALPDSILTKNITE----LSGGEKQRIALIRNLQFMPKILLLDEITSALDESNKR 170
Query: 561 MVQEALDRVMI--NRTTVIVSH-RLSLIRNANIIAVIQQGKIVE 601
++E + R + N + ++H + IR+A+ + +Q G E
Sbjct: 171 NIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214
|
Length = 223 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-21
Identities = 58/176 (32%), Positives = 91/176 (51%), Gaps = 14/176 (7%)
Query: 393 SYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452
SY +P L L I +G + ++G SG GK+T+++LI F P G + ++G
Sbjct: 12 SYEGKP-RSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGR--- 67
Query: 453 EFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQ 511
+++ + G+V Q LL ++ DN+A+G I+ A A + +
Sbjct: 68 --RIEGPGAERGVVFQNEALLPWLNVIDNVAFGLQLRG---IEKAQRREIAHQMLALV-- 120
Query: 512 GLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
GL+ I QLSGG +QRV IARA+ +P++LLLDE ALD+ + +QE L
Sbjct: 121 GLE-GAEHKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTREQMQELL 175
|
Length = 259 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.1 bits (237), Expect = 1e-21
Identities = 64/210 (30%), Positives = 105/210 (50%), Gaps = 24/210 (11%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG------VEIQKLQVKW 1084
D+ L P G+T+ L+G SG+GKS+++ +L P SG + + G ++
Sbjct: 20 DITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79
Query: 1085 LRQQMGVVSQEPVLFSD-TIRANIAE-------------MANANGFISGLQEGYDTLVGE 1130
LR+ +G+V Q+ L+ T++ N+ E +A A + L+
Sbjct: 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERLR--LKPYADR 137
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-SERVVQDALDQVMVDRTTLVV 1189
+ LSGGQ+QRVAIARA++ EP++LL DE T+ALD E + ++V + T ++V
Sbjct: 138 FPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIV 197
Query: 1190 AHRLSTI-KNAHLIAVVSQGMIVEKGSHES 1218
H + K A + + G IVE+G
Sbjct: 198 THEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 1e-21
Identities = 73/252 (28%), Positives = 124/252 (49%), Gaps = 32/252 (12%)
Query: 380 DIRGDIELKDVNFSYPAR-PDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437
D DI L +V+++Y + P E + LN L + ++GT+GSGKST+I L
Sbjct: 2 DFSKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLI 61
Query: 438 DPQAGEVLIDG----VNLKEF-QLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTH--A 488
+ G+ ++ NLK+ ++K +R++IGLV Q P L +I +IA+G +
Sbjct: 62 ISETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGE 121
Query: 489 TKEEIQAAAEAANASHFIKNLPQGLD------TNVGEHGIQLSGGQKQRVAIARAMIKDP 542
K+E K +P+ L V +LSGGQK+RVA+A + D
Sbjct: 122 NKQEA------------YKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDG 169
Query: 543 RILLLDEATSALDSESGRMVQEALDRVMIN--RTTVIVSHRL-SLIRNANIIAVIQQGKI 599
L+LDE T LD + +R+ + ++V+H + ++R A+ + V+ +GK+
Sbjct: 170 NTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKV 229
Query: 600 VEKGTHSELLEN 611
+ G+ E+ N
Sbjct: 230 ISIGSPFEIFSN 241
|
Length = 289 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 1e-21
Identities = 65/183 (35%), Positives = 92/183 (50%), Gaps = 20/183 (10%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-------HITLDGVEIQKLQVK 1083
D+ L IP K IA +G SG GKST++ R D G + ++
Sbjct: 38 DVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSV 97
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGY-DTL------------VGE 1130
LR+Q+G+V Q P F +I NIA ANG+ L E D+L + E
Sbjct: 98 KLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVKDKLKE 157
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190
+G LSGGQ+QR+ IARAI +P +LL+DE SALD S R V++ ++ T ++V
Sbjct: 158 KGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVT 217
Query: 1191 HRL 1193
H +
Sbjct: 218 HNM 220
|
Length = 274 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 69/228 (30%), Positives = 112/228 (49%), Gaps = 19/228 (8%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
IE+ ++ + E IL G L++ G A+VG SGSGKST+++++ DP +GE
Sbjct: 7 IEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGE 66
Query: 444 VLIDG---VNLKEFQLKWIR-EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAE 498
V + G L E +R +G V Q L+ + + +N+A E++ +
Sbjct: 67 VRLLGQPLHKLDEDARAALRARHVGFVFQSFHLIPNLTALENVA------LPLELRGESS 120
Query: 499 AANASHFIKNLPQ-GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
A + + L GL + + QLSGG++QRVA+ARA P +L DE T LD
Sbjct: 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRA 180
Query: 558 SGRMVQEALDRVMINR----TTVIVSHRLSLIRNANIIAVIQQGKIVE 601
+G + + L +NR T V+V+H L + ++ G++VE
Sbjct: 181 TGDKIADLL--FALNRERGTTLVLVTHDPQLAARCDRQLRLRSGRLVE 226
|
Length = 228 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-21
Identities = 62/188 (32%), Positives = 89/188 (47%), Gaps = 25/188 (13%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---Q 1081
+ + + + L + G+T+A+VG SGSGKST++++L DPSSG + L G + KL
Sbjct: 22 ELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDA 81
Query: 1082 VKWLR-QQMGVVSQE---------------PVLFSDTIRANIAEMANANGFISGLQEGYD 1125
LR + +G V Q P+ A+ A A GL +
Sbjct: 82 RAALRARHVGFVFQSFHLIPNLTALENVALPLELRGESSADSRAGAKALLEAVGLGKRLT 141
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR- 1184
QLSGG++QRVA+ARA P +L DE T LD + + D L + +R
Sbjct: 142 HYPA----QLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERG 197
Query: 1185 TTLV-VAH 1191
TTLV V H
Sbjct: 198 TTLVLVTH 205
|
Length = 228 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 1e-21
Identities = 60/227 (26%), Positives = 107/227 (47%), Gaps = 30/227 (13%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458
++ILN L +P G I AL+G +G GKST++ R PQ+G V + + +
Sbjct: 14 TKRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQ 73
Query: 459 IREKIGLVSQEPVLLSS-SIRDNIAYGK----------THATKEEIQAAAEAANASHFIK 507
+ ++ L+ Q + ++R+ +AYG+ + + A E +H
Sbjct: 74 LARRLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLA- 132
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD----SESGRMVQ 563
D + + LSGGQ+QR +A + +D ++LLDE T+ LD E R+++
Sbjct: 133 ------DRRLTD----LSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMR 182
Query: 564 EALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELL 609
E + +T V V H L+ R + + V+ G ++ +GT E++
Sbjct: 183 ELNTQ---GKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVM 226
|
Length = 255 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 1e-21
Identities = 77/246 (31%), Positives = 121/246 (49%), Gaps = 38/246 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE+ ++ S+ Q+LN L IP+G + AL+G SGSGK+T++ +I +G +
Sbjct: 3 IEIANIKKSFGRT---QVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT----------HATKEEI 493
G ++ + K+G V Q L ++ DNIA+G T A K ++
Sbjct: 60 RFHGTDVSRLHAR--DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKV 117
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
E +H P QLSGGQKQRVA+ARA+ +P+ILLLDE A
Sbjct: 118 TQLLEMVQLAHLADRYPA-----------QLSGGQKQRVALARALAVEPQILLLDEPFGA 166
Query: 554 LDSESGRMVQEALDRVM------INRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHS 606
LD++ V++ L R + + T+V V+H + + A+ + V+ QG I + GT
Sbjct: 167 LDAQ----VRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPD 222
Query: 607 ELLENP 612
++ P
Sbjct: 223 QVWREP 228
|
Length = 353 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 1e-21
Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 21/188 (11%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA---GEVLIDGVNL--KEFQLKWIR 460
L IP I A +G SG GKST++ R D P G+V G NL + +R
Sbjct: 31 LDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDPVEVR 90
Query: 461 EKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQG-----LD 514
+IG+V Q+P SI DNIAYG + + K ++ E ++L Q +
Sbjct: 91 RRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVE--------RSLRQAALWDEVK 142
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRT 574
+ + G+ LSGGQ+QR+ IARA+ P ++L+DE SALD S ++E + + T
Sbjct: 143 DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYT 202
Query: 575 TVIVSHRL 582
+IV+H +
Sbjct: 203 IIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 97.2 bits (242), Expect = 2e-21
Identities = 72/213 (33%), Positives = 107/213 (50%), Gaps = 28/213 (13%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL----R 1086
D L I G+ ++G SGSGKST + +L R +P++G I +DG I K L R
Sbjct: 11 DADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRR 70
Query: 1087 QQMGVVSQEPVLFSD-TIRANIA---EMANANGFISGLQEGYD------TLVGERGV--- 1133
+++G+V Q+ LF TI N + E+ QE + LVG
Sbjct: 71 KKIGMVFQQFALFPHMTILQNTSLGPELLGWPE-----QERKEKALELLKLVGLEEYEHR 125
Query: 1134 ---QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLV 1188
+LSGG +QRV +ARA+ EP ILL+DEA SALD +QD L Q + +T +
Sbjct: 126 YPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATLQKTIVF 185
Query: 1189 VAHRL-STIKNAHLIAVVSQGMIVEKGSHESLI 1220
+ H L I+ I ++ G IV+ G+ + ++
Sbjct: 186 ITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEIL 218
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 57/187 (30%), Positives = 91/187 (48%), Gaps = 22/187 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK-- 1079
E + + + K AL+G SGSGKST + L R D +G I G++I +
Sbjct: 34 EAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFI---------------SGLQEGY 1124
+ V +R+ +G+V Q P F+ +I NI G + L +
Sbjct: 94 INVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV 153
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + + LSGGQ+QR+ IARAI +P ILL+DE SALD S +++ + ++ +
Sbjct: 154 KDDLHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNY 213
Query: 1185 TTLVVAH 1191
T ++V H
Sbjct: 214 TIIIVTH 220
|
Length = 267 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 2e-21
Identities = 63/227 (27%), Positives = 108/227 (47%), Gaps = 26/227 (11%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ VS + + + DL + PG+ A+VG +G+GK+T++SLL + PSSG +
Sbjct: 32 IELKNVSVRRNGKK---ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDV 88
Query: 1071 TLDGVEIQKLQVKW-LRQQMGVVS---QEPVLFSDTIRANIAE-MANANGF--------- 1116
TL G K + + LR+++G+VS E +T+R + + G
Sbjct: 89 TLLGRRFGKGETIFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAED 148
Query: 1117 ---ISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
L E G L LS G+++RV IARA+VK+P++L+LDE LD+ +
Sbjct: 149 LAAAQWLLELLGAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIARE 208
Query: 1172 VVQDALDQVMVDR---TTLVVAHRLSTI-KNAHLIAVVSQGMIVEKG 1214
+ + L+++ L V H I ++ +G +V +G
Sbjct: 209 QLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQG 255
|
Length = 257 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 92.5 bits (231), Expect = 2e-21
Identities = 52/197 (26%), Positives = 85/197 (43%), Gaps = 55/197 (27%)
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083
++ + L++ G+ AL+GE+G+GKST++ +L Y P SG I +DG
Sbjct: 11 GGVKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDG--------- 61
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGV----QLSGGQ 1139
+ V F+ A G+ QLS G+
Sbjct: 62 -----------KEVSFASPRDAR-----------------------RAGIAMVYQLSVGE 87
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDI-ESER---VVQDALDQVMVDRTTLVVAHRLST 1195
+Q V IARA+ + ++L+LDE T+AL E ER V++ Q + ++HRL
Sbjct: 88 RQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQ---GVAVIFISHRLDE 144
Query: 1196 IKN-AHLIAVVSQGMIV 1211
+ A + V+ G +V
Sbjct: 145 VFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 91.7 bits (229), Expect = 2e-21
Identities = 56/222 (25%), Positives = 97/222 (43%), Gaps = 67/222 (30%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+EL+ + + + L+G L + G + AL+G +G+GKST++ ++ Y P +GE+
Sbjct: 1 LELRGITKRFGG---VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
L+DG + V +S +A A
Sbjct: 58 LVDG--------------------KEVSFAS--------------------PRDARRA-- 75
Query: 505 FIKNLPQGLDTNVGEHGI----QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
GI QLS G++Q V IARA+ ++ R+L+LDE T+AL
Sbjct: 76 ----------------GIAMVYQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVE 119
Query: 561 MVQEALDRVMINRTTVI-VSHRLS-LIRNANIIAVIQQGKIV 600
+ + + R+ VI +SHRL + A+ + V++ G++V
Sbjct: 120 RLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVV 161
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.9 bits (236), Expect = 3e-21
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 30/188 (15%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKLQVK-- 1083
D+ + IP + A++G SG GKST + + R D G +T G + V
Sbjct: 57 DVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDPV 116
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANANGF-ISGLQEGYDTLVGE------------ 1130
LR+++G+V Q+P F +I N+A G I G D V E
Sbjct: 117 ALRRRIGMVFQKPNPFPKSIYDNVAY-----GLKIQGYDGDIDERVEESLRRAALWDEVK 171
Query: 1131 -----RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
G+ LSGGQ+QR+ IARAI +P+++L+DE SALD + ++D ++++ + T
Sbjct: 172 DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYT 231
Query: 1186 TLVVAHRL 1193
++V H +
Sbjct: 232 VVIVTHNM 239
|
Length = 285 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.5 bits (233), Expect = 3e-21
Identities = 75/241 (31%), Positives = 115/241 (47%), Gaps = 40/241 (16%)
Query: 385 IELKDVNFSY---PARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
++L D+ + Y P R F L + G A++G SG+GKST+++LI F P +
Sbjct: 2 LKLTDITWLYHHLPMR--------FDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPAS 53
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGK------THATKEEIQ 494
G + ++G + R + ++ QE L S ++ NI G A +E++
Sbjct: 54 GSLTLNGQDHTTTPPS--RRPVSMLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLH 111
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A A + LP QLSGGQ+QRVA+AR ++++ ILLLDE SAL
Sbjct: 112 AIARQMGIEDLLARLPG-----------QLSGGQRQRVALARCLVREQPILLLDEPFSAL 160
Query: 555 DSESGRMVQEALDRVMINR--TTVIVSHRLSLIRNANIIA----VIQQGKIVEKGTHSEL 608
D + + + +V R T ++VSH L +A IA V+ G+I G EL
Sbjct: 161 DPALRQEMLTLVSQVCQERQLTLLMVSHSLE---DAARIAPRSLVVADGRIAWDGPTDEL 217
Query: 609 L 609
L
Sbjct: 218 L 218
|
Length = 232 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.7 bits (235), Expect = 3e-21
Identities = 70/224 (31%), Positives = 109/224 (48%), Gaps = 28/224 (12%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL-------KEFQLKWIREK 462
I I +G SG GKSTV+ + R D G V+ K +R
Sbjct: 31 IRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDPVVVRRY 90
Query: 463 IGLVSQEPVLLSSSIRDNIAYG-KTHATK----EEIQAAAEAANASHFIKNLPQGLDTNV 517
IG+V Q+P S SI DN+A+G + + K + ++ A + A +K+ +
Sbjct: 91 IGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KL 143
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI 577
G+ LSGGQ+QR+ IARA+ +P +LLLDE SALD + R V+E + + + T +
Sbjct: 144 KVSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIAL 203
Query: 578 VSHRL-SLIRNANIIAVI--------QQGKIVEKGTHSELLENP 612
V+H + IR A+ A + G +VE G +++ +NP
Sbjct: 204 VTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIFQNP 247
|
Length = 261 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 95.5 bits (238), Expect = 3e-21
Identities = 54/207 (26%), Positives = 95/207 (45%), Gaps = 22/207 (10%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+ + G+ +G +G+GK+T I +L P+SG + G ++ + + + +R+ +
Sbjct: 10 DGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSI 68
Query: 1090 GVVSQEPVLFSD-TIRANIAEMANANGF--------------ISGLQEGYDTLVGERGVQ 1134
G+V Q + D T R N+ M G + L E D VG
Sbjct: 69 GIVPQYASVDEDLTGRENLEMMGRLYGLPKDEAEERAEELLELFELGEAADRPVG----T 124
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ-VMVDRTTLVVAHRL 1193
SGG ++R+ IA +++ +P +L LDE T+ LD + R + D + T L+ H +
Sbjct: 125 YSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYM 184
Query: 1194 STI-KNAHLIAVVSQGMIVEKGSHESL 1219
K IA++ G I+ +G+ E L
Sbjct: 185 EEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 96.2 bits (239), Expect = 4e-21
Identities = 67/237 (28%), Positives = 107/237 (45%), Gaps = 17/237 (7%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA- 441
G I + + +Y A +L+ L I G + AL+G SG GK+T++ I F
Sbjct: 4 GGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGL 60
Query: 442 -GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEA 499
G + I +L + + L+ Q L + DN+A+G + A
Sbjct: 61 TGRIAIADRDLT--HAPPHKRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERV 118
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE-S 558
A+A + GL QLSGG +QR+AIARA+ +P +LLLDE SALD+
Sbjct: 119 ADALKLV-----GLGDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIR 173
Query: 559 GRMVQE--ALDRVMINRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
M +E AL + T + V+H + + A+ +++ G++ G L + P
Sbjct: 174 ANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAP 230
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 5e-21
Identities = 61/189 (32%), Positives = 96/189 (50%), Gaps = 30/189 (15%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEIQKLQVK- 1083
+++ L IP + A +G SG GKST++ R D P G +T G + V
Sbjct: 27 KNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86
Query: 1084 -WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGER----------- 1131
+R+++G+V Q+P F +I NIA A NG+ + D LV ER
Sbjct: 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGY----KGDMDELV-ERSLRQAALWDEV 141
Query: 1132 -------GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
G+ LSGGQ+QR+ IARAI +P+++L+DE SALD S +++ + ++
Sbjct: 142 KDKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQY 201
Query: 1185 TTLVVAHRL 1193
T ++V H +
Sbjct: 202 TIIIVTHNM 210
|
Length = 264 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 92.3 bits (230), Expect = 6e-21
Identities = 65/207 (31%), Positives = 102/207 (49%), Gaps = 28/207 (13%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
DL L I G+ + L+G SG GK+T + ++ +P+SG I + G ++ L K +
Sbjct: 15 ALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DR 72
Query: 1088 QMGVVSQEPVLFSD-TIRANIAEMANANGF-----ISGLQE-----GYDTLVGERGVQLS 1136
+ +V Q L+ T+ NIA ++E + L+ + QLS
Sbjct: 73 DIAMVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIEHLLDRKPKQLS 132
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALD--------IESERVVQDALDQVMVDRTTLV 1188
GGQ+QRVA+ RAIV+EPK+ L+DE S LD E +R+ Q + TT+
Sbjct: 133 GGQRQRVALGRAIVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQR------LGTTTIY 186
Query: 1189 VAH-RLSTIKNAHLIAVVSQGMIVEKG 1214
V H ++ + A IAV++ G I + G
Sbjct: 187 VTHDQVEAMTMADRIAVMNDGQIQQIG 213
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 98.6 bits (246), Expect = 6e-21
Identities = 79/226 (34%), Positives = 117/226 (51%), Gaps = 18/226 (7%)
Query: 385 IELKDVNFSYPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
+ELKD+ SYP+ +EQ+ L G L I G + A+VG SGSGKST+++++ P +G
Sbjct: 5 LELKDIRRSYPS-GEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSG 63
Query: 443 EVLIDGVNLKEF------QLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQA 495
+ G ++ QL+ RE G + Q LLS + N+ +A E
Sbjct: 64 TYRVAGQDVATLDADALAQLR--REHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLER--- 118
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A ++ L GL+ V QLSGGQ+QRV+IARA++ +++L DE T ALD
Sbjct: 119 KQRLLRAQELLQRL--GLEDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALD 176
Query: 556 SESGRMVQEALDRVMINRTTVI-VSHRLSLIRNANIIAVIQQGKIV 600
S SG V L ++ TVI V+H + A + I+ G+IV
Sbjct: 177 SHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIV 222
|
Length = 648 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (231), Expect = 7e-21
Identities = 64/218 (29%), Positives = 113/218 (51%), Gaps = 27/218 (12%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QKL 1080
+++ + I + A++G SG GK+T++ + R D P G I G +I +L
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLV------------ 1128
V R+++G+V Q+P F +I N+A +G S + D +V
Sbjct: 78 DVTEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKS--KHKLDRIVEESLKKAALWDE 135
Query: 1129 -----GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
+ G +LSGGQ+QR+ IARA+ EP+++LLDE TSALD + + ++ L+++ +
Sbjct: 136 VKSELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSEN 195
Query: 1184 RTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLI 1220
T ++V H + I+ A IA + +G ++E G ++
Sbjct: 196 YTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIV 233
|
Length = 250 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 97.7 bits (244), Expect = 8e-21
Identities = 79/251 (31%), Positives = 115/251 (45%), Gaps = 48/251 (19%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKS-TVISLIQRFYDPQA----GEVLIDGVNL-- 451
+ + G I G ALVG SGSGKS T +S++ P A G +L DG +L
Sbjct: 22 TVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81
Query: 452 -KEFQLKWIR-EKIGLVSQEPVLLSS-----SIRDNIAYG-KTHATKEEIQAAAEA---- 499
E QL+ +R KIG++ QEP ++S +I +A + H A A A
Sbjct: 82 ASERQLRGVRGNKIGMIFQEP--MTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELL 139
Query: 500 -----ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+ P +LSGGQ+QRV IA A+ +P +L+ DE T+AL
Sbjct: 140 ELVGIPEPEKRLDAYPH-----------ELSGGQRQRVMIAMALANEPDLLIADEPTTAL 188
Query: 555 DSESGRMVQ-EALD-----RVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
D VQ + LD + + + ++H L ++R A+ + V+Q G+IVE GT
Sbjct: 189 DVT----VQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVETGTTET 244
Query: 608 LLENPYGAYNR 618
L P Y R
Sbjct: 245 LFAAPQHPYTR 255
|
Length = 534 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (232), Expect = 8e-21
Identities = 68/228 (29%), Positives = 105/228 (46%), Gaps = 22/228 (9%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF- 454
+ +LN L + +G AL+G SG GKST+ L+ P G V G L +
Sbjct: 21 KHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLN 80
Query: 455 --QLKWIREKIGLVSQEP---VLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
Q K R I +V Q+ V ++R+ I H + A A AS ++ +
Sbjct: 81 RAQRKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLL--SLDKAERLARASEMLRAV 138
Query: 510 PQGLDTNVGEH-GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ-EALD 567
LD +V + QLSGGQ QRV +ARA+ +P++L+LDEA S LD ++Q +
Sbjct: 139 --DLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNLD----LVLQAGVIR 192
Query: 568 -----RVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELL 609
+ + ++H L L+ R + V+ G+IVE + L
Sbjct: 193 LLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKL 240
|
Length = 268 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.2 bits (231), Expect = 8e-21
Identities = 64/212 (30%), Positives = 108/212 (50%), Gaps = 9/212 (4%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA---GEVLIDGVNL--KEFQLKWIREK 462
P ++ A++G SG GKSTV+ I R +D P A G++L+D ++ + IR +
Sbjct: 27 FPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVSIRRR 86
Query: 463 IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521
+G+V Q+P + SI DN+ G + A E +S L + + +
Sbjct: 87 VGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNA 146
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHR 581
++LSGGQ+QR+ IAR + P ++L+DE SALD S ++E ++ + T +IV+H
Sbjct: 147 MELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHN 206
Query: 582 L-SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
+ R ++ A G +VE G ++ P
Sbjct: 207 MQQAARVSDYTAFFYMGDLVECGETKKIFTTP 238
|
Length = 252 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.2 bits (237), Expect = 9e-21
Identities = 71/234 (30%), Positives = 120/234 (51%), Gaps = 18/234 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ LK++ + +++ L I GT+ L+G SG GK+TV+ L+ P G++
Sbjct: 7 VVLKNITKRFG---SNTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQI 63
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG--KTHATKEEIQAAAEAAN 501
IDG ++ ++ + I +V Q L S+ +N+ YG KEE + + A
Sbjct: 64 FIDGEDVTHRSIQ--QRDICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEAL 121
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ +L D V Q+SGGQ+QRVA+ARA+I P++LL DE S LD+ R
Sbjct: 122 E---LVDLAGFEDRYVD----QISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRS 174
Query: 562 VQEALDRVM--INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612
++E + + N T++ V+H S ++ + V+ +GKI++ G+ EL P
Sbjct: 175 MREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQP 228
|
Length = 351 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 61/198 (30%), Positives = 99/198 (50%), Gaps = 34/198 (17%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-----GHITLDGVEIQKLQVKW 1084
+ + + IP AL+G SG GKST + L R D G + LDG +I + V
Sbjct: 62 KGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121
Query: 1085 --LRQQMGVVSQEPVLFSDTIRANIAEMANANGFI-SGL---------QEGYDTLV---- 1128
LR+++G+V Q P F +IR NI+ +G I +GL ++ D LV
Sbjct: 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSL 181
Query: 1129 -------------GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
+ + LSGGQ+QR+ IAR + +P+++L+DE SALD + ++D
Sbjct: 182 RQAALWDEVNDRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIED 241
Query: 1176 ALDQVMVDRTTLVVAHRL 1193
++++ + T +VV H +
Sbjct: 242 LIEELAEEYTVVVVTHNM 259
|
Length = 305 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 99.1 bits (247), Expect = 1e-20
Identities = 73/252 (28%), Positives = 123/252 (48%), Gaps = 41/252 (16%)
Query: 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST 1054
+SE + +T M F + K + RD+ +++P GK ++G +GSGKST
Sbjct: 651 PTSERSAKT--PKMKTDDFFELEPK-------VLLRDVSVSVPRGKLTVVLGATGSGKST 701
Query: 1055 VI-SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI------ 1107
++ SLL +F EI + +V W + + V Q+ + + T+R NI
Sbjct: 702 LLQSLLSQF-------------EISEGRV-WAERSIAYVPQQAWIMNATVRGNILFFDEE 747
Query: 1108 --AEMANA------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159
A +A+A ++ L G +T +GE+GV LSGGQK RV++ARA+ + LLD
Sbjct: 748 DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSGGQKARVSLARAVYANRDVYLLD 807
Query: 1160 EATSALDIE-SERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHES 1218
+ SALD ERVV++ + +T ++ H++ + A + + G + GS
Sbjct: 808 DPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSSAD 867
Query: 1219 LISTKNGIYTSL 1230
+ T +Y +L
Sbjct: 868 FMRTS--LYATL 877
|
Length = 1560 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.9 bits (231), Expect = 1e-20
Identities = 70/232 (30%), Positives = 114/232 (49%), Gaps = 28/232 (12%)
Query: 1008 MGEVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
MG + VS+ Y E D+ LTI G A +G +GSGKST++ LL + P
Sbjct: 1 MG-INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVP 59
Query: 1066 SSGHITLDGVEI----QKLQVKWLRQQMGVVSQ--EPVLFSDTIRANIA----------- 1108
+ G + +D I + +K +R+++G+V Q E LF +T+ ++A
Sbjct: 60 TQGSVRVDDTLITSTSKNKDIKQIRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQE 119
Query: 1109 ---EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
+A + G+ E +L + +LSGGQ +RVAIA + EPKIL+LDE T+ L
Sbjct: 120 EAEALAREKLALVGISE---SLFEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGL 176
Query: 1166 DIESERVVQDALDQVMVDRTTLV-VAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
D + + + ++ T+V V H + + N A + V+ +G +V G
Sbjct: 177 DPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGK 228
|
Length = 280 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 1e-20
Identities = 64/214 (29%), Positives = 106/214 (49%), Gaps = 24/214 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ------KL 1080
+ D+ L P G+T+ L+G SG+GKS+++ +L P SG + + G
Sbjct: 16 QALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDK 75
Query: 1081 QVKWLRQQMGVVSQEPVLFSD-TIRANIAE-------------MANANGFISGLQEGYDT 1126
++ LR+ +G+V Q+ L+ T++ N+ E +A A + L+
Sbjct: 76 AIRDLRRNVGMVFQQYNLWPHLTVQENLIEAPCRVLGLSKDQALARAEKLLKRLR--LKP 133
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-SERVVQDALDQVMVDRT 1185
+ LSGGQ+QRVAIARA++ EP++LL DE T+ALD E + ++V + T
Sbjct: 134 YADRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGIT 193
Query: 1186 TLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHES 1218
++V H + K A + + G IVE+G
Sbjct: 194 QVIVTHEVEVARKTASRVVYMENGHIVEQGDASC 227
|
Length = 242 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 94.8 bits (236), Expect = 1e-20
Identities = 71/211 (33%), Positives = 111/211 (52%), Gaps = 24/211 (11%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084
+V D+ L IP G+ +AL+G SGSGK+T++ ++ +SGHI G ++ +L +
Sbjct: 14 RTQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHAR- 72
Query: 1085 LRQQMGVVSQEPVLF-----SDTI-----------RANIAEM-ANANGFISGLQEGYDTL 1127
+++G V Q LF D I R N A + A + +Q + L
Sbjct: 73 -DRKVGFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAH--L 129
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRT 1185
QLSGGQKQRVA+ARA+ EP+ILLLDE ALD + + ++ L Q+ + T
Sbjct: 130 ADRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFT 189
Query: 1186 TLVVAH-RLSTIKNAHLIAVVSQGMIVEKGS 1215
++ V H + ++ A + V+SQG I + G+
Sbjct: 190 SVFVTHDQEEAMEVADRVVVMSQGNIEQAGT 220
|
Length = 353 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 1e-20
Identities = 64/180 (35%), Positives = 93/180 (51%), Gaps = 26/180 (14%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+ + LTI G+ I+L+G SG GKST+++L+ P+SG + L+G +I + +M
Sbjct: 2 KGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG----PDRM 57
Query: 1090 GVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGV 1133
V +L T+R NIA + + + GL E D +R
Sbjct: 58 VVFQNYSLLPWLTVRENIALAVDRVLPDLSKSERRAIVEEHIALVGLTEAAD----KRPG 113
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAH 1191
QLSGG KQRVAIARA+ PK+LLLDE ALD + +Q+ L Q+ + T L+V H
Sbjct: 114 QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 1e-20
Identities = 66/222 (29%), Positives = 116/222 (52%), Gaps = 20/222 (9%)
Query: 394 YPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452
+ P E + LNG L I G ++G++G+GKST+++ I P +G++LIDGV++
Sbjct: 12 FKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVT 71
Query: 453 EFQLKWIR-EKIGLVSQEPVLLSS---SIRDNIAYGKTHATKEEIQAAAEAANASHF--- 505
+ R + V Q+P+ ++ +I +N+A ++ K + +A S F
Sbjct: 72 KKS-VAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRER 130
Query: 506 IKNLPQG----LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ L G L +G LSGGQ+Q +++ A + P+ILLLDE T+ALD ++
Sbjct: 131 LARLGLGLENRLSDRIG----LLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEF 186
Query: 562 VQEALDRVMINR--TTVIVSHRL-SLIRNANIIAVIQQGKIV 600
V E +++ TT++V+H + + N + ++ GKIV
Sbjct: 187 VMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.9 bits (234), Expect = 1e-20
Identities = 73/235 (31%), Positives = 114/235 (48%), Gaps = 54/235 (22%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI---QKLQVKWLRQQMGV 1091
T+ GKT+A+VGESG GKST+ LL P+ G + G ++ K LRQ++ +
Sbjct: 37 TLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQKLLRQKIQI 96
Query: 1092 VSQ-----------------EPVLFSDTI-----RANIAEMANANGFISGLQ-EGYDTLV 1128
V Q EP+L + ++ R M GL+ E YD
Sbjct: 97 VFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAK----VGLRPEHYD--- 149
Query: 1129 GERGVQL-SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD---- 1183
R + SGGQ+QR+AIARA++ +P +++ DE SALD+ VQ + +M+D
Sbjct: 150 --RYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS----VQAQVLNLMMDLQQE 203
Query: 1184 -RTTLV-VAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235
+ V ++H LS +++ A + V+ G VEKG+ K I+ + P+T
Sbjct: 204 LGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGT-------KEQIFNNPRHPYT 251
|
Length = 327 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 90.4 bits (225), Expect = 2e-20
Identities = 62/194 (31%), Positives = 95/194 (48%), Gaps = 18/194 (9%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI----QKLQVKWLRQQMGVVS 1093
+ + G SG+GKST++ + P G I L+G + +K+ + ++++G+V
Sbjct: 22 NEEVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQRKIGLVF 81
Query: 1094 QEPVLFSD-TIRANIA----EMANANGFISGLQE-----GYDTLVGERGVQLSGGQKQRV 1143
Q+ LF +R N+A N IS + E G D L+ QLSGG+KQRV
Sbjct: 82 QQYALFPHLNVRENLAFGLKRKRNREDRIS-VDELLDLLGLDHLLNRYPAQLSGGEKQRV 140
Query: 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD--RTTLVVAHRLSTI-KNAH 1200
A+ARA+ +P++LLLDE SALD + L Q+ + + V H LS A
Sbjct: 141 ALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLAD 200
Query: 1201 LIAVVSQGMIVEKG 1214
I V+ G + G
Sbjct: 201 RIVVMEDGRLQYIG 214
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 91.4 bits (228), Expect = 2e-20
Identities = 66/216 (30%), Positives = 102/216 (47%), Gaps = 25/216 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL- 1085
+ R + L +P G+ ++G +G GK+T++ L SG I LDG +I KL
Sbjct: 14 HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERA 73
Query: 1086 RQQMGVVSQEPVLFSD-TIRANI----AEMANANGFISGLQEGYD------TLVGERGVQ 1134
R + V Q +F T+ N+ A + + I E Y+ ++G RG
Sbjct: 74 RAGIAYVPQGREIFPRLTVEENLLTGLAALPRRSRKI--PDEIYELFPVLKEMLGRRGGD 131
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSAL------DIESERVVQDALDQVMVDRTTLV 1188
LSGGQ+Q++AIARA+V PK+LLLDE T + DI RV++ + L+
Sbjct: 132 LSGGQQQQLAIARALVTRPKLLLLDEPTEGIQPSIIKDI--GRVIRRLRAE--GGMAILL 187
Query: 1189 VAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223
V L + A V+ +G +V G+ + L K
Sbjct: 188 VEQYLDFARELADRYYVMERGRVVASGAGDELDEDK 223
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 92.6 bits (230), Expect = 2e-20
Identities = 63/227 (27%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
D L N P +L L I G + A+ G++GSGK++++ LI +P G
Sbjct: 36 DDNNLFFSNLCLVGAP---VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEG 92
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
++ G +I SQ ++ +I++NI +G ++ + ++ +A
Sbjct: 93 KIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQL 138
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
I P+ +T +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + + +
Sbjct: 139 EEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEI 198
Query: 563 QEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
E+ + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL
Sbjct: 199 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSEL 245
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 2e-20
Identities = 68/245 (27%), Positives = 124/245 (50%), Gaps = 33/245 (13%)
Query: 385 IELKDVNFSYPARPDEQ----ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
I+ K+V++ Y +E L+ L + G ++G +GSGKST+ + P
Sbjct: 5 IKCKNVSYKY-ESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPS 63
Query: 441 AGEVLIDGVNLKEFQLKW-IREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEEIQA 495
G+V +DG++ + + W IR K G+V Q P ++++ + +++A+G + EEI+
Sbjct: 64 EGKVYVDGLDTSDEENLWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRE 123
Query: 496 ----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
+ + + ++ P LSGGQKQRVAIA + P ++ DE T
Sbjct: 124 RVDESLKKVGMYEYRRHAPH-----------LLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 552 SALDSESGRMVQEALDRVM-INR----TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHS 606
+ LD SGR +E ++ + +N+ T ++++H + A+ I V+ GK+V +GT
Sbjct: 173 AMLDP-SGR--REVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPK 229
Query: 607 ELLEN 611
E+ +
Sbjct: 230 EIFKE 234
|
Length = 280 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-20
Identities = 67/216 (31%), Positives = 106/216 (49%), Gaps = 32/216 (14%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVIS-LLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092
L +P G +A+VG +G GK+++IS +L S + + G QV W+
Sbjct: 638 LDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRGTVAYVPQVSWI------- 690
Query: 1093 SQEPVLFSDTIRANI-------AEMANANGFISGLQEGYDTL-------VGERGVQLSGG 1138
F+ T+R NI E ++ LQ D L +GERGV +SGG
Sbjct: 691 ------FNATVRDNILFGSPFDPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGG 744
Query: 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA-LDQVMVDRTTLVVAHRLSTIK 1197
QKQRV++ARA+ + + D+ SALD R V D + + +T ++V ++L +
Sbjct: 745 QKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLS 804
Query: 1198 NAHLIAVVSQGMIVEKGSHESLISTKNG-IYTSLIE 1232
I +V +GMI E+G++E L NG ++ L+E
Sbjct: 805 QVDRIILVHEGMIKEEGTYEELS--NNGPLFQKLME 838
|
Length = 1622 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 93.1 bits (232), Expect = 3e-20
Identities = 76/245 (31%), Positives = 115/245 (46%), Gaps = 48/245 (19%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF---QLK 457
+ L+G + G A+VG SG GKST+ L+ P GE+ G +L + K
Sbjct: 29 KALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADPEAQK 88
Query: 458 WIREKIGLVSQEPVLLSSSIRDNIAYG------KTHATKEE-------IQAAAEAANASH 504
+R+KI +V Q P YG K EE + AA A
Sbjct: 89 LLRQKIQIVFQNP------------YGSLNPRKKVGQILEEPLLINTSLSAAERREKALA 136
Query: 505 FIKNLPQGLDTNVGEHGIQ----LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ + GL EH + SGGQ+QR+AIARA++ DP +++ DE SALD
Sbjct: 137 MMAKV--GLRP---EHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADEPVSALDVS--- 188
Query: 561 MVQ-EALDRVM-----INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613
VQ + L+ +M + + V +SH LS++ + A+ + V+ G+ VEKGT ++ NP
Sbjct: 189 -VQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQIFNNPR 247
Query: 614 GAYNR 618
Y +
Sbjct: 248 HPYTQ 252
|
Length = 327 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 91.8 bits (228), Expect = 3e-20
Identities = 66/224 (29%), Positives = 107/224 (47%), Gaps = 14/224 (6%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF- 454
A+ +L L I G L+G SG GKST+ L+ P G V G +L +
Sbjct: 20 AKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLD 79
Query: 455 --QLKWIREKIGLVSQE---PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
Q + R + LV Q+ V ++R I H T + + + A + + +
Sbjct: 80 RKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS--LDESEQKARIAELLDMV 137
Query: 510 PQGLDTNVGE-HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR 568
GL + + QLSGGQ QR+ IARA+ P++++LDEA S LD ++ E L +
Sbjct: 138 --GLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRK 195
Query: 569 VMINRTT--VIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELL 609
+ T + ++H L L+ +AV+ +G+IVE+ ++LL
Sbjct: 196 LQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLL 239
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 4e-20
Identities = 61/226 (26%), Positives = 102/226 (45%), Gaps = 38/226 (16%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
RVS+ R + + +T PPG L+G +GSGKST++ LL P +G + L G
Sbjct: 6 RVSWSAGGRL---IVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAG 62
Query: 1075 VEIQKLQVKWLRQQMGVVSQE-----PVLFSDTI------------------RANIAEMA 1111
V++ L + +++ +V Q+ P+ D + A +
Sbjct: 63 VDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRAL 122
Query: 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
TL SGG++QRV +ARA+ +EPK+LLLDE T+ LD+ ++
Sbjct: 123 ARTELSHLADRDMSTL--------SGGERQRVHVARALAQEPKLLLLDEPTNHLDVRAQL 174
Query: 1172 VVQDALDQVMVDRTTLVVA-HRLSTIKNA--HLIAVVSQGMIVEKG 1214
+ ++ T+V A H L+ + H++ V+ G +V G
Sbjct: 175 ETLALVRELAATGVTVVAALHDLNLAASYCDHVV-VLDGGRVVAAG 219
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 95.4 bits (238), Expect = 4e-20
Identities = 58/231 (25%), Positives = 103/231 (44%), Gaps = 30/231 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E ++V+ Y +L I G A+VG +G+GKST++ L+ P +G V
Sbjct: 322 LEFENVSKGYD--GGRLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQE--PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
+ G +K IG Q + ++ + ++ G ++E++A
Sbjct: 380 KV-GETVK----------IGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF-- 426
Query: 503 SHFIKNLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
G E + LSGG+K R+ +A+ +++ P +LLLDE T+ LD ES
Sbjct: 427 ---------GFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEA 477
Query: 562 VQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611
++EAL T ++VSH + A I +++ +G + + LE
Sbjct: 478 LEEALLD--FEGTVLLVSHDRYFLDRVATRIWLVEDKVEEFEGGYEDYLEQ 526
|
Length = 530 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 4e-20
Identities = 66/243 (27%), Positives = 119/243 (48%), Gaps = 34/243 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ ++++ Y R +++NG L + G I L+G +G+GK+T +I P +G++
Sbjct: 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 445 LIDGVNLKEFQL-KWIREKIGLVSQEPVLLSS-SIRDNI--AYGKTHATKEEIQAAAEAA 500
L+DG ++ + + K R IG + QE + ++ +NI +K+E + E
Sbjct: 58 LLDGQDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEEL 117
Query: 501 ----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD- 555
+ +H K+ LSGG+++RV IARA+ +P+ LLLDE + +D
Sbjct: 118 LEEFHITHLRKSK-----------ASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDP 166
Query: 556 ---SESGRMVQEALDR---VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609
+ ++++ DR V+I T V LS+ A I I +GK++ +GT E+
Sbjct: 167 IAVQDIQKIIKILKDRGIGVLI--TDHNVRETLSITDRAYI---IYEGKVLAEGTPEEIA 221
Query: 610 ENP 612
N
Sbjct: 222 ANE 224
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 96.9 bits (241), Expect = 4e-20
Identities = 78/305 (25%), Positives = 135/305 (44%), Gaps = 44/305 (14%)
Query: 922 FFFFFMAYAVTFY-VGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLAS-DASKAKS 979
F FFF+A VTF +G + + L+M + Q + +S D
Sbjct: 1119 FVFFFIA--VTFIAIGTNQDGEGEVG------IILTLAMNILSTLQWAVNSSIDVDGLMR 1170
Query: 980 SAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFL---RVSFKYPTRPHIEV-------- 1028
S + VF ID + +G + + V + +P+ ++V
Sbjct: 1171 SVSRVFKFIDLPQ--EEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYT 1228
Query: 1029 ------FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV 1082
+DL ++ G+ + L+G +GSGKST++S L R + G I +DGV + +
Sbjct: 1229 EAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL 1287
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRAN--------------IAEMANANGFISGLQEGYDTLV 1128
+ R+ GV+ Q+ +FS T R N +AE I + D ++
Sbjct: 1288 QTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVL 1347
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
+ G LS G KQ + +AR+I+ + KILLLDE ++ LD + ++++ L Q + T ++
Sbjct: 1348 VDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVIL 1407
Query: 1189 VAHRL 1193
HR+
Sbjct: 1408 SEHRV 1412
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 4e-20
Identities = 68/221 (30%), Positives = 107/221 (48%), Gaps = 28/221 (12%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN---LKEFQLK 457
Q L G + G +A L G SG+GKST++ LI P AG++ G + LK ++
Sbjct: 16 QALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVP 75
Query: 458 WIREKIGLVSQEP-VLLSSSIRDN------IAYGKTHATKEEIQAAAEAANASHFIKNLP 510
++R +IG++ Q+ +L+ ++ DN IA + + AA + KN P
Sbjct: 76 FLRRQIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFP 135
Query: 511 QGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD---SESGRMVQEALD 567
IQLSGG++QRV IARA++ P +LL DE T LD SE + E +
Sbjct: 136 -----------IQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFN 184
Query: 568 RVMINRTTVIVSHRLSLIRNANI-IAVIQQGKIVEKGTHSE 607
RV + T ++ +H + LI + + + G + G E
Sbjct: 185 RVGV--TVLMATHDIGLISRRSYRMLTLSDGHLHG-GVGGE 222
|
Length = 222 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 96.6 bits (240), Expect = 6e-20
Identities = 62/207 (29%), Positives = 109/207 (52%), Gaps = 11/207 (5%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
+ +IP G +A+VG+ G GKS+++S L D GH+ + G Q W++
Sbjct: 657 ITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGSVAYVPQQAWIQND--- 713
Query: 1092 VSQEPVLFSDTIRAN-IAEMANANGFISGLQ---EGYDTLVGERGVQLSGGQKQRVAIAR 1147
+E +LF + ++ A + L+ G T +GE+GV LSGGQKQRV++AR
Sbjct: 714 SLRENILFGKALNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLAR 773
Query: 1148 AIVKEPKILLLDEATSALDIESERVVQDAL---DQVMVDRTTLVVAHRLSTIKNAHLIAV 1204
A+ I L D+ SA+D + + + + + V+ ++T ++V H +S + +I V
Sbjct: 774 AVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIV 833
Query: 1205 VSQGMIVEKGSHESLISTKNGIYTSLI 1231
+S G I E GS++ L+ ++G + +
Sbjct: 834 MSGGKISEMGSYQELLQ-RDGAFAEFL 859
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 6e-20
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 23/216 (10%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QK 1079
+ D+ L I K AL+G SG GKST + L R D G + LDG I +
Sbjct: 18 QALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKD 77
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFI---------------SGLQEGY 1124
+ V LR+++G+V Q+P F +I N+A +G + L +
Sbjct: 78 VDVVELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV 137
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + ++LSGGQ+QR+ IAR I +P ++L+DE TSALD S ++D + ++ +
Sbjct: 138 KDDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEY 197
Query: 1185 TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
T ++V H + + A G ++E E +
Sbjct: 198 TIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233
|
Length = 251 |
| >gnl|CDD|240327 PTZ00243, PTZ00243, ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-20
Identities = 61/212 (28%), Positives = 108/212 (50%), Gaps = 2/212 (0%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461
+L G I +VG +GSGKST++ R + GE+ ++G + + L+ +R
Sbjct: 1325 VLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRR 1384
Query: 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521
+ ++ Q+PVL ++R N+ A+ E+ AA E + + +G+D+ V E G
Sbjct: 1385 QFSMIPQDPVLFDGTVRQNVD-PFLEASSAEVWAALELVGLRERVASESEGIDSRVLEGG 1443
Query: 522 IQLSGGQKQRVAIARAMIK-DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH 580
S GQ+Q + +ARA++K +L+DEAT+ +D R +Q + T + ++H
Sbjct: 1444 SNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAH 1503
Query: 581 RLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
RL + + I V+ G + E G+ EL+ N
Sbjct: 1504 RLHTVAQYDKIIVMDHGAVAEMGSPRELVMNR 1535
|
Length = 1560 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.8 bits (231), Expect = 6e-20
Identities = 69/218 (31%), Positives = 107/218 (49%), Gaps = 35/218 (16%)
Query: 1023 RPHIEVF---RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079
R F +D+ L++ G+ + L+G SG GK+T++ ++ ++G I G +I +
Sbjct: 11 RKRFGAFTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITR 70
Query: 1080 LQVKWLRQQMGVVSQEPVLFSD-TIRANIA-----EMANANGFISGLQEGYDTLVGERGV 1133
L + ++ G+V Q LF + T+ NIA + E D LVG G
Sbjct: 71 LPPQ--KRDYGIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLD-LVGLPGS 127
Query: 1134 ------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM------ 1181
QLSGGQ+QRVA+ARA+ P +LLLDE SALD V++ L +
Sbjct: 128 ERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSALDAR----VREHLRTEIRQLQRR 183
Query: 1182 VDRTTLVVAH----RLSTIKNAHLIAVVSQGMIVEKGS 1215
+ TT++V H LS A I V++ G+I + G+
Sbjct: 184 LGVTTIMVTHDQEEALSM---ADRIVVMNHGVIEQVGT 218
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 92.5 bits (230), Expect = 7e-20
Identities = 60/210 (28%), Positives = 101/210 (48%), Gaps = 16/210 (7%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI----QKLQVKWLR 1086
D T+P A+ G SGSGK+T+I L+ P G I L+G + + + + +
Sbjct: 15 DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEK 74
Query: 1087 QQMGVVSQEPVLFSD-TIRANIAE-MANANGFISGLQE-------GYDTLVGERGVQLSG 1137
+++G V QE LF ++R N+ M A + G L+G +LSG
Sbjct: 75 RRIGYVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELLGIGHLLGRLPGRLSG 134
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLST 1195
G+KQRVAI RA++ P++LL+DE +ALD + + L+++ L V+H L
Sbjct: 135 GEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQE 194
Query: 1196 IKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224
+ A + V+ G + G + ++ +
Sbjct: 195 VLRLADRVVVLEDGRVAAAGPIAEVWASPD 224
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 89.3 bits (222), Expect = 7e-20
Identities = 59/214 (27%), Positives = 110/214 (51%), Gaps = 13/214 (6%)
Query: 395 PARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF 454
+ Q ++G + G + L+G +G+GK+T + ++ +P AG +DG ++ +
Sbjct: 13 DVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKE 72
Query: 455 QLKWIREKIGLVSQEPVLLSS-SIRDNIAY-GKTHATK-EEIQAAAEAANASHFIKNLPQ 511
+ R ++G VS L + R+N+ Y + K +E+ A E ++ L
Sbjct: 73 PAE-ARRRLGFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRLGMEEL-- 129
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI 571
LD VG S G +Q+VAIARA++ DP +LLLDE T+ LD + R ++E + ++
Sbjct: 130 -LDRRVGG----FSTGMRQKVAIARALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRA 184
Query: 572 NRTTVIVS-HRLSLI-RNANIIAVIQQGKIVEKG 603
++ S H + + R + + V+ +G++V +G
Sbjct: 185 LGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.8 bits (225), Expect = 7e-20
Identities = 72/233 (30%), Positives = 109/233 (46%), Gaps = 27/233 (11%)
Query: 404 NGFCLL------IPNGTIAALVGTSGSGKSTVISLIQRFYD--PQA---GEVLIDGVNLK 452
GF L IP I A +G SG GKST++ R D P A G +L N+
Sbjct: 31 GGFLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIY 90
Query: 453 EFQLKWI--REKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNL 509
+ Q+ + R ++G+V Q P SI +NIA+ + + K + E + I
Sbjct: 91 DSQINSVKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWE- 149
Query: 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
+ + E G LSGGQ+QR+ IARA+ P +LL+DE SALD S R V+E +
Sbjct: 150 --EVKDKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLEL 207
Query: 570 MINRTTVIVSHRLSLI-RNANIIAVI---------QQGKIVEKGTHSELLENP 612
T ++V+H + R A+ A ++GK+VE ++ +P
Sbjct: 208 KEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVEFSPTEQMFGSP 260
|
Length = 274 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 96.1 bits (239), Expect = 7e-20
Identities = 118/542 (21%), Positives = 234/542 (43%), Gaps = 47/542 (8%)
Query: 144 LETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGG-FLIAFF 202
L ++L+ +A + + G ++ R + D +I D + + FIQ +G F+++
Sbjct: 965 LHSVLQAPMAVLNT-MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIFVVSVL 1023
Query: 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQ--KQAADSLAATVVAQTIGSIR---TV 257
+ + +++IP VI +M++ SQ KQ + + + I S++ T+
Sbjct: 1024 QPY----IFIAAIPVAVI--FIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTI 1077
Query: 258 ASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEK 317
+F + ++++K L + ++ L+T + IIF + + V + A I
Sbjct: 1078 RAFGRQSYFETLFHKAL-NLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIA--IGTN 1134
Query: 318 GYSGGDVMSVIFGVLIGSMSLGQ----ASPCLSAFAAGQAAAFKFFEAINRKPEI----- 368
G+V +I + + +S Q +S + + FKF + +P
Sbjct: 1135 QDGEGEV-GIILTLAMNILSTLQWAVNSSIDVDGLMRSVSRVFKFIDLPQEEPRPSGGGG 1193
Query: 369 -----DLCCVNGKKLDDI---RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVG 420
+ + G ++++ + Y +L + G L+G
Sbjct: 1194 KYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKY-TEAGRAVLQDLSFSVEGGQRVGLLG 1252
Query: 421 TSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480
+GSGKST++S + R + GE+ IDGV+ L+ R+ G++ Q+ + S + R N
Sbjct: 1253 RTGSGKSTLLSALLRLLSTE-GEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKN 1311
Query: 481 IAYGKTHA--TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538
+ + + EEI AE I+ P LD + + G LS G KQ + +AR++
Sbjct: 1312 L---DPYEQWSDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSI 1368
Query: 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598
+ +ILLLDE ++ LD + +++++ L + N T ++ HR+ + VI+
Sbjct: 1369 LSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALLECQQFLVIEGSS 1428
Query: 599 IVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETE 658
+ + + +LL N + + + + K N+S Q PKIT ++ E E
Sbjct: 1429 VKQYDSIQKLL-NETSLFKQAMSAADRLKLFPLHRRNSSKRKPQ----PKITALRE-EAE 1482
Query: 659 SD 660
+
Sbjct: 1483 EE 1484
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.4 bits (224), Expect = 8e-20
Identities = 78/227 (34%), Positives = 115/227 (50%), Gaps = 36/227 (15%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ-------- 1078
EV + + L G I+++G SGSGKST + + PS G I ++G I
Sbjct: 19 EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQ 78
Query: 1079 -----KLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEG--------Y 1124
K Q++ LR ++ +V Q L+S T+ N+ E A + GL + Y
Sbjct: 79 LKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVME---APIQVLGLSKQEARERAVKY 135
Query: 1125 DTLVG--ERG-----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
VG ER V LSGGQ+QRV+IARA+ EP++LL DE TSALD E V +
Sbjct: 136 LAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIM 195
Query: 1178 DQVMVD-RTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLIS 1221
Q+ + +T +VV H + ++ +H+I + QG I E+G+ E L
Sbjct: 196 QQLAEEGKTMVVVTHEMGFARHVSSHVI-FLHQGKIEEEGAPEQLFG 241
|
Length = 257 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 89.5 bits (223), Expect = 9e-20
Identities = 57/217 (26%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-K 1083
I+ R + L + G+ +AL+G +G+GK+T++ + P SG I DG +I L +
Sbjct: 15 KIQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHE 74
Query: 1084 WLRQQMGVVSQEPVLFSD-TIRANIAEMA-----NANGFISGLQEGYD------TLVGER 1131
R + V + +F T+ N+ + + L+E Y+ +R
Sbjct: 75 RARLGIAYVPEGRRIFPRLTVEENL-LLGAYARRDKEAQERDLEEVYELFPRLKERRNQR 133
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL------DIESERVVQDALDQVMVDRT 1185
LSGG++Q +AIARA++ PK+LLLDE + L +I +++ + + T
Sbjct: 134 AGTLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEEI--FEAIKELRKEGGM--T 189
Query: 1186 TLVVAHRL-STIKNAHLIAVVSQGMIVEKGSHESLIS 1221
L+V ++ A V+ G IV G+ L++
Sbjct: 190 ILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLA 226
|
Length = 237 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.2 bits (224), Expect = 1e-19
Identities = 59/222 (26%), Positives = 105/222 (47%), Gaps = 24/222 (10%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+ F+Y + L L+IP G AL+G +G+GKST++ L Y P G + + G
Sbjct: 10 LHFRYKDGTK--ALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGR 67
Query: 1076 EIQKLQVKWLRQQMGVVSQEP--VLFSDTI--------------RANIAEMANANGFISG 1119
E+ KW+R ++G+V Q+P +FS T+ + +
Sbjct: 68 EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVR 127
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
+ + D + LS GQK+RVAIA + +P +++LDE + LD + + + LD+
Sbjct: 128 MWDFRD----KPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQETLMEILDR 183
Query: 1180 VMVDRTTLVVA-HRLS-TIKNAHLIAVVSQGMIVEKGSHESL 1219
+ T++VA H + + A + V+ +G ++ +G L
Sbjct: 184 LHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225
|
Length = 274 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-19
Identities = 68/230 (29%), Positives = 108/230 (46%), Gaps = 22/230 (9%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP---SS 1067
V+F VSF YP D+ +IP G AL+G +GSGKST+ L+ P +
Sbjct: 6 VEFKHVSFTYPDSKK-PALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPN 64
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA-----------EMAN-A 1113
IT+DG+ + V +R+++G+V Q P T+ ++A EM
Sbjct: 65 SKITVDGITLTAKTVWDIREKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIV 124
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
++ G + LSGGQKQRVAIA + EPKI++LDE+TS LD + +
Sbjct: 125 RDVLA--DVGMLDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSMLDPAGKEQI 182
Query: 1174 QDALDQVMVDR--TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221
+ ++ T + + H + A + V+ G ++ +GS + S
Sbjct: 183 LKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232
|
Length = 282 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.9 bits (223), Expect = 1e-19
Identities = 70/230 (30%), Positives = 110/230 (47%), Gaps = 42/230 (18%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ------ 1081
V L ++ G+ +AL+G SGSGKST++ +L G I ++G ++ +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 1082 -------VKWLRQQMGVVSQEPVLFSD-TIRANIAE-------MANANGF--------IS 1118
++ +R ++G+V Q LF T+ N+ E MA A +
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV 134
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
GL + D + QLSGGQ+QRVAIARA+ PK++L DE TSALD E +V + L+
Sbjct: 135 GLADKADHM----PAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPE---LVGEVLN 187
Query: 1179 QVM-----VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222
+ D T L+V H + + A + +G IVE+G + +
Sbjct: 188 VIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIFRQ 237
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.7 bits (221), Expect = 1e-19
Identities = 63/236 (26%), Positives = 111/236 (47%), Gaps = 19/236 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E+++++ Y Q L G L + G I AL+G +G+GK+T++ I P++G +
Sbjct: 4 LEVENLSAGYGKI---QALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRI 60
Query: 445 LIDGVNLKEFQL-KWIREKIGLVSQEPVLLSS-SIRDNIAYG-KTHATKEEIQAAAEAAN 501
+ DG ++ + R I V + + ++ +N+ G KE + E
Sbjct: 61 IFDGEDITGLPPHERARLGIAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQERDLEEVY 120
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD----SE 557
F L + + G LSGG++Q +AIARA++ P++LLLDE + L E
Sbjct: 121 -ELF-PRLKERRNQRAG----TLSGGEQQMLAIARALMSRPKLLLLDEPSEGLAPKIVEE 174
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
++E + T ++V A+ V++ G+IV GT +ELL +P
Sbjct: 175 IFEAIKELRKEGGM--TILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLADP 228
|
Length = 237 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.0 bits (223), Expect = 1e-19
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQE 469
IP+G A++G +G GKST++ + R P G V +DG +++ + K + +IGL++Q
Sbjct: 30 IPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRIGLLAQN 89
Query: 470 PVLLSS-SIRDNIAYGK-------THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521
++++ +A G+ T KE+ +A +A A+ Q +DT
Sbjct: 90 ATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDT------ 143
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR----TTVI 577
LSGGQ+QR IA + ++ I+LLDE T+ LD + E L +NR T
Sbjct: 144 --LSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSE--LNREKGYTLAA 199
Query: 578 VSHRLS-LIRNANIIAVIQQGKIVEKGT-----HSELLENPYG 614
V H L+ R A+ + +++GKIV +G +EL+E YG
Sbjct: 200 VLHDLNQACRYASHLIALREGKIVAQGAPKEIVTAELIERIYG 242
|
Length = 265 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 89.1 bits (221), Expect = 2e-19
Identities = 65/232 (28%), Positives = 111/232 (47%), Gaps = 21/232 (9%)
Query: 1003 TLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062
+L V R + + V ++ L+I G+T+ L+G SG GKST+ LL
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGL 60
Query: 1063 YDPSSGHITLDGVEIQKL---QVKWLRQQMGVVSQE---PVLFSDTIRANIAE-MANANG 1115
P+ G ++ G ++ +L Q + R+ + +V Q+ V T+R I E + +
Sbjct: 61 EKPAQGTVSFRGQDLYQLDRKQRRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS 120
Query: 1116 FISGLQEGY-----------DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA 1164
Q+ + QLSGGQ QR+ IARA+ +PK+++LDEA S
Sbjct: 121 LDESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKPKLIVLDEAVSN 180
Query: 1165 LDIESERVVQDALDQVMVDRTT--LVVAHRLSTIKN-AHLIAVVSQGMIVEK 1213
LD+ + V+ + L ++ T L + H L +++ +AV+ +G IVE+
Sbjct: 181 LDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEE 232
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 2e-19
Identities = 59/189 (31%), Positives = 89/189 (47%), Gaps = 37/189 (19%)
Query: 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
Q + Y +P D+ LT+ G+ + ++G SG GK+T+++L+ F G IT
Sbjct: 3 QISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 1072 LDGVEIQKLQVKWLRQQMGVVSQ-EPVLFSDTIRANIA------------------EMAN 1112
LDG V+ + GVV Q E +L ++ N+A +M
Sbjct: 60 LDGK-----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLK 114
Query: 1113 ANGFISGLQEGYDTLVGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
G EG +R + QLSGGQ+QRV IARA+ P++LLLDE ALD +
Sbjct: 115 KVGL-----EGA----EKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
Query: 1172 VVQDALDQV 1180
+Q L ++
Sbjct: 166 QMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (221), Expect = 2e-19
Identities = 63/226 (27%), Positives = 118/226 (52%), Gaps = 13/226 (5%)
Query: 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF 454
+ +L+ + P + +L+G +GSGK+T + + R D +G+VL+ G ++ +
Sbjct: 34 KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNY 93
Query: 455 Q-LKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTH--ATKEEIQAAAEAANASHFIKNLP 510
+ + R ++G++ Q P SI DN+ G + H ++E + A+A L
Sbjct: 94 RDVLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTE---VGLW 150
Query: 511 QGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570
+ + + +LSGGQ+Q + +AR + +P +LLLDE TSALD + ++E + +
Sbjct: 151 DAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLA 210
Query: 571 INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPYGA 615
T +IV+H L+ R ++ A+ G++VE+G +L +P A
Sbjct: 211 DRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSPKHA 256
|
Length = 276 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 3e-19
Identities = 69/239 (28%), Positives = 110/239 (46%), Gaps = 21/239 (8%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
++FKY D+ + G+ ++++G +GSGKST + L+ + SG I +DG
Sbjct: 10 LTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGD 69
Query: 1076 EIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANG-----FISGLQEGYDTLV 1128
+ + V +R ++G+V Q P T+ ++A G + E + LV
Sbjct: 70 LLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALE-LV 128
Query: 1129 G------ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----RVVQDALD 1178
G +LSGGQKQRVAIA A+ PKI++LDEATS LD E + ++ D
Sbjct: 129 GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRD 188
Query: 1179 QVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYT-SLIEPHTT 1236
T + + H L + + + V+ G + + L S N + L P TT
Sbjct: 189 D--YQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSRGNDLLQLGLDIPFTT 245
|
Length = 279 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 3e-19
Identities = 64/187 (34%), Positives = 97/187 (51%), Gaps = 25/187 (13%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PSS---GHITLDGVEI--QKLQVK 1083
D+ L I P A +G SG GKSTV+ L R ++ P + G + LDG ++ +
Sbjct: 22 DVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPV 81
Query: 1084 WLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFIS----------GLQ------EGYDT 1126
+R+ +G+V Q P F + +IR N+ NG + L+ E D
Sbjct: 82 AVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDR 141
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
L + G LSGGQ+QR+ IARAI EP +LL+DE SALD S ++D ++++ D T
Sbjct: 142 L-DKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTI 200
Query: 1187 LVVAHRL 1193
++V H +
Sbjct: 201 VIVTHNM 207
|
Length = 258 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 94.2 bits (234), Expect = 3e-19
Identities = 66/227 (29%), Positives = 116/227 (51%), Gaps = 18/227 (7%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
GD L NFS P +L + G + A+ G++GSGKS+++ +I +P G
Sbjct: 425 GDDGLFFSNFSLYVTP---VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEG 481
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
++ G +I Q ++ +I+DNI +G ++ + + +A
Sbjct: 482 KIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLSY-DEYRYTSVIKACQL 527
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
I P+ T +GE GI LSGGQ+ R+++ARA+ KD + LLD + LD + + +
Sbjct: 528 EEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEI 587
Query: 563 QEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
E+ L ++M N+T ++V+ +L ++ A+ I ++ +G GT SEL
Sbjct: 588 FESCLCKLMSNKTRILVTSKLEHLKKADKILLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.7 bits (226), Expect = 3e-19
Identities = 63/207 (30%), Positives = 97/207 (46%), Gaps = 29/207 (14%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE------VLID---GVNLKEFQLKWIR 460
+P I A+ G SG+GK+++I+ I PQ G VL D G+ L +
Sbjct: 21 LPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK----- 75
Query: 461 EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGE 519
+IG V Q+ L +R N+ YG + + + P
Sbjct: 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDRYP--------- 126
Query: 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVI 577
LSGG+KQRVAI RA++ P +LL+DE ++LD R + L+R+ IN +
Sbjct: 127 --GSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILY 184
Query: 578 VSHRL-SLIRNANIIAVIQQGKIVEKG 603
VSH L ++R A+ + V++QGK+ G
Sbjct: 185 VSHSLDEILRLADRVVVLEQGKVKAFG 211
|
Length = 352 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 86.8 bits (216), Expect = 3e-19
Identities = 57/198 (28%), Positives = 98/198 (49%), Gaps = 28/198 (14%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKW 1084
E+ + + LTI G+ AL+G +GSGKST+ + Y+ + G I G +I L +
Sbjct: 14 EILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE- 72
Query: 1085 LRQQMGV--VSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
R ++G+ Q P I + NA+ F+ + EG SGG+K+R
Sbjct: 73 ERARLGIFLAFQYPP--------EIPGVKNAD-FLRYVNEG-----------FSGGEKKR 112
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAH--RLSTIKNA 1199
I + ++ EP + +LDE S LDI++ R+V + ++++ ++ L++ H RL
Sbjct: 113 NEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKP 172
Query: 1200 HLIAVVSQGMIVEKGSHE 1217
+ V+ G IV+ G E
Sbjct: 173 DRVHVLYDGRIVKSGDKE 190
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 88.0 bits (219), Expect = 3e-19
Identities = 67/214 (31%), Positives = 106/214 (49%), Gaps = 30/214 (14%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKW 1084
E+ + + LT+ G+ A++G +GSGKST+ + Y+ + G I DG +I +L
Sbjct: 18 EILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDE 77
Query: 1085 LRQQMG--VVSQEP-----VLFSDTIRANIAEMANANG----FISGLQE-----GYDTLV 1128
R + G + Q P V SD +RA + A G FI L+E G D
Sbjct: 78 -RARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEF 136
Query: 1129 GERGVQ--LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRT 1185
ER V SGG+K+R I + ++ EPK+ +LDE S LDI++ ++V + ++ + R
Sbjct: 137 LERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRG 196
Query: 1186 TLVVAHR---LSTIKN--AHLIAVVSQGMIVEKG 1214
L++ H L IK H++ G IV+ G
Sbjct: 197 VLIITHYQRLLDYIKPDKVHVLY---DGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 93.0 bits (231), Expect = 3e-19
Identities = 67/212 (31%), Positives = 106/212 (50%), Gaps = 21/212 (9%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---QVKWLRQQMGVVSQ 1094
PG+T++LVGESGSGKST L R + G I +G I L +++ LR+ + + Q
Sbjct: 349 PGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQ 408
Query: 1095 EPVLFSD---TIRANIAEMANANGFISG--LQEGYDTLVGERGVQ----------LSGGQ 1139
+P D T+ +I E +G + G L+ G+ SGGQ
Sbjct: 409 DPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQ 468
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIE-SERVVQDALD-QVMVDRTTLVVAHRLSTIK 1197
+QR+ IARA+ PK+++ DEA SALD+ +++ LD Q L ++H ++ ++
Sbjct: 469 RQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVE 528
Query: 1198 N-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+H +AV+ G IVE G ++ YT
Sbjct: 529 RISHRVAVMYLGQIVEIGPRRAVFENPQHPYT 560
|
Length = 623 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 4e-19
Identities = 57/189 (30%), Positives = 95/189 (50%), Gaps = 20/189 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+++ + Y +P L L + +G + ++G SG GK+T+++LI F Q G +
Sbjct: 2 LQISHLYADYGGKP---ALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHA--TKEEIQAAAEAAN 501
+DG ++ + G+V Q LL +++DN+A+G A K + A
Sbjct: 59 TLDGK-----PVEGPGAERGVVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQML 113
Query: 502 ASHFIKNLPQGLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
GL+ + I QLSGGQ+QRV IARA+ +P++LLLDE ALD+ +
Sbjct: 114 KK-------VGLE-GAEKRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDAFTRE 165
Query: 561 MVQEALDRV 569
+Q L ++
Sbjct: 166 QMQTLLLKL 174
|
Length = 255 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.9 bits (219), Expect = 4e-19
Identities = 68/240 (28%), Positives = 102/240 (42%), Gaps = 47/240 (19%)
Query: 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS 1066
M E + L V + D+ LT+ PG+ +A++G +G+GKST++ L P
Sbjct: 1 AMLEARNLSVR-----LGGRTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPD 55
Query: 1067 SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL-FSDTIR-----------------ANIA 1108
SG + L+G + L ++ V+ Q L F T+ +
Sbjct: 56 SGEVRLNGRPLADWSPAELARRRAVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALV 115
Query: 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV------KEPKILLLDEAT 1162
A A Q L G QLSGG++QRV +AR + P+ LLLDE T
Sbjct: 116 AAALA-------QVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWLLLDEPT 168
Query: 1163 SALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-----AHLIAVVSQGMIVEKGS 1215
SALD+ + V Q+ +R +VV H L N A I ++ QG +V G+
Sbjct: 169 SALDLAHQHHVLRLARQLAHERGLAVIVVLHDL----NLAARYADRIVLLHQGRLVADGT 224
|
Length = 258 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.2 bits (219), Expect = 5e-19
Identities = 62/253 (24%), Positives = 114/253 (45%), Gaps = 36/253 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +++++S R ++L+G L + G + A++G +G+GKST++ + P +GEV
Sbjct: 2 IRAENLSYSLAGR---RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEV 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVL-LSSSIRDNIAYG--------KTHATKEEIQA 495
++GV L + + + ++ Q L ++++ + G + +
Sbjct: 59 TLNGVPLNSWPPEELARHRAVLPQNSSLAFPFTVQEVVQMGRIPHRSGREPEEDERIAAQ 118
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM------IKDPRILLLDE 549
A A + S + LSGG++QRV +AR + + R L LDE
Sbjct: 119 ALAATDLSGLAGRDYR-----------TLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDE 167
Query: 550 ATSALD-SESGRMVQEALDRVMINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGT--- 604
TSALD + ++ A + V H L+L + A+ I ++ QG+++ G+
Sbjct: 168 PTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQD 227
Query: 605 --HSELLENPYGA 615
E LE YGA
Sbjct: 228 VLTDETLERVYGA 240
|
Length = 259 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 90.1 bits (223), Expect = 8e-19
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 18/216 (8%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR--- 1086
+D L I G+ ++G SGSGKST++ LL R +P+ G + +DGV+I K+ LR
Sbjct: 45 KDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVR 104
Query: 1087 --------QQMGVVSQEPVLFSDTIRANIAEMANANGFISGL----QEGYDTLVGERGVQ 1134
Q ++ VL + +A + L Q G + +
Sbjct: 105 RKKIAMVFQSFALMPHMTVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHSYPDE 164
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHR 1192
LSGG +QRV +ARA+ P ILL+DEA SALD +QD L ++ RT + ++H
Sbjct: 165 LSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHD 224
Query: 1193 L-STIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
L ++ IA++ G +V+ G+ + +++ Y
Sbjct: 225 LDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260
|
Length = 400 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 89.4 bits (222), Expect = 8e-19
Identities = 63/218 (28%), Positives = 106/218 (48%), Gaps = 40/218 (18%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +L LTI G + L+G SG GK+TV+ L+ P+ G I +DG ++ ++ ++
Sbjct: 21 VIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QR 78
Query: 1088 QMGVVSQEPVLF-------------------SDTIRANIAE---MANANGFISGLQEGYD 1125
+ +V Q LF + + + E + + GF
Sbjct: 79 DICMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGF--------- 129
Query: 1126 TLVGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMV 1182
+R V Q+SGGQ+QRVA+ARA++ +PK+LL DE S LD R +++ + Q
Sbjct: 130 ---EDRYVDQISGGQQQRVALARALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQF 186
Query: 1183 DRTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESL 1219
+ T+L V H S + + V+++G I++ GS + L
Sbjct: 187 NITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQEL 224
|
Length = 351 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 87.4 bits (217), Expect = 8e-19
Identities = 62/229 (27%), Positives = 109/229 (47%), Gaps = 26/229 (11%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + +F T L L I G + ++G +G+GKST+++ + P+S
Sbjct: 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTS 60
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPV--LFSD-TIRANIAEMANANGF-------- 1116
G I +DGV++ K V + V Q+P+ + TI N+A +A + G
Sbjct: 61 GQILIDGVDVTKKSVAKRANLLARVFQDPLAGTAPELTIEENLA-LAESRGKKRGLSSAL 119
Query: 1117 -----------ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
++ L G + + +R LSGGQ+Q +++ A + PKILLLDE T+AL
Sbjct: 120 NERRRSSFRERLARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAAL 179
Query: 1166 DIESERVVQDALDQVMVDR--TTLVVAHRL-STIKNAHLIAVVSQGMIV 1211
D ++ V + +++ + TTL+V H + + + + ++ G IV
Sbjct: 180 DPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIV 228
|
Length = 263 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 86.1 bits (214), Expect = 8e-19
Identities = 59/206 (28%), Positives = 98/206 (47%), Gaps = 25/206 (12%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084
V D+ L + G+ +G +G+GK+T + ++ P SG IT DG QK
Sbjct: 12 KKRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKNIEAL 71
Query: 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMANANGF----------ISGLQEGYDTLVGERGV 1133
+++G + + P + + T R N+ +A G + GL++ V
Sbjct: 72 --RRIGALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAKKKVK---- 125
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALD----IESERVVQDALDQVMVDRTTLVV 1189
S G KQR+ IA A++ P +L+LDE T+ LD E ++ DQ T L+
Sbjct: 126 GFSLGMKQRLGIALALLGNPDLLILDEPTNGLDPDGIKELRELILSLRDQ---GITVLIS 182
Query: 1190 AHRLSTI-KNAHLIAVVSQGMIVEKG 1214
+H LS I K A I ++++G ++E+G
Sbjct: 183 SHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.8 bits (215), Expect = 8e-19
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 17/193 (8%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---- 1080
+V ++ +I G+ +A+VG SGSGKST++ LL P+SG + +G + KL
Sbjct: 21 QTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAA 80
Query: 1081 QVKWLRQQMGVVSQEPVLFSD-TIRANIA----------EMANANGFISGLQEGYDTLVG 1129
+ + Q++G + Q L D T N+A N+ G +
Sbjct: 81 KAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAVGLEHRAN 140
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT--L 1187
R +LSGG++QRVAIARA+V P+++L DE T LD + + L ++ + T L
Sbjct: 141 HRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFL 200
Query: 1188 VVAHRLSTIKNAH 1200
VV H L K
Sbjct: 201 VVTHDLQLAKRMS 213
|
Length = 233 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.1 bits (227), Expect = 9e-19
Identities = 64/230 (27%), Positives = 108/230 (46%), Gaps = 46/230 (20%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
DV+ S + G I AL+G +G+GKST++ ++ Y P +GE+ +
Sbjct: 20 NDDVSLS----------------VKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRV 63
Query: 447 DGVNLKEFQLK----WIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAAN 501
DG KE ++K IR IG+V Q +L+ + ++ +NI G + I A
Sbjct: 64 DG---KEVRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARAR 120
Query: 502 ASHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSE- 557
+ LP D V + LS G++QRV I +A+ + R+L+LDE T+ L E
Sbjct: 121 IKELSERYGLPVDPDAKVAD----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEA 176
Query: 558 ------SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600
R+ E T + ++H+L + A+ + V+++GK+V
Sbjct: 177 DELFEILRRLAAEGK-------TIIFITHKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.1 bits (216), Expect = 1e-18
Identities = 61/230 (26%), Positives = 109/230 (47%), Gaps = 15/230 (6%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ F VSF+Y + +D+ IP G+ ++VG +GSGKST+ L+ SG I
Sbjct: 8 IVFKNVSFQYQSDASF-TLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEI 66
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA-EMANANGFISGLQEGYDTL 1127
+ I + LR+ +G+V Q P ++ ++A + N +
Sbjct: 67 FYNNQAITDDNFEKLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEA 126
Query: 1128 VGERGV---------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
+ + + LSGGQKQRVAIA + P +++LDEATS LD ++ + + D +
Sbjct: 127 LKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPDARQNLLDLVR 186
Query: 1179 QVMVDR--TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGI 1226
+V + T + + H LS A + V+++G + ++G+ + +
Sbjct: 187 KVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDHAEEL 236
|
Length = 269 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.2 bits (213), Expect = 1e-18
Identities = 71/227 (31%), Positives = 108/227 (47%), Gaps = 52/227 (22%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQKLQVK--WLR 1086
L + G AL+G SG GK+T + + R +D + +G I LDG +I +V +R
Sbjct: 25 LDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPVAMR 84
Query: 1087 QQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQ----EGYDTL--VGERGVQ------ 1134
+++G+V Q+P F M+ + ++GL+ D L V ER ++
Sbjct: 85 RRVGMVFQKPNPFP--------TMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWD 136
Query: 1135 ------------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
LSGGQ+QR+ IARA+ EP+ILL+DE TSALD S ++D + +
Sbjct: 137 EVKDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKK 196
Query: 1183 DRTTLVVAHRLSTIKNAHLIAVVSQ-------GMIVEKGSHESLIST 1222
T ++V H N H A VS G +VE G + L +
Sbjct: 197 VTTIIIVTH------NMHQAARVSDTTSFFLVGDLVEHGPTDQLFTN 237
|
Length = 252 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 1e-18
Identities = 55/195 (28%), Positives = 98/195 (50%), Gaps = 30/195 (15%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGVEIQKLQVKW 1084
++ +++ PG+ A++G SG+GKST+++ L +R SG + ++G + K +
Sbjct: 23 QLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDK---RS 79
Query: 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
R+ +G V Q+ +L T+R + F + L+ LSGG+++RV
Sbjct: 80 FRKIIGYVPQDDILHPTLTVRETLM-------FAAKLR------------GLSGGERKRV 120
Query: 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD--RTTLVVAHRLST--IKNA 1199
+IA +V P +L LDE TS LD S V L + + D RT + H+ S+ +
Sbjct: 121 SIALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRR-LADTGRTIICSIHQPSSEIFELF 179
Query: 1200 HLIAVVSQGMIVEKG 1214
+ ++SQG ++ G
Sbjct: 180 DKLLLLSQGRVIYFG 194
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-18
Identities = 65/192 (33%), Positives = 107/192 (55%), Gaps = 20/192 (10%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---QVKWLRQQMGVVSQ 1094
PG+ L G SG+GKST++ L+ PS+G I G +I +L +V +LR+Q+G++ Q
Sbjct: 27 PGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRRQIGMIFQ 86
Query: 1095 EPVLFSD-TIRANIAE---MANANG-----FISGLQEGYDTLVGERG--VQLSGGQKQRV 1143
+ L D T+ N+A +A A+G +S + L + +QLSGG++QRV
Sbjct: 87 DHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDKAKNFPIQLSGGEQQRV 146
Query: 1144 AIARAIVKEPKILLLDEATSALDIE-SERVVQ--DALDQVMVDRTTLVVAHRLSTI-KNA 1199
IARA+V +P +LL DE T LD SE +++ + ++V V T L+ H + I + +
Sbjct: 147 GIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGV--TVLMATHDIGLISRRS 204
Query: 1200 HLIAVVSQGMIV 1211
+ + +S G +
Sbjct: 205 YRMLTLSDGHLH 216
|
Length = 222 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (216), Expect = 1e-18
Identities = 65/248 (26%), Positives = 112/248 (45%), Gaps = 44/248 (17%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E ++++ R +L+ L + G + A++G +G+GKST++ + P +GEV
Sbjct: 3 LEARNLSVRLGGR---TLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEV 59
Query: 445 LIDGVNLKEF---QLKWIREKIGLVSQEPVL-LSSSIRDNIAYG------KTHATKEEIQ 494
++G L ++ +L R ++ Q L ++ + +A G +
Sbjct: 60 RLNGRPLADWSPAELARRR---AVLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVA 116
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI------KDPRILLLD 548
AA + +H QLSGG++QRV +AR + PR LLLD
Sbjct: 117 AALAQVDLAHLAGRDYP-----------QLSGGEQQRVQLARVLAQLWEPDGPPRWLLLD 165
Query: 549 EATSALDSESGRMVQEALDRVMINRTT------VIVSHRLSL-IRNANIIAVIQQGKIVE 601
E TSALD Q + R+ ++V H L+L R A+ I ++ QG++V
Sbjct: 166 EPTSALDLAH----QHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVA 221
Query: 602 KGTHSELL 609
GT +E+L
Sbjct: 222 DGTPAEVL 229
|
Length = 258 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.5 bits (215), Expect = 1e-18
Identities = 63/229 (27%), Positives = 113/229 (49%), Gaps = 33/229 (14%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWI 459
+++N L + +G I L+G +G+GK+T +I P +G++L+D ++ + + K
Sbjct: 18 KVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRA 77
Query: 460 REKIGLVSQEPVLLSS-SIRDNIAY--------GKTHATKEEIQAAAEAANASHFIKNLP 510
R IG + QE + ++ DNI K KEE+ A E + +H +++
Sbjct: 78 RLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFHITH-LRDSK 136
Query: 511 QGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD----SESGRMVQEAL 566
LSGG+++RV IARA+ +P+ +LLDE + +D + R+++
Sbjct: 137 ----------AYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIKHLK 186
Query: 567 DR---VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
DR V+I T V L + A II+ GK++ +G+ E++ N
Sbjct: 187 DRGIGVLI--TDHNVRETLDICDRAYIIS---DGKVLAEGSPEEIVNNE 230
|
Length = 243 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 86.4 bits (214), Expect = 1e-18
Identities = 67/233 (28%), Positives = 107/233 (45%), Gaps = 33/233 (14%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQV--- 1082
RD+ + PG+ + +VGESGSGKST++ L P G T G E++ Q+
Sbjct: 19 CRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEA 78
Query: 1083 ---KWLRQQMGVVSQEPVLFSDTIR------ANIAEMANANG---FISGLQEGYDTL--- 1127
+ +R + G V Q P D +R ANI E A G + + D L
Sbjct: 79 ERRRLMRTEWGFVHQNP---RDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEV 135
Query: 1128 ------VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
+ + SGG +QR+ IAR +V P+++ +DE T LD+ + + D L ++
Sbjct: 136 EIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLV 195
Query: 1182 VDR--TTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
D ++V H L + A + V+ QG +VE G + ++ YT L+
Sbjct: 196 RDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQLL 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 56/188 (29%), Positives = 94/188 (50%), Gaps = 26/188 (13%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PSS---GHITLDGVEIQ--KLQVK 1083
D+ ++IP + AL+G SG GKST++ R D P G I +G I V
Sbjct: 24 DITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADVV 83
Query: 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLV--------------- 1128
LR+++G+V Q P F +I N+A +G + ++ DT+V
Sbjct: 84 ALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKN--KKTLDTIVEKSLKGAALWDEVKD 141
Query: 1129 --GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
+ + LSGGQ+QR+ IAR + P+++L+DE SALD + ++D ++ + + T
Sbjct: 142 RLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTV 201
Query: 1187 LVVAHRLS 1194
++V H +
Sbjct: 202 IIVTHNMQ 209
|
Length = 253 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 62/189 (32%), Positives = 91/189 (48%), Gaps = 22/189 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QK 1079
+ + L P + AL+G SGSGKST++ + R D P +G I +G I +
Sbjct: 19 KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPR 78
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF--ISGLQEGYDT-LVG------- 1129
LR+++G+V Q+P F +I N+ G L E + L G
Sbjct: 79 TDTVDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV 138
Query: 1130 -----ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + LSGGQ+QRV IAR + PKI+LLDE TSALD S +++ L + D
Sbjct: 139 KDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDY 198
Query: 1185 TTLVVAHRL 1193
T L+V +
Sbjct: 199 TMLLVTRSM 207
|
Length = 252 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 2e-18
Identities = 66/237 (27%), Positives = 120/237 (50%), Gaps = 28/237 (11%)
Query: 1010 EVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
++ F +V +Y + E D+ ++IP G +A++G +GSGKST++ L P+S
Sbjct: 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTS 61
Query: 1068 GHITLDGVEIQ----KLQVKWLRQQMGVVSQ--EPVLFSDTIRANIA------------- 1108
G +T+ I ++K LR+++G+V Q E LF +T+ +I
Sbjct: 62 GTVTIGERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDA 121
Query: 1109 -EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+ A + GL E L+ +LSGGQ +RVAIA + EP++L+LDE T+ LD
Sbjct: 122 KQKAREMIELVGLPE---ELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDP 178
Query: 1168 ESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
+ + + + ++ ++ TT++V H + A I V+ +G + +G+ + +
Sbjct: 179 KGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFA 235
|
Length = 290 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 59/219 (26%), Positives = 101/219 (46%), Gaps = 25/219 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
+ + L + PG+ +A++G +G+GKST++ L P SG +TL+GV + + L
Sbjct: 15 RLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPPEELA 74
Query: 1087 QQMGVVSQEPVL-FSDTIRANIAEMANANGFISGLQEGYDTLVGERGV------------ 1133
+ V+ Q L F T++ + +M SG + D + + +
Sbjct: 75 RHRAVLPQNSSLAFPFTVQE-VVQMG-RIPHRSGREPEEDERIAAQALAATDLSGLAGRD 132
Query: 1134 --QLSGGQKQRVAIAR------AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR- 1184
LSGG++QRV +AR V + L LDE TSALDI + Q+ +
Sbjct: 133 YRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGG 192
Query: 1185 TTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
L V H L+ + A I ++ QG ++ GS + +++
Sbjct: 193 AVLAVLHDLNLAAQYADRIVLLHQGRVIASGSPQDVLTD 231
|
Length = 259 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 85.4 bits (212), Expect = 2e-18
Identities = 58/219 (26%), Positives = 108/219 (49%), Gaps = 19/219 (8%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI---QRFYDPQAGEVLIDGVNLK 452
+ILN L + +G + A++G+SGSGK+T++ I +G++L +G K
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK 75
Query: 453 EFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG---KTHATKEEIQAAAEAANASHFIKN 508
Q + + + V Q+ +LL ++R+ + Y + + +
Sbjct: 76 PDQFQ---KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVL----- 127
Query: 509 LPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
L T +G + ++ +SGG+++RV+IA ++ DP++L+LDE TS LDS + + L
Sbjct: 128 LRDLALTRIGGNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLS 187
Query: 568 RVMINRTTVIVS-H--RLSLIRNANIIAVIQQGKIVEKG 603
++ VI++ H R L R + I ++ G+IV G
Sbjct: 188 QLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-18
Identities = 78/234 (33%), Positives = 113/234 (48%), Gaps = 27/234 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF+ P R + L LT P GK L+G +GSGKST++ +L R PS G I LD
Sbjct: 17 VSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQ 73
Query: 1076 EIQKLQVKWLRQQMGVVSQE-PVLFSDTIRANIA----EMANANG-FISGLQEGYD---T 1126
++ K +++ + Q+ P T+R +A A G F + +E + +
Sbjct: 74 PLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAIS 133
Query: 1127 LVG-----ERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
LVG R V LSGG++QR IA + ++ + LLLDE TSALDI + +V AL
Sbjct: 134 LVGLKPLAHRLVDSLSGGERQRAWIAMLVAQDSRCLLLDEPTSALDI-AHQVDVLALVHR 192
Query: 1181 MVDRTTLVVAHRLSTIKNA-----HLIAVVSQGMIVEKGSHESLI--STKNGIY 1227
+ L V L I A +L+A+ MI + G+ L+ T IY
Sbjct: 193 LSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQ-GTPAELMRGETLEQIY 245
|
Length = 265 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 3e-18
Identities = 65/235 (27%), Positives = 108/235 (45%), Gaps = 37/235 (15%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV------ 1082
RD+ + PG+ + +VGESGSGK+T++ + P +G +T + Q +
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEA 81
Query: 1083 ---KWLRQQMGVVSQEPVLFSDTIR------ANIAE--MANAN---GFISGLQEGYDTL- 1127
+ LR + G V Q P D +R NI E MA G I E D L
Sbjct: 82 ERRRLLRTEWGFVHQNP---RDGLRMQVSAGGNIGERLMAIGARHYGNIR--AEAQDWLE 136
Query: 1128 --------VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
+ + SGG +QR+ IAR +V P+++ +DE T LD+ + + D L
Sbjct: 137 EVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRG 196
Query: 1180 VMVDR--TTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
++ + ++V H L+ + A + V+ QG +VE G + ++ + YT L+
Sbjct: 197 LVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.3 bits (213), Expect = 3e-18
Identities = 66/237 (27%), Positives = 127/237 (53%), Gaps = 16/237 (6%)
Query: 385 IELKDVNFSY-PARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I+ + VN++Y P P + L L + G+ AL+G +GSGKST++ + P G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 443 EVLIDGVNL----KEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTHATKEEIQAA 496
+V + + + K+ ++K +R+K+G+V Q P L ++ ++A+G + + +A
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAE 121
Query: 497 AEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
AA + GL E +LSGGQ +RVAIA + +P +L+LDE T+ LD
Sbjct: 122 KIAAEKLEMV-----GLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLD 176
Query: 556 SESGRMVQEALDRV-MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
++ + + + + +T V+V+H + + + A+ + ++++G I+ GT S++ +
Sbjct: 177 PKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQ 233
|
Length = 288 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 4e-18
Identities = 70/228 (30%), Positives = 115/228 (50%), Gaps = 28/228 (12%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS- 1066
E++ L+VSF +EV + L IP AL+G SGSGKST++ + R + P
Sbjct: 5 EIRDLKVSFG-----QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEA 59
Query: 1067 --SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEG 1123
SG + LDG +I K+ V LR+++ +V Q P + +I N+A N + +E
Sbjct: 60 RVSGEVYLDGQDIFKMDVIELRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKEL 119
Query: 1124 YDTL----------------VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+ + + +LSGGQ+QR+ IARA+ +P++LL DE T+ LD
Sbjct: 120 QERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDP 179
Query: 1168 ESERVVQDALDQVMVDRTTLVVAH-RLSTIKNAHLIAVVSQGMIVEKG 1214
E+ ++ ++ D T ++V H + + +A + +G IVE G
Sbjct: 180 ENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227
|
Length = 250 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.4 bits (211), Expect = 4e-18
Identities = 64/206 (31%), Positives = 99/206 (48%), Gaps = 35/206 (16%)
Query: 1022 TRPHIEV------------FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD----- 1064
+P I+V +++ + IP AL+G SG GKST I L R D
Sbjct: 9 AQPQIKVENLNLWYGEKQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNC 68
Query: 1065 PSSGHITLDGVEI--QKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF----IS 1118
G ++++G +I + V LR+ +G+V Q+P F +I N+A +G +
Sbjct: 69 RIEGKVSIEGEDIYEPDVDVVELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLD 128
Query: 1119 GL-----------QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
G+ E D L + LSGGQ+QR+ IAR + +PKI+L DE TSALD
Sbjct: 129 GVVENALRSAALWDETSDRL-KSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDP 187
Query: 1168 ESERVVQDALDQVMVDRTTLVVAHRL 1193
S ++D + + D T ++V H +
Sbjct: 188 ISTARIEDLIMNLKKDYTIVIVTHNM 213
|
Length = 258 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 4e-18
Identities = 59/213 (27%), Positives = 104/213 (48%), Gaps = 21/213 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ DL L++P GK AL+G +G GKST++ R P SG + L I L + L +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLAR 76
Query: 1088 QMGVVSQEPVLFSD-TIRANIA----EMANANGFISG----------LQEGYDTLVGERG 1132
++ ++ Q + T+R +A + G +S Q + L R
Sbjct: 77 RLALLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRL 136
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD--RTTLVVA 1190
LSGGQ+QR +A + ++ ++LLDE T+ LDI + +V L + + +T + V
Sbjct: 137 TDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLDI-NHQVELMRLMRELNTQGKTVVTVL 195
Query: 1191 HRLSTIKN--AHLIAVVSQGMIVEKGSHESLIS 1221
H L+ HL+ V++ G ++ +G+ E +++
Sbjct: 196 HDLNQASRYCDHLV-VLANGHVMAQGTPEEVMT 227
|
Length = 255 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.5 bits (211), Expect = 4e-18
Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 20/184 (10%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKLQVK- 1083
RD + I + +G SG GKSTV+ L R D GH+ G ++ V
Sbjct: 25 RDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84
Query: 1084 -WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEG----------YDTL---VG 1129
+R+ +G+V Q+P FS +I N+A N + L + +D + +
Sbjct: 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLK 144
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV 1189
G+ LSGGQ+QR+ IARAI EP++LLLDE SALD + R V++ + ++ D T +V
Sbjct: 145 VSGLSLSGGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALV 204
Query: 1190 AHRL 1193
H +
Sbjct: 205 THNM 208
|
Length = 261 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 83.7 bits (208), Expect = 4e-18
Identities = 57/218 (26%), Positives = 99/218 (45%), Gaps = 41/218 (18%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEVLIDGVNLKEFQL 456
++IL G L I G + AL+G +GSGKST+ I Y+ GE+L G ++ +
Sbjct: 12 GKEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPP 71
Query: 457 KWI-REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT 515
+ R I L Q P EI + F++ +
Sbjct: 72 EERARLGIFLAFQYPP--------------------EI----PGVKNADFLRYV------ 101
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRT 574
N G SGG+K+R I + ++ +P + +LDE S LD ++ R+V E ++++ ++
Sbjct: 102 NEG-----FSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKS 156
Query: 575 TVIVSHRLSLIR--NANIIAVIQQGKIVEKGTHSELLE 610
+I++H L+ + + V+ G+IV+ G LE
Sbjct: 157 VLIITHYQRLLDYIKPDRVHVLYDGRIVKSGDKELALE 194
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.9 bits (211), Expect = 4e-18
Identities = 51/163 (31%), Positives = 82/163 (50%), Gaps = 19/163 (11%)
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078
Y R V D+ L + G+ + L+G +G+GK+T ++ P SG I LD +I
Sbjct: 13 SYKKRK---VVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDIT 69
Query: 1079 KLQVKWLRQQMGV--VSQEPVLFSD-TIRANIA---EMANANGFISGLQEGYDTLVGE-- 1130
KL + R ++G+ + QE +F T+ NI E+ + + +E D L+ E
Sbjct: 70 KLPM-HKRARLGIGYLPQEASIFRKLTVEDNIMAVLEIREKDLKKAERKEELDALLEEFH 128
Query: 1131 -------RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
+ LSGG+++RV IARA+ PK +LLDE + +D
Sbjct: 129 ITHLRDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVD 171
|
Length = 243 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 73/247 (29%), Positives = 121/247 (48%), Gaps = 33/247 (13%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
L++V+F P R +L+ L P G + L+G +GSGKST++ ++ R P GE+L+
Sbjct: 14 LRNVSFRVPGR---TLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 447 DGVNLKEFQLK-WIREKIGLVSQEPVLLSSSIRDNIAYGK----------THATKEEIQA 495
D L+ + K + R+ L Q P ++R+ +A G+ A +E+++
Sbjct: 71 DAQPLESWSSKAFARKVAYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEE 130
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A L +D+ LSGG++QR IA + +D R LLLDE TSALD
Sbjct: 131 AISLVGLKPLAHRL---VDS--------LSGGERQRAWIAMLVAQDSRCLLLDEPTSALD 179
Query: 556 SESGRMVQEALDRVMINR--TTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTHSEL---- 608
V + R+ R T + V H +++ R + + ++ G+++ +GT +EL
Sbjct: 180 IAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMRGE 239
Query: 609 -LENPYG 614
LE YG
Sbjct: 240 TLEQIYG 246
|
Length = 265 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 71/253 (28%), Positives = 129/253 (50%), Gaps = 33/253 (13%)
Query: 1010 EVQFLRVSFKYPT----RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
EV+ L +F+Y T R +E + L T+ G+T+A++GE+GSGKST+ +L +P
Sbjct: 6 EVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA----NGFISGLQ 1121
+SG + +D + + Q++ ++ Q+P S R I+++ + N + Q
Sbjct: 66 TSGELLIDDHPLHFGDYSYRSQRIRMIFQDPST-SLNPRQRISQILDFPLRLNTDLEPEQ 124
Query: 1122 EG---YDTL--VGERGVQ-------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+TL VG L+ GQKQR+ +ARA++ PK+++ DEA ++LD+
Sbjct: 125 REKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLARALILRPKVIIADEALASLDMS- 183
Query: 1170 ERVVQDALDQVMVDR------TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS-HESLIS 1221
++ L +M++ + + V L +K+ + + V+ QG +VE+GS + L S
Sbjct: 184 ---MRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLAS 240
Query: 1222 TKNGIYTSLIEPH 1234
+ + LI H
Sbjct: 241 PLHELTKRLIAGH 253
|
Length = 267 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 85.6 bits (212), Expect = 4e-18
Identities = 71/253 (28%), Positives = 132/253 (52%), Gaps = 33/253 (13%)
Query: 1010 EVQFLRVSFKYPT----RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
EV+ L +F+Y T R +E + + T+ G+T+A++GE+GSGKST+ +L +P
Sbjct: 6 EVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEP 65
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA----NGFISG-- 1119
+SG I ++ + + +++ ++ Q+P S R I ++ + N +
Sbjct: 66 TSGEILINDHPLHFGDYSFRSKRIRMIFQDPNT-SLNPRLRIGQILDFPLRLNTDLEPEQ 124
Query: 1120 -LQEGYDTL--VG-------ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
++ ++TL VG L+ GQKQRVA+ARA++ PKI++ DEA ++LD+
Sbjct: 125 RRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRPKIIIADEALASLDMS- 183
Query: 1170 ERVVQDALDQVMVDR------TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS-HESLIS 1221
++ L +M++ + + V + IK+ + + V+ +G +VE+GS + L S
Sbjct: 184 ---MRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGSTADVLAS 240
Query: 1222 TKNGIYTSLIEPH 1234
+ + LIE H
Sbjct: 241 PLHELTKRLIESH 253
|
Length = 267 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 87.4 bits (216), Expect = 5e-18
Identities = 60/209 (28%), Positives = 99/209 (47%), Gaps = 19/209 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS--SGHITLDGVEIQKLQVKWL 1085
V DL L I G+ +AL+G+SG GK+T++ + F + +G I + ++
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPPH-- 77
Query: 1086 RQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGL--QEGYDTL----VGERG----VQ 1134
++ + ++ Q LF + N+A A + D L +G+ Q
Sbjct: 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAHLPAQ 137
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD---ALDQVMVDRTTLVVAH 1191
LSGG +QR+AIARAI EP +LLLDE SALD +++ AL + + + T L V H
Sbjct: 138 LSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTH 197
Query: 1192 -RLSTIKNAHLIAVVSQGMIVEKGSHESL 1219
+ + A ++ G + G ++L
Sbjct: 198 DQDDALTLADKAGIMKDGRLAAHGEPQAL 226
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 5e-18
Identities = 57/193 (29%), Positives = 88/193 (45%), Gaps = 27/193 (13%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL-------IDGVNLKE 453
+L L + G AL G SG+GKST++ + Y P +G +L +D
Sbjct: 22 PVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQASP 81
Query: 454 FQLKWIREK-IGLVSQ-EPVLLSSSIRDNIAYG--KTHATKEEIQAAAEAANASHFIKNL 509
++ +R K IG VSQ V+ S + +A + +E +A A + N+
Sbjct: 82 REVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARAREL-LARL--NI 138
Query: 510 PQGL-----DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
P+ L T SGG++QRV IAR I D ILLLDE T++LD+ + ++V E
Sbjct: 139 PERLWHLPPAT--------FSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVE 190
Query: 565 ALDRVMINRTTVI 577
+ +I
Sbjct: 191 LIAEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 5e-18
Identities = 56/219 (25%), Positives = 100/219 (45%), Gaps = 18/219 (8%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076
F + IE +D+ IP G+ + +G +G+GKST + +L P+SG + ++G +
Sbjct: 28 HFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKD 87
Query: 1077 IQKLQVKWLRQ---QMGVVSQ----EPVLFSDTIRANIAEM------ANANGFISGLQEG 1123
+ + ++LR MG Q P L S + I E+ + L
Sbjct: 88 PFRRREEYLRSIGLVMGQKLQLWWDLPALDSLEVLKLIYEIPDDEFAERLDFLTEIL--D 145
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183
+ + +LS GQ+ R +A A++ PK+L LDE T LD+ ++ +++ L + +
Sbjct: 146 LEGFLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEE 205
Query: 1184 R--TTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESL 1219
R T L+ H I + ++ QG +V G+ L
Sbjct: 206 RQATVLLTTHIFDDIATLCDRVLLIDQGQLVFDGTLAQL 244
|
Length = 325 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.2 bits (211), Expect = 6e-18
Identities = 66/217 (30%), Positives = 105/217 (48%), Gaps = 15/217 (6%)
Query: 1020 YPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079
Y E ++ P IA++G +G+GKST+ P+SG + + G I K
Sbjct: 11 YSYSGSKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITK 70
Query: 1080 LQVKWLRQQMGVVSQEP--VLFSDTIRANIA---------EMANANGFISGLQE-GYDTL 1127
++ +R+ +G+V Q P +FS T+ +IA E A+ S L G + L
Sbjct: 71 ENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEEL 130
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL 1187
LSGG+K+RVAIA I EP++L+LDE T+ LD + + + D L+ +
Sbjct: 131 RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMT 190
Query: 1188 VV--AHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
V+ H+L + A I V+ +G IV G+ E +
Sbjct: 191 VIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFL 227
|
Length = 277 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.0 bits (210), Expect = 6e-18
Identities = 63/213 (29%), Positives = 107/213 (50%), Gaps = 20/213 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +L + IP G A++G +G GKST++ L R P+ GH+ LDG IQ K + +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVAR 81
Query: 1088 QMGVVSQEPVLFSD-TIRANIA-------------EMANANGFISGLQ-EGYDTLVGERG 1132
++G+++Q D T++ +A + +Q G L +
Sbjct: 82 RIGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSV 141
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVA 1190
LSGGQ+QR IA + +E I+LLDE T+ LDI + + + L ++ ++ T V
Sbjct: 142 DTLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVL 201
Query: 1191 HRLSTI--KNAHLIAVVSQGMIVEKGSHESLIS 1221
H L+ +HLIA + +G IV +G+ + +++
Sbjct: 202 HDLNQACRYASHLIA-LREGKIVAQGAPKEIVT 233
|
Length = 265 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 84.6 bits (210), Expect = 6e-18
Identities = 61/237 (25%), Positives = 109/237 (45%), Gaps = 33/237 (13%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEV 444
L+ + ++IL G L + G + A++G +GSGKST+ I Y+ GE+
Sbjct: 4 LEIKDLHVEVEGKKEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEI 63
Query: 445 LIDGVNLKEFQLKWIREK----IGLVSQEPV---------LLSSSIRDNIAY-GKTHATK 490
L DG ++ E E+ I L Q PV L +++ G
Sbjct: 64 LFDGEDILELS---PDERARAGIFLAFQYPVEIPGVTNSDFLRAAMNARRGARGILPEFI 120
Query: 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
+E++ AE + L+ V E SGG+K+R I + ++ +P++ +LDE
Sbjct: 121 KELKEKAELLGLD------EEFLERYVNE---GFSGGEKKRNEILQLLLLEPKLAILDEP 171
Query: 551 TSALDSESGRMVQEALDRVM-INRTTVIVSHR---LSLIRNANIIAVIQQGKIVEKG 603
S LD ++ ++V E ++ + R +I++H L I+ + + V+ G+IV+ G
Sbjct: 172 DSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIK-PDKVHVLYDGRIVKSG 227
|
Length = 251 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 6e-18
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 36/191 (18%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-------TLDGVEIQ 1078
+ V +++ LT+ G+ +AL G SG+GKST++ L Y P SG I +D +
Sbjct: 21 LPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80
Query: 1079 KLQVKWLRQQ-MGVVSQ---------------EPVLFSDTIRANIAEMANANGFISGLQE 1122
+V +R++ +G VSQ EP+L R A ++ L
Sbjct: 81 PREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLERGVPREAARARARE--LLARLN- 137
Query: 1123 GYDTLVGERGVQL-----SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
+ ER L SGG++QRV IAR + + ILLLDE T++LD + +VV + +
Sbjct: 138 -----IPERLWHLPPATFSGGEQQRVNIARGFIADYPILLLDEPTASLDAANRQVVVELI 192
Query: 1178 DQVMVDRTTLV 1188
+ L+
Sbjct: 193 AEAKARGAALI 203
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 88.8 bits (220), Expect = 7e-18
Identities = 72/224 (32%), Positives = 110/224 (49%), Gaps = 30/224 (13%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV---NLKEFQLKWIREKIGLVSQE 469
G +LVG SGSGKST + R + Q GE++ +G L +L+ +R I + Q+
Sbjct: 350 GETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDTLSPGKLQALRRDIQFIFQD 409
Query: 470 PVLLSSSIRDNIAYG-----KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI-- 522
P S R + + H AAA A + LP EH
Sbjct: 410 P-YASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLP--------EHAWRY 460
Query: 523 --QLSGGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQEALDRVMINRTTVI-- 577
+ SGGQ+QR+ IARA+ +P++++ DEA SALD S G+++ LD + R I
Sbjct: 461 PHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLD---LQRDFGIAY 517
Query: 578 --VSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
+SH ++++ R ++ +AV+ G+IVE G + ENP Y R
Sbjct: 518 LFISHDMAVVERISHRVAVMYLGQIVEIGPRRAVFENPQHPYTR 561
|
Length = 623 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.6 bits (207), Expect = 8e-18
Identities = 56/212 (26%), Positives = 104/212 (49%), Gaps = 25/212 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
E R + + G+ L+G +G+GK+T I +L P+SG T+ G ++ + + + +R
Sbjct: 14 EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVR-EPREVR 72
Query: 1087 QQMGVVSQEPVLFSD-TIRANIAEMANANGFIS--------------GLQEGYDTLVGER 1131
+++G+V Q+ + + T N+ A G GL E D LV
Sbjct: 73 RRIGIVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAADRLVK-- 130
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR---TTLV 1188
SGG ++R+ IAR++V P++L LDE T LD ++ V + +++ + + T L+
Sbjct: 131 --TYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK-LKEEFGMTILL 187
Query: 1189 VAHRLSTI-KNAHLIAVVSQGMIVEKGSHESL 1219
H + + +A++ G I+ +G+ E L
Sbjct: 188 TTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 9e-18
Identities = 68/257 (26%), Positives = 119/257 (46%), Gaps = 30/257 (11%)
Query: 381 IRGDIELKDVNFS--YPARPDEQI--LNGFCLLIPNGTIAALVGTSGSGKSTVIS----- 431
+ DI L+ N + + + ++ LN I ++G SGSGKST+++
Sbjct: 16 LSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGL 75
Query: 432 LIQRFYDPQAGEVLIDGVNLKEFQL-----------KWIREKIGLVSQEP--VLLSSSIR 478
+ ++ Q G++ I + K +R ++ +V Q P L +I
Sbjct: 76 IKSKYGTIQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIE 135
Query: 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARA 537
+I +G ++ +A A + K GLD + E LSGGQK+RVAIA
Sbjct: 136 KDIMFGPVALGVKKSEAKKLAK--FYLNK---MGLDDSYLERSPFGLSGGQKRRVAIAGI 190
Query: 538 MIKDPRILLLDEATSALDSESGR-MVQEALDRVMINRTTVIVSHRL-SLIRNANIIAVIQ 595
+ P IL+ DE T+ LD + M+Q LD N+T +++H + ++ A+ + V+
Sbjct: 191 LAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMD 250
Query: 596 QGKIVEKGTHSELLENP 612
+GKI++ GT E+ +
Sbjct: 251 KGKILKTGTPYEIFTDQ 267
|
Length = 320 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 87.5 bits (217), Expect = 1e-17
Identities = 74/253 (29%), Positives = 120/253 (47%), Gaps = 40/253 (15%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS-TVISLLQRFYDPS-- 1066
++ L V+F+ V D+ L I G+T+ALVGESGSGKS T +S+L+ P
Sbjct: 7 AIENLSVAFRQQQTVR-TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVV 65
Query: 1067 --SGHITLDGVEIQKLQVKWLRQ----QMGVVSQEPVLFSD---TIRANIAEM------- 1110
SG I G + + LR ++ ++ QEP++ + T+ + E+
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM 125
Query: 1111 ---ANANGFISGLQEGYDTLVGERGV---------QLSGGQKQRVAIARAIVKEPKILLL 1158
A ++ L VG R QLSGG++QRV IA A++ P++L+
Sbjct: 126 RREAARGEILNCLDR-----VGIRQAAKRLTDYPHQLSGGERQRVMIAMALLTRPELLIA 180
Query: 1159 DEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
DE T+ALD+ + + L ++ ++ L + H LS ++ A +AV+ G VE+
Sbjct: 181 DEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNR 240
Query: 1216 HESLISTKNGIYT 1228
+L S YT
Sbjct: 241 AATLFSAPTHPYT 253
|
Length = 529 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.5 bits (206), Expect = 1e-17
Identities = 61/190 (32%), Positives = 92/190 (48%), Gaps = 22/190 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QK 1079
E + + L + AL+G SG GKST + L R D P +G+++L G I
Sbjct: 19 EALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPN 78
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISG--LQEGYDTLVG-------- 1129
V LR+Q+G+V Q+P F +I N+ G L E +T +
Sbjct: 79 EDVVQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEV 138
Query: 1130 -----ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
E + LSGGQ+QRV IAR + +P ++LLDE TSALD S +++ L ++
Sbjct: 139 KDHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQY 198
Query: 1185 TTLVVAHRLS 1194
T ++V H +
Sbjct: 199 TIILVTHSMH 208
|
Length = 252 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (207), Expect = 1e-17
Identities = 64/218 (29%), Positives = 112/218 (51%), Gaps = 26/218 (11%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QKLQV 1082
+D+ + P A++G SG GKSTV+ + R +D PS +G I LD +I + +
Sbjct: 21 KDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDP 80
Query: 1083 KWLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFI----------SGLQ------EGYD 1125
+R+++G+V Q+P F + +I N+ NG + S L+ E D
Sbjct: 81 VSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKD 140
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
L ++LSGGQ+QR+ IAR I +P+++L+DE SALD S +++ ++++ T
Sbjct: 141 RLKSN-AMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYT 199
Query: 1186 TLVVAHRL-STIKNAHLIAVVSQGMIVEKGSHESLIST 1222
++V H + + + A G +VE G + + +T
Sbjct: 200 IIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTT 237
|
Length = 252 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 1e-17
Identities = 68/238 (28%), Positives = 120/238 (50%), Gaps = 20/238 (8%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++++ V+F+ R + I + L +P G I A++G SG GK+T++ LI P GE+
Sbjct: 8 VDMRGVSFT---RGNRCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEI 64
Query: 445 LIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAA 500
L DG N + +L +R+++ ++ Q L + ++ DN+AY +E Q A
Sbjct: 65 LFDGENIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAY----PLREHTQLPAPLL 120
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+++ +K GL +LSGG +R A+ARA+ +P +++ DE D +
Sbjct: 121 HSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMG 180
Query: 561 MVQEALDRV--MINRTTVIVSHR----LSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
++ + + + + T V+VSH LS+ +A I+A KIV G+ L NP
Sbjct: 181 VLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVA---DKKIVAHGSAQALQANP 235
|
Length = 269 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 84.1 bits (208), Expect = 2e-17
Identities = 52/186 (27%), Positives = 102/186 (54%), Gaps = 8/186 (4%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +++ L I G+ +A+ G +GSGK++++ L+ +PS G I G Q W+
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSGRISFSSQFSWI-- 109
Query: 1088 QMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
M +E ++F D R ++ + I+ E +T++GE G+ LSGGQ+ R+
Sbjct: 110 -MPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARI 168
Query: 1144 AIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
++ARA+ K+ + LLD LD+ +E+ + + + ++M ++T ++V ++ +K A I
Sbjct: 169 SLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKI 228
Query: 1203 AVVSQG 1208
++ +G
Sbjct: 229 LILHEG 234
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 81.9 bits (203), Expect = 2e-17
Identities = 60/233 (25%), Positives = 112/233 (48%), Gaps = 39/233 (16%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++ D+ +Y + ++L+ L + G I +G +G+GK+T + +I P +GE+
Sbjct: 1 LKTNDLTKTYGKK---RVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHAT-----KEEIQAAAE 498
DG + ++ +IG + + P + + R+N+ + A K+ I
Sbjct: 58 TFDGKSYQK--NIEALRRIGALIEAPGFYPNLTARENL---RLLARLLGIRKKRID---- 108
Query: 499 AANASHFIKNLPQGLDTNVGEHGI------QLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ LD VG S G KQR+ IA A++ +P +L+LDE T+
Sbjct: 109 ------------EVLDV-VGLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTN 155
Query: 553 ALDSESGRMVQEALDRVMINRTTVIV-SHRLSLIRN-ANIIAVIQQGKIVEKG 603
LD + + ++E + + TV++ SH LS I+ A+ I +I +GK++E+G
Sbjct: 156 GLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 85.3 bits (211), Expect = 2e-17
Identities = 70/232 (30%), Positives = 119/232 (51%), Gaps = 27/232 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+L V+ SY + ++NG + +G L+G +G+GKST+ +I P AG++
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVL-LSSSIRDN-IAYG-----KTHATKEEIQAAA 497
+ GV + + + R +IG+V Q L L ++R+N + +G T + I +
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E A L D V + LSGG K+R+ +ARA+I DP++L+LDE T+ LD
Sbjct: 158 EFAR-------LESKADARVSD----LSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 206
Query: 558 SGRMVQEALDRVMINR--TTVIVSHRLSLI-RNANIIAVIQQG-KIVEKGTH 605
+ ++ E L R ++ R T ++ +H + R + + V++ G KI E H
Sbjct: 207 ARHLIWERL-RSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPH 257
|
Length = 340 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 82.3 bits (204), Expect = 2e-17
Identities = 56/210 (26%), Positives = 97/210 (46%), Gaps = 16/210 (7%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458
L+ + G I L+G +G+GK+T I +I P +GEVL DG L
Sbjct: 12 RVTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIA---- 67
Query: 459 IREKIGLVSQEPVL-LSSSIRDNIAY-GKTHA-TKEEIQAAAEAANASHFIKNLPQGLDT 515
R +IG + +E L + D + Y + KEE +++ L L
Sbjct: 68 ARNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEA-----RRRIDEWLERL--ELSE 120
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTT 575
+ +LS G +Q+V A+I DP +L+LDE S LD + ++++ + + T
Sbjct: 121 YANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNVELLKDVIRELARAGKT 180
Query: 576 VIVS-HRLSLI-RNANIIAVIQQGKIVEKG 603
VI+S H++ L+ + + ++ +G+ V G
Sbjct: 181 VILSTHQMELVEELCDRVLLLNKGRAVLYG 210
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 87.7 bits (217), Expect = 3e-17
Identities = 70/231 (30%), Positives = 112/231 (48%), Gaps = 30/231 (12%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
F + ++ D+ L IP G +A+VG +G GK+++IS + H V I
Sbjct: 622 FSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAML----GELSHAETSSVVI 677
Query: 1078 QKLQVKWLRQQMGVVSQEPVLFSDTIRANI-------AEMANANGFISGLQEGYD----- 1125
R + V Q +F+ T+R NI +E ++ LQ D
Sbjct: 678 --------RGSVAYVPQVSWIFNATVRENILFGSDFESERYWRAIDVTALQHDLDLLPGR 729
Query: 1126 --TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA-LDQVMV 1182
T +GERGV +SGGQKQRV++ARA+ I + D+ SALD V D+ + +
Sbjct: 730 DLTEIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELK 789
Query: 1183 DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGI-YTSLIE 1232
+T ++V ++L + I +VS+GMI E+G+ L +K+G + L+E
Sbjct: 790 GKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAEL--SKSGSLFKKLME 838
|
Length = 1495 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (204), Expect = 3e-17
Identities = 66/219 (30%), Positives = 103/219 (47%), Gaps = 27/219 (12%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--Q 1078
E + L + AL+G SG GKST + L R D +G I +G I
Sbjct: 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76
Query: 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF----------------ISGLQE 1122
K+ + LR+++G+V Q+P F ++ N+A G + +E
Sbjct: 77 KMDLVELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE 136
Query: 1123 GYDTLVGERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
D L +R Q SGGQ+QR+ IARA+ PK++LLDE TSALD S +++ L ++
Sbjct: 137 TKDNL--DRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELK 194
Query: 1182 VDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESL 1219
T ++V H L + + A + G ++E G E +
Sbjct: 195 HQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233
|
Length = 251 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 3e-17
Identities = 62/221 (28%), Positives = 107/221 (48%), Gaps = 18/221 (8%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
FKY + + +I G+ ++++G++GSGKST L+ ++ G + +DG +
Sbjct: 12 FKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELL 71
Query: 1078 QKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANG-----FISGLQEGYDTL--- 1127
V LR+++G+V Q P T+ ++A G I + E +
Sbjct: 72 TAENVWNLRRKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNML 131
Query: 1128 --VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD----IESERVVQDALDQVM 1181
+LSGGQKQRVA+A I P+I++LDE+TS LD E RV+ + ++
Sbjct: 132 DFKTREPARLSGGQKQRVAVAGIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQ 191
Query: 1182 VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222
+ T L + H L ++ I V+ G I+++ + L +T
Sbjct: 192 L--TVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230
|
Length = 277 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 82.0 bits (202), Expect = 3e-17
Identities = 54/207 (26%), Positives = 97/207 (46%), Gaps = 21/207 (10%)
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI----TLDGVEIQK 1079
+ ++ + IP G+ +VG+ G GKS+++ + G + + +
Sbjct: 12 SGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFE 71
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYD 1125
R + +Q+P L + T+ NI + + I L G
Sbjct: 72 ATRSRNRYSVAYAAQKPWLLNATVEENITFGSPFNKQRYKAVTDACSLQPDIDLLPFGDQ 131
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-SERVVQDALDQVMVD- 1183
T +GERG+ LSGGQ+QR+ +ARA+ + I+ LD+ SALDI S+ ++Q+ + + + D
Sbjct: 132 TEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDD 191
Query: 1184 -RTTLVVAHRLSTIKNAHLIAVVSQGM 1209
RT ++V H+L + +A I + G
Sbjct: 192 KRTLVLVTHKLQYLPHADWIIAMKDGS 218
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.4 bits (203), Expect = 4e-17
Identities = 56/189 (29%), Positives = 97/189 (51%), Gaps = 22/189 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-----HITLDGVEI--QK 1079
+V +++ + P + A++G SG GKST++ L R D SG + LD I
Sbjct: 18 QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPN 77
Query: 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGY 1124
L V LR+++G+V Q+P F +I N+A E+ + + L +
Sbjct: 78 LDVVNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEV 137
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ + G+ LSGGQ+QR+ IAR + EP+++L+DE SALD S +++ + ++ +
Sbjct: 138 KDNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNY 197
Query: 1185 TTLVVAHRL 1193
T +V H +
Sbjct: 198 TIAIVTHNM 206
|
Length = 251 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.2 bits (203), Expect = 4e-17
Identities = 62/214 (28%), Positives = 100/214 (46%), Gaps = 27/214 (12%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQKLQ 1081
V + + L IP AL+G SG GKST++ R + + G + L G I
Sbjct: 18 HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPD 77
Query: 1082 VKWL--RQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLV---------- 1128
V + R+++G+V Q P F TI N+A NG + +E D V
Sbjct: 78 VDPIEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKE-LDERVEWALKKAALW 136
Query: 1129 -------GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181
+ LSGGQ+QR+ IARA+ +PKILL+DE T+ +D +++ L ++
Sbjct: 137 DEVKDRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELK 196
Query: 1182 VDRTTLVVAHR-LSTIKNAHLIAVVSQGMIVEKG 1214
+ T ++V H + + +A + G ++E G
Sbjct: 197 KEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230
|
Length = 253 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 4e-17
Identities = 76/247 (30%), Positives = 121/247 (48%), Gaps = 43/247 (17%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L+ V SY Q++ G L + +G LVG SG GKST++ ++ +GE+
Sbjct: 4 LKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEI 61
Query: 445 LIDG--VNLKEFQLKWIREK-IGLVSQEPVLLSS-SIRDNIAYG-KTHAT-KEEIQA-AA 497
I G VN E ++ I +V Q L S+R+N+AYG K K EI+ A
Sbjct: 62 WIGGRVVNELE-----PADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVA 116
Query: 498 EAANA---SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
EAA + P+ +LSGGQ+QRVA+ RA++++P + L DE S L
Sbjct: 117 EAARILELEPLLDRKPR-----------ELSGGQRQRVAMGRAIVREPAVFLFDEPLSNL 165
Query: 555 DSE-SGRMVQEALDRVMINR-------TTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTH 605
D++ +M R+ I R T++ V+H ++ + A+ + V+ G + GT
Sbjct: 166 DAKLRVQM------RLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTP 219
Query: 606 SELLENP 612
E+ E P
Sbjct: 220 VEVYEKP 226
|
Length = 356 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (204), Expect = 4e-17
Identities = 74/235 (31%), Positives = 116/235 (49%), Gaps = 30/235 (12%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
D+ F Y DE +L G L + LVG +G GKST+ + PQ G VL G
Sbjct: 6 DLWFRYQ---DEPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQG 62
Query: 449 --VNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEEIQAAAEAA-- 500
++ + L +R+++ V Q+P + + I +IA+ + + EI + A
Sbjct: 63 KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALT 122
Query: 501 --NASHFIKNLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+A HF ++ P IQ LS GQK+RVAIA A++ R LLLDE T+ LD
Sbjct: 123 LVDAQHF-RHQP-----------IQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP- 169
Query: 558 SGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609
+GR A+ R ++ +I SH + LI ++ + V++QG+I+ G E+
Sbjct: 170 AGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVF 224
|
Length = 271 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 5e-17
Identities = 63/222 (28%), Positives = 114/222 (51%), Gaps = 19/222 (8%)
Query: 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073
L ++F+ + + D T+P AL G SGSGK+++I+++ P G I L+
Sbjct: 2 LELNFRQ-RLGNFAL--DANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELN 58
Query: 1074 G---VEIQK-LQVKWLRQQMGVVSQEPVLFSD-TIRANIAEM------ANANGFISGLQE 1122
G V+ +K + + ++++G V Q+ LF T+R N+ A + ++ L
Sbjct: 59 GRVLVDAEKGIFLPPEKRRIGYVFQDARLFPHYTVRGNLRYGMWKSMRAQFDQLVALL-- 116
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM- 1181
G + L+ LSGG+KQRVAI RA++ P++LL+DE ++LD+ +R + L+++
Sbjct: 117 GIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKREILPYLERLRD 176
Query: 1182 -VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
++ L V+H L + A + V+ G + G E +
Sbjct: 177 EINIPILYVSHSLDEVLRLADRVVVLENGKVKASGPLEEVWG 218
|
Length = 352 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 81.3 bits (201), Expect = 5e-17
Identities = 59/209 (28%), Positives = 99/209 (47%), Gaps = 32/209 (15%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR- 460
+N L +P ++ L+G +G+GKST++ +I P +GE++ DG W R
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDG-------HPWTRK 67
Query: 461 --EKIGLVSQEPVLLSS-SIRDNIAYGKTHAT-----KEEIQAAAEAANASHFIKNLPQG 512
KIG + + P L + + R+N+ K H T I + ++ K
Sbjct: 68 DLHKIGSLIESPPLYENLTARENL---KVHTTLLGLPDSRIDEVLNIVDLTNTGKK---- 120
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572
Q S G KQR+ IA A++ P++L+LDE T+ LD + ++E +
Sbjct: 121 ---KAK----QFSLGMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQ 173
Query: 573 RTTVIV-SHRLSLIRN-ANIIAVIQQGKI 599
TVI+ SH LS ++ A+ I +I +G +
Sbjct: 174 GITVILSSHILSEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 78.6 bits (195), Expect = 5e-17
Identities = 47/181 (25%), Positives = 80/181 (44%), Gaps = 56/181 (30%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ +S Y + + +D+ LTI PG I LVG +G+GKST++ L+ +P G +
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
T ++G Q
Sbjct: 58 TWGS-----------TVKIGYFEQ------------------------------------ 70
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190
LSGG+K R+A+A+ +++ P +LLLDE T+ LD+ES +++AL + T ++V+
Sbjct: 71 ----LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKE--YPGTVILVS 124
Query: 1191 H 1191
H
Sbjct: 125 H 125
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.9 bits (208), Expect = 6e-17
Identities = 71/244 (29%), Positives = 110/244 (45%), Gaps = 36/244 (14%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ L++V +Y D I L I G VG SG GKST++ +I D +G+
Sbjct: 3 SVTLRNVTKAYG---DVVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGD 59
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGK--THATKEEIQ----AA 496
+ I + + +G+V Q L S+ +N+++G A KEEI
Sbjct: 60 LFIGEKRMNDVPPA--ERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQV 117
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
AE +H + P+ L SGGQ+QRVAI R ++ +P + LLDE S LD
Sbjct: 118 AEVLQLAHLLDRKPKAL-----------SGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD- 165
Query: 557 ESGRMVQEALDRVMI-------NRTTVIVSH-RLSLIRNANIIAVIQQGKIVEKGTHSEL 608
+ VQ R+ I RT + V+H ++ + A+ I V+ G++ + G EL
Sbjct: 166 -AALRVQM---RIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLEL 221
Query: 609 LENP 612
P
Sbjct: 222 YHYP 225
|
Length = 369 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 7e-17
Identities = 75/227 (33%), Positives = 112/227 (49%), Gaps = 46/227 (20%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF---QLKWIREKIGLVSQEPVLLS 474
LVG SGSGKST + R + Q GE+ DG L QL +R +I +V Q+P +
Sbjct: 317 LVGESGSGKSTTGLALLRLINSQ-GEIWFDGQPLHNLNRRQLLPVRHRIQVVFQDP---N 372
Query: 475 SSI--RDN----IAYG-KTH------ATKEE--IQAAAEAANASHFIKNLPQGLD-TNVG 518
SS+ R N I G + H A +E+ I E GLD
Sbjct: 373 SSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV------------GLDPETRH 420
Query: 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE---ALDRVMINR-- 573
+ + SGGQ+QR+AIARA+I P +++LDE TS+LD + VQ AL + + +
Sbjct: 421 RYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLD----KTVQAQILALLKSLQQKHQ 476
Query: 574 -TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
+ +SH L ++R + + V++QG++VE+G + P Y R
Sbjct: 477 LAYLFISHDLHVVRALCHQVIVLRQGEVVEQGDCERVFAAPQQEYTR 523
|
Length = 529 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (205), Expect = 7e-17
Identities = 70/232 (30%), Positives = 108/232 (46%), Gaps = 25/232 (10%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHIT 1071
+F Y R V DL L I K A +G SG GKST + L + D G I
Sbjct: 87 NFWYMNRTK-HVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIY 145
Query: 1072 LDGVEI--QKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF------------- 1116
G +K+ LR ++G+V Q+P F +I N+A NG
Sbjct: 146 FLGTNTRSKKISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKS 205
Query: 1117 --ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
+ L + + + G LSGGQ+QR+ IARAI EP++LL+DE TSALD + ++
Sbjct: 206 LKSAALWDEVKDDLDKAGNALSGGQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIE 265
Query: 1175 DALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL-ISTKN 1224
+ + ++ + ++V H ++ + + QG I E G +++ I KN
Sbjct: 266 ELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIHPKN 317
|
Length = 329 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 8e-17
Identities = 46/146 (31%), Positives = 73/146 (50%), Gaps = 15/146 (10%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVEIQKLQVKWLRQQMG 1090
TI G+ + L+G SG GKST++S + +G + L+ + L ++Q+G
Sbjct: 23 FTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPAA--QRQIG 80
Query: 1091 VVSQEPVLFSD---------TIRANIAEMANANGFISGLQE-GYDTLVGERGVQLSGGQK 1140
++ Q+ +LF + A + A N + L+ G D + LSGGQ+
Sbjct: 81 ILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFHQDPATLSGGQR 140
Query: 1141 QRVAIARAIVKEPKILLLDEATSALD 1166
RVA+ RA++ +PK LLLDE S LD
Sbjct: 141 ARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 80.4 bits (199), Expect = 9e-17
Identities = 47/158 (29%), Positives = 76/158 (48%), Gaps = 29/158 (18%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHITLDGVEIQKLQVK---- 1083
D+ L + G+ +A++G SGSGK+T IS +SG I +G + Q +
Sbjct: 25 DVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKPDQFQKCVA 84
Query: 1084 WLRQQ--------------MGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVG 1129
++RQ + + P SD IR E L++ T +G
Sbjct: 85 YVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVE-------DVLLRDLALTRIG 137
Query: 1130 ERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
V+ +SGG+++RV+IA ++ +PK+L+LDE TS LD
Sbjct: 138 GNLVKGISGGERRRVSIAVQLLWDPKVLILDEPTSGLD 175
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 1e-16
Identities = 63/229 (27%), Positives = 115/229 (50%), Gaps = 27/229 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VS Y T+ ++ D+ L IP G +++G +G+GKST++S++ R SG IT+DG+
Sbjct: 7 VSKSYGTKVVLD---DVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGL 63
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TI--------------RANIAEMANANGFISGL 1120
E+ K L +++ ++ QE + S T+ R + N I L
Sbjct: 64 ELTSTPSKELAKKLSILKQENHINSRLTVRDLVGFGRFPYSQGRLTKEDRRIINEAIEYL 123
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
+ L +LSGGQ+QR IA + ++ +LLDE + LD++ + L +
Sbjct: 124 H--LEDLSDRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKHSVQIMKILRR- 180
Query: 1181 MVD---RTTLVVAHRL--STIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
+ D +T +VV H + ++ + H++A + G +V++GS + +I +
Sbjct: 181 LADELGKTIVVVLHDINFASCYSDHIVA-LKNGKVVKQGSPDEIIQPEI 228
|
Length = 252 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.8 bits (199), Expect = 1e-16
Identities = 62/213 (29%), Positives = 100/213 (46%), Gaps = 27/213 (12%)
Query: 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
+ ++ ++ +SF Y T IE + + I K A++G SG GKST I L R
Sbjct: 1 NQQLIPAIKVKDLSFYYNTSKAIE---GISMDIYRNKVTAIIGPSGCGKSTFIKTLNRIS 57
Query: 1064 D-----PSSGHITLDGVEI--QKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116
+ G + G I ++ + LR+Q+G+V Q P F +I N+A +
Sbjct: 58 ELEGPVKVEGVVDFFGQNIYDPRININRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAK 117
Query: 1117 ISGL----------------QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
+ QE D L + + LSGGQ+QR+ IARA+ +PK+LL+DE
Sbjct: 118 LPQADLDEIVESALKGAALWQEVKDKL-NKSALGLSGGQQQRLCIARALAIKPKVLLMDE 176
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
SALD + V++ + + + T +V H +
Sbjct: 177 PCSALDPIATMKVEELIHSLRSELTIAIVTHNM 209
|
Length = 259 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 77.5 bits (192), Expect = 1e-16
Identities = 55/215 (25%), Positives = 84/215 (39%), Gaps = 72/215 (33%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IEL++++ +Y + +L L I G LVG +G+GKST++ LI +P G V
Sbjct: 1 IELENLSKTYGGKL---LLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIV 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
KIG Q LS
Sbjct: 58 TWGS-----------TVKIGYFEQ----LS------------------------------ 72
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
GG+K R+A+A+ ++++P +LLLDE T+ LD ES ++E
Sbjct: 73 ---------------------GGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEE 111
Query: 565 ALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGK 598
AL T ++VSH + A I ++ GK
Sbjct: 112 ALKE--YPGTVILVSHDRYFLDQVATKIIELEDGK 144
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (201), Expect = 1e-16
Identities = 64/222 (28%), Positives = 101/222 (45%), Gaps = 45/222 (20%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG-----VEIQKL--- 1080
RD+ + PG+ + +VGESGSGK+T+++ L P +G + ++ L
Sbjct: 22 CRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81
Query: 1081 QVKWL-RQQMGVVSQEPVLFSDTIR------ANIAE--MANAN---GFISGLQEGYDTL- 1127
+ + L R + G V Q P D +R NI E MA G I D L
Sbjct: 82 ERRRLLRTEWGFVHQHP---RDGLRMQVSAGGNIGERLMAVGARHYGDIR--ATAGDWLE 136
Query: 1128 --------VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ----D 1175
+ + SGG +QR+ IAR +V P+++ +DE T LD+ VQ D
Sbjct: 137 RVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVS----VQARLLD 192
Query: 1176 ALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
L ++ + ++V H L+ + AH + V+ QG +VE G
Sbjct: 193 LLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234
|
Length = 258 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 79.5 bits (197), Expect = 2e-16
Identities = 58/236 (24%), Positives = 102/236 (43%), Gaps = 31/236 (13%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
E+ ++N Y IL G L +P G + ++G +G GK+T++ + ++G +
Sbjct: 2 EVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 446 IDGVN---LKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
+DG + L + R I V Q R+ +E + A
Sbjct: 59 LDGEDITKLPPHER--ARAGIAYVPQG--------REIFP---RLTVEENLLTGLAALPR 105
Query: 503 SHFIKNLPQG-------LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
+ +P L +G G LSGGQ+Q++AIARA++ P++LLLDE T +
Sbjct: 106 RS--RKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDEPTEGIQ 163
Query: 556 SESGRMVQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
+ + + R+ ++V L R A+ V+++G++V G EL
Sbjct: 164 PSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDEL 219
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 2e-16
Identities = 61/227 (26%), Positives = 106/227 (46%), Gaps = 39/227 (17%)
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078
+Y R V + L++ G+ + L+G +G+GK+T ++ P SG I LDG +I
Sbjct: 9 RYGKRK---VVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDIT 65
Query: 1079 KLQV-KWLRQQMGVVSQEPVLFSD-TIRANI---AEMAN---------ANGFISGLQEGY 1124
KL + K R +G + QE +F T+ NI E+ +
Sbjct: 66 KLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEFH--I 123
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD----IESERVVQDALDQ- 1179
L + LSGG+++RV IARA+ PK LLLDE + +D + +++++ D+
Sbjct: 124 THLRKSKASSLSGGERRRVEIARALATNPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRG 183
Query: 1180 ---VMVD---RTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220
++ D R TL + R A++I +G ++ +G+ E +
Sbjct: 184 IGVLITDHNVRETLSITDR------AYII---YEGKVLAEGTPEEIA 221
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 2e-16
Identities = 69/241 (28%), Positives = 109/241 (45%), Gaps = 54/241 (22%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEV---LIDGVNLKEFQL------KWIREKI 463
G + +VG SGSGKST++ + P G + G L+ +QL + +R +
Sbjct: 29 GEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAERRRLMRTEW 88
Query: 464 GLVSQEP---VLLSSSIRDNIA----------YGKTHAT------KEEIQAAAEAANASH 504
G V Q P + + S NI YG AT + EI
Sbjct: 89 GFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIRATAQDWLEEVEIDPTR------- 141
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQ 563
I +LP+ SGG +QR+ IAR ++ PR++ +DE T LD S R++
Sbjct: 142 -IDDLPR-----------AFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLD 189
Query: 564 EALDRVMI---NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
L R ++ +IV+H L + R A + V+QQG++VE G ++L++P Y +L
Sbjct: 190 --LLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGLTDQVLDDPQHPYTQL 247
Query: 620 I 620
+
Sbjct: 248 L 248
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.0 bits (197), Expect = 3e-16
Identities = 59/216 (27%), Positives = 102/216 (47%), Gaps = 23/216 (10%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QKLQV 1082
D+ + I AL+G SG GKST + + R D S G I +G+ I + V
Sbjct: 38 NDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTL 1127
LR+++G+V Q+P F +I NI E+ + + L +
Sbjct: 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDR 157
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL 1187
+ + LSGGQ+QR+ IAR + +P +LLLDE SALD S +++ + ++ + + +
Sbjct: 158 LHSSALSLSGGQQQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSII 217
Query: 1188 VVAHRL-STIKNAHLIAVVSQGMIVEKGSHESLIST 1222
+V H + ++ + A G +VE E + ++
Sbjct: 218 IVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253
|
Length = 268 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 3e-16
Identities = 58/188 (30%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEI--QKLQV 1082
+++ L I + A++G SG GKST I L R + PS +G I I + V
Sbjct: 41 KNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE--RGVQ------ 1134
+ LR +G+V Q+P F +I N+ +G ++ D +V + RG
Sbjct: 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKD--KKTLDEIVEKSLRGAAIWDELK 158
Query: 1135 ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
LSGGQ+QR+ IAR + EP ++L+DE TSALD S V++ + ++ D +
Sbjct: 159 DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYS 218
Query: 1186 TLVVAHRL 1193
++V H +
Sbjct: 219 IIIVTHNM 226
|
Length = 271 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-16
Identities = 59/174 (33%), Positives = 94/174 (54%), Gaps = 24/174 (13%)
Query: 1043 ALVGESGSGKSTVISLLQRFYD--PS---SGHITLDGVEIQ-KLQVK-WLRQQMGVVSQE 1095
A++G SG GKST + + R D PS +G + DG +I K + LR+++G+V Q+
Sbjct: 69 AIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDEVLLRKKIGMVFQK 128
Query: 1096 PVLFSDTIRANIAEMANANGF-----ISGLQEG-------YDTLVGER----GVQLSGGQ 1139
P F +I NIA +G + + E +D V +R + LSGGQ
Sbjct: 129 PNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDE-VSDRLDKNALGLSGGQ 187
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
+QR+ +AR + EP+ILLLDE TSALD ++ ++D + ++ T ++V H +
Sbjct: 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
|
Length = 286 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 83.1 bits (206), Expect = 3e-16
Identities = 57/183 (31%), Positives = 90/183 (49%), Gaps = 22/183 (12%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VS Y + +DL I G IA+VG +G+GKST++ LL P SG + +
Sbjct: 327 VSKGYDGGR--LLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVG-- 382
Query: 1076 EIQKLQVKWLRQ-QMGVVSQEPVL------FSDTIRANIAEMANANGFISGLQEGYDTLV 1128
+ +++ + Q + + + VL F D + GF QE V
Sbjct: 383 --ETVKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRFGFTGEDQE---KPV 437
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
G LSGG+K R+ +A+ +++ P +LLLDE T+ LDIES +++AL + T L+
Sbjct: 438 GV----LSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLD--FEGTVLL 491
Query: 1189 VAH 1191
V+H
Sbjct: 492 VSH 494
|
Length = 530 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 81.1 bits (200), Expect = 3e-16
Identities = 66/259 (25%), Positives = 111/259 (42%), Gaps = 36/259 (13%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG- 1068
V+ L F + ++ T K ++G SGSGKST+++ G
Sbjct: 23 RVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGT 82
Query: 1069 ----------HITLDGVEIQKLQ-----VKWLRQQMGVVSQEP--VLFSDTIRANIAEMA 1111
+ K LR+++ +V Q P LF DTI +I
Sbjct: 83 IQVGDIYIGDKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGP 142
Query: 1112 NANG------------FISGLQEGYDTLVGERG-VQLSGGQKQRVAIARAIVKEPKILLL 1158
A G +++ + L ER LSGGQK+RVAIA + +P+IL+
Sbjct: 143 VALGVKKSEAKKLAKFYLNKMGLDDSYL--ERSPFGLSGGQKRRVAIAGILAIQPEILIF 200
Query: 1159 DEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSH 1216
DE T+ LD + E ++Q LD ++T V+ H + + + A + V+ +G I++ G+
Sbjct: 201 DEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTGTP 260
Query: 1217 ESLISTKNGI-YTSLIEPH 1234
+ + ++ I TS+ P
Sbjct: 261 YEIFTDQHIINSTSIQVPR 279
|
Length = 320 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 3e-16
Identities = 68/260 (26%), Positives = 124/260 (47%), Gaps = 40/260 (15%)
Query: 385 IELKDVNFSYPAR-PDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I++K++ + + P E + L+ + I G A++G +GSGK+T I + P G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 443 EV---LIDGVNLKEF---------------------QLKWIREKIGLVSQ--EPVLLSSS 476
+ D N K+ ++K IR ++G+V Q E L +
Sbjct: 63 TIEWIFKDEKNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQT 122
Query: 477 IRDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVA 533
I +I +G +KEE A + A+ +I+ + GLD + + +LSGGQK+RVA
Sbjct: 123 IEKDIIFGPVSMGVSKEE---AKK--RAAKYIELV--GLDESYLQRSPFELSGGQKRRVA 175
Query: 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN-RTTVIVSHRL-SLIRNANII 591
+A + +P L+ DE T+ LD + + + E D + +T ++V+H L +++
Sbjct: 176 LAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRT 235
Query: 592 AVIQQGKIVEKGTHSELLEN 611
+ GKI++ G ++L +
Sbjct: 236 IFFKDGKIIKDGDTYDILSD 255
|
Length = 305 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 82.8 bits (205), Expect = 4e-16
Identities = 75/251 (29%), Positives = 117/251 (46%), Gaps = 52/251 (20%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKS-TVISLIQRFYDPQA----GEVLIDGVNL---K 452
++N L I G ALVG SGSGKS T +S+++ P G++ G +L
Sbjct: 23 TVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHAS 82
Query: 453 EFQLKWIR-EKIGLVSQEP----------------VL-LSSSIRDNIAYGKTHATKEEI- 493
E L+ +R KI ++ QEP VL L +R A G+ + +
Sbjct: 83 EQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVG 142
Query: 494 --QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
QAA + H QLSGG++QRV IA A++ P +L+ DE T
Sbjct: 143 IRQAAKRLTDYPH------------------QLSGGERQRVMIAMALLTRPELLIADEPT 184
Query: 552 SALD-SESGRMVQ--EALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
+ALD S +++Q L + + N + ++H LS++R A+ +AV+Q G+ VE+ +
Sbjct: 185 TALDVSVQAQILQLLRELQQEL-NMGLLFITHNLSIVRKLADRVAVMQNGRCVEQNRAAT 243
Query: 608 LLENPYGAYNR 618
L P Y +
Sbjct: 244 LFSAPTHPYTQ 254
|
Length = 529 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 4e-16
Identities = 67/232 (28%), Positives = 110/232 (47%), Gaps = 36/232 (15%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085
+EV + + L I G+ +A+VG SGSGKST++++L P+SG + G ++ L L
Sbjct: 21 VEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADAL 80
Query: 1086 ----RQQMGVVSQE---------------PVLFSDTIRANIAEMANANGFISGLQEGYDT 1126
R+ G + Q P +++ R A GL++
Sbjct: 81 AQLRREHFGFIFQRYHLLSHLTAAQNVEVPAVYAGLERKQRLLRAQELLQRLGLED---- 136
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR-- 1184
V + QLSGGQ+QRV+IARA++ +++L DE T ALD S V L Q + DR
Sbjct: 137 RVEYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQ-LRDRGH 195
Query: 1185 TTLVVAH---------RLSTIKNAHLIA-VVSQGMIVEKGSHESLISTKNGI 1226
T ++V H R+ I++ ++ +Q + G E +++T +G
Sbjct: 196 TVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAQEKVNVAGGTEPVVNTASGW 247
|
Length = 648 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 4e-16
Identities = 53/168 (31%), Positives = 77/168 (45%), Gaps = 28/168 (16%)
Query: 403 LNGFCLL------IPNGTIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGVNLKE 453
L G CLL I G I L+G SG GKST++S + Q GE+ ++ L
Sbjct: 12 LPGSCLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLD- 70
Query: 454 FQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG-----KTHATKEEIQAAAEAANASHFIK 507
L + +IG++ Q+ +L S+ N+ + K +A + AA E +
Sbjct: 71 -MLPAAQRQIGILFQDALLFPHLSVGQNLLFALPATLKGNARRNAANAALERSGLDGAFH 129
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
P LSGGQ+ RVA+ RA++ P+ LLLDE S LD
Sbjct: 130 QDPA-----------TLSGGQRARVALLRALLAQPKALLLDEPFSRLD 166
|
Length = 213 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 76.8 bits (190), Expect = 4e-16
Identities = 53/186 (28%), Positives = 80/186 (43%), Gaps = 43/186 (23%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ +S P + +DL I PG + + G SG+GKS++ L + SG I
Sbjct: 1 IELENLSLATPD--GRVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRI 58
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGY---DTL 1127
+ E + + Q P L T+R + Y D L
Sbjct: 59 GMPEGE-----------DLLFLPQRPYLPLGTLREQLI---------------YPWDDVL 92
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL 1187
SGG++QR+A AR ++ +PK + LDEATSALD ESE + L + T+
Sbjct: 93 --------SGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKE---LGITV 141
Query: 1188 V-VAHR 1192
+ V HR
Sbjct: 142 ISVGHR 147
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 5e-16
Identities = 65/196 (33%), Positives = 94/196 (47%), Gaps = 41/196 (20%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--------F 454
L G L I G +L+G SG GKST+++LI P +G V+++G + E F
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPGPDRMVVF 60
Query: 455 Q----LKWIREKIGLVSQEPVLLSSSIRDNIAYG----KTHATKEEIQAAAEAANASHFI 506
Q L W+ ++R+NIA +K E +A E A +
Sbjct: 61 QNYSLLPWL----------------TVRENIALAVDRVLPDLSKSERRAIVEEHIA---L 101
Query: 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
L + D G QLSGG KQRVAIARA+ P++LLLDE ALD+ + +QE L
Sbjct: 102 VGLTEAADKRPG----QLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEEL 157
Query: 567 DRVMINR--TTVIVSH 580
++ T ++V+H
Sbjct: 158 MQIWEEHRVTVLMVTH 173
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 82.4 bits (204), Expect = 6e-16
Identities = 56/233 (24%), Positives = 112/233 (48%), Gaps = 38/233 (16%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ----AGEVLIDG--VNLKEF 454
+L + G + A++G+SG+GK+T+++ + F P+ +G VL++G ++ KE
Sbjct: 39 HLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKE- 96
Query: 455 QLKWIREKIGLVSQEPVLLSS-SIRDNIAYG-----KTHATKEEIQAAAEAANASHFIKN 508
+R V Q+ + + + ++R+++ + TK+E + +
Sbjct: 97 ----MRAISAYVQQDDLFIPTLTVREHLMFQAHLRMPRRVTKKEKRER---------VDE 143
Query: 509 LPQGL------DTNVGEHGIQ--LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ Q L +T +G G LSGG+++R+A A ++ DP +L DE TS LDS
Sbjct: 144 VLQALGLRKCANTRIGVPGRVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAY 203
Query: 561 MVQEALDRVMINRTTVIVS-HRLS--LIRNANIIAVIQQGKIVEKGTHSELLE 610
V + L + T+I + H+ S L + I ++ +G++ G+ + +
Sbjct: 204 SVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGSPDQAVP 256
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 79.6 bits (196), Expect = 7e-16
Identities = 64/239 (26%), Positives = 117/239 (48%), Gaps = 24/239 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+L V+ SY D+ ++N I G L+G +G+GKST+ ++ P G++
Sbjct: 5 IDLVGVSKSYG---DKVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKI 61
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVL-LSSSIRDNI-AYGK-----THATKEEIQAAA 497
+ G + + + R IG+V Q L ++R+N+ +G+ T + I +
Sbjct: 62 TVLGEPVPS-RARLARVAIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLL 120
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E A L D V LSGG K+R+ +ARA+I DP++L+LDE T+ LD
Sbjct: 121 EFAR-------LESKADVRVA----LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPH 169
Query: 558 SGRMVQEALDRVM-INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENPYG 614
+ ++ E L ++ +T ++ +H + R + + V++ G+ + +G L++ G
Sbjct: 170 ARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIG 228
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 8e-16
Identities = 59/242 (24%), Positives = 114/242 (47%), Gaps = 44/242 (18%)
Query: 377 KLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
++ ++ G +++DV+F+ R G I + G G+G++ + +
Sbjct: 265 EVRNLSGGGKVRDVSFT--VRA--------------GEILGIAGLVGAGRTELARALFGA 308
Query: 437 YDPQAGEVLIDGVNLKEFQLK----WIREKIGLVS----QEPVLLSSSIRDNIAYG--KT 486
+GE+L+DG K +++ I+ I V E ++L SI +NI +
Sbjct: 309 RPASSGEILLDG---KPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRR 365
Query: 487 HATKEEIQAAAEAANASHFIKNL---PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543
+ + I E A A +I+ L + +G LSGG +Q+V +AR + DP+
Sbjct: 366 FSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGT----LSGGNQQKVVLARWLATDPK 421
Query: 544 ILLLDEATSALD----SESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGK 598
+L+LDE T +D +E R+++E + +++S L L+ ++ I V+++G+
Sbjct: 422 VLILDEPTRGIDVGAKAEIYRLIRELAAE---GKAILMISSELPELLGLSDRILVMREGR 478
Query: 599 IV 600
IV
Sbjct: 479 IV 480
|
Length = 500 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 8e-16
Identities = 61/211 (28%), Positives = 111/211 (52%), Gaps = 19/211 (9%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK-IGLVSQEPV 471
G A++G +GSGKST+ ++ +P +GE+LI+ L F R K I ++ Q+P
Sbjct: 39 GQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPL-HFGDYSFRSKRIRMIFQDP- 96
Query: 472 LLSSSI--RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL---DTNVGEHGIQLSG 526
++S+ R I + E F GL N H L+
Sbjct: 97 --NTSLNPRLRIGQILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPH--MLAP 152
Query: 527 GQKQRVAIARAMIKDPRILLLDEATSALD----SESGRMVQEALDRVMINRTTVIVSHRL 582
GQKQRVA+ARA+I P+I++ DEA ++LD S+ ++ E ++ I + + V+ +
Sbjct: 153 GQKQRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHI 210
Query: 583 SLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+I++ ++ + V+ +G++VE+G+ +++L +P
Sbjct: 211 GMIKHISDQVLVMHEGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 1e-15
Identities = 68/240 (28%), Positives = 117/240 (48%), Gaps = 22/240 (9%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ VS+ YP ++ L I G+ I ++G++GSGKST+ L P G +
Sbjct: 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 1071 TLDGVE---IQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANGFI--SGLQEG 1123
+ G++ KLQ +R+ +G+V Q P T+ ++A N + +++
Sbjct: 60 LVSGIDTGDFSKLQ--GIRKLVGIVFQNPETQFVGRTVEEDLA-FGPENLCLPPIEIRKR 116
Query: 1124 YDTLVGERGVQ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
D + E G++ LSGGQ Q VA+A + EP+ L+ DE TS LD +S V
Sbjct: 117 VDRALAEIGLEKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTSMLDPDSGIAVL 176
Query: 1175 DALDQVMVDRTTLV-VAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233
+ + ++ T+V + H L + +A I V+ +G IV +G E+++S + L P
Sbjct: 177 ERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSDVSLQTLGLTPP 236
|
Length = 274 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 1e-15
Identities = 60/230 (26%), Positives = 116/230 (50%), Gaps = 19/230 (8%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
++ +++ Y H + + + I G+ A++G +G+GKST+ L PSSG I
Sbjct: 6 LKVEELNYNYSDGTH--ALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 1071 TLDG--VEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMA-NANGFISGLQEGYD 1125
DG ++ + + LR+ +G+V Q+P LFS ++ +++ A N +++ D
Sbjct: 64 LFDGKPIDYSRKGLMKLRESVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVD 123
Query: 1126 TLVGERGVQ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
+ G++ LS GQK+RVAIA +V EPK+L+LDE T+ LD +
Sbjct: 124 NALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKL 183
Query: 1177 LDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTK 1223
L ++ + T ++ H + + + V+ +G ++ +G+ + + + K
Sbjct: 184 LVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAEK 233
|
Length = 283 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 82.3 bits (203), Expect = 1e-15
Identities = 53/197 (26%), Positives = 105/197 (53%), Gaps = 8/197 (4%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V +++ + G+ +A+ G +GSGKS+++ ++ +PS G I G Q W+
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSGRISFSPQTSWI-- 498
Query: 1088 QMGVVSQEPVLFS---DTIR-ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
M ++ ++F D R ++ + I+ E T++GE G+ LSGGQ+ R+
Sbjct: 499 -MPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARI 557
Query: 1144 AIARAIVKEPKILLLDEATSALDIESER-VVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202
++ARA+ K+ + LLD + LD+ +E+ + + L ++M ++T ++V +L +K A I
Sbjct: 558 SLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKI 617
Query: 1203 AVVSQGMIVEKGSHESL 1219
++ +G+ G+ L
Sbjct: 618 LLLHEGVCYFYGTFSEL 634
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 1e-15
Identities = 64/224 (28%), Positives = 116/224 (51%), Gaps = 22/224 (9%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI----DGVNLKE--FQL 456
++ L + G I +VGTSG+GK+T+ +I +P +GEV + + V++ +
Sbjct: 300 VDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDG 359
Query: 457 KW-IREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD 514
+ + IG++ QE L ++ DN+ T A E+ A +K + G D
Sbjct: 360 RGRAKRYIGILHQEYDLYPHRTVLDNL----TEAIGLELPDELARMKAVITLKMV--GFD 413
Query: 515 TNVGEHGI-----QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL--D 567
E + +LS G++ RVA+A+ +IK+PRI++LDE T +D + V ++
Sbjct: 414 EEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKA 473
Query: 568 RVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
R + +T +IVSH + + + + A+++ GKIV+ G E++E
Sbjct: 474 REEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 59/178 (33%), Positives = 88/178 (49%), Gaps = 23/178 (12%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---QVKWLR-QQM 1089
L + G+TIAL+GESGSGKST++++L D SSG ++L G + ++ LR + +
Sbjct: 31 LVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKLRAKHV 90
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYD-----TLVGERGV---------QL 1135
G V Q +L N E + G L+ + G+ QL
Sbjct: 91 GFVFQSFMLIPTL---NALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDHLPAQL 147
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR-TTLV-VAH 1191
SGG++QRVA+ARA P +L DE T LD ++ + D L + + TTL+ V H
Sbjct: 148 SGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTH 205
|
Length = 228 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 1e-15
Identities = 61/217 (28%), Positives = 95/217 (43%), Gaps = 37/217 (17%)
Query: 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073
L + + +D+ +P G+ I L+G +G+GKST++ LL Y P SG +T+
Sbjct: 23 LGILGRKGEVGEFWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVR 82
Query: 1074 GVEIQKLQVKWLRQQMGV-VSQEPVLFSDTIRANI-----------AEMANANGFI---S 1118
G +V L +G+ P L T R NI E+ I S
Sbjct: 83 G------RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGLSRKEIDEKIDEIIEFS 130
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
L + D V S G K R+A A A EP ILL+DE + D + Q L
Sbjct: 131 ELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLR 186
Query: 1179 QVMVDRTTLV-VAHRLSTIKNAHLIAVVSQGMIVEKG 1214
+++ T++ V+H S+IK + + +++EKG
Sbjct: 187 ELLKQGKTVILVSHDPSSIKR-----LCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 77.5 bits (191), Expect = 1e-15
Identities = 58/200 (29%), Positives = 93/200 (46%), Gaps = 38/200 (19%)
Query: 1010 EVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
V + +F + + V R++ L++ G+ + L G SGSGKST++ L Y P
Sbjct: 6 NVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDE 65
Query: 1068 GHI-------TLDGVEIQKLQVKWLRQQ-MGVVSQ---------------EPVLFSDTIR 1104
G I +D V + +V +R+ +G VSQ EP+L + +
Sbjct: 66 GQILVRHEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL-ARGVP 124
Query: 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQL-----SGGQKQRVAIARAIVKEPKILLLD 1159
+A A A ++ L + ER L SGG++QRV IAR + + ILLLD
Sbjct: 125 REVAR-AKAADLLTRLN------LPERLWSLAPATFSGGEQQRVNIARGFIVDYPILLLD 177
Query: 1160 EATSALDIESERVVQDALDQ 1179
E T++LD + VV + + +
Sbjct: 178 EPTASLDATNRAVVVELIRE 197
|
Length = 235 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 75.9 bits (188), Expect = 1e-15
Identities = 51/233 (21%), Positives = 95/233 (40%), Gaps = 66/233 (28%)
Query: 377 KLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436
++ + ++DV+F + G I + G G+G++ + +
Sbjct: 6 EVRGLSVKGAVRDVSFE----------------VRAGEIVGIAGLVGNGQTELAEALFGL 49
Query: 437 YDPQAGEVLIDGVNLKEFQ-LKWIREKIGLVSQEP----VLLSSSIRDNIAYGKTHATKE 491
P +GE+ +DG + IR I V ++ ++L S+ +NIA
Sbjct: 50 RPPASGEITLDGKPVTRRSPRDAIRAGIAYVPEDRKREGLVLDLSVAENIA--------- 100
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
L LSGG +Q+V +AR + +DPR+L+LDE T
Sbjct: 101 -----------------LSS-----------LLSGGNQQKVVLARWLARDPRVLILDEPT 132
Query: 552 SALD----SESGRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKI 599
+D +E R+++E D + +++S L L+ + I V+ +G+I
Sbjct: 133 RGVDVGAKAEIYRLIRELADA---GKAVLLISSELDELLGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 79.9 bits (197), Expect = 1e-15
Identities = 62/241 (25%), Positives = 113/241 (46%), Gaps = 27/241 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I++ D++ D +L+G L + G++ LVG +G+GK+T++ I P AG V
Sbjct: 4 IDVSDLSVE---FGDTTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTV 60
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVL-LSSSIRDNIAYGKT-HATK---------EEI 493
L+ G +++ + ++ V Q+ L +R + G+T H ++ +
Sbjct: 61 LVAGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAV 120
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+ A E + F D V LSGG++QRV +ARA+ + +LLLDE T++
Sbjct: 121 ERAMERTGVAQFA-------DRPVTS----LSGGERQRVLLARALAQATPVLLLDEPTAS 169
Query: 554 LD-SESGRMVQEALDRVMINRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTHSELLEN 611
LD + R ++ V +T V H L L R + + ++ G++ G +++L
Sbjct: 170 LDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229
Query: 612 P 612
Sbjct: 230 D 230
|
Length = 402 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 80.9 bits (200), Expect = 1e-15
Identities = 70/239 (29%), Positives = 119/239 (49%), Gaps = 38/239 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + ++ Y +L G + G + AL+G +G+GKST++ +I P +G +
Sbjct: 12 LCARSISKQYSGVE---VLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTL 68
Query: 445 LIDGVNL------KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG--KTHATKEEIQA 495
I G K QL I LV QEP+L + S+++NI +G K A+ ++++
Sbjct: 69 EIGGNPCARLTPAKAHQL-----GIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ 123
Query: 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
A LD++ G L +Q V I R +++D RIL+LDE T++L
Sbjct: 124 LLAALG-CQL------DLDSSAG----SLEVADRQIVEILRGLMRDSRILILDEPTASLT 172
Query: 556 -SESGRM---VQEALDR-VMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
+E+ R+ ++E L + V I V +SH+L IR A+ I+V++ G I G ++L
Sbjct: 173 PAETERLFSRIRELLAQGVGI----VFISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 76.9 bits (190), Expect = 2e-15
Identities = 74/242 (30%), Positives = 113/242 (46%), Gaps = 58/242 (23%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEV--------LIDGVNLKEFQLKWI-REKI 463
G + +VG SGSGK+T+++ + P AGEV L D L E + + + R +
Sbjct: 32 GEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAERRRLLRTEW 91
Query: 464 GLVSQEP---VLLSSSIRDNIA----------YGKTHAT------KEEIQAAAEAANASH 504
G V Q P + + S NI YG AT + EI AA
Sbjct: 92 GFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERVEIDAAR------- 144
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQ 563
I +LP SGG +QR+ IAR ++ PR++ +DE T LD S R+
Sbjct: 145 -IDDLPT-----------TFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL-- 190
Query: 564 EALD--RVMINR---TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYN 617
LD R ++ VIV+H L++ R A+ + V++QG++VE G ++L++P Y
Sbjct: 191 --LDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVLDDPQHPYT 248
Query: 618 RL 619
+L
Sbjct: 249 QL 250
|
Length = 258 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 2e-15
Identities = 60/215 (27%), Positives = 107/215 (49%), Gaps = 22/215 (10%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V L + G+ L+G +G+GK+T + +L P +G I+L G + + + RQ
Sbjct: 22 VVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPS-RARHARQ 80
Query: 1088 QMGVVSQEPVLFSD-TIRANIAEMANANGFISG--------------LQEGYDTLVGERG 1132
++GVV Q L D T+R N+ G + L+ D VGE
Sbjct: 81 RVGVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAKLENKADAKVGE-- 138
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAH 1191
LSGG K+R+ +ARA+V +P +L+LDE T+ LD ++ ++ + L ++ +T L+ H
Sbjct: 139 --LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTH 196
Query: 1192 RLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG 1225
+ + + V+ +G + +G+ +LI ++ G
Sbjct: 197 FMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 2e-15
Identities = 63/215 (29%), Positives = 105/215 (48%), Gaps = 23/215 (10%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK-LQ---VKW 1084
RD T+P G ALVG +GSGKST+ L F +SG I++ G ++ LQ V +
Sbjct: 23 LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQALQKNLVAY 82
Query: 1085 LRQQMGVVSQEPVLFSDTI--------------RANIAEMANANGFISGLQEGYDTLVGE 1130
+ Q V PVL D + + ++ A + E +GE
Sbjct: 83 VPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEFRHRQIGE 142
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVV 1189
LSGGQK+RV +ARAI ++ +++LLDE + +D+++E + L ++ + +T LV
Sbjct: 143 ----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVS 198
Query: 1190 AHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
H L ++ V+ +G ++ G E+ + +N
Sbjct: 199 THNLGSVTEFCDYTVMVKGTVLASGPTETTFTAEN 233
|
Length = 272 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 80.3 bits (198), Expect = 3e-15
Identities = 71/253 (28%), Positives = 117/253 (46%), Gaps = 37/253 (14%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
V+ L ++F + I R+L ++ G+T+A+VGESGSGKS L R + + G +
Sbjct: 15 VENLNIAFMQ-EQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLV 73
Query: 1071 TLDGVEIQKL--QVKWLRQQ------------MGVVSQEPVLFSD---TIRANIAE---- 1109
D + +++ QV L +Q M ++ QEP+ + T+ IAE
Sbjct: 74 QCDKMLLRRRSRQVIELSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRL 133
Query: 1110 ---------MANANGFISGLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159
M A + ++ T++ QLSGG +QRV IA A+ P +L+ D
Sbjct: 134 HQGASREEAMVEAKRMLDQVRIPEAQTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIAD 193
Query: 1160 EATSALDIESE-RVVQ--DALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
E T+ALD+ + +++Q L + M + + H + + A + V+ QG VE GS
Sbjct: 194 EPTTALDVTIQAQILQLIKVLQKEM-SMGVIFITHDMGVVAEIADRVLVMYQGEAVETGS 252
Query: 1216 HESLISTKNGIYT 1228
E + YT
Sbjct: 253 VEQIFHAPQHPYT 265
|
Length = 623 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 76.0 bits (187), Expect = 3e-15
Identities = 62/209 (29%), Positives = 102/209 (48%), Gaps = 36/209 (17%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
L +V+FS I G + A+VG+SGSGKST++ L+ P +G+V+
Sbjct: 25 LHNVSFS----------------IGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIF 68
Query: 447 DGVNLKEF----QLKWIREKIGLVSQEPVLLSS-SIRDNIAY----GKTHATKEEIQAAA 497
+G + + + + +K+G + Q LL + +N+A GK E A
Sbjct: 69 NGQPMSKLSSAAKAELRNQKLGFIYQFHHLLPDFTALENVAMPLLIGKK-KPAEINSRAL 127
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E A GL+ +LSGG++QRVAIARA++ +PR++L DE T LD+
Sbjct: 128 EMLAAV--------GLEHRANHRPSELSGGERQRVAIARALVNNPRLVLADEPTGNLDAR 179
Query: 558 SGRMVQEALDRVMINRTT--VIVSHRLSL 584
+ + + L + + T ++V+H L L
Sbjct: 180 NADSIFQLLGELNRLQGTAFLVVTHDLQL 208
|
Length = 233 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 3e-15
Identities = 44/207 (21%), Positives = 86/207 (41%), Gaps = 37/207 (17%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
EV+ + F T D+ ++ G+ L+G +G+GK+T I ++ P SG
Sbjct: 2 EVENVTKRFGRVT-----ALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGE 56
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT-------------------IRANIAEM 1110
+ DG + R ++G + +E L+ R I E
Sbjct: 57 VLFDGKPLDIAA----RNRIGYLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEW 112
Query: 1111 ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
+S +R +LS G +Q+V A++ +P++L+LDE S LD +
Sbjct: 113 LERLE-LSEYAN-------KRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLDPVNV 164
Query: 1171 RVVQDALDQVMVDRTTLV-VAHRLSTI 1196
+++D + ++ T++ H++ +
Sbjct: 165 ELLKDVIRELARAGKTVILSTHQMELV 191
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 3e-15
Identities = 69/254 (27%), Positives = 118/254 (46%), Gaps = 47/254 (18%)
Query: 988 IDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGE 1047
+ +SK Y R G + L+ FK R +E + + TI G+ + +G
Sbjct: 3 VSNLSKS----Y--RVYSKEPGLIGSLKSLFKRKYR-EVEALKGISFTIEKGEIVGFIGP 55
Query: 1048 SGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV----SQ--------- 1094
+G+GK+T + +L P+SG + + G+ K + K+LR+ +GVV +Q
Sbjct: 56 NGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLRR-IGVVFGQKTQLWWDLPVID 114
Query: 1095 -----------EPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
P F ++E+ + L+E DT V R QLS GQ+ R
Sbjct: 115 SFYLLAAIYDLPPARFKKR-LDELSELLD-------LEELLDTPV--R--QLSLGQRMRA 162
Query: 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTI-KNAH 1200
IA A++ EP+IL LDE T LD+ ++ +++ L + +R T L+ +H + I A
Sbjct: 163 EIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222
Query: 1201 LIAVVSQGMIVEKG 1214
+ V+ +G ++ G
Sbjct: 223 RVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (190), Expect = 4e-15
Identities = 65/216 (30%), Positives = 104/216 (48%), Gaps = 25/216 (11%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ----KLQVKWLR 1086
++ + G +ALVG +GSGKST++ PSSG IT+ G I +K LR
Sbjct: 25 NISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLKKLR 84
Query: 1087 QQMGVVSQ--EPVLFSDTIRANIAEMANANGFIS--------------GLQEGYDTLVGE 1130
+++ +V Q E LF +T+ ++ GF GL E L+ +
Sbjct: 85 KKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKVGLSE---DLISK 141
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES-ERVVQDALDQVMVDRTTLVV 1189
+LSGGQ +RVAIA + EP+IL LDE + LD E + ++Q D T ++V
Sbjct: 142 SPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILV 201
Query: 1190 AHRLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKN 1224
H + + + A + V+ G +++ S + + S K
Sbjct: 202 THNMDDVAEYADDVLVLEHGKLIKHASPKEIFSDKE 237
|
Length = 287 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 4e-15
Identities = 57/188 (30%), Positives = 93/188 (49%), Gaps = 24/188 (12%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQKLQVK 1083
+++ L+IP + A++G SG GKST I L +G + +G I K +V
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVD 87
Query: 1084 W--LRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQ----------------EGYD 1125
LR+ +G+V Q+ F +I N+A +G + + E D
Sbjct: 88 LVELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKD 147
Query: 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185
L + + LSGGQ+QR+ IARA+ P +LL+DE TSALD S R +++ + ++ T
Sbjct: 148 RL-HTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYT 206
Query: 1186 TLVVAHRL 1193
++V H +
Sbjct: 207 IVIVTHNM 214
|
Length = 259 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.0 bits (193), Expect = 4e-15
Identities = 51/160 (31%), Positives = 87/160 (54%), Gaps = 25/160 (15%)
Query: 1031 DLCLTIP---PGKTI-ALVGESGSGKSTVISLLQRFYDPSSGHITLDG---VEI-QKLQV 1082
DLCLT+ P + I A+ G SG+GK+++I+ + P G I L+G + + + +
Sbjct: 12 DLCLTVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICL 71
Query: 1083 KWLRQQMGVVSQEPVLFSD-TIRANIAE-MANANGFISGLQEGYDTLVGERGVQ------ 1134
++++G V Q+ LF +R N+ MA + +D +V G++
Sbjct: 72 PPEKRRIGYVFQDARLFPHYKVRGNLRYGMAKSM------VAQFDKIVALLGIEPLLDRY 125
Query: 1135 ---LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER 1171
LSGG+KQRVAI RA++ P++LL+DE ++LD+ +R
Sbjct: 126 PGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKR 165
|
Length = 352 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 67/228 (29%), Positives = 112/228 (49%), Gaps = 28/228 (12%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEV---LIDGVNLKEFQL------KWIREKI 463
G + +VG SGSGK+T++ I P AG V + DG + + + +R +
Sbjct: 32 GEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMSEAERRRLLRTEW 91
Query: 464 GLVSQEP---VLLSSSIRDNI-----AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT 515
G V Q P + + S NI A G H I+A A +++ + LD
Sbjct: 92 GFVHQNPRDGLRMQVSAGGNIGERLMAIGARHYG--NIRAEA-----QDWLEEVEIDLD- 143
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQEALDRVM-INR 573
+ + SGG +QR+ IAR ++ PR++ +DE T LD S R++ V +
Sbjct: 144 RIDDLPRTFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGL 203
Query: 574 TTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
VIV+H L++ R A+ + V++QG++VE G +L++P+ Y +L+
Sbjct: 204 AVVIVTHDLAVARLLADRLMVMKQGQVVESGLTDRVLDDPHHPYTQLL 251
|
Length = 258 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 77.1 bits (189), Expect = 4e-15
Identities = 62/229 (27%), Positives = 118/229 (51%), Gaps = 27/229 (11%)
Query: 1011 VQFLRVSFKY-PTRPHI-EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
++F +V++ Y P P D+ L + G AL+G +GSGKST++ L P+ G
Sbjct: 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEG 61
Query: 1069 HITLDGVEI----QKLQVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANGFISGLQE 1122
+T+ + + ++ ++K +R+++GVV Q P LF +T+ ++A N I +E
Sbjct: 62 KVTVGDIVVSSTSKQKEIKPVRKKVGVVFQFPESQLFEETVLKDVA-FGPQNFGIP--KE 118
Query: 1123 GYDTLVGER--------------GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
+ + E+ +LSGGQ +RVAIA + EP++L+LDE T+ LD +
Sbjct: 119 KAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPK 178
Query: 1169 SERVVQDALDQV-MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ + + + +T ++V H + + + A + ++ +G I+ G+
Sbjct: 179 ARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227
|
Length = 288 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 5e-15
Identities = 51/213 (23%), Positives = 100/213 (46%), Gaps = 17/213 (7%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
++G + G + +G +G+GK+T I ++ P +G + G ++ + + +R
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRS 67
Query: 463 IGLVSQEPVL---LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIK--NLPQGLDTNV 517
IG+V Q + L+ R+N+ + + A ++ L + D V
Sbjct: 68 IGIVPQYASVDEDLTG--RENL---EMMGRLYGLPKDEAEERAEELLELFELGEAADRPV 122
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI 577
G SGG ++R+ IA ++I P +L LDE T+ LD + R + + + + T++
Sbjct: 123 G----TYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDYIRALKEEGVTIL 178
Query: 578 V-SHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
+ +H + + IA+I G+I+ +GT EL
Sbjct: 179 LTTHYMEEADKLCDRIAIIDHGRIIAEGTPEEL 211
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.7 bits (188), Expect = 5e-15
Identities = 59/217 (27%), Positives = 103/217 (47%), Gaps = 22/217 (10%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-----ITLDGVEIQKLQ- 1081
V + + P +L+G +GSGK+T + L R D SG+ + L G I +
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD 95
Query: 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS---------------GLQEGYDT 1126
V R+++G++ Q P F +I N+ A+ + GL +
Sbjct: 96 VLEFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKD 155
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
+ + +LSGGQ+Q + +AR + P++LLLDE TSALD + +++ + + T
Sbjct: 156 RLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTV 215
Query: 1187 LVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
++V H L+ + + A+ G +VE+G E L S+
Sbjct: 216 IIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSS 252
|
Length = 276 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 80.4 bits (198), Expect = 5e-15
Identities = 62/229 (27%), Positives = 114/229 (49%), Gaps = 27/229 (11%)
Query: 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS 474
I A +G +G+GK+T +S++ P +G VL+ G ++ E L +R+ +G+ Q +L
Sbjct: 958 ITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI-ETNLDAVRQSLGMCPQHNILFH 1016
Query: 475 S-SIRDNIAY-----GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528
++ ++I + G++ EE Q EA GL E LSGG
Sbjct: 1017 HLTVAEHILFYAQLKGRS---WEEAQLEMEAMLED-------TGLHHKRNEEAQDLSGGM 1066
Query: 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNA 588
++++++A A + D ++++LDE TS +D S R + + L + RT ++ +H + A
Sbjct: 1067 QRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMD---EA 1123
Query: 589 NI----IAVIQQGKIVEKGTHSELLENPYGA--YNRLIRLQETCKESEK 631
++ IA+I QG++ GT L+N +G Y L+R + +
Sbjct: 1124 DLLGDRIAIISQGRLYCSGT-PLFLKNCFGTGFYLTLVRKMKNIQSQRG 1171
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 5e-15
Identities = 64/221 (28%), Positives = 104/221 (47%), Gaps = 22/221 (9%)
Query: 991 VSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGES 1048
V+K +SE + L N E Q + SF + IE V R+L L I PG +A+VG+S
Sbjct: 363 VTKTFASELDIKGLPN---EFQDILESFGV-RQRVIERYVLRNLNLEIKPGDVVAVVGQS 418
Query: 1049 GSGKSTVISLLQRF--------YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100
G+GK+T++ ++ Y P SG + + + L + G V+ L S
Sbjct: 419 GAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNTVSALIPGEYEPEFGEVTILEHLRS 478
Query: 1101 DTIRANIA-EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159
T N A E+ N +GL + L + +LS GQK+R +A+ + + P +LL+D
Sbjct: 479 KTGDLNAAVEILNR----AGLSDAV--LYRRKFSELSTGQKERAKLAKLLAERPNVLLID 532
Query: 1160 EATSALDIESERVVQDALDQVMVDRT-TLVVAHRLSTIKNA 1199
E + LD + V + ++ + TL+V + NA
Sbjct: 533 EFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNA 573
|
Length = 593 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 78.3 bits (193), Expect = 6e-15
Identities = 51/213 (23%), Positives = 97/213 (45%), Gaps = 19/213 (8%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V + L++ G + LVG +G+GK+T++ + P++G + + G +++ L + +
Sbjct: 18 VLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASR 77
Query: 1088 QMGVVSQEPVL-FSDTIRANIAEMANA--NGFISGLQEGYDTLVGE------------RG 1132
++ V Q+ L F +R + EM E V R
Sbjct: 78 RVASVPQDTSLSFEFDVRQ-VVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRP 136
Query: 1133 V-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE-RVVQDALDQVMVDRTTLVVA 1190
V LSGG++QRV +ARA+ + +LLLDE T++LDI + R ++ V +T +
Sbjct: 137 VTSLSGGERQRVLLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAI 196
Query: 1191 HRLS-TIKNAHLIAVVSQGMIVEKGSHESLIST 1222
H L + + +++ G + G +++
Sbjct: 197 HDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229
|
Length = 402 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (186), Expect = 7e-15
Identities = 63/211 (29%), Positives = 102/211 (48%), Gaps = 26/211 (12%)
Query: 1040 KTIALVGESGSGKSTVISLLQRFYD--PSS---GHITL--DGVEIQKLQVK--WLRQQMG 1090
+ AL+G SG GKST + R +D P + G I L D V I +V +R ++
Sbjct: 43 QVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSPEVDPIEVRMRIS 102
Query: 1091 VVSQEPVLFSDTIRANIAEMANANGFI---------------SGLQEGYDTLVGERGVQL 1135
+V Q+P F +I N+A G + L + +G+ L
Sbjct: 103 MVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNL 162
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL-S 1194
SGGQ+QR+ IARA+ +P+ILL DE TSALD + +++ + + T L+V H +
Sbjct: 163 SGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQ 222
Query: 1195 TIKNAHLIAVVSQGMIVEKGSHESL-ISTKN 1224
+ + A + G ++E G+ +++ I KN
Sbjct: 223 AARVSDYTAYMYMGELIEFGATDTIFIKPKN 253
|
Length = 265 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 8e-15
Identities = 54/174 (31%), Positives = 82/174 (47%), Gaps = 34/174 (19%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+ + YP E + + G+ +AL+G +G+GKST+ P+SG + + G
Sbjct: 7 LKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGE 64
Query: 1076 EIQKLQVKWL---RQQMGVVSQEP--VLFSDTIRANIA------------------EMAN 1112
I K K L R+ +G+V Q P LF+ T+ ++A E
Sbjct: 65 PI-KYDKKSLLEVRKTVGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALK 123
Query: 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
A G EG++ LSGGQK+RVAIA + +P+I++LDE TS LD
Sbjct: 124 AVGM-----EGFENKPPH---HLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
|
Length = 275 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 9e-15
Identities = 66/249 (26%), Positives = 117/249 (46%), Gaps = 29/249 (11%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ VS Y + V L T+ G+ L+G +G+GKST+ ++ P +G I
Sbjct: 42 IDLAGVSKSYGDKA---VVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKI 98
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF--------ISGLQ 1121
T+ GV + + + R ++GVV Q L + T+R N+ G I L
Sbjct: 99 TVLGVPVPA-RARLARARIGVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLL 157
Query: 1122 E--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
E ++ R LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++ + L
Sbjct: 158 EFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRS 217
Query: 1180 VMV-DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG-----IY----- 1227
++ +T L+ H + + + V+ G + +G +LI G IY
Sbjct: 218 LLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDEHIGCQVIEIYGGDPH 277
Query: 1228 --TSLIEPH 1234
+SL++P+
Sbjct: 278 ELSSLVKPY 286
|
Length = 340 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 76.4 bits (188), Expect = 9e-15
Identities = 62/236 (26%), Positives = 120/236 (50%), Gaps = 18/236 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+ ++V Y D+ +++G + G L+G +G+GK+T + ++ P AG +
Sbjct: 8 IDFRNVEKRYG---DKLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQ----EPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
+ G + + + R+++G+V Q +P ++R+N+ + A A
Sbjct: 65 SLCGEPVPS-RARHARQRVGVVPQFDNLDP---DFTVRENLLVFGRYFGLSAAAARALVP 120
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
F K L D VGE LSGG K+R+ +ARA++ DP +L+LDE T+ LD ++
Sbjct: 121 PLLEFAK-LENKADAKVGE----LSGGMKRRLTLARALVNDPDVLVLDEPTTGLDPQARH 175
Query: 561 MVQEALDRVMIN-RTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENPYG 614
++ E L ++ +T ++ +H + R + + VI++G+ + +G L+E+ G
Sbjct: 176 LMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIESEIG 231
|
Length = 306 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 75.9 bits (187), Expect = 1e-14
Identities = 67/248 (27%), Positives = 113/248 (45%), Gaps = 48/248 (19%)
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-------- 1070
K PT ++ ++ + I G+ IA++G++GSGK+T I L P +G I
Sbjct: 15 KLPT--ELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEK 72
Query: 1071 ----------TLDGVEIQKL------QVKWLRQQMGVVSQ--EPVLFSDTIRANIA---- 1108
L+ + IQK ++K +R+++GVV Q E LF TI +I
Sbjct: 73 NKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPV 132
Query: 1109 ----------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158
+ A + GL E Y + +LSGGQK+RVA+A + EP L+
Sbjct: 133 SMGVSKEEAKKRAAKYIELVGLDESY---LQRSPFELSGGQKRRVALAGILAMEPDFLVF 189
Query: 1159 DEATSALDIESERVVQDALDQVMVD-RTTLVVAHRL-STIKNAHLIAVVSQGMIVEKG-S 1215
DE T+ LD + + + + D + +T ++V H L + ++ G I++ G +
Sbjct: 190 DEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFKDGKIIKDGDT 249
Query: 1216 HESLISTK 1223
++ L K
Sbjct: 250 YDILSDNK 257
|
Length = 305 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 1e-14
Identities = 63/198 (31%), Positives = 94/198 (47%), Gaps = 28/198 (14%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL---KEFQLKW 458
IL G L++ G AL+G SGSGKST+++++ D +GEV + G L E
Sbjct: 25 ILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAK 84
Query: 459 IREK-IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA------EAANASHFIKNLPQ 511
+R K +G V Q +L+ T E ++ A + + L Q
Sbjct: 85 LRAKHVGFVFQSFMLIP-----------TLNALENVELPALLRGESSRQSRNGAKALLEQ 133
Query: 512 -GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570
GL + QLSGG++QRVA+ARA P +L DE T LD ++G + + L
Sbjct: 134 LGLGKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLL--FS 191
Query: 571 INR----TTVIVSHRLSL 584
+NR T ++V+H L L
Sbjct: 192 LNREHGTTLILVTHDLQL 209
|
Length = 228 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 1e-14
Identities = 59/221 (26%), Positives = 103/221 (46%), Gaps = 15/221 (6%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV----NLKEFQLKW 458
LN + G + L+G +G+GK+T++ +I PQ GEVL DG L E ++
Sbjct: 21 LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEHRI-- 78
Query: 459 IREKIGLVSQEP-VLLSSSIRDN--IAYGKTH---ATKEEIQAAAEAANASHFIKNLPQG 512
R IG Q+P V + ++R+N +A + A+ A E + + G
Sbjct: 79 ARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATI--G 136
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572
L LS GQKQ + I + +DP++LLLDE + + E L +
Sbjct: 137 LGDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGK 196
Query: 573 RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ ++V H + +R A+ + V+ +G ++ +G+ E+ +P
Sbjct: 197 HSILVVEHDMGFVREIADKVTVLHEGSVLAEGSLDEVQNDP 237
|
Length = 249 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-14
Identities = 56/186 (30%), Positives = 88/186 (47%), Gaps = 30/186 (16%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+L + PG+ + + GESG+GK++++ L + SG I++
Sbjct: 410 SELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISM-------------PADS 456
Query: 1090 GV--VSQEPVLFSDTIRANIAEMANANGFIS-----------GLQEGYDTLVGER--GVQ 1134
+ + Q P L T+R + NA S GL + + L E
Sbjct: 457 ALLFLPQRPYLPQGTLREALC-YPNAAPDFSDAELVAVLHKVGLGDLAERLDEEDRWDRV 515
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194
LSGG++QR+A AR ++ +PK + LDEATSALD E+E + L + + D T + V HR
Sbjct: 516 LSGGEQQRLAFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHR-P 574
Query: 1195 TIKNAH 1200
T+ N H
Sbjct: 575 TLWNFH 580
|
Length = 604 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 55/204 (26%), Positives = 111/204 (54%), Gaps = 13/204 (6%)
Query: 417 ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSS 476
A++G +GSGKST+ ++ +P +GE+LID L + ++I ++ Q+P S+S
Sbjct: 43 AIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYSYRSQRIRMIFQDP---STS 99
Query: 477 IRDNIAYGKTHATKEEIQAAAEA-ANASHFIKNLPQ-GLDTN-VGEHGIQLSGGQKQRVA 533
+ + + E I+ L Q GL + + L+ GQKQR+
Sbjct: 100 LNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLG 159
Query: 534 IARAMIKDPRILLLDEATSALD----SESGRMVQEALDRVMINRTTVIVSHRLSLIRN-A 588
+ARA+I P++++ DEA ++LD S+ ++ E ++ I + + V+ L ++++ +
Sbjct: 160 LARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGI--SYIYVTQHLGMMKHIS 217
Query: 589 NIIAVIQQGKIVEKGTHSELLENP 612
+ + V+ QG++VE+G+ +++L +P
Sbjct: 218 DQVLVMHQGEVVERGSTADVLASP 241
|
Length = 267 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 52/214 (24%), Positives = 103/214 (48%), Gaps = 18/214 (8%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN-LKEFQLKWIRE 461
+ G + G I L+G +G+GK+T I ++ P +G + G + ++E + +R
Sbjct: 16 VRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE--PREVRR 73
Query: 462 KIGLVSQEPVL---LSSSIRDNIA-YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV 517
+IG+V Q+ + L+ +N+ + + + F+ L + D V
Sbjct: 74 RIGIVFQDLSVDDELTG--WENLYIHARLYGVPGAE-RRERIDELLDFV-GLLEAADRLV 129
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTT 575
+ SGG ++R+ IAR+++ P +L LDE T LD ++ V E ++++ T
Sbjct: 130 KTY----SGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTI 185
Query: 576 VIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
++ +H + + +A+I G+I+ +GT EL
Sbjct: 186 LLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 2e-14
Identities = 63/230 (27%), Positives = 110/230 (47%), Gaps = 21/230 (9%)
Query: 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP----QAGEVLIDGV 449
A+P +++G L + G + ALVG SGSGKS + AG VL+DG
Sbjct: 13 QAAQP---LVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGK 69
Query: 450 NLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
+ L+ KI + Q P + + + THA +E A + A+ + L
Sbjct: 70 PVAPCALRGR--KIATIMQNPRSAFNPLH-TMH---THA-RETCLALGKPADDATLTAAL 122
Query: 510 PQ-GLD---TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
GL+ + + ++SGG QR+ IA A++ + ++ DE T+ LD + + +
Sbjct: 123 EAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDL 182
Query: 566 LDRVMINRT--TVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
L+ ++ R ++V+H + ++ R A+ +AV+ G+IVE+G L P
Sbjct: 183 LESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNAP 232
|
Length = 254 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.3 bits (182), Expect = 2e-14
Identities = 66/214 (30%), Positives = 102/214 (47%), Gaps = 30/214 (14%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFY--DPSSG-HITLDGVEIQ------------ 1078
L I G+ +AL+G SGSGKST++ L D S+G HI L G +Q
Sbjct: 25 LNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARDIRKS 84
Query: 1079 KLQVKWLRQQMGVVSQEPVL------------FSDTIRANIAEMANANGFISGLQEGYDT 1126
+ ++ QQ +V++ VL F T + + + G
Sbjct: 85 RANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVH 144
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV-MVDRT 1185
+R LSGGQ+QRVAIARA++++ K++L DE ++LD ES R+V D L + D
Sbjct: 145 FAHQRVSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGI 204
Query: 1186 TLVVA-HRLS-TIKNAHLIAVVSQGMIVEKGSHE 1217
T+VV H++ ++ I + QG + GS +
Sbjct: 205 TVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQ 238
|
Length = 262 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 3e-14
Identities = 69/251 (27%), Positives = 116/251 (46%), Gaps = 29/251 (11%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDL---CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
++ VS+ Y + E F+ L LT K ++G +GSGKST+I L
Sbjct: 5 KDIILDNVSYTYAKKTPFE-FKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIIS 63
Query: 1066 SSGHITLDGVEI----QKL-QVKWLRQQMGVVSQEP--VLFSDTIRANIAEMANANGFIS 1118
+G + I +K+ +VK LR+++G+V Q P LF +TI +IA G
Sbjct: 64 ETGQTIVGDYAIPANLKKIKEVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLG--E 121
Query: 1119 GLQEGYDTL-------------VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
QE Y + V +LSGGQK+RVA+A I + L+LDE T L
Sbjct: 122 NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGL 181
Query: 1166 DIESERVVQDALDQVMVD--RTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLIST 1222
D + E + +++ + + ++V H + + + A + V+ +G ++ GS + S
Sbjct: 182 DPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241
Query: 1223 KNGIYTSLIEP 1233
+ + I+P
Sbjct: 242 QELLTKIEIDP 252
|
Length = 289 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 74.6 bits (183), Expect = 3e-14
Identities = 64/236 (27%), Positives = 107/236 (45%), Gaps = 34/236 (14%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
V DL TI G+ L+G +G+GKST+ +L P G IT+ G + + + R
Sbjct: 19 VVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPS-RARLARV 77
Query: 1088 QMGVVSQEPVLFSD-TIRANIAEMANANGF--------------ISGLQEGYDTLVGERG 1132
+GVV Q L + T+R N+ G + L+ D V
Sbjct: 78 AIGVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEFARLESKADVRVA--- 134
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAH 1191
LSGG K+R+ +ARA++ +P++L+LDE T+ LD + ++ + L ++ +T L+ H
Sbjct: 135 -LLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTH 193
Query: 1192 RLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG-----IY-------TSLIEPH 1234
+ + + V+ G + +G +LI + G IY LI P+
Sbjct: 194 FMEEAERLCDRLCVLESGRKIAEGRPHALIDEQIGCNVIEIYGGDPDELRELIRPY 249
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 3e-14
Identities = 48/211 (22%), Positives = 89/211 (42%), Gaps = 22/211 (10%)
Query: 379 DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438
D+ I L++++ P + +L+ + G + G SG+GK++++ + +
Sbjct: 387 DNADHGITLENLSLRTPDG--QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWP 444
Query: 439 PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA--TKEEIQAA 496
+G + + + + Q P L ++R+ + Y + E+ A
Sbjct: 445 WGSGRISMPA-----------DSALLFLPQRPYLPQGTLREALCYPNAAPDFSDAELVAV 493
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
+ L LSGG++QR+A AR ++ P+ + LDEATSALD
Sbjct: 494 LHKVGLGDLAERL-----DEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDE 548
Query: 557 ESGRMVQEALDRVMINRTTVI-VSHRLSLIR 586
E+ + + L + TVI V HR +L
Sbjct: 549 ETEDRLYQLLKE-ELPDATVISVGHRPTLWN 578
|
Length = 604 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 73.0 bits (180), Expect = 4e-14
Identities = 61/228 (26%), Positives = 96/228 (42%), Gaps = 52/228 (22%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
LKDV+F +P G L+G +G+GKST++ L+ Y P +G V +
Sbjct: 38 LKDVSFE----------------VPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTV 81
Query: 447 DGVNLKEFQLKWIREKIGL-VSQEPVLLSSSIRDNI-----AYGKTHATKEEIQAAAEAA 500
G ++ + +GL P L + R+NI G +++EI
Sbjct: 82 RG------RVSSL---LGLGGGFNPEL---TGRENIYLNGRLLGL---SRKEIDE----- 121
Query: 501 NASHFIKN---LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
I L +D V S G K R+A A A +P ILL+DE + D+
Sbjct: 122 -KIDEIIEFSELGDFIDLPVKT----YSSGMKARLAFAIATALEPDILLIDEVLAVGDAA 176
Query: 558 SGRMVQEAL-DRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603
Q L + + +T ++VSH S I+ + V+++GKI G
Sbjct: 177 FQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFDG 224
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 73.1 bits (180), Expect = 4e-14
Identities = 60/228 (26%), Positives = 106/228 (46%), Gaps = 35/228 (15%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAGEVLIDGVNLKEFQL 456
D++IL G L + G I A++G +GSGKST+ I Y+ +G +L G +L E +
Sbjct: 12 DKEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEP 71
Query: 457 KWI-REKIGLVSQEP-----VLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLP 510
R + L Q P V +R + ++ +E + F+K L
Sbjct: 72 DERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLL-------DFLKLLK 124
Query: 511 QGLDT------------NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
L N G SGG+K+R I + + +P++ +LDE S LD ++
Sbjct: 125 AKLALLGMDEEFLNRSVNEG-----FSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDA 179
Query: 559 GRMVQEALDRVMI-NRTTVIVSHRLSLIR--NANIIAVIQQGKIVEKG 603
++V E ++R+ +R+ +I++H L+ + + V+ G+IV+ G
Sbjct: 180 LKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 72.7 bits (179), Expect = 6e-14
Identities = 61/218 (27%), Positives = 107/218 (49%), Gaps = 28/218 (12%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGVEIQKLQVKW 1084
E+ + + LT+ G+ A++G +GSGKST+ + Y+ +SG I G ++ +L+
Sbjct: 14 EILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD- 72
Query: 1085 LRQQMGVV--SQEP-----VLFSDTIRANIAEMANANG--------FISGLQE-----GY 1124
R + G+ Q P V + +R+ + +A G F+ L+ G
Sbjct: 73 ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGM 132
Query: 1125 DTLVGERGVQ--LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
D R V SGG+K+R I + + EPK+ +LDE S LDI++ ++V + ++++
Sbjct: 133 DEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLRE 192
Query: 1183 -DRTTLVVAH--RLSTIKNAHLIAVVSQGMIVEKGSHE 1217
DR+ L++ H RL + V+ G IV+ G E
Sbjct: 193 PDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 6e-14
Identities = 61/238 (25%), Positives = 103/238 (43%), Gaps = 38/238 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
LK + + L I G ++G +G+GKST++ LI Y P +G+V
Sbjct: 25 KRLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKV 84
Query: 445 LIDGVNLKEFQLKWIREKIGL-VSQEPVLLSSSIRDNI-AYGKTHA-TKEEIQAAAEA-- 499
+ G ++ + I L +P L + R+NI G T++EI +
Sbjct: 85 KVTG------KVAPL---IELGAGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEII 132
Query: 500 --ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
A FI + P + T S G R+A + A +P ILLLDE + D+
Sbjct: 133 EFAELGDFI-DQP--VKT--------YSSGMYARLAFSVATHVEPDILLLDEVLAVGDA- 180
Query: 558 SGRMVQEALDRVM----INRTTVIVSHRLSLIRNA-NIIAVIQQGKIVEKGTHSELLE 610
++ L+R+ N+T V+VSH L I+ + ++ G+I +G+ E++
Sbjct: 181 --AFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVIP 236
|
Length = 249 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 72.6 bits (179), Expect = 7e-14
Identities = 57/225 (25%), Positives = 96/225 (42%), Gaps = 31/225 (13%)
Query: 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071
+ ++ +D+ I G+ + ++G +G+GKST++ L+ Y P+SG +
Sbjct: 26 RLKGLAKGGRKVAEFWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVK 85
Query: 1072 LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI-----------AEMANANGFI--- 1117
+ G +V L ++G +P L T R NI E+ I
Sbjct: 86 VTG------KVAPL-IELG-AGFDPEL---TGRENIYLRGLILGLTRKEIDEKVDEIIEF 134
Query: 1118 SGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
+ L + D V S G R+A + A EP ILLLDE + D + + L
Sbjct: 135 AELGDFIDQPVK----TYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKCLERL 190
Query: 1178 DQ-VMVDRTTLVVAHRLSTIKNA-HLIAVVSQGMIVEKGSHESLI 1220
++ V ++T ++V+H L IK + G I +GS E +I
Sbjct: 191 NELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSPEEVI 235
|
Length = 249 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 8e-14
Identities = 64/272 (23%), Positives = 121/272 (44%), Gaps = 60/272 (22%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAG 442
IE+K++ + +++L I G + ++G SG+GKS ++ +++ Y+P +G
Sbjct: 1 IEVKNLTKKFD---GKEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSG 57
Query: 443 EVL---------------------------------IDGVNLKEFQLKWIREKIGLVSQE 469
++ +D NL + + IR++I ++ Q
Sbjct: 58 RIIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQR 117
Query: 470 PVLL--SSSIRDNIAYGKTHA---TKEEIQAAA---EAANASHFIKNLPQGLDTNVGEHG 521
L ++ DN+ KE + A E SH I ++ +
Sbjct: 118 TFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQLSHRITHIAR---------- 167
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--TTVIVS 579
LSGG+KQRV +AR + K+P + L DE T LD ++ ++V AL+ + + V+ S
Sbjct: 168 -DLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226
Query: 580 HRLSLIRNANIIAV-IQQGKIVEKGTHSELLE 610
H +I + + A+ ++ G+I E+GT E++
Sbjct: 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 9e-14
Identities = 57/204 (27%), Positives = 100/204 (49%), Gaps = 27/204 (13%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-----GHIT 1071
SF Y T+ +E + + I K A++G SG GKST + L R + S G +
Sbjct: 14 SFYYDTQKILE---GVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVE 70
Query: 1072 LDGVEI--QKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF-----ISGLQEG- 1123
I +++ + LR+Q+ +V +P LF ++ N+A G+ I + E
Sbjct: 71 FFNQNIYERRVNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESA 130
Query: 1124 ------YDTL---VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
+D + + + + LSGGQ+QR+ IARA+ +PK+LL+DE LD + V+
Sbjct: 131 LKDADLWDEIKHKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVE 190
Query: 1175 DALDQVMV--DRTTLVVAHRLSTI 1196
+ + + + T ++V+H L +
Sbjct: 191 SLIQSLRLRSELTMVIVSHNLHQV 214
|
Length = 261 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 1e-13
Identities = 62/221 (28%), Positives = 104/221 (47%), Gaps = 24/221 (10%)
Query: 1016 VSFKYPTRPHIE---VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072
VS+KY + D+ L + G+ + ++G +GSGKST+ + PS G + +
Sbjct: 10 VSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYV 69
Query: 1073 DGVEIQKLQVKW-LRQQMGVVSQEPVLFSDTIRANIAEMANANG------FISGLQEGYD 1125
DG++ + W +R + G+V Q P + I A I E A G ++E D
Sbjct: 70 DGLDTSDEENLWDIRNKAGMVFQNP---DNQIVATIVEEDVAFGPENLGIPPEEIRERVD 126
Query: 1126 TLVGERGVQ---------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
+ + G+ LSGGQKQRVAIA + P+ ++ DE T+ LD R V +
Sbjct: 127 ESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPTAMLDPSGRREVVNT 186
Query: 1177 LDQVMVDR--TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
+ ++ T +++ H + A I V+ G +V +G+
Sbjct: 187 IKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGT 227
|
Length = 280 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 74.9 bits (185), Expect = 1e-13
Identities = 56/203 (27%), Positives = 101/203 (49%), Gaps = 33/203 (16%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK----WLRQQM 1089
L++ G+ AL+GE+G+GKST++ +L Y P SG I +DG +++++K +R +
Sbjct: 25 LSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDG---KEVRIKSPRDAIRLGI 81
Query: 1090 GVVSQEPVLF-SDTIRANIAEMANANGF------------ISGLQEGY------DTLVGE 1130
G+V Q +L + T+ NI + I L E Y D V +
Sbjct: 82 GMVHQHFMLVPTLTVAENII-LGLEPSKGGLIDRRQARARIKELSERYGLPVDPDAKVAD 140
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL-DIESERVVQDALDQVMVDRTTLVV 1189
LS G++QRV I +A+ + ++L+LDE T+ L E++ + + +T + +
Sbjct: 141 ----LSVGEQQRVEILKALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFI 196
Query: 1190 AHRLSTIKN-AHLIAVVSQGMIV 1211
H+L + A + V+ +G +V
Sbjct: 197 THKLKEVMAIADRVTVLRRGKVV 219
|
Length = 501 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 72.5 bits (178), Expect = 1e-13
Identities = 64/222 (28%), Positives = 105/222 (47%), Gaps = 37/222 (16%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VSF R +F ++ LT+P GK A++G SG GK+T++ L+ P G I DG
Sbjct: 13 VSFTRGNRC---IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGE 69
Query: 1076 EIQKLQVKWL---RQQMGVVSQEPVLFSD-TIRANIA----------EMANANGFISGLQ 1121
I + L R++M ++ Q LF+D + N+A + + L+
Sbjct: 70 NIPAMSRSRLYTVRKRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLE 129
Query: 1122 EGYDTLVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
VG RG +LSGG +R A+ARAI EP +++ DE D + V+
Sbjct: 130 A-----VGLRGAAKLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPITMGVLVK 184
Query: 1176 ALDQV--MVDRTTLVVAHR----LSTIKNAHLIA---VVSQG 1208
+ ++ + T +VV+H LS +A+++A +V+ G
Sbjct: 185 LISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226
|
Length = 269 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 75.4 bits (186), Expect = 1e-13
Identities = 55/188 (29%), Positives = 90/188 (47%), Gaps = 27/188 (14%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
I G+ I ++G +G GK+T + LL +G I D + L+V + Q +
Sbjct: 363 EIYDGEVIGILGPNGIGKTTFVKLL-------AGVIKPDEGSEEDLKVSYKPQYISPDYD 415
Query: 1095 EPVLFSDTIRANIAEMANANGFIS------GLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148
V D +R+ I ++ F + L++ + V E LSGG+ QRVAIA A
Sbjct: 416 GTV--EDLLRSAIRSAFGSSYFKTEIVKPLNLEDLLERPVDE----LSGGELQRVAIAAA 469
Query: 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNAHLIAVVS 1206
+ +E + LLDE ++ LD+E +V + + + + T LVV H + +I VS
Sbjct: 470 LSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIY------MIDYVS 523
Query: 1207 QGMIVEKG 1214
+IV +G
Sbjct: 524 DRLIVFEG 531
|
Length = 591 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.2 bits (175), Expect = 1e-13
Identities = 50/183 (27%), Positives = 82/183 (44%), Gaps = 42/183 (22%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---- 1083
+F DL T+ G+ + + G +G+GK+T++ +L P +G + G IQ ++
Sbjct: 17 LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRESYHQA 76
Query: 1084 --WLRQQMGVVSQ----EPVLF---------SDTIRANIAEMANANGFISGLQEGYDTLV 1128
+L Q G+ ++ E + F + TI +A GL D V
Sbjct: 77 LLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIWEALA--------QVGLAGLEDLPV 128
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
G QLS GQ++RVA+AR + + +LDE +ALD E ++ T L+
Sbjct: 129 G----QLSAGQQRRVALARLWLSPAPLWILDEPFTALDKEGVALL-----------TALM 173
Query: 1189 VAH 1191
AH
Sbjct: 174 AAH 176
|
Length = 209 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 1e-13
Identities = 57/229 (24%), Positives = 104/229 (45%), Gaps = 32/229 (13%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLKWI 459
LN L + G + ++G +G+GK+T++ +I P G VL G L E Q+
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQI--A 75
Query: 460 REKIGLVSQEP-VLLSSSIRDN--------------IAYGKTHATKEEIQAAAEAANASH 504
R IG Q+P V + ++ +N + + + K+ I+ E +
Sbjct: 76 RAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLAD 135
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
+ GL LS GQKQ + I +++DP++LLLDE + + E E
Sbjct: 136 E-ADRLAGL----------LSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTAE 184
Query: 565 ALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
L + + V+V H + +R+ A+ + V+ QG ++ +G+ ++ +P
Sbjct: 185 LLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQADP 233
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 72.8 bits (179), Expect = 2e-13
Identities = 66/262 (25%), Positives = 114/262 (43%), Gaps = 48/262 (18%)
Query: 1006 NVMGEVQFLRVSFK------YPTRPH--IEVFRDLCLTIPPGKTIALVGESGSGKSTVIS 1057
V+ EV L+V F + +P ++ + L + G+T+ +VGESG GKST
Sbjct: 6 KVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFAR 65
Query: 1058 LLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-----QM---------------GVVSQEPV 1097
+ + G + G ++ ++ R QM G + EP+
Sbjct: 66 AIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPL 125
Query: 1098 ------LFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151
L ++ + M G + L Y + SGGQ QR+ IARA++
Sbjct: 126 RTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPH-------EFSGGQCQRIGIARALIL 178
Query: 1152 EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHL---IAVVS 1206
EPK+++ DE SALD+ + V + L Q+ + + + +AH L+ +K H+ + V+
Sbjct: 179 EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVK--HISDRVLVMY 236
Query: 1207 QGMIVEKGSHESLISTKNGIYT 1228
G VE G+++ + YT
Sbjct: 237 LGHAVELGTYDEVYHNPLHPYT 258
|
Length = 331 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 3e-13
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 22/173 (12%)
Query: 1043 ALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEI--QKLQVKWLRQQMGVVSQE 1095
AL+G SG GKST + L R D G++ +G I + LR+++G+V Q
Sbjct: 37 ALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDILELRRKIGMVFQT 96
Query: 1096 PVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140
P F +I NI+ E+ + S L + + LSGGQ+
Sbjct: 97 PNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQ 156
Query: 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
QR+ IAR + EP ++L+DE TSALD S +++ + + T ++V H +
Sbjct: 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNM 209
|
Length = 254 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 3e-13
Identities = 57/212 (26%), Positives = 106/212 (50%), Gaps = 26/212 (12%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085
+EV + + T+ G+ AL+G +G+GKST++ ++ P SG + + G +L
Sbjct: 24 VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPA-K 82
Query: 1086 RQQMGV--VSQEPVLFSD-TIRANIA-EMANANGFISGLQEGYDTLVGERGVQLS----- 1136
Q+G+ V QEP+LF + +++ NI + + +++ L+ G QL
Sbjct: 83 AHQLGIYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQ----LLAALGCQLDLDSSA 138
Query: 1137 ----GGQKQRVAIARAIVKEPKILLLDEATSALD-IESERV---VQDALDQVMVDRTTLV 1188
+Q V I R ++++ +IL+LDE T++L E+ER+ +++ L Q +
Sbjct: 139 GSLEVADRQIVEILRGLMRDSRILILDEPTASLTPAETERLFSRIRELLAQ---GVGIVF 195
Query: 1189 VAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219
++H+L I+ A I+V+ G I G L
Sbjct: 196 ISHKLPEIRQLADRISVMRDGTIALSGKTADL 227
|
Length = 510 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 4e-13
Identities = 59/255 (23%), Positives = 105/255 (41%), Gaps = 34/255 (13%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR-------EK 462
IP G I +G +G+GKST + ++ P +G+V ++G + + +++R +K
Sbjct: 47 IPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRVNGKDPFRRREEYLRSIGLVMGQK 106
Query: 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
+ L P L S + I EI A + L L+ +
Sbjct: 107 LQLWWDLPALDSLEVLKLIY---------EIPDDEFAERLDFLTEIL--DLEGFLKWPVR 155
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIV--SH 580
+LS GQ+ R +A A++ P++L LDE T LD + ++E L R ++ +H
Sbjct: 156 KLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTH 215
Query: 581 RLS-LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL------------IRLQETCK 627
+ + + +I QG++V GT ++L E +G Y + L
Sbjct: 216 IFDDIATLCDRVLLIDQGQLVFDGTLAQLQEQ-FGPYKEFSVELKQAKSLSQLALLGDVT 274
Query: 628 ESEKSAVNNSDSDNQ 642
E + N S +
Sbjct: 275 IEEGLNIKNDVSREE 289
|
Length = 325 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 69.7 bits (171), Expect = 4e-13
Identities = 55/198 (27%), Positives = 99/198 (50%), Gaps = 25/198 (12%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
++ LT+P L+G +G+GKST++ ++ P+SG I DG W R+
Sbjct: 15 AVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHP-------WTRK 67
Query: 1088 QM---GVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVG------ERGVQLSG 1137
+ G + + P L+ + T R N+ G + +V ++ Q S
Sbjct: 68 DLHKIGSLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTGKKKAKQFSL 127
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALD---IESER-VVQDALDQVMVDRTTLVVAHRL 1193
G KQR+ IA A++ PK+L+LDE T+ LD I+ R +++ +Q + T ++ +H L
Sbjct: 128 GMKQRLGIAIALLNHPKLLILDEPTNGLDPIGIQELRELIRSFPEQGI---TVILSSHIL 184
Query: 1194 STIKN-AHLIAVVSQGMI 1210
S ++ A I ++S+G++
Sbjct: 185 SEVQQLADHIGIISEGVL 202
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 5e-13
Identities = 49/177 (27%), Positives = 84/177 (47%), Gaps = 27/177 (15%)
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+++F Y D+ +L +P G + L G++G+GK+T++ LI +P+ GE+L +
Sbjct: 6 ELDFDYH---DQPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFER 62
Query: 449 VNLK------EFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAAN 501
++K + QL ++ + G+ P L ++R+N Y I +
Sbjct: 63 QSIKKDLCTYQKQLCFVGHRSGI---NPYL---TLRENCLYDIHFSPGAVGITELCRLFS 116
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
H I + P GL LS GQK++VA+ R + ++ LLDE ALD S
Sbjct: 117 LEHLI-DYPCGL----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELS 162
|
Length = 200 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 67.4 bits (164), Expect = 5e-13
Identities = 39/182 (21%), Positives = 62/182 (34%), Gaps = 43/182 (23%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV 1097
PG+ I +VG GSGK+T+ L R P G + E +V
Sbjct: 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLL--------- 51
Query: 1098 LFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157
+VG + SG + R+A+A A +P +L+
Sbjct: 52 ----------------------------IIVGGKKASGSGELRLRLALALARKLKPDVLI 83
Query: 1158 LDEATSALDIESERVVQDALDQVMVD------RTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
LDE TS LD E E ++ + ++ T+++ L+ IV
Sbjct: 84 LDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIV 143
Query: 1212 EK 1213
Sbjct: 144 LL 145
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 70.0 bits (172), Expect = 6e-13
Identities = 62/218 (28%), Positives = 105/218 (48%), Gaps = 38/218 (17%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL---QVKWLRQQMG 1090
L + + ++L+G +G+GK+TV + L FY P+ G I L G I+ L Q+ +MG
Sbjct: 26 LEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIA----RMG 81
Query: 1091 VVS--QEPVLFSD-TIRAN--IAEMANAN-GFISGL----------QEGYD------TLV 1128
VV Q LF + T+ N +A+ G SGL E D V
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV 141
Query: 1129 GERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
G L+ GQ++R+ IAR +V +P+IL+LDE + L+ + + + + + ++
Sbjct: 142 GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRN 201
Query: 1183 DR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHE 1217
+ T L++ H + + + I VV+QG + G+ E
Sbjct: 202 EHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239
|
Length = 255 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-13
Identities = 54/203 (26%), Positives = 104/203 (51%), Gaps = 25/203 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ L++V+ S+ R ++L+ L + G I L+G +G+GKST++ ++ P G +
Sbjct: 5 VSLENVSVSFGQR---RVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI 61
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
+G + ++ ++ +K+ L + P+ ++ +R + KE+I A + A H
Sbjct: 62 KRNG----KLRIGYVPQKLYLDTTLPLTVNRFLRL-----RPGTKKEDILPALKRVQAGH 112
Query: 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
I Q +LSGG+ QRV +ARA++ P++L+LDE T +D + +
Sbjct: 113 LIDAPMQ-----------KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYD 161
Query: 565 ALD--RVMINRTTVIVSHRLSLI 585
+D R ++ ++VSH L L+
Sbjct: 162 LIDQLRRELDCAVLMVSHDLHLV 184
|
Length = 251 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 7e-13
Identities = 53/184 (28%), Positives = 90/184 (48%), Gaps = 39/184 (21%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD-----GVEIQKLQV 1082
V D+ L + PGK + L+G +G+GKST++ ++ P G I + G QKL +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNGKLRIGYVPQKLYL 78
Query: 1083 ---------KWLRQQMGVVSQE--PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGER 1131
++LR + G ++ P L R + +A +Q
Sbjct: 79 DTTLPLTVNRFLRLRPGTKKEDILPAL----KRVQAGHLIDAP-----MQ---------- 119
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVV 1189
+LSGG+ QRV +ARA++ P++L+LDE T +D+ + + D +DQ+ +D L+V
Sbjct: 120 --KLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMV 177
Query: 1190 AHRL 1193
+H L
Sbjct: 178 SHDL 181
|
Length = 251 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.7 bits (170), Expect = 8e-13
Identities = 70/249 (28%), Positives = 115/249 (46%), Gaps = 41/249 (16%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVI----SLIQRFYDPQAGEVLIDGVNLKEFQL 456
Q L+ L I +G + AL+G SGSGKST++ LI + L+ +E +L
Sbjct: 18 QALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRL 77
Query: 457 ----KWIREKIGLVSQEPVLLSS-SIRDNIAYGK--------------THATKEEIQAAA 497
+ R G + Q+ L++ S+ +N+ G T K+ A
Sbjct: 78 ARDIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQAL 137
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
HF Q + T LSGGQ+QRVAIARA+++ +++L DE ++LD E
Sbjct: 138 TRVGMVHFAH---QRVST--------LSGGQQQRVAIARALMQQAKVILADEPIASLDPE 186
Query: 558 SGRMVQEALDRVMINR--TTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTH----SELLE 610
S R+V + L + N T V+ H++ +R I ++QG + G+ +E +
Sbjct: 187 SARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDGSSQQFDNERFD 246
Query: 611 NPYGAYNRL 619
+ Y + NR+
Sbjct: 247 HLYRSINRV 255
|
Length = 262 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.0 bits (169), Expect = 9e-13
Identities = 57/194 (29%), Positives = 80/194 (41%), Gaps = 51/194 (26%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI-------DGVNLKEF 454
+L L + G L G SGSGKST++ + Y P G++L+ D V +
Sbjct: 26 VLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTAEPR 85
Query: 455 QLKWIREK-IGLVSQ---------------EPVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
++ +R IG VSQ EP+L A + A
Sbjct: 86 EVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLL---------------ARGVPREVARA 130
Query: 499 AANASHFIKNLPQGL-----DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A NLP+ L T SGG++QRV IAR I D ILLLDE T++
Sbjct: 131 KAADLLTRLNLPERLWSLAPAT--------FSGGEQQRVNIARGFIVDYPILLLDEPTAS 182
Query: 554 LDSESGRMVQEALD 567
LD+ + +V E +
Sbjct: 183 LDATNRAVVVELIR 196
|
Length = 235 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-13
Identities = 57/221 (25%), Positives = 104/221 (47%), Gaps = 25/221 (11%)
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP----SSGHITLDGVEIQK 1079
+ + LT+ G+ +ALVG SGSGKS + ++G + LDG +
Sbjct: 14 AAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAP 73
Query: 1080 LQVKWLRQQMGVVSQEP-VLFS--DTIRANIAEMANANGFIS------------GLQEGY 1124
++ +++ + Q P F+ T+ + E A G + GL+
Sbjct: 74 CALR--GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA- 130
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
++ ++SGG QR+ IA A++ E ++ DE T+ LD+ ++ + D L+ ++ R
Sbjct: 131 ARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKR 190
Query: 1185 T--TLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLIST 1222
L+V H + + + A +AV+S G IVE+G E+L +
Sbjct: 191 ALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLFNA 231
|
Length = 254 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 66.8 bits (164), Expect = 1e-12
Identities = 30/66 (45%), Positives = 41/66 (62%), Gaps = 12/66 (18%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG----RMVQEALDRVMINRTTVI-V 578
LSGG++QR+A AR ++ P+ + LDEATSALD ES ++++E TVI V
Sbjct: 92 LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESEDRLYQLLKELG-------ITVISV 144
Query: 579 SHRLSL 584
HR SL
Sbjct: 145 GHRPSL 150
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 67.5 bits (166), Expect = 1e-12
Identities = 44/195 (22%), Positives = 85/195 (43%), Gaps = 39/195 (20%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLR 1086
RD+ + G+ + + G G+G++ + L P+SG ITLDG + + +R
Sbjct: 15 AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSPRDAIR 74
Query: 1087 QQMGVVSQEPV---LFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142
+ V ++ L D ++ NIA LSGG +Q+
Sbjct: 75 AGIAYVPEDRKREGLVLDLSVAENIA----------------------LSSLLSGGNQQK 112
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLST----- 1195
V +AR + ++P++L+LDE T +D+ ++ + + + + D L++ S+
Sbjct: 113 VVLARWLARDPRVLILDEPTRGVDVGAKAEIYRLIRE-LADAGKAVLLI----SSELDEL 167
Query: 1196 IKNAHLIAVVSQGMI 1210
+ I V+ +G I
Sbjct: 168 LGLCDRILVMYEGRI 182
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 70.1 bits (172), Expect = 1e-12
Identities = 66/217 (30%), Positives = 112/217 (51%), Gaps = 27/217 (12%)
Query: 419 VGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL---KEFQLKWIREKIGLVSQEPVLLSS 475
VG SG GKST I GEV G +L K+ + + +R I ++ Q+P L+S
Sbjct: 53 VGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLGMKDDEWRAVRSDIQMIFQDP--LAS 110
Query: 476 -----SIRDNIA-----YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525
+I + IA Y +++E++ +A + LP + N H + S
Sbjct: 111 LNPRMTIGEIIAEPLRTY-HPKLSRQEVKDRVKAMMLK--VGLLPNLI--NRYPH--EFS 163
Query: 526 GGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQ--EALDRVMINRTTVIVSHRL 582
GGQ QR+ IARA+I +P++++ DE SALD S ++V + L R M + + ++H L
Sbjct: 164 GGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREM-GLSLIFIAHDL 222
Query: 583 SLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
+++++ ++ + V+ G VE GT+ E+ NP Y +
Sbjct: 223 AVVKHISDRVLVMYLGHAVELGTYDEVYHNPLHPYTK 259
|
Length = 331 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 2e-12
Identities = 60/213 (28%), Positives = 105/213 (49%), Gaps = 22/213 (10%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077
F+ RP ++ L +T + A +G +G+GK+T +S+L P+SG + + G +I
Sbjct: 938 FEPSGRPAVD---RLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDI 994
Query: 1078 QKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF--------ISGLQE--GYDT 1126
+ + +RQ +G+ Q +LF T+ +I A G + + E G
Sbjct: 995 ET-NLDAVRQSLGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQLEMEAMLEDTGLHH 1053
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
E LSGG ++++++A A V + K+++LDE TS +D S R + D L + RT
Sbjct: 1054 KRNEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTI 1113
Query: 1187 LVVAHRLSTIKNAHL----IAVVSQGMIVEKGS 1215
++ H + A L IA++SQG + G+
Sbjct: 1114 IMSTHHMD---EADLLGDRIAIISQGRLYCSGT 1143
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 2e-12
Identities = 40/160 (25%), Positives = 73/160 (45%), Gaps = 8/160 (5%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
+F L T+ G+ + + G +G GK+T++ +L P SG + +G + + + +
Sbjct: 14 MLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQRDEP-H 72
Query: 1087 QQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGV------QLSGGQ 1139
+ + + P L + + N+ A +G E VG G QLS GQ
Sbjct: 73 RNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGFEDLPAAQLSAGQ 132
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
++R+A+AR + + +LDE T+ALD ++ L
Sbjct: 133 QRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLRA 172
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 2e-12
Identities = 57/232 (24%), Positives = 106/232 (45%), Gaps = 23/232 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I + + Y + L+ G I +G +G+GKST + +I + P +G V
Sbjct: 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSV 59
Query: 445 LIDGVNLKEFQLKWIREKIG-LVSQEPVLLSSSIRDNIA-----YG-KTHATKEEIQAAA 497
+ G ++ + + ++ IG L P+ L +R+ + YG K K+ ++
Sbjct: 60 QVCGEDVLQNPKE-VQRNIGYLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMI 118
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E GL + QLS G +QRV +A+A+I DP++L+LDE T+ LD
Sbjct: 119 ELV-----------GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLDPN 167
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
++ + + ++T ++ +H + + + + +I +GKIV EL
Sbjct: 168 QLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDEL 219
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (166), Expect = 2e-12
Identities = 47/160 (29%), Positives = 76/160 (47%), Gaps = 18/160 (11%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ----KLQV 1082
+F L T+ G+ + L G +GSGK+T++ L+ P++G I LDG +I
Sbjct: 16 VLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDDPDVAEAC 75
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN-ANGFISGLQEGYDTLVGERGVQ------L 1135
+L + + +P L T+ N+ A G + + VG + L
Sbjct: 76 HYLGHRNAM---KPAL---TVAENLEFWAAFLGGEELDIAAALEA-VGLAPLAHLPFGYL 128
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
S GQK+RVA+AR +V I +LDE T+ALD + + +
Sbjct: 129 SAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 71.1 bits (174), Expect = 2e-12
Identities = 64/226 (28%), Positives = 95/226 (42%), Gaps = 18/226 (7%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCL-----LIPNGTIAALVGTSGSGKSTVISLIQRFY 437
IELKDV+ + + GF L I G I +VG +G GKST+ L Y
Sbjct: 336 DSIELKDVHMNPK---APEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLY 392
Query: 438 DPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAA 497
PQ GE+L+DG + R+ + + L I + HA+ + Q
Sbjct: 393 IPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPD---EGEHASLDNAQQYL 449
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ + +K G T LS GQ++R+A+ A ++D ILL DE + D
Sbjct: 450 QRLEIADKVKIEDGGFSTTTA-----LSTGQQKRLALICAWLEDRPILLFDEWAADQDPA 504
Query: 558 SGRMVQEAL--DRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
R E L D +T +I+SH A+ I + G IV+
Sbjct: 505 FKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 2e-12
Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 33/252 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAG 442
+ +KD++ S D+ IL G L + G + A++G +GSGKST+ + + + Y+ G
Sbjct: 2 LSIKDLHVSVE---DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGG 58
Query: 443 EVLIDGVNLKEFQLK-WIREKIGLVSQEPVLL---SSSIRDNIAYGKTHATKEEIQAAAE 498
V G +L E + E I + Q PV + S+ A + + Q +
Sbjct: 59 TVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRG--QEPLD 116
Query: 499 AANASHFIK------NLPQGLDT---NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+ ++ +P+ L T NVG SGG+K+R I + + +P + +LDE
Sbjct: 117 RFDFQDLMEEKIALLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDE 171
Query: 550 ATSALDSESGRMVQEALDRVMI-NRTTVIVSHR---LSLIRNANIIAVIQQGKIVEKGTH 605
+ S LD ++ ++V + ++ + R+ +IV+H L I+ + + V+ QG+IV+ G
Sbjct: 172 SDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDF 230
Query: 606 S---ELLENPYG 614
+ +L E YG
Sbjct: 231 TLVKQLEEQGYG 242
|
Length = 248 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.6 bits (173), Expect = 2e-12
Identities = 52/198 (26%), Positives = 99/198 (50%), Gaps = 28/198 (14%)
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083
+ + + LT+ PG+ AL+GE+G+GKST++ +L ++P+ G IT++ + KL K
Sbjct: 16 GPVHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK 75
Query: 1084 WLRQQ-MGVVSQEPVLFSD-TIRANI------------------AEM---ANANGFISGL 1120
Q +G++ QE + + T+ N+ EM A GL
Sbjct: 76 LAAQLGIGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGL 135
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
+ D V LS KQ + IA+ ++ + K++++DE TS+L + + ++Q+
Sbjct: 136 KVDLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQL 191
Query: 1181 MVDRTTLV-VAHRLSTIK 1197
+ T +V ++H+L+ I+
Sbjct: 192 RKEGTAIVYISHKLAEIR 209
|
Length = 510 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (166), Expect = 3e-12
Identities = 58/189 (30%), Positives = 87/189 (46%), Gaps = 21/189 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
VS +Y R V L L IP G+ +A+VG SG GKST++ LL PS+G +
Sbjct: 18 VSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTA 74
Query: 1076 EIQKLQ--VKWLRQQMGVVSQEPVL------FSDTIRANIAEMANANGFISGLQEGYDTL 1127
+ + + + + Q ++ + V+ R + A G E L
Sbjct: 75 PLAEAREDTRLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADRANEWPAAL 134
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--T 1185
G GQKQRVA+ARA++ P +LLLDE ALD + +QD ++ + T
Sbjct: 135 SG--------GQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT 186
Query: 1186 TLVVAHRLS 1194
L+V H +S
Sbjct: 187 VLLVTHDVS 195
|
Length = 257 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 69.4 bits (170), Expect = 3e-12
Identities = 64/213 (30%), Positives = 101/213 (47%), Gaps = 30/213 (14%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL-DGVEIQKL------QVKWLR 1086
L I G+ L+G SGSGKST++ + S G + + DG + ++ LR
Sbjct: 45 LDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATLRRLR 104
Query: 1087 Q-QMGVVSQEPVLFS-DTIRANIA--------------EMANANGFISGLQEGYDTLVGE 1130
++ +V Q+ L T+ N+A + + + GL + D GE
Sbjct: 105 THRVSMVFQQFALLPWRTVEENVAFGLEMQGMPKAERRKRVDEQLELVGLAQWADRKPGE 164
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLV 1188
LSGG +QRV +ARA E ILL+DE SALD +QD L Q + +T +
Sbjct: 165 ----LSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDELLELQSKLKKTIVF 220
Query: 1189 VAHRL-STIKNAHLIAVVSQGMIVEKGSHESLI 1220
V+H L +K + IA++ G I++ G+ E ++
Sbjct: 221 VSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIV 253
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 3e-12
Identities = 54/243 (22%), Positives = 100/243 (41%), Gaps = 35/243 (14%)
Query: 373 VNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISL 432
V + D RG +KDV+F + G I + G +G+G+S ++
Sbjct: 260 VEDLSVKDRRGVTAVKDVSFE----------------VRAGEIVGIAGVAGNGQSELVEA 303
Query: 433 IQRFYDPQAGEVLIDGVNLKEFQ--LKWIREKIGLVSQEP----VLLSSSIRDNIA---- 482
I P +G +L++G ++ + R + V ++ ++L S+ +N+
Sbjct: 304 ISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRH 363
Query: 483 YGKTHATKEEIQAAAEAANASHFIKNL---PQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539
K + + A A I+ D LSGG +Q++ +AR +
Sbjct: 364 DKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPAR----SLSGGNQQKLILARELA 419
Query: 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI-VSHRLSLIRN-ANIIAVIQQG 597
+ P +L+ + T LD + + E L + V+ +S L I ++ IAVI +G
Sbjct: 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEG 479
Query: 598 KIV 600
+IV
Sbjct: 480 RIV 482
|
Length = 501 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.1 bits (167), Expect = 3e-12
Identities = 64/234 (27%), Positives = 113/234 (48%), Gaps = 35/234 (14%)
Query: 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL------------ 451
N L + I +L+G +G+GK+TV + + FY P G +L+ G ++
Sbjct: 22 NNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81
Query: 452 --KEFQ-LKWIREKIG----LVSQEPVLLSSSIRDNIAYG--KTHATKEEIQAAAEA-AN 501
+ FQ ++ RE LV+Q L + + G KT A + +A +EA
Sbjct: 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKT-----GLFSGLLKTPAFR---RAESEALDR 133
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
A+ +++ + GL + L+ GQ++R+ IAR M+ P IL+LDE + L+ + +
Sbjct: 134 AATWLERV--GLLEHANRQAGNLAYGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKE 191
Query: 562 VQEALD--RVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
+ E + R N T +++ H + L+ ++ I V+ QG + GT E+ NP
Sbjct: 192 LDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPEEIRNNP 245
|
Length = 255 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.6 bits (165), Expect = 3e-12
Identities = 56/200 (28%), Positives = 97/200 (48%), Gaps = 24/200 (12%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLR 1086
V D+ LT+ G+ + L+G +G+GK+T ++ +G+I +D +I L + R
Sbjct: 18 VVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARAR 77
Query: 1087 QQMGVVSQEPVLFSD-----------TIRANIAEMANANGFISGLQEGYDT-LVGERGVQ 1134
+ +G + QE +F IR +++ + ++E + L G
Sbjct: 78 RGIGYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSMGQS 137
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD----IESERVVQDALDQ----VMVD--- 1183
LSGG+++RV IARA+ PK +LLDE + +D I+ +R+++ D ++ D
Sbjct: 138 LSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNV 197
Query: 1184 RTTLVVAHRLSTIKNAHLIA 1203
R TL V R + HLIA
Sbjct: 198 RETLAVCERAYIVSQGHLIA 217
|
Length = 241 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.2 bits (164), Expect = 4e-12
Identities = 54/173 (31%), Positives = 94/173 (54%), Gaps = 16/173 (9%)
Query: 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
+E VM + F +VS Y I+ ++ L I G+ + L+G +G+GK+T++ L
Sbjct: 1 MEKVM--LSFDKVSAHYG---KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDP 55
Query: 1064 DPSSGHITLDGVEIQKLQV-KWLRQQMGVVSQEPVLFSD-TIRANIAE---MANANGFIS 1118
+SG I DG +I Q K +R+ + +V + +FS T+ N+A A + F
Sbjct: 56 RATSGRIVFDGKDITDWQTAKIMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQE 115
Query: 1119 GLQEGYDTL--VGERGVQ----LSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
++ Y+ + ER +Q +SGG++Q +AI RA++ +P++LLLDE + L
Sbjct: 116 RIKWVYELFPRLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL 168
|
Length = 237 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 66.4 bits (162), Expect = 4e-12
Identities = 42/166 (25%), Positives = 74/166 (44%), Gaps = 17/166 (10%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455
R + +G + G + G +GSGK+T++ ++ P AG VL++G L +
Sbjct: 9 ERDGRALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR 68
Query: 456 LKWIREKIGLVSQEPVLLSSSIRDNIA-YGKTHATKEEIQAAAEAANASHFIKNLPQGLD 514
R + L + + S+ +N+ + H+ ++ +A A
Sbjct: 69 DSIARGLLYLGHAPGIKTTLSVLENLRFWHADHSDEQVEEALARV--------------G 114
Query: 515 TNVGEHGI--QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
N E QLS GQ++RVA+AR ++ + +LDE T+ALD
Sbjct: 115 LNGFEDRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALDKAG 160
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.7 bits (169), Expect = 5e-12
Identities = 52/168 (30%), Positives = 78/168 (46%), Gaps = 45/168 (26%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTV---ISLLQRFYDPSSGHITLDGVEIQKLQV 1082
+V + + L + G+ I LVG SG GKST+ ++ L+R +SG I + G + +L+
Sbjct: 17 TQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERI---TSGEIWIGGRVVNELEP 73
Query: 1083 K-----------------WLRQQM-------GVVSQEPVLFSDTIRANIAEMANANGFIS 1118
+R+ M G+ E I +AE A I
Sbjct: 74 ADRDIAMVFQNYALYPHMSVRENMAYGLKIRGMPKAE-------IEERVAEAAR----IL 122
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
L+ L+ + +LSGGQ+QRVA+ RAIV+EP + L DE S LD
Sbjct: 123 ELEP----LLDRKPRELSGGQRQRVAMGRAIVREPAVFLFDEPLSNLD 166
|
Length = 356 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 5e-12
Identities = 55/210 (26%), Positives = 97/210 (46%), Gaps = 26/210 (12%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG-VEIQKLQVKWLRQQ 1088
DL ++ PG+ L+G +G+GK+T++ ++ P G + DG ++ KL +
Sbjct: 22 NDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH-RIAR 80
Query: 1089 MGVVS--QEPVLFSD-TIRANIAEMAN-------ANGFISGLQEGYDT---------LVG 1129
G+ Q+P +F + T+R N+ E+A A+ F E L
Sbjct: 81 AGIGRKFQKPTVFENLTVRENL-ELALNRDKSVFASLFARLRAEERRRIDELLATIGLGD 139
Query: 1130 ERGVQ---LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
ER LS GQKQ + I + ++PK+LLLDE + + + L + +
Sbjct: 140 ERDRLAALLSHGQKQWLEIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSI 199
Query: 1187 LVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
LVV H + ++ A + V+ +G ++ +GS
Sbjct: 200 LVVEHDMGFVREIADKVTVLHEGSVLAEGS 229
|
Length = 249 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 5e-12
Identities = 67/243 (27%), Positives = 101/243 (41%), Gaps = 40/243 (16%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS- 1066
M L V+ R H + RDL L I PG+ AL+G +G+GKST++ L
Sbjct: 1 MLTADHLHVA-----RRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGG 55
Query: 1067 -------SGHITLDG---VEIQKLQVKWLRQQMGVVSQEPVLFS-DTI---------RAN 1106
+G +TL+G I ++ LR + +Q FS I R
Sbjct: 56 APRGARVTGDVTLNGEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRA 115
Query: 1107 IAEMANANGFISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVK---------EPKI 1155
A G LVG LSGG+ RV AR + + P+
Sbjct: 116 GALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRY 175
Query: 1156 LLLDEATSALDIESERVVQDALDQVMVDRT--TLVVAHRLS-TIKNAHLIAVVSQGMIVE 1212
LLLDE T+ALD+ + + D + ++ D L + H + ++A IA+++ G IV
Sbjct: 176 LLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVA 235
Query: 1213 KGS 1215
G+
Sbjct: 236 HGA 238
|
Length = 272 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 6e-12
Identities = 43/174 (24%), Positives = 78/174 (44%), Gaps = 13/174 (7%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455
+R + + G + G + G +G GK+T++ ++ P +GEV +G L E +
Sbjct: 9 SRGERMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR 68
Query: 456 LKWIREKIGLVSQEPVLLSSSIRDNIA-YGKTHATKE-EIQAAAEAANASHFIKNLPQGL 513
+ R + L + S +N+ + H + I+ A A + F ++LP
Sbjct: 69 DEPHRNILYLGHLPGLKPELSALENLHFWAAIHGGAQRTIEDALAAVGLTGF-EDLPAA- 126
Query: 514 DTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD 567
QLS GQ++R+A+AR + + +LDE T+ALD ++ L
Sbjct: 127 ---------QLSAGQQRRLALARLWLSRAPLWILDEPTTALDKAGVALLAGLLR 171
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 6e-12
Identities = 52/213 (24%), Positives = 95/213 (44%), Gaps = 26/213 (12%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK-------LQVKW 1084
L + G+ + LVG +G+GKST+++ + SG I G ++ +
Sbjct: 18 LSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAY 76
Query: 1085 LRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144
L QQ PV T+ ++G D L G QLSGG+ QRV
Sbjct: 77 LSQQQTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALDDKL-GRSTNQLSGGEWQRVR 135
Query: 1145 IARAIVK-------EPKILLLDEATSALDIESERVVQDALDQVMVD-----RTTLVVAHR 1192
+A +++ ++LLLDE ++LD+ Q ALD+++ ++ +H
Sbjct: 136 LAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLLSALCQQGLAIVMSSHD 191
Query: 1193 LS-TIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
L+ T+++AH ++ +G ++ G E +++
Sbjct: 192 LNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224
|
Length = 248 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 66.5 bits (163), Expect = 7e-12
Identities = 57/222 (25%), Positives = 101/222 (45%), Gaps = 40/222 (18%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVIS----LLQRFYDPSSGHITLDGVEIQKLQVK---- 1083
L + G+ + LVG +G+GKST+++ LL P SG I G ++
Sbjct: 15 LSAEVRAGEILHLVGPNGAGKSTLLARMAGLL-----PGSGSIQFAGQPLEAWSAAELAR 69
Query: 1084 ---WLRQQMGVVSQEPVL----FSDTIRANIAEMANANGFISGLQEGYDTLVGERGV-QL 1135
+L QQ PV + +A+A ++ D L R V QL
Sbjct: 70 HRAYLSQQQTPPFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKL--GRSVNQL 127
Query: 1136 SGGQKQRVAIA-------RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD----- 1183
SGG+ QRV +A I ++LLLDE ++LD+ Q ALD+++ +
Sbjct: 128 SGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQ----QAALDRLLSELCQQG 183
Query: 1184 RTTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
++ +H L+ T+++A + ++ QG ++ G + +++ +N
Sbjct: 184 IAVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.9 bits (169), Expect = 8e-12
Identities = 63/188 (33%), Positives = 94/188 (50%), Gaps = 31/188 (16%)
Query: 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ-MGV 1091
L + PG+ +ALVGE+G+GKST++ +L Y +G I G E+ K ++ +G+
Sbjct: 24 ALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAGIGI 83
Query: 1092 VSQEPVLFSD-TIRANI---AEMANANGFIS---------------GLQEGYDTLVGERG 1132
+ QE L TI NI E N G I L+ D LVGE
Sbjct: 84 IHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFSSDKLVGE-- 141
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSAL-DIESE---RVVQDALDQVMVDRTTLV 1188
LS G++Q V IA+ + E K++++DE T AL D E+E RV+++ Q R +
Sbjct: 142 --LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQ---GRGIVY 196
Query: 1189 VAHRLSTI 1196
++HRL I
Sbjct: 197 ISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 1e-11
Identities = 54/163 (33%), Positives = 77/163 (47%), Gaps = 17/163 (10%)
Query: 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG--V 1075
F+Y P V + L L LVG +G GKST+ L P G + G +
Sbjct: 9 FRYQDEP---VLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPL 65
Query: 1076 EIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA----EMANANGFISGLQEGYDTLVG 1129
+ K + LRQQ+ V Q+P +F I ++IA + I+ + TLV
Sbjct: 66 DYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVD 125
Query: 1130 ERGVQ------LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
+ + LS GQK+RVAIA A+V + + LLLDE T+ LD
Sbjct: 126 AQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLD 168
|
Length = 271 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 1e-11
Identities = 51/202 (25%), Positives = 101/202 (50%), Gaps = 25/202 (12%)
Query: 1038 PGKTIALVGESGSGKSTVISLLQRFYDPS----SGHITLDGVEIQKLQVK----WLRQQ- 1088
PG+ +A++G SG+GK+T+++ L F P SG + L+G+ I +++ +++Q
Sbjct: 50 PGELLAVMGSSGAGKTTLMNALA-FRSPKGVKGSGSVLLNGMPIDAKEMRAISAYVQQDD 108
Query: 1089 MGVVS---QEPVLFSDTIR-----ANIAEMANANGFIS--GLQEGYDTLVGERGVQ--LS 1136
+ + + +E ++F +R + + + GL++ +T +G G LS
Sbjct: 109 LFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKCANTRIGVPGRVKGLS 168
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIES-ERVVQDALDQVMVDRTTLVVAHRLST 1195
GG+++R+A A ++ +P +L DE TS LD VVQ +T + H+ S+
Sbjct: 169 GGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSS 228
Query: 1196 --IKNAHLIAVVSQGMIVEKGS 1215
+ I ++++G + GS
Sbjct: 229 ELFELFDKIILMAEGRVAYLGS 250
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 64.9 bits (159), Expect = 1e-11
Identities = 49/175 (28%), Positives = 82/175 (46%), Gaps = 23/175 (13%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455
R + +G + G L G +GSGK+T++ LI P AG + +DG +
Sbjct: 11 VRGGRVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDG---GDID 67
Query: 456 LKWIREKIGLVSQ----EPVLLSSSIRDNIAY-GKTHATKE-EIQAAAEAANASHFIKNL 509
+ E + +P L ++ +N+ + +E +I AA EA + + +L
Sbjct: 68 DPDVAEACHYLGHRNAMKPAL---TVAENLEFWAAFLGGEELDIAAALEAVGLAP-LAHL 123
Query: 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564
P G LS GQK+RVA+AR ++ + I +LDE T+ALD+ + + E
Sbjct: 124 PFG----------YLSAGQKRRVALARLLVSNRPIWILDEPTAALDAAAVALFAE 168
|
Length = 207 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.4 bits (168), Expect = 1e-11
Identities = 59/209 (28%), Positives = 103/209 (49%), Gaps = 22/209 (10%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA---GEVLIDGVNLKEFQLKWI 459
L+ L + G I +L G +G+GKST++ ++ Y P GE++ +G +E Q I
Sbjct: 21 LDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNI 76
Query: 460 REK----IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD 514
R+ I ++ QE L+ S+ +NI G + A A + L LD
Sbjct: 77 RDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQL--KLD 134
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSESG---RMVQEALDRVM 570
N L GQ+Q V IA+A+ K R+L+LDE T++L +SE+ ++++
Sbjct: 135 INPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAH-- 192
Query: 571 INRTTVIVSHRLSLIRN-ANIIAVIQQGK 598
+ +SH+L+ ++ ++ I VI+ G+
Sbjct: 193 -GIACIYISHKLNEVKAISDTICVIRDGR 220
|
Length = 506 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 68.8 bits (168), Expect = 1e-11
Identities = 57/192 (29%), Positives = 97/192 (50%), Gaps = 17/192 (8%)
Query: 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-RFYDPQ-AGEVLIDGVNLKEFQLKWI 459
ILNG + G I A++G SGSGKST+++ + R G +L + K I
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPT----KQI 138
Query: 460 REKIGLVSQEPVLLSS-SIRDNIAYGK-----THATKEEIQAAAEAANASHFIKNLPQGL 513
++ G V+Q+ +L ++R+ + + TK+E AE+ + L +
Sbjct: 139 LKRTGFVTQDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISE---LGLTKCE 195
Query: 514 DTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG-RMVQEALDRVMI 571
+T +G I+ +SGG+++RV+IA M+ +P +L+LDE TS LD+ + R+V
Sbjct: 196 NTIIGNSFIRGISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQK 255
Query: 572 NRTTVIVSHRLS 583
+T V H+ S
Sbjct: 256 GKTIVTSMHQPS 267
|
Length = 659 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 1e-11
Identities = 57/205 (27%), Positives = 94/205 (45%), Gaps = 8/205 (3%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA---GEVLIDGVNLKEFQLKWI 459
L+G L + G L G +G+GKST++ ++ Y P GE+ G LK ++
Sbjct: 17 LDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVY-PHGTWDGEIYWSGSPLKASNIRDT 75
Query: 460 REK-IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV 517
I ++ QE L+ S+ +NI G A + + Q NV
Sbjct: 76 ERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNV 135
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-DSESGRMVQEALDRVMINRTTV 576
GGQ+Q V IA+A+ K R+L+LDE +S+L + E+ ++ D V
Sbjct: 136 TRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACV 195
Query: 577 IVSHRLSLIRN-ANIIAVIQQGKIV 600
+SH+L+ ++ + I VI+ G+ V
Sbjct: 196 YISHKLNEVKAVCDTICVIRDGQHV 220
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 68.3 bits (167), Expect = 1e-11
Identities = 67/218 (30%), Positives = 100/218 (45%), Gaps = 42/218 (19%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ F SF YP P + F++L I IA+VG +G GKST++ L+ PSSG +
Sbjct: 509 ISFSDASFGYPGGPLL--FKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
+ + +M V SQ V D + M F ++ +G
Sbjct: 567 -----------FRSAKVRMAVFSQHHVDGLDLSSNPLLYMMRC--FPGVPEQKLRAHLGS 613
Query: 1131 RGVQ----------LSGGQKQRVAIARAIVKEPKILLLDEATSALDIES-ERVVQDALDQ 1179
GV LSGGQK RVA A+ K+P ILLLDE ++ LD+++ E ++Q
Sbjct: 614 FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLDLDAVEALIQGL--- 670
Query: 1180 VMVDRTTLVVAHRLSTIKNAHLIA-------VVSQGMI 1210
V+ L+V+H + HLI+ VVS+G +
Sbjct: 671 VLFQGGVLMVSH------DEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 68.1 bits (166), Expect = 2e-11
Identities = 56/215 (26%), Positives = 91/215 (42%), Gaps = 11/215 (5%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFR--DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS 1066
++ V E F + L I G + +VGE+G GKST+ L Y P
Sbjct: 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQ 395
Query: 1067 SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA---NANGFISGLQEG 1123
G I LDG + R + + LF D I + E A NA ++ L+
Sbjct: 396 EGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIA 455
Query: 1124 YDTLVGERG----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL-- 1177
+ + G LS GQ++R+A+ A +++ ILL DE + D +R + L
Sbjct: 456 DKVKIEDGGFSTTTALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLP 515
Query: 1178 DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVE 1212
D +T ++++H + A I ++ G IV+
Sbjct: 516 DLKRQGKTIIIISHDDQYFELADQIIKLAAGCIVK 550
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 59/216 (27%), Positives = 105/216 (48%), Gaps = 24/216 (11%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGLV 466
L + +G I L+G +G+GK+T ++ AG ++ID ++ L R IG +
Sbjct: 24 LTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGIGYL 83
Query: 467 SQEPVLLSS-SIRDNIAYG---KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
QE + S+ DN+ + + E+ + A I++L + G
Sbjct: 84 PQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEFHIEHLRDSM-------GQ 136
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES----GRMVQEALDR---VMINRTT 575
LSGG+++RV IARA+ +P+ +LLDE + +D S R+++ D V+I T
Sbjct: 137 SLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLI--TD 194
Query: 576 VIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
V L++ A I++ QG ++ GT +E+L++
Sbjct: 195 HNVRETLAVCERAYIVS---QGHLIAHGTPTEILQD 227
|
Length = 241 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 60/220 (27%), Positives = 111/220 (50%), Gaps = 20/220 (9%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--GEVLIDGVNLKEFQLKW 458
Q L+ L I G I L+G +G+GK+T++ + DP+A G ++ DG ++ ++Q
Sbjct: 19 QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCG--DPRATSGRIVFDGKDITDWQTAK 76
Query: 459 I-REKIGLVSQ-EPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516
I RE + +V + V ++ +N+A G A +++ Q + P+ +
Sbjct: 77 IMREAVAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYEL-----FPRLHERR 131
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--- 573
+ G +SGG++Q +AI RA++ PR+LLLDE + L + ++Q+ D + R
Sbjct: 132 IQRAG-TMSGGEQQMLAIGRALMSQPRLLLLDEPSLGL---APIIIQQIFDTIEQLREQG 187
Query: 574 -TTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLEN 611
T +V + ++ A+ V++ G +V + T LL N
Sbjct: 188 MTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227
|
Length = 237 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.9 bits (158), Expect = 2e-11
Identities = 48/183 (26%), Positives = 83/183 (45%), Gaps = 33/183 (18%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L+ G+ + L+G +G+GK+T++ + P+ G + + G K + +G V
Sbjct: 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVP 55
Query: 1094 QE-------PV---------------LFSDTIRANIAEMANANGFISGLQEGYDTLVGER 1131
Q P+ A+ A + +A + GL E D VGE
Sbjct: 56 QRHEFAWDFPISVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRV-GLTELADRPVGE- 113
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV-VA 1190
LSGGQ+QRV +ARA+ P +LLLDE + LD+ ++ ++ + ++ T ++
Sbjct: 114 ---LSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTT 170
Query: 1191 HRL 1193
H L
Sbjct: 171 HDL 173
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 2e-11
Identities = 60/199 (30%), Positives = 92/199 (46%), Gaps = 35/199 (17%)
Query: 392 FSYPARPDEQILNGFCLLIPNGTIA-----ALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
++YP ++ L F L + G+I+ ++G +G GK+T I ++ P G++ I
Sbjct: 1 YTYPTM--KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEI 58
Query: 447 DGVNLKEFQLKWIREKI-GLVSQEPVLLSSSIRD--NIAYGKTHATKEEIQAAAEAANAS 503
+ + ++ ++I+ G V LLSS +D Y KT E A
Sbjct: 59 ELDTV-SYKPQYIKADYEGTVRD---LLSSITKDFYTHPYFKT-----------EIAKPL 103
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+ Q LD V E LSGG+ QRVAIA + KD I LLDE ++ LD E M
Sbjct: 104 Q----IEQILDREVPE----LSGGELQRVAIAACLSKDADIYLLDEPSAYLDVEQRLMAS 155
Query: 564 EALDRVMIN--RTTVIVSH 580
+ + R N +T +V H
Sbjct: 156 KVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 56/193 (29%), Positives = 86/193 (44%), Gaps = 35/193 (18%)
Query: 403 LNGFCLLIPNGTIA-----ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457
F L + G I ++G +G GK+T + L+ P G V+ K +
Sbjct: 352 YGDFKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGSEEDLKVSYKP---Q 408
Query: 458 WIR-EKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIK--NLPQGLD 514
+I + G V LL S+IR + K EI +K NL L+
Sbjct: 409 YISPDYDGTVED---LLRSAIRSAFG---SSYFKTEI------------VKPLNLEDLLE 450
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR- 573
V E LSGG+ QRVAIA A+ ++ + LLDE ++ LD E +V + + R + N
Sbjct: 451 RPVDE----LSGGELQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNE 506
Query: 574 -TTVIVSHRLSLI 585
T ++V H + +I
Sbjct: 507 KTALVVDHDIYMI 519
|
Length = 591 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 64.5 bits (157), Expect = 3e-11
Identities = 52/216 (24%), Positives = 91/216 (42%), Gaps = 38/216 (17%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQE--- 469
G + L+G +G+GK+T++ I P G V + G + + IG V Q
Sbjct: 6 GELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGKG-----WRHIGYVPQRHEF 60
Query: 470 ----PVLLSSSIRDNIAYGKTH----------ATKEEIQAAAEAANASHFIKNLPQGLDT 515
P+ S+ + G+T A ++ A + + + P G
Sbjct: 61 AWDFPI----SVAHTVMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTE-LADRPVG--- 112
Query: 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTT 575
+LSGGQ+QRV +ARA+ P +LLLDE + LD + ++ E + T
Sbjct: 113 -------ELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTA 165
Query: 576 VI-VSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610
++ +H L+ V+ G+++ GT +L +
Sbjct: 166 ILMTTHDLAQAMATCDRVVLLNGRVIADGTPQQLQD 201
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 3e-11
Identities = 53/199 (26%), Positives = 92/199 (46%), Gaps = 6/199 (3%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
LTI G+ + L+G +GSGKST+ LL Y P SG I LDG + Q++ R+ V
Sbjct: 344 LTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVF 403
Query: 1094 QEPVLFSDTIRA-NIAEMANANGFISGLQEGYDTLVGERGV---QLSGGQKQRVAIARAI 1149
+ LF + A ++ L+ + T + + +LS GQK+R+A+ A+
Sbjct: 404 SDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALLLAL 463
Query: 1150 VKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQ 1207
++E IL+LDE + D R L ++ +T ++H +A + +
Sbjct: 464 LEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRN 523
Query: 1208 GMIVEKGSHESLISTKNGI 1226
G + E E + ++ +
Sbjct: 524 GQLSELTGEERDETARDAV 542
|
Length = 546 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 67.1 bits (164), Expect = 3e-11
Identities = 56/223 (25%), Positives = 101/223 (45%), Gaps = 23/223 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+EL++V F+Y + + L I G + L+G +GSGKST+ L+ Y PQ+GE+
Sbjct: 323 LELRNVRFAYQ--DNAFHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEI 380
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
L+DG + QL+ R+ L S+ D + + + A+
Sbjct: 381 LLDGKPVSAEQLEDYRK----------LFSAVFSDYHLFDQLLGPE---GKASPQLIEKW 427
Query: 505 F----IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ + D ++LS GQK+R+A+ A++++ IL+LDE + D R
Sbjct: 428 LQRLELAHKTSLNDGRFSN--LKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRR 485
Query: 561 -MVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
Q L + +T +SH +A+ + ++ G++ E
Sbjct: 486 EFYQVLLPLLKEQGKTIFAISHDDHYFIHADRLLEMRNGQLSE 528
|
Length = 546 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 3e-11
Identities = 71/266 (26%), Positives = 117/266 (43%), Gaps = 66/266 (24%)
Query: 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
+ V+ P P ++IL L G ++G +G+GKST++ ++ AG +
Sbjct: 7 MNRVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIM-------AG---V 54
Query: 447 DGVNLKEFQLK-WIRE--KIGLVSQEPVL-LSSSIRDNIAYG------------------ 484
D KEF + K+G + QEP L + ++R+N+ G
Sbjct: 55 D----KEFNGEARPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKF 110
Query: 485 --------KTHATKEEIQAAAEAANASHFIKN----------LPQGLDTNVGEHGIQLSG 526
A + E+Q +AA+A + P D +V + LSG
Sbjct: 111 AEPDADMDALLAEQAELQEIIDAADA-WDLDRKLEIAMDALRCPPW-DADVTK----LSG 164
Query: 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH-RLSLI 585
G+++RVA+ R ++ P +LLLDE T+ LD+ES +++ L T V V+H R L
Sbjct: 165 GERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQE--YPGTVVAVTHDRYFLD 222
Query: 586 RNANIIAVIQQGK-IVEKGTHSELLE 610
A I + +G+ I +G +S LE
Sbjct: 223 NVAGWILELDRGRGIPWEGNYSSWLE 248
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 4e-11
Identities = 42/169 (24%), Positives = 73/169 (43%), Gaps = 27/169 (15%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI----QKLQVKWLRQQMG 1090
+I + I ++G +G GK+T I +L P G I ++ + Q ++ +
Sbjct: 21 SISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELDTVSYKPQYIKAD---YEGT 77
Query: 1091 VVSQEPVLFSDTIRANIAEMANANGFIS------GLQEGYDTLVGERGVQLSGGQKQRVA 1144
V D + + + F + +++ D V E LSGG+ QRVA
Sbjct: 78 V--------RDLLSSITKDFYTHPYFKTEIAKPLQIEQILDREVPE----LSGGELQRVA 125
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAH 1191
IA + K+ I LLDE ++ LD+E + + + ++T VV H
Sbjct: 126 IAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEH 174
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 65.5 bits (160), Expect = 4e-11
Identities = 59/230 (25%), Positives = 100/230 (43%), Gaps = 44/230 (19%)
Query: 1035 TIPPGKTIALVGESGSGKS----TVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
++ G+ + +VGESGSGKS ++ L+ + + +G ++Q++ K R +G
Sbjct: 29 SVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVG 88
Query: 1091 VVSQEPVLFSD---------TIRANIAEMANANGFISGLQEGYDTLVGERGV-------- 1133
++ ++F D T+ I E + Q G +R +
Sbjct: 89 --AEVAMIFQDPMTSLNPCYTVGFQIMEAIKVH------QGGNKKTRRQRAIDLLNQVGI 140
Query: 1134 ------------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--Q 1179
QLSGG QRV IA AI PK+L+ DE T+ALD+ + + + L Q
Sbjct: 141 PDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQ 200
Query: 1180 VMVDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+ +++ H L+ + + AH I V+ G +VE G + YT
Sbjct: 201 QKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPYT 250
|
Length = 326 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 5e-11
Identities = 52/225 (23%), Positives = 84/225 (37%), Gaps = 58/225 (25%)
Query: 397 RPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL 456
R + + + + G + G +G+GK+T++ ++ P AGEV G ++ +
Sbjct: 12 RGERTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVR- 70
Query: 457 KWIREKIGLVSQEPVLLSSSIRDNIAY-GKTHATKEEIQAAAE-----AANASHFIKNLP 510
S + Y G K E+ A + S +
Sbjct: 71 ------------------ESYHQALLYLGHQPGIKTELTALENLHFWQRFHGSGNAATIW 112
Query: 511 QGLDTNVGEHGI------QLSGGQKQRVAIARAMIKDPRIL-LLDEATSALDSESGRMVQ 563
+ L VG G+ QLS GQ++RVA+AR + P L +LDE +ALD E ++
Sbjct: 113 EALAQ-VGLAGLEDLPVGQLSAGQQRRVALAR-LWLSPAPLWILDEPFTALDKEGVALL- 169
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSEL 608
T ++ +H QG IV TH L
Sbjct: 170 ----------TALMAAH-------------AAQGGIVLLTTHQPL 191
|
Length = 209 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 6e-11
Identities = 59/208 (28%), Positives = 97/208 (46%), Gaps = 15/208 (7%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L G I G I +G +G+GK+T + ++ P +GEV + G+ + + K++R +
Sbjct: 37 LKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRRKKFLR-R 95
Query: 463 IGLV--SQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQG--LDTNVG 518
IG+V + + + D+ A ++ A + L LDT V
Sbjct: 96 IGVVFGQKTQLWWDLPVIDSFYL---LAAIYDLPPARFKKRLDELSELLDLEELLDTPVR 152
Query: 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR-TTVI 577
QLS GQ+ R IA A++ +P IL LDE T LD + ++ L R TTV+
Sbjct: 153 ----QLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQENIRNFLKEYNRERGTTVL 208
Query: 578 V-SHRLSLI-RNANIIAVIQQGKIVEKG 603
+ SH + I A + VI +G+++ G
Sbjct: 209 LTSHYMKDIEALARRVLVIDKGRLLYDG 236
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.1 bits (159), Expect = 8e-11
Identities = 45/152 (29%), Positives = 72/152 (47%), Gaps = 21/152 (13%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+D+ L I G+ + VG SG GKST++ ++ D +SG + + + + + +
Sbjct: 20 KDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77
Query: 1090 GVVSQEPVLF---------------SDTIRANIAEMANANGFISGLQEGYDTLVGERGVQ 1134
G+V Q L+ + + I + N + LQ + L+ +
Sbjct: 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEV--LQLAH--LLDRKPKA 133
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGGQ+QRVAI R +V EP + LLDE S LD
Sbjct: 134 LSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
Length = 369 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 8e-11
Identities = 38/149 (25%), Positives = 71/149 (47%), Gaps = 8/149 (5%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+F L T+ G+ + + G +GSGK+T++ +L P +G + L+G + + R
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 1088 QMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGV------QLSGGQKQ 1141
+ + + + ++ N+ + ++E VG G QLS GQ++
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHS-DEQVEEALAR-VGLNGFEDRPVAQLSAGQQR 132
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESE 1170
RVA+AR ++ + +LDE T+ALD
Sbjct: 133 RVALARLLLSGRPLWILDEPTTALDKAGV 161
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 9e-11
Identities = 42/182 (23%), Positives = 93/182 (51%), Gaps = 18/182 (9%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
++ +PPG+ L+G +G+GK+T ++ +P+ G IT +G + + +
Sbjct: 17 AVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEI----KN 72
Query: 1088 QMGVVSQEPVLFSD-TIRANIAEMANANGF--------ISGLQEGYDTLVGERG---VQL 1135
++G + +E L+ T+ + +A G + E + +VG++ +L
Sbjct: 73 RIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLE-IVGKKTKKIKEL 131
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA-HRLS 1194
S G +Q++ A++ EP++L+LDE S LD + +++DA+ ++ + T++ + HR+
Sbjct: 132 SKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRME 191
Query: 1195 TI 1196
+
Sbjct: 192 HV 193
|
Length = 300 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (159), Expect = 1e-10
Identities = 64/236 (27%), Positives = 111/236 (47%), Gaps = 41/236 (17%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG----------VNLKEF---QLKWI 459
G A+VG SGSGKS + R + G V D + L E Q++ +
Sbjct: 42 GETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELSEQSAAQMRHV 101
Query: 460 R-EKIGLVSQEPVL-----------LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIK 507
R + ++ QEP+ ++ SIR + + EE A EA ++
Sbjct: 102 RGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASR-----EE--AMVEAKRMLDQVR 154
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD-SESGRMVQEAL 566
+P+ T + + QLSGG +QRV IA A+ P +L+ DE T+ALD + +++Q L
Sbjct: 155 -IPEA-QTILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQ--L 210
Query: 567 DRVM---INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618
+V+ ++ + ++H + ++ A+ + V+ QG+ VE G+ ++ P Y R
Sbjct: 211 IKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEAVETGSVEQIFHAPQHPYTR 266
|
Length = 623 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 1e-10
Identities = 46/194 (23%), Positives = 95/194 (48%), Gaps = 23/194 (11%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
G+ + +G +G+GKST + ++ + P SG + + G ++ + + +++ +G + +
Sbjct: 24 EAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNPKE-VQRNIGYLPE 82
Query: 1095 EPVLFSDTIRANIAEMANANGFISGLQEGYDT--------LVGERGVQ------LSGGQK 1140
L+ D + E I G++ LVG R Q LS G +
Sbjct: 83 HNPLYLDMY---VREYLQFIAGIYGMKGQLLKQRVEEMIELVGLRPEQHKKIGQLSKGYR 139
Query: 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAH 1200
QRV +A+A++ +PK+L+LDE T+ LD +++ + + D+T ++ H + ++
Sbjct: 140 QRVGLAQALIHDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVE--- 196
Query: 1201 LIAVVSQGMIVEKG 1214
A+ + +I+ KG
Sbjct: 197 --AICDRVIIINKG 208
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 65.3 bits (160), Expect = 1e-10
Identities = 53/185 (28%), Positives = 90/185 (48%), Gaps = 22/185 (11%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK-WLRQQM 1089
D+ G+ AL+GE+G+GKST++ +L Y P +G I +DG E++ L +
Sbjct: 22 DISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAGV 81
Query: 1090 GVVSQEPVLFSD-TIRANI--AEMANANGFI--SGLQEGYDTLVGERGVQ---------L 1135
++ QE L + T+ N+ ++ + G + L + GV L
Sbjct: 82 AIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKYL 141
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDI-ESE---RVVQDALDQVMVDRTTLVVAH 1191
S GQ+Q V IA+A+ + +++ DE TS+L E E RV+++ + R L V+H
Sbjct: 142 SIGQRQMVEIAKALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAE---GRVILYVSH 198
Query: 1192 RLSTI 1196
R+ I
Sbjct: 199 RMEEI 203
|
Length = 501 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 62.8 bits (153), Expect = 1e-10
Identities = 57/188 (30%), Positives = 84/188 (44%), Gaps = 34/188 (18%)
Query: 1034 LTIP-PGKTIALVGESGSGKSTVISLLQ--------RFYDPSSGHITLD---GVEIQKLQ 1081
L +P G+ + LVG +G GKST + +L +F DP LD G E+Q
Sbjct: 20 LPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYF 79
Query: 1082 VKWLRQQMGV------VSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTL----VGER 1131
K L + V V P + + + + G L E D L V +R
Sbjct: 80 TKLLEGDVKVIVKPQYVDLIPKAVKGKVGELL-KKKDERGK---LDELVDQLELRHVLDR 135
Query: 1132 GV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDI----ESERVVQDALDQVMVDRTT 1186
+ QLSGG+ QRVAIA A+ ++ DE +S LDI + R++++ + D
Sbjct: 136 NIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAED---DNYV 192
Query: 1187 LVVAHRLS 1194
LVV H L+
Sbjct: 193 LVVEHDLA 200
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 65.0 bits (159), Expect = 2e-10
Identities = 48/187 (25%), Positives = 85/187 (45%), Gaps = 28/187 (14%)
Query: 1034 LTIP-PGKTIALVGESGSGKSTVISLLQ--------RFYDPSSGHITLD---GVEIQKLQ 1081
L P PGK + ++G +G GKST + +L R+ DP S + G E+Q
Sbjct: 94 LPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRGTELQNYF 153
Query: 1082 VKWLRQQMGVVSQE------PVLFSDTIRANIAEMANANGFISGLQE--GYDTLVGERGV 1133
K ++ V + P + + + + + G + E G + ++
Sbjct: 154 KKLYEGELRAVHKPQYVDLIPKVVKGKVG-ELLKKVDERGKFDEVVERLGLENVLDRDVS 212
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----RVVQDALDQVMVDRTTLVV 1189
+LSGG+ QRVAIA A++++ + DE +S LDI RV+++ + + +VV
Sbjct: 213 ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAED---GKYVIVV 269
Query: 1190 AHRLSTI 1196
H L+ +
Sbjct: 270 EHDLAVL 276
|
Length = 591 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 2e-10
Identities = 50/215 (23%), Positives = 101/215 (46%), Gaps = 24/215 (11%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458
D++ ++ +P G I L+G +G+GK+T +I +P GE+ +G L +
Sbjct: 14 DKKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLS----QE 69
Query: 459 IREKIGLVSQEPVLLSS-SIRDNIAY------GKTHATKEEIQAAAEAANASHFIKNLPQ 511
I+ +IG + +E L ++ D + Y ++++QA E +
Sbjct: 70 IKNRIGYLPEERGLYPKMTVEDQLKYLAELKGMPKAEIQKKLQAWLERLEIVGKKTKKIK 129
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI 571
+LS G +Q++ A+I +P +L+LDE S LD + ++++A+ +
Sbjct: 130 -----------ELSKGNQQKIQFISAVIHEPELLILDEPFSGLDPVNVELLKDAIFELKE 178
Query: 572 NRTTVIVS-HRLSLI-RNANIIAVIQQGKIVEKGT 604
T+I S HR+ + + + ++++G+ V GT
Sbjct: 179 EGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213
|
Length = 300 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 64.7 bits (158), Expect = 2e-10
Identities = 65/222 (29%), Positives = 102/222 (45%), Gaps = 48/222 (21%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--- 441
I L + SY RP IL+ + G +VG +G+GKST++SLI + PQ
Sbjct: 261 IVLNNGVVSYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDH-PQGYSN 316
Query: 442 -----------GEVLIDGVNLKEFQLKWIREKIGLVSQEPVL---LSSSIRDNIAYGKTH 487
GE + D I++ IG VS L +S+S+R+ I G
Sbjct: 317 DLTLFGRRRGSGETIWD-----------IKKHIGYVSSSLHLDYRVSTSVRNVILSGFF- 364
Query: 488 ATKEEI---QAAAEAAN--ASHFIKNLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKD 541
+ I QA ++ A ++ L G+D + LS GQ++ I RA++K
Sbjct: 365 ---DSIGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQQRLALIVRALVKH 419
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVI-VSH 580
P +L+LDE LD + ++V+ +D V+I T ++ VSH
Sbjct: 420 PTLLILDEPLQGLDPLNRQLVRRFVD-VLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 61.0 bits (149), Expect = 4e-10
Identities = 58/240 (24%), Positives = 106/240 (44%), Gaps = 52/240 (21%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFR---DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS 1066
++ L VSF + F+ DL L + PG+ ++G +G+GK+T++ ++ P
Sbjct: 4 YLEGLSVSF--------DGFKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPD 55
Query: 1067 SGHITLDGVEIQKLQVKWLRQQMGVVS--QEPVLF------------------------- 1099
G + G ++ L + G+ Q+P +F
Sbjct: 56 EGSVLFGGTDLTGLPEH-QIARAGIGRKFQKPTVFENLTVFENLELALPRDKSVFASLFF 114
Query: 1100 --SDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157
S + I E+ GL + D L G LS GQKQ + I ++++PK+LL
Sbjct: 115 RLSAEEKDRIEEVLE----TIGLADEADRLAGL----LSHGQKQWLEIGMLLMQDPKLLL 166
Query: 1158 LDEATSAL-DIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
LDE + + D E+E+ + L + + +VV H + +++ A + V+ QG ++ +GS
Sbjct: 167 LDEPVAGMTDEETEKTA-ELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGS 225
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 4e-10
Identities = 67/225 (29%), Positives = 103/225 (45%), Gaps = 29/225 (12%)
Query: 413 GTIAALVGTSGSGKS----TVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG---- 464
G + +VG SGSGKS ++ LI A ++ +G +L+ K R +G
Sbjct: 33 GEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKERRNLVGAEVA 92
Query: 465 LVSQEPVLLSSSIRDNIAYG-------KTH---ATKEEIQAAAEAANASHFIKNLPQGLD 514
++ Q+P+ +S+ G K H K Q A + N I + LD
Sbjct: 93 MIFQDPM---TSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVG-IPDPASRLD 148
Query: 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--N 572
V H QLSGG QRV IA A+ P++L+ DE T+ALD + E L + N
Sbjct: 149 --VYPH--QLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKEN 204
Query: 573 RTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENPYGAY 616
V+++H L+L+ A+ I V+ G++VE G ++ P Y
Sbjct: 205 MALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDIFRAPRHPY 249
|
Length = 326 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 60.3 bits (147), Expect = 4e-10
Identities = 43/166 (25%), Positives = 71/166 (42%), Gaps = 43/166 (25%)
Query: 1024 PHIEVFRDLCLTIP-----------------PGKTIALVGESGSGKSTVISLL-QRFYDP 1065
+ +++L T+P PG AL+GESG+GK+T++ +L R
Sbjct: 1 GSVLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAG 60
Query: 1066 S-SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEG 1123
+G I ++G + K ++ G V Q+ V + T+R + A G
Sbjct: 61 VITGEILINGRPL----DKNFQRSTGYVEQQDVHSPNLTVREALRFSALLRG-------- 108
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
LS Q++R+ I + +P IL LDE TS LD ++
Sbjct: 109 -----------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQA 143
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 63.5 bits (155), Expect = 4e-10
Identities = 51/150 (34%), Positives = 74/150 (49%), Gaps = 7/150 (4%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
V+F Y V + LTI G+ + L+G +GSGKST+ LL Y P SG I LDG
Sbjct: 328 VTFAYQD-NGFSV-GPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGK 385
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTI--RANIAEMANANGFISGLQEGYD-TLVGER- 1131
+ Q + R+ V + LF + A A ++ L+ + L R
Sbjct: 386 PVTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRI 445
Query: 1132 -GVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
++LS GQK+R+A+ A+ +E ILLLDE
Sbjct: 446 SNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 61.3 bits (149), Expect = 5e-10
Identities = 67/246 (27%), Positives = 110/246 (44%), Gaps = 53/246 (21%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDP 1065
M ++ L VS + + R L L + PG+ A++G +GSGKST+ + L + Y+
Sbjct: 1 MLSIKDLHVSVE-----DKAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEV 55
Query: 1066 SSGHITLDG-----------------------VEIQKLQVKWLRQ-QMGVV----SQEPV 1097
+ G + G VEI + ++ Q + V QEP+
Sbjct: 56 TGGTVEFKGKDLLELSPEDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPL 115
Query: 1098 L---FSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154
F D + IA L+ D L V SGG+K+R I + V EP+
Sbjct: 116 DRFDFQDLMEEKIAL----------LKMPEDLLTRSVNVGFSGGEKKRNDILQMAVLEPE 165
Query: 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHR---LSTIKNAHLIAVVSQGMI 1210
+ +LDE+ S LDI++ ++V D ++ + R+ ++V H L IK + + V+ QG I
Sbjct: 166 LCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDY-VHVLYQGRI 224
Query: 1211 VEKGSH 1216
V+ G
Sbjct: 225 VKSGDF 230
|
Length = 248 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 63.0 bits (154), Expect = 5e-10
Identities = 53/202 (26%), Positives = 87/202 (43%), Gaps = 61/202 (30%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL-D 1073
RVS P P E+ +D+ L+ PG I ++G +G+GKST++ ++ +G
Sbjct: 9 RVSKVVP--PKKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP 66
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEPVL-FSDTIRANIAE-MANANGFISGLQE--------- 1122
G+++ G + QEP L + T+R N+ E +A + E
Sbjct: 67 GIKV------------GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPD 114
Query: 1123 -GYDTLVGERG-VQ---------------------------------LSGGQKQRVAIAR 1147
D L+ E+ +Q LSGG+++RVA+ R
Sbjct: 115 ADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDALRCPPWDADVTKLSGGERRRVALCR 174
Query: 1148 AIVKEPKILLLDEATSALDIES 1169
++ +P +LLLDE T+ LD ES
Sbjct: 175 LLLSKPDMLLLDEPTNHLDAES 196
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 62.9 bits (153), Expect = 6e-10
Identities = 51/213 (23%), Positives = 109/213 (51%), Gaps = 25/213 (11%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL----DGVEIQKLQVKW---LR 1086
L + G+ +VG SG+GK+T+ ++ +P+SG + + + V++ K +
Sbjct: 305 LEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAK 364
Query: 1087 QQMGVVSQEPVLFSD-TIRANIA---------EMANANGFIS----GLQEGYDTLVGER- 1131
+ +G++ QE L+ T+ N+ E+A I+ G E + ++
Sbjct: 365 RYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITLKMVGFDEEKAEEILDKY 424
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL--DQVMVDRTTLVV 1189
+LS G++ RVA+A+ ++KEP+I++LDE T +D ++ V ++ + +++T ++V
Sbjct: 425 PDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIV 484
Query: 1190 AHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
+H + + + A++ G IV+ G E ++
Sbjct: 485 SHDMDFVLDVCDRAALMRDGKIVKIGDPEEIVE 517
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 62.4 bits (152), Expect = 8e-10
Identities = 45/163 (27%), Positives = 74/163 (45%), Gaps = 25/163 (15%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
E FR++ L + G+ + L G G+G++ + L G I L+G EI L R
Sbjct: 277 EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QR 335
Query: 1087 QQMGVV-----SQEPVLFSDT-IRANI-AEMANANGFISGLQEGYDTLVGER-----GVQ 1134
G+V Q L+ D + N+ A N GF ++ + V ER ++
Sbjct: 336 LARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFW--IKPARENAVLERYRRALNIK 393
Query: 1135 ----------LSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
LSGG +Q+V IA+ + P++L++DE T +D+
Sbjct: 394 FNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDV 436
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 9e-10
Identities = 47/159 (29%), Positives = 78/159 (49%), Gaps = 28/159 (17%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVEIQKLQVKWLR--QQ 1088
L + G+ ++L GE+G+GKST++ +L Y P G I +G ++LQ +R ++
Sbjct: 26 LKVRAGEIVSLCGENGAGKSTLMKVLSGVY-PHGTYEGEIIFEG---EELQASNIRDTER 81
Query: 1089 MGVV--SQEPVLFSD-TIRANI---AEMANANGFISG----------LQE-GYDTLVGER 1131
G+ QE L + ++ NI E+ G + L + D
Sbjct: 82 AGIAIIHQELALVKELSVLENIFLGNEITP-GGIMDYDAMYLRAQKLLAQLKLDINPATP 140
Query: 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
L GQ+Q V IA+A+ K+ ++L+LDE T++L ESE
Sbjct: 141 VGNLGLGQQQLVEIAKALNKQARLLILDEPTASL-TESE 178
|
Length = 506 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (153), Expect = 9e-10
Identities = 55/197 (27%), Positives = 83/197 (42%), Gaps = 43/197 (21%)
Query: 403 LNGFCLLIPNGTIAA-----LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457
L F L + G I +VG +G GK+T L+ P GEV + LK
Sbjct: 350 LGDFSLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE--------LK 401
Query: 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIK-------NLP 510
+S +P + T E++ + S + K L
Sbjct: 402 --------ISYKPQYIKP---------DYDGTVEDLLRSITDDLGSSYYKSEIIKPLQLE 444
Query: 511 QGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570
+ LD NV + LSGG+ QRVAIA + +D + LLDE ++ LD E V +A+ R+
Sbjct: 445 RLLDKNVKD----LSGGELQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIA 500
Query: 571 INR--TTVIVSHRLSLI 585
R T ++V H + +I
Sbjct: 501 EEREATALVVDHDIYMI 517
|
Length = 590 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 72/261 (27%), Positives = 103/261 (39%), Gaps = 47/261 (18%)
Query: 396 ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVI-SLIQRFYDPQA-------GEVLID 447
AR IL L I G + AL+G +G+GKST++ +L A G+V ++
Sbjct: 10 ARRHRAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLN 69
Query: 448 GVNLKEF---QLKWIREKIGLVSQ--------EPVLLSSSIRDNIAYGKTHATKEEIQAA 496
G L +L +R + +Q E VLL A TH E A
Sbjct: 70 GEPLAAIDAPRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQA 129
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM---------IKDPRILLL 547
A A VG LSGG+ RV AR + + PR LLL
Sbjct: 130 LALAGA-----------TALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLL 178
Query: 548 DEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGT 604
DE T+ALD + + + R+ N + + H +L R+A+ IA++ G IV G
Sbjct: 179 DEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238
Query: 605 -----HSELLENPYGAYNRLI 620
+ YG RL+
Sbjct: 239 PADVLTPAHIARCYGFAVRLV 259
|
Length = 272 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.3 bits (152), Expect = 1e-09
Identities = 67/216 (31%), Positives = 107/216 (49%), Gaps = 31/216 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++LK ++ ++P + L+G L + G + ALVG +G+GKST++ ++ Y AG +
Sbjct: 5 LQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSI 61
Query: 445 LIDGVNLKEFQLKWIREK----IGLVSQEPVLLSS-SIRDNIAYGKTHATK-EEIQAAAE 498
L G KE + IG++ QE L+ +I +NI G+ + I
Sbjct: 62 LYLG---KEVTFNGPKSSQEAGIGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKM 118
Query: 499 AANASHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL-D 555
A A + NL D VGE LS G++Q V IA+ + + +++++DE T AL D
Sbjct: 119 YAEADKLLARLNLRFSSDKLVGE----LSIGEQQMVEIAKVLSFESKVIIMDEPTDALTD 174
Query: 556 SESGRMVQEALDRVMIN------RTTVIVSHRLSLI 585
+E+ E+L RV I R V +SHRL I
Sbjct: 175 TET-----ESLFRV-IRELKSQGRGIVYISHRLKEI 204
|
Length = 501 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 1e-09
Identities = 61/213 (28%), Positives = 102/213 (47%), Gaps = 34/213 (15%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK----IGLVSQ 468
G + AL+G +G+GKST++ ++ Y P AG +LIDG +E + + ++ Q
Sbjct: 30 GQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDG---QEMRFASTTAALAAGVAIIYQ 86
Query: 469 E----PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD--TNVGEHGI 522
E P + ++ +N+ G+ + A +++L +D T +
Sbjct: 87 ELHLVPEM---TVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDIDPDTPLKY--- 140
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRT----TVI- 577
LS GQ+Q V IA+A+ ++ R++ DE TS+L S R + E L RV I VI
Sbjct: 141 -LSIGQRQMVEIAKALARNARVIAFDEPTSSL---SAREI-EQLFRV-IRELRAEGRVIL 194
Query: 578 -VSHRLSLI-RNANIIAVIQQGKIVEKGTHSEL 608
VSHR+ I + I V + G+ V T ++
Sbjct: 195 YVSHRMEEIFALCDAITVFKDGRYVA--TFDDM 225
|
Length = 501 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 62.1 bits (152), Expect = 1e-09
Identities = 59/213 (27%), Positives = 96/213 (45%), Gaps = 64/213 (30%)
Query: 387 LKDVNFSYPARPDEQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
+ V+ P P +QIL L P I ++G +G+GKST++ ++ AG
Sbjct: 9 MNRVSKVVP--PKKQILKDISLSFFPGAKIG-VLGLNGAGKSTLLRIM-------AG--- 55
Query: 446 IDGVNLKEFQLK-WIRE--KIGLVSQEPVL-LSSSIRDNI-------------------A 482
+D KEF+ + K+G + QEP L ++R+N+ A
Sbjct: 56 VD----KEFEGEARPAPGIKVGYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAA 111
Query: 483 YG-------KTHATKEEIQAAAEAANASHFIKN----------LPQGLDTNVGEHGIQLS 525
Y A + E+Q +AA+A + + P D V +LS
Sbjct: 112 YAEPDADFDALAAEQGELQEIIDAADA-WDLDSQLEIAMDALRCPPW-DAKVT----KLS 165
Query: 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
GG+++RVA+ R +++ P +LLLDE T+ LD+ES
Sbjct: 166 GGERRRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 59.7 bits (145), Expect = 1e-09
Identities = 60/221 (27%), Positives = 109/221 (49%), Gaps = 19/221 (8%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAGEVLIDGVNLKEFQL 456
+ +IL G L I G I A++G +GSGKST+ +I Y G++L G ++ + +
Sbjct: 19 ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEP 78
Query: 457 KWIREKIG--LVSQEPVLL---SSSIRDNIAYG--KTHATKEEIQAAA--EAANASHFIK 507
+ R +G L Q P+ + S++ +AY + E+ E N +
Sbjct: 79 E-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLV 137
Query: 508 NL-PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL 566
+ P L NV E SGG+K+R I + + D + +LDE S LD ++ +++ E +
Sbjct: 138 GMDPSFLSRNVNE---GFSGGEKKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGI 194
Query: 567 DRVM-INRTTVIVSH--RLSLIRNANIIAVIQQGKIVEKGT 604
+++M + ++++H RL + + V+Q GKI++ G
Sbjct: 195 NKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
|
Length = 252 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 2e-09
Identities = 50/196 (25%), Positives = 98/196 (50%), Gaps = 15/196 (7%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460
L L + G I AL+G +G+GKST++ ++ ++P G + I+ +N + K
Sbjct: 19 HALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAA 78
Query: 461 E-KIGLVSQE-PVLLSSSIRDNIAYGKTHATKE-------EIQAAAEAANASHFIKNLPQ 511
+ IG++ QE V+ ++ +N+ G+ H TK+ + + A L
Sbjct: 79 QLGIGIIYQELSVIDELTVLENLYIGR-HLTKKVCGVNIIDWREMRVRAAMMLLRVGLKV 137
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI 571
LD V LS KQ + IA+ ++ D +++++DE TS+L ++ + ++++
Sbjct: 138 DLDEKVAN----LSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRK 193
Query: 572 NRTTVI-VSHRLSLIR 586
T ++ +SH+L+ IR
Sbjct: 194 EGTAIVYISHKLAEIR 209
|
Length = 510 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 2e-09
Identities = 55/215 (25%), Positives = 96/215 (44%), Gaps = 29/215 (13%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGLVSQEPV 471
G I LVG +G+GKST+++ + +G + G L+ + + R + L Q+
Sbjct: 25 GEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSATELARHRAYLSQQQTP 83
Query: 472 LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531
+ + Y H Q + + LD +G QLSGG+ QR
Sbjct: 84 PFAMPV---WHYLTLH------QPDKTRTELLNDVAGA-LALDDKLGRSTNQLSGGEWQR 133
Query: 532 VAIARAMIK-------DPRILLLDEATSALDSESGRMVQEALDRVMIN-----RTTVIVS 579
V +A +++ ++LLLDE ++LD Q ALDR++ V+ S
Sbjct: 134 VRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQ----QSALDRLLSALCQQGLAIVMSS 189
Query: 580 HRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPY 613
H L+ +R+A+ ++++GK++ G E+L P
Sbjct: 190 HDLNHTLRHAHRAWLLKRGKLLASGRREEVLTPPV 224
|
Length = 248 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 58.8 bits (143), Expect = 2e-09
Identities = 40/156 (25%), Positives = 68/156 (43%), Gaps = 22/156 (14%)
Query: 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHITLD 1073
R I + +D + PG+ + ++G GSG ST ++ G I +
Sbjct: 11 FTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYN 70
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANI--AEMANANGFISGLQEGYDTLVGE 1130
G+ ++ K+ + + VS+E V F T+R + A N F+ G+
Sbjct: 71 GIPYKEFAEKYPGEII-YVSEEDVHFPTLTVRETLDFALRCKGNEFVRGI---------- 119
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
SGG+++RV+IA A+V +L D +T LD
Sbjct: 120 -----SGGERKRVSIAEALVSRASVLCWDNSTRGLD 150
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-09
Identities = 48/183 (26%), Positives = 85/183 (46%), Gaps = 19/183 (10%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWLRQ 1087
DL +T P + G +G GKS+++ ++ PSSG+I I + ++
Sbjct: 18 DLSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGH 77
Query: 1088 QMGVVSQEPVLFSDTIRANI---AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144
+G+ + V + + I AE A L + L+ E+ LS G ++ VA
Sbjct: 78 NLGLKLEMTVFENLKFWSEIYNSAETLYAAIHYFKLHD----LLDEKCYSLSSGMQKIVA 133
Query: 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT-----LVVAHRLSTIKNA 1199
IAR I + + LLDE + L E+ +D L+ ++V + L+ +H S+IK+A
Sbjct: 134 IARLIACQSDLWLLDEVETNLSKEN----RDLLNNLIVMKANSGGIVLLSSHLESSIKSA 189
Query: 1200 HLI 1202
++
Sbjct: 190 QIL 192
|
Length = 195 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-09
Identities = 40/171 (23%), Positives = 77/171 (45%), Gaps = 31/171 (18%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL------Q 1081
+F L T+ G+ + + G +G+GK++++ +L P +G + G I++
Sbjct: 16 LFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDEYHQD 75
Query: 1082 VKWLRQQMGVVS----QEPVLFS---------DTIRANIAEMANANGFISGLQEGYDTLV 1128
+ +L Q G+ + E + F + + +A++ GL D V
Sbjct: 76 LLYLGHQPGIKTELTALENLRFYQRLHGPGDDEALWEALAQV--------GLAGFEDVPV 127
Query: 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
QLS GQ++RVA+AR + + +LDE +A+D + ++ L Q
Sbjct: 128 R----QLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQ 174
|
Length = 204 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 60.6 bits (148), Expect = 3e-09
Identities = 49/229 (21%), Positives = 99/229 (43%), Gaps = 32/229 (13%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
EV+ L V R + +D+ + G+ + + G +G+G+S ++ + P+SG
Sbjct: 259 EVEDLSVK---DRRG-VTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGR 314
Query: 1070 ITLDGVEI-QKLQVKWL-----------RQQMGVVSQEPVLFSDTIRANIAEMANANGFI 1117
I L+G ++ +L + R G+V + + + + + + GF+
Sbjct: 315 ILLNGKDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFL 374
Query: 1118 S---------GLQEGYDTLVGERGV---QLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
L E +D LSGG +Q++ +AR + + P +L+ + T L
Sbjct: 375 DRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRPDLLIAAQPTRGL 434
Query: 1166 DIESERVVQDALDQVMVDRTT--LVVAHRLSTIKN-AHLIAVVSQGMIV 1211
D+ + + + L + + D L+++ L I + IAV+ +G IV
Sbjct: 435 DVGAIEFIHERLLE-LRDAGKAVLLISEDLDEILELSDRIAVIYEGRIV 482
|
Length = 501 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.1 bits (143), Expect = 3e-09
Identities = 68/255 (26%), Positives = 119/255 (46%), Gaps = 34/255 (13%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQE 469
+P G+IAALVG +GSGKST+ + F +G++ I G ++ L+ + + V Q
Sbjct: 30 VPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQ-ALQ--KNLVAYVPQS 86
Query: 470 -------PVLLSSSIRDNIAYGK------THATKEEIQAAAEAANASHFIKNLPQGLDTN 516
PVL + D + G+ K+ + AA A ++ +
Sbjct: 87 EEVDWSFPVL----VEDVVMMGRYGHMGWLRRAKKRDRQIVTAALAR---VDMVEFRHRQ 139
Query: 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTV 576
+GE LSGGQK+RV +ARA+ + +++LLDE + +D ++ + L + T+
Sbjct: 140 IGE----LSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTM 195
Query: 577 IVS-HRLSLIRNANIIAVIQQGKIVEKGTHSELL--ENPYGAYNRLIRLQETCKESEKSA 633
+VS H L + V+ +G ++ G EN A++ ++R SE+S
Sbjct: 196 LVSTHNLGSVTEFCDYTVMVKGTVLASGPTETTFTAENLELAFSGVLR-HVALNGSEESI 254
Query: 634 VNNSDSDNQPFASPK 648
+ + D +PF S +
Sbjct: 255 ITD---DERPFISHR 266
|
Length = 272 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.1 bits (146), Expect = 3e-09
Identities = 55/197 (27%), Positives = 90/197 (45%), Gaps = 55/197 (27%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS-TVISLLQRFYDPSSG 1068
+V+ LRV+F P V DL ++ G+T+ +VGESGSGKS T +L+ ++G
Sbjct: 14 DVKDLRVTFSTPDGDVTAV-NDLNFSLRAGETLGIVGESGSGKSQTAFALMGLL--AANG 70
Query: 1069 HIT----LDGVEIQKLQVKWLR----QQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120
I +G EI L K L +Q+ ++ Q+P M + N ++
Sbjct: 71 RIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP-------------MTSLNPYMRVG 117
Query: 1121 QEGYDTLVGERGV------------------------------QLSGGQKQRVAIARAIV 1150
++ + L+ +G+ + SGG +QRV IA A++
Sbjct: 118 EQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALL 177
Query: 1151 KEPKILLLDEATSALDI 1167
PK+L+ DE T+ALD+
Sbjct: 178 CRPKLLIADEPTTALDV 194
|
Length = 330 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 5e-09
Identities = 59/208 (28%), Positives = 104/208 (50%), Gaps = 34/208 (16%)
Query: 1036 IPPGKTIALVGESGSGKSTVISLLQ-RFYDPS-SGHITLDGVEIQKLQVKWLRQQMGVVS 1093
PG+ +A++G SGSGKST+++ L R + +G I + + K +K + G V+
Sbjct: 91 ASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTKQILK----RTGFVT 146
Query: 1094 QEPVLFSD-TIRANIA---------------EMANANGFIS--GLQEGYDTLVGE---RG 1132
Q+ +L+ T+R + ++ A IS GL + +T++G RG
Sbjct: 147 QDDILYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRG 206
Query: 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE-RVVQDALDQVMVDRTTLVVAH 1191
+ SGG+++RV+IA ++ P +L+LDE TS LD + R+V +T + H
Sbjct: 207 I--SGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMH 264
Query: 1192 RLST--IKNAHLIAVVSQG--MIVEKGS 1215
+ S+ + + V+S+G + KGS
Sbjct: 265 QPSSRVYQMFDSVLVLSEGRCLFFGKGS 292
|
Length = 659 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.9 bits (138), Expect = 5e-09
Identities = 48/186 (25%), Positives = 77/186 (41%), Gaps = 42/186 (22%)
Query: 388 KDVNFSYP-ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVIS-LIQRFYDPQ-AGEV 444
K++N++ P Q+LN + GT+ AL+G SG+GK+T++ L R GE+
Sbjct: 7 KNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEI 66
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSS-IRDNIAYGKTHATKEEIQAAAEAANAS 503
LI+G L K + G V Q+ V + +R+ + A
Sbjct: 67 LINGRPLD----KNFQRSTGYVEQQDVHSPNLTVREAL----------RFSALLRG---- 108
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
LS Q++R+ I + P IL LDE TS LDS++ +
Sbjct: 109 --------------------LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIV 148
Query: 564 EALDRV 569
L ++
Sbjct: 149 RFLKKL 154
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.5 bits (144), Expect = 6e-09
Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 27/206 (13%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS--GHITLDGVEIQKLQVKWL-RQQ 1088
+ L + PG+ + L GE+G+GKST++ +L Y + G I G ++ ++ R
Sbjct: 20 IDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERAG 79
Query: 1089 MGVVSQEPVLFSD-TIRANIAEMANA---NGFISGLQEGY------------DTLVGERG 1132
+ ++ QE L + ++ NI + N G Y D R
Sbjct: 80 IVIIHQELTLVPELSVAENIF-LGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRP 138
Query: 1133 V-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV-VA 1190
V GGQ+Q V IA+A+ K+ ++L+LDE +S+L + ++ D + + V ++
Sbjct: 139 VGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYIS 198
Query: 1191 HRLSTIKNAHLIAVVSQGMIVEKGSH 1216
H+L+ +K AV ++ G H
Sbjct: 199 HKLNEVK-----AVCDTICVIRDGQH 219
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 8e-09
Identities = 52/173 (30%), Positives = 82/173 (47%), Gaps = 28/173 (16%)
Query: 385 IELKDVNFSYPARPDEQILNGFC-----LLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
+EL++V F+Y NGF L I G + L+G +GSGKST+ L+ Y P
Sbjct: 323 LELRNVTFAYQD-------NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQP 375
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEA 499
Q+GE+L+DG + Q + R+ L S+ D + E + A A
Sbjct: 376 QSGEILLDGKPVTAEQPEDYRK----------LFSAVFTD--FHLFDQLLGPEGKPANPA 423
Query: 500 ANASHFIKNLPQGLDTNVGEHGI---QLSGGQKQRVAIARAMIKDPRILLLDE 549
+++ L + + I +LS GQK+R+A+ A+ ++ ILLLDE
Sbjct: 424 LVEK-WLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAEERDILLLDE 475
|
Length = 547 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 57.3 bits (139), Expect = 8e-09
Identities = 58/242 (23%), Positives = 105/242 (43%), Gaps = 33/242 (13%)
Query: 1003 TLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--Q 1060
+ E++ L S E+ + L L+I G+ A++G +GSGKST+ ++
Sbjct: 2 NKNKPILEIKNLHASVN-----ENEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGH 56
Query: 1061 RFYDPSSGHITLDGVEIQKLQVKWLRQQMGV--VSQEPVLFSDTIRANIAEMA-NANGFI 1117
Y G I G I L+ + R +G+ Q P+ A+ +A N+
Sbjct: 57 PAYKILEGDILFKGESILDLEPE-ERAHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRKF 115
Query: 1118 SGLQE-----------------GYDTLVGERGVQ--LSGGQKQRVAIARAIVKEPKILLL 1158
GL E G D R V SGG+K+R I + + + ++ +L
Sbjct: 116 QGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMALLDSELAIL 175
Query: 1159 DEATSALDIESERVVQDALDQVMVDRTTLV-VAH--RLSTIKNAHLIAVVSQGMIVEKGS 1215
DE S LDI++ +++ + ++++M +++ + H RL + V+ G I++ G
Sbjct: 176 DETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTGD 235
Query: 1216 HE 1217
E
Sbjct: 236 AE 237
|
Length = 252 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 58.7 bits (142), Expect = 1e-08
Identities = 29/90 (32%), Positives = 55/90 (61%), Gaps = 3/90 (3%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHR 1192
LSGG+KQRV +AR + KEP + L DE T LD ++ ++V +AL++ + + ++ +H
Sbjct: 169 LSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHW 228
Query: 1193 LSTIKNAHLIAV-VSQGMIVEKGSHESLIS 1221
I++ A+ + G I E+G+ + +++
Sbjct: 229 PEVIEDLSDKAIWLENGEIKEEGTPDEVVA 258
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213200 cd03233, ABCG_PDR_domain1, First domain of the pleiotropic drug resistance-like subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 56.1 bits (136), Expect = 1e-08
Identities = 49/206 (23%), Positives = 84/206 (40%), Gaps = 51/206 (24%)
Query: 397 RPDEQILNGFCLLIPNGTIAALVGTSGSGKST---VISLIQRFYDPQAGEVLIDGVNLKE 453
R IL F ++ G + ++G GSG ST ++ G++ +G+ KE
Sbjct: 17 RSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKE 76
Query: 454 FQLKWIREKIGLVSQE----PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
F K+ E I VS+E P L +E + A + F++
Sbjct: 77 FAEKYPGEII-YVSEEDVHFPTLT---------------VRETLDFALRC-KGNEFVR-- 117
Query: 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV 569
GI SGG+++RV+IA A++ +L D +T LDS + AL+ +
Sbjct: 118 -----------GI--SGGERKRVSIAEALVSRASVLCWDNSTRGLDSST------ALEIL 158
Query: 570 MINRTTVIVSHRLSLIRNANIIAVIQ 595
RT ++ L + +++ Q
Sbjct: 159 KCIRT---MADVL---KTTTFVSLYQ 178
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 202 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 1e-08
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI--VSH 580
+L+ G+ Q+V IA A+ PR+L+ DE T+A++ + + L R+ N T I +SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 581 RLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR-LIR 621
L ++ A+ I V+ G+ VE EL+ P+ Y + LIR
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 54.3 bits (130), Expect = 2e-08
Identities = 39/188 (20%), Positives = 65/188 (34%), Gaps = 61/188 (32%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL-IDGVNLKEFQLKWIREKIGLVSQEPV 471
G + +VG GSGK+T+ + R P G V+ IDG ++ E L + I
Sbjct: 2 GEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLII-------- 53
Query: 472 LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531
VG SG + R
Sbjct: 54 ---------------------------------------------VGGKKASGSGELRLR 68
Query: 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-------NRTTVIVSHRLSL 584
+A+A A P +L+LDE TS LD+E ++ + ++ N T ++ ++
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
Query: 585 IRNANIIA 592
+ A +
Sbjct: 129 LGPALLRR 136
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-08
Identities = 47/157 (29%), Positives = 80/157 (50%), Gaps = 12/157 (7%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
+ DL +PPG + ++G +G+GKST+ ++ P SG I + G ++ V R
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI-GETVKLAYVDQSRD 395
Query: 1088 QMG---VVSQEPVLFSDTIRANIAEMANANGFISGLQ-EGYD--TLVGERGVQLSGGQKQ 1141
+ V +E D I+ E+ + ++ +G D VG QLSGG++
Sbjct: 396 ALDPNKTVWEEISGGLDIIQLGKREV-PSRAYVGRFNFKGSDQQKKVG----QLSGGERN 450
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALD 1178
RV +A+ + +LLLDE T+ LD+E+ R +++AL
Sbjct: 451 RVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALL 487
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (142), Expect = 2e-08
Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 27/188 (14%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
I G+ I +VG +G GK+T LL P G + + L++ + Q +
Sbjct: 361 EIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE------LKISYKPQYIKPDYD 414
Query: 1095 EPVLFSDTIRANIAEMANANGFIS------GLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148
V D +R +I + ++ + S L+ D V + LSGG+ QRVAIA
Sbjct: 415 GTV--EDLLR-SITDDLGSSYYKSEIIKPLQLERLLDKNVKD----LSGGELQRVAIAAC 467
Query: 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNAHLIAVVS 1206
+ ++ + LLDE ++ LD+E V A+ ++ +R T LVV H + +I +S
Sbjct: 468 LSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIY------MIDYIS 521
Query: 1207 QGMIVEKG 1214
++V +G
Sbjct: 522 DRLMVFEG 529
|
Length = 590 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (141), Expect = 2e-08
Identities = 52/184 (28%), Positives = 87/184 (47%), Gaps = 29/184 (15%)
Query: 1034 LTIP-PGKTIALVGESGSGKSTVISLLQ--------RFYDPSSGHITLD---GVEIQ--- 1078
L IP GK ++G +G GK+T + +L + + S L G E+Q
Sbjct: 93 LPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYF 152
Query: 1079 -KLQVKWLRQ----QMGVVSQEPVLFSDTIRANIAEMANANGFISGLQE--GYDTLVGER 1131
KL ++ Q V P +F +R + + + G + + E G + ++ +R
Sbjct: 153 KKLYNGEIKVVHKPQY--VDLIPKVFKGKVR-ELLKKVDERGKLDEVVERLGLENIL-DR 208
Query: 1132 GV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV-VQDALDQVMVDRTTLVV 1189
+ +LSGG+ QRVAIA A++++ DE TS LDI +R+ V + ++ + LVV
Sbjct: 209 DISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIR-QRLNVARLIRELAEGKYVLVV 267
Query: 1190 AHRL 1193
H L
Sbjct: 268 EHDL 271
|
Length = 590 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.6 bits (142), Expect = 2e-08
Identities = 49/162 (30%), Positives = 83/162 (51%), Gaps = 13/162 (8%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL-DGVEI---QKLQVKWLRQQM 1089
L + PG I L+G +G+GKST+I LL P SG I L G+++ + Q+++LR
Sbjct: 333 LNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQHQLEFLRADE 392
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
+ L + + + GF G + V E + SGG+K R+ +A +
Sbjct: 393 SPLQHLARLAPQELEQKLRDYLGGFGF-QGDK------VTEETRRFSGGEKARLVLALIV 445
Query: 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191
+ P +LLLDE T+ LD++ + + +AL + + +VV+H
Sbjct: 446 WQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEGALVVVSH 485
|
Length = 638 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 58.3 bits (141), Expect = 2e-08
Identities = 60/203 (29%), Positives = 90/203 (44%), Gaps = 50/203 (24%)
Query: 399 DEQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LIDGVNLKEF-- 454
D IL+ L L+P I L+G +G+GKST+I L+ P +GE+ L G+ L F
Sbjct: 324 DRIILDSIKLNLVPGSRIG-LLGRNGAGKSTLIKLLAGELAPVSGEIGLAKGIKLGYFAQ 382
Query: 455 -QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL 513
QL+++R A + +Q A A + L Q L
Sbjct: 383 HQLEFLR---------------------------ADESPLQHLARLAP-----QELEQKL 410
Query: 514 DTNVGEHGIQ----------LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
+G G Q SGG+K R+ +A + + P +LLLDE T+ LD + + +
Sbjct: 411 RDYLGGFGFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALT 470
Query: 564 EALDRVMINRTTVIVSHRLSLIR 586
EAL + V+VSH L+R
Sbjct: 471 EAL--IDFEGALVVVSHDRHLLR 491
|
Length = 638 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 58.0 bits (141), Expect = 2e-08
Identities = 49/179 (27%), Positives = 74/179 (41%), Gaps = 54/179 (30%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI---QKLQVKWLRQQ-- 1088
L I + + LVG +G+GKST++ +L +G + LD I Q L V L+Q
Sbjct: 24 LHIEDNERVCLVGRNGAGKSTLMKIL-------NGEVLLDDGRIIYEQDLIVARLQQDPP 76
Query: 1089 ------------MGVVSQEPVL----------FSDTIRANIAEMA-------NANG--FI 1117
G+ Q L +D N+ E+A + N
Sbjct: 77 RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLE 136
Query: 1118 SGLQE-------GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ + E D + LSGG ++ A+ RA+V P +LLLDE T+ LDIE+
Sbjct: 137 NRINEVLAQLGLDPDAALSS----LSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIET 191
|
Length = 635 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (138), Expect = 4e-08
Identities = 43/165 (26%), Positives = 72/165 (43%), Gaps = 29/165 (17%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLR 1086
RD+ T+ G+ + + G G+G++ + L SSG I LDG ++ ++
Sbjct: 274 KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIK 333
Query: 1087 QQMGVVS---QEPVLFSD-TIRANI-----------------AEMANANGFISGLQE--- 1122
+ V + L D +I NI E A A +I L+
Sbjct: 334 AGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTP 393
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+ +G LSGG +Q+V +AR + +PK+L+LDE T +D+
Sbjct: 394 SPEQPIGT----LSGGNQQKVVLARWLATDPKVLILDEPTRGIDV 434
|
Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 7e-08
Identities = 52/209 (24%), Positives = 85/209 (40%), Gaps = 75/209 (35%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL-D 1073
RVS P P ++ +D+ L+ PG I ++G +G+GKST++ ++ G
Sbjct: 11 RVSKVVP--PKKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP 68
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEPVL-FSDTIRANI------------------AEMANAN 1114
G+++ G + QEP L T+R N+ A A +
Sbjct: 69 GIKV------------GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPD 116
Query: 1115 GFISGLQEGYDTLVGERG-VQ---------------------------------LSGGQK 1140
+D L E+G +Q LSGG++
Sbjct: 117 -------ADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGER 169
Query: 1141 QRVAIARAIVKEPKILLLDEATSALDIES 1169
+RVA+ R ++++P +LLLDE T+ LD ES
Sbjct: 170 RRVALCRLLLEKPDMLLLDEPTNHLDAES 198
|
Length = 556 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 8e-08
Identities = 46/185 (24%), Positives = 81/185 (43%), Gaps = 26/185 (14%)
Query: 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWIREKIGLVSQEP 470
I + G +G GKS+++ +I P +G + N+ +I +GL
Sbjct: 27 AITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIAKPYCTYIGHNLGLK---- 82
Query: 471 VLLSSSIRDNIAY-GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529
L ++ +N+ + + + + E + AA H+ K L + E LS G +
Sbjct: 83 --LEMTVFENLKFWSEIYNSAETLYAAI------HYFK-----LHDLLDEKCYSLSSGMQ 129
Query: 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIV---SHRLSLIR 586
+ VAIAR + + LLDE + L E+ ++ + VM + IV SH S I+
Sbjct: 130 KIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI--VMKANSGGIVLLSSHLESSIK 187
Query: 587 NANII 591
+A I+
Sbjct: 188 SAQIL 192
|
Length = 195 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 54.1 bits (130), Expect = 8e-08
Identities = 46/159 (28%), Positives = 74/159 (46%), Gaps = 19/159 (11%)
Query: 1022 TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ 1081
+R VF L + G+ + + G++G+GK+T++ +L SG I +DG +
Sbjct: 20 SRNEEPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRGD 79
Query: 1082 VKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF-----------ISGLQEGYDTLVG 1129
+ M + P L +D + N+ + +G I GL DTLV
Sbjct: 80 RS---RFMAYLGHLPGLKADLSTLENLHFLCGLHGRRAKQMPGSALAIVGLAGYEDTLVR 136
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
QLS GQK+R+A+AR + + LLDE + LD+E
Sbjct: 137 ----QLSAGQKKRLALARLWLSPAPLWLLDEPYANLDLE 171
|
Length = 214 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 56.0 bits (135), Expect = 9e-08
Identities = 46/193 (23%), Positives = 82/193 (42%), Gaps = 38/193 (19%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRF--------YDPQAGEVLIDGVNLKEFQLKWI 459
L I G + A+VG SG+GK+T++ +I Y P +G+V + + + +
Sbjct: 404 LEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKV-----EVPKNTVSAL 458
Query: 460 REKIGLVSQEPVLLSSSIRDNIA--YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV 517
EP +I +++ G +A EI A ++A + + +
Sbjct: 459 IPG----EYEPEFGEVTILEHLRSKTGDLNAA-VEILNRAGLSDAVLYRRKFSE------ 507
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV----QEALDRVMINR 573
LS GQK+R +A+ + + P +LL+DE + LD + V E I
Sbjct: 508 ------LSTGQKERAKLAKLLAERPNVLLIDEFAAHLDELTAVRVARKISELAREAGI-- 559
Query: 574 TTVIVSHRLSLIR 586
T ++V+HR +
Sbjct: 560 TLIVVTHRPEVGN 572
|
Length = 593 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 9e-08
Identities = 44/193 (22%), Positives = 72/193 (37%), Gaps = 51/193 (26%)
Query: 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQE 1095
+ G+ I +VG +G+GK+T + +L P+ + DG+ +
Sbjct: 22 VKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGIT---------------PVYK 66
Query: 1096 PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155
P + + LSGG+ QRVAIA A+++
Sbjct: 67 P----------------------------------QYIDLSGGELQRVAIAAALLRNATF 92
Query: 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK 1213
L DE ++ LDIE A+ ++ +T LVV H L+ + V +G
Sbjct: 93 YLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGVY 152
Query: 1214 GSHESLISTKNGI 1226
G T+ GI
Sbjct: 153 GIASQPKGTREGI 165
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 1e-07
Identities = 72/303 (23%), Positives = 118/303 (38%), Gaps = 86/303 (28%)
Query: 915 GIGFGLSFFFFFM-AYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASD 973
GI G + FFFF+ F GAK K VFR
Sbjct: 673 GIIIGFTVFFFFVYILLTEFNKGAKQ---KGEIL--VFR---------------RGSLKR 712
Query: 974 ASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLC 1033
A KA ++AS I+ + S++ T + ++V E + + I +R+L
Sbjct: 713 AKKAGETSASNKNDIEAGEVLGSTDLTDES-DDVNDEKDM-----EKESGEDIFHWRNLT 766
Query: 1034 LTIP-----------------PGKTIALVGESGSGKSTVISLL-QRF------------- 1062
+ PG AL+G SG+GK+T++++L +R
Sbjct: 767 YEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVN 826
Query: 1063 -------YDPSSGHITLDGVEIQKLQVK-------WLRQQMGVVSQEPVLFSDTIRANIA 1108
+ S G++ + + V+ +LRQ V E + + + + +
Sbjct: 827 GRPLDSSFQRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEV-IKLL 885
Query: 1109 EMANANGFISGLQEGY-DTLVGERGVQLSGGQKQRVAIARAIVKEPKILL-LDEATSALD 1166
EM E Y D +VG G L+ Q++R+ I +V +PK+LL LDE TS LD
Sbjct: 886 EM-----------ESYADAVVGVPGEGLNVEQRKRLTIGVELVAKPKLLLFLDEPTSGLD 934
Query: 1167 IES 1169
++
Sbjct: 935 SQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 55.9 bits (135), Expect = 1e-07
Identities = 53/226 (23%), Positives = 95/226 (42%), Gaps = 45/226 (19%)
Query: 374 NGKKLDDI-----RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKST 428
NG K ++I GD+ ++ ++F +P+G + G +G GKS+
Sbjct: 450 NGIKFENIPLVTPNGDVLIESLSFE----------------VPSGNNLLICGPNGCGKSS 493
Query: 429 VISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA 488
+ ++ + G + + K+ V Q P + ++RD I Y +
Sbjct: 494 LFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDS-- 540
Query: 489 TKEEIQAAAEAANASHFIKNLPQG--LDTNVGEHGIQ-----LSGGQKQRVAIARAMIKD 541
+++ + + + N+ L+ G +Q LSGG+KQR+A+AR
Sbjct: 541 SEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQRIAMARLFYHK 600
Query: 542 PRILLLDEATSALDSE-SGRMVQEALDRVMINRTTVIVSHRLSLIR 586
P+ +LDE TSA+ + G M + + T VSHR SL +
Sbjct: 601 PQFAILDECTSAVSVDVEGYMYRLCRE---FGITLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 54.8 bits (132), Expect = 1e-07
Identities = 35/103 (33%), Positives = 57/103 (55%), Gaps = 4/103 (3%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVI--VSH 580
+L+ G+ Q+V IA A+ PR+L+ DE T++++ + + L R+ N T I +SH
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISH 217
Query: 581 RLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR-LIR 621
L +I A+ I V+ G+ VE EL+ P+ Y + LIR
Sbjct: 218 DLQMISQWADKINVLYCGQTVESAPSEELVTMPHHPYTQALIR 260
|
Length = 330 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 55.8 bits (134), Expect = 2e-07
Identities = 51/204 (25%), Positives = 98/204 (48%), Gaps = 26/204 (12%)
Query: 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091
LC+ + PG+ L+G +G+GK+T +L +SG T+ G I + + Q MG
Sbjct: 1958 LCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILT-NISDVHQNMGY 2016
Query: 1092 VSQ-----------EPVLFSDTIRA----NIAEMANANGFISGLQEGYDTLVGERGVQLS 1136
Q E + +R I ++AN + GL D L G S
Sbjct: 2017 CPQFDAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADRLAG----TYS 2072
Query: 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLST 1195
GG K++++ A A++ P ++LLDE T+ +D ++ R++ + + ++ + R ++ +H +
Sbjct: 2073 GGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEE 2132
Query: 1196 IKNAHLIAVVSQGMIVEKGSHESL 1219
+ A+ ++ I+ KG+ + L
Sbjct: 2133 CE-----ALCTRLAIMVKGAFQCL 2151
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 55.4 bits (134), Expect = 2e-07
Identities = 53/207 (25%), Positives = 88/207 (42%), Gaps = 46/207 (22%)
Query: 404 NGFCLL---IP-NGTIAALVGTSGSGKSTVISLIQ--------RFYDPQAGEVLIDGVNL 451
NGF L P G + ++G +G GKST + ++ R+ DP + + +I
Sbjct: 87 NGFKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSWDEVIKRFRG 146
Query: 452 KEFQ--LKWIRE-------KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
E Q K + E K V P ++ GK E ++ E
Sbjct: 147 TELQNYFKKLYEGELRAVHKPQYVDLIPKVVK---------GKV---GELLKKVDERGKF 194
Query: 503 SHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE--- 557
++ L LD +V +LSGG+ QRVAIA A+++D + DE +S LD
Sbjct: 195 DEVVERLGLENVLDRDVS----ELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRL 250
Query: 558 -SGRMVQEALDRVMINRTTVIVSHRLS 583
+ R+++E + + ++V H L+
Sbjct: 251 NAARVIRELAED---GKYVIVVEHDLA 274
|
Length = 591 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 76/269 (28%), Positives = 117/269 (43%), Gaps = 61/269 (22%)
Query: 374 NGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
G +L D IE ++++ + D+ +++ +P G I ++G +G+GKST+ +I
Sbjct: 314 PGPRLGDKV--IEAENLSKGFG---DKLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMI 368
Query: 434 QRFYDPQAGEVLI-DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEE 492
P +G + I + V K+ V Q RD + KT EE
Sbjct: 369 TGQEQPDSGTIKIGETV------------KLAYVDQS--------RDALDPNKT--VWEE 406
Query: 493 IQAAAEA-----------ANASHFIKNLPQGLD--TNVGEHGIQLSGGQKQRVAIARAMI 539
I + A F N +G D VG QLSGG++ RV +A+ +
Sbjct: 407 ISGGLDIIQLGKREVPSRAYVGRF--NF-KGSDQQKKVG----QLSGGERNRVHLAKTLK 459
Query: 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH-RLSLIRNA-NIIAVIQQG 597
+LLLDE T+ LD E+ R ++EAL V++SH R L R A +I+A
Sbjct: 460 SGGNVLLLDEPTNDLDVETLRALEEALLE--FAGCAVVISHDRWFLDRIATHILA----- 512
Query: 598 KIVEKGTHSELLENPYGAY--NRLIRLQE 624
E +H E E Y Y ++ RL E
Sbjct: 513 --FEGDSHVEWFEGNYSEYEEDKKRRLGE 539
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 54/201 (26%), Positives = 86/201 (42%), Gaps = 13/201 (6%)
Query: 1034 LTIPPGKTIALVGESGSGKSTV-------ISLLQRFYDPSSGHITLDGVE-IQKL-QVKW 1084
LT+ G + A VG +GSGKS + + LL HIT E +QKL +W
Sbjct: 24 LTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVSDEW 83
Query: 1085 LRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL--QEGYDTLVGERGVQLSGGQKQR 1142
R ++S T I + L Q G L+ R LS G+ ++
Sbjct: 84 QRNNTDMLSPGEDDTGRTTAEIIQDEVKDPARCEQLAQQFGITALLDRRFKYLSTGETRK 143
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV-VAHRLSTIKN-AH 1200
+ +A++ EP +L+LDE LD+ S + + + L + TLV V +R I +
Sbjct: 144 TLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQ 203
Query: 1201 LIAVVSQGMIVEKGSHESLIS 1221
V++ + E G E ++
Sbjct: 204 FAGVLADCTLAETGEREEILQ 224
|
Length = 490 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 2e-07
Identities = 54/183 (29%), Positives = 85/183 (46%), Gaps = 44/183 (24%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI---TLDGVEIQKLQVKWLR 1086
+D + G IAL+G +G GK+T++ L+ SG I T KL+V +
Sbjct: 336 KDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHCGT-------KLEVAYFD 388
Query: 1087 QQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQE-----------GY--DTLVG-ERG 1132
Q + E T+ N+AE G QE GY D L +R
Sbjct: 389 QHRAELDPE-----KTVMDNLAE---------GKQEVMVNGRPRHVLGYLQDFLFHPKRA 434
Query: 1133 VQ----LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLV 1188
+ LSGG++ R+ +AR +K +L+LDE T+ LD+E+ ++++ LD T L+
Sbjct: 435 MTPVKALSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDS--YQGTVLL 492
Query: 1189 VAH 1191
V+H
Sbjct: 493 VSH 495
|
Length = 635 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 2e-07
Identities = 72/289 (24%), Positives = 122/289 (42%), Gaps = 88/289 (30%)
Query: 974 ASKAKSSAASVFGLIDQVSKID----SSEYT-------GRTLENVMGEVQFLRVSFKYPT 1022
ASKAK A S ID++ K++ SS + L EV+ ++ +
Sbjct: 276 ASKAKQ-ATSRAKQIDKI-KLEEVKPSSRQNPFIRFEQDKKLHRNALEVE--NLTKGFDN 331
Query: 1023 RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV 1082
P +F++L L + G+ +A++GE+G GK+T++ L +P SG V
Sbjct: 332 GP---LFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSG------------TV 376
Query: 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMA--NANGFISGL----------QEGYDTLVGE 1130
KW + ANI A +A F + L QEG D
Sbjct: 377 KW-----------------SENANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQA-V 418
Query: 1131 RGV----------------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
RG LSGG+K R+ + ++++P +L++DE T+ +D+ES +
Sbjct: 419 RGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLN 478
Query: 1175 DALDQVMVDRTTLVVAH------RLSTIKNAHLIAVVSQGMIVEKGSHE 1217
AL+ + T + V+H L+T +I + G++ G++E
Sbjct: 479 MALE--KYEGTLIFVSHDREFVSSLAT----RIIEITPDGVVDFSGTYE 521
|
Length = 530 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 3e-07
Identities = 55/216 (25%), Positives = 94/216 (43%), Gaps = 50/216 (23%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLID-GVNLKEFQLKWIREKIGLVS---QEPVL- 472
LVG +G+GKST++ ++ GEVL+D G + I E+ +V+ Q+P
Sbjct: 34 LVGRNGAGKSTLMKIL-------NGEVLLDDG--------RIIYEQDLIVARLQQDPPRN 78
Query: 473 LSSSIRDNIAYGKTHATK------------------------EEIQAAAEAANASHF--- 505
+ ++ D +A G + ++Q + N
Sbjct: 79 VEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENR 138
Query: 506 IKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA 565
I + L + LSGG ++ A+ RA++ +P +LLLDE T+ LD E+ ++
Sbjct: 139 INEVLAQLGLDPDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGF 198
Query: 566 LDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600
L + + +SH S IRN A I + +GK+V
Sbjct: 199 L--KTFQGSIIFISHDRSFIRNMATRIVDLDRGKLV 232
|
Length = 635 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 54.7 bits (132), Expect = 3e-07
Identities = 56/197 (28%), Positives = 97/197 (49%), Gaps = 31/197 (15%)
Query: 380 DIRGDI-ELKDVNFSYPARPDE-QILN---GFCLLIPNGTIAALVGTSGSGKSTVIS-LI 433
+ DI +++ + + ++ ILN G+ P GT+ AL+G SG+GK+T+++ L
Sbjct: 754 ESGEDIFHWRNLTYEVKIKKEKRVILNNVDGWV--KP-GTLTALMGASGAGKTTLLNVLA 810
Query: 434 QRFYDP--QAGEVLIDGVNLKE-FQLKWIREKIGLVSQEPV-LLSSSIRDNIAYGK---- 485
+R G+ L++G L FQ IG V Q+ + L +S++R+++ +
Sbjct: 811 ERVTTGVITGGDRLVNGRPLDSSFQ-----RSIGYVQQQDLHLPTSTVRESLRFSAYLRQ 865
Query: 486 -THATKEEIQAAAEAANASHFIK--NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542
+K E E IK + D VG G L+ Q++R+ I ++ P
Sbjct: 866 PKSVSKSEKMEYVEEV-----IKLLEMESYADAVVGVPGEGLNVEQRKRLTIGVELVAKP 920
Query: 543 RILL-LDEATSALDSES 558
++LL LDE TS LDS++
Sbjct: 921 KLLLFLDEPTSGLDSQT 937
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 51.9 bits (125), Expect = 5e-07
Identities = 60/221 (27%), Positives = 103/221 (46%), Gaps = 37/221 (16%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGLVSQEPV 471
G I LVG +G+GKST+++ + P +G + G L+ + + R + L Q+
Sbjct: 22 GEILHLVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTP 80
Query: 472 LLSSSIRDNIA-YGKTHATKEEIQAA----AEAANASHFIKNLPQGLDTNVGEHGIQLSG 526
+ + + + E + +A AEA L L +V QLSG
Sbjct: 81 PFAMPVFQYLTLHQPDKTRTEAVASALNEVAEALG-------LDDKLGRSVN----QLSG 129
Query: 527 GQKQRVAIARAMIK-DPRI------LLLDEATSALDSESGRMVQE-ALDRVM-----INR 573
G+ QRV +A +++ P I LLLDE ++LD + Q+ ALDR++
Sbjct: 130 GEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLD-----VAQQAALDRLLSELCQQGI 184
Query: 574 TTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENPY 613
V+ SH L+ +R+A+ + +++QGK++ G E+L
Sbjct: 185 AVVMSSHDLNHTLRHADRVWLLKQGKLLASGRRDEVLTPEN 225
|
Length = 248 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 52.4 bits (126), Expect = 5e-07
Identities = 52/208 (25%), Positives = 91/208 (43%), Gaps = 44/208 (21%)
Query: 404 NGFCLL---IPN-GTIAALVGTSGSGKSTVISLIQ--------RFYDPQAGEVLID---G 448
N F L +P G + LVG +G GKST + ++ +F DP + ++D G
Sbjct: 13 NSFKLHRLPVPREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRG 72
Query: 449 VNLKEF-------QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAAN 501
L+ + +K I K V P + + + + +E+ E
Sbjct: 73 SELQNYFTKLLEGDVKVIV-KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLE--- 128
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS----E 557
++++ LD N+ QLSGG+ QRVAIA A+ +D DE +S LD
Sbjct: 129 ----LRHV---LDRNID----QLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLN 177
Query: 558 SGRMVQEALDRVMINRTTVIVSHRLSLI 585
+ R+++E + + ++V H L+++
Sbjct: 178 AARLIRELAED---DNYVLVVEHDLAVL 202
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 52.8 bits (127), Expect = 5e-07
Identities = 58/224 (25%), Positives = 100/224 (44%), Gaps = 38/224 (16%)
Query: 418 LVGTSGSGKS-TVISLIQRFYDPQ--AGEVLIDG---VNLKEFQLKWIR-EKIGLVSQEP 470
+VG SGSGKS T +L+ G +G +NL E +L +R E+I ++ Q+P
Sbjct: 47 IVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKELNKLRAEQISMIFQDP 106
Query: 471 VL-----------LSSSIRDNIAYGKTHATKEEIQA--AAEAANASHFIKNLPQGLDTNV 517
+ L + + K A +E ++ A + A +K P
Sbjct: 107 MTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEARKRMKMYPH------ 160
Query: 518 GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTT 575
+ SGG +QRV IA A++ P++L+ DE T+ALD + L+ + N
Sbjct: 161 -----EFSGGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAI 215
Query: 576 VIVSHRLSLIRNANI---IAVIQQGKIVEKGTHSELLENPYGAY 616
++++H L ++ A I + V+ G+ +E G ++ P Y
Sbjct: 216 IMITHDLGVV--AGICDKVLVMYAGRTMEYGNARDVFYQPSHPY 257
|
Length = 330 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 51.1 bits (122), Expect = 6e-07
Identities = 43/166 (25%), Positives = 74/166 (44%), Gaps = 24/166 (14%)
Query: 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073
+ + F Y +P + + + +P G + L G +G+GK+T++ L+ +P G I +
Sbjct: 5 IELDFDYHDQP---LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFE 61
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN-------------IAEMANANGFISGL 1120
I+K + +Q V + + T+R N I E+ + L
Sbjct: 62 RQSIKKDLCTYQKQLCFVGHRSGINPYLTLRENCLYDIHFSPGAVGITELCR----LFSL 117
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
+ D G LS GQK++VA+ R + + K+ LLDE ALD
Sbjct: 118 EHLIDYPCG----LLSSGQKRQVALLRLWMSKAKLWLLDEPLVALD 159
|
Length = 200 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.4 bits (129), Expect = 6e-07
Identities = 47/155 (30%), Positives = 74/155 (47%), Gaps = 17/155 (10%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI--GLV---- 466
G I L G G+G+S ++ L+ AG+V +DG K ++ R+ I G++
Sbjct: 279 GEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDG---KPIDIRSPRDAIRAGIMLCPE 335
Query: 467 --SQEPVLLSSSIRDNI---AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521
E ++ S+ DNI A I EA NA FI++L + T E
Sbjct: 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQL 393
Query: 522 I-QLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
I LSGG +Q+ + R + +D +++LLDE T +D
Sbjct: 394 IMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGID 428
|
Length = 501 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 8e-07
Identities = 47/166 (28%), Positives = 78/166 (46%), Gaps = 35/166 (21%)
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
TI PG+ + LVG++G GKST+++LL+ G T G Q+ W+ Q+ + Q
Sbjct: 23 TINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----NWQLAWVNQETPALPQ 78
Query: 1095 ---EPVLFSD-TIRANIAEMANAN-----GFISGLQEGYDTL---------------VGE 1130
E V+ D R A++ +AN I+ + D + +G
Sbjct: 79 PALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGF 138
Query: 1131 RGVQL-------SGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
QL SGG + R+ +A+A++ +LLLDE T+ LD+++
Sbjct: 139 SNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDA 184
|
Length = 638 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 53.2 bits (128), Expect = 8e-07
Identities = 48/187 (25%), Positives = 75/187 (40%), Gaps = 39/187 (20%)
Query: 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST----VISLLQRFYDPSSG 1068
R K+ ++ + + I PG+ ++G GSG ST + S F+ G
Sbjct: 61 GFRKLKKFRDTKTFDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEG 120
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLF--------------------------SDT 1102
IT DG+ +++ K R + ++ V F +
Sbjct: 121 VITYDGITPEEI-KKHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREE 179
Query: 1103 IRANIAEMANANGFISGLQEGYDTLVGE---RGVQLSGGQKQRVAIARAIVKEPKILLLD 1159
+IA++ A GL +T VG RGV SGG+++RV+IA A + KI D
Sbjct: 180 YAKHIADVYMA---TYGLSHTRNTKVGNDFVRGV--SGGERKRVSIAEASLGGAKIQCWD 234
Query: 1160 EATSALD 1166
AT LD
Sbjct: 235 NATRGLD 241
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 1e-06
Identities = 60/226 (26%), Positives = 94/226 (41%), Gaps = 43/226 (19%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I D +F YP P + I + A+VG +G GKST++ LI P +G V
Sbjct: 509 ISFSDASFGYPGGP--LLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTV 566
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504
F+ +R + + SQ H ++ +
Sbjct: 567 ---------FRSAKVR--MAVFSQH-----------------HVDGLDLSSNPLLYMMRC 598
Query: 505 FIKNLPQGLDTNVGEHGIQ----------LSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
F Q L ++G G+ LSGGQK RVA A+ K P ILLLDE ++ L
Sbjct: 599 FPGVPEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHL 658
Query: 555 DSESGRMVQEALDRVMINRTTVIVSHRLSLIRNA-NIIAVIQQGKI 599
D ++ + + L V+ ++VSH LI + + + V+ +GK+
Sbjct: 659 DLDAVEALIQGL--VLFQGGVLMVSHDEHLISGSVDELWVVSEGKV 702
|
Length = 718 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 2e-06
Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 19/184 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGE 443
+E +++ P + ++ + G I + G G+G++ ++ + Y + G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGN 317
Query: 444 VLIDG--VNLKEFQLKWIREKIGLVSQE-------PVLLSSSIRDNIAYG--KTHATKEE 492
V I+G V+++ + IR I +V ++ P+L + NI K+ K
Sbjct: 318 VFINGKPVDIRNPA-QAIRAGIAMVPEDRKRHGIVPIL---GVGKNITLSVLKSFCFKMR 373
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEAT 551
I AAAE I+ L + T I +LSGG +Q+ +A+ ++ +PR+L+LDE T
Sbjct: 374 IDAAAELQIIGSAIQRLK--VKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILDEPT 431
Query: 552 SALD 555
+D
Sbjct: 432 RGVD 435
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 52.0 bits (126), Expect = 2e-06
Identities = 49/188 (26%), Positives = 83/188 (44%), Gaps = 57/188 (30%)
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL-DGVEIQKLQVKWLRQ 1087
DL ++PPG + ++G +G+GKST+ ++ P SG I + + V
Sbjct: 340 IDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGETV------------ 387
Query: 1088 QMGVVSQEPVLFSDTIRANIAEMANANGF--ISGLQEGYDTL-VGERGV----------- 1133
++ V Q R + N + ISG G D + VG R +
Sbjct: 388 KLAYVDQS--------RDALD--PNKTVWEEISG---GLDIIKVGNREIPSRAYVGRFNF 434
Query: 1134 ----------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ---- 1179
LSGG++ R+ +A+ + + +LLLDE T+ LD+E+ R +++AL +
Sbjct: 435 KGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEFPGC 494
Query: 1180 VMV---DR 1184
+V DR
Sbjct: 495 AVVISHDR 502
|
Length = 556 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 2e-06
Identities = 24/66 (36%), Positives = 39/66 (59%), Gaps = 2/66 (3%)
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN--RTTVIVS 579
I LSGG+ QRVAIA A++++ L DE ++ LD E A+ R+ +T ++V
Sbjct: 70 IDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVE 129
Query: 580 HRLSLI 585
H L+++
Sbjct: 130 HDLAVL 135
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 2e-06
Identities = 59/235 (25%), Positives = 94/235 (40%), Gaps = 40/235 (17%)
Query: 990 QVSKIDSSEYTGRTLENVMG----EVQFLRVSFKY-P--TRPHIEVFRDLCLTIPPGKTI 1042
+V +I+S GR V G E Q + F+ P T + L +P G +
Sbjct: 422 RVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNGDVLIESLSFEVPSGNNL 481
Query: 1043 ALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102
+ G +G GKS++ +L + G +T + ++ V Q P + T
Sbjct: 482 LICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGT 530
Query: 1103 IRANI-----AEMANANGF-----ISGLQEGYDTLVGERGV----------QLSGGQKQR 1142
+R I +E G L T + ER LSGG+KQR
Sbjct: 531 LRDQIIYPDSSEDMKRRGLSDKDLEQILDNVQLTHILEREGGWSAVQDWMDVLSGGEKQR 590
Query: 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK 1197
+A+AR +P+ +LDE TSA+ ++ E + + + T V+HR S K
Sbjct: 591 IAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREFGI--TLFSVSHRKSLWK 643
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (125), Expect = 2e-06
Identities = 53/179 (29%), Positives = 80/179 (44%), Gaps = 53/179 (29%)
Query: 1044 LVGESGSGKSTVISLLQRFYDPSSGHITLD-GVEIQKLQVKWLRQ--------------- 1087
L+G +G GKST + +L +PS+G+++LD + KL RQ
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLDPNERLGKL-----RQDQFAFEEFTVLDTVI 86
Query: 1088 ----QMGVVSQEPVLFSDTIRANIAEMANANGFISGLQE-------GY--DTLVGE--RG 1132
++ V QE D I A EM+ +G E GY + GE G
Sbjct: 87 MGHTELWEVKQE----RDRIYAL-PEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLG 141
Query: 1133 V------------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
V +++ G K RV +A+A+ P ILLLDE T+ LDI + R ++D L++
Sbjct: 142 VGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE 200
|
Length = 530 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 52.0 bits (125), Expect = 2e-06
Identities = 45/154 (29%), Positives = 76/154 (49%), Gaps = 14/154 (9%)
Query: 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK----I 463
L + +I AL+G +G+GKST++ + Y +G +L G KE K +E I
Sbjct: 19 LKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG---KEIDFKSSKEALENGI 75
Query: 464 GLVSQE-PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVG--EH 520
+V QE ++L S+ DN+ G+ + TK + + K + LD ++
Sbjct: 76 SMVHQELNLVLQRSVMDNMWLGR-YPTKGMFVDQDKMYRDT---KAIFDELDIDIDPRAK 131
Query: 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
LS Q Q + IA+A + +I+++DE TS+L
Sbjct: 132 VATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 51.3 bits (124), Expect = 3e-06
Identities = 55/207 (26%), Positives = 86/207 (41%), Gaps = 49/207 (23%)
Query: 404 NGFCLL---IP-NGTIAALVGTSGSGKSTVIS-----LIQRFYDPQAGEVLIDGV----- 449
NGF L IP G + ++G +G GK+T + LI D + E D V
Sbjct: 86 NGFKLYGLPIPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYE-EEPSWDEVLKRFR 144
Query: 450 ---------NLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
L ++K + K V P + GK +E ++ E
Sbjct: 145 GTELQNYFKKLYNGEIKVVH-KPQYVDLIPKVFK---------GKV---RELLKKVDERG 191
Query: 501 NASHFIKNLPQGLDTNVGEHGI-QLSGGQKQRVAIARAMIKDPRILLLDEATSALD---- 555
++ L GL+ N+ + I +LSGG+ QRVAIA A+++D DE TS LD
Sbjct: 192 KLDEVVERL--GLE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQR 248
Query: 556 SESGRMVQEALDRVMINRTTVIVSHRL 582
R+++E + + ++V H L
Sbjct: 249 LNVARLIRELAE----GKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 3e-06
Identities = 50/199 (25%), Positives = 88/199 (44%), Gaps = 41/199 (20%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL---------------------QRFYD 1064
+++ R++ PG AL+G SG+GK+T++ +L Q +
Sbjct: 893 LQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFA 952
Query: 1065 PSSGHITLDGVEIQKLQVK-------WLRQQMGVVSQEPVLFSDTIRANIAEMANANGFI 1117
SG+ + + ++ V+ +LR V +E ++F D + + E+ N
Sbjct: 953 RISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEV-MELVELDNLK--- 1008
Query: 1118 SGLQEGYDTLVGERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
D +VG GV LS Q++R+ IA +V P I+ +DE TS LD + +V
Sbjct: 1009 -------DAIVGLPGVTGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRT 1061
Query: 1177 L-DQVMVDRTTLVVAHRLS 1194
+ + V RT + H+ S
Sbjct: 1062 VRNTVDTGRTVVCTIHQPS 1080
|
Length = 1470 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 50.4 bits (121), Expect = 4e-06
Identities = 54/201 (26%), Positives = 91/201 (45%), Gaps = 37/201 (18%)
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL-----QRFYDPSSGHITLD 1073
Y RP + +L + PG+ +VG +G+GKST++SL+ Q + S +TL
Sbjct: 269 SYNDRP---ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGY----SNDLTLF 321
Query: 1074 GVEIQKLQVKW-LRQQMGVVSQEPVL---FSDTIRANI----------------AEMANA 1113
G + W +++ +G VS L S ++R I + A
Sbjct: 322 GRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLA 381
Query: 1114 NGFISGLQEGYDTLVGERGVQ-LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
++ L G D + LS GQ++ I RA+VK P +L+LDE LD + ++
Sbjct: 382 QQWLDIL--GIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQGLDPLNRQL 439
Query: 1173 VQDALDQVMVDRTT--LVVAH 1191
V+ +D ++ + T L V+H
Sbjct: 440 VRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 5e-06
Identities = 55/254 (21%), Positives = 116/254 (45%), Gaps = 38/254 (14%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS----TVISLLQRFYDP 1065
+++ L + FK ++ + +T+ G+ LVGESGSGKS + + + +
Sbjct: 5 DIRNLTIEFKTSQGW-VKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRV 63
Query: 1066 SSGHITLDGVEIQKLQVKWLRQQMG----VVSQEPVLF---SDTIRANIAEMANANGFIS 1118
++ + D +++ +L + R+ +G ++ QEP S+ + + + A +
Sbjct: 64 TADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKG 123
Query: 1119 --------------------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158
G+++ D ++ +L+ G+ Q+V IA A+ +P++L+
Sbjct: 124 RWWQRFGWRKRRAIELLHRVGIKDHKD-IMRSYPYELTEGECQKVMIAIALANQPRLLIA 182
Query: 1159 DEATSALD-IESERVVQ--DALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214
DE T++++ ++ + L+Q + T L+++H L I A I V+ G VE
Sbjct: 183 DEPTNSMEPTTQAQIFRLLSRLNQNS-NTTILLISHDLQMISQWADKINVLYCGQTVESA 241
Query: 1215 SHESLISTKNGIYT 1228
E L++ + YT
Sbjct: 242 PSEELVTMPHHPYT 255
|
Length = 330 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 50.1 bits (120), Expect = 5e-06
Identities = 44/170 (25%), Positives = 71/170 (41%), Gaps = 41/170 (24%)
Query: 1024 PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ----- 1078
P ++ ++ L + P AL+GE+G+GKST++ L Y SG I G EI
Sbjct: 9 PGVKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSK 68
Query: 1079 -KLQ--VKWLRQQMGVVSQEPVL--------------------FSDTIRANIAEMANANG 1115
L+ + + Q++ +V Q V+ + DT +A E+
Sbjct: 69 EALENGISMVHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDT-KAIFDEL----- 122
Query: 1116 FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
D + LS Q Q + IA+A KI+++DE TS+L
Sbjct: 123 -------DIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSL 165
|
Length = 491 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.2 bits (118), Expect = 1e-05
Identities = 45/153 (29%), Positives = 71/153 (46%), Gaps = 20/153 (13%)
Query: 415 IAALVGTSGSGKS-TVISLIQRFYDPQAGEVLIDGVNLK-EFQLKWIREKIGLVSQE--- 469
IA LVG +G++ V L + GE+ IDG +K + I + I +V ++
Sbjct: 293 IAGLVG---AGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIAMVPEDRKR 349
Query: 470 ----PVLLSSSIRDNI--AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI- 522
PV+ + NI A I AAE I+ L + T E I
Sbjct: 350 DGIVPVM---GVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLK--VKTASPELAIA 404
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
+LSGG +Q+ +A+ ++ +P+IL+LDE T +D
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGID 437
|
Length = 506 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 1e-05
Identities = 41/165 (24%), Positives = 73/165 (44%), Gaps = 32/165 (19%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-------- 1081
RD+ + G+ + + G G+ ++ ++ L + S+G ITL G +I
Sbjct: 265 RDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHG 324
Query: 1082 ---VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQ----------------E 1122
V R+ G+ + + F+ I +NI N G + +
Sbjct: 325 FALVTEERRSTGIYAYLDIGFNSLI-SNIRNYKNKVGLLDNSRMKSDTQWVIDSMRVKTP 383
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
G+ T +G LSGG +Q+V I R ++ +P+IL+LDE T +D+
Sbjct: 384 GHRTQIG----SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDV 424
|
Length = 491 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 48.7 bits (116), Expect = 2e-05
Identities = 68/281 (24%), Positives = 104/281 (37%), Gaps = 69/281 (24%)
Query: 1003 TLENV---MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL 1059
TL N + E + + + + +D I P + L+G SGK+T++ L
Sbjct: 152 TLPNAARNIAESALGMLGINLAKKTKLTILKDASGIIKPSRMTLLLGPPSSGKTTLLLAL 211
Query: 1060 QRFYDPS---SGHITLDGVEIQKLQVKWLRQQMGVVSQEPV------------------- 1097
DPS SG IT +G + + R+ +SQ V
Sbjct: 212 AGKLDPSLKVSGEITYNGYRLNEFVP---RKTSAYISQNDVHVGVMTVKETLDFSARCQG 268
Query: 1098 ------LFSDTIR------------------ANIAEMANANGF------ISGLQEGYDTL 1127
L S+ R A E ++ I GL DT+
Sbjct: 269 VGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTI 328
Query: 1128 VGE---RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
VG+ RG+ SGGQK+RV IV K L +DE ++ LD + + L Q+ V
Sbjct: 329 VGDEMIRGI--SGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQI-VHL 385
Query: 1185 TTLVVAHRL-----STIKNAHLIAVVSQGMIVEKGSHESLI 1220
T V L T I ++S+G IV +G + ++
Sbjct: 386 TEATVLMSLLQPAPETFDLFDDIILLSEGQIVYQGPRDHIL 426
|
Length = 1470 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 47.6 bits (114), Expect = 2e-05
Identities = 56/241 (23%), Positives = 97/241 (40%), Gaps = 78/241 (32%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVI------SLLQRFY---DPSSGHITLDGVEIQKL 1080
+++ + IP G + G SGSGKS++I +L +R + + H ++G+E
Sbjct: 12 KNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLE---- 67
Query: 1081 QVKWLRQQMGVVSQEPV-------------LFSDTIR----------------------- 1104
+ + V+ Q P+ +F D IR
Sbjct: 68 HIDKVI----VIDQSPIGRTPRSNPATYTGVF-DEIRELFCEVCKGKRYNRETLEVRYKG 122
Query: 1105 ANIAEMAN-----ANGF---ISGLQEGYDTLV---------GERGVQLSGGQKQRVAIAR 1147
+IA++ + A F I + TL G+ LSGG+ QR+ +A+
Sbjct: 123 KSIADVLDMTVEEALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAK 182
Query: 1148 AIVKE---PKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNA-HL 1201
+ K + +LDE T+ L + + + L Q +VD+ T +V+ H L IK A +
Sbjct: 183 ELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVL-QRLVDKGNTVVVIEHNLDVIKCADWI 241
Query: 1202 I 1202
I
Sbjct: 242 I 242
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 3e-05
Identities = 43/174 (24%), Positives = 79/174 (45%), Gaps = 34/174 (19%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
++L ++IP + + G SGSGKST++ +G+ L +
Sbjct: 12 QNLDVSIPLNVLVVVTGVSGSGKSTLV---------------NEGLYASG--KARLISFL 54
Query: 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149
S+ ++F D ++ I GL GY TL G++ LSGG+ QRV +A +
Sbjct: 55 PKFSRNKLIFIDQLQFLID---------VGL--GYLTL-GQKLSTLSGGELQRVKLASEL 102
Query: 1150 VKEPK--ILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKNA 1199
EP + +LDE ++ L + + + + ++D T +++ H L + +A
Sbjct: 103 FSEPPGTLFILDEPSTGLHQQDINQLLEVIKG-LIDLGNTVILIEHNLDVLSSA 155
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 6e-05
Identities = 53/206 (25%), Positives = 85/206 (41%), Gaps = 64/206 (31%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE ++++ S+ D +++ +P G I ++G +G+GKST+ +I P +G +
Sbjct: 325 IEAENLSKSFG---DRLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTI 381
Query: 445 LI-DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
I + V K+ V Q RD + KT EEI
Sbjct: 382 KIGETV------------KLAYVDQS--------RDALDPNKT--VWEEIS--------- 410
Query: 504 HFIKNLPQGLDT-NVGEHGI---------------------QLSGGQKQRVAIARAMIKD 541
GLD VG I LSGG++ R+ +A+ + +
Sbjct: 411 -------GGLDIIKVGNREIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQG 463
Query: 542 PRILLLDEATSALDSESGRMVQEALD 567
+LLLDE T+ LD E+ R ++EAL
Sbjct: 464 GNVLLLDEPTNDLDVETLRALEEALL 489
|
Length = 556 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 47.1 bits (112), Expect = 6e-05
Identities = 51/185 (27%), Positives = 73/185 (39%), Gaps = 41/185 (22%)
Query: 401 QILNGFCLLIPNGTIA-------ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453
QI G +L+ N T LVG +G GKST+++L++ G G
Sbjct: 8 QIRRGVRVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPG----N 63
Query: 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ-AAAEAANASHFIKNLPQG 512
+QL W V+QE L + + G + E Q A N H I +
Sbjct: 64 WQLAW-------VNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGK 116
Query: 513 LDT---------------NVGEHGIQL-------SGGQKQRVAIARAMIKDPRILLLDEA 550
LD +G QL SGG + R+ +A+A+I +LLLDE
Sbjct: 117 LDAIDAWTIRSRAASLLHGLGFSNEQLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEP 176
Query: 551 TSALD 555
T+ LD
Sbjct: 177 TNHLD 181
|
Length = 638 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 6e-05
Identities = 57/235 (24%), Positives = 91/235 (38%), Gaps = 64/235 (27%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG---LV 466
IP G + + G SGSGKS++I Y A + + E I ++
Sbjct: 18 IPLGVLTCVTGVSGSGKSSLI--NDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVI 75
Query: 467 SQEPVLLSSS------------IRD----------------NIAY-GKTHA-----TKEE 492
Q P+ + IR+ + Y GK+ A T EE
Sbjct: 76 DQSPIGRTPRSNPATYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIADVLDMTVEE 135
Query: 493 IQAAAEAANASHFIKNLPQ-----------GLD-TNVGEHGIQLSGGQKQRVAIARAMIK 540
A F +N+P+ GL +G+ LSGG+ QR+ +A+ + K
Sbjct: 136 ---------ALEFFENIPKIARKLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSK 186
Query: 541 DPR---ILLLDEATSALDSESGRMVQEALDRVMINRTTVIV-SHRLSLIRNANII 591
+ +LDE T+ L + + E L R++ TV+V H L +I+ A+ I
Sbjct: 187 RSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIKCADWI 241
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (108), Expect = 7e-05
Identities = 41/168 (24%), Positives = 76/168 (45%), Gaps = 29/168 (17%)
Query: 399 DEQIL-NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK----E 453
DE+IL +G + G + + G +G+GK++++ ++ P AGEVL G ++ E
Sbjct: 12 DERILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQRDE 71
Query: 454 F--QLKWIREKIG----LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIK 507
+ L ++ + G L + E + + E + A + F +
Sbjct: 72 YHQDLLYLGHQPGIKTELTALENLRFYQRLHGP-------GDDEALWEALAQVGLAGF-E 123
Query: 508 NLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
++P QLS GQ++RVA+AR + + +LDE +A+D
Sbjct: 124 DVPVR----------QLSAGQQRRVALARLWLTRAPLWILDEPFTAID 161
|
Length = 204 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 8e-05
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 40/205 (19%)
Query: 375 GKKLDD-------IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKS 427
G+KL+D G++ LK N S P +N + G I + G G+G++
Sbjct: 239 GRKLEDQYPRLDKAPGEVRLKVDNLSGPG------VNDVSFTLRKGEILGVSGLMGAGRT 292
Query: 428 TVISLIQRFYDPQAGEVLIDG--VNLKEFQ------LKWI---REKIGLVSQEPVLLSSS 476
++ ++ +G V +DG V + Q + +I R++ GLV L S
Sbjct: 293 ELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYISEDRKRDGLV------LGMS 346
Query: 477 IRDNI---AYGKTHATKEEIQAAAEAANASHFIK--NLPQ-GLDTNVGEHGIQLSGGQKQ 530
+++N+ A ++ A E S FI+ N+ ++ +G LSGG +Q
Sbjct: 347 VKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPSMEQAIGL----LSGGNQQ 402
Query: 531 RVAIARAMIKDPRILLLDEATSALD 555
+VAIAR ++ P++L+LDE T +D
Sbjct: 403 KVAIARGLMTRPKVLILDEPTRGVD 427
|
Length = 501 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 46.5 bits (110), Expect = 9e-05
Identities = 51/218 (23%), Positives = 98/218 (44%), Gaps = 29/218 (13%)
Query: 375 GKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434
G K D +R L ++ Y + + C+ + G L+G +G+GK+T ++
Sbjct: 1932 GNKTDILR----LNELTKVYSGTSSPAV-DRLCVGVRPGECFGLLGVNGAGKTTTFKMLT 1986
Query: 435 RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH------- 487
+G+ + G ++ + + + +G Q + D++ G+ H
Sbjct: 1987 GDTTVTSGDATVAGKSILT-NISDVHQNMGYCPQFDAI------DDLLTGREHLYLYARL 2039
Query: 488 --ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
EEI+ + AN S I++L GL SGG K++++ A A+I P ++
Sbjct: 2040 RGVPAEEIE---KVANWS--IQSL--GLSLYADRLAGTYSGGNKRKLSTAIALIGCPPLV 2092
Query: 546 LLDEATSALDSESGRMVQEALDRVMIN-RTTVIVSHRL 582
LLDE T+ +D ++ RM+ + ++ R V+ SH +
Sbjct: 2093 LLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSM 2130
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 9e-05
Identities = 28/98 (28%), Positives = 56/98 (57%), Gaps = 3/98 (3%)
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT--LVVAH 1191
+L+ G+ Q+V IA A+ +P++L+ DE T+A++ ++ + L ++ + T L+++H
Sbjct: 158 ELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISH 217
Query: 1192 RLSTI-KNAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
L + + A I V+ G VE + L++T + YT
Sbjct: 218 DLQMLSQWADKINVLYCGQTVETAPSKELVTTPHHPYT 255
|
Length = 330 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.6 bits (108), Expect = 1e-04
Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 4/91 (4%)
Query: 1101 DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
+ I A AE A A ++GL + V + SGG + R+A+ARA+ EP +LLLDE
Sbjct: 313 ELIDAYTAE-ARAASILAGLSFTPEMQV-KATKTFSGGWRMRIALARALFIEPDLLLLDE 370
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAH 1191
T+ LD+ + ++ L + +T +VV+H
Sbjct: 371 PTNHLDLHAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 54/197 (27%), Positives = 88/197 (44%), Gaps = 52/197 (26%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQ------EPV 471
L+G +G GKST + ++ +P AG V +D N E++G + Q E
Sbjct: 32 LIGANGCGKSTFMKILGGDLEPSAGNVSLD-PN----------ERLGKLRQDQFAFEEFT 80
Query: 472 LLSSSI------------RDNIAYGKTHATKEEIQAAAE-------------AANASHFI 506
+L + I RD I Y ++E+ A+ A A
Sbjct: 81 VLDTVIMGHTELWEVKQERDRI-YALPEMSEEDGMKVADLEVKFAEMDGYTAEARAG--- 136
Query: 507 KNLPQGLDTNVGEH-GI--QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
L G+ +H G+ +++ G K RV +A+A+ +P ILLLDE T+ LD + R ++
Sbjct: 137 -ELLLGVGIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLE 195
Query: 564 EALDRVMINRTTVIVSH 580
+ L+ N T +I+SH
Sbjct: 196 DVLNE--RNSTMIIISH 210
|
Length = 530 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (110), Expect = 1e-04
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGG+K R+ + M++ P +L++DE T+ +D ES + AL+ T + VSH
Sbjct: 439 LSGGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALE--KYEGTLIFVSHDRE 496
Query: 584 LIRN-ANIIAVIQQGKIVE-KGTHSELLEN 611
+ + A I I +V+ GT+ E L +
Sbjct: 497 FVSSLATRIIEITPDGVVDFSGTYEEYLRS 526
|
Length = 530 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 46.0 bits (109), Expect = 1e-04
Identities = 56/216 (25%), Positives = 93/216 (43%), Gaps = 20/216 (9%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
LN +P G I ++G +GSGKST+ +LI P G V I G I
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG------SAALIAIS 93
Query: 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
GL Q + + ++ + KE I E A+ FI Q + T
Sbjct: 94 SGLNGQLTGIENIELKGLMMGLTKEKIKEIIPEIIEFADIGKFIY---QPVKT------- 143
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN-RTTVIVSHR 581
S G K R+ A ++ +P IL++DEA S D + + ++ +T +SH
Sbjct: 144 -YSSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHS 202
Query: 582 LSLIRNANIIAV-IQQGKIVEKGTHSELLENPYGAY 616
LS +++ A+ + G++ E G E++++ Y +
Sbjct: 203 LSQVKSFCTKALWLHYGQVKEYGDIKEVVDH-YDEF 237
|
Length = 549 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 2e-04
Identities = 18/33 (54%), Positives = 26/33 (78%)
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
LSGG +Q+VAIAR ++ PK+L+LDE T +D+
Sbjct: 396 LSGGNQQKVAIARGLMTRPKVLILDEPTRGVDV 428
|
Length = 501 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 43.1 bits (102), Expect = 2e-04
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 522 IQLSGGQKQRVAIARAMI---KDPRIL-LLDEATSALDSESGRMVQEALDRVMINRTTVI 577
+QLSGG+K+ A+A + PR L +LDE LD G+ + EA+ ++ VI
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 578 V-SHRLSLIRNAN 589
V +H L A+
Sbjct: 136 VITHLPELAELAD 148
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.7 bits (103), Expect = 3e-04
Identities = 47/215 (21%), Positives = 90/215 (41%), Gaps = 50/215 (23%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG---------------- 1074
D+ L G I LVG +GSGKST+ +++ P+ G + +G
Sbjct: 42 DISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNGEVSVIAISAGLSGQLT 101
Query: 1075 ----VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGE 1130
+E + L + + R+++ ++ + + FS+ + E FI + Y
Sbjct: 102 GIENIEFKMLCMGFKRKEIKAMTPKIIEFSE-----LGE------FIYQPVKKY------ 144
Query: 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM----VDRTT 1186
S G + ++ + I P IL++DEA S D + Q LD++ ++T
Sbjct: 145 -----SSGMRAKLGFSINITVNPDILVIDEALSVGD---QTFAQKCLDKIYEFKEQNKTI 196
Query: 1187 LVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220
V+H L ++ IA + G + + G + ++
Sbjct: 197 FFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVL 231
|
Length = 264 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 44.7 bits (106), Expect = 4e-04
Identities = 47/170 (27%), Positives = 70/170 (41%), Gaps = 16/170 (9%)
Query: 401 QILNGFCLLIPNGTIAALVGTSGSGKST----VISLIQRFYDPQAGEVLIDGVNLKEFQL 456
IL LI G + ++G GSG ST + S F+ G + DG+ +E +
Sbjct: 75 DILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK- 133
Query: 457 KWIREKIGLVSQE----PVLLSSSIRDNIAYGKTHATK-----EEIQAAAEAANASHFIK 507
K R + ++ P L D A KT + E A A
Sbjct: 134 KHYRGDVVYNAETDVHFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMA-TY 192
Query: 508 NLPQGLDTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
L +T VG ++ +SGG+++RV+IA A + +I D AT LDS
Sbjct: 193 GLSHTRNTKVGNDFVRGVSGGERKRVSIAEASLGGAKIQCWDNATRGLDS 242
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 42.3 bits (100), Expect = 4e-04
Identities = 50/203 (24%), Positives = 77/203 (37%), Gaps = 53/203 (26%)
Query: 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQE 469
IP + + G SGSGKST L+ LI L +F R K+ + Q
Sbjct: 18 IPLNVLVVVTGVSGSGKST---LVNEGLYASGKARLISF--LPKFS----RNKLIFIDQ- 67
Query: 470 PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529
L I + Y L Q L T LSGG+
Sbjct: 68 ---LQFLIDVGLGYLT-----------------------LGQKLST--------LSGGEL 93
Query: 530 QRVAIARAMIKDPR--ILLLDEATSALDSESGRMVQEALDRVMINRTTVIV-SHRLSLIR 586
QRV +A + +P + +LDE ++ L + + E + ++ TVI+ H L ++
Sbjct: 94 QRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153
Query: 587 NANII------AVIQQGKIVEKG 603
+A+ I + GK+V G
Sbjct: 154 SADWIIDFGPGSGKSGGKVVFSG 176
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 5e-04
Identities = 37/151 (24%), Positives = 67/151 (44%), Gaps = 12/151 (7%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLV------ 466
G I L G G+G++ + + + G ++++G + R GLV
Sbjct: 289 GEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA-QRLARGLVYLPEDR 347
Query: 467 SQEPVLLSSSIRDNIAYGKTHATKE-EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ-L 524
+ L + + N+ TH + I+ A E A + + L + N E + L
Sbjct: 348 QSSGLYLDAPLAWNV-CALTHNRRGFWIKPARENAVLERYRRAL--NIKFNHAEQAARTL 404
Query: 525 SGGQKQRVAIARAMIKDPRILLLDEATSALD 555
SGG +Q+V IA+ + P++L++DE T +D
Sbjct: 405 SGGNQQKVLIAKCLEASPQLLIVDEPTRGVD 435
|
Length = 510 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 8e-04
Identities = 44/184 (23%), Positives = 81/184 (44%), Gaps = 33/184 (17%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG---------------V 1075
++ +P G+ + ++G +GSGKST+ +L+ P+ G + + G
Sbjct: 42 NISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAALIAISSGLNGQLT 101
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQL 1135
I+ +++K L MG+ ++ I I E A+ FI + Y
Sbjct: 102 GIENIELKGL--MMGLTKEK----IKEIIPEIIEFADIGKFIYQPVKTY----------- 144
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLS 1194
S G K R+ A ++ P IL++DEA S D + D +++ +T ++H LS
Sbjct: 145 SSGMKSRLGFAISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLS 204
Query: 1195 TIKN 1198
+K+
Sbjct: 205 QVKS 208
|
Length = 549 |
| >gnl|CDD|184131 PRK13546, PRK13546, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 8e-04
Identities = 62/250 (24%), Positives = 105/250 (42%), Gaps = 44/250 (17%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462
L+ L G + LVG +GSGKST+ ++I P G+V +G ++ I
Sbjct: 40 LDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDRNG------EVSVIAIS 93
Query: 463 IGLVSQEPVLLSSSIRDNIAYGK--THATKEEIQAAAEAANASHFIKNLPQGLD-TNVGE 519
GL Q + +NI + ++EI+A P+ ++ + +GE
Sbjct: 94 AGLSGQLTGI------ENIEFKMLCMGFKRKEIKAM------------TPKIIEFSELGE 135
Query: 520 HGIQ----LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM----I 571
Q S G + ++ + + +P IL++DEA S D Q+ LD++
Sbjct: 136 FIYQPVKKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQT---FAQKCLDKIYEFKEQ 192
Query: 572 NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR-LQETCKES 629
N+T VSH L +R IA I+ GK+ + G ++L Y + ++ K
Sbjct: 193 NKTIFFVSHNLGQVRQFCTKIAWIEGGKLKDYGELDDVLPK----YEAFLNDFKKKSKAE 248
Query: 630 EKSAVNNSDS 639
+K N D
Sbjct: 249 QKEFRNKLDE 258
|
Length = 264 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 9e-04
Identities = 32/106 (30%), Positives = 58/106 (54%), Gaps = 13/106 (12%)
Query: 514 DTNVGEHGIQ-LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR-VMI 571
DT VG+ I+ +SGGQK+RV ++ + L +DE ++ LDS + + + L + V +
Sbjct: 326 DTIVGDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHL 385
Query: 572 NRTTVIVSHRLSLIRNA-------NIIAVIQQGKIVEKGTHSELLE 610
TV++ SL++ A + I ++ +G+IV +G +LE
Sbjct: 386 TEATVLM----SLLQPAPETFDLFDDIILLSEGQIVYQGPRDHILE 427
|
Length = 1470 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 0.001
Identities = 38/173 (21%), Positives = 74/173 (42%), Gaps = 30/173 (17%)
Query: 1021 PTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDG--VEI 1077
PH + D+ ++ G+ + + G G+G++ ++ L Y G++ ++G V+I
Sbjct: 268 VINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDI 327
Query: 1078 QKLQ---------VKWLRQQMGVVSQEPV--------LFSDTIRANIAEMANANGFISGL 1120
+ V R++ G+V V L S + I A S +
Sbjct: 328 RNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAI 387
Query: 1121 QE------GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
Q +G +LSGG +Q+ +A+ ++ P++L+LDE T +D+
Sbjct: 388 QRLKVKTASPFLPIG----RLSGGNQQKAVLAKMLLTNPRVLILDEPTRGVDV 436
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 0.001
Identities = 22/58 (37%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH 580
SGG + R+A+ARA+ +P +LLLDE T+ LD + ++ L + +T ++VSH
Sbjct: 344 TFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYL--LKWPKTFIVVSH 399
|
Length = 718 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 43.3 bits (102), Expect = 0.001
Identities = 48/179 (26%), Positives = 84/179 (46%), Gaps = 10/179 (5%)
Query: 413 GTIAALVGTSGSGKSTVISLI--QRFYDPQAGEVLIDGVNLKEFQLKWIR---EKIGLVS 467
G + AL+G SG+GK+T++ ++ ++ G++ I G K+ I E+ + S
Sbjct: 906 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPKKQETFARISGYCEQNDIHS 965
Query: 468 QEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ-LSG 526
+ + S I +KEE + + NL D VG G+ LS
Sbjct: 966 PQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLK---DAIVGLPGVTGLST 1022
Query: 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL-DRVMINRTTVIVSHRLSL 584
Q++R+ IA ++ +P I+ +DE TS LD+ + +V + + V RT V H+ S+
Sbjct: 1023 EQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSI 1081
|
Length = 1470 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.6 bits (101), Expect = 0.001
Identities = 32/99 (32%), Positives = 51/99 (51%), Gaps = 10/99 (10%)
Query: 524 LSGGQKQRVAIARAMIK---DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIV-S 579
LSGG+ QRV +A+ + K + +LDE T+ L + + + E L R++ TVIV
Sbjct: 823 LSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVIE 882
Query: 580 HRLSLIRNANIIAVI------QQGKIVEKGTHSELLENP 612
H L +I+ A+ I + G+IV GT E+ +
Sbjct: 883 HNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK 921
|
Length = 935 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 42.1 bits (99), Expect = 0.002
Identities = 50/224 (22%), Positives = 102/224 (45%), Gaps = 44/224 (19%)
Query: 413 GTIAALVGTSGSGKSTVISLIQRF-YDPQA-GEVLIDGVNLK-EFQLKWIREKIGLVSQ- 468
G I G GSG++ +++ + F D +A GE+ ++G ++ L +++ + +++
Sbjct: 289 GEILGFAGLVGSGRTELMNCL--FGVDKRAGGEIRLNGKDISPRSPLDAVKKGMAYITES 346
Query: 469 --EPVLLSS-SIRDNIA-------------YGKTHATKEEIQAAAEAANASHFIKNLPQG 512
+ + SI N+A G H E Q AE +K
Sbjct: 347 RRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDE--QRTAENQRELLALKC--HS 402
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD----SESGRMVQEALDR 568
++ N+ E LSGG +Q+V I++ + P +++ DE T +D +E +++++ D
Sbjct: 403 VNQNITE----LSGGNQQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADD 458
Query: 569 VMINRTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLEN 611
+ ++VS L +I + IAV +G++ +++L N
Sbjct: 459 ---GKVILMVSSELPEIITVCDRIAVFCEGRL------TQILTN 493
|
Length = 510 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 41.8 bits (99), Expect = 0.002
Identities = 15/34 (44%), Positives = 25/34 (73%)
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167
+LSGG +Q+ +A+ ++ PKIL+LDE T +D+
Sbjct: 405 RLSGGNQQKAVLAKCLLLNPKILILDEPTRGIDV 438
|
Length = 506 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 24/64 (37%), Positives = 39/64 (60%), Gaps = 2/64 (3%)
Query: 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583
LSGG++ R+ +AR +K +L+LDE T+ LD E+ +++E LD T ++VSH
Sbjct: 441 LSGGERNRLLLARLFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQ 498
Query: 584 LIRN 587
+ N
Sbjct: 499 FVDN 502
|
Length = 635 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 42.2 bits (100), Expect = 0.002
Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 16/121 (13%)
Query: 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK---ILLLDEATSALDIESERVVQD 1175
GL GY L G+ LSGG+ QRV +A+ + K + +LDE T+ L + + + +
Sbjct: 810 GL--GYIKL-GQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLE 866
Query: 1176 ALDQVMVDR--TTLVVAHRLSTIKNA-HLIAV-----VSQGMIVEKGSHESLISTKNGIY 1227
L + +VD+ T +V+ H L IK A +I + G IV G+ E + K Y
Sbjct: 867 VLHR-LVDKGNTVIVIEHNLDVIKTADWIIDLGPEGGDGGGEIVASGTPEEVAKVK-ASY 924
Query: 1228 T 1228
T
Sbjct: 925 T 925
|
Length = 935 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 41.7 bits (98), Expect = 0.002
Identities = 20/67 (29%), Positives = 32/67 (47%), Gaps = 9/67 (13%)
Query: 523 QLSGGQKQ------RVAIARAMIKDPRI--LLLDEATSALDSESGRMVQEALDRV-MINR 573
LSGG++ R+A++ + R+ L LDE LD E + E L+ + R
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 574 TTVIVSH 580
+I+SH
Sbjct: 875 QIIIISH 881
|
Length = 908 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 41.5 bits (98), Expect = 0.003
Identities = 15/59 (25%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
E+++VN+ +Q++ F + G AL+G +G GK+T++ L+ +G +
Sbjct: 321 EMENVNYQID---GKQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRI 376
|
Length = 635 |
| >gnl|CDD|222219 pfam13558, SbcCD_C, Putative exonuclease SbcCD, C subunit | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.003
Identities = 21/58 (36%), Positives = 30/58 (51%), Gaps = 12/58 (20%)
Query: 523 QLSGGQKQR---VAIARAMI---------KDPRILLLDEATSALDSESGRMVQEALDR 568
LSGG+KQ +A+A A+ PR++ LDEA + LD E+ R + E L
Sbjct: 22 TLSGGEKQVLAYLALAAALAAQYGSNRGGPAPRLIFLDEAFAKLDEENIRSLLELLRE 79
|
Possible exonuclease SbcCD, C subunit, on AAA proteins. Length = 79 |
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1236 | |||
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-219 Score=1999.63 Aligned_cols=1188 Identities=54% Similarity=0.887 Sum_probs=1103.1
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
..++..+++|..++++.+++++++++++.++..|++.+++++++|.+....+. ...+.+..+++.+++++++.++..|+
T Consensus 12 ~~~~~~lf~~a~~~D~~Lm~~G~i~a~~~G~~~P~~~ii~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~lg~~~~~~~~~ 90 (1228)
T KOG0055|consen 12 TVSFFKLFRFADRFDYLLMILGSIGAIAHGLGLPLMSIIFGKLTDVLGDNTNK-IASSEVSKVALYFVYLGVGVFISGFI 90 (1228)
T ss_pred ccchHHheeccchhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHhccch-hhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999987654322 22245667888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+..||.+.++|+..++|.++++.++|++++|||.+ .+|++.+|+++|++.|++++++.+..++..+.++++++++.|+.
T Consensus 91 q~~c~~~~geRq~~riR~~yl~~iLrQdi~~fD~~-~~g~~~~~l~~d~~~I~d~~geKvg~~i~~~~~fi~g~ii~F~~ 169 (1228)
T KOG0055|consen 91 QVSCWMRTGERQTARIRSKYLKAILRQDIGWFDTN-STGELVTRLSDDIELIQDAIGEKVGNFIQLLATFIAGFVIGFYY 169 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCccceeecc-cccceEEEecCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 88999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
.|+|+++++.+.|++++....+.+.+.+...+.++.+++..++++|++.++|||.+|+.|+.+.+||.+..+..++...+
T Consensus 170 ~W~Ltlv~l~~~Pli~~~g~~~a~~~~~~t~ke~~~ya~Ag~iaEe~i~~iRTV~af~gq~~e~~ry~~~L~~~~k~gi~ 249 (1228)
T KOG0055|consen 170 GWKLTLVMLSFIPLIAIAGGLLARFLSKLTEKEQEAYAKAGSIAEEVISSIRTVYAFNGEKKEIERYSKALENALKFGIK 249 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
...+.++..+++.++.+..+++.+|||+.++.++..+.|+++..+++++.....+++.+|.+..+.+|++|+.+|+++++
T Consensus 250 ~g~~~G~~~G~~~~~~~~~~a~~~WyG~~li~~~~~~~g~v~~v~~~vl~g~~sLgqa~p~l~~f~~a~~aa~~I~~~i~ 329 (1228)
T KOG0055|consen 250 KGLFKGLGLGFTFFLLFASYALAFWYGSTLILNGGYNGGDVITVFFSVLIGGMSLGQASPHLSAFAKARAAAYRIFETID 329 (1228)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEeehhhhhhhhhccccchHHHhccccchHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
..|+++.....+......+|+|+|+||+|+||.+++.++|+|+||+|++||++||||||||||||+++||.|||+|++|+
T Consensus 330 ~~~~i~~~~~~~~~~~~~~g~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~ 409 (1228)
T KOG0055|consen 330 RKPSIDPYSKGGRVLSSIKGEIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGE 409 (1228)
T ss_pred CCCCCCcccccCCcccccccceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCce
Confidence 99887654323334556789999999999999999899999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|++||.|+++++.+|+|++||+|+|+|.||++||+|||+||+|+++.+++.+||+++++++||.+||+||||.+||+|.+
T Consensus 410 V~idG~di~~~~~~~lr~~iglV~QePvlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~vge~g~q 489 (1228)
T KOG0055|consen 410 VLIDGEDIRNLNLKWLRSQIGLVSQEPVLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTLVGERGVQ 489 (1228)
T ss_pred EEEcCccchhcchHHHHhhcCeeeechhhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhcccccCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||||||||||++||+||||||||||||+++|+.++++|+++++|||+|+|||||+++++||+|+||++|+|+|.|
T Consensus 490 LSGGQKQRIAIARalv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrnaD~I~v~~~G~IvE~G 569 (1228)
T KOG0055|consen 490 LSGGQKQRIAIARALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRNADKIAVMEEGKIVEQG 569 (1228)
T ss_pred CChHHHHHHHHHHHHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhccCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhhhhhhcccccccCCC---CCCCC-CCCCCC-CCCCC--CC-C----cCCCCccccccCCCC
Q 040099 604 THSELLENPYGAYNRLIRLQETCKESEKSAVNNS---DSDNQ-PFASPK-ITTPK--QS-E----TESDFPASEKAKMPP 671 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~---~~~~~-~~~~~~-~~~~~--~~-~----~~~~~~~~~~~~~~~ 671 (1236)
+|+||++.+ |.|.++++.|+.....+..+...+ ..... ..+... ...+. .. . .+++...........
T Consensus 570 ~h~ELi~~~-G~Y~~lv~~Q~~~~~~~~~~~~~~~~~~~~~s~~~s~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~ 648 (1228)
T KOG0055|consen 570 THDELIALG-GIYSSLVRLQELEKAAEDEEEEESLKEERSRSLKSSSSSPSLSRGSNRSNLLSVKPEGEDPEEPVSEEDE 648 (1228)
T ss_pred CHHHHHhcc-chHHHHHHHHhhhhhhhccccccchhhhhhhccccccccccccCCccccccccccccccccccccccccc
Confidence 999999995 999999999976543321110000 00000 000000 00000 00 0 000000000011114
Q ss_pred cchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch-hHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 672 DVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPK-EELMRHSKHWALMFVALGAASLLTSPLSM 750 (1236)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 750 (1236)
..++++++++++|+|+.+++|.+++++.|..+|+++++++.++..+..++ +........|.++|++++++.++..+++.
T Consensus 649 ~~s~~~i~k~~~pe~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~~~~~~~~~~~~~al~f~~l~~~~~i~~~~q~ 728 (1228)
T KOG0055|consen 649 KVSFWRIFKLNKPEWPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPPDDDELKREVRAWALIFLGLGIVSGITNFLQH 728 (1228)
T ss_pred cccHHHHHHhccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67899999999999999999999999999999999999999999988554 34454555699999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 751 YCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKAC 830 (1236)
Q Consensus 751 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~ 830 (1236)
|+|.+++++++.|+|.++|+++++++++|||.++|+ |.|.+|+.+|...++..+++.+..+++++..++++++++|+++
T Consensus 729 ~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~ns-g~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~~~ 807 (1228)
T KOG0055|consen 729 YFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENS-GALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFIYG 807 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccc-hHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHH
Q 040099 831 WQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQ 910 (1236)
Q Consensus 831 ~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~ 910 (1236)
|++++++++..|++++..+.+.+.+.....+.+...+++.+...|+++|+|||++|+.|+++.+.|.+.++.+.+...++
T Consensus 808 W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~~~ 887 (1228)
T KOG0055|consen 808 WRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSFKR 887 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 911 GLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQ 990 (1236)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 990 (1236)
..+.++.+++++++.++.+++++|+|++++..|.+++.+++.+++++.+.+..+++..++.|++.++..|+.++++++++
T Consensus 888 ~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~dr 967 (1228)
T KOG0055|consen 888 GLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEILDR 967 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE
Q 040099 991 VSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070 (1236)
Q Consensus 991 ~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I 1070 (1236)
+|++++..+.+...++..|+|+|+||+|+||+||+.+||+|+||+|++||++||||||||||||++.||.|||||.+|.|
T Consensus 968 ~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V 1047 (1228)
T KOG0055|consen 968 KPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKV 1047 (1228)
T ss_pred CCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 99877655444445678899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCC
Q 040099 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQL 1135 (1236)
Q Consensus 1071 ~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~L 1135 (1236)
.|||+||+++++++||++||+|+|||.||++||||||. +.||+|+||.+||+||||.|||+|.+|
T Consensus 1048 ~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~QL 1127 (1228)
T KOG0055|consen 1048 KIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGVQL 1127 (1228)
T ss_pred EECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccCcC
Confidence 99999999999999999999999999999999999994 789999999999999999999999999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 040099 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1136 SGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt 1215 (1236)
|||||||||||||++|||+||||||||||||.++|+.||++|+++..+||+|+|||||+||++||.|+|+++|+|+|+||
T Consensus 1128 SGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~Gt 1207 (1228)
T KOG0055|consen 1128 SGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQGT 1207 (1228)
T ss_pred CchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHhhccCcccHHhhhccCC
Q 040099 1216 HESLISTKNGIYTSLIEPHTT 1236 (1236)
Q Consensus 1216 ~~eLl~~~~g~y~~L~~~q~~ 1236 (1236)
|++|+++ +|.|++|++.|.+
T Consensus 1208 H~~L~~~-~G~Y~~Lv~~q~~ 1227 (1228)
T KOG0055|consen 1208 HDELLAK-RGIYFRLVQLQSS 1227 (1228)
T ss_pred HHHHHhC-CCchHHHhhhccC
Confidence 9999995 9999999998864
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-176 Score=1743.37 Aligned_cols=1182 Identities=30% Similarity=0.500 Sum_probs=1012.6
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040099 43 GRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASF 122 (1236)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1236)
.+.++.++|+|..+.++.+++++++++++.+++.|++|+++++++|.+... ..+..+++++++++++.+++.|
T Consensus 43 ~~~~~~~~~~~~~~~~~~~~~i~~i~~~~~~~~~p~~~~i~g~iid~~~~~-------~~~~~~~~~~~~~~i~~~~~~~ 115 (1466)
T PTZ00265 43 QKIPFFLPFKCLPASHRKLLGVSFVCATISGGTLPFFVSVFGVIMKNMNLG-------ENVNDIIFSLVLIGIFQFILSF 115 (1466)
T ss_pred ccccHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------chHHHHHHHHHHHHHHHHHHHH
Confidence 456799999999888888889999999999999999999999999976421 1122334556677778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 123 FQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFF 202 (1236)
Q Consensus 123 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1236)
++.+++.++++++..++|.++|+|++++|++|||+. ++|++++|+++|++.+++.++..+..++..+++++++++++|+
T Consensus 116 ~~~~~~~~~~~~~~~~lR~~~~~~ll~~~~~~fd~~-~~~~l~s~l~~d~~~i~~~i~~~~~~~~~~~~~~i~~~i~~~~ 194 (1466)
T PTZ00265 116 ISSFCMDVVTTKILKTLKLEFLKSVFYQDGQFHDNN-PGSKLTSDLDFYLEQVNAGIGTKFITIFTYASAFLGLYIWSLF 194 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 040099 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282 (1236)
Q Consensus 203 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 282 (1236)
++|+|++++++++|+++++..++.+++++..++.++..+++++.+.|+++|+++||+|+.|+.+.++|++..++..+...
T Consensus 195 ~sw~Lalv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~f~~~~~~~~~~~~ 274 (1466)
T PTZ00265 195 KNARLTLCITCVFPLIYICGVICNKKVKINKKTSLLYNNNTMSIIEEALVGIRTVVSYCGEKTILKKFNLSEKLYSKYIL 274 (1466)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHhccCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhc--------CcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEK--------GYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAA 354 (1236)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g--------~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 354 (1236)
+.....++..++..++.++++++++|+|++++.+| .+++|++++++++.+....++..+.+.+..++++.+|
T Consensus 275 k~~~~~~~~~~~~~~~~~~~~~l~~~~G~~lv~~g~~~~~~~~~~t~g~v~~~~~~~l~~~~~l~~i~~~~~~~~~a~~a 354 (1466)
T PTZ00265 275 KANFMESLHIGMINGFILASYAFGFWYGTRIIISDLSNQQPNNDFHGGSVISILLGVLISMFMLTIILPNITEYMKSLEA 354 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999899999999999999999999999986 5899999999888887777778888889999999999
Q ss_pred HHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 355 AFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 355 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++|++++++.+|+++... .+...+. .+.|+|+||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|+
T Consensus 355 ~~ri~~ii~~~~~~~~~~-~~~~~~~-~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~ 432 (1466)
T PTZ00265 355 TNSLYEIINRKPLVENND-DGKKLKD-IKKIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIE 432 (1466)
T ss_pred HHHHHHHHcCCCCCCCCC-CCccCCC-CCcEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHH
Confidence 999999999887654321 1122222 24799999999998654457999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEE-CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC---------------------------
Q 040099 435 RFYDPQAGEVLI-DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--------------------------- 486 (1236)
Q Consensus 435 ~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--------------------------- 486 (1236)
|+|+|++|+|++ ||+++++++.+++|++||||+|+|.||++||+|||.+|.+
T Consensus 433 gl~~p~~G~I~i~~g~~i~~~~~~~lr~~Ig~V~Q~~~LF~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 (1466)
T PTZ00265 433 RLYDPTEGDIIINDSHNLKDINLKWWRSKIGVVSQDPLLFSNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRN 512 (1466)
T ss_pred HhccCCCCeEEEeCCcchhhCCHHHHHHhccEecccccchhccHHHHHHhcCCCccccchhccccccccccccccccccc
Confidence 999999999999 5799999999999999999999999999999999999742
Q ss_pred ------------------------------CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 487 ------------------------------HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 487 ------------------------------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
.+++++++++++.+++++|+.++|+||||.+|++|.+|||||||||+|||
T Consensus 513 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIAR 592 (1466)
T PTZ00265 513 SCRAKCAGDLNDMSNTTDSNELIEMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIAR 592 (1466)
T ss_pred cccccccchhhhcccccchhhhhhcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHH
Confidence 24568899999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECC-----------------
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQG----------------- 597 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G----------------- 597 (1236)
||+++|+|||||||||+||+++++.|++.|+++. +|+|+|+||||+++++.||+|++|++|
T Consensus 593 All~~P~ILlLDEpTSaLD~~se~~i~~~L~~~~~~~g~TvIiIsHrls~i~~aD~Iivl~~g~~g~~~~~~~~~~~~~~ 672 (1466)
T PTZ00265 593 AIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITIIIAHRLSTIRYANTIFVLSNRERGSTVDVDIIGEDPTK 672 (1466)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhhcCCCEEEEEeCCHHHHHhCCEEEEEeCCccccccccccccccccc
Confidence 9999999999999999999999999999999986 489999999999999999999999986
Q ss_pred ------------------------------EEEEEeCcccccccccchhhhhHHhhhhhhcccc-c--c-cC---CCCCC
Q 040099 598 ------------------------------KIVEKGTHSELLENPYGAYNRLIRLQETCKESEK-S--A-VN---NSDSD 640 (1236)
Q Consensus 598 ------------------------------~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~-~--~-~~---~~~~~ 640 (1236)
+|+|+|+|+||++..+|.|+.+++.|........ . + .. .....
T Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ive~Gth~~L~~~~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~ 752 (1466)
T PTZ00265 673 DNKENNNKNNKDDNNNNNNNNNNKINNAGSYIIEQGTHDALMKNKNGIYYTMINNQKVSSKKSSNNDNDKDSDMKSSAYK 752 (1466)
T ss_pred cccccccccccccccccccccccccccCCceeEeeCCHHHHHhccCCcHHHHHhhhcccccccccccccccccccccccc
Confidence 5999999999998448999999988754321110 0 0 00 00000
Q ss_pred CCC-CC--CC------CCCCC----CCCCcCCC--Cccccc-c----------CCCCcchhHHHhhhcCCchHHHHHHHH
Q 040099 641 NQP-FA--SP------KITTP----KQSETESD--FPASEK-A----------KMPPDVSLSRLAYLNSPEVPALLLGAI 694 (1236)
Q Consensus 641 ~~~-~~--~~------~~~~~----~~~~~~~~--~~~~~~-~----------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1236)
... .. .. ....+ ......+. ...... + ..+....+.+++....+.++.++++++
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 832 (1466)
T PTZ00265 753 DSERGYDPDEMNGNSKHENESASNKKSCKMSDENASENNAGGKLPFLRNLFKRKPKAPNNLRIVYREIFSYKKDVTIIAL 832 (1466)
T ss_pred ccccccccccccccccccccccccccccccccccccchhccccchhhhhccccccccchhHHHHHHHHHHHHHHHHHHHH
Confidence 000 00 00 00000 00000000 000000 0 001111344445555556666888888
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 695 ASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVY 774 (1236)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 774 (1236)
++++.+.+.|+++++++.+++.+... .........|.+++++++++.+++.+++.|++.++++++..++|.++|+++++
T Consensus 833 ~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~l~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~lR~~lf~~ll~ 911 (1466)
T PTZ00265 833 SILVAGGLYPVFALLYAKYVSTLFDF-ANLEANSNKYSLYILVIAIAMFISETLKNYYNNVIGEKVEKTMKRRLFENILY 911 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999876532 12223355678888888888999999999999999999999999999999999
Q ss_pred CCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 775 MEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKS 854 (1236)
Q Consensus 775 ~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 854 (1236)
+|++|||+.++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+++++++++|++........+.
T Consensus 912 ~~~~~fd~~~~~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~~~~l~l~~~~~~~~~~~~~~~~~~~ 991 (1466)
T PTZ00265 912 QEISFFDQDKHAPGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYFCPIVAAVLTGTYFIFMRVFAIRARL 991 (1466)
T ss_pred CCHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999997778999999999999999999999999999999999999999999999999988776555444333222221
Q ss_pred HhHHHH--H-------------HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q 040099 855 MKGFSA--N-------------AENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFG 919 (1236)
Q Consensus 855 ~~~~~~--~-------------~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 919 (1236)
...... . .++...+....+.|+++|+++||+|+.|+++.++|.+..+...+...+...+.++.++
T Consensus 992 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1466)
T PTZ00265 992 TANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDYFCNLIEKAIDYSNKGQKRKTLVNSMLWG 1071 (1466)
T ss_pred HHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111110 0 1233556788999999999999999999999999999999999888889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcc
Q 040099 920 LSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEY 999 (1236)
Q Consensus 920 ~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~ 999 (1236)
+.+++.+++.++++|+|++++..|.+++|++++++.++.+...++..+.++++++.++..+++|++++++.+++.+..+.
T Consensus 1072 ~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~a~~a~~ri~~ll~~~~~~~~~~~ 1151 (1466)
T PTZ00265 1072 FSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLKGDSENAKLSFEKYYPLIIRKSNIDVRDN 1151 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCcCCCCCC
Confidence 99999999999999999999999999999999988777776677888999999999999999999999987654422111
Q ss_pred ccCc---cCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----------
Q 040099 1000 TGRT---LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP----------- 1065 (1236)
Q Consensus 1000 ~~~~---~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~----------- 1065 (1236)
.+.. ++...|.|+|+||+|+||++|+.+||+|+||+|+|||++|||||||||||||+++|+|||+|
T Consensus 1152 ~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~ 1231 (1466)
T PTZ00265 1152 GGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNE 1231 (1466)
T ss_pred cccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCccccccccccc
Confidence 1111 22346789999999999987666899999999999999999999999999999999999999
Q ss_pred -------------------------------------------CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhh
Q 040099 1066 -------------------------------------------SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102 (1236)
Q Consensus 1066 -------------------------------------------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1102 (1236)
++|+|+|||+||+++++++||++|+||||||+||+||
T Consensus 1232 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~~~lR~~i~~V~Qep~LF~gT 1311 (1466)
T PTZ00265 1232 HTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNLKDLRNLFSIVSQEPMLFNMS 1311 (1466)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCHHHHHhhccEeCCCCcccccc
Confidence 6999999999999999999999999999999999999
Q ss_pred HHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040099 1103 IRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1103 IreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
|||||. +.|++++||.+||+||||.|||+|.+|||||||||||||||+|+|+|||||||||+||+
T Consensus 1312 IreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~ 1391 (1466)
T PTZ00265 1312 IYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDS 1391 (1466)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCH
Confidence 999994 67899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeC----CEE-EEecChhHHhhccCcccHHhhhccC
Q 040099 1168 ESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQ----GMI-VEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~----G~I-ve~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+||+.|+++|++.. +++|+|+||||++++++||+|+||++ |++ +|+|+|+||+++++|.|++|++.|+
T Consensus 1392 ~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e~Gth~eLl~~~~g~Y~~l~~~~~ 1466 (1466)
T PTZ00265 1392 NSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQAHGTHEELLSVQDGVYKKYVKLAK 1466 (1466)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEEecCHHHHHhcCCChHHHHHhhcC
Confidence 99999999999984 68999999999999999999999999 995 4999999999844899999998764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-160 Score=1511.20 Aligned_cols=1121 Identities=23% Similarity=0.279 Sum_probs=862.6
Q ss_pred HHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhH
Q 040099 76 VPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFF 155 (1236)
Q Consensus 76 ~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f 155 (1236)
.-..|.+++.+++.+...... ...-..+++.+++..++..++.--..+...++|.++-..+-..+|+|.++++-..-
T Consensus 217 ~~~~P~lL~~li~~~~~~~~~---~~~g~~~a~~lf~~~~l~~l~~~~~~~~~~~~g~r~R~al~~~IY~K~L~ls~~~~ 293 (1381)
T KOG0054|consen 217 GFVGPLLLKKLILFFSEKRLP---LNNGYLLAVLLFLASLLQSLLLHQYFFVSFRVGMRLRSALISAIYRKALRLSNSAR 293 (1381)
T ss_pred ccccHHHHHHHHHHhcCCCcc---cchhHHHHHHHHHHHHHHHHHHhHHHHHHHhhhhhHHHHHHHHHHHhhhcCchhhc
Confidence 445567889999876543110 01111112222222222222221122333445555555555667888888887766
Q ss_pred hccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 156 DKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQ 235 (1236)
Q Consensus 156 ~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~ 235 (1236)
... .+|+++|.++.|++++.++... +..+....+.+++++.+++..--.-+++.++++.+++.+..++++++++...+
T Consensus 294 ~~~-t~G~ivNlms~D~~ri~~~~~~-~h~~w~~Plqi~~~l~lLy~~LG~sa~~G~~~~il~~p~n~~~a~~~~~~q~~ 371 (1381)
T KOG0054|consen 294 GET-TVGEIVNLMSVDAQRLSDAACF-LHLLWSAPLQIILALYLLYGLLGPSALAGVAVMVLLIPLNSFLAKKIAKFQKR 371 (1381)
T ss_pred cCC-CcchhhhhhhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566 8999999999999999998643 34445555555555444443333335556666666777788899999999999
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH-H
Q 040099 236 KQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKL-I 314 (1236)
Q Consensus 236 ~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~-v 314 (1236)
..+..+++...++|.++|||+||.|+||+.+.++.++.++++.+...|.....++...+..+...++.+ +.++.+. .
T Consensus 372 ~m~~~D~Rik~~nEiL~~IkviK~yaWE~~F~~~I~~~R~~El~~lrk~~~~~~~~~~~~~~~p~lv~~--~tF~~~v~~ 449 (1381)
T KOG0054|consen 372 LMKRKDERIKLMNEILNGIKVIKLYAWEKPFLKKIEDLRQKELKLLRKSAYLSALNSFLNFFSPVLVSV--VTFVVFVLL 449 (1381)
T ss_pred HhhhhhHHHHHHHHHHhhhHhhhhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHhhc
Confidence 999999999999999999999999999999999999999999999888888887776655444444333 3344444 4
Q ss_pred HhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEEC
Q 040099 315 LEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSY 394 (1236)
Q Consensus 315 ~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y 394 (1236)
..+.++....++.+.++..+-.|+..++..+..+.++.+|.+|+.+++..++... ......+..+.+..++++|.+|+|
T Consensus 450 ~~~~lt~~~aF~slalfniLr~pl~~~P~~i~~~vqa~VS~~Ri~~fl~~~e~~~-~~~~~~~~~~~~~~i~i~~~sfsW 528 (1381)
T KOG0054|consen 450 LGNLLTASTAFTSLALFNILRFPLFMLPSVISQLVQAKVSLKRLKEFLLSEELDP-DSVERSPDEAGENAIEIKNGSFSW 528 (1381)
T ss_pred cCccccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccCc-cccccCCCCCCCceEEEeeeeEec
Confidence 5667888888888888888889999999999999999999999999998654322 211111222334579999999999
Q ss_pred CCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc
Q 040099 395 PARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS 474 (1236)
Q Consensus 395 ~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~ 474 (1236)
++.+..+.|+||||+|++|+.+|||||.|||||+|+..|+|..++.+|++.++| .++||||+||+|+
T Consensus 529 ~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g-------------siaYv~Q~pWI~n 595 (1381)
T KOG0054|consen 529 DSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG-------------SVAYVPQQPWIQN 595 (1381)
T ss_pred CCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-------------eEEEeccccHhhC
Confidence 864445699999999999999999999999999999999999999999999998 5999999999999
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCC
Q 040099 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~l 554 (1236)
+||||||.||.|. ++++++++.+.|++..+++.||.|+.|.|||+|.+|||||||||+||||+|+|+||++||||.||+
T Consensus 596 gTvreNILFG~~~-d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinLSGGQKqRIsLARAVY~~adIYLLDDplSAV 674 (1381)
T KOG0054|consen 596 GTVRENILFGSPY-DEERYDKVIKACALKKDLEILPFGDLTEIGERGINLSGGQKQRISLARAVYQDADIYLLDDPLSAV 674 (1381)
T ss_pred CcHHHhhhcCccc-cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCCcHhHHHHHHHHHHHhccCCEEEEcCcchhh
Confidence 9999999999874 889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHH-HHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccc
Q 040099 555 DSESGRMVQ-EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSA 633 (1236)
Q Consensus 555 D~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~ 633 (1236)
|+|+.++|. ++++.+.++||+|+|||.++.+++||+|++|+||+|+++|+|+||++. .+.|.++..........+ ..
T Consensus 675 Dahvg~~if~~ci~~~L~~KT~ILVTHql~~L~~ad~Iivl~~G~I~~~Gty~el~~~-~~~~~~l~~~~~~~~~~~-~~ 752 (1381)
T KOG0054|consen 675 DAHVGKHIFEECIRGLLRGKTVILVTHQLQFLPHADQIIVLKDGKIVESGTYEELLKS-GGDFAELAHEEESEQEEE-AS 752 (1381)
T ss_pred hHhhhHHHHHHHHHhhhcCCEEEEEeCchhhhhhCCEEEEecCCeEecccCHHHHHhc-chhHHHHhhccchhhccc-cc
Confidence 999977765 567777889999999999999999999999999999999999999987 677777733222111111 00
Q ss_pred cCCCCCCCCCCCCCC-CCCC---CCCC---cC--CCCccccccCCCCcchhHHHhhhcCCchHHHHHH--HHHHHHhhHH
Q 040099 634 VNNSDSDNQPFASPK-ITTP---KQSE---TE--SDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLG--AIASMTNGII 702 (1236)
Q Consensus 634 ~~~~~~~~~~~~~~~-~~~~---~~~~---~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 702 (1236)
............... .... ..+. .. +....+++++..+.+++.-+..|.+...+.+... +++.+..-.+
T Consensus 753 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ee~~~G~v~~~vY~~Y~~a~~g~~~~~~~~~~~v~~~~~ 832 (1381)
T KOG0054|consen 753 EKDLESGESSRESESRSLESLSSEEEKSKDEKEEEDKLVQEEERETGKVSWSVYKKYIKAAGGFLLVLLILLLFVLTQVL 832 (1381)
T ss_pred cccccccccccchhhhhhhhhcccccccccccchhhHHHHHHHHhcCEeeHHHHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence 000000000000000 0000 0000 00 0001111223455666666655555433222221 2222222222
Q ss_pred HHHHHHHHHHHHHHhcCchhHHh--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc
Q 040099 703 IPIFGVMLAAMVNTLNEPKEELM--RHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWF 780 (1236)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~f 780 (1236)
.....++++.+.+.-. .... .....|..+|.+++++..++..++.+.+...+.++++.||.++++++++.||+||
T Consensus 833 ~~~~~~WLs~W~~~~~---~~~~~~~~~~~~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FF 909 (1381)
T KOG0054|consen 833 QIASNYWLSYWTDDGE---DNGTTTVSTSFYLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFF 909 (1381)
T ss_pred HHHHHHHHHHhcCCcc---cccccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhc
Confidence 2222333333322110 1111 3466789999999999999999999999999999999999999999999999999
Q ss_pred cccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 781 DEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSA 860 (1236)
Q Consensus 781 d~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~ 860 (1236)
|. +|+|+|+|||++|++.+|..++..+..++..++.++..+++..+..|.+.+ +++|+.+++.+++.. +.+.++
T Consensus 910 dt--TP~GRILNRFSkD~~~vD~~Lp~~~~~~~~~~~~~l~~~~vi~~~~P~fli---~~~pl~v~~~~~~~~-Y~~tsR 983 (1381)
T KOG0054|consen 910 DT--TPTGRILNRFSKDIDTVDVLLPFTLEFFLQSLLNVLGILVVISYVTPWFLI---AIIPLGVIYYFVQRY-YLATSR 983 (1381)
T ss_pred CC--CCccchhhhcccchHHHHHhhHHHHHHHHHHHHHHHHHHHHhhHHhHHHHH---HHHHHHHHHHHHHHH-HHHHhH
Confidence 95 899999999999999999999999999999999999999888887775544 444554444433333 333466
Q ss_pred HHHHH----HHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 861 NAENM----YEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVG 936 (1236)
Q Consensus 861 ~~~~~----~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 936 (1236)
+.++. ++...+|++|++.|+.|||||+.+++|.+++.+..|.+.+..+-....+.+. ++. +-.++..+++..+
T Consensus 984 eLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~rf~~~~~~~~D~~~~~~f~~~~a~RWl-a~R--le~ig~~~v~~~a 1060 (1381)
T KOG0054|consen 984 ELKRLESITRSPIYSHFSETLQGLSTIRAFGKEERFIQENDELIDENSRAFFLSISANRWL-AVR--LELLGNLVVLIAA 1060 (1381)
T ss_pred HHHHhhhcccchHHHhHHHHhcCcceeeeccccHHHHHHHHHHhhhhHHHHHHHHHHHHHH-HHH--HHHHHHHHHHHHH
Confidence 66665 4556899999999999999999999999999999999888765433322222 221 1222222222222
Q ss_pred HHHHh--hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc--CccCCccccEE
Q 040099 937 AKLVD--HKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTG--RTLENVMGEVQ 1012 (1236)
Q Consensus 937 ~~lv~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~--~~~~~~~g~I~ 1012 (1236)
...+. .+..+.|.+...+.+.......++.+.....+++..+.|.+|+.++.+.++|.+.+.+.. ++..|.+|+|+
T Consensus 1061 l~~vl~~~~~~~~g~vGLslsyal~lt~~l~~~vR~~~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~ 1140 (1381)
T KOG0054|consen 1061 LFAVLLPSGLISPGLVGLSLSYALQLTGLLQWLVRQSSELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIE 1140 (1381)
T ss_pred HHHHHccCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEE
Confidence 22222 222667877777777778888888888999999999999999999999776622222122 22345789999
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
|+|++.+|.+. .++|||||||+|+||||||||||||||||||+++|+|+.+|.+|+|.|||+||+++++++||+++++|
T Consensus 1141 f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsII 1219 (1381)
T KOG0054|consen 1141 FEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSII 1219 (1381)
T ss_pred EEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeee
Confidence 99999999754 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1093 SQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1093 ~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
||||+||+||+|+||+ +.++++++|+++|+|||+.|.|+|.|+|.||||++||||||||++|||+|
T Consensus 1220 PQdPvLFsGTvR~NLDPf~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvL 1299 (1381)
T KOG0054|consen 1220 PQDPVLFSGTVRFNLDPFDEYSDDEIWEALERCQLKDVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVL 1299 (1381)
T ss_pred CCCCceecCccccccCcccccCHHHHHHHHHHhChHHHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEE
Confidence 9999999999999995 78999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1159 DEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
|||||++|++|+..||++|++.|++||||+||||++||.+||||+|||+|+|+|+|+|++|++++++.|++++.+
T Consensus 1300 DEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l~~ 1374 (1381)
T KOG0054|consen 1300 DEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLLKE 1374 (1381)
T ss_pred ecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999876643
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-158 Score=1579.57 Aligned_cols=1133 Identities=20% Similarity=0.258 Sum_probs=846.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 63 LVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSF 142 (1236)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 142 (1236)
+++.++.++..++....|++++.++|.+... +.. . ..... +..+++..++..++..-..+...+++.++...++..
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~v~~~-~~~-~-~~~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~ 379 (1622)
T PLN03130 304 WLGGFFKIGNDLSQFVGPLLLNLLLESMQNG-EPA-W-IGYIY-AFSIFVGVVLGVLCEAQYFQNVMRVGFRLRSTLVAA 379 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-h-HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455555666666777788999999876432 110 0 11111 111111111111111111122446788888889999
Q ss_pred HHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040099 143 YLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAG 222 (1236)
Q Consensus 143 ~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~ 222 (1236)
+|+|+++++..++++. ++|++++++++|++.+++++. .+..++..++.+++++++++..-...+++.++++.+++.+.
T Consensus 380 i~~k~L~l~~~~~~~~-~~G~ivnl~s~Dv~~i~~~~~-~l~~l~~~pl~ii~~~~lL~~~lg~~~l~g~~v~~l~~~l~ 457 (1622)
T PLN03130 380 VFRKSLRLTHEGRKKF-TSGKITNLMTTDAEALQQICQ-QLHTLWSAPFRIIIAMVLLYQQLGVASLIGSLMLVLMFPIQ 457 (1622)
T ss_pred HHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999988 999999999999999999974 45666666666666555544322222222222333444556
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040099 223 VVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSA 302 (1236)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1236)
.++.+++++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++++..++..+...+.....++...+...+. .
T Consensus 458 ~~~~~~~~~~~~~~~~~~d~r~~~~~E~L~gi~~IK~~~~E~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~~--~ 535 (1622)
T PLN03130 458 TFIISKMQKLTKEGLQRTDKRIGLMNEVLAAMDTVKCYAWENSFQSKVQTVRDDELSWFRKAQLLSAFNSFILNSIP--V 535 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--H
Confidence 67788888889999999999999999999999999999999999999999888877776666655554433322221 1
Q ss_pred HHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCC
Q 040099 303 YGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIR 382 (1236)
Q Consensus 303 ~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 382 (1236)
.+.++++|++.+.+|.+|+|.+++++.++..+..|+..+...+..+.++.+|++||.++++.++..+... .......
T Consensus 536 ~v~~~~fg~~~~~~g~Lt~g~vf~~l~l~~~l~~pl~~l~~~i~~~~~a~~s~~RI~~~L~~~e~~~~~~---~~~~~~~ 612 (1622)
T PLN03130 536 LVTVVSFGVFTLLGGDLTPARAFTSLSLFAVLRFPLFMLPNLITQAVNANVSLKRLEELLLAEERVLLPN---PPLEPGL 612 (1622)
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccC---CcccCCC
Confidence 3456678999999999999999999988888899999999999999999999999999998654322111 1111123
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCeecCCCCHHHHhc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA-GEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~ 461 (1236)
+.|+++|++|+|+.++++++|+|+||+|++||+++||||||||||||+++|+|+++|++ |+|.+ |+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l-------------~~ 679 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI-------------RG 679 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE-------------cC
Confidence 46999999999985444679999999999999999999999999999999999999999 99985 45
Q ss_pred ceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
+|+||+|+||||++||||||.||+|. ++++++++++.|++++++..||+|++|.|||+|.+|||||||||+||||+|++
T Consensus 680 ~Iayv~Q~p~LfngTIreNI~fg~~~-d~e~y~~vl~a~~L~~di~~LP~Gd~T~IGe~G~~LSGGQKQRIaLARAly~~ 758 (1622)
T PLN03130 680 TVAYVPQVSWIFNATVRDNILFGSPF-DPERYERAIDVTALQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSN 758 (1622)
T ss_pred eEEEEcCccccCCCCHHHHHhCCCcc-cHHHHHHHHHHhCcHHHHHhCCCcccccccCCCCCCCHHHHHHHHHHHHHhCC
Confidence 89999999999999999999999874 88999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHH-HHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 542 PRILLLDEATSALDSESGRMVQ-EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~-~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
|+||||||||||||+++++.+. ++++...+++|+|+||||++.++.||+|++|++|+|+++|+|+|++++ ++.|.+++
T Consensus 759 ~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l~~aD~Ii~L~~G~i~e~Gt~~eL~~~-~~~~~~l~ 837 (1622)
T PLN03130 759 SDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFLSQVDRIILVHEGMIKEEGTYEELSNN-GPLFQKLM 837 (1622)
T ss_pred CCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHHHhCCEEEEEeCCEEEEeCCHHHHHhc-chhHHHHH
Confidence 9999999999999999998875 567777789999999999999999999999999999999999999986 68888887
Q ss_pred HhhhhhhcccccccCCC-C-CCCCCCCC---CC-C-CCCCCCCc--CCCCccccccCCCCcchhHHHhhhcCC-c-hHHH
Q 040099 621 RLQETCKESEKSAVNNS-D-SDNQPFAS---PK-I-TTPKQSET--ESDFPASEKAKMPPDVSLSRLAYLNSP-E-VPAL 689 (1236)
Q Consensus 621 ~~~~~~~~~~~~~~~~~-~-~~~~~~~~---~~-~-~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~ 689 (1236)
..+...++......... . ........ .. . .....+.. .......++++..+.+++..+..|.+. . ++.+
T Consensus 838 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~Y~~~~g~~~~~ 917 (1622)
T PLN03130 838 ENAGKMEEYVEENGEEEDDQTSSKPVANGNANNLKKDSSSKKKSKEGKSVLIKQEERETGVVSWKVLERYKNALGGAWVV 917 (1622)
T ss_pred HhcccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHhcCccCHHHHHHHHHHhccHHHH
Confidence 65432111100000000 0 00000000 00 0 00000000 000000111222333445545444332 2 2222
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 690 LLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCF 769 (1236)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 769 (1236)
.+.+++.++.........+++..+.+.... .......|..+|++++++..++.+++.+++.+.+.+++.++|.+++
T Consensus 918 ~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~----~~~~~~~~~~i~~~l~~~~~i~~~~~~~~~~~~~~~~~~~L~~~l~ 993 (1622)
T PLN03130 918 MILFLCYVLTEVFRVSSSTWLSEWTDQGTP----KTHGPLFYNLIYALLSFGQVLVTLLNSYWLIMSSLYAAKRLHDAML 993 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcccc----CCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222222222222222233333333332111 0122345777888888888889999999999999999999999999
Q ss_pred HHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH-
Q 040099 770 EKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITG- 848 (1236)
Q Consensus 770 ~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~- 848 (1236)
++++++|++||| .+++|+++||+++|++.++..++..+..++..++.+++.++++++.+|...+ +++|+.+++.
T Consensus 994 ~~ll~~p~~ffd--~~~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~~~~~~~~~---~~~pl~~~~~~ 1068 (1622)
T PLN03130 994 GSILRAPMSFFH--TNPLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIGIVSTISLW---AIMPLLVLFYG 1068 (1622)
T ss_pred HHHHcCCHHHhc--cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHH
Confidence 999999999999 5899999999999999999999999999999998888888887777764332 2333333222
Q ss_pred --HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 849 --HIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFF 926 (1236)
Q Consensus 849 --~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1236)
.++.+..+...+......+...+++.|+++|++|||+|+.++++.+++.+..+...+..........+...... .
T Consensus 1069 ~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~~~~~~wl~~~l~---~ 1145 (1622)
T PLN03130 1069 AYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNNIRFTLVNMSSNRWLAIRLE---T 1145 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---H
Confidence 22222223333333344556789999999999999999999988888877776655543332222212111111 1
Q ss_pred HHHHHHHHHHHHHHhhcC-CC-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccc
Q 040099 927 MAYAVTFYVGAKLVDHKQ-AT-----FTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYT 1000 (1236)
Q Consensus 927 ~~~~~~~~~g~~lv~~~~-~~-----~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 1000 (1236)
+..+++++.+...+..+. .. .+.+..++.+......++..+......++....+.+|+.++++.+++.+.....
T Consensus 1146 ~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~ls~~~~~~~~l~~l~~~~~~~e~~~~sveRi~e~~~~~~E~~~~~~~ 1225 (1622)
T PLN03130 1146 LGGLMIWLTASFAVMQNGRAENQAAFASTMGLLLSYALNITSLLTAVLRLASLAENSLNAVERVGTYIDLPSEAPLVIEN 1225 (1622)
T ss_pred HHHHHHHHHHHHHHHcccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccccccC
Confidence 122222333333343322 11 122222333444555666667777788899999999999999876654321111
Q ss_pred cCcc--CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc
Q 040099 1001 GRTL--ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1001 ~~~~--~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~ 1078 (1236)
..++ .+..|.|+|+||+|+|++. .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+||+
T Consensus 1226 ~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~ 1304 (1622)
T PLN03130 1226 NRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDIS 1304 (1622)
T ss_pred CCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecc
Confidence 1111 2346899999999999643 246999999999999999999999999999999999999999999999999999
Q ss_pred cCChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHH
Q 040099 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVA 1144 (1236)
Q Consensus 1079 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRla 1144 (1236)
++++++||++|++|||||+||+|||||||+ +.++++++|.++|+||||.|||+|.+||||||||||
T Consensus 1305 ~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~~~tdeei~~Al~~a~l~~~I~~lp~GLdt~Vge~G~nLSgGQrQrla 1384 (1622)
T PLN03130 1305 KFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAGENFSVGQRQLLS 1384 (1622)
T ss_pred cCCHHHHHhccEEECCCCccccccHHHHhCcCCCCCHHHHHHHHHHcCcHHHHHhCccccCccccCCCCCCCHHHHHHHH
Confidence 999999999999999999999999999994 678999999999999999999999999999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1145 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
|||||+|+|+|||||||||+||++||+.||++|++.+++||+|+||||++|+++||||+||++|+|+|+|+|+||+++++
T Consensus 1385 LARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~DrIlVLd~G~IvE~Gt~~eLl~~~~ 1464 (1622)
T PLN03130 1385 LARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDCDRILVLDAGRVVEFDTPENLLSNEG 1464 (1622)
T ss_pred HHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999767
Q ss_pred cccHHhhhcc
Q 040099 1225 GIYTSLIEPH 1234 (1236)
Q Consensus 1225 g~y~~L~~~q 1234 (1236)
|.|++|++.+
T Consensus 1465 g~f~~L~~~~ 1474 (1622)
T PLN03130 1465 SAFSKMVQST 1474 (1622)
T ss_pred CHHHHHHHHc
Confidence 9999999765
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-157 Score=1575.29 Aligned_cols=1131 Identities=19% Similarity=0.250 Sum_probs=848.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 63 LVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSF 142 (1236)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 142 (1236)
+++.++.++..++....|++++.++|.+... +.. . ... .++..+++..++..++.....+...+.+.++...++..
T Consensus 304 ~~~~~~~i~~~~~~~~~P~ll~~li~~~~~~-~~~-~-~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ir~~l~~~ 379 (1495)
T PLN03232 304 WLGGIFKIGHDLSQFVGPVILSHLLQSMQEG-DPA-W-VGY-VYAFLIFFGVTFGVLCESQYFQNVGRVGFRLRSTLVAA 379 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-Ccc-c-hHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555666666767788999999976432 110 0 111 11111111122222222222233357788888888999
Q ss_pred HHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH---HHH
Q 040099 143 YLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIP---PLV 219 (1236)
Q Consensus 143 ~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p---~~~ 219 (1236)
+|+|+++++..++++. ++|++++++++|++.+++++ ..+..++..++.+++++++++ +.+++++++.++ +++
T Consensus 380 i~~k~l~l~~~~~~~~-~~G~i~n~ls~Dv~~i~~~~-~~l~~l~~~p~~ii~~~~~l~---~~lg~~~l~~~~v~~l~~ 454 (1495)
T PLN03232 380 IFHKSLRLTHEARKNF-ASGKVTNMITTDANALQQIA-EQLHGLWSAPFRIIVSMVLLY---QQLGVASLFGSLILFLLI 454 (1495)
T ss_pred HHHHHhcCChhhcCCC-CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH---HHHhHHHHHHHHHHHHHH
Confidence 9999999999999988 99999999999999999986 455556655555554444332 334443333322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 040099 220 IAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFII 299 (1236)
Q Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 299 (1236)
.+..++.++.++..++.++..+++.+.+.|.++|+++||+|++|+.+.+++++..+++.+...+.....++...+.....
T Consensus 455 pl~~~~~~~~~~~~~~~~~~~d~r~~~~~E~l~gi~~IK~~~~e~~~~~~~~~~r~~e~~~~~~~~~~~~~~~~~~~~~~ 534 (1495)
T PLN03232 455 PLQTLIVRKMRKLTKEGLQWTDKRVGIINEILASMDTVKCYAWEKSFESRIQGIRNEELSWFRKAQLLSAFNSFILNSIP 534 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566788899999999999999999999999999999999999999999999998888887777666555433222211
Q ss_pred HHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCC
Q 040099 300 FSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLD 379 (1236)
Q Consensus 300 ~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~ 379 (1236)
..+.++++|++++.+|.+|+|.+++++.++..+..|+..++..+..+.++.+|++|+.++++.+++.+... ....
T Consensus 535 --~~~~~~~fg~~~v~~~~lt~g~vf~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~L~~~~~~~~~~---~~~~ 609 (1495)
T PLN03232 535 --VVVTLVSFGVFVLLGGDLTPARAFTSLSLFAVLRSPLNMLPNLLSQVVNANVSLQRIEELLLSEERILAQN---PPLQ 609 (1495)
T ss_pred --HHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccc---CCcC
Confidence 23335688999999999999999999999999999999999999999999999999999998765432111 1111
Q ss_pred CCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 380 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
...+.|+++|++|+|++++++++|+|+||+|++||+++||||||||||||+++|+|+|+|++|.+. ++
T Consensus 610 ~~~~~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~------------~~ 677 (1495)
T PLN03232 610 PGAPAISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSV------------VI 677 (1495)
T ss_pred CCCCcEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEE------------Ee
Confidence 123479999999999854456799999999999999999999999999999999999999998763 25
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
|++|+||+|+||||++||||||+||++ .++++++++++.|++++++..+|+|++|.|||+|.+||||||||||||||++
T Consensus 678 ~~~Iayv~Q~p~Lf~gTIreNI~fg~~-~~~e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQkQRIaLARAly 756 (1495)
T PLN03232 678 RGSVAYVPQVSWIFNATVRENILFGSD-FESERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQKQRVSMARAVY 756 (1495)
T ss_pred cCcEEEEcCccccccccHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHHHHHHHHHHHHh
Confidence 779999999999999999999999986 6899999999999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHH-HHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQE-ALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~-~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
++|+||||||||||||+++++.+.+ +++...+++|+|+||||++.++.||+|++|++|+|+++|+|+|++++ ++.|.+
T Consensus 757 ~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l~~aD~Ii~L~~G~i~~~Gt~~eL~~~-~~~~~~ 835 (1495)
T PLN03232 757 SNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFLPLMDRIILVSEGMIKEEGTFAELSKS-GSLFKK 835 (1495)
T ss_pred cCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhHHhCCEEEEEeCCEEEEecCHHHHHhc-chhHHH
Confidence 9999999999999999999998865 46666789999999999999999999999999999999999999987 788988
Q ss_pred hHHhhhhhhcccccccCCCCCCC-CCCCCCC-CCCC-CCC--CcC-CCCccccccCCCCcchhHHHhhhcCCch--HHHH
Q 040099 619 LIRLQETCKESEKSAVNNSDSDN-QPFASPK-ITTP-KQS--ETE-SDFPASEKAKMPPDVSLSRLAYLNSPEV--PALL 690 (1236)
Q Consensus 619 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~-~~~--~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 690 (1236)
+++.+...++..++....+.... ....... .... ... ... +.....++++..+.+++..+++|.+... +.+.
T Consensus 836 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vy~~y~~~~~~~~~~~ 915 (1495)
T PLN03232 836 LMENAGKMDATQEVNTNDENILKLGPTVTIDVSERNLGSTKQGKRGRSVLVKQEERETGIISWNVLMRYNKAVGGLWVVM 915 (1495)
T ss_pred HHHhcccccccccccccccccccccccccccccccccccccccccchhhhhhHHHHhcCcccHHHHHHHHHHcCcHHHHH
Confidence 88655421111100000000000 0000000 0000 000 000 0000011122233445555555544322 2222
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 691 LGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFE 770 (1236)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 770 (1236)
+.+++.++..+......+++..+.+. ..........|+.+|++++++..++.+++.+++...+.+++.++|.++++
T Consensus 916 ~~~~~~~~~~~~~~~~~~wl~~w~~~----~~~~~~~~~~~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~ 991 (1495)
T PLN03232 916 ILLVCYLTTEVLRVSSSTWLSIWTDQ----STPKSYSPGFYIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLN 991 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc----cCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 21111111111111222222222211 10001123568888999999999999999999999999999999999999
Q ss_pred HHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH--
Q 040099 771 KVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITG-- 848 (1236)
Q Consensus 771 ~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~-- 848 (1236)
+++++|++||| .+++|+++||+++|++.++..++..+..++..++.+++++++++..++...+ +++|+.+++.
T Consensus 992 ~ll~~p~~ff~--~~~~G~ilnr~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~~~~~~~~~~~---~~~~~~~~~~~~ 1066 (1495)
T PLN03232 992 SILRAPMLFFH--TNPTGRVINRFSKDIGDIDRNVANLMNMFMNQLWQLLSTFALIGTVSTISLW---AIMPLLILFYAA 1066 (1495)
T ss_pred HHHcCCeeeeC--cCCchHHHHHhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 99999999999 5899999999999999999999999998888888888777777666653322 2233333222
Q ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 849 -HIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFM 927 (1236)
Q Consensus 849 -~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 927 (1236)
.++.+..+...+......+...+++.|+++|+++||+|+.++++.+++.+..+...+..........+ .... +..+
T Consensus 1067 ~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w-l~~~--~~~~ 1143 (1495)
T PLN03232 1067 YLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYDRMAKINGKSMDNNIRFTLANTSSNRW-LTIR--LETL 1143 (1495)
T ss_pred HHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHH--HHHH
Confidence 22222223333344445566789999999999999999999998888887777666544332222211 1111 1112
Q ss_pred HHHHHHHHHHHHHh-hcCC----CHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc
Q 040099 928 AYAVTFYVGAKLVD-HKQA----TFTE-VFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTG 1001 (1236)
Q Consensus 928 ~~~~~~~~g~~lv~-~~~~----~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~ 1001 (1236)
+.+++++.+...+. .+.+ .+.. +..++.+......++..+...+.+++.+..+.+|+.++++.+++.+......
T Consensus 1144 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~ 1223 (1495)
T PLN03232 1144 GGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTLLSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENN 1223 (1495)
T ss_pred HHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCC
Confidence 22223333333333 2322 1122 2223344445566777888888999999999999999998766543211111
Q ss_pred Ccc--CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1002 RTL--ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1002 ~~~--~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
.++ .+..|.|+|+||+|+|++. .++||+|+||+|+|||+||||||||||||||+++|+|+|+|++|+|+|||+|+++
T Consensus 1224 ~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~ 1302 (1495)
T PLN03232 1224 RPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAK 1302 (1495)
T ss_pred CCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhh
Confidence 111 2346889999999999643 2469999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHH
Q 040099 1080 LQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1080 i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaL 1145 (1236)
+++++||++|++|||||+||+|||||||+ +.++++++++++|+||||.|||+|.+|||||||||||
T Consensus 1303 i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaL 1382 (1495)
T PLN03232 1303 FGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDADLWEALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSL 1382 (1495)
T ss_pred CCHHHHHhhcEEECCCCeeeCccHHHHcCCCCCCCHHHHHHHHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHH
Confidence 99999999999999999999999999994 6789999999999999999999999999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCc
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++|+++||||+||++|+|+|+|+|+||+++++|
T Consensus 1383 ARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~ 1462 (1495)
T PLN03232 1383 ARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTS 1462 (1495)
T ss_pred HHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998667
Q ss_pred ccHHhhhcc
Q 040099 1226 IYTSLIEPH 1234 (1236)
Q Consensus 1226 ~y~~L~~~q 1234 (1236)
.|++|++.+
T Consensus 1463 ~f~~l~~~~ 1471 (1495)
T PLN03232 1463 AFFRMVHST 1471 (1495)
T ss_pred HHHHHHHHh
Confidence 999999765
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-152 Score=1528.44 Aligned_cols=1140 Identities=19% Similarity=0.227 Sum_probs=877.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 64 VGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFY 143 (1236)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 143 (1236)
.++++.++..++....|++++.++|.+....+. .. .. ..++..++++.++..++.....+...+.+.++...++..+
T Consensus 321 ~~~~~~l~~~~~~~~~P~ll~~li~~~~~~~~~-~~-~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ir~~L~~~i 397 (1522)
T TIGR00957 321 MSFCFKAIHDLMMFIGPQILSLLIRFVNDPMAP-DW-QG-YFYTGLLFVCACLQTLILHQYFHICFVSGMRIKTAVMGAV 397 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-cc-hH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555566666778899999976432111 00 01 1112222233333344443344556778999999999999
Q ss_pred HHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 040099 144 LETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV 223 (1236)
Q Consensus 144 ~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~ 223 (1236)
|+|+++++..++++. ++|++++++++|++++.++. ..+..++..++.+++++++++..-...+++.++++++++.+..
T Consensus 398 y~K~L~l~~~~~~~~-~~G~i~nl~s~D~~~i~~~~-~~~~~~~~~~~~i~~~~~ll~~~~g~~~l~~l~~~~~~~~~~~ 475 (1522)
T TIGR00957 398 YRKALVITNSARKSS-TVGEIVNLMSVDAQRFMDLA-TYINMIWSAPLQVILALYFLWLNLGPSVLAGVAVMVLMVPLNA 475 (1522)
T ss_pred HHHHHhCChhhcCCC-CHHHHHHHHHHhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 999999999999988 99999999999999999865 3455566666665555554433322244555566667777778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Q 040099 224 VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAY 303 (1236)
Q Consensus 224 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 303 (1236)
++.+++++..++.++..++..+.+.|.++||++||+|++|+.+.+++++.++++.+...+......+........ ...
T Consensus 476 ~~~~~~~~~~~~~~~~~d~r~~~~~E~l~~ik~IK~~~~e~~~~~~i~~~r~~e~~~~~~~~~~~~~~~~~~~~~--~~~ 553 (1522)
T TIGR00957 476 VMAMKTKTYQVAHMKSKDNRIKLMNEILNGIKVLKLYAWELAFLDKVEGIRQEELKVLKKSAYLHAVGTFTWVCT--PFL 553 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHH
Confidence 888999999999999999999999999999999999999999999999998888777666655544432221111 112
Q ss_pred HHHHHHHHHHHHh--cCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCC
Q 040099 304 GLGVWYGAKLILE--KGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDI 381 (1236)
Q Consensus 304 ~~~~~~g~~~v~~--g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~ 381 (1236)
+.++.++.+.+.. +.++.+.+++.+.++..+..|+..+...+..++++.+|.+||.++++.+++.+.........+..
T Consensus 554 ~~~~~f~~~~~~~~~~~l~~~~~f~~l~l~~~l~~pl~~l~~~~~~~~~a~~s~~Ri~~~l~~~~~~~~~~~~~~~~~~~ 633 (1522)
T TIGR00957 554 VALITFAVYVTVDENNILDAEKAFVSLALFNILRFPLNILPMVISSIVQASVSLKRLRIFLSHEELEPDSIERRTIKPGE 633 (1522)
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccccccccccCCCC
Confidence 2233456666664 56889988888877777888999999999999999999999999998654322110000000111
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 461 (1236)
.+.|+++|++|+|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 634 ~~~i~~~~~~~~~~~~-~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g------------- 699 (1522)
T TIGR00957 634 GNSITVHNATFTWARD-LPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG------------- 699 (1522)
T ss_pred CCcEEEEEeEEEcCCC-CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC-------------
Confidence 2369999999999742 35799999999999999999999999999999999999999999999987
Q ss_pred ceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
+|+||+|+||+|++||+|||.+|.+ .++++++++++.|++.+++..+|+|++|.+|++|.+|||||||||+||||++++
T Consensus 700 ~i~yv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~l~~~l~~~~~g~~t~ig~~g~~LSGGQkqRiaLARAl~~~ 778 (1522)
T TIGR00957 700 SVAYVPQQAWIQNDSLRENILFGKA-LNEKYYQQVLEACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSN 778 (1522)
T ss_pred EEEEEcCCccccCCcHHHHhhcCCc-cCHHHHHHHHHHhCCHHHHHhcCCCCCceecCCCCCCCHHHHHHHHHHHHHhcC
Confidence 5999999999999999999999976 467888899999999999999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHH---HccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDR---VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~---~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
|+|+|||||||+||+++++.+.+.+.+ +.+++|+|+|||+++.+..||+|++|++|+|+++|+|++++++ ++.|.+
T Consensus 779 ~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~~D~ii~l~~G~i~~~g~~~~l~~~-~~~~~~ 857 (1522)
T TIGR00957 779 ADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQVDVIIVMSGGKISEMGSYQELLQR-DGAFAE 857 (1522)
T ss_pred CCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhhCCEEEEecCCeEEeeCCHHHHHhc-chhHHH
Confidence 999999999999999999999998853 4568999999999999999999999999999999999999986 678888
Q ss_pred hHHhhhhhhccc--ccc------cCCCCC---CC---------CCCCC----CCCCCCC-------C-C-CcCC-C----
Q 040099 619 LIRLQETCKESE--KSA------VNNSDS---DN---------QPFAS----PKITTPK-------Q-S-ETES-D---- 660 (1236)
Q Consensus 619 ~~~~~~~~~~~~--~~~------~~~~~~---~~---------~~~~~----~~~~~~~-------~-~-~~~~-~---- 660 (1236)
+...+...+..+ ++. .+.... +. ..... ....... . + +..+ +
T Consensus 858 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 937 (1522)
T TIGR00957 858 FLRTYAPDEQQGHLEDSWTALVSGEGKEAKLIENGMLVTDVVGKQLQRQLSASSSDSGDQSRHHGSSAELQKAEAKEETW 937 (1522)
T ss_pred HHHhhccccccccccccccccccccccccccccccccccccccchhhhhccccccccccccccccccccccccccccchh
Confidence 776443211100 000 000000 00 00000 0000000 0 0 0000 0
Q ss_pred CccccccCCCCcchhHHHhhhcCC-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHH
Q 040099 661 FPASEKAKMPPDVSLSRLAYLNSP-EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALG 739 (1236)
Q Consensus 661 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 739 (1236)
....++++..+.+.+..+++|.+. +++..++.+++.++...+.....+++..+.+..... ........|..+|++++
T Consensus 938 ~~~~~e~~~~g~v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~--~~~~~~~~~~~iy~~l~ 1015 (1522)
T TIGR00957 938 KLMEADKAQTGQVELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVN--GTQNNTSLRLSVYGALG 1015 (1522)
T ss_pred hhHHHHHHhcCcccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--CCCCCcchHHHHHHHHH
Confidence 000011112233344444433332 222222222222222233333444444444321100 00112335666888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 740 AASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATA 819 (1236)
Q Consensus 740 ~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~ 819 (1236)
++..++.++..+++.+.+.++++++|.+++++++++|++||| .+++|+++||+++|++.++..++..+..++..++.+
T Consensus 1016 i~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~--~~~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~ 1093 (1522)
T TIGR00957 1016 ILQGFAVFGYSMAVSIGGIQASRVLHQDLLHNKLRSPMSFFE--RTPSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNV 1093 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhHhc--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888999999999999999999999999999999 489999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHH
Q 040099 820 VVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKK 899 (1236)
Q Consensus 820 v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~ 899 (1236)
++.++++++.+|.+++++++++++.++...++.+..+...+......+...+++.|+++|+++||+|+.++++.+++.+.
T Consensus 1094 i~~li~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~ 1173 (1522)
T TIGR00957 1094 IGALIVILLATPIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLK 1173 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHH
Confidence 99888888888877666666555555555555555555455555566778899999999999999999999999999999
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 900 CEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVD-HKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAK 978 (1236)
Q Consensus 900 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1236)
.+...+..+.......+......++ ...++++++...+. .+.++.|.+.+++.+...+..++..+...+.+++.+.
T Consensus 1174 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~ 1250 (1522)
T TIGR00957 1174 VDENQKAYYPSIVANRWLAVRLECV---GNCIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNI 1250 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9888877665444443333322222 22233444444443 5789999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcccccCCCccccCcc--CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHH
Q 040099 979 SSAASVFGLIDQVSKIDSSEYTGRTL--ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056 (1236)
Q Consensus 979 ~a~~ri~~~~~~~~~~~~~~~~~~~~--~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~ 1056 (1236)
.+++|+.++++.+++.+.......++ .+..|.|+|+||+|+|+++. ++||+|+||+|+|||++|||||||||||||+
T Consensus 1251 ~s~eRi~~~~~~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~~-~~vL~~is~~I~~GekiaIVGrTGsGKSTL~ 1329 (1522)
T TIGR00957 1251 VAVERLKEYSETEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYREDL-DLVLRHINVTIHGGEKVGIVGRTGAGKSSLT 1329 (1522)
T ss_pred HHHHHHHHHhcCCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCCC-cccccceeEEEcCCCEEEEECCCCCCHHHHH
Confidence 99999999997765533111111111 13568999999999998653 4699999999999999999999999999999
Q ss_pred HHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhh
Q 040099 1057 SLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQE 1122 (1236)
Q Consensus 1057 ~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~ 1122 (1236)
++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+ +.++++++|.++|+
T Consensus 1330 ~lL~rl~~~~~G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~~~sdeei~~al~~a~l~~~I~~lp~ 1409 (1522)
T TIGR00957 1330 LGLFRINESAEGEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFSQYSDEEVWWALELAHLKTFVSALPD 1409 (1522)
T ss_pred HHHhcCccCCCCeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCcccCCCHHHHHHHHHHcCcHHHHhhCcc
Confidence 9999999999999999999999999999999999999999999999999995 67899999999999
Q ss_pred chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEE
Q 040099 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1123 Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
||||.|||+|.+|||||||||||||||+|+|+|||||||||+||++||+.|+++|++.+++||+|+||||++|+.+||||
T Consensus 1410 GLdt~v~e~G~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrI 1489 (1522)
T TIGR00957 1410 KLDHECAEGGENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRV 1489 (1522)
T ss_pred CCCceecCCCCcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1203 AVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1203 ~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|||+|+|+|+|+|+||+++ +|.|++|+++.+
T Consensus 1490 lVld~G~IvE~G~~~eLl~~-~~~f~~l~~~~g 1521 (1522)
T TIGR00957 1490 IVLDKGEVAEFGAPSNLLQQ-RGIFYSMAKDAG 1521 (1522)
T ss_pred EEEECCEEEEECCHHHHHhC-CCHHHHHHHHcC
Confidence 99999999999999999997 899999998653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-145 Score=1458.04 Aligned_cols=1141 Identities=17% Similarity=0.209 Sum_probs=868.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 63 LVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSF 142 (1236)
Q Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~ 142 (1236)
++.+++.++..++....|++++.+++.+... +. . ......+++.++++.++..++.....+...+.+.++...++..
T Consensus 247 ~~~~~~~l~~~~~~l~~P~ll~~~v~~l~~~-~~-~-~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~r~~~~~r~~L~~~ 323 (1560)
T PTZ00243 247 WWQIPFKLLSDVCTLTLPVLLKYFVKFLDAD-NA-T-WGRGLGLVLTLFLTQLIQSVCLHRFYYISIRCGLQYRSALNAL 323 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-Cc-c-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666677777778899999865322 11 1 0101112222333344455555556677778888999999999
Q ss_pred HHHHHHhCChhhHh--ccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040099 143 YLETILRQDIAFFD--KEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVI 220 (1236)
Q Consensus 143 ~~~~l~~~~~~~f~--~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~ 220 (1236)
+|+|+++++...+. +. ++|++++.+++|++.+.+++.. +..++..++.+++++++++.+....+++.++++++++.
T Consensus 324 if~K~l~ls~~~~~~~~~-~~G~i~nl~s~Dv~~i~~~~~~-~~~l~~~Pl~li~~~~lL~~~lG~~al~gv~vl~v~~p 401 (1560)
T PTZ00243 324 IFEKCFTISSKSLAQPDM-NTGRIINMMSTDVERINSFMQY-CMYLWSSPMVLLLSILLLSRLVGWCALMAVAVLLVTLP 401 (1560)
T ss_pred HHHHHHhCChhhhCCCCC-CHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH
Confidence 99999999998775 44 7899999999999999999844 56777888888888888877777788888888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040099 221 AGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIF 300 (1236)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1236)
+..++.++..+..++..+..++..+.+.|.++|||+||.+++|+.+.+++++.++++.+...+.....++...+......
T Consensus 402 l~~~~~k~~~~~~~~~~~~~D~Ri~~~~E~l~gIr~IK~~~wE~~f~~ri~~~R~~El~~l~~~~~~~~~~~~~~~~~p~ 481 (1560)
T PTZ00243 402 LNGAIMKHQMAARRKIAKAADARVKATNEFFSGIRIAKFMAWEPCFVANIEDKRARELRYLRDVQLARVATSFVNNATPT 481 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999999999999999999999999999998888877776666655444433333
Q ss_pred HHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCcc----cc-c---
Q 040099 301 SAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEID----LC-C--- 372 (1236)
Q Consensus 301 ~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~----~~-~--- 372 (1236)
+.. ++.++++.+..|.+|++.+++++.++..+..|+..+...+..+.++.+|++||.++|+.++... +. +
T Consensus 482 l~~--~~~f~~y~~~g~~Lt~~~vft~laL~~~L~~Pl~~lp~~~~~~~~a~vS~~RI~~fL~~~e~~~~~~~~~~~~~~ 559 (1560)
T PTZ00243 482 LMI--AVVFTVYYLLGHELTPEVVFPTIALLGVLRMPFFMIPWVFTTVLQFLVSIKRISTFLECDNATCSTVQDMEEYWR 559 (1560)
T ss_pred HHH--HHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccccccccccchhhcc
Confidence 322 2346778888999999999999999999999999999999999999999999999997653100 00 0
Q ss_pred ------c--C--------------CCC---------------------------CCCCCCcEEEEeEEEECCCC------
Q 040099 373 ------V--N--------------GKK---------------------------LDDIRGDIELKDVNFSYPAR------ 397 (1236)
Q Consensus 373 ------~--~--------------~~~---------------------------~~~~~~~i~~~~v~f~y~~~------ 397 (1236)
. . +.. .....+.+.++|++|+++..
T Consensus 560 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1560)
T PTZ00243 560 EQREHSTACQLAAVLENVDVTAFVPVKLPRAPKVKTSLLSRALRMLCCEQCRPTKRHPSPSVVVEDTDYGSPSSASRHIV 639 (1560)
T ss_pred cccccccccccccccccccccccccccccccccccccccccchhhccccccccccccccccccccccccccccccccccc
Confidence 0 0 000 00011347788887765310
Q ss_pred -------------------------------CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 398 -------------------------------PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 398 -------------------------------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
+++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~ 719 (1560)
T PTZ00243 640 EGGTGGGHEATPTSERSAKTPKMKTDDFFELEPKVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWA 719 (1560)
T ss_pred cccccccccccccccccccccccccccccccCCceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEE
Confidence 1245899999999999999999999999999999999999999999986
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 447 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
+ ++||||+|+|++|++||+|||.++.+. +.+++.++++.++++++++.+|+|++|.+|++|.+|||
T Consensus 720 ~-------------~~i~yv~Q~~~l~~~Tv~enI~~~~~~-~~~~~~~~~~~~~l~~~l~~l~~g~~t~i~~~g~~LSG 785 (1560)
T PTZ00243 720 E-------------RSIAYVPQQAWIMNATVRGNILFFDEE-DAARLADAVRVSQLEADLAQLGGGLETEIGEKGVNLSG 785 (1560)
T ss_pred C-------------CeEEEEeCCCccCCCcHHHHHHcCChh-hHHHHHHHHHHhhhHHHHHHhhccchHHhcCCCCCCCH
Confidence 4 479999999999999999999998753 56678888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
||||||+||||++++|+|||||||||+||+++++.+.+. +....+++|+|+|||+++.+..||+|++|++|+++++|++
T Consensus 786 GQkqRvaLARAl~~~p~illLDEP~saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~~~ad~ii~l~~G~i~~~G~~ 865 (1560)
T PTZ00243 786 GQKARVSLARAVYANRDVYLLDDPLSALDAHVGERVVEECFLGALAGKTRVLATHQVHVVPRADYVVALGDGRVEFSGSS 865 (1560)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEecCH
Confidence 999999999999999999999999999999998887664 4445568999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhhhhhhcccccccC-C-CCCCCCCC---C-CCCCCCCCC-CCcC---C-C----CccccccCCC
Q 040099 606 SELLENPYGAYNRLIRLQETCKESEKSAVN-N-SDSDNQPF---A-SPKITTPKQ-SETE---S-D----FPASEKAKMP 670 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~---~-~~~~~~~~~-~~~~---~-~----~~~~~~~~~~ 670 (1236)
+++++. +.|.++........+....... + ...+..+. . ......... .+.. . + ....++++..
T Consensus 866 ~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~e~~~~ 943 (1560)
T PTZ00243 866 ADFMRT--SLYATLAAELKENKDSKEGDADAEVAEVDAAPGGAVDHEPPVAKQEGNAEGGDGAALDAAAGRLMTREEKAS 943 (1560)
T ss_pred HHHHhC--hHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccccccccccchhhhHHHHhc
Confidence 999874 4577665432211110000000 0 00000000 0 000000000 0000 0 0 0001111122
Q ss_pred CcchhHHHhhhcCCch-HHHHHHHHHH-HHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 671 PDVSLSRLAYLNSPEV-PALLLGAIAS-MTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPL 748 (1236)
Q Consensus 671 ~~~~~~~~~~~~~~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 748 (1236)
+.++++.+..|.+... ..+.+..++. ++..++.....+++..+.... .......|+.+|+++.++..+..++
T Consensus 944 g~v~~~~y~~Y~~~~g~~~~~~~~l~~~~~~~~~~~~~~~wl~~w~~~~------~~~~~~~~l~~y~~~~~~~~~~~~l 1017 (1560)
T PTZ00243 944 GSVPWSTYVAYLRFCGGLHAAGFVLATFAVTELVTVSSGVWLSMWSTRS------FKLSAATYLYVYLGIVLLGTFSVPL 1017 (1560)
T ss_pred CcccHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc------cCCCcccHHHHHHHHHHHHHHHHHH
Confidence 3344444443332211 1111111111 111111112222222221110 1112345667777777776677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFK 828 (1236)
Q Consensus 749 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~ 828 (1236)
+.+.....+.+.++++|.++|++++++|++||| .+++|+++||+++|++.++..++..+..++..++.+++.++++++
T Consensus 1018 ~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd--~~~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~~~i~~li~~~~ 1095 (1560)
T PTZ00243 1018 RFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFD--TTPLGRILNRFSRDIDILDNTLPMSYLYLLQCLFSICSSILVTSA 1095 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCChhhcc--CCCccHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777777788888999999999999999999999 489999999999999999999999999999999999988888888
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHH
Q 040099 829 ACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGI 908 (1236)
Q Consensus 829 ~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~ 908 (1236)
.+|.+.++++.+..+.+.+..++.+..+...+......+...+++.|+++|+++||+|+.++++.++|.+..+...+..+
T Consensus 1096 ~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~~~~d~~~~~~~ 1175 (1560)
T PTZ00243 1096 SQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEALRRLDVVYSCSY 1175 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 88754433322222222223333333344444444556677899999999999999999999999999999998888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 909 RQGLMSGIGFGLSFFFFFMAYAVTFYVGAK--LVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFG 986 (1236)
Q Consensus 909 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~--lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~ 986 (1236)
.......+......++..+..+++.+++.. +...+.+++|.+..++.+......++..+...+.+++.++.+.+|+.+
T Consensus 1176 ~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le~~~~s~eRi~~ 1255 (1560)
T PTZ00243 1176 LENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVEADMNSVERLLY 1255 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 665555554444444444443333333333 333455788887777777788888999999999999999999999999
Q ss_pred HHhcccccCCCc-------------------------cccC----ccCCccccEEEeEEEEECCCCCCcccccceeEEec
Q 040099 987 LIDQVSKIDSSE-------------------------YTGR----TLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIP 1037 (1236)
Q Consensus 987 ~~~~~~~~~~~~-------------------------~~~~----~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~ 1037 (1236)
+++..++.+... .... +.++..|.|+|+||+|+|++. .++||+||||+|+
T Consensus 1256 ~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~~vL~~vsf~I~ 1334 (1560)
T PTZ00243 1256 YTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LPLVLRGVSFRIA 1334 (1560)
T ss_pred HHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CCceeecceEEEC
Confidence 997543321000 0000 011245889999999999754 3469999999999
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------- 1108 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------- 1108 (1236)
|||+||||||||||||||+++|+|+|+|++|+|+|||+||+++++++||++|++|||||+||+|||||||+
T Consensus 1335 ~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreNIdp~~~~sdee 1414 (1560)
T PTZ00243 1335 PREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQNVDPFLEASSAE 1414 (1560)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHHhCcccCCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred -----HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHcC
Q 040099 1109 -----EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE-PKILLLDEATSALDIESERVVQDALDQVMV 1182 (1236)
Q Consensus 1109 -----~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~-p~ILlLDEaTSaLD~~te~~I~~~L~~~~~ 1182 (1236)
+.++++++|.++|+||||.|||+|.+|||||||||||||||+++ |+|||||||||+||++||+.|+++|++.++
T Consensus 1415 I~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~ 1494 (1560)
T PTZ00243 1415 VWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFS 1494 (1560)
T ss_pred HHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCC
Confidence 67899999999999999999999999999999999999999996 899999999999999999999999999999
Q ss_pred CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1183 DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1183 ~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+||+|+||||++|+++||+|+||++|+|+|+|+|+||+++++|.|++|++.++
T Consensus 1495 ~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1495 AYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred CCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999999999999999999999999999999999876899999997653
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-141 Score=1424.08 Aligned_cols=1129 Identities=17% Similarity=0.213 Sum_probs=842.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 69 ATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETIL 148 (1236)
Q Consensus 69 ~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~ 148 (1236)
.++..++....|++++.+++.+........ .....++..++++.++..++.....+.....+.++...+...+|+|++
T Consensus 89 ~~~~~~~~~~~P~ll~~li~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~L~~~iy~K~L 166 (1490)
T TIGR01271 89 LYFGEATKAVQPLLLGRIIASYDPFNAPER--EIAYYLALGLCLLFIVRTLLLHPAIFGLHHLGMQMRIALFSLIYKKTL 166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCCCch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445555667789999987632211100 111112223333334444555555666667788888888888899999
Q ss_pred hCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 149 RQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKL 228 (1236)
Q Consensus 149 ~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~ 228 (1236)
+++...+++. ++|++++++++|++++.+++... ..++..++.++++++++++.....+++.++++++++.+..+++++
T Consensus 167 ~l~~~~~~~~-~~g~i~nl~s~Dv~~i~~~~~~~-~~~~~~pi~i~~~~~lL~~~~G~~~l~~l~v~~~~~~~~~~~~~~ 244 (1490)
T TIGR01271 167 KLSSRVLDKI-STGQLVSLLSNNLNKFDEGLALA-HFVWIAPLQVILLMGLIWELLEVNGFCGLGFLILLALFQACLGQK 244 (1490)
T ss_pred hCCHHHhcCC-CHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988 99999999999999999987654 445566676777777777766777888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Q 040099 229 VGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVW 308 (1236)
Q Consensus 229 ~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 308 (1236)
+.+..++.++..+++.+.+.|.++||++||+|++|+.+.+++++.+++..+...+......+...+..+. ...+.++.
T Consensus 245 ~~~~~~~~~~~~d~R~~~~~E~l~~ik~IK~~~~E~~~~~~i~~~R~~El~~~~~~~~~~~~~~~~~~~~--~~~~~~~~ 322 (1490)
T TIGR01271 245 MMPYRDKRAGKISERLAITSEIIENIQSVKAYCWEEAMEKIIKNIRQDELKLTRKIAYLRYFYSSAFFFS--GFFVVFLS 322 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHH
Confidence 9999999999999999999999999999999999999999999999988888877776654433332222 23344566
Q ss_pred HHHHHHHhcCcChhHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEE
Q 040099 309 YGAKLILEKGYSGGDVMSVIFGVLIGSMSLG-QASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIEL 387 (1236)
Q Consensus 309 ~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~ 387 (1236)
++++.+..+ ++++.+++++.++..+..|+. .++..+..+.++.+|++||.++++.++..+.. .. .....+++
T Consensus 323 f~~y~~~~~-~~~~~~ft~lal~~lL~~~l~~~lp~~~~~~~~a~~s~~RI~~fL~~~e~~~~~----~~--~~~~~i~~ 395 (1490)
T TIGR01271 323 VVPYALIKG-IILRRIFTTISYCIVLRMTVTRQFPGAIQTWYDSLGAITKIQDFLCKEEYKTLE----YN--LTTTEVEM 395 (1490)
T ss_pred HHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccc----cc--CCCCceEE
Confidence 677776654 688999998887777777774 68888999999999999999999865432111 00 11235999
Q ss_pred EeEEEECCCCC-------------------------------CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 388 KDVNFSYPARP-------------------------------DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 388 ~~v~f~y~~~~-------------------------------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+|++|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+
T Consensus 396 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~ 475 (1490)
T TIGR01271 396 VNVTASWDEGIGELFEKIKQNNKARKQPNGDDGLFFSNFSLYVTPVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGE 475 (1490)
T ss_pred ecceEecCCccccccccccccccccccccccccccccccccccCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCC
Confidence 99999995310 13689999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 437 YDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 437 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
++|++|+|.++| +|+||+|+||+|++||+|||.||.+ .+++++.++++.|++.+++..+|+|++|.
T Consensus 476 ~~~~~G~i~~~g-------------~iayv~Q~~~l~~~Ti~eNI~~g~~-~~~~~~~~~~~~~~L~~~l~~l~~g~~t~ 541 (1490)
T TIGR01271 476 LEPSEGKIKHSG-------------RISFSPQTSWIMPGTIKDNIIFGLS-YDEYRYTSVIKACQLEEDIALFPEKDKTV 541 (1490)
T ss_pred CCCCCceEEECC-------------EEEEEeCCCccCCccHHHHHHhccc-cchHHHHHHHHHHhHHHHHHhcccccccc
Confidence 999999999998 5999999999999999999999975 45667888889999999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHccCceEEEEecCchhHhhcCeEEEEE
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
+|++|.+|||||||||+||||++++|+|+|||||||+||+++++.+.+. +.++.+++|+|+|||+++.+..||+|++|+
T Consensus 542 vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~saLD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~~ad~ii~l~ 621 (1490)
T TIGR01271 542 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLKKADKILLLH 621 (1490)
T ss_pred ccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHHhCCEEEEEE
Confidence 9999999999999999999999999999999999999999999999974 677778999999999999999999999999
Q ss_pred CCEEEEEeCcccccccccchhhhhHHhhhh------hh--------------c--------ccc--cc--cCCCCC-C--
Q 040099 596 QGKIVEKGTHSELLENPYGAYNRLIRLQET------CK--------------E--------SEK--SA--VNNSDS-D-- 640 (1236)
Q Consensus 596 ~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~------~~--------------~--------~~~--~~--~~~~~~-~-- 640 (1236)
+|+|++.|+++++... ++.|.+.+..... .. . .+. .. .+.... .
T Consensus 622 ~g~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 700 (1490)
T TIGR01271 622 EGVCYFYGTFSELQAK-RPDFSSLLLGLEAFDNFSAERRNSILTETLRRVSIDGDSTVFSGPETIKQSFKQPPPEFAEKR 700 (1490)
T ss_pred CCEEEEEcCHHHHHhc-ChHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999875 5556555421000 00 0 000 00 000000 0
Q ss_pred ----------------------------CCC--C-----------CC--------CCCCC--------------------
Q 040099 641 ----------------------------NQP--F-----------AS--------PKITT-------------------- 651 (1236)
Q Consensus 641 ----------------------------~~~--~-----------~~--------~~~~~-------------------- 651 (1236)
... . +. +....
T Consensus 701 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 780 (1490)
T TIGR01271 701 KQSIILNPIASARKFSFVQMGPQKAQATTIEDAVREPSERKFSLVPEDEQGEESLPRGNQYHHGLQHQAQRRQSVLQLMT 780 (1490)
T ss_pred cccccccccccccccccccccccccccccccchhcccccccccccccccccccccccccccccccccccccccchhhccc
Confidence 000 0 00 00000
Q ss_pred CC--CC-----------------C-----cC---------CC-----Cc-----------cccccCCCCcchhHHHhhhc
Q 040099 652 PK--QS-----------------E-----TE---------SD-----FP-----------ASEKAKMPPDVSLSRLAYLN 682 (1236)
Q Consensus 652 ~~--~~-----------------~-----~~---------~~-----~~-----------~~~~~~~~~~~~~~~~~~~~ 682 (1236)
+. .+ + .. .+ .. ..++++..+.+.+..+++|.
T Consensus 781 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~g~v~~~vY~~Y~ 860 (1490)
T TIGR01271 781 HSNRGENRREQLQTSFRKKSSITQQNELASELDIYSRRLSKDSVYEISEEINEEDLKECFADERENVFETTTWNTYLRYI 860 (1490)
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhhhhhhHHHHhhcCcccHHHHHHHH
Confidence 00 00 0 00 00 00 00000111233444444433
Q ss_pred CC-ch-HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh--c--CchhHH-----------hhhHHHH-HHHHHHHHHHHHH
Q 040099 683 SP-EV-PALLLGAIASMTNGIIIPIFGVMLAAMVNTL--N--EPKEEL-----------MRHSKHW-ALMFVALGAASLL 744 (1236)
Q Consensus 683 ~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~-----------~~~~~~~-~~~~~~l~~~~~~ 744 (1236)
+. ++ ..+++.+++.++..++.....+++..+.... + ...... ......| ..+|++++++..+
T Consensus 861 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 940 (1490)
T TIGR01271 861 TTNRNLVFVLIFCLVIFLAEVAASLLGLWLITDNPSAPNYVDQQHANASSPDVQKPVIITPTSAYYIFYIYVGTADSVLA 940 (1490)
T ss_pred HhcCcHHHHHHHHHHHHHHHHHHHHhhHHHHhcccccccccccccccCCCccccccccccCcchhhHHHHHHHHHHHHHH
Confidence 32 11 2222212222222222222333332221100 0 000000 0011122 3344444445566
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 745 TSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLV 824 (1236)
Q Consensus 745 ~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~i 824 (1236)
+.+++.+++...+.+.+.++|.+++++++++|++|||+ +++|+++|||++|++.++..++..+..++..++.+++.++
T Consensus 941 ~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~--~~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~~~i~~l~ 1018 (1490)
T TIGR01271 941 LGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNT--MKAGRILNRFTKDMAIIDDMLPLTLFDFIQLTLIVLGAIF 1018 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77788888999999999999999999999999999994 8999999999999999999999999999999999999988
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHH
Q 040099 825 IAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPI 904 (1236)
Q Consensus 825 i~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~ 904 (1236)
++++.+|.+++++++++++++....++.+..+...+......+...+++.|+++|+.|||+|+.++++.+++.+..+...
T Consensus 1019 ~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~~~~~~~~ 1098 (1490)
T TIGR01271 1019 VVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFHKALNLHT 1098 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence 88888887655443333333333334444434444444455667789999999999999999999999999999988765
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 905 KAGIRQGLMSGIGFGLSFFFFFMAY--AVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAA 982 (1236)
Q Consensus 905 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ 982 (1236)
+..........+......++..+.. ++.++++.. ..+.|.+..++.+......++..+...+.+++..+.+.+
T Consensus 1099 ~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~~-----~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le~~~~s~e 1173 (1490)
T TIGR01271 1099 ANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGTN-----QDGEGEVGIILTLAMNILSTLQWAVNSSIDVDGLMRSVS 1173 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----cCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5544333322222222222111111 111222222 233444444444555566677777788889999999999
Q ss_pred HHHHHHhcccccCCCccc-------------c-C-c-cCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEc
Q 040099 983 SVFGLIDQVSKIDSSEYT-------------G-R-T-LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVG 1046 (1236)
Q Consensus 983 ri~~~~~~~~~~~~~~~~-------------~-~-~-~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG 1046 (1236)
|+.++.+.+++.+..... . . + ..+..|.|+|+||+|+|++. .+++|+|+||+|+|||+|||||
T Consensus 1174 Ri~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~GekvaIvG 1252 (1490)
T TIGR01271 1174 RVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGGQRVGLLG 1252 (1490)
T ss_pred HHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCCCEEEEEC
Confidence 999999766553211100 0 0 0 11346899999999999853 3579999999999999999999
Q ss_pred CCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhh
Q 040099 1047 ESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMAN 1112 (1236)
Q Consensus 1047 ~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~ 1112 (1236)
|||||||||+++|+|+|+ ++|+|+|||+||++++++.+|++|++|||||+||+|||||||+ +.++
T Consensus 1253 rSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~~~tdeei~~aL~~~~ 1331 (1490)
T TIGR01271 1253 RTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYEQWSDEEIWKVAEEVG 1331 (1490)
T ss_pred CCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCcccCCCHHHHHHHHHHCC
Confidence 999999999999999998 7999999999999999999999999999999999999999995 6788
Q ss_pred hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 040099 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192 (1236)
Q Consensus 1113 ~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR 1192 (1236)
+++++.++|+||||.|||+|.+|||||||||||||||||+|+|||||||||+||++||+.|++.|++.+++||+|+||||
T Consensus 1332 L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHR 1411 (1490)
T TIGR01271 1332 LKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHR 1411 (1490)
T ss_pred CHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1193 l~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
++++.+||||+||++|+|+|.|+|++|+++ +|.|++|++.++
T Consensus 1412 l~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~ 1453 (1490)
T TIGR01271 1412 VEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAAD 1453 (1490)
T ss_pred HHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhC
Confidence 999999999999999999999999999985 899999998653
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-114 Score=1009.94 Aligned_cols=574 Identities=39% Similarity=0.609 Sum_probs=543.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..++|++.|++|+++ .+..+.++.++.+....+.|++.|+++|.+....+. ...+...+..+.++.++.+++.+++
T Consensus 133 ~~~~rl~~l~~~~~~-~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~~~~---~~~~~~~~~~l~~l~~~~a~~~~~r 208 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWK-WLVAAFVLLLVSSLINMFIPYYLGKLIDTISEGDDS---ADALKRACTILLGLFLIGALANAIR 208 (716)
T ss_pred hHHHHHHHHhchhHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhccch---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 368899999999865 457777777888888889999999999987651111 2334456677778888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.+++..+++++..++|.++|+++++++++|||.+ ++|||+||+++|+..+.+.++..+...+.++++.++++++||++|
T Consensus 209 ~~~~~~a~~rv~~rlR~~lF~sil~QdiaFFD~n-ktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S 287 (716)
T KOG0058|consen 209 GGLLQYAGERVVARLRTDLFRSLLRQDIAFFDEN-KTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLS 287 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhccC-CccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhh
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|+|++++++.+|+++++..+++++.++.+++.|++.++.+...+|.+++|||||+|+.|+.|.+||.+..++..+...|.
T Consensus 288 ~~Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~ 367 (716)
T KOG0058|consen 288 WRLTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKE 367 (716)
T ss_pred HHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
....+.+.....+..++..+.+++||++++.+|.||.|++++|++|......++..++..++.++++..|.+|+||++|+
T Consensus 368 a~a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr 447 (716)
T KOG0058|consen 368 AVAYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDR 447 (716)
T ss_pred HHHhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+|.++... ...+...+|.|+|+||+|+||.+++.+||+|+||+|+|||+||+|||||+||||+++||.|||+|++|+|
T Consensus 448 ~P~i~~~G--~~~p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~I 525 (716)
T KOG0058|consen 448 KPRIPLTG--TLAPDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRI 525 (716)
T ss_pred CCCCCCCC--ccccccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeE
Confidence 99876542 1222257899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
.+||+||+++++.+||++||+|.|||.||++||+|||+||.+++++|++..|+++|++|+||.++|+||||.|||+|.+|
T Consensus 526 llDG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qL 605 (716)
T KOG0058|consen 526 LLDGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQL 605 (716)
T ss_pred EECCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
||||||||||||||++||.||||||||||||+++|..|+++|.+..+++|||+|+|||+|+++||+|+|+++|+++|.|+
T Consensus 606 SGGQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~ 685 (716)
T KOG0058|consen 606 SGGQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGT 685 (716)
T ss_pred cchHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHhhhh
Q 040099 605 HSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
|+||+++++|.|+++.+.|..
T Consensus 686 h~eLl~~~~gly~~Lv~~q~~ 706 (716)
T KOG0058|consen 686 HDELLSKPNGLYAKLVQRQLD 706 (716)
T ss_pred HHHHhhCcccHHHHHHHHhcc
Confidence 999999977999999988754
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-108 Score=965.26 Aligned_cols=558 Identities=38% Similarity=0.596 Sum_probs=528.5
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.+++|+++..+..+.++......+.|.+.+.+++.++.. .+...........+.++.++..++.+++.++
T Consensus 133 ~~~~rl~~l~~~~~~~l~~a~~~l~vss~~~~~iP~~~G~~id~~~~~-~~~~~~~~~~~~~l~~l~~~~a~~~~~r~~~ 211 (716)
T KOG0058|consen 133 TLLKRLLGLLKPEWKWLVAAFVLLLVSSLINMFIPYYLGKLIDTISEG-DDSADALKRACTILLGLFLIGALANAIRGGL 211 (716)
T ss_pred hHHHHHHHHhchhHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHHhc-cchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 367899999999999999999998888888888889999999887661 2223334445666677788888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
+.++++++..++|..+|+++++++++|||. |.+|++++|++.|+..+.+.++..+...+.+++..++++.++++.+|.
T Consensus 212 ~~~a~~rv~~rlR~~lF~sil~QdiaFFD~--nktGeL~SRLtsD~~~vs~svs~nls~~lR~~~~~~g~~~~M~~~S~~ 289 (716)
T KOG0058|consen 212 LQYAGERVVARLRTDLFRSLLRQDIAFFDE--NKTGELISRLTSDTQIVSNSVSQNLSDGLRNLVQGFGGLGFMFSLSWR 289 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhcc--CCccHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHH
Confidence 999999999999999999999999999994 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
++++.++.+|++.+...++.+++++.+++.+++.+++++...|.+++++|||+|+.|+++.++|.+..++..+...|...
T Consensus 290 Ltlv~~i~~P~v~~~~~~yG~~~rklS~~~Q~a~A~a~~vaeE~ls~~rTVRsfa~E~~E~~ry~~~l~~~~~i~~k~a~ 369 (716)
T KOG0058|consen 290 LTLVTLIVVPIVALVAKIYGKYLRKLSKQTQDALARANQVAEEVLSAMRTVRSFAAEEQEVKRYNKKLREVLKLSKKEAV 369 (716)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
..+.+++...+...+....++++|++++..|.++.|++..++++......++..++.++.++.++..|.+|+++++|++|
T Consensus 370 a~~~f~~~~~~~~~~~~~siL~~Gg~Lv~~g~mt~g~L~sFllY~~~~g~sl~~ls~~ys~lmkgvGAs~rvFel~dr~P 449 (716)
T KOG0058|consen 370 AYGIFFGSTNLLGNLAVLSILFYGGHLVLTGSLTSGALSSFLLYQVQLGSSLSGLSSFYSELMKGVGASERVFELMDRKP 449 (716)
T ss_pred HhhHhHhHHHHHHhHHHHHHHHhccchhhcCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHhccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
..+.. .... |....|.|+|+||+|+||.||+.+||+|+||+|+|||+||+||||||||||+++||+|||+|++|+|++
T Consensus 450 ~i~~~-G~~~-p~~~~G~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~Ill 527 (716)
T KOG0058|consen 450 RIPLT-GTLA-PDHLQGVIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILL 527 (716)
T ss_pred CCCCC-Cccc-cccccceEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEE
Confidence 88765 2112 225789999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+||+++++++||++||+|.|||.||++||+|||. ++||+|+||..+|+||||.|||+|.+|||
T Consensus 528 DG~~i~~~~~~~lr~~Ig~V~QEPvLFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~VGEkG~qLSG 607 (716)
T KOG0058|consen 528 DGVPISDINHKYLRRKIGLVGQEPVLFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTVVGEKGSQLSG 607 (716)
T ss_pred CCeehhhcCHHHHHHHeeeeeccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCccccccc
Confidence 999999999999999999999999999999999994 88999999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
||||||||||||+|||+||||||||||||+++|..||++|++..+++|||+|||||+||++||+|+|+++|+|+|.|+|+
T Consensus 608 GQKQRIAIARALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~~Ad~Ivvi~~G~V~E~G~h~ 687 (716)
T KOG0058|consen 608 GQKQRIAIARALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVRHADQIVVIDKGRVVEMGTHD 687 (716)
T ss_pred hHHHHHHHHHHHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhhhccEEEEEcCCeEEecccHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhccC
Q 040099 1218 SLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q~ 1235 (1236)
||+++++|.|++|+++|.
T Consensus 688 eLl~~~~gly~~Lv~~q~ 705 (716)
T KOG0058|consen 688 ELLSKPNGLYAKLVQRQL 705 (716)
T ss_pred HHhhCcccHHHHHHHHhc
Confidence 999998899999998873
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-105 Score=982.62 Aligned_cols=579 Identities=43% Similarity=0.727 Sum_probs=546.2
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040099 43 GRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASF 122 (1236)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1236)
.+.++++++++.+|. |.+++++++++++.|...|++.++++.++..+... +.+........+++++++++++.+++.+
T Consensus 648 ~~~s~~~i~k~~~pe-~~~l~lG~i~a~i~G~~~P~fa~~~s~~~~~f~~~-~~~~~~~~~~~~al~f~~l~~~~~i~~~ 725 (1228)
T KOG0055|consen 648 EKVSFWRIFKLNKPE-WPYLLLGSLGAAIRGATYPLFAYVFSQVLEAFYPP-DDDELKREVRAWALIFLGLGIVSGITNF 725 (1228)
T ss_pred ccccHHHHHHhccch-hHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 567899999999996 56789999999999999999999999999987643 2222222223378888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 123 FQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFF 202 (1236)
Q Consensus 123 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1236)
++.+++...|+++..|+|...|+++++++++|||+..++|.|.+|+.+|...++..+.+-+..++.++..+++++++.|+
T Consensus 726 ~q~~~f~~~ge~Lt~R~R~~~F~~ll~qd~~wFD~~~nsg~l~~RLa~Da~~vr~~v~~rl~~vv~~~~~~~~~iiiaf~ 805 (1228)
T KOG0055|consen 726 LQHYFFGIAGEKLTKRLRSMMFRALLRQEVGWFDDPENSGALSSRLATDASNVRAAVGDRLSLVVQNIAAVIIGIIIAFI 805 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCCccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999997656699999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 040099 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282 (1236)
Q Consensus 203 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 282 (1236)
++|+|+++++++.|++++..+...+.+.....+..+..++.+..+.|++.+||||++|+.|+++.+.|.+..++..+...
T Consensus 806 ~~W~lalv~la~~Pll~~~~~~~~~~~~~~~~~~~~~~~ea~~iA~eai~NIrTV~al~~e~~~~~~y~~~l~~p~~~~~ 885 (1228)
T KOG0055|consen 806 YGWRLALVVLATFPLLILSGYLQKKFLKGFSKDDKKAYEEASKIAIEAVSNIRTVAALCAEEKFMELYKEELEKPRKSSF 885 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAI 362 (1236)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 362 (1236)
|...+.++..++.+.+.++.+++.+|||++++.+|.+++.+++-.+..+.+....+++.....+.+.+|+.|+.++|+++
T Consensus 886 ~~~~i~gl~f~~sqs~~~~~~A~~f~~G~~Li~~g~~~~~~~~~vf~~l~~ta~~~~~~~s~~Pd~~ka~~Aa~~iF~i~ 965 (1228)
T KOG0055|consen 886 KRGLISGLGFGFSQSLLFFVYALSFWYGARLISNGEMTFEDVFRVFMALSFTAMALGQASSYAPDISKAKIAAGSIFEIL 965 (1228)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCcCHHHHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999988888888889999999999999999999999999
Q ss_pred ccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 363 NRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
|++|+++..+..+...+..+|+|+|+||+|+||.+|+.+||+|+||+|++|+++||||||||||||++.||.|||+|++|
T Consensus 966 dr~~~i~~~~~~~~~~~~~~G~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G 1045 (1228)
T KOG0055|consen 966 DRKPTIDPDSTSGGKLPNVKGDIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAG 1045 (1228)
T ss_pred cCCCCCCCCCCCCCccccceeEEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCC
Confidence 99997765432333456678999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCC
Q 040099 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522 (1236)
Q Consensus 443 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~ 522 (1236)
.|.|||+|++++++++||++||.|.|||.||++||||||+||.+.++++|+.+||+.|++|+||.+||+||||.+||+|.
T Consensus 1046 ~V~IDg~dik~lnl~~LR~~i~lVsQEP~LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~vGerG~ 1125 (1228)
T KOG0055|consen 1046 KVKIDGVDIKDLNLKWLRKQIGLVSQEPVLFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTRVGERGV 1125 (1228)
T ss_pred eEEECCcccccCCHHHHHHhcceeccCchhhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCccCcccC
Confidence 99999999999999999999999999999999999999999966689999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
+||||||||||||||++|||+||||||+|||||.++|+.++++|++.+.|||+|+|||||+|+++||.|+|++||+|+|+
T Consensus 1126 QLSGGQKQRIAIARAilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIqnaD~I~Vi~~G~VvE~ 1205 (1228)
T KOG0055|consen 1126 QLSGGQKQRIAIARAILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQNADVIAVLKNGKVVEQ 1205 (1228)
T ss_pred cCCchHHHHHHHHHHHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhhcCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccccccchhhhhHHhhh
Q 040099 603 GTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 603 g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+|++|+++ +|.|.+|++.|.
T Consensus 1206 GtH~~L~~~-~G~Y~~Lv~~q~ 1226 (1228)
T KOG0055|consen 1206 GTHDELLAK-RGIYFRLVQLQS 1226 (1228)
T ss_pred ccHHHHHhC-CCchHHHhhhcc
Confidence 999999996 899999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-97 Score=908.43 Aligned_cols=570 Identities=31% Similarity=0.455 Sum_probs=527.8
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
+..+.+++..+.+|++.+ .-.++.+++..++....|++++.++|.+....+. +.+....+.+++.++...++.++
T Consensus 139 ~~~~~~f~~~~~~~~~~l-~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~~~----~tL~vl~ig~~~~~l~~~~l~~l 213 (709)
T COG2274 139 PFGLSWFIPLLFKYRRLL-FEVLLASLLLQLLALATPLFSQIVIDKVLPDASR----STLTVLAIGLLLAALFEALLRLL 213 (709)
T ss_pred ccchHhHHHHHHhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 446777888787776543 3334444555555566667889999997654332 44555566667777888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+++.++..++-.++|+|++++|++||+++ ++||+++|+. |.++|+++++..+...+.+++++++.+++|+++
T Consensus 214 r~~~~~~~~~rld~~l~~~~~~hll~Lpl~~f~~r-~~Ge~~sR~~-el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~y 291 (709)
T COG2274 214 RTYLIAHLGKRLDLELSGRFFRHLLRLPLSYFEKR-SVGEIISRVR-ELEQIREFLTGSILTLIIDLLFALIFLAVMFLY 291 (709)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHcCcHHHccCC-ChhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 9999999996 999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.|++++++.+|+++++..++.+.+++..++..+..++.++.+.|+++|+++||+.+.|.++..+|++...+..+.+.+
T Consensus 292 s~~L~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~ 371 (709)
T COG2274 292 SWKLTLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFK 371 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+.......+..++..++.++++|+|+++|++|++|+|++++|.+....+..|+.++...+..+++++.+.+|+.++++
T Consensus 372 ~~~~~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~ 451 (709)
T COG2274 372 TEKLALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILD 451 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.|+|.+... .....+...|+|+|+||+|+|+.+ ++++|+|+||+|+|||++||||+||||||||+|+|+|+|+|++|+
T Consensus 452 ~~~E~~~~~-~~~~~~~~~g~I~~~nvsf~y~~~-~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~ 529 (709)
T COG2274 452 TPPEQEGDK-TLIHLPKLQGEIEFENVSFRYGPD-DPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGR 529 (709)
T ss_pred CCccccccc-ccccccccCceEEEEEEEEEeCCC-CcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCce
Confidence 988855432 123456678999999999999854 347999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|++||.|+.++++.++|++||||+||+.||+|||+|||++++|++++|++.+||+.+++|+||.++|.||+|.+||+|.+
T Consensus 530 I~~dg~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~ 609 (709)
T COG2274 530 ILLDGVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGAN 609 (709)
T ss_pred EEECCEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||||+|||||++||+||||||||||||+++|+.|.+.|.++..++|+|+||||++++++||||+||++|+|+++|
T Consensus 610 LSGGQrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~g 689 (709)
T COG2274 610 LSGGQRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQG 689 (709)
T ss_pred CCHHHHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+||++. +|.|+++|..|
T Consensus 690 s~~ell~~-~g~y~~l~~~q 708 (709)
T COG2274 690 SHEELLAQ-GGLYARLYQQQ 708 (709)
T ss_pred CHHHHHHh-cChHHHHHhcc
Confidence 99999998 89999999765
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-91 Score=872.38 Aligned_cols=568 Identities=21% Similarity=0.252 Sum_probs=498.9
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQN-ATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
..++++++|.+|+++ .++++++++++.+++.+..|+++++++|.+... .+. ..+..+...++++.++..++.++
T Consensus 8 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (588)
T PRK11174 8 ELTRWLKQQSKPAKR-WLNLSILLGFLSGLLLIAQAWLLATILQALIIENIPR----EALLPPFILLILLFVLRALLAWL 82 (588)
T ss_pred hhhHHHHHHhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 347789999999866 456777777888888888999999999976421 111 12223333445556667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+.+.++..++|.++|+|++++|+++|+++ ++|++++|+++|++.+++++...+..++..++.+++.+++++++
T Consensus 83 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 161 (588)
T PRK11174 83 RERVGFKAGQHIRQQIRQQVLDKLQQLGPAWIQGK-PAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPI 161 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhccC-CHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (588)
T PRK11174 162 NWAAGLILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTME 241 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDV---------MSVIFGVLIGSMSLGQASPCLSAFAAGQAA 354 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~---------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s 354 (1236)
..+..+...++..++..+..+++++++++.+. |.+|+|++ ++++.+......|+..++..+..++++.++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~ 320 (588)
T PRK11174 242 VLRMAFLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGA 320 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88877777777776666666666666666544 88888865 111233445578999999999999999999
Q ss_pred HHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 355 AFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 355 ~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++|+.++++.+++.+... ....+....++|+|+||+|.|++ ++++|+|+||+|+|||++|||||||||||||+++|+
T Consensus 321 ~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vsf~~~~--~~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~ 397 (588)
T PRK11174 321 AESLVTFLETPLAHPQQG-EKELASNDPVTIEAEDLEILSPD--GKTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALL 397 (588)
T ss_pred HHHHHHHHcCCCcccCCC-ccccCCCCCceEEEEeeEEeccC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHh
Confidence 999999998765432111 10111112357999999988763 357999999999999999999999999999999999
Q ss_pred cCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc
Q 040099 435 RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD 514 (1236)
Q Consensus 435 ~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~ 514 (1236)
|+| |++|+|++||+|+++++.+++|++|+||||||+||++||+|||++|+|++++++++++++.|++++|+.++|+|||
T Consensus 398 g~~-p~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~d 476 (588)
T PRK11174 398 GFL-PYQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLD 476 (588)
T ss_pred cCC-CCCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccc
Confidence 999 9999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 515 TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 515 t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
|.+||+|.+|||||||||+||||+++||+|||||||||+||+++|+.|+++|+++.+++|+|+||||++++++||+|++|
T Consensus 477 T~vge~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl 556 (588)
T PRK11174 477 TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVM 556 (588)
T ss_pred cccccCCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEE
Confidence 99999999999999999999999999999999999999999999999999999998899999999999999999999999
Q ss_pred ECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 595 QQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 595 ~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
++|+|+|+|+|+||+++ ++.|++++..|.
T Consensus 557 ~~G~i~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 557 QDGQIVQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eCCeEeecCCHHHHHhc-chHHHHHHHHhh
Confidence 99999999999999988 789999997764
|
|
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-90 Score=855.44 Aligned_cols=562 Identities=34% Similarity=0.540 Sum_probs=513.4
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
+++++.+.+ .+ .+.++.++.++..++....|++++.++|.+... . .....+..+++++.++..++.++..+
T Consensus 4 ~~~l~~~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~----~~~~~~~~~~~~~~~~~~v~~~~~~~ 74 (567)
T COG1132 4 LRRLLKYLK--YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLAD--L----GELLELLLLLLLLALLGGVLRALQSY 74 (567)
T ss_pred HHHHHHHHH--HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh--H----HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 556666665 34 556677777777788888888999999986511 1 22333344455555567788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
+..+.+.++..++|.++|++++++|+++|+++ ++|++++|+++|++.++..+.+....+...++++++.+++++..+|.
T Consensus 75 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 153 (567)
T COG1132 75 LGSRLGQKIVADLRRDLFEKLLRLPLSFFDKA-KSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWR 153 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCHHHhCcC-CcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 88999999999999999999999999999999 99999999999999999999998666666789999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 207 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
+++++++..|++.+...++.++.++..++.++..+++++.+.|.++|+++||+|+.++.+.++|.+..++..+...+...
T Consensus 154 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (567)
T COG1132 154 LALILLLILPLLALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASR 233 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999888999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040099 287 ATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKP 366 (1236)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 366 (1236)
..+...++..++..+..++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.+|++|++++++.+|
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 313 (567)
T COG1132 234 LEALLAPLMLLLSSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEP 313 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88888899999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 367 EIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
+..+... ......++|+|+||+|+|++ ++++|+|+||+++|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 314 ~~~~~~~---~~~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~i 388 (567)
T COG1132 314 EVEDPPD---PLKDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILI 388 (567)
T ss_pred cccCCCC---CCCCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEE
Confidence 6543221 12334577999999999974 457999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 447 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
||+|+++++.+++|++|+||||||+||++||+|||.+|+|++++||+++||+.++++||+.++|+||||.+||+|.+|||
T Consensus 389 dg~dI~~i~~~~lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSg 468 (567)
T COG1132 389 DGIDIRDISLDSLRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSG 468 (567)
T ss_pred CCEehhhcCHHHHHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcc
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~ 606 (1236)
|||||||||||+++||||||||||||+||++||+.|+++++++.++||+|+||||++++++||+|+||++|+|+|.|+|+
T Consensus 469 GQrQrlaiARall~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~ 548 (567)
T COG1132 469 GQRQRLAIARALLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHE 548 (567)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHH
Confidence 99999999999999999999999999999999999999999888899999999999999999999999999999999999
Q ss_pred cccccccchhhhhHHhhh
Q 040099 607 ELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 607 ~l~~~~~~~y~~~~~~~~ 624 (1236)
||+++ +|.|+++|..|.
T Consensus 549 eLl~~-~g~y~~l~~~~~ 565 (567)
T COG1132 549 ELLAK-GGLYARLYQAQG 565 (567)
T ss_pred HHHHc-CCHHHHHHHHhh
Confidence 99998 899999998764
|
|
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-90 Score=848.35 Aligned_cols=554 Identities=31% Similarity=0.460 Sum_probs=502.2
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
.+.+++....++++.+.-.++.+++..+.....+++...++|...... ...........++++++...++..++.+.+
T Consensus 141 ~~~~f~~~~~~~~~~l~~v~~~sl~l~i~~l~~p~~~q~viD~Vl~~~--~~~tL~vl~ig~~~~~l~~~~l~~lr~~~~ 218 (709)
T COG2274 141 GLSWFIPLLFKYRRLLFEVLLASLLLQLLALATPLFSQIVIDKVLPDA--SRSTLTVLAIGLLLAALFEALLRLLRTYLI 218 (709)
T ss_pred chHhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC--chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555655555555555555555555555666666543321 122233445566677788889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.|+..++-.++|+|++++|++||. .+++|++++|+ +|.+.++++++......+..+...++.++++++++|.+
T Consensus 219 ~~~~~rld~~l~~~~~~hll~Lpl~~f~--~r~~Ge~~sR~-~el~~Ir~flt~~~l~~iiD~~~~~i~l~vm~~ys~~L 295 (709)
T COG2274 219 AHLGKRLDLELSGRFFRHLLRLPLSYFE--KRSVGEIISRV-RELEQIREFLTGSILTLIIDLLFALIFLAVMFLYSWKL 295 (709)
T ss_pred HHHHHHHhHHHHHHHHHHHHcCcHHHcc--CCChhhHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 48899999999 79999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++.+|++++...+..+.+++..++.....++.++++.|++.|++|||+.+.|.++..+|++...+..+...+....
T Consensus 296 ~li~l~~~~l~~l~~~~~~~~l~~~~~~~~~~~a~~~s~lvE~i~gi~tvK~~~~e~~~~~~w~~~~~~~~~~~~~~~~~ 375 (709)
T COG2274 296 TLIVLAAIPLNVLITLIFQPLLRRKTRKLIEESAEQQSFLVETIKGIETVKALAAEPRFRSQWDNRLAKQVNIGFKTEKL 375 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhhHHHHHhhhhHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
......+..++..+..++++|+|+++|.+|++|+|.++++.+....+..|+..+..++.+++....+.+|+.++++.++|
T Consensus 376 ~~~~~~~~~~l~~l~~v~iL~~G~~lVl~~~lTlG~LiAf~~l~~~f~~pi~~L~~~~~~~q~~~~~~~rL~dil~~~~E 455 (709)
T COG2274 376 ALILNTIKSLLQQLSSVLILWFGAILVLEGELTLGQLVAFNMLAGYFISPITRLSQLWTDFQQAKVALERLGDILDTPPE 455 (709)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred cCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+.+.. ....+...|+|+|+||+|+|+.++ +++|+|+||+|+|||+|||||+||||||||+|+|.|+|+|++|+|++|
T Consensus 456 ~~~~~~-~~~~~~~~g~I~~~nvsf~y~~~~-~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~d 533 (709)
T COG2274 456 QEGDKT-LIHLPKLQGEIEFENVSFRYGPDD-PPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLD 533 (709)
T ss_pred cccccc-cccccccCceEEEEEEEEEeCCCC-cchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEEC
Confidence 554332 123456789999999999998663 479999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChh
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGG 1138 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGG 1138 (1236)
|+|++++++..||++|+|||||++||+|||||||+ +.|++|+||.++|.||||+|||+|.+||||
T Consensus 534 g~dl~~i~~~~lR~~ig~V~Q~~~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~v~E~G~~LSGG 613 (709)
T COG2274 534 GVDLNDIDLASLRRQVGYVLQDPFLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGG 613 (709)
T ss_pred CEeHHhcCHHHHHhheeEEcccchhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCCCCHH
Confidence 99999999999999999999999999999999995 789999999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhH
Q 040099 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1139 QrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
|||||+|||||++||+||||||||||||++||+.|.+.|.+..++||+|+||||++++++||||+|||+|+|+|+|+|+|
T Consensus 614 QrQrlalARaLl~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti~~adrIiVl~~Gkiv~~gs~~e 693 (709)
T COG2274 614 QRQRLALARALLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTIRSADRIIVLDQGKIVEQGSHEE 693 (709)
T ss_pred HHHHHHHHHHhccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHhhhccEEEEccCCceeccCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhccCcccHHhhhccC
Q 040099 1219 LISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1219 Ll~~~~g~y~~L~~~q~ 1235 (1236)
|++. +|.|+++++.|.
T Consensus 694 ll~~-~g~y~~l~~~q~ 709 (709)
T COG2274 694 LLAQ-GGLYARLYQQQE 709 (709)
T ss_pred HHHh-cChHHHHHhccC
Confidence 9997 999999998774
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-90 Score=915.91 Aligned_cols=570 Identities=29% Similarity=0.439 Sum_probs=498.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.+.+++++++++++. ++++++++++.+++.|++|++++.++|.+..... .......+++++++++++.+++.+++.
T Consensus 812 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~~~~~~~l~~~~~~i~~~~~~~l~~ 887 (1466)
T PTZ00265 812 NLRIVYREIFSYKKD-VTIIALSILVAGGLYPVFALLYAKYVSTLFDFAN---LEANSNKYSLYILVIAIAMFISETLKN 887 (1466)
T ss_pred hHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456677777777654 5777778889999999999999999997643211 112233456667777788888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhc--cCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDK--EINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
++..++++++..++|.++|+|++++|++||++ + ++|++++|+++|++.++.++...+..++..++++++++++++++
T Consensus 888 ~~~~~~~~~~~~~lR~~lf~~ll~~~~~~fd~~~~-~~G~l~srl~~Dv~~l~~~~~~~l~~~~~~i~~~i~~~~~~~~~ 966 (1466)
T PTZ00265 888 YYNNVIGEKVEKTMKRRLFENILYQEISFFDQDKH-APGLLSAHINRDVHLLKTGLVNNIVIFTHFIVLFLVSMVMSFYF 966 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999986 6 89999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH-----------------HHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLA-SQ-----------------KQAADSLAATVVAQTIGSIRTVASFTGEQQ 265 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~-~~-----------------~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 265 (1236)
+|.+++++++++ +++...+.++.+... ++ .++..++.+..++|.++|+++||+|+.|+.
T Consensus 967 ~~~l~l~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~tVka~~~e~~ 1043 (1466)
T PTZ00265 967 CPIVAAVLTGTY---FIFMRVFAIRARLTANKDVEKKEINQPGTVFAYNSDDEIFKDPSFLIQEAFYNMNTVIIYGLEDY 1043 (1466)
T ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHhhhccccccccchhhhHHHHHHHHHHHHHHHhcHHHHHHhcchHH
Confidence 999988765443 333444444433221 11 234467789999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 266 ASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCL 345 (1236)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~ 345 (1236)
+.++|.+..++..+...+.....++..++..++..+..++++|+|++++.+|.+|+|++++++.+++....++..+...+
T Consensus 1044 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~lv~~g~it~g~l~~~~~~~~~~~~~~~~l~~~~ 1123 (1466)
T PTZ00265 1044 FCNLIEKAIDYSNKGQKRKTLVNSMLWGFSQSAQLFINSFAYWFGSFLIRRGTILVDDFMKSLFTFLFTGSYAGKLMSLK 1123 (1466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888899999999998889999999999999999999999999998877766667788888999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCC---CCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCC
Q 040099 346 SAFAAGQAAAFKFFEAINRKPEIDLCCVNGKK---LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTS 422 (1236)
Q Consensus 346 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~---~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 422 (1236)
..++++++|++|++++++.+++++..+..+.. ++...+.|+|+||+|+||++++.++|+|+||+|+||+++||||||
T Consensus 1124 ~~~~~a~~a~~ri~~ll~~~~~~~~~~~~~~~~~~~~~~~g~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~S 1203 (1466)
T PTZ00265 1124 GDSENAKLSFEKYYPLIIRKSNIDVRDNGGIRIKNKNDIKGKIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGET 1203 (1466)
T ss_pred HHHHHHHHHHHHHHHHHCCCCcCCCCCCcccccccCCCCCceEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCC
Confidence 99999999999999999987654321111111 123457899999999998665568999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCC------------------------------------------------------CCcEEEECC
Q 040099 423 GSGKSTVISLIQRFYDP------------------------------------------------------QAGEVLIDG 448 (1236)
Q Consensus 423 GsGKSTl~~ll~~~~~~------------------------------------------------------~~G~i~~~g 448 (1236)
|||||||+++|+|+|+| ++|+|++||
T Consensus 1204 GsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG 1283 (1466)
T PTZ00265 1204 GSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQGDEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDG 1283 (1466)
T ss_pred CCCHHHHHHHHHHhCCCccccccccccccccccccccccccccccccccccccccccccccccccccccCCCCCeEEECC
Confidence 99999999999999999 699999999
Q ss_pred eecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 449 ~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
+|+++++.+++|++||||+|+|+||++||+|||+||+|+++++++++||+.+++++||.+||+||||.|||+|.+|||||
T Consensus 1284 ~di~~~~~~~lR~~i~~V~Qep~LF~gTIreNI~~g~~~at~eeI~~A~k~A~l~~fI~~LP~GydT~VGe~G~~LSGGQ 1363 (1466)
T PTZ00265 1284 VDICDYNLKDLRNLFSIVSQEPMLFNMSIYENIKFGKEDATREDVKRACKFAAIDEFIESLPNKYDTNVGPYGKSLSGGQ 1363 (1466)
T ss_pred EEHHhCCHHHHHhhccEeCCCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCccccCCccCCCCCcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEEC----CEEE-E
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQ----GKIV-E 601 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~----G~i~-~ 601 (1236)
||||||||||+++|+|||||||||+||+++|+.|+++|.++. +++|+|+||||++++++||+|+||++ |+++ |
T Consensus 1364 kQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~I~~~L~~~~~~~~~TvIiIaHRlsti~~aD~Ivvl~~~~~~G~iv~e 1443 (1466)
T PTZ00265 1364 KQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAHRIASIKRSDKIVVFNNPDRTGSFVQA 1443 (1466)
T ss_pred HHHHHHHHHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHhccCCCEEEEEechHHHHHhCCEEEEEeCCCCCCCEEEE
Confidence 999999999999999999999999999999999999999984 68999999999999999999999999 9955 8
Q ss_pred EeCcccccccccchhhhhHHhh
Q 040099 602 KGTHSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 602 ~g~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+|+||+++.+|.|+++++.|
T Consensus 1444 ~Gth~eLl~~~~g~Y~~l~~~~ 1465 (1466)
T PTZ00265 1444 HGTHEELLSVQDGVYKKYVKLA 1465 (1466)
T ss_pred ecCHHHHHhcCCChHHHHHhhc
Confidence 9999999974379999998765
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-89 Score=862.68 Aligned_cols=565 Identities=35% Similarity=0.527 Sum_probs=508.5
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
...+++++++.+++++ .++.++++.++.+++....|+++++++|.+....+. ..+......++++.++..++.++
T Consensus 146 ~~~~~~l~~~~~~~~~-~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~l 220 (711)
T TIGR00958 146 ADLLFRLLGLSGRDWP-WLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKGP----PALASAIFFMCLLSIASSVSAGL 220 (711)
T ss_pred hhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999887755 456677777778888888899999999987543222 11222233344455667788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+.+.++..++|.++|++++++|++||++. ++|++++|+++|++.+++.+...+..++.+++.+++++++++++
T Consensus 221 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~f~~~-~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~ 299 (711)
T TIGR00958 221 RGGSFNYTMARINLRIREDLFRSLLRQDLGFFDEN-KTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWL 299 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999999998 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+
T Consensus 300 s~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 379 (711)
T TIGR00958 300 SPRLTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKR 379 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
.....+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++.++.+|++++++
T Consensus 380 ~~~~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~ 459 (711)
T TIGR00958 380 KALAYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLD 459 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 87777776666677777778888999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.+... ...+.+..+.|+|+||+|+||+++++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+
T Consensus 460 ~~~~~~~~~--~~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~ 537 (711)
T TIGR00958 460 RKPNIPLTG--TLAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQ 537 (711)
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCE
Confidence 876643221 112223456899999999998655568999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|++||+|+++++.+++|++|+||+|||++|++||+|||.+|.++.++++++++++.+++++|++++|+||||.+||+|.+
T Consensus 538 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~ 617 (711)
T TIGR00958 538 VLLDGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQ 617 (711)
T ss_pred EEECCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCc
Confidence 99999999999999999999999999999999999999999998899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||||+||||++++|+|||||||||+||+++|+.+++ . ...+++|+|+||||+++++.||+|++|++|+|+|+|
T Consensus 618 LSGGQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~-~-~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~G 695 (711)
T TIGR00958 618 LSGGQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE-S-RSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMG 695 (711)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH-h-hccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEee
Confidence 99999999999999999999999999999999999999998 3 334689999999999999999999999999999999
Q ss_pred Ccccccccccchhhhh
Q 040099 604 THSELLENPYGAYNRL 619 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~ 619 (1236)
+|+||+++ ++.|+++
T Consensus 696 t~~eL~~~-~~~y~~l 710 (711)
T TIGR00958 696 THKQLMED-QGCYKHL 710 (711)
T ss_pred CHHHHHhC-CCchHhc
Confidence 99999987 6888875
|
|
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-87 Score=852.72 Aligned_cols=564 Identities=27% Similarity=0.341 Sum_probs=507.9
Q ss_pred chHHHHHHh-hchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSF-ADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 45 ~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
..+++++++ ++++++ .++..++++++..++....|++++.++|.+....+. ..+...++.++++.++..++.++
T Consensus 121 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~ 195 (686)
T TIGR03797 121 LGLRDLLRFALRGARR-DLLAILAMGLLGTLLGMLVPIATGILIGTAIPDADR----SLLVQIALALLAAAVGAAAFQLA 195 (686)
T ss_pred ccHHHHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCh----hHHHHHHHHHHHHHHHHHHHHHH
Confidence 446677766 455544 345556666777777777888999999987643221 22333344455556667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+++.++..++|.++|+|++++|++||+++ ++|++++|++ |++.+++++...+...+.+.+.+++.+++++++
T Consensus 196 ~~~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 273 (686)
T TIGR03797 196 QSLAVLRLETRMDASLQAAVWDRLLRLPVSFFRQY-STGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYY 273 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 9999999997 899999999998888888888888899999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+
T Consensus 274 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 353 (686)
T TIGR03797 274 SWKLALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELS 353 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+...+...+..++..+..++++|+|++++.+|.+|+|+++++..+...+..|+.++...+..++++..+.+|+.++++
T Consensus 354 ~~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~ 433 (686)
T TIGR03797 354 AQRIENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILE 433 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 99988888888888888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.+... ..+....+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+|+|+|+|+|++|+
T Consensus 434 ~~~e~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~ 509 (686)
T TIGR03797 434 ALPEVDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGS 509 (686)
T ss_pred CCcccccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCE
Confidence 766543211 1122345689999999999743 467999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|++||+|+++++.+++|++||||||||++|++||+|||.+++| +++++++++++.+++++++.++|+||||.+||+|.+
T Consensus 510 I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~-~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~ 588 (686)
T TIGR03797 510 VFYDGQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAP-LTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGT 588 (686)
T ss_pred EEECCEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCC-CCHHHHHHHHHHcCcHHHHHhccccccccccCCCCC
Confidence 9999999999999999999999999999999999999999998 899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++ ++|+|+||||+++++.||+|+||++|+|+++|
T Consensus 589 LSGGQrQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 589 LSGGQRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQG 666 (686)
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999886 68999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+||+++ ++.|+++++.|
T Consensus 667 ~~~~Ll~~-~~~y~~l~~~q 685 (686)
T TIGR03797 667 TYDELMAR-EGLFAQLARRQ 685 (686)
T ss_pred CHHHHHhC-CcHHHHHHHhc
Confidence 99999987 79999998754
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-87 Score=831.41 Aligned_cols=567 Identities=22% Similarity=0.313 Sum_probs=500.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
++++++|.+++++ .++++++++++..++....|++++.++|.....................+++++++..++.++..+
T Consensus 4 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (574)
T PRK11160 4 LLPFLKLYKRHWF-MLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERL 82 (574)
T ss_pred hHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 5567788888765 345667777777777777888999999974311110000000111122344455677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
+..+.+.++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+++++.+.++.++..+++++++++++++++|+
T Consensus 83 ~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 161 (574)
T PRK11160 83 VSHDATFRVLTHLRVFTFSKLLPLSPAGLARY-RQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLT 161 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccChHhhccC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVI-AGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 207 l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
+++++++++|++++ +..++.++.++..++.++..+++++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 162 l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 241 (574)
T PRK11160 162 LALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQA 241 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888887665 45777888899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLI-GSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
+..+...++..++..+..++++++|+++ .+|.+++|.+++++.+... ...|+..+...+..++++.++++|+.++++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~-~~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~ 320 (574)
T PRK11160 242 NLTGLSQALMILANGLTVVLMLWLAAGG-VGGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQ 320 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 9999888888888888888899999998 4899999999998877644 3568888888899999999999999999998
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.+... . .......+.|+|+||+|+|+++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 321 ~~~~~~~~-~-~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I 397 (574)
T PRK11160 321 KPEVTFPT-T-STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEI 397 (574)
T ss_pred CCCCCCCc-c-cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 76543221 1 1112234679999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
++||+|+++++.+++|++|+||+|||++|++||+|||++++|++++++++++++.+++++|+.+ |+||||.+||+|.+|
T Consensus 398 ~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~L 476 (574)
T PRK11160 398 LLNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQL 476 (574)
T ss_pred EECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999 999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|++|++|++++.|+
T Consensus 477 SgGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~ 556 (574)
T PRK11160 477 SGGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGT 556 (574)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHH
Q 040099 605 HSELLENPYGAYNRLIR 621 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~~~~ 621 (1236)
|+||+++ +|.|+++|+
T Consensus 557 ~~~l~~~-~g~y~~l~~ 572 (574)
T PRK11160 557 HQELLAQ-QGRYYQLKQ 572 (574)
T ss_pred HHHHHhc-CcHHHHHHh
Confidence 9999988 799999885
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-87 Score=854.12 Aligned_cols=565 Identities=26% Similarity=0.370 Sum_probs=507.9
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+++++++++++++. ++..++++++..++....|++++.++|.+...... ..+..+...++++.++..++.+++
T Consensus 142 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 216 (708)
T TIGR01193 142 NSLLKFIPLITRQKKL-IVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKMM----GTLGIISIGLIIAYIIQQILSYIQ 216 (708)
T ss_pred chHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577888888887654 34555566666677777888999999987543221 223333344445556677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++..+.+.++..++|.++|+|++++|+.||+++ ++|++++|++ |++.+++++...+...+.+++++++.++++++++
T Consensus 217 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~f~~~-~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 294 (708)
T TIGR01193 217 IFLLNVLGQRLSIDIILSYIKHLFELPMSFFSTR-RTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQN 294 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-chhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999998 9999999998 9999999999888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||+||.|+.+.++|++...+..+...+.
T Consensus 295 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 374 (708)
T TIGR01193 295 MLLFLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKY 374 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
....+....+..++..+..++++|+|++++.+|.+|+|+++++..+...+..|+.++...+..++++.++.+|+.++++.
T Consensus 375 ~~~~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 454 (708)
T TIGR01193 375 QKADQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLV 454 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888777777778888888899999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.+... .....+...+.|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 455 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I 531 (708)
T TIGR01193 455 DSEFINKK-KRTELNNLNGDIVINDVSYSYGY--GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEI 531 (708)
T ss_pred CCcccccc-cccCCCCCCCcEEEEEEEEEcCC--CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEE
Confidence 76543221 10112334578999999999973 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcC-CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
++||+|+++++.+++|++||||||||+||++||+|||.++ ++++++++++++++.+++++++.++|+||||.+||+|.+
T Consensus 532 ~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~ 611 (708)
T TIGR01193 532 LLNGFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSS 611 (708)
T ss_pred EECCEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCC
Confidence 9999999999999999999999999999999999999999 578899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||||+||||++++|+|||||||||+||+++|+.+.+.|+++ +++|+|+||||+++++.||+|++|++|+++++|
T Consensus 612 LSgGQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 612 ISGGQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred CCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999999885 689999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHH
Q 040099 604 THSELLENPYGAYNRLIR 621 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~ 621 (1236)
+|+||+++ +|.|+++++
T Consensus 691 ~~~~L~~~-~~~y~~l~~ 707 (708)
T TIGR01193 691 SHDELLDR-NGFYASLIH 707 (708)
T ss_pred CHHHHHhc-CCcHHHHhh
Confidence 99999987 789998874
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-86 Score=849.12 Aligned_cols=565 Identities=24% Similarity=0.302 Sum_probs=506.3
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..++.++++++++++. +...++++++..++....|++++.++|.+....+. ..+..+...++++.++.+++.+++
T Consensus 140 ~~~~~~~~~l~~~~~~-~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 214 (710)
T TIGR03796 140 SLLRALWRRLRGSRGA-LLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGRQ----DWLRPLLLGMGLTALLQGVLTWLQ 214 (710)
T ss_pred ccHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777888777553 34455555666666667788899999986543221 112233344445556677888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++...++.++..++|.++|+|++++|+++|+++ ++|++++|+++| +.+++++...+..++.+++++++.++++++++
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~~~~~-~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 292 (710)
T TIGR03796 215 LYYLRRLQIKLAVGMSARFLWHILRLPVRFFAQR-HAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYD 292 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCC-cccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999988 78999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++.+|+.+++..++.++.++..++.++..++.++.+.|.++|+++||++++|+.+.++|.+...+..+...+.
T Consensus 293 ~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 372 (710)
T TIGR03796 293 PVLTLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQEL 372 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998888
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
.+..++...+..++..+..++++++|++++.+|.+|+|+++++..+...+..|+.++...+..++++..+.+|+.++++.
T Consensus 373 ~~~~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 452 (710)
T TIGR03796 373 GVLTQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRN 452 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCcccccc---C-CCCC-CCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 365 KPEIDLCCV---N-GKKL-DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 365 ~~~~~~~~~---~-~~~~-~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
+++.+.... . .... +...+.|+++||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|
T Consensus 453 ~~e~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p 531 (710)
T TIGR03796 453 PVDPLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQP 531 (710)
T ss_pred CCccccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCC
Confidence 765432110 0 0111 2335689999999999853 35799999999999999999999999999999999999999
Q ss_pred CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccC
Q 040099 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGE 519 (1236)
Q Consensus 440 ~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~ 519 (1236)
++|+|++||+|+++++.+++|++|+||||+|++|++||+|||.+++|++++++++++++.+++++++.++|+||||.+||
T Consensus 532 ~~G~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e 611 (710)
T TIGR03796 532 WSGEILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAE 611 (710)
T ss_pred CCcEEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceecc
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEE
Q 040099 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKI 599 (1236)
Q Consensus 520 ~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i 599 (1236)
+|.+|||||||||+||||++++|+|||||||||+||+++|+.+.+.|++ .++|+|+||||+++++.||+|++|++|+|
T Consensus 612 ~G~~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i 689 (710)
T TIGR03796 612 GGANLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKV 689 (710)
T ss_pred CCCCCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEE
Confidence 9999999999999999999999999999999999999999999999987 58999999999999999999999999999
Q ss_pred EEEeCcccccccccchhhhhH
Q 040099 600 VEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 600 ~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+++|+|+||+++ ++.|++++
T Consensus 690 ~~~G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 690 VQRGTHEELWAV-GGAYARLI 709 (710)
T ss_pred EEecCHHHHHHc-CCcHHHHh
Confidence 999999999987 78999876
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-86 Score=842.03 Aligned_cols=557 Identities=25% Similarity=0.358 Sum_probs=501.8
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+++++++++++++. +...++++++..++....|++++.++|.+....+. ..+..+...++++.++..++.+++
T Consensus 133 ~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~ 207 (694)
T TIGR03375 133 RPKHWFWSTLKESWPL-YRDVLIASLLINLLALASPLFVMNVYDRVVPNQAF----ETLWVLAIGVALAIVFDFVLKTLR 207 (694)
T ss_pred ccchHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCcH----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566778888777553 44556666666777778888999999986543221 222333334444555677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++..+.+.++..++|.++|+|++++|+.| +++ ++|++++|+ +|++.+++++...+...+.+++++++.++++++++
T Consensus 208 ~~~~~~~~~~~~~~l~~~~~~~ll~l~~~~-~~~-~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 284 (694)
T TIGR03375 208 SYFLDVAGKKADLILSAKLFERVLGLRMEA-RPA-SVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIG 284 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCCccc-CCC-ChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999998 677 899999999 79999999999888888888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++.+|+++++..++.++.++..++.++..++.++.+.|+++|+++||+|+.|+.+.++|++..++..+...+.
T Consensus 285 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 364 (694)
T TIGR03375 285 GPLVWVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKS 364 (694)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
.+..+....+..++..++.++++++|++++.+|.+|+|++++++.+...+..|+..+...+..++++.++.+|+.++++.
T Consensus 365 ~~~~~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~ 444 (694)
T TIGR03375 365 RFLSNLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQL 444 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99998888888888888889999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.+... .....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|
T Consensus 445 ~~e~~~~~-~~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I 522 (694)
T TIGR03375 445 PVERPEGT-RFLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSV 522 (694)
T ss_pred CCCCCCCC-CCCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 76533211 111122345689999999999743 4579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
.+||+|+++++.+++|++|+||+|+|++|++||+|||.+++|++++++++++++.+++++++.++|+||||.+||+|.+|
T Consensus 523 ~idg~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~L 602 (694)
T TIGR03375 523 LLDGVDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSL 602 (694)
T ss_pred EECCEEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
||||||||+||||++++|+|||||||||+||+++|+.+.+.|.++.+++|+|+||||+++++.||+|++|++|+++|+|+
T Consensus 603 SgGQrQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~ 682 (694)
T TIGR03375 603 SGGQRQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGP 682 (694)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999999999999999988999999999999999999999999999999999
Q ss_pred ccccccc
Q 040099 605 HSELLEN 611 (1236)
Q Consensus 605 ~~~l~~~ 611 (1236)
|+||+++
T Consensus 683 ~~eLl~~ 689 (694)
T TIGR03375 683 KDQVLEA 689 (694)
T ss_pred HHHHHHH
Confidence 9999865
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-85 Score=817.59 Aligned_cols=566 Identities=32% Similarity=0.498 Sum_probs=505.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
++.++++.+++++. +++.+++.++..++....|++++.++|........ ..+....+.+++++++..++.++..+
T Consensus 13 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~ 87 (582)
T PRK11176 13 FRRLWPTIAPFKAG-LIVAGVALILNAASDTFMLSLLKPLLDDGFGKADR----SVLKWMPLVVIGLMILRGITSFISSY 87 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677777777654 34455555566666667788889899875432111 11222223334455667788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
+..+.+.++..++|..+|++++++|.++|++. ++|++++|+++|++.+++.+...+..++.+++++++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~~~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 166 (582)
T PRK11176 88 CISWVSGKVVMTMRRRLFGHMMGMPVSFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 207 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
+++++++++|+.+++..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 167 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T PRK11176 167 LSLILIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVS 246 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888899999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040099 287 ATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKP 366 (1236)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 366 (1236)
.......+..++..+..++++++|++++.+|.+|+|++++++.++.....|+..+...+..+++++.+.+|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 326 (582)
T PRK11176 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQ 326 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888889999999999999999999999999888899999999999999999999999999998765
Q ss_pred CccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 367 EIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
+.+... ...++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 327 ~~~~~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i 402 (582)
T PRK11176 327 EKDEGK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILL 402 (582)
T ss_pred cCCCCC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEE
Confidence 432111 1122234579999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 447 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
||+|+++++.+++|++|+||||||++|++||+|||.+|+++ .++++++++++.+++++++.++|+|+||.+||+|.+||
T Consensus 403 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LS 482 (582)
T PRK11176 403 DGHDLRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLS 482 (582)
T ss_pred CCEEhhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999764 78999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|+|+|+|+|
T Consensus 483 GGqrQRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~ 562 (582)
T PRK11176 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTH 562 (582)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhh
Q 040099 606 SELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~ 623 (1236)
++++++ ++.|++++..|
T Consensus 563 ~~l~~~-~~~y~~l~~~~ 579 (582)
T PRK11176 563 AELLAQ-NGVYAQLHKMQ 579 (582)
T ss_pred HHHHhC-CChHHHHHHHH
Confidence 999988 78999998765
|
|
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-85 Score=754.07 Aligned_cols=552 Identities=24% Similarity=0.354 Sum_probs=497.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 65 GTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYL 144 (1236)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~ 144 (1236)
..+++.+.++......+++..+++.+... +. ...+..+...++++.+++.++.+.+.....+.+.++..++|..++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~-~~---~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l 80 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEG-QL---FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVL 80 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhc-cc---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555556666777777765433 11 133444555667777888999999999999999999999999999
Q ss_pred HHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040099 145 ETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVV 224 (1236)
Q Consensus 145 ~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~ 224 (1236)
+|+.++++.+-++. ++|+..+.++..++.++.+++..++.++.+.+..+..++.+|++||.-++++++++|++.+++..
T Consensus 81 ~~l~~~gp~~~~~~-~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMil 159 (559)
T COG4988 81 DKLAKLGPAFIAQK-PAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMIL 159 (559)
T ss_pred HHHHhCChhhhcCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040099 225 MIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYG 304 (1236)
Q Consensus 225 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 304 (1236)
++++.++..+++...+..+++.+.|.++|+.|+|.|++.+...+++.+..+++++..++.-++.-....+..++.+++.+
T Consensus 160 vg~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiA 239 (559)
T COG4988 160 VGLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIA 239 (559)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999988888999999999999
Q ss_pred HHHHHHHHHHHh-cCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCC
Q 040099 305 LGVWYGAKLILE-KGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRG 383 (1236)
Q Consensus 305 ~~~~~g~~~v~~-g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~ 383 (1236)
++..+.+..... |.+|....+.++...--++.|++.++..++.-+.+.++.++++.+++.|++..+...........+.
T Consensus 240 lvAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~ 319 (559)
T COG4988 240 LVAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPI 319 (559)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCc
Confidence 888877777777 8999887777766666678999999999999999999999999999987654332110011111233
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
+++.+|++|.||++ +++++|+||++++|+.+||||+||||||||+++|+|+++|++|+|.+||+++++++.+.||+++
T Consensus 320 ei~~~~l~~~y~~g--~~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i 397 (559)
T COG4988 320 EISLENLSFRYPDG--KPALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQI 397 (559)
T ss_pred eeeecceEEecCCC--CcccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHe
Confidence 45566999999853 3899999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
+||+|+|++|++||||||++++++++++++.++++.+++.+|+.. |+|+||.+||+|.+|||||+||+++|||++++++
T Consensus 398 ~~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~ 476 (559)
T COG4988 398 SWVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPAS 476 (559)
T ss_pred eeeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCC
Confidence 999999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhh
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~ 623 (1236)
++|||||||+||.+||+.|.+.|.++.+++|+|+||||+..+++||+|+|||+|+++|+|+|++|.++ +|.|++++..|
T Consensus 477 l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q 555 (559)
T COG4988 477 LLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQ 555 (559)
T ss_pred EEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999998 89999999876
Q ss_pred hh
Q 040099 624 ET 625 (1236)
Q Consensus 624 ~~ 625 (1236)
+.
T Consensus 556 ~~ 557 (559)
T COG4988 556 EG 557 (559)
T ss_pred hc
Confidence 53
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-89 Score=749.14 Aligned_cols=552 Identities=27% Similarity=0.365 Sum_probs=470.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 65 GTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLA------LGAGVASFFQVACWMITGERQAAR 138 (1236)
Q Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1236)
+.++..+.-++....|.+.++++|.+...... .. ......+.+. -++.+++-++.++|..+.+-..++
T Consensus 220 cl~ll~i~rli~~~~pi~~k~iv~~ltap~~~---~~---~~~~~~v~L~flqg~gtgsG~~~nlRtfLWi~VqQyttR~ 293 (790)
T KOG0056|consen 220 CLFLLIIGRLINVSLPILSKWIVDELTAPDTF---QY---SLVFLYVFLKFLQGGGTGSGFLNNLRTFLWIPVQQYTTRE 293 (790)
T ss_pred HHHHHHHHHHHhhhhHHhHHHHHHhhcCcchh---hH---HHHHHHHHHHHHhcCCccccchhhhheeEEEEhhHhHHHH
Confidence 33333444455666778889999987633111 11 1111222222 233567778889999999999999
Q ss_pred HHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHH
Q 040099 139 IRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFL-IAFFKGWLLTLTMLSSIPP 217 (1236)
Q Consensus 139 lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~l~~l~~~p~ 217 (1236)
+-..+|+|+..++++|+-++ ++|+++.-++..++.+. ++...+.++...++-+.++++ +...+||..+++++++..+
T Consensus 294 ie~~lfrHlh~LSlrwHL~r-rtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~va~vYF~~~Fn~wFgLIVfl~m~l 371 (790)
T KOG0056|consen 294 IETELFRHLHNLSLRWHLNR-RTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGVAMVYFFIKFNIWFGLIVFLMMLL 371 (790)
T ss_pred HHHHHHHHHHhhceeeeecc-cccceeehhccCcchhh-HHHHHHhhcccHHHHhhhhhhhhhhhHhHHHHHHHHHHHHH
Confidence 99999999999999999998 99999988887766665 444444444444443333333 3445789999998888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040099 218 LVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVF 297 (1236)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1236)
...+...+..--.+..+++.....+..+...+++-+..|||-||+|+++.++|.+...++.+...|......+.+..-+.
T Consensus 372 Y~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAil~Yqk~E~ks~~sLnfLN~~Qn~ 451 (790)
T KOG0056|consen 372 YCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAILKYQKQEWKSLASLNFLNIVQNG 451 (790)
T ss_pred HhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 77666555555555666666666777778899999999999999999999999999999988888876666666666666
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCC
Q 040099 298 IIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKK 377 (1236)
Q Consensus 298 ~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~ 377 (1236)
+..++.+..-.+.+|+|..+.+|+|+++.|..|+++..+|+..++..+..+|+...-+++++++++++||+.+.+ ...+
T Consensus 452 Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiDmEnmfdllkee~eVvd~P-~a~p 530 (790)
T KOG0056|consen 452 IIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFIDMENMFDLLKEEPEVVDLP-GAPP 530 (790)
T ss_pred hhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhhHHHHHHHhhcCchhhcCC-CCCC
Confidence 666666666667788899999999999999999999999999999999999999999999999999998876644 2334
Q ss_pred CCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH
Q 040099 378 LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 378 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 457 (1236)
....+|.|+|+||+|+|+ +++++|+||||+++||+++|+|||||+||||++++|.|||+.++|+|.+||+||++....
T Consensus 531 l~~~~G~i~fsnvtF~Y~--p~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~~ 608 (790)
T KOG0056|consen 531 LKVTQGKIEFSNVTFAYD--PGKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQS 608 (790)
T ss_pred ccccCCeEEEEEeEEecC--CCCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHHH
Confidence 455678999999999996 567999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|++||+||||..||++||..||.||+|.+++||+.+|+++|++||-|..+|+||+|.|||+|-.||||||||+||||+
T Consensus 609 SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~t~VGERGLkLSGGEKQRVAiARt 688 (790)
T KOG0056|consen 609 SLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYNTRVGERGLKLSGGEKQRVAIART 688 (790)
T ss_pred HHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhhhhhhhcccccCCcchhhHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
++++|.|++|||+|||||..||+.|+.+|.++..+||.|+|+||+||+-+||.|+|+++|+|+|.|+|+||+.+++|.|+
T Consensus 689 iLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi~~G~IvErG~HeeLl~rdgG~Ya 768 (790)
T KOG0056|consen 689 ILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVISNGRIVERGRHEELLKRDGGAYA 768 (790)
T ss_pred HhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEEeCCeEeecCcHHHHHhccCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999899999
Q ss_pred hhHHhhhhhh
Q 040099 618 RLIRLQETCK 627 (1236)
Q Consensus 618 ~~~~~~~~~~ 627 (1236)
+||+.|+...
T Consensus 769 ~MWq~qqa~g 778 (790)
T KOG0056|consen 769 DMWQAQQAMG 778 (790)
T ss_pred HHHHHHHhcC
Confidence 9998876543
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-84 Score=827.19 Aligned_cols=568 Identities=27% Similarity=0.389 Sum_probs=511.6
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+.+++++++++++. +...++++++..++....|++++.++|.+....+. ..+..+.+.++++.++..++.+++
T Consensus 125 ~~~~~~~~~~~~~~~~-~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~~----~~l~~l~~~~~~~~~~~~~~~~l~ 199 (694)
T TIGR01846 125 FGFSWFIPAIIRYRKQ-FREVLLISLALQLFALVTPLLFQVVIDKVLVHRGL----STLSVLALAMLAVAIFEPALGGLR 199 (694)
T ss_pred CcHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCh----hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4577788887776553 34555566666666777888999999987543221 223333444555566677889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++....+.++..++|.++|+|++++|++||+++ ++|++++|+ +|++.+++++...+..++.++++.++.++++++++
T Consensus 200 ~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~f~~~-~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 277 (694)
T TIGR01846 200 TYLFAHLTSRIDVELGARLYRHLLGLPLGYFESR-RVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYS 277 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHcCCC-CHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999998 999999999 69999999998888888888887777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++++|+++++..++.++.++..++.++..++.++.+.|.++|+++||+||.|+.+.++|++..++..+...+.
T Consensus 278 ~~l~li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 357 (694)
T TIGR01846 278 PTLTGVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRV 357 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
.+..+....+..++..+..++++|+|++++.+|.+|+|+++++..+......|+..+...+..++++..+++|+.++++.
T Consensus 358 ~~~~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~ 437 (694)
T TIGR01846 358 TNLGNIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNS 437 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99888888888888888899999999999999999999999999999999999999999999999999999999999987
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.+... ....+...+.|+++||+|+|+++ ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|
T Consensus 438 ~~e~~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I 514 (694)
T TIGR01846 438 PTEPRSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQV 514 (694)
T ss_pred CCCccCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceE
Confidence 76543211 11123345689999999999743 3579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
++||+|+++++.+++|++|+||+|++++|++||+|||.+++|++++++++++++.+++++++.++|+|+||.+|++|.+|
T Consensus 515 ~idg~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~L 594 (694)
T TIGR01846 515 LVDGVDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANL 594 (694)
T ss_pred EECCEehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCC
Confidence 99999999999999999999999999999999999999999989999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
|||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+++++|+
T Consensus 595 SgGq~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~ 674 (694)
T TIGR01846 595 SGGQRQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGR 674 (694)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHhh
Q 040099 605 HSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~~~~~~ 623 (1236)
|+|++++ ++.|+++++.|
T Consensus 675 ~~~l~~~-~~~y~~l~~~~ 692 (694)
T TIGR01846 675 HEELLAL-QGLYARLWQQQ 692 (694)
T ss_pred HHHHHHc-CChHHHHHHhh
Confidence 9999988 79999998754
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-84 Score=806.08 Aligned_cols=566 Identities=24% Similarity=0.327 Sum_probs=489.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
+++++.|.+++++. +++.+++.++.+++.+..|+++++++|.+....+.. . .....+++.++++.++..++.+++.+
T Consensus 11 ~~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (592)
T PRK10790 11 LKRLLAYGSPWRKP-LGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLP-L-GLVAGLAAAYVGLQLLAAGLHYAQSL 87 (592)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc-h-hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666553 456666777777888888999999999764321211 0 11111222344444566778888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
.....+.++..++|.++|++++++|+++|++. ++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.
T Consensus 88 ~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (592)
T PRK10790 88 LFNRAAVGVVQQLRTDVMDAALRQPLSAFDTQ-PVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWR 166 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 207 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
+++++++++|+++++..++.++.++..++.++..++.++.+.|.+.|+++||+|+.|+.+.++|.+..++..+...+..+
T Consensus 167 l~li~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (592)
T PRK10790 167 MALVAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLR 246 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888889999999999999999999999999999999999998888888777766
Q ss_pred HHHHh-HHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 287 ATGLG-LGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 287 ~~~~~-~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
..+.. .++..++..+..++++++++. +.+|.+++|.+++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~ 325 (592)
T PRK10790 247 LDGFLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGP 325 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 65543 334444444433333334444 6899999999999999999999999999999999999999999999999865
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.... ...+...++|+|+||+|+|++ ++++|+|+||+|++||++||||+||||||||+++|+|+|+|++|+|+
T Consensus 326 ~~~~~~----~~~~~~~~~i~~~~v~f~y~~--~~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~ 399 (592)
T PRK10790 326 RQQYGN----DDRPLQSGRIDIDNVSFAYRD--DNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIR 399 (592)
T ss_pred CccCCC----CccCCCCCeEEEEEEEEEeCC--CCceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEE
Confidence 542211 111223467999999999974 35799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+||+|+++++.+++|++|+||||||++|++||+|||.+++ ++++++++++++.+++++++.++|+||||.+||+|.+||
T Consensus 400 idg~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~-~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LS 478 (592)
T PRK10790 400 LDGRPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGR-DISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLS 478 (592)
T ss_pred ECCEEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCC-CCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCC
Confidence 9999999999999999999999999999999999999998 679999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||||+|||||+++|+|||||||||+||+++++.|.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|
T Consensus 479 GGqrQRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~ 558 (592)
T PRK10790 479 VGQKQLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTH 558 (592)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCH
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhhhh
Q 040099 606 SELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~~~ 625 (1236)
+||+++ ++.|+++++.|..
T Consensus 559 ~~L~~~-~~~y~~l~~~~~~ 577 (592)
T PRK10790 559 QQLLAA-QGRYWQMYQLQLA 577 (592)
T ss_pred HHHHhC-CCHHHHHHHHHhh
Confidence 999988 7999999987643
|
|
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-83 Score=795.86 Aligned_cols=564 Identities=26% Similarity=0.358 Sum_probs=497.9
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
++++++|++++++ .++++++++++.+++.+..|+++++++|.+....+ .....+.++++.++..+..++..+
T Consensus 7 ~~~l~~~l~~~k~-~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~ 78 (585)
T TIGR01192 7 YVRALSYLNVHKN-RVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-------VLPTLALWAGFGVFNTIAYVLVAR 78 (585)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-------HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6678888888765 44667777778888888899999999997653211 111111122233334444555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
+....+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..++++++.++++++++|.
T Consensus 79 ~~~~~~~~~~~~lr~~~~~~l~~l~~~~~~~~-~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 157 (585)
T TIGR01192 79 EADRLAHGRRATLLTEAFGRIISMPLSWHQQR-GTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWR 157 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55566666667777899999999999999998 99999999999999999999999988888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 207 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
+++++++++|+++++..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 158 l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (585)
T TIGR01192 158 LSIVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLD 237 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998888888888
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040099 287 ATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKP 366 (1236)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 366 (1236)
..+...++..++..+..++++++|++++.+|.+|+|++++++.++.....|+.++...+..++++..+.+|+.++++.++
T Consensus 238 ~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~ 317 (585)
T TIGR01192 238 WWALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVF 317 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 88887777777888888889999999999999999999999999999999999999999999999999999999998765
Q ss_pred CccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 367 EIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
+.++.. .....+...+.++++||+|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+|+|++|+|.+
T Consensus 318 ~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~ 394 (585)
T TIGR01192 318 QREEPA-DAPELPNVKGAVEFRHITFEFAN--SSQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILI 394 (585)
T ss_pred cccCCc-cCCCCCCCCCeEEEEEEEEECCC--CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEE
Confidence 432211 11112223457999999999974 246999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 447 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
||.++++++.+++|++++||+|+|++|++|++|||.++.+++++++++++++.+++++++.++|+|++|.+|++|.+|||
T Consensus 395 ~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSg 474 (585)
T TIGR01192 395 DGIDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSG 474 (585)
T ss_pred CCEEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCH
Confidence 99999999999999999999999999999999999999888899999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcc
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~ 606 (1236)
|||||++|||||+++|++||||||||+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|++++.|+|+
T Consensus 475 Gq~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~ 554 (585)
T TIGR01192 475 GERQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQ 554 (585)
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred cccccccchhhhhHHhh
Q 040099 607 ELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 607 ~l~~~~~~~y~~~~~~~ 623 (1236)
+++++ ++.|++++..+
T Consensus 555 ~l~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 555 ELIQK-DGRFYKLLRRS 570 (585)
T ss_pred HHHHC-CChHHHHHHhC
Confidence 99987 79999998765
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-83 Score=801.75 Aligned_cols=566 Identities=33% Similarity=0.518 Sum_probs=513.8
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVA 126 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (1236)
+++++++.+++++ .++++++++++.+++.+..|++++.++|........ ..+......++++.++..++.+++.+
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----~~~~~~~~~~~~~~i~~~~~~~~~~~ 76 (571)
T TIGR02203 2 FRRLWSYVRPYKA-GLVLAGVAMILVAATESTLAALLKPLLDDGFGGRDR----SVLWWVPLVVIGLAVLRGICSFVSTY 76 (571)
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCch----hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456666766654 456777777888888888899999999965432111 22333344455666677788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 127 CWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWL 206 (1236)
Q Consensus 127 ~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (1236)
+..+.+.++..++|..+|+++++.|.++|++. ++|++++|+++|++.+++++...+..++.+++.+++.++++++++|.
T Consensus 77 ~~~~~~~~~~~~lr~~l~~~~~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~ 155 (571)
T TIGR02203 77 LLSWVSNKVVRDIRVRMFEKLLGLPVSFFDRQ-PTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQ 155 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999999998 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 207 LTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 207 l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
+++++++..|+.+++..++.++.++..++.++..++..+.+.|.++|+++||.++.++.+.++|++..++..+...+..+
T Consensus 156 l~~i~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (571)
T TIGR02203 156 LTLIVVVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTS 235 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040099 287 ATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKP 366 (1236)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 366 (1236)
..+....+..++..+..++++++|++++.+|.+|+|.++++..++.....|+..+...+..+++++++.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (571)
T TIGR02203 236 AGSISSPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPP 315 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999998766
Q ss_pred CccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 367 EIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
+.+... ...++..++|+++||+|+|+++ ++++|+|+||+|++||+++|+|+||||||||+++|+|+|+|++|+|++
T Consensus 316 ~~~~~~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i 391 (571)
T TIGR02203 316 EKDTGT---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILL 391 (571)
T ss_pred CCCCCC---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEE
Confidence 543211 1112234679999999999753 357999999999999999999999999999999999999999999999
Q ss_pred CCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC-CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 447 DGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 447 ~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
||+|+++++.+++|++|+||||+|++|++|++|||.++++ +.++++++++++.+++++++.++|+|+||.+||+|.+||
T Consensus 392 ~g~~i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LS 471 (571)
T TIGR02203 392 DGHDLADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLS 471 (571)
T ss_pred CCEeHHhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCC
Confidence 9999999999999999999999999999999999999986 789999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||||+||||++++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.+..||+|++|++|++++.|+|
T Consensus 472 gGqrQRiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~ 551 (571)
T TIGR02203 472 GGQRQRLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTH 551 (571)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhh
Q 040099 606 SELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~ 623 (1236)
++++++ ++.|++++..+
T Consensus 552 ~~l~~~-~~~~~~~~~~~ 568 (571)
T TIGR02203 552 NELLAR-NGLYAQLHNMQ 568 (571)
T ss_pred HHHHHc-CCHHHHHHHHh
Confidence 999987 68899887654
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-84 Score=802.05 Aligned_cols=538 Identities=35% Similarity=0.583 Sum_probs=483.5
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 685 EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRI 764 (1236)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 764 (1236)
.+ .+.++.++.++........+++++.+++.... .......+...++++.++..++.++..+...+.+.+...++
T Consensus 13 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~l 87 (567)
T COG1132 13 YK-LLLLAILLLLLSALLSLLLPLLIGRIIDALLA----DLGELLELLLLLLLLALLGGVLRALQSYLGSRLGQKIVADL 87 (567)
T ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45 56666666666666666777777777776651 12223344555556666777788888888888889999999
Q ss_pred HHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Q 040099 765 RSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLL 844 (1236)
Q Consensus 765 r~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~ 844 (1236)
|.++++++++.|++||++ +++|++++|+++|++.++..+.+....+...+..+++.+++++..+|.+++++++..|++
T Consensus 88 r~~~~~~l~~~~~~~~~~--~~~g~l~~~~t~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~~~ 165 (567)
T COG1132 88 RRDLFEKLLRLPLSFFDK--AKSGDLISRLTNDVEAVSNLVSTVLVLVFTSILLLIGSLVLLFSLSWRLALILLLILPLL 165 (567)
T ss_pred HHHHHHHHHhCCHHHhCc--CCcchHHHHHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 999999999999999994 789999999999999999999988666666788899999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 845 GITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFF 924 (1236)
Q Consensus 845 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 924 (1236)
.+...+..++.++..+..++..++..+.+.|.++|+++||+|+.++...+++.+..+...+...+.........++...+
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (567)
T COG1132 166 ALVLSLLARKSRKLSRRVREALGELNARLLESLSGIRVIKAFGAEDRELKRFEEANEELRRANLRASRLEALLAPLMLLL 245 (567)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99888888777888888888899999999999999999999999999999999999999888888888888888888899
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCcc
Q 040099 925 FFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTL 1004 (1236)
Q Consensus 925 ~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~ 1004 (1236)
..+..++++++|.+++..+.+++|.+++++.+......++..+......+..+..+++|++++++.+++....+.. .
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~---~ 322 (567)
T COG1132 246 SSLGTVLVLALGGFLVLSGSLTVGALAAFILYLLRLLTPILQLGEVVSLLQRASAAAERLFELLDEEPEVEDPPDP---L 322 (567)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCC---C
Confidence 9999999999999999999999999999999999999999999999999999999999999999986654322211 2
Q ss_pred CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH
Q 040099 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1005 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~ 1084 (1236)
....|+|+|+||+|+|++ ++++|+|+||+|+|||++|||||||||||||+++|+|||+|++|+|+|||+||++++.++
T Consensus 323 ~~~~~~I~f~~vsf~y~~--~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~~~ 400 (567)
T COG1132 323 KDTIGSIEFENVSFSYPG--KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISLDS 400 (567)
T ss_pred CCCCCeEEEEEEEEEcCC--CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCHHH
Confidence 334578999999999985 346999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1085 LRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
||++|++|||||+||+|||+|||. +.|+++|||+++|+||||.|||+|.+||||||||||||||+
T Consensus 401 lr~~I~~V~Qd~~LF~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~vge~G~~LSgGQrQrlaiARal 480 (567)
T COG1132 401 LRKRIGIVSQDPLLFSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTIVGERGVNLSGGQRQRLAIARAL 480 (567)
T ss_pred HHHhccEEcccceeecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccceecCCCccCCHHHHHHHHHHHHH
Confidence 999999999999999999999995 77899999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
++||||||||||||+||++||+.|++++++..++||+|+||||++|+++||+|+|||+|+|+|.|+|+||+++ +|.|++
T Consensus 481 l~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~aD~IiVl~~G~i~e~G~h~eLl~~-~g~y~~ 559 (567)
T COG1132 481 LRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKNADRIIVLDNGRIVERGTHEELLAK-GGLYAR 559 (567)
T ss_pred hcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHhCCEEEEEECCEEEEecCHHHHHHc-CCHHHH
Confidence 9999999999999999999999999999988888999999999999999999999999999999999999997 999999
Q ss_pred hhhccC
Q 040099 1230 LIEPHT 1235 (1236)
Q Consensus 1230 L~~~q~ 1235 (1236)
||+.|.
T Consensus 560 l~~~~~ 565 (567)
T COG1132 560 LYQAQG 565 (567)
T ss_pred HHHHhh
Confidence 999875
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-84 Score=795.82 Aligned_cols=526 Identities=22% Similarity=0.296 Sum_probs=461.3
Q ss_pred HHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 48 HKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVAC 127 (1236)
Q Consensus 48 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (1236)
+++++|.+++++. ++++++++++.+++....|++++.++|..... +. . .........++++.++..++.++..++
T Consensus 2 ~~l~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (529)
T TIGR02868 2 LRILPLLQPRTRR-LVVAILLGALALGSAVALLGVSAWLISRAAEM-PP-V--LYLSVAAVAVRAFGIGRAVFRYLERLV 76 (529)
T ss_pred hhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-ch-h--HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566777777653 45566666777777777888999999975432 11 0 001111112223445667788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 128 WMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLL 207 (1236)
Q Consensus 128 ~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 207 (1236)
..+.+.++..++|.++|+|++++|.+||++. ++|++++|+++|++.+++.+...+..++.+++.+++.++++++++|.+
T Consensus 77 ~~~~~~~~~~~lr~~~~~~ll~~~~~~~~~~-~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 155 (529)
T TIGR02868 77 GHDAALRSLGRLRVRVYDRLARLALAGRRRF-QTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPA 155 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhhccCccccccC-ChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999998 999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 208 TLTMLSSIPPLVIAGVVMI-KLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGL 286 (1236)
Q Consensus 208 ~l~~l~~~p~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 286 (1236)
++++++.+|++.++...+. +..++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+
T Consensus 156 ~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (529)
T TIGR02868 156 ALVLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAAR 235 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888888766654444 445666777888899999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 040099 287 ATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKP 366 (1236)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~ 366 (1236)
..+...++..++..+..++++|+|++++.+|.+|+|.+++++.+......|+..+...+..++++.++.+|+.++++.++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~ 315 (529)
T TIGR02868 236 ATGLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKG 315 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998766
Q ss_pred CccccccC-CCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 367 EIDLCCVN-GKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 367 ~~~~~~~~-~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
+.+..... ....++..+.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.
T Consensus 316 ~~~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~ 393 (529)
T TIGR02868 316 PRPEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVT 393 (529)
T ss_pred CcCCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEE
Confidence 53221100 01111234579999999999743 4699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+||+|++++ .+++|++|+||||+|+||++||+|||++|+|+++++++++|++.+++++|+.++|+||||.+||+|.+||
T Consensus 394 i~g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LS 472 (529)
T TIGR02868 394 LDGVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLS 472 (529)
T ss_pred ECCEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCC
Confidence 999999999 9999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 582 (1236)
||||||||||||++++|+|||||||||+||+++|+.|++.+.++.+++|+|+||||+
T Consensus 473 GGQrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 473 GGERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999999988899999999995
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-83 Score=796.62 Aligned_cols=566 Identities=28% Similarity=0.382 Sum_probs=495.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.+++++++.+++++ .+.+.++++++..++.+..|++++.++|.+..... .....+.+++++++..+..++..
T Consensus 6 ~~~~l~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 77 (588)
T PRK13657 6 LYARVLQYLGAEKR-LGILLAVANVLLAAATFAEPILFGRIIDAISGKGD-------IFPLLAAWAGFGLFNIIAGVLVA 77 (588)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-------HHHHHHHHHHHHHHHHHHHHHHH
Confidence 46677777776654 34556666667777777788899999997653211 11112222233333334445555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++..+...++..++|.++|+|++++|+.+|++. ++|++++|+++|++.+.+.+...+..++..++.+++.++++++++|
T Consensus 78 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 156 (588)
T PRK13657 78 RHADRLAHRRRLAVLTEYFERIIQLPLAWHSQR-GSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNW 156 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCCHHHHCcC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555566666666777799999999999999998 9999999999999999999888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++||.|+.++.+.++|.+..++..+...+..
T Consensus 157 ~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (588)
T PRK13657 157 RLSLVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVL 236 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998889999999999999999999999999999999999999999999999999999999999888888
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
...+....+..++..+..++++++|++++.+|.+|+|++++++.+......|+..+...+..++++..+++|+.++++.+
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~ 316 (588)
T PRK13657 237 SWWALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAV 316 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 88888777778888888888999999999999999999999999999999999999999999999999999999999875
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.+... .....+...+.|+++||+|+||+ ++++|+|+||+++|||++||+|+||||||||+++|+|+|+|++|+|+
T Consensus 317 ~~~~~~~-~~~~~~~~~~~I~~~~vsf~y~~--~~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~ 393 (588)
T PRK13657 317 PDVRDPP-GAIDLGRVKGAVEFDDVSFSYDN--SRQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRIL 393 (588)
T ss_pred cccCCCC-CCCCcCCCCCeEEEEEEEEEeCC--CCceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEE
Confidence 5432211 11111223457999999999974 24699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+||+|+++++.+++|++|+||||+|++|++||+|||++++|+.++++++++++.+++++++.++|+|+||.+|++|.+||
T Consensus 394 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LS 473 (588)
T PRK13657 394 IDGTDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLS 473 (588)
T ss_pred ECCEEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||||+|||||+++|+|||||||||+||+++++.+.+.|.++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 474 gGq~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~ 553 (588)
T PRK13657 474 GGERQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553 (588)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCH
Confidence 99999999999999999999999999999999999999999998789999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhhh
Q 040099 606 SELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~~ 624 (1236)
++++++ ++.|++++..+.
T Consensus 554 ~~l~~~-~~~y~~l~~~~~ 571 (588)
T PRK13657 554 DELVAR-GGRFAALLRAQG 571 (588)
T ss_pred HHHHHC-CChHHHHHHHhh
Confidence 999987 799999987553
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-83 Score=728.80 Aligned_cols=569 Identities=28% Similarity=0.389 Sum_probs=484.5
Q ss_pred HHHHHHhhchhh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-cchhHHHhhHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLD----SVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQN-ATKTLAIHGVLKVSKKFVYLALGAGVAS 121 (1236)
Q Consensus 47 ~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1236)
.+.+..|.+|.. +..++.++++.+.+..+....|.+++.++|.+... ..+ .........+..+.++.++..+++
T Consensus 13 ~~~l~~~~~~k~~p~~r~~v~~~l~~l~~aK~l~v~vp~~~~~~id~l~~~~~~~-a~~~~~~~~~~~y~iar~~s~~F~ 91 (591)
T KOG0057|consen 13 LRSLVSYKWPKSRPVLRFRVFPALGLLLGAKILNVQVPFIFKLIIDGLNDADGNP-AVLSTITALLAGYGIARLGSSVFN 91 (591)
T ss_pred HHHHHhhheecCCceeeehHHHHHHHHHhhhHhheehHHHHHHHHhhhhhcccCc-chhhhhhHHHHHHHHHHHHHHHHH
Confidence 445555555443 22344445555555678888899999999986311 111 111222233445566667788999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHH
Q 040099 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGF-LIA 200 (1236)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (1236)
.++...+.++.+++..+.-.++|+|++++++++|.+. .+|++.+.+..-...|..++...+..++..++-+.... .+-
T Consensus 92 el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~~~~~~~-~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~ 170 (591)
T KOG0057|consen 92 ELRNFVFAKVAQRVIRDSSSDVFRHLMSLDLSFFLSR-GTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILY 170 (591)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcCC-CcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999998 99999999999999999999888888777766554433 334
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 040099 201 FFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKS 280 (1236)
Q Consensus 201 ~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 280 (1236)
.-..+..+++++..+..+..++......-.+..++..++.......+-|++.+..+||+||.|++|.++|+....++.+.
T Consensus 171 ~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~ 250 (591)
T KOG0057|consen 171 YKFGAAFALITLGTVGAYAAFTIVVTRWRNRFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERA 250 (591)
T ss_pred HHhchHHHHHHHHHHHHhheeEEeehhHHHHHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHh
Confidence 44566677777776666666666666666666677788889999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 281 SVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFE 360 (1236)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~ 360 (1236)
..+.....++....-.++.......+.+.|..-+.+|.+|+|+++.......++..|+..++..+..+.++..-+.-.+.
T Consensus 251 ~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~ 330 (591)
T KOG0057|consen 251 GLKYSSSLAFLNFGQKAIFSVALTFIMVLGSNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFI 330 (591)
T ss_pred hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHh
Confidence 99988888887777777777788888888988899999999999999888899999999999988888887777766665
Q ss_pred HhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 361 AINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 361 ~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
..+....+.+ .+.++...++.|+|+||+|+|+ +++++|+++||+|++||+|||||+|||||||++|+|.||++ +
T Consensus 331 l~~~~~~i~~---~~~~i~~~~~~I~F~dV~f~y~--~k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~ 404 (591)
T KOG0057|consen 331 LLEVDEDIQE---AALPIELFGGSIEFDDVHFSYG--PKRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-Y 404 (591)
T ss_pred hhhhhhhhhh---ccCCcccCCCcEEEEeeEEEeC--CCCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-c
Confidence 5443222221 1123344567899999999997 45679999999999999999999999999999999999999 9
Q ss_pred CcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCC
Q 040099 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520 (1236)
Q Consensus 441 ~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~ 520 (1236)
+|+|++||+|+++++++++|+.|||||||..||++||.+||.||++.+++||+.++|+.+++||-+.++|+||+|.+||+
T Consensus 405 sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGer 484 (591)
T KOG0057|consen 405 SGSILIDGQDIKEVSLESLRQSIGVVPQDSVLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGER 484 (591)
T ss_pred CCcEEECCeeHhhhChHHhhhheeEeCCcccccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEE
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIV 600 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~ 600 (1236)
|..|||||||||+||||+++||||+++|||||+||.+||+.+.+.+.+...+||+|+|.||++++++||+|++++||++.
T Consensus 485 G~~LSGGekQrvslaRa~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~ 564 (591)
T KOG0057|consen 485 GLMLSGGEKQRVSLARAFLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVK 564 (591)
T ss_pred ccccccchHHHHHHHHHHhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeCcccccccccchhhhhHHhhh
Q 040099 601 EKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|.|+|+||++ +.+.|+++|..|.
T Consensus 565 e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 565 EYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred EeccHHHHhh-hhhHHHHHhcccc
Confidence 9999999999 4899999998764
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-82 Score=790.04 Aligned_cols=544 Identities=26% Similarity=0.355 Sum_probs=485.4
Q ss_pred HHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCh
Q 040099 73 GLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDI 152 (1236)
Q Consensus 73 ~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~ 152 (1236)
.++..+.|++++.++|.+...... ...+..+...++++.++..++.++..++....+.++..++|.++|+|++++|+
T Consensus 8 ~~~~~~~p~~~~~iid~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~ 84 (569)
T PRK10789 8 AMLQLIPPKVVGIIVDGVTEQHMT---TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHP 84 (569)
T ss_pred HHHHHHHHHHHHHHHHHhccCCcc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCH
Confidence 344455677899999976432111 01122233334444556677788888888899999999999999999999999
Q ss_pred hhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 153 AFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIA-FFKGWLLTLTMLSSIPPLVIAGVVMIKLVGN 231 (1236)
Q Consensus 153 ~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~ 231 (1236)
++|++. ++|++++|+++|++.++..+...+..++..++.+++.++++ ++++|.+++++++++|+++++...+.++.++
T Consensus 85 ~~~~~~-~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~ 163 (569)
T PRK10789 85 EFYLRH-RTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHE 163 (569)
T ss_pred HHHcCC-CHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999998 99999999999999999888888888888877766666655 5899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040099 232 LASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGA 311 (1236)
Q Consensus 232 ~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 311 (1236)
..++.++..+++++.+.|.++|+++||+|+.|+.+.++|.+..++..+...+..+..+...++...+..++.++++++|+
T Consensus 164 ~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~ 243 (569)
T PRK10789 164 RFKLAQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGS 243 (569)
T ss_pred HHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999888888888877777777788888899999
Q ss_pred HHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEE
Q 040099 312 KLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVN 391 (1236)
Q Consensus 312 ~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~ 391 (1236)
+++.+|.+|+|+++++..+......|+..++..+..++++.++.+|+.++++.+++.+... ...+..++.|+++||+
T Consensus 244 ~lv~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~ 320 (569)
T PRK10789 244 WMVVNGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQ 320 (569)
T ss_pred HHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEE
Confidence 9999999999999999999999999999999999999999999999999998765532211 1122234679999999
Q ss_pred EECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCC
Q 040099 392 FSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 392 f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
|+|+.. ++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|++||+++++++..++|++|+||+|+|+
T Consensus 321 ~~y~~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~ 399 (569)
T PRK10789 321 FTYPQT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPF 399 (569)
T ss_pred EECCCC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCe
Confidence 999743 3579999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcC
Q 040099 472 LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551 (1236)
Q Consensus 472 l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~t 551 (1236)
+|++|++|||.++.++.++++++++++.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+||||||||
T Consensus 400 lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpt 479 (569)
T PRK10789 400 LFSDTVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDAL 479 (569)
T ss_pred eccccHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECcc
Confidence 99999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhh
Q 040099 552 SALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 552 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
|+||+++++.+.+.|+++.+++|+|+||||+++++.||+|++|++|+++++|+|++++++ ++.|++++..|..
T Consensus 480 s~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~~~ 552 (569)
T PRK10789 480 SAVDGRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQQL 552 (569)
T ss_pred ccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHhhh
Confidence 999999999999999998889999999999999999999999999999999999999987 7999999987643
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-83 Score=798.85 Aligned_cols=552 Identities=21% Similarity=0.275 Sum_probs=472.1
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 754 (1236)
+++++.+.+++++.++++++++++.+++.+..+++++.+++....+... ......+...++++.++..++.+++.+...
T Consensus 10 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (588)
T PRK11174 10 TRWLKQQSKPAKRWLNLSILLGFLSGLLLIAQAWLLATILQALIIENIP-REALLPPFILLILLFVLRALLAWLRERVGF 88 (588)
T ss_pred hHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5667778888889898999888888888888888888888865321111 111223444455556667778888889999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834 (1236)
Q Consensus 755 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~ 834 (1236)
..+.++..++|.++|++++++|.+||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++
T Consensus 89 ~~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~l~s~~~~dv~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 166 (588)
T PRK11174 89 KAGQHIRQQIRQQVLDKLQQLGPAWIQ--GKPAGSWATLVLEQVEDMHDFYARYLPQMALAVLVPLLILIAVFPINWAAG 166 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhc--cCCHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998 488999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 835 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
+++++.+|+.++...+..++.++..++..+..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+.....
T Consensus 167 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 246 (588)
T PRK11174 167 LILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGLETLRLFNRGEAETESIRSASEDFRQRTMEVLRMA 246 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888888888888888888899999999999999999999999999999999999888877777666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEV---------FRVFFALSMTAIGISQTSSLASDASKAKSSAASVF 985 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~ 985 (1236)
.....+...+..+..+++.+++++.+. |.+++|.+ +.+..+...+..|+..+...+..+.++..+++|+.
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~t~G~l~~~~~~~~~~~~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~ 325 (588)
T PRK11174 247 FLSSAVLEFFASISIALVAVYFGFSYL-GELNFGHYGTGVTLFAGFFVLILAPEFYQPLRDLGTFYHAKAQAVGAAESLV 325 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-cccccccccccchHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 666666555555555455455544433 67777654 22223444567889999999999999999999999
Q ss_pred HHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 986 GLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 986 ~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++++.+++.+.... ...+....++|+|+||+|.|+++ .++|+|+||+|+|||++|||||||||||||+++|+|+| |
T Consensus 326 ~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vsf~~~~~--~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p 401 (588)
T PRK11174 326 TFLETPLAHPQQGE-KELASNDPVTIEAEDLEILSPDG--KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-P 401 (588)
T ss_pred HHHcCCCcccCCCc-cccCCCCCceEEEEeeEEeccCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-C
Confidence 99987543221111 00111124579999999988643 46999999999999999999999999999999999999 9
Q ss_pred CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcC
Q 040099 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGE 1130 (1236)
Q Consensus 1066 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge 1130 (1236)
++|+|++||+|+++++.+++|++|+||||||+||+|||||||. +.+++++++.++|+||||.|||
T Consensus 402 ~~G~I~i~g~~i~~~~~~~lr~~i~~v~Q~~~LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~vge 481 (588)
T PRK11174 402 YQGSLKINGIELRELDPESWRKHLSWVGQNPQLPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTPIGD 481 (588)
T ss_pred CCcEEEECCEecccCCHHHHHhheEEecCCCcCCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhccccccccccc
Confidence 9999999999999999999999999999999999999999994 6789999999999999999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1131 RGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1131 ~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
+|.+||||||||||||||+++||+|||||||||+||++||+.|+++|++..+++|+|+||||++++++||+|+||++|+|
T Consensus 482 ~G~~LSGGQrQRialARAll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~~aD~Iivl~~G~i 561 (588)
T PRK11174 482 QAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLAQWDQIWVMQDGQI 561 (588)
T ss_pred CCCCCCHHHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHHhCCEEEEEeCCeE
Confidence 99999999999999999999999999999999999999999999999998889999999999999999999999999999
Q ss_pred EEecChhHHhhccCcccHHhhhccC
Q 040099 1211 VEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1211 ve~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|.|+|+||+++ +|.|++|++.|.
T Consensus 562 ~e~G~~~eL~~~-~~~y~~l~~~q~ 585 (588)
T PRK11174 562 VQQGDYAELSQA-GGLFATLLAHRQ 585 (588)
T ss_pred eecCCHHHHHhc-chHHHHHHHHhh
Confidence 999999999996 899999998774
|
|
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-82 Score=806.64 Aligned_cols=550 Identities=33% Similarity=0.479 Sum_probs=489.8
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.++.++.+..++++.++..+.....+++.+.+++....... .........+++++.++..++.+++.++
T Consensus 147 ~~~~~l~~~~~~~~~~l~~~~~~~~~~~l~~~~~p~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 224 (711)
T TIGR00958 147 DLLFRLLGLSGRDWPWLISAFVFLTLSSLGEMFIPFYTGRVIDTLGGDKG--PPALASAIFFMCLLSIASSVSAGLRGGS 224 (711)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667777778888888888888888888888888888888887643211 1112223344445556677788888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
+.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.+++.+...+..++..++.+++.+++++.++|.
T Consensus 225 ~~~~~~~~~~~lr~~l~~~ll~~~~~~f~--~~~~G~i~srl~~Di~~i~~~~~~~~~~~l~~~~~~i~~~~~l~~~s~~ 302 (711)
T TIGR00958 225 FNYTMARINLRIREDLFRSLLRQDLGFFD--ENKTGELTSRLSSDTQTMSRSLSLNVNVLLRNLVMLLGLLGFMLWLSPR 302 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 99999999999999999999999999998 4789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++..|+.+++..++.++.++..++.++..++..+.+.|+++|+++||+|+.|+++.++|.+..++..+...+...
T Consensus 303 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 382 (711)
T TIGR00958 303 LTMVTLINLPLVFLAEKVFGKRYQLLSEELQEAVAKANQVAEEALSGMRTVRSFAAEEGEASRFKEALEETLQLNKRKAL 382 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888888999999999999999999999999999999999999888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
...........+..+..++++++|++++..|.++.|+++++..+......++..+.....++.++..+.+|++++++.++
T Consensus 383 ~~~~~~~~~~~~~~~~~~~il~~g~~lv~~g~it~G~lva~~~~~~~l~~~l~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 462 (711)
T TIGR00958 383 AYAGYLWTTSVLGMLIQVLVLYYGGQLVLTGKVSSGNLVSFLLYQEQLGEAVRVLSYVYSGMMQAVGASEKVFEYLDRKP 462 (711)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 77776677777777788888999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.... ..+.+..+.|+|+||+|+||++++.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++
T Consensus 463 ~~~~~~~--~~~~~~~~~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i 540 (711)
T TIGR00958 463 NIPLTGT--LAPLNLEGLIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLL 540 (711)
T ss_pred CCCCCCC--CCCCCCCCeEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEE
Confidence 5432211 11223457899999999999766668999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+|+++++.+++|++|+||||||++|+|||||||. +.++++++++++|+||||.+||+|.+|||
T Consensus 541 dg~~i~~~~~~~lr~~i~~v~Q~~~lF~gTIreNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSG 620 (711)
T TIGR00958 541 DGVPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEEIMAAAKAANAHDFIMEFPNGYDTEVGEKGSQLSG 620 (711)
T ss_pred CCEEHHhcCHHHHHhhceEEecCccccccCHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCCCccCCcccCCCCcCCH
Confidence 999999999999999999999999999999999994 67889999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||||||||+++||+|||||||||+||+++|+.|++ ....+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 621 GQkQRlalARALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i~~aD~IivL~~G~ive~Gt~~ 698 (711)
T TIGR00958 621 GQKQRIAIARALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTVERADQILVLKKGSVVEMGTHK 698 (711)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHHHhCCEEEEEECCEEEEeeCHH
Confidence 99999999999999999999999999999999999999 3345789999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhh
Q 040099 1218 SLISTKNGIYTSLI 1231 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~ 1231 (1236)
||+++ +|.|++|+
T Consensus 699 eL~~~-~~~y~~lv 711 (711)
T TIGR00958 699 QLMED-QGCYKHLV 711 (711)
T ss_pred HHHhC-CCchHhcC
Confidence 99997 88999875
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-82 Score=788.40 Aligned_cols=571 Identities=35% Similarity=0.543 Sum_probs=504.6
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.++.+++|.+++++ .+.+.+++.++.+++....|++++.++|.+....+. ..+.....+++++.++..++.+++.
T Consensus 5 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (576)
T TIGR02204 5 PLAALWPFVRPYRG-RVLAALVALLITAAATLSLPYAVRLMIDHGFSKDSS----GLLNRYFAFLLVVALVLALGTAARF 79 (576)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcccccH----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566777776654 345566667777888888899999999974432121 1122223334444455667778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++...+++++..++|..+|++++++|.++|++. ++|++++|+++|++.+++++...+..++.+++.+++.++++++++|
T Consensus 80 ~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (576)
T TIGR02204 80 YLVTWLGERVVADIRRAVFAHLISLSPSFFDKN-RSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSP 158 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 899999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++.+|+++++..++.++.++..++.++..++..+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 159 ~l~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (576)
T TIGR02204 159 KLTSLVLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRI 238 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888999999999999999999999999999999999999999999999999999998888888887
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
........+..++..+..++++++|++++.+|.+|+|.++++..+......|+..+...+..++++..+.+|+.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~ 318 (576)
T TIGR02204 239 RTRALLTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAE 318 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 77777777776777777788889999999999999999999999999999999999999999999999999999999876
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.+..........+..+.|+++||+|+||+++++++|+|+||+++|||+++|+||||||||||+++|+|+|+|++|+|+
T Consensus 319 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~ 398 (576)
T TIGR02204 319 PDIKAPAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRIL 398 (576)
T ss_pred CcCCCCCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEE
Confidence 54322110111111224579999999999854336799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+||.|+++++.+++|++|+||||+|++|++||+|||.+++|+.++++++++++.+++++++.++|+|+||.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LS 478 (576)
T TIGR02204 399 LDGVDLRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLS 478 (576)
T ss_pred ECCEEHHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCC
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
||||||++||||++++|+|||||||||+||+++++.+.+.|+++.+++|+|+||||++.++.||+|++|++|++++.|+|
T Consensus 479 gGq~Qrl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~ 558 (576)
T TIGR02204 479 GGQRQRIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTH 558 (576)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred ccccccccchhhhhHHhh
Q 040099 606 SELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~~~~~ 623 (1236)
++++++ ++.|+++++.|
T Consensus 559 ~~l~~~-~~~~~~l~~~~ 575 (576)
T TIGR02204 559 AELIAK-GGLYARLARLQ 575 (576)
T ss_pred HHHHHc-CChHHHHHhhc
Confidence 999987 78999988654
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-81 Score=793.03 Aligned_cols=548 Identities=24% Similarity=0.336 Sum_probs=483.2
Q ss_pred hHHHhhh-cCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYL-NSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 675 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
+++++.. .++.++.+...++++++..+.....++++..+++....... ......+.+.++++.++..++.+++.+..
T Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 200 (686)
T TIGR03797 123 LRDLLRFALRGARRDLLAILAMGLLGTLLGMLVPIATGILIGTAIPDAD--RSLLVQIALALLAAAVGAAAFQLAQSLAV 200 (686)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344433 34566666666666666666666677777777776542211 11223344555566667778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
...+.++..++|.++|++++++|++||+ .+++|++++|++ |++.+++++...+...+......++.++++++++|.+
T Consensus 201 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~--~~~~g~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 277 (686)
T TIGR03797 201 LRLETRMDASLQAAVWDRLLRLPVSFFR--QYSTGDLASRAM-GISQIRRILSGSTLTTLLSGIFALLNLGLMFYYSWKL 277 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCChhHHHHHHh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 488999999997 7999999988887777777777788888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++++|+.+++..+..+..++..++..+..++..+.+.|+++|+++||+++.++++.++|.+..++..+...+....
T Consensus 278 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 357 (686)
T TIGR03797 278 ALVAVALALVAIAVTLVLGLLQVRKERRLLELSGKISGLTVQLINGISKLRVAGAENRAFARWAKLFSRQRKLELSAQRI 357 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999888888888888888888888888999999999999999999999999999999999999999988888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..+...+...+..+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++
T Consensus 358 ~~~~~~~~~~i~~~~~~~il~~g~~lv~~g~ltiG~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 437 (686)
T TIGR03797 358 ENLLTVFNAVLPVLTSAALFAAAISLLGGAGLSLGSFLAFNTAFGSFSGAVTQLSNTLISILAVIPLWERAKPILEALPE 437 (686)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999986654
Q ss_pred cCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+... ..++...|.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++|
T Consensus 438 ~~~~~---~~~~~~~~~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~id 513 (686)
T TIGR03797 438 VDEAK---TDPGKLSGAIEVDRVTFRYRPD-GPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYD 513 (686)
T ss_pred cccCc---CCCCCCCceEEEEEEEEEcCCC-CccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEEC
Confidence 32211 1122345789999999999754 3579999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhH
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ 1139 (1236)
|+|+++++++++|++|+||||||++|+|||||||. +.++++++++++|+||||.+||+|.+|||||
T Consensus 514 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~~~~~~~~e~i~~al~~a~l~~~i~~lp~G~dt~ige~G~~LSGGQ 593 (686)
T TIGR03797 514 GQDLAGLDVQAVRRQLGVVLQNGRLMSGSIFENIAGGAPLTLDEAWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGGQ 593 (686)
T ss_pred CEEcCcCCHHHHHhccEEEccCCccCcccHHHHHhcCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHH
Confidence 99999999999999999999999999999999994 6788999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
||||+||||++++|+|||||||||+||++||+.+++.|++. ++|+|+||||+++++.||+|+||++|+|+|.|+|+||
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~~~D~Iivl~~G~iv~~G~~~~L 671 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIRNADRIYVLDAGRVVQQGTYDEL 671 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999986 6899999999999999999999999999999999999
Q ss_pred hhccCcccHHhhhcc
Q 040099 1220 ISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1220 l~~~~g~y~~L~~~q 1234 (1236)
+++ +|.|++|++.|
T Consensus 672 l~~-~~~y~~l~~~q 685 (686)
T TIGR03797 672 MAR-EGLFAQLARRQ 685 (686)
T ss_pred HhC-CcHHHHHHHhc
Confidence 996 89999999876
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-80 Score=767.74 Aligned_cols=524 Identities=23% Similarity=0.300 Sum_probs=469.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-cccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIG-QNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIR 140 (1236)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR 140 (1236)
+.++++++++.+++.+..|+++++++|.+. ...+. ..+..+...+++++++..++.+++.++..+++.++..++|
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr 80 (529)
T TIGR02857 5 LALLGLLGALGALLIIAQAWLLARVIDGLISAGEPL----AELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLR 80 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCh----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666777778888889999999999863 32111 2233344455566677788899999999999999999999
Q ss_pred HHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040099 141 SFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVI 220 (1236)
Q Consensus 141 ~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~ 220 (1236)
.++|+|++++|..+|++. ++|++++|+++|++.+++++...+..++..++.+++.++++++++|.+++++++.+|+.++
T Consensus 81 ~~l~~~l~~~~~~~~~~~-~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 81 ERLLAAVAALGPGWLQGR-PSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHHhCCchhhccC-ChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999999998 9999999999999999999999999999999999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040099 221 AGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIF 300 (1236)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1236)
+..++.++.++..++.++..+++.+.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+.......+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999998888888887777777777777
Q ss_pred HHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCC
Q 040099 301 SAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDD 380 (1236)
Q Consensus 301 ~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 380 (1236)
+..++++.+|++.+.+|.+|+|.+++++.+......|+..+...+..++++..+++|+.++++.+++..+.. ..+ ..
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~--~~~-~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA--PVT-AA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc--CCC-CC
Confidence 777666677788888999999999999999988899999999999999999999999999998554322111 111 11
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh
Q 040099 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
..+.|+++||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999853 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 461 EKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
++|+||+|+|++|++||+|||.++.+++++++++++++.+++++|++++|+||||.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999999998889999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
+|+|+|||||||+||+++++.+.+.+.++.+++|+|+||||+++++.||+|++|
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-80 Score=792.05 Aligned_cols=550 Identities=25% Similarity=0.340 Sum_probs=483.9
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
.+++++.+.++.++.+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++.
T Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iiD~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (708)
T TIGR01193 143 SLLKFIPLITRQKKLIVNIVIAAIIVTLISIAGSYYLQKIIDTYIPHKM--MGTLGIISIGLIIAYIIQQILSYIQIFLL 220 (708)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3555666666677777766666777777777777788888876543211 11122333444455566778888899999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.++..++|.++|++++++|++||+ ++++|++++|++ |.+.+.+++...+...+..+..+++.++++++++|.+
T Consensus 221 ~~~~~~~~~~l~~~~~~~ll~l~~~~f~--~~~~G~~~~r~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 297 (708)
T TIGR01193 221 NVLGQRLSIDIILSYIKHLFELPMSFFS--TRRTGEIVSRFT-DASSIIDALASTILSLFLDMWILVIVGLFLVRQNMLL 297 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHhC--CCchhHHHHHhh-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999998 488999999998 8999999888887777778888888888889999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++.+|+++++.++..+..++..++..+..++..+.+.|+++|+++||+|+.++++.++|.+...+..+...+....
T Consensus 298 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 377 (708)
T TIGR01193 298 FLLSLLSIPVYAVIIILFKRTFNKLNHDAMQANAVLNSSIIEDLNGIETIKSLTSEAERYSKIDSEFGDYLNKSFKYQKA 377 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888899999999999999999999999999999999999998888888887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
......+..++..+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++
T Consensus 378 ~~~~~~~~~~~~~~~~i~il~~g~~lv~~g~ls~G~lva~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e 457 (708)
T TIGR01193 378 DQGQQAIKAVTKLILNVVILWTGAYLVMRGKLTLGQLITFNALLSYFLTPLENIINLQPKLQAARVANNRLNEVYLVDSE 457 (708)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 77777777777778888899999999999999999999999999999999999999999999999999999999987655
Q ss_pred cCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+..... ...+...|.|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 458 ~~~~~~~-~~~~~~~~~I~~~~vsf~y~~~--~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~id 534 (708)
T TIGR01193 458 FINKKKR-TELNNLNGDIVINDVSYSYGYG--SNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLN 534 (708)
T ss_pred ccccccc-cCCCCCCCcEEEEEEEEEcCCC--CcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEEC
Confidence 4322110 1123346789999999999743 469999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
|+|+++++.+++|++|+||||||+||+|||||||. +.+++++++.++|+||||.+||+|.+|||
T Consensus 535 g~~i~~~~~~~lr~~i~~v~Q~~~lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~i~e~G~~LSg 614 (708)
T TIGR01193 535 GFSLKDIDRHTLRQFINYLPQEPYIFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTELSEEGSSISG 614 (708)
T ss_pred CEEHHHcCHHHHHHheEEEecCceehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcEecCCCCCCCH
Confidence 99999999999999999999999999999999994 56788999999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
||||||+||||++++|+|||||||||+||++||+.+++.|++. +++|+|+||||+++++.||+|+||++|+++|.|+|+
T Consensus 615 GQrQRialARall~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~~~~D~i~~l~~G~i~~~G~~~ 693 (708)
T TIGR01193 615 GQKQRIALARALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVAKQSDKIIVLDHGKIIEQGSHD 693 (708)
T ss_pred HHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHHHcCCEEEEEECCEEEEECCHH
Confidence 9999999999999999999999999999999999999999985 789999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhc
Q 040099 1218 SLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~ 1233 (1236)
||+++ +|.|++|+++
T Consensus 694 ~L~~~-~~~y~~l~~~ 708 (708)
T TIGR01193 694 ELLDR-NGFYASLIHN 708 (708)
T ss_pred HHHhc-CCcHHHHhhC
Confidence 99996 8999999853
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-80 Score=701.03 Aligned_cols=555 Identities=23% Similarity=0.298 Sum_probs=471.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 59 SVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAAR 138 (1236)
Q Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 138 (1236)
+..+.++++++++..+....+..+-|++|..-.-. ..... -.+...+..+=++++.+.+..|...+..+....++..+
T Consensus 15 ~~~l~Lgi~l~~~t~lasigLl~lSGwfisasAia-g~~~~-f~~~~p~a~VR~~aI~Rt~~RY~ERlvsH~AtfrvL~~ 92 (573)
T COG4987 15 KFGLLLGIVLAILTLLASIGLLTLSGWFISASAIA-GLAYI-FNVMLPSAGVRGLAILRTAARYVERLVSHDATFRVLSA 92 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhc-cHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 33556666666655554444445567777642111 11001 11122233344667788899999999999999999999
Q ss_pred HHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH-HHH
Q 040099 139 IRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSS-IPP 217 (1236)
Q Consensus 139 lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~-~p~ 217 (1236)
+|.++|+++...+..-..+. ++||+++|++.|++.+++.+-..+.+.+..++...+..+.+-+++|.+++.+... +.+
T Consensus 93 lRv~~f~kl~p~sp~~~~r~-r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~~~~~~~~i~L~f~~~~~Alll~~~ll~~ 171 (573)
T COG4987 93 LRVRLFEKLEPLSPALLLRY-RSGDLLNRLVADVDALDNLYLRVIAPAVVALVLIAVVTIGLSFFSIPLALLLGLILLLL 171 (573)
T ss_pred HHHHHHHhhccCChHHHHhc-ChHhHHHHHHhhHHHHhhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999999999999999999999998888888888888999988765544 444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040099 218 LVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVF 297 (1236)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1236)
.+++...+.++.++..++..+..+.+.+.+.|.+.|....+.||+++.+.+.+.+.-..+.+...|..++..+...+..+
T Consensus 172 lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~l~~~e~~~~~~q~k~~~~~~~~~a~~~l 251 (573)
T COG4987 172 LLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTALEATEASWLKAQRKQARFTGLSDAILLL 251 (573)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55677888888999999999999999999999999999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhccCCCccccccCCC
Q 040099 298 IIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQAS-PCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGK 376 (1236)
Q Consensus 298 ~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~ 376 (1236)
+..+..+..+.+.+..+-.|..+......+++.++..+.++..+. ..+....+...|+.|+.++++.+|+...+. + .
T Consensus 252 ~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~lgq~~~Sa~Rl~~i~~q~~e~~~~~-~-~ 329 (573)
T COG4987 252 IAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHLGQVIASARRLNDILDQKPEVTFPD-E-Q 329 (573)
T ss_pred HHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHhhHHHHHHHHHhhhccCCcccCCCc-c-c
Confidence 777776634444444566777764444444444444455555555 556788999999999999999988765431 1 1
Q ss_pred CCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH
Q 040099 377 KLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL 456 (1236)
Q Consensus 377 ~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~ 456 (1236)
.+.....++++||||+||+. +.++|+|+||++++||++||+|+||||||||+++|.|-|+|++|+|.++|.++..++.
T Consensus 330 -~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~ 407 (573)
T COG4987 330 -TATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE 407 (573)
T ss_pred -cCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh
Confidence 11112279999999999964 4689999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+.+|+.|++++|.++||++|+|||+.+++|++++|+++++++++++++++.+.|+||+|.+||.|..||||||||+||||
T Consensus 408 ~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~rRLAlAR 487 (573)
T COG4987 408 QALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGERRRLALAR 487 (573)
T ss_pred hhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchh
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
+|++|+|++||||||.+||+.||+++++.|.+..+|||+|+||||+..++.||||+||++|+++|+|+|.+|+++ +|.|
T Consensus 488 ~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~drIivl~~Gkiie~G~~~~Ll~~-~g~~ 566 (573)
T COG4987 488 ALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERMDRIIVLDNGKIIEEGTHAELLAN-NGRY 566 (573)
T ss_pred HHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhcCEEEEEECCeeeecCCHHhhhcc-ccHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999997 8999
Q ss_pred hhhHH
Q 040099 617 NRLIR 621 (1236)
Q Consensus 617 ~~~~~ 621 (1236)
+++++
T Consensus 567 ~~l~q 571 (573)
T COG4987 567 KRLYQ 571 (573)
T ss_pred HHHhc
Confidence 99875
|
|
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.6e-80 Score=765.76 Aligned_cols=550 Identities=23% Similarity=0.287 Sum_probs=473.4
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhH-HhhhHHH-HHHHHHHHHHHHHHHHHHHHHHH
Q 040099 676 SRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEE-LMRHSKH-WALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
++++++.+++++.++++++++++...+....+++++++++........ ....... +...+.+++++..++.++..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (574)
T PRK11160 5 LPFLKLYKRHWFMLSLGILLAIVTLLASIGLLTLSGWFLSASAVAGLAGLYSFNYMLPAAGVRGAAIGRTAGRYGERLVS 84 (574)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556677777777887777777777777777777777754211110 0000011 12233345556777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
...+.+...++|.++|++++++|.+||+ ++++|++++|+++|++.++.++...+..++.+++.+++.++++++++|.+
T Consensus 85 ~~~~~~~~~~lR~~l~~~l~~~~~~~~~--~~~~g~~~srl~~Dv~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 162 (574)
T PRK11160 85 HDATFRVLTHLRVFTFSKLLPLSPAGLA--RYRQGDLLNRLVADVDTLDHLYLRLISPLVAALVVILVLTIGLSFFDLTL 162 (574)
T ss_pred HHHHHHHHHHHHHHHHHHhhccChHhhc--cCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGI-TGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 834 ~lv~l~~~pl~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
++++++.+|++++ ..++..+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+...
T Consensus 163 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 242 (574)
T PRK11160 163 ALTLGGILLLLLLLLPLLFYRLGKKPGQDLTHLRAQYRVQLTEWLQGQAELTLFGAEDRYRQQLEQTEQQWLAAQRRQAN 242 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999888887655 446666777777788888888999999999999999999999999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSM-TAIGISQTSSLASDASKAKSSAASVFGLIDQV 991 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~ 991 (1236)
..+....+..++..+..++++++|++++ .|.++.|.+++++.+..+ ...++..+...+..+.++..+++|+.++++.+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~i~~~g~~~~-~g~~t~g~l~a~~~~~~~~~~~~~~~l~~~~~~~~~~~~s~~ri~~ll~~~ 321 (574)
T PRK11160 243 LTGLSQALMILANGLTVVLMLWLAAGGV-GGNAQPGALIALFVFAALAAFEALMPVAGAFQHLGQVIASARRINEITEQK 321 (574)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-ccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 8888888888888888888899999885 788999998887766544 44577788888999999999999999999876
Q ss_pred cccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEE
Q 040099 992 SKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071 (1236)
Q Consensus 992 ~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~ 1071 (1236)
++.+..+. .......+.|+|+||+|+|++. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|+
T Consensus 322 ~~~~~~~~--~~~~~~~~~i~~~~v~f~y~~~-~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~ 398 (574)
T PRK11160 322 PEVTFPTT--STAAADQVSLTLNNVSFTYPDQ-PQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398 (574)
T ss_pred CCCCCCcc--cCCCCCCCeEEEEEEEEECCCC-CCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEE
Confidence 54322111 1112235689999999999854 24699999999999999999999999999999999999999999999
Q ss_pred ECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCC
Q 040099 1072 LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLS 1136 (1236)
Q Consensus 1072 idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LS 1136 (1236)
+||+|+++++.+++|++|+||||||+||++||+|||. +.+++++++++ |+||||.+||+|.+||
T Consensus 399 i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~al~~~~l~~~i~~-p~GldT~vge~g~~LS 477 (574)
T PRK11160 399 LNGQPIADYSEAALRQAISVVSQRVHLFSATLRDNLLLAAPNASDEALIEVLQQVGLEKLLED-DKGLNAWLGEGGRQLS 477 (574)
T ss_pred ECCEEhhhCCHHHHHhheeEEcccchhhcccHHHHhhcCCCccCHHHHHHHHHHcCCHHHHcC-ccccCchhcCCCCCCC
Confidence 9999999999999999999999999999999999994 67889999999 9999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
||||||||||||++++|+|||||||||+||++||+.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|
T Consensus 478 gGqrqRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~~~d~i~~l~~G~i~~~g~~ 557 (574)
T PRK11160 478 GGEQRRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQFDRICVMDNGQIIEQGTH 557 (574)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHHhCCEEEEEeCCeEEEeCCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhccCcccHHhhhc
Q 040099 1217 ESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1217 ~eLl~~~~g~y~~L~~~ 1233 (1236)
+||+++ +|.|++|++.
T Consensus 558 ~~l~~~-~g~y~~l~~~ 573 (574)
T PRK11160 558 QELLAQ-QGRYYQLKQR 573 (574)
T ss_pred HHHHhc-CcHHHHHHhh
Confidence 999997 9999999863
|
|
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-80 Score=789.24 Aligned_cols=549 Identities=24% Similarity=0.313 Sum_probs=481.6
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
.+++++...+++++.+...++++++..+.....+++...+++....... ......+...++++.++..++.+++.++.
T Consensus 141 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~p~~~~~iid~v~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (710)
T TIGR03796 141 LLRALWRRLRGSRGALLYLLLAGLLLVLPGLVIPAFSQIFVDEILVQGR--QDWLRPLLLGMGLTALLQGVLTWLQLYYL 218 (710)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555666666666666666666666666777777765432211 11122334445555666778888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
...+.++..++|.++|++++++|++||+ ++++|++++|+++| +.+++++...+..++..++.+++.++++++++|.+
T Consensus 219 ~~~~~~~~~~l~~~~~~~ll~l~~~~~~--~~~~g~~~~r~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l 295 (710)
T TIGR03796 219 RRLQIKLAVGMSARFLWHILRLPVRFFA--QRHAGDIASRVQLN-DQVAEFLSGQLATTALDAVMLVFYALLMLLYDPVL 295 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHc--CCcccHHHHHhhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999998 48899999999988 68999998888888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++.+|+.+++..+..+...+..++..+...+..+.+.|+++|+++||+++.++.+.++|.+...+..+...+....
T Consensus 296 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 375 (710)
T TIGR03796 296 TLIGIAFAAINVLALQLVSRRRVDANRRLQQDAGKLTGVAISGLQSIETLKASGLESDFFSRWAGYQAKLLNAQQELGVL 375 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888878888888888999999999999999999999999999999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..+...+..++..+..++++++|++++..|.+++|.++++..+...+..|+..+...+..+..+..+.+|+.++++.+++
T Consensus 376 ~~~~~~~~~~i~~~~~~~il~~g~~~v~~g~lt~G~lva~~~l~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e 455 (710)
T TIGR03796 376 TQILGVLPTLLTSLNSALILVVGGLRVMEGQLTIGMLVAFQSLMSSFLEPVNNLVGFGGTLQELEGDLNRLDDVLRNPVD 455 (710)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888888899999999999999999999999999999999999999999999999999999999999987655
Q ss_pred cCCCcc---c-cCcc-CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 040099 994 IDSSEY---T-GRTL-ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068 (1236)
Q Consensus 994 ~~~~~~---~-~~~~-~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G 1068 (1236)
.+.... . ...+ +...|.|+|+||+|+|++. ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|
T Consensus 456 ~~~~~~~~~~~~~~~~~~~~~~I~~~~vsf~y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G 534 (710)
T TIGR03796 456 PLLEEEEAPAAGSEPSPRLSGYVELRNITFGYSPL-EPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSG 534 (710)
T ss_pred cccccccccccccccCCCCCCeEEEEEEEEecCCC-CCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCc
Confidence 432210 0 0111 2345789999999999854 34699999999999999999999999999999999999999999
Q ss_pred EEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCC
Q 040099 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGV 1133 (1236)
Q Consensus 1069 ~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~ 1133 (1236)
+|++||+|+++++.+++|++|+||||||++|+|||||||. +.+++++++.++|+||||.+||+|.
T Consensus 535 ~I~idg~~i~~~~~~~lr~~i~~v~Q~~~lf~gTi~eNi~l~~~~~~~~~i~~al~~~~l~~~i~~lp~gl~t~i~e~G~ 614 (710)
T TIGR03796 535 EILFDGIPREEIPREVLANSVAMVDQDIFLFEGTVRDNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYDAELAEGGA 614 (710)
T ss_pred EEEECCEeHHHCCHHHHHhheeEEecCChhhhccHHHHhhCCCCCCCHHHHHHHHHHhCCHHHHHhCcCcccceeccCCC
Confidence 9999999999999999999999999999999999999994 6788999999999999999999999
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 040099 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~ 1213 (1236)
+||||||||||||||++++|+|||||||||+||++||+.+.+.|++ .++|+|+||||+++++.||+|+||++|+|+|.
T Consensus 615 ~LSGGQrQRiaLARall~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~~~D~Iivl~~G~i~~~ 692 (710)
T TIGR03796 615 NLSGGQRQRLEIARALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIRDCDEIIVLERGKVVQR 692 (710)
T ss_pred CCCHHHHHHHHHHHHHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHHhCCEEEEEeCCEEEEe
Confidence 9999999999999999999999999999999999999999999987 48999999999999999999999999999999
Q ss_pred cChhHHhhccCcccHHhh
Q 040099 1214 GSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1214 Gt~~eLl~~~~g~y~~L~ 1231 (1236)
|+|+||+++ +|.|++|+
T Consensus 693 G~~~~Ll~~-~~~y~~l~ 709 (710)
T TIGR03796 693 GTHEELWAV-GGAYARLI 709 (710)
T ss_pred cCHHHHHHc-CCcHHHHh
Confidence 999999996 89999987
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-80 Score=829.90 Aligned_cols=567 Identities=20% Similarity=0.252 Sum_probs=471.0
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+..++.|++...+...++.+++.++..++..+.++.++...|......+. .....+...+++++++..++.++.
T Consensus 950 v~~~~y~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~w~~~~~~~~~~----~~~~~~~~iy~~l~i~~~~~~~~~ 1025 (1522)
T TIGR00957 950 VELSVYWDYMKAIGLFITFLSIFLFVCNHVSALASNYWLSLWTDDPMVNGTQ----NNTSLRLSVYGALGILQGFAVFGY 1025 (1522)
T ss_pred ccHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC----CCcchHHHHHHHHHHHHHHHHHHH
Confidence 3455555666543222222222233333344445556667666642111010 001112234555666777788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++....+.+...++|.++|++++++|++||+++ ++|++++|+++|++.+++.+...+..++..++.+++.++++++.+
T Consensus 1026 ~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~li~~~~~~ 1104 (1522)
T TIGR00957 1026 SMAVSIGGIQASRVLHQDLLHNKLRSPMSFFERT-PSGNLVNRFSKELDTVDSMIPPVIKMFMGSLFNVIGALIVILLAT 1104 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCChhHhccC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888899999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.++++++.++++++++..++.+..++..+...+..+.+.+.+.|+++|+++||+|++|+.+.+++.+..+...+.....
T Consensus 1105 ~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~l~~~~~E~l~Gi~tIraf~~~~~f~~~~~~~~~~~~~~~~~~ 1184 (1522)
T TIGR00957 1105 PIAAVIIPPLGLLYFFVQRFYVASSRQLKRLESVSRSPVYSHFNETLLGVSVIRAFEEQERFIHQSDLKVDENQKAYYPS 1184 (1522)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhCCcHHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 98877777666766677777777777777778888899999999999999999999999999999988888777776655
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH-hcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLIL-EKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~-~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
.....+......++.. +++++.|+..+. .|.+++|.+.+++.|++....|+..+...+..++++.+|.+|+.++++
T Consensus 1185 ~~~~~~~~~~~~~~~~---~~~~~~~~~~v~~~~~~~~g~l~~~l~~~~~~~~~l~~l~~~~~~~e~~~~s~eRi~~~~~ 1261 (1522)
T TIGR00957 1185 IVANRWLAVRLECVGN---CIVLFAALFAVISRHSLSAGLVGLSVSYSLQVTFYLNWLVRMSSEMETNIVAVERLKEYSE 1261 (1522)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 5555555544444332 234445555554 588999999999999999999999999999999999999999999998
Q ss_pred cCCCccccccCCCCC--CCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 040099 364 RKPEIDLCCVNGKKL--DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 441 (1236)
.+++.+.......++ .+.+|.|+|+||+|+|+++ .+++|+||||+|+|||++||||+||||||||+++|.|+|+|++
T Consensus 1262 ~~~e~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~ 1340 (1522)
T TIGR00957 1262 TEKEAPWQIQETAPPSGWPPRGRVEFRNYCLRYRED-LDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAE 1340 (1522)
T ss_pred CCCCccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCC
Confidence 776643111111111 1346789999999999753 2479999999999999999999999999999999999999999
Q ss_pred cEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCC
Q 040099 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG 521 (1236)
Q Consensus 442 G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g 521 (1236)
|+|++||+|+++++.+++|++|+||||||+||+|||||||.... +++++++++|++.+++++++.++|+||||.+||+|
T Consensus 1341 G~I~IdG~dI~~i~~~~LR~~i~iVpQdp~LF~gTIr~NLdp~~-~~sdeei~~al~~a~l~~~I~~lp~GLdt~v~e~G 1419 (1522)
T TIGR00957 1341 GEIIIDGLNIAKIGLHDLRFKITIIPQDPVLFSGSLRMNLDPFS-QYSDEEVWWALELAHLKTFVSALPDKLDHECAEGG 1419 (1522)
T ss_pred CeEEECCEEccccCHHHHHhcCeEECCCCcccCccHHHHcCccc-CCCHHHHHHHHHHcCcHHHHhhCccCCCceecCCC
Confidence 99999999999999999999999999999999999999998432 57999999999999999999999999999999999
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEE
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~ 601 (1236)
.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++|+|+||||++++.+||||+||++|+|+|
T Consensus 1420 ~~LSgGQrQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~~~DrIlVld~G~IvE 1499 (1522)
T TIGR00957 1420 ENLSVGQRQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIMDYTRVIVLDKGEVAE 1499 (1522)
T ss_pred CcCCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999999888999999999999999999999999999999
Q ss_pred EeCcccccccccchhhhhHHh
Q 040099 602 KGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 602 ~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
.|+|+||+++ ++.|+++++.
T Consensus 1500 ~G~~~eLl~~-~~~f~~l~~~ 1519 (1522)
T TIGR00957 1500 FGAPSNLLQQ-RGIFYSMAKD 1519 (1522)
T ss_pred ECCHHHHHhC-CCHHHHHHHH
Confidence 9999999988 7999999864
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-79 Score=708.94 Aligned_cols=536 Identities=26% Similarity=0.363 Sum_probs=476.3
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 692 GAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEK 771 (1236)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 771 (1236)
..+.+.+.++....+.++++..+..+..... ......++..++++.+...++.+.+......++.++-..+|..++++
T Consensus 5 ~~ll~~l~~i~~i~qa~llA~~l~~l~~~~~--~~~l~~~~~~l~~~~~lRa~l~~~~~~~~~~aa~~~~~~LR~~~l~~ 82 (559)
T COG4988 5 SALLAVLSGIAIIAQAALLADILTKLIEGQL--FQSLLPLLILLLIALVLRAFLAWLRERLGYRAAAKVRASLRQLVLDK 82 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445556666666777777777766543221 23334455666666777788888888888999999999999999999
Q ss_pred HhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040099 772 VVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQ 851 (1236)
Q Consensus 772 ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~ 851 (1236)
+.+.+..|-. ..++|+..+.+...++.++.++...++.+.......+..++..++.+|.-+++++.+.|++.++.++.
T Consensus 83 l~~~gp~~~~--~~~~g~~atl~~egve~l~~Y~~ryLPq~~~~~ivp~~i~i~v~~~~w~aalIllit~PlIPlfMilv 160 (559)
T COG4988 83 LAKLGPAFIA--QKPAGSAATLALEGIEQLEPYYARYLPQMFLSAIVPLLILIAIFFFNWAAALILLITAPLIPLFMILV 160 (559)
T ss_pred HHhCChhhhc--CCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999987 47899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 852 MKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAV 931 (1236)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1236)
....++.+++.-..+...++++.|.++|+.|+|.|+..++..++..+...+..+..++..++.-...++..++.+++.++
T Consensus 161 g~~a~~~s~~~~~~~~~ls~~FLD~LrGL~TLr~f~~~~~~~~~i~~~se~fR~~TM~vLriAflSs~vLeffa~lsiAl 240 (559)
T COG4988 161 GLAAKDASEKQFSALARLSGHFLDRLRGLETLRAFGRTEATEERIRKDSEDFRKATMSVLRIAFLSSAVLEFFAYLSIAL 240 (559)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999888888889999999999999999999999999999999999999999999998888888888888888888887
Q ss_pred HHHHHHHHHhh-cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCcccc
Q 040099 932 TFYVGAKLVDH-KQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGE 1010 (1236)
Q Consensus 932 ~~~~g~~lv~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1010 (1236)
+..+.+..... |.+++...+.++....-.+.|+..+.+.++....+..+++.++.+.+.+.+................+
T Consensus 241 vAv~~g~~ll~~G~ltl~~~l~~LiLAPEff~PlR~lGs~fH~~~~g~aa~d~i~~~l~~~~~~~~~~~~~~~~~~~~~e 320 (559)
T COG4988 241 VAVYIGFRLLGEGDLTLFAGLFVLILAPEFFQPLRDLGSFFHAAAAGEAAADKLFTLLESPVATPGSGEKAEVANEPPIE 320 (559)
T ss_pred HHHHHHHHHHccCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHhcCCCCCCCCccccccccCCCce
Confidence 66555544444 89999998888888889999999999999999999999999999998776544332211111122345
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++.+|++|+||+.+ ++++|+||+++|||++||||+||||||||+++|+||++|++|+|++||+|.++++.+.||++++
T Consensus 321 i~~~~l~~~y~~g~--~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~~~~~k~i~ 398 (559)
T COG4988 321 ISLENLSFRYPDGK--PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSPEAWRKQIS 398 (559)
T ss_pred eeecceEEecCCCC--cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCHHHHHhHee
Confidence 66779999999753 7999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+|||+|+||+|||||||. +.+++.+|+.. |+|+||++||+|.+|||||+||+++|||+++++++
T Consensus 399 ~v~Q~p~lf~gTireNi~l~~~~~s~e~i~~al~~a~l~~~v~~-p~GLdt~ige~G~~LSgGQ~QRlaLARAll~~~~l 477 (559)
T COG4988 399 WVSQNPYLFAGTIRENILLARPDASDEEIIAALDQAGLLEFVPK-PDGLDTVIGEGGAGLSGGQAQRLALARALLSPASL 477 (559)
T ss_pred eeCCCCccccccHHHHhhccCCcCCHHHHHHHHHHhcHHHhhcC-CCcccchhccCCCCCCHHHHHHHHHHHHhcCCCCE
Confidence 999999999999999994 67888999999 99999999999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|+|||||+||.+||+.|++.|.++++++|||+||||++.+++||+|+|||+|+++|.|+|++|.++ +|.|++|+..|.
T Consensus 478 ~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~~~D~I~vld~G~l~~~g~~~~L~~~-~~~y~~l~~~q~ 556 (559)
T COG4988 478 LLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAADADRIVVLDNGRLVEQGTHEELSEK-QGLYANLLKQQE 556 (559)
T ss_pred EEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHhcCCEEEEecCCceeccCCHHHHhhc-CcHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999999999999999999997 999999998764
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-79 Score=754.92 Aligned_cols=533 Identities=21% Similarity=0.276 Sum_probs=468.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 62 MLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRS 141 (1236)
Q Consensus 62 ~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~ 141 (1236)
++..++++++..++....|+++++++|.+....+. ..+..+...++++.++..++.+++.++..+.+.++..++|.
T Consensus 8 ~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 83 (544)
T TIGR01842 8 FIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGSV----PTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGALNQ 83 (544)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555566666677777888999999976532121 22333344445555667788899999999999999999999
Q ss_pred HHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040099 142 FYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGE-KVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVI 220 (1236)
Q Consensus 142 ~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~ 220 (1236)
++|+|++++|+. ..++..+++++|++.+++++.. .+..++..++.++ .++++++++|.+++++++.+|++++
T Consensus 84 ~~~~~ll~~~~~------~~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l~~~ 156 (544)
T TIGR01842 84 PIFAASFSATLR------RGKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVVLVG 156 (544)
T ss_pred HHHHHHhcCccc------CccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 999999999983 3466789999999999999877 4555555555444 4567899999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040099 221 AGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIF 300 (1236)
Q Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (1236)
+..++.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..+..+....+..++..
T Consensus 157 i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (544)
T TIGR01842 157 LALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKYFRI 236 (544)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888899999999999999999999999999999999999999999999998888888888887777777777
Q ss_pred HHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCC
Q 040099 301 SAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDD 380 (1236)
Q Consensus 301 ~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~ 380 (1236)
+..++++++|++++.+|.+|+|++++++.++.....|+..+...+..++++.++.+|+.++++.+++.+.. ...+.
T Consensus 237 ~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~~~~ 312 (544)
T TIGR01842 237 VLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MPLPE 312 (544)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CCCCC
Confidence 78888899999999999999999999999999999999999999999999999999999999876553211 11222
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh
Q 040099 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
..+.++++||+|+|+++ ++++|+|+||+++|||+++||||||||||||+++|+|+|+|++|+|.+||+++++++.+++|
T Consensus 313 ~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~~~~ 391 (544)
T TIGR01842 313 PEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRETFG 391 (544)
T ss_pred CCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHHHHh
Confidence 34679999999999743 35799999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 461 EKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
++++||||+|++|++|++|||.++.+++++++++++++.++++++++++|+|+||.+||+|.+||||||||++||||+++
T Consensus 392 ~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARall~ 471 (544)
T TIGR01842 392 KHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARALYG 471 (544)
T ss_pred hheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998877789999999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|++||||||||+||+++++.+.+.|.++. +++|+|+||||++.++.||+|++|++|++++.|+|+++++
T Consensus 472 ~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~ 542 (544)
T TIGR01842 472 DPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLA 542 (544)
T ss_pred CCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhh
Confidence 999999999999999999999999999885 5899999999999999999999999999999999999875
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-82 Score=697.10 Aligned_cols=487 Identities=31% Similarity=0.416 Sum_probs=418.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 742 SLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVV 821 (1236)
Q Consensus 742 ~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~ 821 (1236)
++++..++.|+...+.....+++-.++|+|+..+++.|+- .+.+|+++.-+.+..+.+. ++...+..+...+.-+.+
T Consensus 272 sG~~~nlRtfLWi~VqQyttR~ie~~lfrHlh~LSlrwHL--~rrtGeVLrvmdrGtssvt-ll~yvVF~i~PtllDl~v 348 (790)
T KOG0056|consen 272 SGFLNNLRTFLWIPVQQYTTREIETELFRHLHNLSLRWHL--NRRTGEVLRVMDRGTSSVT-LLEYVVFQIGPTLLDLGV 348 (790)
T ss_pred ccchhhhheeEEEEhhHhHHHHHHHHHHHHHHhhceeeee--cccccceeehhccCcchhh-HHHHHHhhcccHHHHhhh
Confidence 3566777888888889999999999999999999999987 4779998887777766665 444444444444444444
Q ss_pred HHHH-HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHH
Q 040099 822 GLVI-AFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKC 900 (1236)
Q Consensus 822 ~~ii-~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~ 900 (1236)
+.+. ....+|+++++++.+..+.........-...++.++......+..+.-.|++-|.+|||-|++|++..++|.+..
T Consensus 349 a~vYF~~~Fn~wFgLIVfl~m~lY~~~Ti~iTeWRTk~rR~Mn~~~nesrAr~vDsllNFETVKyy~Ae~yEverYreAi 428 (790)
T KOG0056|consen 349 AMVYFFIKFNIWFGLIVFLMMLLYCYVTIKITEWRTKARRKMNNSWNESRARQVDSLLNFETVKYYNAEDYEVERYREAI 428 (790)
T ss_pred hhhhhhhhHhHHHHHHHHHHHHHHhheeeeeehhhHHHHHHhhhhhhhhhhhhhhhhhcchhhhccCchhhhHHHHHHHH
Confidence 4443 345789999988887777665544443344445666777777788888999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 901 EGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSS 980 (1236)
Q Consensus 901 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a 980 (1236)
.++++..++...--.+.......+..++.+....+.++.|..+..++|+.+.+..++....+|+.....+...+++....
T Consensus 429 l~Yqk~E~ks~~sLnfLN~~Qn~Ii~lgll~gsll~aY~Vt~q~ltVGDfVlf~TYliqLy~PLN~FGT~YR~iQ~nfiD 508 (790)
T KOG0056|consen 429 LKYQKQEWKSLASLNFLNIVQNGIIGLGLLAGSLLCAYRVTEQTLTVGDFVLFLTYLIQLYMPLNFFGTYYRSIQKNFID 508 (790)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHhhhhheeeeeeeeccccccceehHHHHHHHHhCchHHHHHHHHHHHHhhhh
Confidence 99998877765544444444445555555555566677788899999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 981 AASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 981 ~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
+++++++++++++..+.+ ...+....+|.|+|+||+|.|.+ .+|+|+||||+++||+++|+|||||+||||++++|+
T Consensus 509 mEnmfdllkee~eVvd~P-~a~pl~~~~G~i~fsnvtF~Y~p--~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLf 585 (790)
T KOG0056|consen 509 MENMFDLLKEEPEVVDLP-GAPPLKVTQGKIEFSNVTFAYDP--GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLF 585 (790)
T ss_pred HHHHHHHhhcCchhhcCC-CCCCccccCCeEEEEEeEEecCC--CCceeecceEEecCCcEEEEECCCCCchhHHHHHHH
Confidence 999999998877664322 22233446799999999999974 568999999999999999999999999999999999
Q ss_pred cccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchh
Q 040099 1061 RFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYD 1125 (1236)
Q Consensus 1061 r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gld 1125 (1236)
||||.++|+|+|||+||+.+..++||++||+||||.+||++||.+||. +.|++||-|.++|+||+
T Consensus 586 Rffdv~sGsI~iDgqdIrnvt~~SLRs~IGVVPQDtvLFNdTI~yNIryak~~AsneevyaAAkAA~IHdrIl~fPegY~ 665 (790)
T KOG0056|consen 586 RFFDVNSGSITIDGQDIRNVTQSSLRSSIGVVPQDTVLFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRILQFPEGYN 665 (790)
T ss_pred HHhhccCceEEEcCchHHHHHHHHHHHhcCcccCcceeecceeeeheeecCCCCChHHHHHHHHHhhHHHHHhcCchhhh
Confidence 999999999999999999999999999999999999999999999994 78899999999999999
Q ss_pred hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1126 TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1126 t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
|.|||+|..||||||||+||||++|++|.|++|||||||||..||++||.+|.+.+.+||.|+|||||+|+-+||.|+|+
T Consensus 666 t~VGERGLkLSGGEKQRVAiARtiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTivnAD~ILvi 745 (790)
T KOG0056|consen 666 TRVGERGLKLSGGEKQRVAIARTILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIVNADLILVI 745 (790)
T ss_pred hhhhhcccccCCcchhhHHHHHHHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehheecccEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1206 SQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1206 ~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
++|+|+|.|+|+||+++.+|.|+.||+.|
T Consensus 746 ~~G~IvErG~HeeLl~rdgG~Ya~MWq~q 774 (790)
T KOG0056|consen 746 SNGRIVERGRHEELLKRDGGAYADMWQAQ 774 (790)
T ss_pred eCCeEeecCcHHHHHhccCCcHHHHHHHH
Confidence 99999999999999999899999999755
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-79 Score=774.71 Aligned_cols=540 Identities=25% Similarity=0.374 Sum_probs=475.0
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 754 (1236)
+++++.+.++.++.+...++++++..++....++++..+++....... ......+...++++.++..++.+++.++..
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~p~~~~~iiD~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (694)
T TIGR03375 135 KHWFWSTLKESWPLYRDVLIASLLINLLALASPLFVMNVYDRVVPNQA--FETLWVLAIGVALAIVFDFVLKTLRSYFLD 212 (694)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCc--HhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555666666666666666666666677777777776542211 111222333444455567788889999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834 (1236)
Q Consensus 755 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~ 834 (1236)
+.+.++..++|.++|++++++|++| + ++++|++++|+ +|++.+++++...+...+..+..+++.++++++++|.++
T Consensus 213 ~~~~~~~~~l~~~~~~~ll~l~~~~-~--~~~~G~~~~r~-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 288 (694)
T TIGR03375 213 VAGKKADLILSAKLFERVLGLRMEA-R--PASVGSFANQL-REFESVRDFFTSATLTALIDLPFALLFLLVIAIIGGPLV 288 (694)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccc-C--CCChhHHHHHH-HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999998 4 47899999999 899999999988888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 835 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
+++++.+|+.+++.++..++.++..++..+..++..+.+.|+++|+++||+|+.++++.++|.+..++..+...+.....
T Consensus 289 li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (694)
T TIGR03375 289 WVPLVAIPLILLPGLLLQRPLSRLAEESMRESAQRNAVLVESLSGLETIKALNAEGRFQRRWEQTVAALARSGLKSRFLS 368 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888999999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
.....+...+..++.++++++|++++..|.+|+|+++++..+...+..|+..+...+.++..+..+.+|+.++++.+++.
T Consensus 369 ~~~~~~~~~~~~~~~~~il~~g~~~v~~g~ls~G~l~a~~~~~~~~~~p~~~l~~~~~~~~~~~~~~~ri~~il~~~~e~ 448 (694)
T TIGR03375 369 NLATNFAQFIQQLVSVAIVVVGVYLISDGELTMGGLIACVMLSGRALAPLGQLAGLLTRYQQAKTALQSLDELMQLPVER 448 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC
Confidence 88888888888888889999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 995 ~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
+.... ....+...|.|+|+||+|+|++. +.++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 449 ~~~~~-~~~~~~~~~~I~~~~vsf~Y~~~-~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg 526 (694)
T TIGR03375 449 PEGTR-FLHRPRLQGEIEFRNVSFAYPGQ-ETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDG 526 (694)
T ss_pred CCCCC-CCCCCCccceEEEEEEEEEeCCC-CccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 22111 11122345789999999999854 34699999999999999999999999999999999999999999999999
Q ss_pred eecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhH
Q 040099 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1075 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ 1139 (1236)
+|+++++++++|++|+||||||++|+|||+|||. +.+++++++.++|+||||.+||+|.+|||||
T Consensus 527 ~~l~~~~~~~lr~~i~~v~Q~~~lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~i~e~G~~LSgGQ 606 (694)
T TIGR03375 527 VDIRQIDPADLRRNIGYVPQDPRLFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQ 606 (694)
T ss_pred EEhhhCCHHHHHhccEEECCChhhhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccceecCCCCCCCHHH
Confidence 9999999999999999999999999999999994 6688999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
||||+||||++++|+|||||||||+||++||+.|++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+||
T Consensus 607 rQRlalARall~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~~~~D~iivl~~G~i~e~G~~~eL 686 (694)
T TIGR03375 607 RQAVALARALLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLLDLVDRIIVMDNGRIVADGPKDQV 686 (694)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeCCEEEeeCCHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred hhc
Q 040099 1220 IST 1222 (1236)
Q Consensus 1220 l~~ 1222 (1236)
+++
T Consensus 687 l~~ 689 (694)
T TIGR03375 687 LEA 689 (694)
T ss_pred HHH
Confidence 886
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-79 Score=761.33 Aligned_cols=550 Identities=33% Similarity=0.502 Sum_probs=478.3
Q ss_pred HHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 677 RLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVA 756 (1236)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 756 (1236)
+++.+.++.++.++..+++.++..++....++++..+++....... ......+...++++.++..++.+++.++..+.
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 92 (582)
T PRK11176 15 RLWPTIAPFKAGLIVAGVALILNAASDTFMLSLLKPLLDDGFGKAD--RSVLKWMPLVVIGLMILRGITSFISSYCISWV 92 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555555555555555666666654432111 11111122333445666777788888888899
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040099 757 GCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALL 836 (1236)
Q Consensus 757 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv 836 (1236)
+.+...++|..+|+++++.|.++|+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.++++
T Consensus 93 ~~~~~~~lr~~~~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l~ 170 (582)
T PRK11176 93 SGKVVMTMRRRLFGHMMGMPVSFFD--KQSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSLI 170 (582)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHhC--CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998 47899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040099 837 VLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGI 916 (1236)
Q Consensus 837 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1236)
+++.+|+.++...+..+..++..++.++...+....+.|.++|+++||+|+.++++.++|.+..++..+...+.......
T Consensus 171 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (582)
T PRK11176 171 LIVIAPIVSIAIRVVSKRFRNISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNRMRQQGMKMVSASSI 250 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888888999999999999999999999999999999999999998888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 040099 917 GFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDS 996 (1236)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 996 (1236)
...+...+..++.++++++|++++..|.+++|++++++.+...+..|+..+...+..++.+..+.+|+.++++.+++.+.
T Consensus 251 ~~~~~~~~~~~~~~~i~~~g~~~~~~g~is~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~~~ 330 (582)
T PRK11176 251 SDPIIQLIASLALAFVLYAASFPSVMDTLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDLEQEKDE 330 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCC
Confidence 88888888888888889999999999999999999999999889999999999999999999999999999876543221
Q ss_pred CccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 997 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
.. ...++..+.|+|+||+|+||+. ++++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|
T Consensus 331 ~~---~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~ 406 (582)
T PRK11176 331 GK---RVIERAKGDIEFRNVTFTYPGK-EVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHD 406 (582)
T ss_pred CC---cCCCCCCCeEEEEEEEEecCCC-CCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEE
Confidence 11 1122234679999999999864 3579999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHH
Q 040099 1077 IQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1077 i~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr 1140 (1236)
+++++.+++|++|+||||||++|+|||||||. +.++++++++++|+||||.+|++|.+||||||
T Consensus 407 i~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~ig~~g~~LSGGqr 486 (582)
T PRK11176 407 LRDYTLASLRNQVALVSQNVHLFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTVIGENGVLLSGGQR 486 (582)
T ss_pred hhhcCHHHHHhhceEEccCceeecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCceeCCCCCcCCHHHH
Confidence 99999999999999999999999999999995 46788999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1141 QRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|||+|||||+++|+|||||||||+||++||+.+.++|.+..+++|+|+||||+++++.||+|++|++|+|+|.|+|++|+
T Consensus 487 QRi~LARall~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~~~~D~Ii~l~~g~i~e~g~~~~l~ 566 (582)
T PRK11176 487 QRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEKADEILVVEDGEIVERGTHAELL 566 (582)
T ss_pred HHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hccCcccHHhhhccC
Q 040099 1221 STKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1221 ~~~~g~y~~L~~~q~ 1235 (1236)
++ ++.|++|++.|.
T Consensus 567 ~~-~~~y~~l~~~~~ 580 (582)
T PRK11176 567 AQ-NGVYAQLHKMQF 580 (582)
T ss_pred hC-CChHHHHHHHHh
Confidence 97 899999998764
|
|
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-79 Score=694.40 Aligned_cols=527 Identities=28% Similarity=0.410 Sum_probs=454.9
Q ss_pred hHHHHHHHHHHHHHHHHhcC--chhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 040099 700 GIIIPIFGVMLAAMVNTLNE--PKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEV 777 (1236)
Q Consensus 700 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 777 (1236)
.+.....+.++...++.... ..+.........+..|.++.+.+.++.-++.+.+.++.+++.++.-.++|++.++++.
T Consensus 43 K~l~v~vp~~~~~~id~l~~~~~~~a~~~~~~~~~~~y~iar~~s~~F~el~~~vfa~v~q~~iR~~~~~vf~~~~~ld~ 122 (591)
T KOG0057|consen 43 KILNVQVPFIFKLIIDGLNDADGNPAVLSTITALLAGYGIARLGSSVFNELRNFVFAKVAQRVIRDSSSDVFRHLMSLDL 122 (591)
T ss_pred hHhheehHHHHHHHHhhhhhcccCcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 44455556666666665531 1111122233456778888888999999999999999999999999999999999999
Q ss_pred ccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 778 GWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGL-VIAFKACWQLALLVLAIFPLLGITGHIQMKSMK 856 (1236)
Q Consensus 778 ~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~-ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~ 856 (1236)
+||.+ ..+|.+.+.+.+-...+...+.-.+..++..++.+.... .+..-.....+++.+..+.....+.+.......
T Consensus 123 ~~~~~--~~tG~l~~~idRgsraI~~vl~~~V~~i~p~~~~i~~v~~~l~~~~Ga~~~li~~~~v~~Y~a~Ti~~t~~Rn 200 (591)
T KOG0057|consen 123 SFFLS--RGTGALNRIIDRGSRAISFVLSAMVFNIIPTLFEIALVSGILYYKFGAAFALITLGTVGAYAAFTIVVTRWRN 200 (591)
T ss_pred HhhcC--CCcchHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHhheeEEeehhHHH
Confidence 99984 679999999999999999888888877777766555544 334445666666666666666666666666667
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 857 GFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVG 936 (1236)
Q Consensus 857 ~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 936 (1236)
++.++...+...+.+.+.|++.|.++||+||.|+++.++|+..+.++.++..+.+...++.......++....+.+++.|
T Consensus 201 ~fR~~~N~Adn~as~~~~dsL~Nye~VKsfNnE~~Ea~~y~~~l~~~~~~~~~~~~sl~~lnfgQ~~iFsv~~~~im~l~ 280 (591)
T KOG0057|consen 201 RFRKAMNNADNSASRRAYDSLINYEIVKSFNNEEYEASRYDGSLKTYERAGLKYSSSLAFLNFGQKAIFSVALTFIMVLG 280 (591)
T ss_pred HHHHHHHhhhhHHHHHHHHHHhhHHHHHHcccHHHHHHHHHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888889999999999999999999999999999999999999999999888887777776666677777778888888
Q ss_pred HHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEE
Q 040099 937 AKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRV 1016 (1236)
Q Consensus 937 ~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~V 1016 (1236)
..-+..+.+|+++++.+.........++..+...+.++.++..-+..++...+....++.. ..+.....+.|+|+||
T Consensus 281 ~~gi~~~~mtvgdlv~~n~l~~qL~~~l~~Lg~vyr~~~q~l~Dm~~~~~l~~~~~~i~~~---~~~i~~~~~~I~F~dV 357 (591)
T KOG0057|consen 281 SNGIAAGKMTVGDLVMVNSLLFQLSLPLNFLGSVYRELRQALTDMRTLFILLEVDEDIQEA---ALPIELFGGSIEFDDV 357 (591)
T ss_pred hhhhhhccccccchhhHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHhhhhhhhhhhhc---cCCcccCCCcEEEEee
Confidence 8888999999999999999999999999999999999999999988888775543333221 1123345678999999
Q ss_pred EEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC
Q 040099 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP 1096 (1236)
Q Consensus 1017 sf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp 1096 (1236)
+|.|++ ++++|+++||+|++||||||||+|||||||++++|+||+| ++|+|+|||+|+++++++.+|+.||+||||.
T Consensus 358 ~f~y~~--k~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~SlR~~Ig~VPQd~ 434 (591)
T KOG0057|consen 358 HFSYGP--KRKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLESLRQSIGVVPQDS 434 (591)
T ss_pred EEEeCC--CCceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChHHhhhheeEeCCcc
Confidence 999984 4569999999999999999999999999999999999999 9999999999999999999999999999999
Q ss_pred CCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1097 VLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1097 ~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
.||++||.+||. +.+++||.+.++|+||+|.|||+|..||||||||++||||+|+||||+++|||
T Consensus 435 ~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T~VGerG~~LSGGekQrvslaRa~lKda~Il~~DEa 514 (591)
T KOG0057|consen 435 VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQTLVGERGLMLSGGEKQRVSLARAFLKDAPILLLDEA 514 (591)
T ss_pred cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchhhHhhcccccccchHHHHHHHHHHhcCCCeEEecCc
Confidence 999999999993 88999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1162 TSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
||+||.+||+.+.+++.....++|+|+|+||++++++||+|+|+++|+|+|.|+|+||++ +++.|+.+|..|.
T Consensus 515 TS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~~~DkI~~l~nG~v~e~gth~ell~-~s~~~~~~w~~~~ 587 (591)
T KOG0057|consen 515 TSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLKDFDKIIVLDNGTVKEYGTHSELLA-PSELYADLWTTQT 587 (591)
T ss_pred ccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHhcCCEEEEEECCeeEEeccHHHHhh-hhhHHHHHhcccc
Confidence 999999999999999999889999999999999999999999999999999999999999 5999999998764
|
|
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-78 Score=759.71 Aligned_cols=549 Identities=24% Similarity=0.335 Sum_probs=463.3
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 676 SRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAV 755 (1236)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 755 (1236)
++++.+.++.++.+.+.++++++..+.....++++..+++...............+.++++++.++..++.+++.+....
T Consensus 12 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (592)
T PRK10790 12 KRLLAYGSPWRKPLGLAVLMLWVAAAAEVSGPLLISYFIDNMVAKGNLPLGLVAGLAAAYVGLQLLAAGLHYAQSLLFNR 91 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444455566666677777777777777777888888876533211101111112233444455566777888888999
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040099 756 AGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLAL 835 (1236)
Q Consensus 756 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~l 835 (1236)
.+.+...++|.++|+++++.|.+||+ ++++|++++|+++|++.++..+...+..++..+..+++.++++++++|.+++
T Consensus 92 ~~~~~~~~lr~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~d~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l 169 (592)
T PRK10790 92 AAVGVVQQLRTDVMDAALRQPLSAFD--TQPVGQLISRVTNDTEVIRDLYVTVVATVLRSAALIGAMLVAMFSLDWRMAL 169 (592)
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHhC--CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998 4789999999999999999999999999999998888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040099 836 LVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSG 915 (1236)
Q Consensus 836 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1236)
++++++|++++...+..+..+...++..+...+...++.|.++|+++||+|+.++++.++|.+..++..+...+......
T Consensus 170 i~l~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 249 (592)
T PRK10790 170 VAIMIFPAVLVVMVIYQRYSTPIVRRVRAYLADINDGFNEVINGMSVIQQFRQQARFGERMGEASRSHYMARMQTLRLDG 249 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999898887777777777777777777788889999999999999999999999999999988887777666555544
Q ss_pred HH-HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 916 IG-FGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 916 ~~-~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
.. ..+...+..+...+++++++. +..|.+++|.++++..+...+..|+..+...+..++.+..+++|+.++++.+++.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~-~~~g~is~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~ri~~~l~~~~~~ 328 (592)
T PRK10790 250 FLLRPLLSLFSALILCGLLMLFGF-SASGTIEVGVLYAFISYLGRLNEPLIELTTQQSMLQQAVVAGERVFELMDGPRQQ 328 (592)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-HHCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence 32 233333333332333333333 5789999999999999999999999999999999999999999999998765432
Q ss_pred CCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 995 ~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
.... ..+...++|+|+||+|+||+. .++|+|+||+|+|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 329 ~~~~----~~~~~~~~i~~~~v~f~y~~~--~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg 402 (592)
T PRK10790 329 YGND----DRPLQSGRIDIDNVSFAYRDD--NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDG 402 (592)
T ss_pred CCCC----ccCCCCCeEEEEEEEEEeCCC--CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECC
Confidence 1111 112234689999999999843 4699999999999999999999999999999999999999999999999
Q ss_pred eecccCChHHHhcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHH
Q 040099 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1075 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr 1140 (1236)
+|+++++++++|++|+||||||.+|+|||||||. +.+++++++.++|+||||.+||+|.+||||||
T Consensus 403 ~~i~~~~~~~l~~~i~~v~Q~~~lF~~Ti~~NI~~~~~~~d~~i~~a~~~~gl~~~i~~lp~Gldt~i~e~g~~LSGGqr 482 (592)
T PRK10790 403 RPLSSLSHSVLRQGVAMVQQDPVVLADTFLANVTLGRDISEEQVWQALETVQLAELARSLPDGLYTPLGEQGNNLSVGQK 482 (592)
T ss_pred EEhhhCCHHHHHhheEEEccCCccccchHHHHHHhCCCCCHHHHHHHHHHcCcHHHHHhccccccccccCCCCCCCHHHH
Confidence 9999999999999999999999999999999994 67889999999999999999999999999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1141 QRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|||||||||+++|+|||||||||+||++||+.|++.|++..++||+|+||||+++++.||+|++|++|+++|.|+|+||+
T Consensus 483 QRialARaLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~~~D~ii~l~~G~i~~~G~~~~L~ 562 (592)
T PRK10790 483 QLLALARVLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIVEADTILVLHRGQAVEQGTHQQLL 562 (592)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 99999999999999999999999999999999999999988899999999999999999999999999999999999999
Q ss_pred hccCcccHHhhhcc
Q 040099 1221 STKNGIYTSLIEPH 1234 (1236)
Q Consensus 1221 ~~~~g~y~~L~~~q 1234 (1236)
++ ++.|++|++.|
T Consensus 563 ~~-~~~y~~l~~~~ 575 (592)
T PRK10790 563 AA-QGRYWQMYQLQ 575 (592)
T ss_pred hC-CCHHHHHHHHH
Confidence 97 89999999865
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-78 Score=814.27 Aligned_cols=565 Identities=21% Similarity=0.309 Sum_probs=435.7
Q ss_pred ccchHHHHHHhhchhhH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHH
Q 040099 43 GRIPFHKLLSFADLLDS-VLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121 (1236)
Q Consensus 43 ~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1236)
+...+..++.|++.... +.+++.+++.++...+....++.++...|....... ....+...+++++++..++.
T Consensus 897 g~v~~~vy~~Y~~~~g~~~~~~~~~~~~~~~~~~~~~~~~wl~~w~~~~~~~~~------~~~~~~~i~~~l~~~~~i~~ 970 (1622)
T PLN03130 897 GVVSWKVLERYKNALGGAWVVMILFLCYVLTEVFRVSSSTWLSEWTDQGTPKTH------GPLFYNLIYALLSFGQVLVT 970 (1622)
T ss_pred CccCHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCCC------chhHHHHHHHHHHHHHHHHH
Confidence 34456666677654221 121222222223333333444555665554221111 01123344566667777888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAF 201 (1236)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1236)
+++.++..+.+.+...++|.++|++++++|++||+++ ++|++++|+++|++.+++.+...+..++..++.+++.+++++
T Consensus 971 ~~~~~~~~~~~~~~~~~L~~~l~~~ll~~p~~ffd~~-~~G~IlnR~s~Di~~id~~l~~~~~~~~~~~~~~i~~~i~i~ 1049 (1622)
T PLN03130 971 LLNSYWLIMSSLYAAKRLHDAMLGSILRAPMSFFHTN-PLGRIINRFAKDLGDIDRNVAVFVNMFLGQIFQLLSTFVLIG 1049 (1622)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhccC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999999 999999999999999999999999999999999999988888
Q ss_pred HHhHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 040099 202 FKGWLLTLTMLSSIPPLVI-AGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKS 280 (1236)
Q Consensus 202 ~~~~~l~l~~l~~~p~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 280 (1236)
+++|. .++++++++++++ +..++.+..++..+......+.+.+.+.|+++|+++||+|++++++.+++.+..+..
T Consensus 1050 ~~~~~-~~~~~~pl~~~~~~~~~~~~~~~r~~~r~~~~~~s~~~~~~~Etl~Gi~tIraf~~~~~f~~~~~~~~~~~--- 1125 (1622)
T PLN03130 1050 IVSTI-SLWAIMPLLVLFYGAYLYYQSTAREVKRLDSITRSPVYAQFGEALNGLSTIRAYKAYDRMAEINGRSMDNN--- 1125 (1622)
T ss_pred HHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHhCCHHHHHhCcHHHHHHHHHHHHHHHH---
Confidence 88873 3333333333322 233444555566666667778899999999999999999999886666555544443
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHH-HHHHHHhcC---------cChhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 281 SVQEGLATGLGLGASVFIIFSAYGLGVWY-GAKLILEKG---------YSGGDVMSVIFGVLIGSMSLGQASPCLSAFAA 350 (1236)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~v~~g~---------~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 350 (1236)
.+..........+..+...+...+++++ |...+..+. .++|.++ .+.+....++..+......+++
T Consensus 1126 -~~~~~~~~~~~~wl~~~l~~~~~~~i~~~~~~~v~~~~~~~~~~~~~~~~G~~l---s~~~~~~~~l~~l~~~~~~~e~ 1201 (1622)
T PLN03130 1126 -IRFTLVNMSSNRWLAIRLETLGGLMIWLTASFAVMQNGRAENQAAFASTMGLLL---SYALNITSLLTAVLRLASLAEN 1201 (1622)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccchhhhHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333222222221111122222333 333344332 2334333 3444455566666777788899
Q ss_pred HHHHHHHHHHHhccCCCccccccCCCCC--CCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHH
Q 040099 351 GQAAAFKFFEAINRKPEIDLCCVNGKKL--DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKST 428 (1236)
Q Consensus 351 ~~~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKST 428 (1236)
+.+|.+|+.++++.++|.+.......++ .+.+|.|+|+||+|+|+++ .++||+|+||+|+|||++||||||||||||
T Consensus 1202 ~~~sveRi~e~~~~~~E~~~~~~~~~~~~~wp~~g~I~f~nVsf~Y~~~-~~~VL~~is~~I~~GekVaIVGrSGSGKST 1280 (1622)
T PLN03130 1202 SLNAVERVGTYIDLPSEAPLVIENNRPPPGWPSSGSIKFEDVVLRYRPE-LPPVLHGLSFEISPSEKVGIVGRTGAGKSS 1280 (1622)
T ss_pred HHHHHHHHHHHhCCCCcccccccCCCCCCCCCCCCcEEEEEEEEEeCCC-CCceecceeEEEcCCCEEEEECCCCCCHHH
Confidence 9999999999998876643211111111 1345789999999999642 347999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHh
Q 040099 429 VISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKN 508 (1236)
Q Consensus 429 l~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~ 508 (1236)
|+++|.|+|+|++|+|++||+|+++++.+++|++|+||||||.||+|||||||.+++ .++++++++|++.+++++|+.+
T Consensus 1281 Ll~lL~rl~~p~~G~I~IDG~dI~~i~l~~LR~~IsiVpQdp~LF~GTIreNLd~~~-~~tdeei~~Al~~a~l~~~I~~ 1359 (1622)
T PLN03130 1281 MLNALFRIVELERGRILIDGCDISKFGLMDLRKVLGIIPQAPVLFSGTVRFNLDPFN-EHNDADLWESLERAHLKDVIRR 1359 (1622)
T ss_pred HHHHHhCcCCCCCceEEECCEecccCCHHHHHhccEEECCCCccccccHHHHhCcCC-CCCHHHHHHHHHHcCcHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999987 4689999999999999999999
Q ss_pred CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhc
Q 040099 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNA 588 (1236)
Q Consensus 509 l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~a 588 (1236)
+|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||++||+.|+++|++..+++|+|+||||++++.+|
T Consensus 1360 lp~GLdt~Vge~G~nLSgGQrQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~~ 1439 (1622)
T PLN03130 1360 NSLGLDAEVSEAGENFSVGQRQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIIDC 1439 (1622)
T ss_pred CccccCccccCCCCCCCHHHHHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHhC
Confidence 99999999999999999999999999999999999999999999999999999999999998899999999999999999
Q ss_pred CeEEEEECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 589 NIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 589 d~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|||+||++|+|+|.|+|+||+++++|.|+++++.+.
T Consensus 1440 DrIlVLd~G~IvE~Gt~~eLl~~~~g~f~~L~~~~~ 1475 (1622)
T PLN03130 1440 DRILVLDAGRVVEFDTPENLLSNEGSAFSKMVQSTG 1475 (1622)
T ss_pred CEEEEEECCEEEEeCCHHHHHhCCCCHHHHHHHHcC
Confidence 999999999999999999999876689999987654
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-78 Score=766.79 Aligned_cols=552 Identities=27% Similarity=0.410 Sum_probs=483.7
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 754 (1236)
+++++...++.++.+...++++++..+.....++++..+++....... ......+...++++.++..++.+++.++..
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~s~~~~ll~l~~p~~~~~iid~v~~~~~--~~~l~~l~~~~~~~~~~~~~~~~l~~~~~~ 204 (694)
T TIGR01846 127 FSWFIPAIIRYRKQFREVLLISLALQLFALVTPLLFQVVIDKVLVHRG--LSTLSVLALAMLAVAIFEPALGGLRTYLFA 204 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445554445555555555555666555566667777777776542211 112233444555566667788899999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834 (1236)
Q Consensus 755 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~ 834 (1236)
..+.++..++|.++|++++++|++||+ ++++|++++|+ +|++.+++++...+...+..++..++.++++++++|.++
T Consensus 205 ~~~~~~~~~l~~~~~~~l~~l~~~~f~--~~~~g~~~~rl-~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 281 (694)
T TIGR01846 205 HLTSRIDVELGARLYRHLLGLPLGYFE--SRRVGDTVARV-RELEQIRNFLTGSALTVVLDLLFVVVFLAVMFFYSPTLT 281 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHcC--CCCHHHHHHHh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999 48899999999 799999999988888877777777777888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 835 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
+++++++|+++++..+..+..++..++..+..++..+.+.|+++|+++||+||.++++.++|.+..++..+...+.....
T Consensus 282 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~ 361 (694)
T TIGR01846 282 GVVIGSLVCYALLSVFVGPILRKRVEDKFERSAAATSFLVESVTGIETIKATATEPQFQNRWDRQLAAYVAASFRVTNLG 361 (694)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998888888887777777777788889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
.....+...+..+..++++++|++++..|.+|+|+++++..+...+..|+..+...+..++.+..+.+|+.++++.+++.
T Consensus 362 ~~~~~~~~~i~~~~~~~il~~g~~lv~~g~it~G~lia~~~l~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~e~ 441 (694)
T TIGR01846 362 NIAGQAIELIQKLTFAILLWFGAHLVIGGALSPGQLVAFNMLAGRVTQPVLRLAQLWQDFQQTGIALERLGDILNSPTEP 441 (694)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 88888888888888999999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 995 ~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
+... ....+...+.|+|+||+|+|++. ++++|+|+||+|+|||++||||+||||||||+++|.|+|+|++|+|++||
T Consensus 442 ~~~~--~~~~~~~~~~i~~~~vsf~y~~~-~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg 518 (694)
T TIGR01846 442 RSAG--LAALPELRGAITFENIRFRYAPD-SPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDG 518 (694)
T ss_pred cCCC--CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC
Confidence 2211 11123345789999999999754 34699999999999999999999999999999999999999999999999
Q ss_pred eecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhH
Q 040099 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1075 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ 1139 (1236)
+|+++++.+++|++|+||||||++|++||||||. +.+++++++.++|+||||.+|++|.+|||||
T Consensus 519 ~~i~~~~~~~~r~~i~~v~q~~~lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq 598 (694)
T TIGR01846 519 VDLAIADPAWLRRQMGVVLQENVLFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTEVGEKGANLSGGQ 598 (694)
T ss_pred EehhhCCHHHHHHhCeEEccCCeehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcEecCCCCCCCHHH
Confidence 9999999999999999999999999999999995 5678899999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|||++|||||+++|+|||||||||+||+++|+.+.+.|++..+++|+|+||||+++++.||+|++|++|+|+|.|+|+||
T Consensus 599 ~qri~lARall~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~ii~l~~G~i~~~g~~~~l 678 (694)
T TIGR01846 599 RQRIAIARALVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVRACDRIIVLEKGQIAESGRHEEL 678 (694)
T ss_pred HHHHHHHHHHHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHHhCCEEEEEeCCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhccCcccHHhhhccC
Q 040099 1220 ISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1220 l~~~~g~y~~L~~~q~ 1235 (1236)
+++ +|.|++|++.|.
T Consensus 679 ~~~-~~~y~~l~~~~~ 693 (694)
T TIGR01846 679 LAL-QGLYARLWQQQS 693 (694)
T ss_pred HHc-CChHHHHHHhhc
Confidence 996 899999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-80 Score=678.58 Aligned_cols=492 Identities=31% Similarity=0.437 Sum_probs=446.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIG-GFLIAFFK 203 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~~~~ 203 (1236)
..++...++.....+-.+.|.|++++++.|+-++ .+|.+...+..-.+.|+..+...+...+..++-+.. +.++...+
T Consensus 3 ~~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~r-~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 3 DRLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLER-RTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred hHhhhHHHHHHHHHHHHHHHHHHHhcchhhhhhc-ccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 3456777888888899999999999999999998 999999888888888888877777777766665443 44456678
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|..++++++++.++.++.......-....++..++.++.++...+++-+..+||.|+.|+.+..+|++.++.+.+...|
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999888888777666655555556677788889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
.....++....-..+...+...+...+...+..|.+|+|+++....++.+...|+..++..+..+.++..-.++.+++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 88877777777777777888888889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCC-CCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 364 RKPEIDLCCVNGKKLD-DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~-~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
.+.+..+.+ +.++.. ...|.+.|+||+|.|. +.+++|+++||++++|+++|+|||||+||||++++|.|||++++|
T Consensus 242 ~~~~v~d~p-da~~L~~~~~g~v~F~~V~F~y~--~~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG 318 (497)
T COG5265 242 VEAEVSDAP-DAPPLWPVRLGAVAFINVSFAYD--PRRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSG 318 (497)
T ss_pred cchhhccCC-CCccccccccceEEEEEEEeecc--ccchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCc
Confidence 887765543 223333 3457899999999996 457899999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCC
Q 040099 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522 (1236)
Q Consensus 443 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~ 522 (1236)
.|.+||+|+++...+++|+.||+||||..||++|+..||.||+|.++++|+..+++.+++++||..+|+||+|.|||+|-
T Consensus 319 ~I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgergl 398 (497)
T COG5265 319 SITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGL 398 (497)
T ss_pred eEEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchhee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
.||||||||+||||+++++|+||+|||+|||||.+||+.|+.+|++..+|+|+++|+|||+|+-+||.|+||++|+|+|.
T Consensus 399 klSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~er 478 (497)
T COG5265 399 KLSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVER 478 (497)
T ss_pred eccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEec
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCcccccccccchhhhhHH
Q 040099 603 GTHSELLENPYGAYNRLIR 621 (1236)
Q Consensus 603 g~~~~l~~~~~~~y~~~~~ 621 (1236)
|+|+||++. +|.|++||.
T Consensus 479 g~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 479 GTHEELLAA-GGLYAEMWR 496 (497)
T ss_pred CcHHHHHHc-CChHHHHhc
Confidence 999999998 899999985
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-77 Score=801.43 Aligned_cols=510 Identities=19% Similarity=0.231 Sum_probs=434.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040099 112 YLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGA 191 (1236)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 191 (1236)
++.++..++.+++.+.....+.+...++|.++|++++++|+.||+++ ++|++++|+++|++.+.+.+...+..++..++
T Consensus 1006 ~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ffd~~-~~G~ilnR~s~Di~~id~~l~~~l~~~~~~~~ 1084 (1560)
T PTZ00243 1006 GIVLLGTFSVPLRFFLSYEAMRRGSRNMHRDLLRSVSRGTMSFFDTT-PLGRILNRFSRDIDILDNTLPMSYLYLLQCLF 1084 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChhhccCC-CccHHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555666777788999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH
Q 040099 192 SFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYN 271 (1236)
Q Consensus 192 ~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 271 (1236)
.+++.++++++.+|.+.++++.++.+++.+..++.+..++..+......+.+.+.+.|+++|+++||+|++|+.+.++|.
T Consensus 1085 ~~i~~li~~~~~~p~~~~~~i~~~~~~~~i~~~~~~~~r~~~r~~~~~~s~l~s~~~E~l~G~~tIraf~~e~~~~~~~~ 1164 (1560)
T PTZ00243 1085 SICSSILVTSASQPFVLVALVPCGYLYYRLMQFYNSANREIRRIKSVAKSPVFTLLEEALQGSATITAYGKAHLVMQEAL 1164 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHcCHHHHHhCccHHHHHHHHH
Confidence 99999999999998554443333333344455566667777777778888999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH--HhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 272 KCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLI--LEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFA 349 (1236)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v--~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (1236)
+..+...+...+......+......++..+..+++.++|...+ ..+.+++|.+..++.+......|+..+...+..++
T Consensus 1165 ~~~d~~~~~~~~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~l~~a~~l~~~l~~l~~~~~~le 1244 (1560)
T PTZ00243 1165 RRLDVVYSCSYLENVANRWLGVRVEFLSNIVVTVIALIGVIGTMLRATSQEIGLVSLSLTMAMQTTATLNWLVRQVATVE 1244 (1560)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888877776666666666666665555444444444433 34567899888888888888899999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccc--------------------------ccCCC---CCCCCCCcEEEEeEEEECCCCCCC
Q 040099 350 AGQAAAFKFFEAINRKPEIDLC--------------------------CVNGK---KLDDIRGDIELKDVNFSYPARPDE 400 (1236)
Q Consensus 350 ~~~~s~~ri~~~l~~~~~~~~~--------------------------~~~~~---~~~~~~~~i~~~~v~f~y~~~~~~ 400 (1236)
++..|.+|++++++..|+.+.. ..... +.+...|.|+|+||+|+|+++ .+
T Consensus 1245 ~~~~s~eRi~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~f~nVsf~Y~~~-~~ 1323 (1560)
T PTZ00243 1245 ADMNSVERLLYYTDEVPHEDMPELDEEVDALERRTGMAADVTGTVVIEPASPTSAAPHPVQAGSLVFEGVQMRYREG-LP 1323 (1560)
T ss_pred HHHHHHHHHHHHHhcCCccccccccccccccccccccccccccccccccCCCcccCCCCCCCCeEEEEEEEEEeCCC-CC
Confidence 9999999999999754332100 00000 011234789999999999743 34
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
++|+||||+|+|||++||||+||||||||+++|+|+|+|++|+|++||+|+++++.+++|++|+||||||.||+||||||
T Consensus 1324 ~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l~~LR~~I~iVpQdp~LF~gTIreN 1403 (1560)
T PTZ00243 1324 LVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGLRELRRQFSMIPQDPVLFDGTVRQN 1403 (1560)
T ss_pred ceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCHHHHHhcceEECCCCccccccHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC-CCEEEEeCcCCCCCHHHH
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD-PRILLLDEATSALDSESG 559 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~-p~ililDE~ts~lD~~~~ 559 (1236)
|..+. +++++++++|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++ |+|||||||||+||++|+
T Consensus 1404 Idp~~-~~sdeeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQrQrLaLARALL~~~~~ILlLDEATSaLD~~te 1482 (1560)
T PTZ00243 1404 VDPFL-EASSAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQRQLMCMARALLKKGSGFILMDEATANIDPALD 1482 (1560)
T ss_pred hCccc-CCCHHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHHHHHHHHHHHhcCCCCEEEEeCCCccCCHHHH
Confidence 98754 6789999999999999999999999999999999999999999999999999996 899999999999999999
Q ss_pred HHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 560 RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 560 ~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
+.|++.|++..+++|+|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1483 ~~Iq~~L~~~~~~~TvI~IAHRl~ti~~~DrIlVLd~G~VvE~Gt~~eLl~~~~~~f~~l~~~~~ 1547 (1560)
T PTZ00243 1483 RQIQATVMSAFSAYTVITIAHRLHTVAQYDKIIVMDHGAVAEMGSPRELVMNRQSIFHSMVEALG 1547 (1560)
T ss_pred HHHHHHHHHHCCCCEEEEEeccHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 99999999988899999999999999999999999999999999999999866799999987653
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-77 Score=802.95 Aligned_cols=511 Identities=21% Similarity=0.291 Sum_probs=416.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHH
Q 040099 106 VSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGK 185 (1236)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 185 (1236)
+...+++++++..++.+++.++....+.+...++|.+++++++++|++||+++ ++|++++|+++|++.+++.+...+..
T Consensus 952 ~l~~y~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~p~~ff~~~-~~G~ilnr~s~Di~~id~~l~~~~~~ 1030 (1495)
T PLN03232 952 YIVVYALLGFGQVAVTFTNSFWLISSSLHAAKRLHDAMLNSILRAPMLFFHTN-PTGRVINRFSKDIGDIDRNVANLMNM 1030 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCeeeeCcC-CchHHHHHhHhhHHHHHHHHHHHHHH
Confidence 34455666777778889999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 040099 186 FIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGV-VMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQ 264 (1236)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 264 (1236)
++..++.++++++++++++|.. ++++++++++++... ++.+..++..+......+.+.+.+.|+++|+++||+|+.++
T Consensus 1031 ~~~~~~~~i~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~s~~~~~~~E~l~G~~tIraf~~~~ 1109 (1495)
T PLN03232 1031 FMNQLWQLLSTFALIGTVSTIS-LWAIMPLLILFYAAYLYYQSTSREVRRLDSVTRSPIYAQFGEALNGLSSIRAYKAYD 1109 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHhcChHHHhcCCcHH
Confidence 9999988888888888877633 333333333332323 33344555666667778889999999999999999999998
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHH-hcCc----ChhHHH-HHHHHHHHHHHH
Q 040099 265 QASSIYNKCLVKSYKSSVQEGLATGLGLGASVF-IIFSAYGLGVWYGAKLIL-EKGY----SGGDVM-SVIFGVLIGSMS 337 (1236)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~~~v~-~g~~----t~g~~~-~~~~~~~~~~~~ 337 (1236)
++.+++.+..+...+... .......+..+ +..++.+++++.|...+. .|.+ ..+.++ .++.+......|
T Consensus 1110 ~~~~~~~~~~~~~~~~~~----~~~~~~~wl~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 1185 (1495)
T PLN03232 1110 RMAKINGKSMDNNIRFTL----ANTSSNRWLTIRLETLGGVMIWLTATFAVLRNGNAENQAGFASTMGLLLSYTLNITTL 1185 (1495)
T ss_pred HHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHHHHH
Confidence 777666655544443332 22222221111 111222222333334443 2332 112222 244556666778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCC--CCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcE
Q 040099 338 LGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL--DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTI 415 (1236)
Q Consensus 338 l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~--~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~ 415 (1236)
+..+...+..++.+.+|.+|+.++++.++|.+.......++ .+.+|.|+|+||+|+|+++ .+++|+|+||+|+|||+
T Consensus 1186 l~~l~~~~~~~~~~~~s~eRi~e~~~~~~e~~~~~~~~~~~~~~p~~g~I~f~nVsf~Y~~~-~~~vL~~isl~I~~Gek 1264 (1495)
T PLN03232 1186 LSGVLRQASKAENSLNSVERVGNYIDLPSEATAIIENNRPVSGWPSRGSIKFEDVHLRYRPG-LPPVLHGLSFFVSPSEK 1264 (1495)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccccCCCCCCCCCCCCcEEEEEEEEEECCC-CCcccccceEEEcCCCE
Confidence 88888999999999999999999998876643211111111 2345789999999999632 35799999999999999
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHH
Q 040099 416 AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQA 495 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~ 495 (1236)
+|||||||||||||+++|.|+|+|++|+|.+||+|+++++.+++|++|+||||||.||+|||||||.+++ +++++++++
T Consensus 1265 vaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~~~lR~~i~iVpQdp~LF~gTIr~NL~~~~-~~sdeei~~ 1343 (1495)
T PLN03232 1265 VGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFS-EHNDADLWE 1343 (1495)
T ss_pred EEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCHHHHHhhcEEECCCCeeeCccHHHHcCCCC-CCCHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986 579999999
Q ss_pred HHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceE
Q 040099 496 AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTT 575 (1236)
Q Consensus 496 ~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~ 575 (1236)
|++.+++++++.++|+||||.+||+|.+|||||||||||||||+++|+|||||||||+||++|++.|++.|++..+++|+
T Consensus 1344 al~~a~l~~~I~~lp~GLdt~v~e~G~~LSgGQrQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~Tv 1423 (1495)
T PLN03232 1344 ALERAHIKDVIDRNPFGLDAEVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTM 1423 (1495)
T ss_pred HHHHcCCHHHHHhCcCCCCceecCCCCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999889999
Q ss_pred EEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 576 VIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 576 i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+||||++++.+||+|+||++|+|+|.|+|+||++++++.|+++++.+.
T Consensus 1424 I~IAHRl~ti~~~DrIlVL~~G~ivE~Gt~~eLl~~~~~~f~~l~~~~~ 1472 (1495)
T PLN03232 1424 LVIAHRLNTIIDCDKILVLSSGQVLEYDSPQELLSRDTSAFFRMVHSTG 1472 (1495)
T ss_pred EEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHhC
Confidence 9999999999999999999999999999999999885569999987654
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-77 Score=742.38 Aligned_cols=548 Identities=33% Similarity=0.507 Sum_probs=490.7
Q ss_pred HhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 678 LAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAG 757 (1236)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 757 (1236)
++.+.++.++.++++++++++.+++.+..++++..+++....... ......+...++++.++..++.+++.+...+.+
T Consensus 5 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~ 82 (571)
T TIGR02203 5 LWSYVRPYKAGLVLAGVAMILVAATESTLAALLKPLLDDGFGGRD--RSVLWWVPLVVIGLAVLRGICSFVSTYLLSWVS 82 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344445566777778888888888888888888777765433211 111222334556666777788888999999999
Q ss_pred HHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 040099 758 CKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLV 837 (1236)
Q Consensus 758 ~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~ 837 (1236)
.++..++|..+++++++.|.++|++ .++|++.+|+++|++.++.++...+..++..+..+++.++++++++|.+++++
T Consensus 83 ~~~~~~lr~~l~~~~~~~~~~~~~~--~~~g~~~~~l~~di~~i~~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~l~~i~ 160 (571)
T TIGR02203 83 NKVVRDIRVRMFEKLLGLPVSFFDR--QPTGTLLSRITFDSEQVASAATDAFIVLVRETLTVIGLFIVLLYYSWQLTLIV 160 (571)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHhCC--CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 9999999999999999999999984 78999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Q 040099 838 LAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIG 917 (1236)
Q Consensus 838 l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 917 (1236)
+++.|+.+++..+..+..++...+..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+........
T Consensus 161 l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 240 (571)
T TIGR02203 161 VVMLPVLSILMRRVSKRLRRISKEIQNSMGQVTTVAEETLQGYRVVKLFGGQAYETRRFDAVSNRNRRLAMKMTSAGSIS 240 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888889999999999999999999999999999999999999999999988888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCC
Q 040099 918 FGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSS 997 (1236)
Q Consensus 918 ~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~ 997 (1236)
..+...+..+..++++++|++++..|.+++|.++++..+...+..|+..+......+..+..+.+|+.++++.+++.+..
T Consensus 241 ~~~~~~~~~~~~~~~~~~g~~~~~~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~ 320 (571)
T TIGR02203 241 SPITQLIASLALAVVLFIALFQAQAGSLTAGDFTAFITAMIALIRPLKSLTNVNAPMQRGLAAAESLFTLLDSPPEKDTG 320 (571)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCC
Confidence 88888888888999999999999999999999999999999999999999999999999999999999999765543221
Q ss_pred ccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 998 EYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 998 ~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
. ...++..+.|+++||+|+|+++ +.++|+|+||+|+|||+++|+|+||||||||+++|.|+|+|++|+|++||+|+
T Consensus 321 ~---~~~~~~~~~i~~~~v~f~y~~~-~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i 396 (571)
T TIGR02203 321 T---RAIERARGDVEFRNVTFRYPGR-DRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDL 396 (571)
T ss_pred C---CCCCCCCCeEEEEEEEEEcCCC-CCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeH
Confidence 1 1112235689999999999864 34799999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHH
Q 040099 1078 QKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1078 ~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQ 1141 (1236)
++++.+++|++++||||||++|+|||||||. +.+++++++.++|+|+||.+|++|.+|||||||
T Consensus 397 ~~~~~~~~~~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~i~~~g~~LSgGqrQ 476 (571)
T TIGR02203 397 ADYTLASLRRQVALVSQDVVLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTPIGENGVLLSGGQRQ 476 (571)
T ss_pred HhcCHHHHHhhceEEccCcccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccceecCCCCcCCHHHHH
Confidence 9999999999999999999999999999984 467888999999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|||||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 477 RiaLARall~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~~~~D~ii~l~~g~i~~~g~~~~l~~ 556 (571)
T TIGR02203 477 RLAIARALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTIEKADRIVVMDDGRIVERGTHNELLA 556 (571)
T ss_pred HHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHHHhCCEEEEEeCCEEEeeCCHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccCcccHHhhhcc
Q 040099 1222 TKNGIYTSLIEPH 1234 (1236)
Q Consensus 1222 ~~~g~y~~L~~~q 1234 (1236)
+ ++.|+++++.|
T Consensus 557 ~-~~~~~~~~~~~ 568 (571)
T TIGR02203 557 R-NGLYAQLHNMQ 568 (571)
T ss_pred c-CCHHHHHHHHh
Confidence 7 78999988755
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-77 Score=673.86 Aligned_cols=490 Identities=25% Similarity=0.326 Sum_probs=429.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 040099 737 ALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNT 816 (1236)
Q Consensus 737 ~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~ 816 (1236)
++++...+..+..-++.+.+..++...+|.++|+++...+..-.. ...+|+++||+..|++.+|+++-..+.+.+..+
T Consensus 66 ~~aI~Rt~~RY~ERlvsH~AtfrvL~~lRv~~f~kl~p~sp~~~~--r~r~gdLL~RLvaDVd~Ld~lyLRvi~P~~~a~ 143 (573)
T COG4987 66 GLAILRTAARYVERLVSHDATFRVLSALRVRLFEKLEPLSPALLL--RYRSGDLLNRLVADVDALDNLYLRVIAPAVVAL 143 (573)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccCChHHHH--hcChHhHHHHHHhhHHHHhhHHHHHHhhHHHHH
Confidence 356677788888888999999999999999999999998888776 478999999999999999999999999999888
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH-HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHH
Q 040099 817 ATAVVGLVIAFKACWQLALLVLAIF-PLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKL 895 (1236)
Q Consensus 817 ~~~v~~~ii~~~~~~~l~lv~l~~~-pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~ 895 (1236)
+...+..+...+++|.+++.+..++ .+++++.++..++-++..+......+...+++.|.+.|....+.||+++.+.+.
T Consensus 144 ~~~~~~~i~L~f~~~~~Alll~~~ll~~lli~P~~~~~~~~~~~~~l~~~r~~lr~~~td~v~G~~EL~~~g~~~~~~~~ 223 (573)
T COG4987 144 VLIAVVTIGLSFFSIPLALLLGLILLLLLLIIPTLFYRAGRKFGAHLAQGRAALRSQFTDWVQGQAELLIFGAEDAYRTA 223 (573)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhHHHHHHcccHHHHHHH
Confidence 8887777777778888887766554 444566788888888888888889999999999999999999999999999999
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH-HHHHHH
Q 040099 896 YKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTS-SLASDA 974 (1236)
Q Consensus 896 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~ 974 (1236)
+.+..+.+.+...+......+......++..+..+..+.+.+-.+..|..+......+.+.+.....++..+. ..+.+.
T Consensus 224 l~~~e~~~~~~q~k~~~~~~~~~a~~~l~~g~~v~~~l~w~a~~~~~G~~~~~~aa~~ll~~f~~~eaf~~L~~~A~~~l 303 (573)
T COG4987 224 LEATEASWLKAQRKQARFTGLSDAILLLIAGLLVIGLLLWMAAQVGAGALAQPGAALALLVIFAALEAFEPLAPGAFQHL 303 (573)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCcchhHHHHHHHHHHHHHHHHhhhcchhHHHh
Confidence 9999999999999999988888888887777777744444444566676665444444444444555555555 667889
Q ss_pred HHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHH
Q 040099 975 SKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST 1054 (1236)
Q Consensus 975 ~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKST 1054 (1236)
.+...++.|+.++.+++++...+.+ +.+...-.++++||+|+||++ ..++|+|+||++++||||||+|||||||||
T Consensus 304 gq~~~Sa~Rl~~i~~q~~e~~~~~~---~~~~~~~~l~~~~vsF~y~~~-~~~~L~~~~l~l~~GEkvAIlG~SGsGKST 379 (573)
T COG4987 304 GQVIASARRLNDILDQKPEVTFPDE---QTATTGQALELRNVSFTYPGQ-QTKALKNFNLTLAQGEKVAILGRSGSGKST 379 (573)
T ss_pred hHHHHHHHHHhhhccCCcccCCCcc---ccCCccceeeeccceeecCCC-ccchhhccceeecCCCeEEEECCCCCCHHH
Confidence 9999999999999998877654411 111111279999999999976 457999999999999999999999999999
Q ss_pred HHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHh
Q 040099 1055 VISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISG 1119 (1236)
Q Consensus 1055 L~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~ 1119 (1236)
++++|.|-|+|++|+|.++|.|++.++.+.+|+.|++++|.++||++|+|+||. +.+++++++++
T Consensus 380 llqLl~~~~~~~~G~i~~~g~~~~~l~~~~~~e~i~vl~Qr~hlF~~Tlr~NL~lA~~~AsDEel~~aL~qvgL~~l~~~ 459 (573)
T COG4987 380 LLQLLAGAWDPQQGSITLNGVEIASLDEQALRETISVLTQRVHLFSGTLRDNLRLANPDASDEELWAALQQVGLEKLLES 459 (573)
T ss_pred HHHHHHhccCCCCCeeeECCcChhhCChhhHHHHHhhhccchHHHHHHHHHHHhhcCCCCCHHHHHHHHHHcCHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999994 78899999999
Q ss_pred hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhc
Q 040099 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNA 1199 (1236)
Q Consensus 1120 lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~a 1199 (1236)
.|+||+|.+||+|.+|||||||||||||+||+|.|++||||||.+||++||++|.+.|.+..+++|+|+||||+..++.|
T Consensus 460 ~p~gl~t~lge~G~~LSGGE~rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le~~ 539 (573)
T COG4987 460 APDGLNTWLGEGGRRLSGGERRRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM 539 (573)
T ss_pred ChhhhhchhccCCCcCCchHHHHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHhhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1200 HLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1200 D~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
|||+|||+|+++|+|+|++|+++ +|.|++|++.
T Consensus 540 drIivl~~Gkiie~G~~~~Ll~~-~g~~~~l~q~ 572 (573)
T COG4987 540 DRIIVLDNGKIIEEGTHAELLAN-NGRYKRLYQL 572 (573)
T ss_pred CEEEEEECCeeeecCCHHhhhcc-ccHHHHHhcc
Confidence 99999999999999999999996 9999999863
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-76 Score=734.15 Aligned_cols=549 Identities=28% Similarity=0.408 Sum_probs=468.3
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 754 (1236)
+++++.+.++.+..+.+.++++++..++....++++..+++...... ....+...++++.++..+..++..+...
T Consensus 7 ~~~l~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~iid~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (588)
T PRK13657 7 YARVLQYLGAEKRLGILLAVANVLLAAATFAEPILFGRIIDAISGKG-----DIFPLLAAWAGFGLFNIIAGVLVARHAD 81 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555666666777777777777777777788888887654321 1111222233333333333333344444
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834 (1236)
Q Consensus 755 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~ 834 (1236)
+...++..+++.++|+++++.|..+|+ +.++|++++|+++|++.+...+...+...+..++..++.+++++.++|.++
T Consensus 82 ~~~~~~~~~l~~~l~~~l~~~~~~~~~--~~~~g~~~~~~~~di~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 159 (588)
T PRK13657 82 RLAHRRRLAVLTEYFERIIQLPLAWHS--QRGSGRALHTLLRGTDALFGLWLEFMREHLATLVALVVLLPLALFMNWRLS 159 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCHHHHC--cCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455555566777999999999999998 478999999999999999988888888888888888888888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 835 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
+++++++|+.+++..+..+..++..++..+...+..+.+.|.++|+++||+|+.++++.++|.+..++..+...+.....
T Consensus 160 l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (588)
T PRK13657 160 LVLVVLGIVYTLITTLVMRKTKDGQAAVEEHYHDLFAHVSDAIGNVSVVQSYNRIEAETQALRDIADNLLAAQMPVLSWW 239 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888887777777888888889999999999999999999999999999999999988888888777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
.....+..++..+..++++++|++++..|.+++|+++++..++.....++..+...+..+..+..+.+++.++++.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~a~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~~~~~ 319 (588)
T PRK13657 240 ALASVLNRAASTITMLAILVLGAALVQKGQLRVGEVVAFVGFATLLIGRLDQVVAFINQVFMAAPKLEEFFEVEDAVPDV 319 (588)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccc
Confidence 77777788888888889999999999999999999999999999999999999999999999999999999998765432
Q ss_pred CCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 995 ~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
+.... ....+...+.|+++||+|+||++ .++|+|+||+++|||++||||+||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~I~~~~vsf~y~~~--~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g 396 (588)
T PRK13657 320 RDPPG-AIDLGRVKGAVEFDDVSFSYDNS--RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDG 396 (588)
T ss_pred CCCCC-CCCcCCCCCeEEEEEEEEEeCCC--CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECC
Confidence 21111 11112234679999999999853 3599999999999999999999999999999999999999999999999
Q ss_pred eecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhH
Q 040099 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1075 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ 1139 (1236)
+|+++++.+++|++|+||||||.+|+|||||||. +.+++++++.++|+|+||.+|++|.+|||||
T Consensus 397 ~~i~~~~~~~~r~~i~~v~Q~~~lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~i~~~g~~LSgGq 476 (588)
T PRK13657 397 TDIRTVTRASLRRNIAVVFQDAGLFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTVVGERGRQLSGGE 476 (588)
T ss_pred EEhhhCCHHHHHhheEEEecCcccccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999995 5678889999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
||||||||||+++|+|||||||||+||++||+.+.+.|++..+++|+|+||||+++++.||+|++|++|+++|.|+|++|
T Consensus 477 ~QRialARall~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~~~~D~ii~l~~G~i~~~g~~~~l 556 (588)
T PRK13657 477 RQRLAIARALLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSFDEL 556 (588)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 99999999999999999999999999999999999999998789999999999999999999999999999999999999
Q ss_pred hhccCcccHHhhhcc
Q 040099 1220 ISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1220 l~~~~g~y~~L~~~q 1234 (1236)
+++ ++.|++|++.+
T Consensus 557 ~~~-~~~y~~l~~~~ 570 (588)
T PRK13657 557 VAR-GGRFAALLRAQ 570 (588)
T ss_pred HHC-CChHHHHHHHh
Confidence 986 89999998754
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-76 Score=727.29 Aligned_cols=536 Identities=19% Similarity=0.151 Sum_probs=454.3
Q ss_pred cchHHHHHHhhc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFAD-LLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASF 122 (1236)
Q Consensus 44 ~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (1236)
+..+++++++++ ++++ .++++++++++.++.....|++++.++|..... .. .. ...++++.++.+++.+
T Consensus 2 ~~~~~~l~~~~~~~~~~-~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~-~~----~~----~~~~~~~~~~~~~~~~ 71 (555)
T TIGR01194 2 KAAIGEILALLRSPFPA-ITAFSIALGLAGGLAIIALLASINNAIHEENFL-GQ----GS----LFSFGGLCLLALLFRI 71 (555)
T ss_pred CchHHHHHHHHhhccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc-cc----hH----HHHHHHHHHHHHHHHH
Confidence 345788889888 7755 456667777777777777888888888742111 00 01 1123344556677889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 123 FQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFF 202 (1236)
Q Consensus 123 ~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1236)
+..++....+.++..++|.++|+|++++|+.||++. ++|++++|+++|++.+++++.. ++.++..+++++++++++++
T Consensus 72 ~~~~~~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~~-~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~ 149 (555)
T TIGR01194 72 GADIFPAYAGMHIIANLRIALCEKILGAPIEEIDRR-GAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAY 149 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHhc-CcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 9999999999999999999865 77888888889999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH--HHHHHHHHHHHHHHHH
Q 040099 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQ--QASSIYNKCLVKSYKS 280 (1236)
Q Consensus 203 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~--~~~~~~~~~~~~~~~~ 280 (1236)
++|.+++++++++|+.+++..++.++.++..++.++..+++++.+.|.+.|++++|+|+.++ .+.++|++..++..+.
T Consensus 150 ~~~~L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~ 229 (555)
T TIGR01194 150 LSVPMFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADL 229 (555)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHH
Confidence 99999999999999988888888888888899999999999999999999999999999954 5678899988888888
Q ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 281 SVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFE 360 (1236)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~ 360 (1236)
..+.........++..++..+..++++++|++. |.+|+|++++|+.++.....|+..++..+..++++.++++|+.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ 306 (555)
T TIGR01194 230 HIIEILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLAD 306 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777666666555555555555555566666654 78999999999999999999999999999999999999999999
Q ss_pred HhccCCC--cc-c-cccCCC---CCCCCCCcEEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHH
Q 040099 361 AINRKPE--ID-L-CCVNGK---KLDDIRGDIELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVIS 431 (1236)
Q Consensus 361 ~l~~~~~--~~-~-~~~~~~---~~~~~~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ 431 (1236)
+++.+++ .. + +..... ++....+.|+++||+|+|++.+ ++++|+|+||++++||++|||||||||||||++
T Consensus 307 ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ 386 (555)
T TIGR01194 307 FGERFNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAK 386 (555)
T ss_pred HHhhhccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHH
Confidence 9863211 11 0 000000 1112246799999999997532 236999999999999999999999999999999
Q ss_pred HHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCC
Q 040099 432 LIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQ 511 (1236)
Q Consensus 432 ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~ 511 (1236)
+|+|+|+|++|+|.+||+|+++++.+++|++++||+||+++|++|+++|+ .+++++++++++++.+++++++.++|+
T Consensus 387 ll~g~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~---~~~~~~~~~~~~~~~~~l~~~~~~lp~ 463 (555)
T TIGR01194 387 LFCGLYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDE---GEHASLDNAQQYLQRLEIADKVKIEDG 463 (555)
T ss_pred HHhCCCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhccc---ccchhHHHHHHHHHHcCCchhhccccc
Confidence 99999999999999999999999999999999999999999999999995 466788999999999999999999999
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHH-HH-ccCceEEEEecCchhHhhcC
Q 040099 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALD-RV-MINRTTVIVSHRLSLIRNAN 589 (1236)
Q Consensus 512 g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~-~~-~~~~t~i~itH~~~~~~~ad 589 (1236)
||||. .+|||||||||+||||++++|+|||||||||+||+++++.+.+.+. .+ .+++|+|+||||+++++.||
T Consensus 464 g~~t~-----~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d 538 (555)
T TIGR01194 464 GFSTT-----TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELAD 538 (555)
T ss_pred ccCCc-----ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCC
Confidence 99995 6899999999999999999999999999999999999999988764 34 35899999999999999999
Q ss_pred eEEEEECCEEEEE
Q 040099 590 IIAVIQQGKIVEK 602 (1236)
Q Consensus 590 ~i~vl~~G~i~~~ 602 (1236)
+|++|++|+++|.
T Consensus 539 ~i~~l~~G~i~~~ 551 (555)
T TIGR01194 539 QIIKLAAGCIVKD 551 (555)
T ss_pred EEEEEECCEEEEe
Confidence 9999999999864
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-75 Score=728.44 Aligned_cols=549 Identities=28% Similarity=0.404 Sum_probs=471.7
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFA 754 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 754 (1236)
+++++.+.+++++.+++.++++++..++.+..+++++.+++....... ...+...++++.++..+..++..+...
T Consensus 7 ~~~l~~~l~~~k~~~~~~~~~~~~~~~~~~~~p~~~~~iid~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (585)
T TIGR01192 7 YVRALSYLNVHKNRVLLIVIANITLAAITIAEPILFGRIIDAISSKSD-----VLPTLALWAGFGVFNTIAYVLVAREAD 81 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-----HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666666777778888888888888888888899988886543211 111222222233333344444444445
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 755 VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLA 834 (1236)
Q Consensus 755 ~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~ 834 (1236)
....++..++|.++|++++++|++||++ +++|++++|+++|++.+...+...+..++..++.+++.+++++.++|.++
T Consensus 82 ~~~~~~~~~lr~~~~~~l~~l~~~~~~~--~~~g~~~s~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 159 (585)
T TIGR01192 82 RLAHGRRATLLTEAFGRIISMPLSWHQQ--RGTSNALHTLLRATETLFGLWLEFMRQHLATFVALFLLIPTAFAMDWRLS 159 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCHHHhCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555666677779999999999999984 78999999999999999999988888888888888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 835 LLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 835 lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
+++++++|+.+++..+..++.++..++.....++..+.+.|+++|+++||+|+.++.+.++|.+..++..+...+.....
T Consensus 160 li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (585)
T TIGR01192 160 IVLMVLGILYILIAKLVMQRTKNGQAAVEHHYHNVFKHVSDSISNVSVVHSYNRIEAETSALKQFTNNLLSAQYPVLDWW 239 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988888888888877777777888888999999999999999999999999999999998888877777777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
++...+...+..+..++++++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++.+.+++.
T Consensus 240 ~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~it~g~l~a~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~ri~~~~~~~~~~ 319 (585)
T TIGR01192 240 ALASGLNRMASTISMMCILVIGTVLVIKGELSVGEVIAFIGFANLLIGRLDQMSGFITQIFEARAKLEDFFDLEDSVFQR 319 (585)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 77777777777788888899999999999999999999999999999999999999999999999999999998765433
Q ss_pred CCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 995 DSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 995 ~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
..... ....+...+.|+++||+|+|+++ .++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+|++||
T Consensus 320 ~~~~~-~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g 396 (585)
T TIGR01192 320 EEPAD-APELPNVKGAVEFRHITFEFANS--SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDG 396 (585)
T ss_pred cCCcc-CCCCCCCCCeEEEEEEEEECCCC--CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECC
Confidence 21111 01112234679999999999853 3589999999999999999999999999999999999999999999999
Q ss_pred eecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhH
Q 040099 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1075 ~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ 1139 (1236)
+|+++++.+.+|+++++|||||.+|++||+|||. +.+++++++.++|+|+||.+|++|.+|||||
T Consensus 397 ~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~a~~~~~~~~~i~~l~~g~~t~~~~~~~~LSgGq 476 (585)
T TIGR01192 397 IDINTVTRESLRKSIATVFQDAGLFNRSIRENIRLGREGATDEEVYEAAKAAAAHDFILKRSNGYDTLVGERGNRLSGGE 476 (585)
T ss_pred EEhhhCCHHHHHhheEEEccCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhccccccchhcCCCCCCCHHH
Confidence 9999999999999999999999999999999994 4467788999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHH
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
||||+|||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|
T Consensus 477 ~qrl~lARall~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~~~d~i~~l~~G~i~~~g~~~~l 556 (585)
T TIGR01192 477 RQRLAIARAILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSFQEL 556 (585)
T ss_pred HHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHHcCCEEEEEECCEEEEECCHHHH
Confidence 99999999999999999999999999999999999999998889999999999999999999999999999999999999
Q ss_pred hhccCcccHHhhhcc
Q 040099 1220 ISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1220 l~~~~g~y~~L~~~q 1234 (1236)
+++ +|.|+++++.|
T Consensus 557 ~~~-~~~y~~l~~~~ 570 (585)
T TIGR01192 557 IQK-DGRFYKLLRRS 570 (585)
T ss_pred HHC-CChHHHHHHhC
Confidence 996 89999999866
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-78 Score=701.78 Aligned_cols=475 Identities=29% Similarity=0.457 Sum_probs=371.7
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC----CcEEEECCeecCCCCHHH
Q 040099 384 DIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ----AGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~----~G~i~~~g~~~~~~~~~~ 458 (1236)
-++++|++..|....+ .++++||||+|.+||++||||+|||||||+++.|+|+.++. +|+|.++|.|+..++.+.
T Consensus 5 lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~~ 84 (539)
T COG1123 5 LLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSERE 84 (539)
T ss_pred eEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHHH
Confidence 4899999999975422 35999999999999999999999999999999999999987 899999999998887765
Q ss_pred H---h-cceEEEccCCC-CCch--hHHHHHh----cCCCCC---CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 459 I---R-EKIGLVSQEPV-LLSS--SIRDNIA----YGKTHA---TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 459 ~---r-~~i~~v~Q~~~-l~~~--ti~~ni~----~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
+ | +.|+||||+|. .+|. ||.+-|. ...... ..++..+.++.+++.+-... ...++.|
T Consensus 85 ~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~h~~~~~~ea~~~a~elL~~Vgl~~~~~~---------~~yPheL 155 (539)
T COG1123 85 MRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRLHGKGSRAEARKRAVELLEQVGLPDPERR---------DRYPHQL 155 (539)
T ss_pred HHHhccccEEEEecCchhhcCchhhHHHHHHHHHHHhccccHHHHHHHHHHHHHHcCCCChhhh---------ccCCccc
Confidence 4 3 57999999985 4443 6655554 222111 12334444555544332222 3466799
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEE
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
|||||||+.||+||+.+|++||+||||++||+.++++|.+.|+++. .|.++|+|||++..+.. ||||+||++|+++|
T Consensus 156 SGG~rQRv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE 235 (539)
T COG1123 156 SGGMRQRVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVE 235 (539)
T ss_pred CchHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEE
Confidence 9999999999999999999999999999999999999999999986 47899999999999876 99999999999999
Q ss_pred EeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhh
Q 040099 602 KGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYL 681 (1236)
Q Consensus 602 ~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 681 (1236)
.|+.+++++++...|.+..-.... .
T Consensus 236 ~G~~~~i~~~p~hpYT~~Ll~a~p----------~--------------------------------------------- 260 (539)
T COG1123 236 TGPTEEILSNPQHPYTRGLLAAVP----------R--------------------------------------------- 260 (539)
T ss_pred ecCHHHHHhccCCcccHHHHhhCC----------C---------------------------------------------
Confidence 999999998876666543210000 0
Q ss_pred cCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 682 NSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLI 761 (1236)
Q Consensus 682 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 761 (1236)
T Consensus 261 -------------------------------------------------------------------------------- 260 (539)
T COG1123 261 -------------------------------------------------------------------------------- 260 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040099 762 KRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIF 841 (1236)
Q Consensus 762 ~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~ 841 (1236)
.+.....
T Consensus 261 ------------------~~~~~~~------------------------------------------------------- 267 (539)
T COG1123 261 ------------------LGDEKII------------------------------------------------------- 267 (539)
T ss_pred ------------------ccccccc-------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Q 040099 842 PLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLS 921 (1236)
Q Consensus 842 pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 921 (1236)
T Consensus 268 -------------------------------------------------------------------------------- 267 (539)
T COG1123 268 -------------------------------------------------------------------------------- 267 (539)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCcccc
Q 040099 922 FFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTG 1001 (1236)
Q Consensus 922 ~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~ 1001 (1236)
.......
T Consensus 268 -------------------------------------------------------------------~~~~~~~------ 274 (539)
T COG1123 268 -------------------------------------------------------------------RLPRRGP------ 274 (539)
T ss_pred -------------------------------------------------------------------ccccccc------
Confidence 0000000
Q ss_pred CccCCccccEEEeEEEEECCCC--------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1002 RTLENVMGEVQFLRVSFKYPTR--------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1002 ~~~~~~~g~I~f~~Vsf~Y~~~--------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.....-++++|++.+|..+ ....+++||||+|++||++||||+||||||||.++|+|+++|++|+|.++
T Consensus 275 ---~~~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~ 351 (539)
T COG1123 275 ---LRAEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFD 351 (539)
T ss_pred ---cccCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEe
Confidence 0001137788999999742 12468999999999999999999999999999999999999999999999
Q ss_pred Cee--cccCChHHHhcceEEEcCCCCCC---hhhHHHHHHHHhhhch---------HHHhhh--hchhh-hhcCCCCCCC
Q 040099 1074 GVE--IQKLQVKWLRQQMGVVSQEPVLF---SDTIRANIAEMANANG---------FISGLQ--EGYDT-LVGERGVQLS 1136 (1236)
Q Consensus 1074 G~d--i~~i~~~~lR~~i~~V~Qdp~LF---~gTIreNL~~~a~~~~---------~i~~lp--~Gldt-~vge~G~~LS 1136 (1236)
|.| .+.-+...+|+++-+|+|||+-. ..||+++|.+-...+. -+..+= -|+.. .+......||
T Consensus 352 g~~~~~~~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~~l~ryP~elS 431 (539)
T COG1123 352 GQDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPEFLDRYPHELS 431 (539)
T ss_pred CcccccccchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHHHHhcCchhcC
Confidence 977 33334567888999999999632 3599999863322211 111110 13333 3556778999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEe
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~ 1213 (1236)
||||||+||||||..+|++||+|||||+||+-+.+.|.+.|+++.+ |.|.|+|||+++.++. ||||+||++|+|||.
T Consensus 432 GGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~ 511 (539)
T COG1123 432 GGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEE 511 (539)
T ss_pred cchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEe
Confidence 9999999999999999999999999999999999999999988754 6899999999999987 999999999999999
Q ss_pred cChhHHhhccCcccHHhh
Q 040099 1214 GSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1214 Gt~~eLl~~~~g~y~~L~ 1231 (1236)
|+.+++.+++...|.+..
T Consensus 512 G~~~~v~~~p~h~Ytr~L 529 (539)
T COG1123 512 GPTEKVFENPQHPYTRKL 529 (539)
T ss_pred CCHHHHhcCCCChHHHHH
Confidence 999999998888887754
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-76 Score=727.88 Aligned_cols=507 Identities=22% Similarity=0.300 Sum_probs=435.3
Q ss_pred HhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 678 LAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHW--ALMFVALGAASLLTSPLSMYCFAV 755 (1236)
Q Consensus 678 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~~~~~~ 755 (1236)
++.+.+++++.+++.++++++..++....+++++.+++....... ....+ ...++++.++..++.++..++...
T Consensus 4 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (529)
T TIGR02868 4 ILPLLQPRTRRLVVAILLGALALGSAVALLGVSAWLISRAAEMPP----VLYLSVAAVAVRAFGIGRAVFRYLERLVGHD 79 (529)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcch----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555666666777777777777777777778887775432111 11111 111223445566777888888889
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040099 756 AGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLAL 835 (1236)
Q Consensus 756 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~l 835 (1236)
.+.++..++|.++|++++++|.+||+ ++++|++++|+++|++.++..+...+..++..++.+++.++++++++|.+++
T Consensus 80 ~~~~~~~~lr~~~~~~ll~~~~~~~~--~~~~g~~~~~l~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~l 157 (529)
T TIGR02868 80 AALRSLGRLRVRVYDRLARLALAGRR--RFQTGDLLGRLGADVDALQDLYVRVIVPLVVALVVGSAAVAAIALLSVPAAL 157 (529)
T ss_pred HHHHHHHHHHHHHHHHhhccCccccc--cCChhhHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence 99999999999999999999999998 4789999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 040099 836 LVLAIFPLLGITG-HIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMS 914 (1236)
Q Consensus 836 v~l~~~pl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 914 (1236)
++++.+|++.++. .+..+..+...++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+.....
T Consensus 158 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (529)
T TIGR02868 158 VLAAGLLLAGFVAPLVSLRAARAAEVALARLRSQLYQQLTDALDGAADLVAYGALDPALAQVEAADRELLAAERRAARAT 237 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhccHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9998888876655 444444455566677777888999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 040099 915 GIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKI 994 (1236)
Q Consensus 915 ~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~ 994 (1236)
.....+..++..+..++++++|++++..|.++.|.++++..+......++..+...+..+..+..+.+|+.++++.+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~t~g~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~ 317 (529)
T TIGR02868 238 GLGAAAQLLAAGLAVLGALWAGGPAVADGTLAPATLAVLVLLPLAAFEAFAPLPAAAQALTRVRAAAERIEEVTGAKGPR 317 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999876543
Q ss_pred CCCccc-cCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 995 DSSEYT-GRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 995 ~~~~~~-~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
+..+.. ....++..++|+|+||+|+|+++ +++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++|
T Consensus 318 ~~~~~~~~~~~~~~~~~I~~~~vsf~Y~~~--~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~ 395 (529)
T TIGR02868 318 PEGVVPAAGALGLGKPTLELRDLSFGYPGS--PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLD 395 (529)
T ss_pred CCCCCCCCcccCCCCceEEEEEEEEecCCC--CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEEC
Confidence 221111 11112234679999999999854 359999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChh
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGG 1138 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGG 1138 (1236)
|+|++++ .+++|++|+||||||+||+|||||||. +.+++++++.++|+||||.+||+|.+||||
T Consensus 396 g~~i~~~-~~~lr~~i~~V~Q~~~lF~~TI~eNI~~g~~~~~~e~i~~al~~a~l~~~i~~lp~GldT~ige~G~~LSGG 474 (529)
T TIGR02868 396 GVSVSSL-QDELRRRISVFAQDAHLFDTTVRDNLRLGRPDATDEELWAALERVGLADWLRSLPDGLDTVLGEGGARLSGG 474 (529)
T ss_pred CEEhhhH-HHHHHhheEEEccCcccccccHHHHHhccCCCCCHHHHHHHHHHcCCHHHHHhCcccccchhccccCcCCHH
Confidence 9999999 999999999999999999999999994 678899999999999999999999999999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCc
Q 040099 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193 (1236)
Q Consensus 1139 QrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl 1193 (1236)
||||||||||+++||+|||||||||+||++||+.|++.|++..+++|+|+||||+
T Consensus 475 QrQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 475 ERQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 9999999999999999999999999999999999999999988899999999996
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-76 Score=728.51 Aligned_cols=524 Identities=26% Similarity=0.385 Sum_probs=456.4
Q ss_pred HHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccc
Q 040099 703 IPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDE 782 (1236)
Q Consensus 703 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~ 782 (1236)
....+++++.+++........ ......|..+++++.++..++.+++.+.....+.+...++|.++|++++++|++||+
T Consensus 11 ~~~~p~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~- 88 (569)
T PRK10789 11 QLIPPKVVGIIVDGVTEQHMT-TGQILMWIGTMVLIAVVVYLLRYVWRVLLFGASYQLAVELREDFYRQLSRQHPEFYL- 88 (569)
T ss_pred HHHHHHHHHHHHHHhccCCcc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHc-
Confidence 334455666666654322111 112233445555555566677778888888899999999999999999999999998
Q ss_pred cCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040099 783 ADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIA-FKACWQLALLVLAIFPLLGITGHIQMKSMKGFSAN 861 (1236)
Q Consensus 783 ~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~-~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~ 861 (1236)
++++|++++|+++|++.++..+...+..++..++..++.++++ ++++|.+++++++++|+.+++..+..++.++..++
T Consensus 89 -~~~~g~i~srl~~Dv~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~ 167 (569)
T PRK10789 89 -RHRTGDLMARATNDVDRVVFAAGEGVLTLVDSLVMGCAVLIVMSTQISWQLTLLALLPMPVMAIMIKRYGDQLHERFKL 167 (569)
T ss_pred -CCCHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4789999999999999999888787877777766666665555 57999999999999999988888888888777778
Q ss_pred HHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 862 AENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVD 941 (1236)
Q Consensus 862 ~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~ 941 (1236)
.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+..........+......+..++++++|++++.
T Consensus 168 ~~~~~~~~~~~~~e~l~~i~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~lv~ 247 (569)
T PRK10789 168 AQAAFSSLNDRTQESLTSIRMIKAFGLEDRQSALFAADAEDTGKKNMRVARIDARFDPTIYIAIGMANLLAIGGGSWMVV 247 (569)
T ss_pred HHHHHHHHHHHHHHHHcChHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888889999999999999999999999999999999999888888877777777777777777778888899999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECC
Q 040099 942 HKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYP 1021 (1236)
Q Consensus 942 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~ 1021 (1236)
.|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.+... ...+...+.|+|+||+|+|+
T Consensus 248 ~g~lt~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~ll~~~~~~~~~~---~~~~~~~~~I~~~~v~~~y~ 324 (569)
T PRK10789 248 NGSLTLGQLTSFVMYLGLMIWPMLALAWMFNIVERGSAAYSRIRAMLAEAPVVKDGS---EPVPEGRGELDVNIRQFTYP 324 (569)
T ss_pred cCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccCCC---CCCCCCCCcEEEEEEEEECC
Confidence 999999999999999999999999999999999999999999999998654332111 11223356899999999998
Q ss_pred CCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh
Q 040099 1022 TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1022 ~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1101 (1236)
.. +.++|+|+||+|+|||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++|+++++|||+|++|++
T Consensus 325 ~~-~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ 403 (569)
T PRK10789 325 QT-DHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQLDSWRSRLAVVSQTPFLFSD 403 (569)
T ss_pred CC-CCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCHHHHHhheEEEccCCeeccc
Confidence 53 34699999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040099 1102 TIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166 (1236)
Q Consensus 1102 TIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD 1166 (1236)
||||||. +.+++++++.++|+|+||.+|++|.+||||||||++||||++++|+|||||||||+||
T Consensus 404 ti~~Ni~~~~~~~~~~~~~~~~~~~~l~~~i~~lp~gl~t~~~~~g~~LSgGq~qRi~lARall~~~~illlDEpts~LD 483 (569)
T PRK10789 404 TVANNIALGRPDATQQEIEHVARLASVHDDILRLPQGYDTEVGERGVMLSGGQKQRISIARALLLNAEILILDDALSAVD 483 (569)
T ss_pred cHHHHHhcCCCCCCHHHHHHHHHHcCCHHHHHhCcCcccceecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECccccCC
Confidence 9999994 4567888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1167 IESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1167 ~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
+++++.+.+.|++..+++|+|+||||++++..||+|++|++|+++|.|+|++|+++ +|.|++|++.|
T Consensus 484 ~~~~~~i~~~l~~~~~~~tii~itH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~y~~l~~~~ 550 (569)
T PRK10789 484 GRTEHQILHNLRQWGEGRTVIISAHRLSALTEASEILVMQHGHIAQRGNHDQLAQQ-SGWYRDMYRYQ 550 (569)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEEecchhHHHcCCEEEEEeCCEEEEecCHHHHHHc-CChHHHHHHHh
Confidence 99999999999998889999999999999999999999999999999999999986 89999999765
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-75 Score=730.97 Aligned_cols=553 Identities=33% Similarity=0.504 Sum_probs=478.9
Q ss_pred HHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 677 RLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVA 756 (1236)
Q Consensus 677 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 756 (1236)
.++.+.++.++.+.+.++++++.+++....++++..+++....... ......+..+++++.++..++.+++.+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (576)
T TIGR02204 8 ALWPFVRPYRGRVLAALVALLITAAATLSLPYAVRLMIDHGFSKDS--SGLLNRYFAFLLVVALVLALGTAARFYLVTWL 85 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccccc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555666667777777777777778888888876432211 11122233444444555566777888888999
Q ss_pred HHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 040099 757 GCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALL 836 (1236)
Q Consensus 757 ~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv 836 (1236)
+.++...+|..+++++++.|.++|++ .++|++++|+++|++.+++++...+..++..++.+++.+++++.++|.++++
T Consensus 86 ~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (576)
T TIGR02204 86 GERVVADIRRAVFAHLISLSPSFFDK--NRSGEVVSRLTTDTTLLQSVIGSSLSMALRNALMCIGGLIMMFITSPKLTSL 163 (576)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHcc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999999999999984 7799999999999999999999999898999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040099 837 VLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGI 916 (1236)
Q Consensus 837 ~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1236)
+++..|+.++...+..++.++..++..+...+..+.+.|.++|+++||+++.++++.++|.+..++..+...+.......
T Consensus 164 ~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (576)
T TIGR02204 164 VLLAVPLVLLPILLFGRRVRKLSRESQDRIADAGSYAGETLGAIRTVQAFGHEDAERSRFGGAVEKAYEAARQRIRTRAL 243 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999988888888888888888888888888999999999999999999999999999999999888887777766666
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 040099 917 GFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDS 996 (1236)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 996 (1236)
...+...+..+..++++++|++++..|.++.|.++++..+..+...|+..+...+..+..+..+.+|+.++++.+++.+.
T Consensus 244 ~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~pl~~~~~~~~~~~~~~~~~~ri~~~l~~~~~~~~ 323 (576)
T TIGR02204 244 LTAIVIVLVFGAIVGVLWVGAHDVIAGKMSAGTLGQFVFYAVMVAGSIGTLSEVWGELQRAAGAAERLIELLQAEPDIKA 323 (576)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcCCC
Confidence 66666666667777888999999999999999999999999999999999999999999999999999999886544221
Q ss_pred CccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 997 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
.........+..+.|+|+||+|+||++++.++|+|+||+|+|||++||+|+||||||||+++|+|+|+|++|+|++||+|
T Consensus 324 ~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~ 403 (576)
T TIGR02204 324 PAHPKTLPVPLRGEIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVD 403 (576)
T ss_pred CCCCccCCcCCCceEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEE
Confidence 11111111123457999999999986433579999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHH
Q 040099 1077 IQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1077 i~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQ 1141 (1236)
+++++.+++|++|+||||||++|+|||||||. +.+++++++.++|+|+||.+|++|.+|||||||
T Consensus 404 i~~~~~~~~~~~i~~~~Q~~~lf~~Ti~~Ni~~~~~~~~~~~~~~~l~~~~l~~~i~~l~~gl~t~i~~~g~~LSgGq~Q 483 (576)
T TIGR02204 404 LRQLDPAELRARMALVPQDPVLFAASVMENIRYGRPDATDEEVEAAARAAHAHEFISALPEGYDTYLGERGVTLSGGQRQ 483 (576)
T ss_pred HHhcCHHHHHHhceEEccCCccccccHHHHHhcCCCCCCHHHHHHHHHHcCcHHHHHhCCCCCCceeCCCCCcCCHHHHH
Confidence 99999999999999999999999999999995 456788899999999999999999999999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||+||||++++|+|||||||||+||++|++.+.+.|++..+++|+|+||||++.+..||+|++|++|+++|.|+|++|++
T Consensus 484 rl~laRal~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~~~~d~vi~l~~g~~~~~g~~~~l~~ 563 (576)
T TIGR02204 484 RIAIARAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATVLKADRIVVMDQGRIVAQGTHAELIA 563 (576)
T ss_pred HHHHHHHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEEEEECCEEEeeecHHHHHH
Confidence 99999999999999999999999999999999999999888999999999999999999999999999999999999998
Q ss_pred ccCcccHHhhhcc
Q 040099 1222 TKNGIYTSLIEPH 1234 (1236)
Q Consensus 1222 ~~~g~y~~L~~~q 1234 (1236)
+ ++.|++|++.|
T Consensus 564 ~-~~~~~~l~~~~ 575 (576)
T TIGR02204 564 K-GGLYARLARLQ 575 (576)
T ss_pred c-CChHHHHHhhc
Confidence 6 89999999876
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-77 Score=658.51 Aligned_cols=477 Identities=34% Similarity=0.462 Sum_probs=418.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
Q 040099 751 YCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVV-GLVIAFKA 829 (1236)
Q Consensus 751 ~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~-~~ii~~~~ 829 (1236)
.++..+++.+.+.+-.+.|.|+.++++.|.-+ ..+|.+...+..-...++..+...+..++..++-+.. +.++...+
T Consensus 4 ~~fs~v~q~a~r~la~~~F~h~~~Lsl~fHl~--r~TGglsR~ierGtkgI~~i~~~~l~~i~P~~~Ei~l~~vi~~~~~ 81 (497)
T COG5265 4 RLFSPVGQIAVRVLAYVTFFHLHSLSLRFHLE--RRTGGLSRAIERGTKGIETILRWILFNILPTLVEISLVAVILWRVY 81 (497)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHhcchhhhhh--cccCceeeHhhcCcccHHHHHHHHHHHhhHHHHHHHHHHHHHHhhc
Confidence 45667788888899999999999999999874 5677776666666666666666666666665554444 34445568
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHH
Q 040099 830 CWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909 (1236)
Q Consensus 830 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1236)
+|+.+++.++++.+.+++.....-......+..+++..++++...+++-+.+|+|.|+.|+++..+|.+.++.+.++..+
T Consensus 82 ~~~f~~~t~vtv~lY~~ftv~~s~wr~~~rr~~n~aDs~a~~~aidsLlnfEtvk~F~ne~~e~~r~~~~~~~Y~~a~~k 161 (497)
T COG5265 82 GWWFALTTLVTVILYLLFTVIVSDWRTDFRRLMNNADSDANAKAIDSLLNFETVKYFGNEEYEAVRYDHALETYEKAAIK 161 (497)
T ss_pred ccHHHHHHHHHHHHHHHhheeehhhhHHHHHhhhhhhhHHHHHHHHHHhhhhheeecCchhhhhhhcCchHHHHHHHHHH
Confidence 99999999888888777766555555566778888899999999999999999999999999999999999999998887
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLID 989 (1236)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 989 (1236)
.+.--.+.......++.....++...+...+..|.+|.|+++....++.....|+..++....++.++...+++++++++
T Consensus 162 ~~~Sl~~Ln~gQ~~I~~~~l~~~m~~s~~~v~~g~~TvgD~V~~Nall~qls~Plnflg~~Yrei~q~ltdme~mfdLl~ 241 (497)
T COG5265 162 VHVSLLVLNFGQTAIFSTGLRVMMTMSALGVEEGQLTVGDLVNVNALLFQLSIPLNFLGFSYREIRQALTDMEKMFDLLD 241 (497)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhhcHHHHhhccCCchhHHhHHHHHhhhhhhhhhhHHHHHHHHHhhhhHHHHHHhhc
Confidence 76665555555566667777788888888999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE
Q 040099 990 QVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069 (1236)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~ 1069 (1236)
.+.+........+-.+-..|.|.|+||+|.|.++ .++|+|+||++++|+++||||+||+||||+.++|+||||+++|.
T Consensus 242 ~~~~v~d~pda~~L~~~~~g~v~F~~V~F~y~~~--r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~ 319 (497)
T COG5265 242 VEAEVSDAPDAPPLWPVRLGAVAFINVSFAYDPR--RPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGS 319 (497)
T ss_pred cchhhccCCCCccccccccceEEEEEEEeecccc--chhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCce
Confidence 7766543322111111346889999999999754 57999999999999999999999999999999999999999999
Q ss_pred EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCC
Q 040099 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQ 1134 (1236)
Q Consensus 1070 I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~ 1134 (1236)
|.|||+||+++..+++|+.||+||||..||++|+..|+. +.|++++||+++|+||||.|||+|-.
T Consensus 320 I~id~qdir~vtq~slR~aIg~VPQDtvLFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~Vgerglk 399 (497)
T COG5265 320 ITIDGQDIRDVTQQSLRRAIGIVPQDTVLFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLK 399 (497)
T ss_pred EEEcchhHHHhHHHHHHHHhCcCcccceehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcccchheee
Confidence 999999999999999999999999999999999999994 78999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
||||||||+||||++|++|+||+||||||+||..||++||.+|++..+++|.++|||||+||.+||.|+||++|+|+|.|
T Consensus 400 lSggekqrvaiar~ilk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~~adeiivl~~g~i~erg 479 (497)
T COG5265 400 LSGGEKQRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTIIDADEIIVLDNGRIVERG 479 (497)
T ss_pred ccCchHHHHHHHHHHhcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhccCCceEEEeeCCEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHhhccCcccHHhhh
Q 040099 1215 SHESLISTKNGIYTSLIE 1232 (1236)
Q Consensus 1215 t~~eLl~~~~g~y~~L~~ 1232 (1236)
+|+||+++ +|.|++||.
T Consensus 480 ~h~~ll~~-~g~ya~mw~ 496 (497)
T COG5265 480 THEELLAA-GGLYAEMWR 496 (497)
T ss_pred cHHHHHHc-CChHHHHhc
Confidence 99999997 999999995
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-73 Score=705.71 Aligned_cols=512 Identities=25% Similarity=0.331 Sum_probs=445.6
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 687 PALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRS 766 (1236)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 766 (1236)
+.+.++++++++.+++.+..+++.+.+++....+... ......+..++++++++..++.++..+...+.+.++..++|.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~iid~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 81 (529)
T TIGR02857 3 RALALLGLLGALGALLIIAQAWLLARVIDGLISAGEP-LAELLPALGALALAVLLRALLGWLGERAAARAAAAVKSQLRE 81 (529)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4455667777777788888888888888866321111 122334555566667777888999999999999999999999
Q ss_pred HHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040099 767 MCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGI 846 (1236)
Q Consensus 767 ~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~ 846 (1236)
++|+++++.|..||+ ++++|++++|+++|++.++..+...+..++..++.+++.+++++.++|.+++++++.+|+..+
T Consensus 82 ~l~~~l~~~~~~~~~--~~~~g~~~~~l~~di~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~l~~~~l~~~ 159 (529)
T TIGR02857 82 RLLAAVAALGPGWLQ--GRPSGELATLALEGVEALDGYFARYLPQLVLAVIIPLAILAAVFPADWISGLILLLTAPLIPI 159 (529)
T ss_pred HHHHHHHhCCchhhc--cCChHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 999999999999998 488999999999999999999999888888888888888999999999999999999998888
Q ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 847 TGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFF 926 (1236)
Q Consensus 847 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 926 (1236)
+..+..++.++..++..+..++..+.+.|+++|+++||+|+.++++.++|.+..++..+...+..........+..++..
T Consensus 160 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 239 (529)
T TIGR02857 160 FMILIGWAAQAAARKQWAALSRLSGHFLDRLRGLPTLKLFGRAKAQAAAIARSSEEYRERTMRVLRIAFLSSAVLELFAT 239 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777777777888888999999999999999999999999999999998888877777776666666666666
Q ss_pred HHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCC
Q 040099 927 MAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLEN 1006 (1236)
Q Consensus 927 ~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~ 1006 (1236)
+...+++.++++.+..|.+++|.++++..+......|+..+...+..+.++..+++|+.++++.+++..... ..++.
T Consensus 240 ~~~~~~~~~~~~~~~~g~~t~g~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~ll~~~~~~~~~~---~~~~~ 316 (529)
T TIGR02857 240 LSVALVAVYIGFRLLAGDLDLATGLFVLLLAPEFYLPLRQLGADYHARADGVAAAEALFAVLDAPRPLAGKA---PVTAA 316 (529)
T ss_pred HHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCCCc---CCCCC
Confidence 666666566667777999999999999888889999999999999999999999999999997543221111 11111
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHh
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR 1086 (1236)
..+.|+|+||+|+||++ ++++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|
T Consensus 317 ~~~~i~~~~v~f~y~~~-~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~~~lr 395 (529)
T TIGR02857 317 PAPSLEFSGLSVAYPGR-RAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADADSWR 395 (529)
T ss_pred CCCeEEEEEEEEECCCC-CcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCHHHHH
Confidence 23579999999999864 24699999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
++++||||||++|++||||||. +.++++++++++|+||||.+||+|.+||||||||++||||+++
T Consensus 396 ~~i~~v~Q~~~lf~~ti~~Ni~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~Gldt~v~e~g~~LSgGq~qri~laRal~~ 475 (529)
T TIGR02857 396 DQIAWVPQHPFLFAGTIAENIRLARPDASDAEIRRALERAGLDEFVAALPQGLDTLIGEGGAGLSGGQAQRLALARAFLR 475 (529)
T ss_pred hheEEEcCCCcccCcCHHHHHhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999984 5678899999999999999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
+|+|||||||||+||++||+.+++.|++..+++|+|+||||+++++.||+|+||
T Consensus 476 ~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~~d~i~~l 529 (529)
T TIGR02857 476 DAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALAERADRIVVL 529 (529)
T ss_pred CCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEeC
Confidence 999999999999999999999999999988899999999999999999999986
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-74 Score=719.71 Aligned_cols=491 Identities=25% Similarity=0.382 Sum_probs=363.7
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC----------
Q 040099 384 DIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK---------- 452 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~---------- 452 (1236)
-|+++|++++|+... +.++|+||||++++||++|||||||||||||+++|+|+++|++|+|.++|+++.
T Consensus 12 ~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~~~ 91 (623)
T PRK10261 12 VLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIELS 91 (623)
T ss_pred eEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccccc
Confidence 589999999996321 246999999999999999999999999999999999999999999999997552
Q ss_pred CCCHH---HHh-cceEEEccCC--CCCc-hhHHHHHhcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCCcccccc
Q 040099 453 EFQLK---WIR-EKIGLVSQEP--VLLS-SSIRDNIAYGKT---HATKE----EIQAAAEAANASHFIKNLPQGLDTNVG 518 (1236)
Q Consensus 453 ~~~~~---~~r-~~i~~v~Q~~--~l~~-~ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g 518 (1236)
+.+.. .+| ++||||+|+| .+++ .||+|||.++.. ..+.+ ++.++++..++.+ .+....
T Consensus 92 ~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~--------~~~~~~ 163 (623)
T PRK10261 92 EQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGASREEAMVEAKRMLDQVRIPE--------AQTILS 163 (623)
T ss_pred cCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCC--------hhhHHh
Confidence 12222 233 4799999998 5666 599999987521 12222 2333333333311 012345
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEE
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQ 595 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~ 595 (1236)
....+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. + |+|+|+|||+++.+.. ||||++|+
T Consensus 164 ~~~~~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~ 243 (623)
T PRK10261 164 RYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMY 243 (623)
T ss_pred CCCccCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEee
Confidence 5667999999999999999999999999999999999999999999999985 3 7899999999999865 99999999
Q ss_pred CCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchh
Q 040099 596 QGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSL 675 (1236)
Q Consensus 596 ~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 675 (1236)
+|+|++.|++++++..+...|.+-+.... . . . . . .
T Consensus 244 ~G~i~~~g~~~~~~~~~~~~~~~~l~~~~--~--------~--~------~---------~----------~-------- 278 (623)
T PRK10261 244 QGEAVETGSVEQIFHAPQHPYTRALLAAV--P--------Q--L------G---------A----------M-------- 278 (623)
T ss_pred CCeecccCCHHHhhcCCCChhhhhhhhcc--C--------c--c------c---------c----------c--------
Confidence 99999999988876542211211000000 0 0 0 0 0 0
Q ss_pred HHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 676 SRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAV 755 (1236)
Q Consensus 676 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 755 (1236)
...
T Consensus 279 -------------------------------------------~~~---------------------------------- 281 (623)
T PRK10261 279 -------------------------------------------KGL---------------------------------- 281 (623)
T ss_pred -------------------------------------------ccc----------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 040099 756 AGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLAL 835 (1236)
Q Consensus 756 ~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~l 835 (1236)
..+ .-++... . +
T Consensus 282 ------------------~~~-~~~~~~~--~---------~-------------------------------------- 293 (623)
T PRK10261 282 ------------------DYP-RRFPLIS--L---------E-------------------------------------- 293 (623)
T ss_pred ------------------cCC-ccccccc--c---------c--------------------------------------
Confidence 000 0000000 0 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHH
Q 040099 836 LVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSG 915 (1236)
Q Consensus 836 v~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 915 (1236)
.
T Consensus 294 ---------------------------------------------------------------------~---------- 294 (623)
T PRK10261 294 ---------------------------------------------------------------------H---------- 294 (623)
T ss_pred ---------------------------------------------------------------------c----------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC
Q 040099 916 IGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKID 995 (1236)
Q Consensus 916 ~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~ 995 (1236)
.. . ..+....
T Consensus 295 ---------------------------~~-----------------------------~--------------~~~~~~~ 304 (623)
T PRK10261 295 ---------------------------PA-----------------------------K--------------QEPPIEQ 304 (623)
T ss_pred ---------------------------cc-----------------------------c--------------cCccccc
Confidence 00 0 0000000
Q ss_pred CCccccCccCCccccEEEeEEEEECCCCC--------CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC
Q 040099 996 SSEYTGRTLENVMGEVQFLRVSFKYPTRP--------HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067 (1236)
Q Consensus 996 ~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~--------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~ 1067 (1236)
... +....-++++||++.|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+++|++
T Consensus 305 ~~~------~~~~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~ 378 (623)
T PRK10261 305 DTV------VDGEPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQG 378 (623)
T ss_pred ccc------cCCCceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCC
Confidence 000 00011489999999996321 1358999999999999999999999999999999999999999
Q ss_pred cEEEECCeecccCChH---HHhcceEEEcCCC--CCCh-hhHHHHHHHHhhh-------------chHHHhhhhchh-hh
Q 040099 1068 GHITLDGVEIQKLQVK---WLRQQMGVVSQEP--VLFS-DTIRANIAEMANA-------------NGFISGLQEGYD-TL 1127 (1236)
Q Consensus 1068 G~I~idG~di~~i~~~---~lR~~i~~V~Qdp--~LF~-gTIreNL~~~a~~-------------~~~i~~lp~Gld-t~ 1127 (1236)
|+|.++|.++...+.. .+|++|+||||+| .++. .||.||+...... .++++.+ |++ ..
T Consensus 379 G~I~~~g~~i~~~~~~~~~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~L~~~--gL~~~~ 456 (623)
T PRK10261 379 GEIIFNGQRIDTLSPGKLQALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVHGLLPGKAAAARVAWLLERV--GLLPEH 456 (623)
T ss_pred cEEEECCEECCcCCHHHHHHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHc--CCCHHH
Confidence 9999999999877543 4678899999998 3665 5999998632211 1122221 453 33
Q ss_pred hcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEE
Q 040099 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAV 1204 (1236)
Q Consensus 1128 vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~V 1204 (1236)
......+||||||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+|
T Consensus 457 ~~~~~~~LSgGqrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~v 536 (623)
T PRK10261 457 AWRYPHEFSGGQRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAV 536 (623)
T ss_pred hhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEE
Confidence 4566779999999999999999999999999999999999999999999988753 6899999999999976 999999
Q ss_pred EeCCEEEEecChhHHhhccCcccHH
Q 040099 1205 VSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1205 l~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|++|+|+|.|+++++..++...|.+
T Consensus 537 l~~G~iv~~g~~~~i~~~p~~~~~~ 561 (623)
T PRK10261 537 MYLGQIVEIGPRRAVFENPQHPYTR 561 (623)
T ss_pred EECCEEEEecCHHHHhcCCCCHHHH
Confidence 9999999999999998765555654
|
|
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-72 Score=693.19 Aligned_cols=523 Identities=21% Similarity=0.281 Sum_probs=446.9
Q ss_pred chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 685 EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRI 764 (1236)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 764 (1236)
+++.++..++++++..+.....++++..+++....... ......+..+++++.++..++.+++.++....+.++..++
T Consensus 4 ~k~~~~~~~~~~~~~~~~~l~~p~~~~~iid~~~~~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 81 (544)
T TIGR01842 4 NKSTFIIVGLFSFVINILMLAPPLYMLQVYDRVLTSGS--VPTLLMLTVLALGLYLFLGLLDALRSFVLVRIGEKLDGAL 81 (544)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCc--hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455556666666666666777778888875542111 1122334555555666677888889999999999999999
Q ss_pred HHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040099 765 RSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGD-TLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPL 843 (1236)
Q Consensus 765 r~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~-~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl 843 (1236)
|.++|+++++.|+.. .+...+++++|++.++..+.. .+..++..+..++ .++++++++|.+++++++..|+
T Consensus 82 r~~~~~~ll~~~~~~-------~~~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~l~li~l~~~~l 153 (544)
T TIGR01842 82 NQPIFAASFSATLRR-------GKIDGLQALRDLDQLRQFLTGPGLFAFFDAPWMPI-YLLVCFLLHPWIGILALGGAVV 153 (544)
T ss_pred HHHHHHHHhcCcccC-------ccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-HHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999843 245688899999999998877 4445555444444 4467788999999999888888
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 844 LGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFF 923 (1236)
Q Consensus 844 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 923 (1236)
++++..+..+..++..++.++..++..+.+.|+++|+++||+|+.++++.++|.+..++..+...+.....+....+...
T Consensus 154 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (544)
T TIGR01842 154 LVGLALLNNRATKKPLKEATEASIRANNLADSALRNAEVIEAMGMMGNLTKRWGRFHSKYLSAQSAASDRAGMLSNLSKY 233 (544)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhHHHHHHhcHHHHHHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 87777777777777777788888888999999999999999999999999999999999888888877777777777777
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCc
Q 040099 924 FFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRT 1003 (1236)
Q Consensus 924 ~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~ 1003 (1236)
+..+..++++++|++++..|.+++|.++++..+......|+..+...+..+..+..+.+|+.++++.+++.... ..
T Consensus 234 ~~~~~~~~~~~~g~~l~~~g~it~g~l~a~~~~~~~~~~pl~~l~~~~~~~~~~~~~~~ri~~~l~~~~~~~~~----~~ 309 (544)
T TIGR01842 234 FRIVLQSLVLGLGAYLAIDGEITPGMMIAGSILVGRALAPIDGAIGGWKQFSGARQAYKRLNELLANYPSRDPA----MP 309 (544)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCC----CC
Confidence 77778888899999999999999999999999999999999999999999999999999999999765443211 11
Q ss_pred cCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH
Q 040099 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1004 ~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~ 1083 (1236)
.+...+.|+++||+|+||+. +.++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 310 ~~~~~~~i~~~~v~~~y~~~-~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~~ 388 (544)
T TIGR01842 310 LPEPEGHLSVENVTIVPPGG-KKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDRE 388 (544)
T ss_pred CCCCCCeEEEEEEEEEcCCC-CccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCHH
Confidence 12234679999999999854 24699999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
.+|++++||||||++|++|++|||. +.++++++++++|+|+||.+|++|.+||||||||++||||
T Consensus 389 ~~~~~i~~v~q~~~lf~~ti~~Ni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~gl~t~~~~~g~~LSgGq~qrl~lARa 468 (544)
T TIGR01842 389 TFGKHIGYLPQDVELFPGTVAENIARFGENADPEKIIEAAKLAGVHELILRLPDGYDTVIGPGGATLSGGQRQRIALARA 468 (544)
T ss_pred HHhhheEEecCCcccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCccccccccCCCcCCCCHHHHHHHHHHHH
Confidence 9999999999999999999999994 4467789999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++++|+|||||||||+||+++++.+.+.|++.. +++|+|+||||++++..||+|++|++|+++|.|+|+||+++
T Consensus 469 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~ 543 (544)
T TIGR01842 469 LYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLLGCVDKILVLQDGRIARFGERDEVLAK 543 (544)
T ss_pred HhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc
Confidence 999999999999999999999999999999875 67999999999999999999999999999999999999763
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-72 Score=750.54 Aligned_cols=504 Identities=19% Similarity=0.254 Sum_probs=421.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Q 040099 112 YLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGA 191 (1236)
Q Consensus 112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~ 191 (1236)
+++++..++.+++.+++.+.+.+...++|.++++++++.|+.||+++ ++|++++|+++|++.+.+.+...+..++..++
T Consensus 933 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~ll~~p~~ff~~~-~~G~ilnRfs~Di~~id~~l~~~~~~~~~~~~ 1011 (1490)
T TIGR01271 933 GTADSVLALGFFRGLPLVHTLLTVSKRLHEQMLHSVLQAPMAVLNTM-KAGRILNRFTKDMAIIDDMLPLTLFDFIQLTL 1011 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHhCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556677788888899999999999999999999999999999 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHH
Q 040099 192 SFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYN 271 (1236)
Q Consensus 192 ~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~ 271 (1236)
.+++.++++++++|.++++++..+.+++++..++.+..++..+......+.+.+.+.|+++|+.+||+|++++.+.++|.
T Consensus 1012 ~~i~~l~~i~~~~p~l~l~~~~l~~~~~~~~~~~~~~~r~l~~~~~~~~s~l~~~~~Etl~Gl~tIraf~~~~~~~~~~~ 1091 (1490)
T TIGR01271 1012 IVLGAIFVVSVLQPYIFIAAIPVAVIFIMLRAYFLRTSQQLKQLESEARSPIFSHLITSLKGLWTIRAFGRQSYFETLFH 1091 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhcCHHHHHHhCCcHHHHHHHH
Confidence 99999999999999876655444444444555666666767777777888899999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 272 KCLVKSYKSSVQEGLATGLGLGASVFIIFSAYG--LGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFA 349 (1236)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~ 349 (1236)
+..+...+..........+......++..+..+ +++++|. ..++.|.+..++.+.+.+..++..+...+..+.
T Consensus 1092 ~~~~~~~~~~~~~~~~~~wl~~~~~~i~~~~~~~~~~l~~~~-----~~~~~g~~g~~l~~~~~l~~~l~~l~~~~~~le 1166 (1490)
T TIGR01271 1092 KALNLHTANWFLYLSTLRWFQMRIDIIFVFFFIAVTFIAIGT-----NQDGEGEVGIILTLAMNILSTLQWAVNSSIDVD 1166 (1490)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 988765544443333333333333322222111 1222232 234555555555666666778888888888999
Q ss_pred HHHHHHHHHHHHhccCCCccccccC--------------CCC--CCCCCCcEEEEeEEEECCCCCCCccccceeEEecCC
Q 040099 350 AGQAAAFKFFEAINRKPEIDLCCVN--------------GKK--LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNG 413 (1236)
Q Consensus 350 ~~~~s~~ri~~~l~~~~~~~~~~~~--------------~~~--~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g 413 (1236)
.+..|.+|+.++++.+++.+..... ..+ ..+..|.|+|+||+|+|++. .+++|+||||+|+||
T Consensus 1167 ~~~~s~eRi~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~wp~~g~I~f~nVs~~Y~~~-~~~vL~~is~~I~~G 1245 (1490)
T TIGR01271 1167 GLMRSVSRVFKFIDLPQEEPRPSGGGGKYQLSTVLVIENPHAQKCWPSGGQMDVQGLTAKYTEA-GRAVLQDLSFSVEGG 1245 (1490)
T ss_pred HHHHHHHHHHHHhcCCCccccccccccccccccccccccCCCCCCCCCCCeEEEEEEEEEeCCC-CcceeeccEEEEcCC
Confidence 9999999999999876654321100 000 11335789999999999743 467999999999999
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHH
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEI 493 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~ 493 (1236)
|++||||+||||||||+++|+|+|+ ++|+|++||+|+++++.+.+|++|+||||||+||+|||||||.... .++++++
T Consensus 1246 ekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~~~lR~~is~IpQdp~LF~GTIR~NLdp~~-~~tdeei 1323 (1490)
T TIGR01271 1246 QRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTLQTWRKAFGVIPQKVFIFSGTFRKNLDPYE-QWSDEEI 1323 (1490)
T ss_pred CEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCHHHHHhceEEEeCCCccCccCHHHHhCccc-CCCHHHH
Confidence 9999999999999999999999997 7999999999999999999999999999999999999999997654 4689999
Q ss_pred HHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCc
Q 040099 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR 573 (1236)
Q Consensus 494 ~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~ 573 (1236)
++|++.+++++++.++|+|+||.+||+|.+||||||||+||||||+++|+|||||||||+||++|++.|++.|++..+++
T Consensus 1324 ~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQrQrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~ 1403 (1490)
T TIGR01271 1324 WKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNC 1403 (1490)
T ss_pred HHHHHHCCCHHHHHhCccccccccccCCCcCCHHHHHHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999988899
Q ss_pred eEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhh
Q 040099 574 TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 574 t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
|+|+||||++++.+||+|+||++|+|+|.|+|++|+++ ++.|+++++.+..
T Consensus 1404 TvI~IaHRl~ti~~~DrIlvL~~G~ivE~g~p~~Ll~~-~~~f~~l~~~~~~ 1454 (1490)
T TIGR01271 1404 TVILSEHRVEALLECQQFLVIEGSSVKQYDSIQKLLNE-TSLFKQAMSAADR 1454 (1490)
T ss_pred EEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHHcC-CcHHHHHHHHhCh
Confidence 99999999999999999999999999999999999986 7899999876543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-73 Score=697.47 Aligned_cols=452 Identities=22% Similarity=0.371 Sum_probs=353.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHH-Hh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKW-IR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r 460 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+... .|
T Consensus 5 ~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~ 81 (506)
T PRK13549 5 LLEMKNITKTFGG---VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNIRDTER 81 (506)
T ss_pred eEEEeeeEEEeCC---eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHH
Confidence 3899999999962 4699999999999999999999999999999999999996 8999999999997766543 46
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
++++||+|++.+|.. |++||+.++... .+.++..+. +.+.+..+ |++........+||||||||++|
T Consensus 82 ~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgGqkqrv~l 154 (506)
T PRK13549 82 AGIAIIHQELALVKELSVLENIFLGNEITPGGIMDYDAMYLR-----AQKLLAQL--KLDINPATPVGNLGLGQQQLVEI 154 (506)
T ss_pred CCeEEEEeccccCCCCcHHHHhhhcccccccCCcCHHHHHHH-----HHHHHHHc--CCCCCcccchhhCCHHHHHHHHH
Confidence 789999999988865 999999987421 122222111 22334444 45444556667899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
||||+.+|++||||||||+||+.+...+.+.|.++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 155 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~- 233 (506)
T PRK13549 155 AKALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRPAAGMTED- 233 (506)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecccccCCHH-
Confidence 999999999999999999999999999999998874 47899999999999865 999999999999988764433110
Q ss_pred cchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHH
Q 040099 613 YGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLG 692 (1236)
Q Consensus 613 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1236)
+..
T Consensus 234 -----~~~------------------------------------------------------------------------ 236 (506)
T PRK13549 234 -----DII------------------------------------------------------------------------ 236 (506)
T ss_pred -----HHH------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 693 AIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKV 772 (1236)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 772 (1236)
. .
T Consensus 237 ----------------------~-------------------------------------------------------~- 238 (506)
T PRK13549 237 ----------------------T-------------------------------------------------------M- 238 (506)
T ss_pred ----------------------H-------------------------------------------------------H-
Confidence 0 0
Q ss_pred hcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 773 VYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQM 852 (1236)
Q Consensus 773 l~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~ 852 (1236)
++.. . .
T Consensus 239 ------~~~~-~--~----------------------------------------------------------------- 244 (506)
T PRK13549 239 ------MVGR-E--L----------------------------------------------------------------- 244 (506)
T ss_pred ------hhCc-C--c-----------------------------------------------------------------
Confidence 0000 0 0
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 853 KSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVT 932 (1236)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1236)
T Consensus 245 -------------------------------------------------------------------------------- 244 (506)
T PRK13549 245 -------------------------------------------------------------------------------- 244 (506)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEE
Q 040099 933 FYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQ 1012 (1236)
Q Consensus 933 ~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1012 (1236)
. ...+.... . . ...-|+
T Consensus 245 -------------~------------------------------------------~~~~~~~~-~-----~--~~~~l~ 261 (506)
T PRK13549 245 -------------T------------------------------------------ALYPREPH-T-----I--GEVILE 261 (506)
T ss_pred -------------c------------------------------------------cccccccc-C-----C--CCceEE
Confidence 0 00000000 0 0 011489
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-CCCcEEEECCeecccCCh-HHHhcceE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-PSSGHITLDGVEIQKLQV-KWLRQQMG 1090 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-~~~G~I~idG~di~~i~~-~~lR~~i~ 1090 (1236)
++||+++|+.+.+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.++|.++...+. +.+|+.++
T Consensus 262 ~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~ 341 (506)
T PRK13549 262 VRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNPQQAIAQGIA 341 (506)
T ss_pred EecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCHHHHHHCCCE
Confidence 9999999953223459999999999999999999999999999999999998 599999999999865543 45677899
Q ss_pred EEcCCC---CCCh-hhHHHHHHHH----h-h------------hchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHHH
Q 040099 1091 VVSQEP---VLFS-DTIRANIAEM----A-N------------ANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1091 ~V~Qdp---~LF~-gTIreNL~~~----a-~------------~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLARA 1148 (1236)
||||+| .+|. .|+.||+.-. . . +.++++.+ |++. ........||||||||++||||
T Consensus 342 ~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrv~lA~a 419 (506)
T PRK13549 342 MVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRL--KVKTASPELAIARLSGGNQQKAVLAKC 419 (506)
T ss_pred EeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhc--CccCCCcccccccCCHHHHHHHHHHHH
Confidence 999996 3554 5999998521 0 0 11122222 3331 2345567899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..|+++++.
T Consensus 420 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 493 (506)
T PRK13549 420 LLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDLINHNLT 493 (506)
T ss_pred HhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEeccccCC
Confidence 999999999999999999999999999998864 47899999999999865 9999999999999999988874
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-73 Score=699.56 Aligned_cols=459 Identities=29% Similarity=0.451 Sum_probs=355.0
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCCCHH
Q 040099 384 DIELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 457 (1236)
-|+++|++++|+.. .++++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|+++...+..
T Consensus 5 ~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~ 84 (529)
T PRK15134 5 LLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHASEQ 84 (529)
T ss_pred eEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccCCHH
Confidence 48999999999631 124799999999999999999999999999999999999987 799999999999876643
Q ss_pred H---Hh-cceEEEccCCC--CCc-hhHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 458 W---IR-EKIGLVSQEPV--LLS-SSIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 458 ~---~r-~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
. +| ++||||+|++. +++ .|+.+|+.++. ...+. +++.++++..++.+.. ........+
T Consensus 85 ~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~--------~~~~~~~~~ 156 (529)
T PRK15134 85 TLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGMRREAARGEILNCLDRVGIRQAA--------KRLTDYPHQ 156 (529)
T ss_pred HHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCChH--------HHHhhCCcc
Confidence 2 33 57999999985 444 48999986421 11122 3344445444443210 123445568
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++
T Consensus 157 LSgGe~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~ 236 (529)
T PRK15134 157 LSGGERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCV 236 (529)
T ss_pred cCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999875 37899999999999865 9999999999999
Q ss_pred EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhh
Q 040099 601 EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAY 680 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1236)
+.|+.++++..+...+.
T Consensus 237 ~~g~~~~~~~~~~~~~~--------------------------------------------------------------- 253 (529)
T PRK15134 237 EQNRAATLFSAPTHPYT--------------------------------------------------------------- 253 (529)
T ss_pred EeCCHHHHhhCCCCHHH---------------------------------------------------------------
Confidence 98876555321000000
Q ss_pred hcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 681 LNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKL 760 (1236)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 760 (1236)
.
T Consensus 254 ----------------------------------~--------------------------------------------- 254 (529)
T PRK15134 254 ----------------------------------Q--------------------------------------------- 254 (529)
T ss_pred ----------------------------------H---------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040099 761 IKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAI 840 (1236)
Q Consensus 761 ~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~ 840 (1236)
.++ .. . +
T Consensus 255 ------~~~-----------~~-~-~------------------------------------------------------ 261 (529)
T PRK15134 255 ------KLL-----------NS-E-P------------------------------------------------------ 261 (529)
T ss_pred ------HHH-----------Hh-C-c------------------------------------------------------
Confidence 000 00 0 0
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040099 841 FPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGL 920 (1236)
Q Consensus 841 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1236)
T Consensus 262 -------------------------------------------------------------------------------- 261 (529)
T PRK15134 262 -------------------------------------------------------------------------------- 261 (529)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccc
Q 040099 921 SFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYT 1000 (1236)
Q Consensus 921 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 1000 (1236)
...+. .. ...
T Consensus 262 --------------------------------------------------------------------~~~~~-~~-~~~ 271 (529)
T PRK15134 262 --------------------------------------------------------------------SGDPV-PL-PEP 271 (529)
T ss_pred --------------------------------------------------------------------ccccc-cc-CCC
Confidence 00000 00 000
Q ss_pred cCccCCccccEEEeEEEEECCCC--------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 1001 GRTLENVMGEVQFLRVSFKYPTR--------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 1001 ~~~~~~~~g~I~f~~Vsf~Y~~~--------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
. ..-|+++||+++|+.. .+.++|+|+||+|++||++||+||||||||||+++|.|+++ ++|+|++
T Consensus 272 ----~--~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~ 344 (529)
T PRK15134 272 ----A--SPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWF 344 (529)
T ss_pred ----C--CCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEE
Confidence 0 1138899999999631 12468999999999999999999999999999999999984 8999999
Q ss_pred CCeecccCChH---HHhcceEEEcCCC--CCCh-hhHHHHHHHHhh--------------hchHHHhhhhchh-hhhcCC
Q 040099 1073 DGVEIQKLQVK---WLRQQMGVVSQEP--VLFS-DTIRANIAEMAN--------------ANGFISGLQEGYD-TLVGER 1131 (1236)
Q Consensus 1073 dG~di~~i~~~---~lR~~i~~V~Qdp--~LF~-gTIreNL~~~a~--------------~~~~i~~lp~Gld-t~vge~ 1131 (1236)
||.++...+.. .+|++++||||+| .+|. .|++||+..... +.++++.+ |++ ......
T Consensus 345 ~g~~i~~~~~~~~~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~ 422 (529)
T PRK15134 345 DGQPLHNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIAVMEEV--GLDPETRHRY 422 (529)
T ss_pred CCEEccccchhhHHHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccCChHHHHHHHHHHHHHc--CCCHHHHhcC
Confidence 99999876644 3578899999998 3665 599999963111 11122222 453 234566
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCC
Q 040099 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQG 1208 (1236)
Q Consensus 1132 G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G 1208 (1236)
..+||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 423 ~~~LSgG~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G 502 (529)
T PRK15134 423 PAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQG 502 (529)
T ss_pred CccCCHHHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECC
Confidence 789999999999999999999999999999999999999999999998753 7899999999999875 9999999999
Q ss_pred EEEEecChhHHhhccC
Q 040099 1209 MIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1209 ~Ive~Gt~~eLl~~~~ 1224 (1236)
+|++.|+++++++.+.
T Consensus 503 ~i~~~~~~~~~~~~~~ 518 (529)
T PRK15134 503 EVVEQGDCERVFAAPQ 518 (529)
T ss_pred EEEEEcCHHHHhcCCC
Confidence 9999999999987533
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-72 Score=708.16 Aligned_cols=511 Identities=21% Similarity=0.310 Sum_probs=441.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHH
Q 040099 106 VSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGK 185 (1236)
Q Consensus 106 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~ 185 (1236)
+...+.+++++..++..++.+.+...+.+....|..++++++++-|++|||.+ ++|.++||+++|++.+.+.+...+..
T Consensus 860 ~~~vY~~l~~~~~~~~~~rs~~~~~~~l~aS~~Lh~~ml~~Ilrapm~FFdtT-P~GRILNRFSkD~~~vD~~Lp~~~~~ 938 (1381)
T KOG0054|consen 860 YLGVYALLGVASSLLTLLRSFLFAKGGLKASRKLHDKLLNSILRAPMSFFDTT-PTGRILNRFSKDIDTVDVLLPFTLEF 938 (1381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcchhcCCC-CccchhhhcccchHHHHHhhHHHHHH
Confidence 45566677778888888999999999999999999999999999999999999 99999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH
Q 040099 186 FIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQ 265 (1236)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~ 265 (1236)
++..++.+++.++++.+..|...++++....+++.+..++.+-.|...+-.....+-+-+++.|+++|+.|||+|+.|++
T Consensus 939 ~~~~~~~~l~~~~vi~~~~P~fli~~~pl~v~~~~~~~~Y~~tsReLkRLesitRSPi~sh~~Etl~GlsTIRAf~~~~r 1018 (1381)
T KOG0054|consen 939 FLQSLLNVLGILVVISYVTPWFLIAIIPLGVIYYFVQRYYLATSRELKRLESITRSPIYSHFSETLQGLSTIRAFGKEER 1018 (1381)
T ss_pred HHHHHHHHHHHHHHhhHHhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhhhcccchHHHhHHHHhcCcceeeeccccHH
Confidence 99999999999999999999988887777777777777777777777777777788888999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 266 ASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCL 345 (1236)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~ 345 (1236)
+.+++....+...+...-.....-++.--..++..+....+..+.... ..+.+++|.+=..+.|.+.+...+..+....
T Consensus 1019 f~~~~~~~~D~~~~~~f~~~~a~RWla~Rle~ig~~~v~~~al~~vl~-~~~~~~~g~vGLslsyal~lt~~l~~~vR~~ 1097 (1381)
T KOG0054|consen 1019 FIQENDELIDENSRAFFLSISANRWLAVRLELLGNLVVLIAALFAVLL-PSGLISPGLVGLSLSYALQLTGLLQWLVRQS 1097 (1381)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-cCCCCCcchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999888877766554433333333333444333332222222111 1222667877777788888888888888889
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccC--CCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCC
Q 040099 346 SAFAAGQAAAFKFFEAINRKPEIDLCCVN--GKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSG 423 (1236)
Q Consensus 346 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~--~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sG 423 (1236)
..+.....|.||+.|+.+.++|.+..... +++..+.+|+|+|+|++.+|.++ .++|||||||+|+|||++||||++|
T Consensus 1098 ~elEn~m~SVERv~eY~~~~~E~p~~~~~~~pp~~WP~~G~I~f~~~~~RYrp~-lp~VLk~is~~I~p~eKVGIVGRTG 1176 (1381)
T KOG0054|consen 1098 SELENNMVSVERVLEYTDIPSEAPLEIEESRPPPSWPSKGEIEFEDLSLRYRPN-LPLVLKGISFTIKPGEKVGIVGRTG 1176 (1381)
T ss_pred HHHHhcchhhhHHHHHhcCCCCCCCCCcCCCCCCCCCCCCeEEEEEeEEEeCCC-CcchhcCceEEEcCCceEEEeCCCC
Confidence 99999999999999999977661111111 12234567999999999999643 3689999999999999999999999
Q ss_pred CcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccH
Q 040099 424 SGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503 (1236)
Q Consensus 424 sGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~ 503 (1236)
||||||++.|-|+.+|.+|+|.|||.|+.++.+++||++++++||||.||+||+|.|+--- ...+|+++|+|++.|++.
T Consensus 1177 aGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL~dLRsrlsIIPQdPvLFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk 1255 (1381)
T KOG0054|consen 1177 AGKSSLILALFRLVEPAEGEILIDGVDISKIGLHDLRSRLSIIPQDPVLFSGTVRFNLDPF-DEYSDDEIWEALERCQLK 1255 (1381)
T ss_pred CCHHHHHHHHHHhcCccCCeEEEcCeecccccHHHHHhcCeeeCCCCceecCccccccCcc-cccCHHHHHHHHHHhChH
Confidence 9999999999999999999999999999999999999999999999999999999998633 356899999999999999
Q ss_pred HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCch
Q 040099 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 504 ~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
+++.++|+|+|+.|.|+|.|+|-||||.+||||||+++++||+|||||+++|++|...||+.|++..+++|||.||||++
T Consensus 1256 ~~v~~~p~~Ld~~v~egG~N~SvGQRQLlCLARALLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~ 1335 (1381)
T KOG0054|consen 1256 DVVSSLPGGLDSEVSEGGENFSVGQRQLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLN 1335 (1381)
T ss_pred HHHhhCCcCCCceecCCCccCChHHHHHHHHHHHHhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 584 LIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 584 ~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
|+.++|||+|||+|+|+|.|+|.+|++++++.|+++.
T Consensus 1336 TVmd~DrVlVld~G~v~EfdsP~~Ll~~~~S~f~~~l 1372 (1381)
T KOG0054|consen 1336 TVMDSDRVLVLDAGRVVEFDSPAELLSDKDSLFSSLL 1372 (1381)
T ss_pred hhhhcCeEEEeeCCeEeecCChHHHHhCCcchHHHHH
Confidence 9999999999999999999999999998778776444
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-71 Score=624.28 Aligned_cols=533 Identities=21% Similarity=0.262 Sum_probs=471.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 64 VGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFY 143 (1236)
Q Consensus 64 ~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~ 143 (1236)
...+++.+..++....|+++-++-|.+.+..+. ..+....++.+++.++..++.+++.....+++.++...+...+
T Consensus 27 ~v~lfS~~INiL~L~~~lyMLQVyDRVL~S~s~----~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v 102 (580)
T COG4618 27 GVGLFSAVINLLALTGPLYMLQVYDRVLPSRSV----PTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPV 102 (580)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHhhhccCCCc----chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHH
Confidence 334455555666677778888899987654332 2333344555666777888999999999999999999999999
Q ss_pred HHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Q 040099 144 LETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGE-KVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAG 222 (1236)
Q Consensus 144 ~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~ 222 (1236)
|....+.+..- + ..|+=..-+ +|.++++.|++. .+..++...++.+. +.++|.+++.+.++.++...+++.+.
T Consensus 103 ~~a~~~~~l~~---~-~~g~~~Q~L-rDL~qvR~Fltg~g~~A~fDaPW~P~y-l~v~fl~Hp~lG~~a~~ga~iLv~la 176 (580)
T COG4618 103 FAASFSAPLLR---R-GSGDGLQPL-RDLDQVRQFLTGTGLTAFFDAPWMPLY-LAVIFLFHPWLGLIALAGAIILVVLA 176 (580)
T ss_pred HHHHHhhHHhh---c-CCCccccch-hhHHHHHHHHcCCCcchhcCCchHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99998777653 2 455444444 599999999986 55556666676654 55678889999999999888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Q 040099 223 VVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSA 302 (1236)
Q Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 302 (1236)
++-.+..++..++..+...+.+..+.-+..+..+|++.|+.+...++|.+.+.++.....+..-..+.+..++..+-.+.
T Consensus 177 ~ln~~~t~~p~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~l 256 (580)
T COG4618 177 LLNERATRKPLKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMAL 256 (580)
T ss_pred HHHHHHhhccHHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 88888888889999999999999999999999999999999999999999999999999888888888888888888899
Q ss_pred HHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCC
Q 040099 303 YGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIR 382 (1236)
Q Consensus 303 ~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~ 382 (1236)
...++..|+|++++|++|.|.+++-...+.....|+......+.++..++.|.+|+.+++...|+... ..+.|..+
T Consensus 257 Qs~iLg~GA~Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~ 332 (580)
T COG4618 257 QSAVLGLGAWLVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQ 332 (580)
T ss_pred HHHHHhcceeeEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCC
Confidence 99999999999999999999999988888888899999999999999999999999999998776432 24556778
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.+.++++++.-|+ .++++|+|+||++++||.+|||||||||||||.|+|.|.++|.+|.|++||-|+++++.+.+-++
T Consensus 333 g~L~Ve~l~~~PPg-~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~h 411 (580)
T COG4618 333 GALSVERLTAAPPG-QKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRH 411 (580)
T ss_pred ceeeEeeeeecCCC-CCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccc
Confidence 99999999997665 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|||.|||..||+|||+|||+=..++.+++.+.+|++.+++||.|.++|+||||.||+.|..|||||||||+||||||.||
T Consensus 412 iGYLPQdVeLF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P 491 (580)
T COG4618 412 IGYLPQDVELFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDP 491 (580)
T ss_pred cCcCcccceecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCC
Confidence 99999999999999999998666788999999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
.+++||||-|+||.+-|+.+.++|...+ +|.|+|+||||++.+..+|+|.||++|++...|+.+|.+++
T Consensus 492 ~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 492 FLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred cEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 9999999999999999999999998886 58899999999999999999999999999999999998865
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-72 Score=688.02 Aligned_cols=449 Identities=22% Similarity=0.377 Sum_probs=349.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 462 (1236)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 5 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 81 (510)
T PRK09700 5 YISMAGIGKSFGP---VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLAAQLG 81 (510)
T ss_pred eEEEeeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHHHHHHCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998776554 3467
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCC---------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTH---------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++||+|++.++.. |++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||+
T Consensus 82 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrv 154 (510)
T PRK09700 82 IGIIYQELSVIDELTVLENLYIGRHLTKKVCGVNIIDWREMRV-----RAAMMLLRV--GLKVDLDEKVANLSISHKQML 154 (510)
T ss_pred eEEEeecccccCCCcHHHHhhhccccccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccchhhCCHHHHHHH
Confidence 9999999988875 999999876421 01111111 122333433 454445566678999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 155 ~ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (510)
T PRK09700 155 EIAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSGMVSDVSN 234 (510)
T ss_pred HHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeecchhhCCH
Confidence 99999999999999999999999999999999999875 47899999999999875 99999999999998876554421
Q ss_pred cccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHH
Q 040099 611 NPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALL 690 (1236)
Q Consensus 611 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1236)
. +...
T Consensus 235 ~------~~~~--------------------------------------------------------------------- 239 (510)
T PRK09700 235 D------DIVR--------------------------------------------------------------------- 239 (510)
T ss_pred H------HHHH---------------------------------------------------------------------
Confidence 1 0000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 691 LGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFE 770 (1236)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 770 (1236)
T Consensus 240 -------------------------------------------------------------------------------- 239 (510)
T PRK09700 240 -------------------------------------------------------------------------------- 239 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040099 771 KVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850 (1236)
Q Consensus 771 ~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~ 850 (1236)
.+ +. ...
T Consensus 240 ~~-------~~---~~~--------------------------------------------------------------- 246 (510)
T PRK09700 240 LM-------VG---REL--------------------------------------------------------------- 246 (510)
T ss_pred Hh-------cC---CCc---------------------------------------------------------------
Confidence 00 00 000
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYA 930 (1236)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1236)
..
T Consensus 247 -----~~------------------------------------------------------------------------- 248 (510)
T PRK09700 247 -----QN------------------------------------------------------------------------- 248 (510)
T ss_pred -----cc-------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCcccc
Q 040099 931 VTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGE 1010 (1236)
Q Consensus 931 ~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1010 (1236)
... ...+... .. .. ..-
T Consensus 249 -------------~~~------------------------------------------~~~~~~~--~~----~~--~~~ 265 (510)
T PRK09700 249 -------------RFN------------------------------------------AMKENVS--NL----AH--ETV 265 (510)
T ss_pred -------------ccc------------------------------------------ccccccc--cC----CC--CcE
Confidence 000 0000000 00 00 114
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~i 1089 (1236)
++++|+++.|. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+. ..+|+++
T Consensus 266 l~~~~l~~~~~-----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~i 340 (510)
T PRK09700 266 FEVRNVTSRDR-----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSPLDAVKKGM 340 (510)
T ss_pred EEEeCccccCC-----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCHHHHHHCCc
Confidence 89999998762 27999999999999999999999999999999999999999999999999876543 4567899
Q ss_pred EEEcCCC---CCChh-hHHHHHHHHh-----------h----------hchHHHhhhhchh-hhhcCCCCCCChhHHHHH
Q 040099 1090 GVVSQEP---VLFSD-TIRANIAEMA-----------N----------ANGFISGLQEGYD-TLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1090 ~~V~Qdp---~LF~g-TIreNL~~~a-----------~----------~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRl 1143 (1236)
+||||++ .+|.. |++||+.-.. + +.+.++.+ |+. .........||||||||+
T Consensus 341 ~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv 418 (510)
T PRK09700 341 AYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELL--ALKCHSVNQNITELSGGNQQKV 418 (510)
T ss_pred EEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhc--CCCCCCccCccccCChHHHHHH
Confidence 9999984 57754 9999985210 0 11122221 332 223455678999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
+|||||+.+|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.+++.+
T Consensus 419 ~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 495 (510)
T PRK09700 419 LISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQILTNRD 495 (510)
T ss_pred HHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEecCcc
Confidence 99999999999999999999999999999999998864 47899999999998865 99999999999999987633
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-72 Score=684.71 Aligned_cols=444 Identities=25% Similarity=0.381 Sum_probs=348.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 462 (1236)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+... .+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (501)
T PRK10762 4 LLQLKGIDKAFPG---VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGPKSSQEAG 80 (501)
T ss_pred eEEEeeeEEEeCC---eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999987655443 4578
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCC------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTH------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
++||+|++.++.. |++||+.++... .+.++..+. +.+.+..+ |+.........+||||||||++||
T Consensus 81 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 153 (501)
T PRK10762 81 IGIIHQELNLIPQLTIAENIFLGREFVNRFGRIDWKKMYAE-----ADKLLARL--NLRFSSDKLVGELSIGEQQMVEIA 153 (501)
T ss_pred EEEEEcchhccCCCcHHHHhhhccccccccCccCHHHHHHH-----HHHHHHHc--CCCCCccCchhhCCHHHHHHHHHH
Confidence 9999999988765 999999986421 112221111 22334443 454444556678999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 154 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~-- 231 (501)
T PRK10762 154 KVLSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAEREVADLTED-- 231 (501)
T ss_pred HHHhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEecCcCcCCHH--
Confidence 99999999999999999999999999999998874 47899999999999865 999999999999987754433110
Q ss_pred chhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHH
Q 040099 614 GAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGA 693 (1236)
Q Consensus 614 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1236)
.+.
T Consensus 232 ----~~~------------------------------------------------------------------------- 234 (501)
T PRK10762 232 ----SLI------------------------------------------------------------------------- 234 (501)
T ss_pred ----HHH-------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 694 IASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVV 773 (1236)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 773 (1236)
..
T Consensus 235 ---------------------~~--------------------------------------------------------- 236 (501)
T PRK10762 235 ---------------------EM--------------------------------------------------------- 236 (501)
T ss_pred ---------------------HH---------------------------------------------------------
Confidence 00
Q ss_pred cCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 774 YMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK 853 (1236)
Q Consensus 774 ~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~ 853 (1236)
++.. ..
T Consensus 237 -----~~~~-~~-------------------------------------------------------------------- 242 (501)
T PRK10762 237 -----MVGR-KL-------------------------------------------------------------------- 242 (501)
T ss_pred -----hcCC-Cc--------------------------------------------------------------------
Confidence 0000 00
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTF 933 (1236)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1236)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK10762 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEE
Q 040099 934 YVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQF 1013 (1236)
Q Consensus 934 ~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f 1013 (1236)
....+.... + ...--|++
T Consensus 243 ------------------------------------------------------~~~~~~~~~------~--~~~~~l~~ 260 (501)
T PRK10762 243 ------------------------------------------------------EDQYPRLDK------A--PGEVRLKV 260 (501)
T ss_pred ------------------------------------------------------ccccccccc------C--CCCcEEEE
Confidence 000000000 0 00114788
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcceEEE
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQMGVV 1092 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~i~~V 1092 (1236)
+|+++ .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. +.+|++++||
T Consensus 261 ~~l~~--------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~~~~~~~~i~~v 332 (501)
T PRK10762 261 DNLSG--------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSPQDGLANGIVYI 332 (501)
T ss_pred eCccc--------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHHCCCEEe
Confidence 89874 26999999999999999999999999999999999999999999999999977654 4567889999
Q ss_pred cCCC---CCCh-hhHHHHHHHHh------------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1093 SQEP---VLFS-DTIRANIAEMA------------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1093 ~Qdp---~LF~-gTIreNL~~~a------------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
||+| .+|. .|++||+.-.. .+.+++..+ |+. .........||||||||++|||||
T Consensus 333 ~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqrv~lA~al 410 (501)
T PRK10762 333 SEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLF--NIKTPSMEQAIGLLSGGNQQKVAIARGL 410 (501)
T ss_pred cCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhc--CCCCCCccCchhhCCHHHHHHHHHHHHH
Confidence 9997 3554 69999985210 011122211 342 234556678999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+.+|+||||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 411 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 483 (501)
T PRK10762 411 MTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFTREQAT 483 (501)
T ss_pred hhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEeccccCC
Confidence 99999999999999999999999999999875 47899999999999865 9999999999999999888764
|
|
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-72 Score=690.20 Aligned_cols=443 Identities=25% Similarity=0.467 Sum_probs=343.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCcEEEEC---------------
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY--DPQAGEVLID--------------- 447 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~--------------- 447 (1236)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+. +|++|+|.++
T Consensus 1 l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~ 77 (520)
T TIGR03269 1 IEVKNLTKKFDG---KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSK 77 (520)
T ss_pred CEEEEEEEEECC---eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEeccccccccccccccc
Confidence 478999999952 46999999999999999999999999999999999996 7999999997
Q ss_pred --------CeecC-------CCC---HHHHhcceEEEccC-CCCCc-hhHHHHHhcCCC--CCCH----HHHHHHHHHhc
Q 040099 448 --------GVNLK-------EFQ---LKWIREKIGLVSQE-PVLLS-SSIRDNIAYGKT--HATK----EEIQAAAEAAN 501 (1236)
Q Consensus 448 --------g~~~~-------~~~---~~~~r~~i~~v~Q~-~~l~~-~ti~~ni~~g~~--~~~~----~~~~~~~~~~~ 501 (1236)
|.++. ..+ ...+|+.++||+|+ +.+|+ .|++||+.++.. .... +++.++++..
T Consensus 78 ~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~- 156 (520)
T TIGR03269 78 VGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMV- 156 (520)
T ss_pred cccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-
Confidence 33321 111 12457789999998 56776 499999987521 1222 2233334444
Q ss_pred cHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEe
Q 040099 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVS 579 (1236)
Q Consensus 502 ~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~it 579 (1236)
|++........+||||||||++|||||+.+|++|||||||++||+.+.+++.+.|+++. .++|+|+||
T Consensus 157 ----------gl~~~~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivt 226 (520)
T TIGR03269 157 ----------QLSHRITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTS 226 (520)
T ss_pred ----------CChhhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEe
Confidence 44434445567899999999999999999999999999999999999999999999884 378999999
Q ss_pred cCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcC
Q 040099 580 HRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETE 658 (1236)
Q Consensus 580 H~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 658 (1236)
|+++.+.. ||+|++|++|++++.|+++++... |
T Consensus 227 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~----~------------------------------------------ 260 (520)
T TIGR03269 227 HWPEVIEDLSDKAIWLENGEIKEEGTPDEVVAV----F------------------------------------------ 260 (520)
T ss_pred CCHHHHHHhcCEEEEEeCCEEeeecCHHHHHHH----H------------------------------------------
Confidence 99999865 999999999999876543221100 0
Q ss_pred CCCccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHH
Q 040099 659 SDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVAL 738 (1236)
Q Consensus 659 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 738 (1236)
T Consensus 261 -------------------------------------------------------------------------------- 260 (520)
T TIGR03269 261 -------------------------------------------------------------------------------- 260 (520)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 739 GAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTAT 818 (1236)
Q Consensus 739 ~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~ 818 (1236)
.+ .
T Consensus 261 -----------------------------------------~~--~---------------------------------- 263 (520)
T TIGR03269 261 -----------------------------------------ME--G---------------------------------- 263 (520)
T ss_pred -----------------------------------------Hh--h----------------------------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHH
Q 040099 819 AVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKK 898 (1236)
Q Consensus 819 ~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~ 898 (1236)
+ .
T Consensus 264 ------------~------------------------~------------------------------------------ 265 (520)
T TIGR03269 264 ------------V------------------------S------------------------------------------ 265 (520)
T ss_pred ------------c------------------------h------------------------------------------
Confidence 0 0
Q ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 899 KCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAK 978 (1236)
Q Consensus 899 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 978 (1236)
..
T Consensus 266 --------------------------------------------------------------------------~~---- 267 (520)
T TIGR03269 266 --------------------------------------------------------------------------EV---- 267 (520)
T ss_pred --------------------------------------------------------------------------hh----
Confidence 00
Q ss_pred HHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCC--CCCcccccceeEEecCCCEEEEEcCCCCChHHHH
Q 040099 979 SSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPT--RPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVI 1056 (1236)
Q Consensus 979 ~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~--~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~ 1056 (1236)
......+ . ...-++++||+++|++ +...++|+|+||+|++||++||+||||||||||+
T Consensus 268 ----------~~~~~~~----~------~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl 327 (520)
T TIGR03269 268 ----------EKECEVE----V------GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLS 327 (520)
T ss_pred ----------ccccccC----C------CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHH
Confidence 0000000 0 0114899999999963 1124699999999999999999999999999999
Q ss_pred HHHhcccCCCCcEEEEC-Ce---ecccCC---hHHHhcceEEEcCCCCCChh-hHHHHHHHHh-----------hhchHH
Q 040099 1057 SLLQRFYDPSSGHITLD-GV---EIQKLQ---VKWLRQQMGVVSQEPVLFSD-TIRANIAEMA-----------NANGFI 1117 (1236)
Q Consensus 1057 ~lL~r~~~~~~G~I~id-G~---di~~i~---~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a-----------~~~~~i 1117 (1236)
++|.|+++|++|+|.++ |. ++...+ ...+|++++||||++.+|.. |++||+.... .+.+++
T Consensus 328 ~~l~Gl~~p~~G~i~~~~g~~~~~~~~~~~~~~~~~~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~l 407 (520)
T TIGR03269 328 KIIAGVLEPTSGEVNVRVGDEWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRTVLDNLTEAIGLELPDELARMKAVITL 407 (520)
T ss_pred HHHhCCCCCCCeEEEEecCCccccccccchhhHHHHhhhEEEEccCcccCCCCcHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 99999999999999996 64 344332 23567889999999988874 9999995211 111222
Q ss_pred Hhhhhchhh-----hhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEe
Q 040099 1118 SGLQEGYDT-----LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVA 1190 (1236)
Q Consensus 1118 ~~lp~Gldt-----~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~Ia 1190 (1236)
+.+ |++. ........||||||||++|||||+.+|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+||
T Consensus 408 ~~~--~l~~~~~~~~~~~~~~~LSgGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vs 485 (520)
T TIGR03269 408 KMV--GFDEEKAEEILDKYPDELSEGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVS 485 (520)
T ss_pred HhC--CCCCccchhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEe
Confidence 222 3421 24556678999999999999999999999999999999999999999999988753 68999999
Q ss_pred cCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1191 HRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1191 HRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 486 Hd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 518 (520)
T TIGR03269 486 HDMDFVLDVCDRAALMRDGKIVKIGDPEEIVEE 518 (520)
T ss_pred CCHHHHHHhCCEEEEEECCEEEEECCHHHHHhh
Confidence 99999976 999999999999999999998653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-69 Score=670.51 Aligned_cols=526 Identities=18% Similarity=0.191 Sum_probs=413.2
Q ss_pred HHHhhchhhHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 50 LLSFADLLDSVLMLVGTIAATGNGLCVPF-VALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQVACW 128 (1236)
Q Consensus 50 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 128 (1236)
+++|.+++++. ++++++++++.+++... .|++.+.++|.... +. ..+.. ++++.++..++.+++.++.
T Consensus 4 ~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~--~~----~~~~~----~~~~~~~~~~~~~~~~~~~ 72 (547)
T PRK10522 4 LRLVWRQYRWP-FISVMALSLASAALGIGLIAFINQRLIETADT--SL----LVLPE----FLGLLLLLMAVTLGSQLAL 72 (547)
T ss_pred HHHHHHhhhHH-HHHHHHHHHHHHHHHHHHHHHHHHHHhccccc--cc----hHHHH----HHHHHHHHHHHHHHHHHHH
Confidence 34566666553 34555555555555544 46677888886432 11 11111 1122223345677888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 040099 129 MITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLT 208 (1236)
Q Consensus 129 ~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 208 (1236)
.+.+.++..++|.++|+|++++|+++|+++ ++|++++|+++|++.+..++. .++.++.+++++++.++++++++|.++
T Consensus 73 ~~~~~~~~~~lR~~l~~~ll~~~~~~~~~~-~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~ 150 (547)
T PRK10522 73 TTLGHHFVYRLRSEFIKRILDTHVERIEQL-GSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKML 150 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCHHHHhcc-CccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 999999999999999999999999999999 999999999999999998776 467888899999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchH---HHHHHHHHHHHHHHHHHHHHHH
Q 040099 209 LTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGE---QQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 209 l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e---~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
+++++++|+.+++..++.++.++..++.++..+++++.+.|.++|+++++ ++.+ +.+.++|++..++..+...+..
T Consensus 151 li~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 229 (547)
T PRK10522 151 LVTAIWMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRAD 229 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHH
Confidence 99999999999899999999999999999999999999999999999996 5544 3567888888887777766665
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
........+..++..+..++.+++++.. +..+.+.+..+..+.+....|+..+...+..++++..+.+|+.++++.+
T Consensus 230 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~ 306 (547)
T PRK10522 230 TFHLSAVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAP 306 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 5554444433333333333334444332 1223334444444444556899999999999999999999999997654
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.+... ....+ ..+.|+++||+|+|++ ++++|+|+||+|+|||++||+||||||||||+++|+|+|+|++|+|.
T Consensus 307 ~~~~~~~--~~~~~-~~~~i~~~~v~f~y~~--~~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~ 381 (547)
T PRK10522 307 YKAEFPR--PQAFP-DWQTLELRNVTFAYQD--NGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEIL 381 (547)
T ss_pred ccccccc--ccccC-cCceEEEEEEEEEeCC--CCeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEE
Confidence 3321111 11111 1357999999999973 34699999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+||+|+++++.+++|++|+||+||+++|++|++|| + ++.++++++++++.+++.+++. .|+|. .+|.+||
T Consensus 382 ~~g~~~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n---~-~~~~~~~~~~~~~~~~l~~~~~-~~~~~-----~~G~~LS 451 (547)
T PRK10522 382 LDGKPVTAEQPEDYRKLFSAVFTDFHLFDQLLGPE---G-KPANPALVEKWLERLKMAHKLE-LEDGR-----ISNLKLS 451 (547)
T ss_pred ECCEECCCCCHHHHhhheEEEecChhHHHHhhccc---c-CchHHHHHHHHHHHcCCchhhh-ccccC-----CCCCCCC
Confidence 99999999999999999999999999999999999 3 3566777877777777666554 23332 1478999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEE-
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEK- 602 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~- 602 (1236)
||||||++||||++++|++||||||||+||+++++.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|.
T Consensus 452 gGq~qRl~lARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~ 531 (547)
T PRK10522 452 KGQKKRLALLLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELT 531 (547)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999999987654 47999999999999999999999999999886
Q ss_pred eCccc
Q 040099 603 GTHSE 607 (1236)
Q Consensus 603 g~~~~ 607 (1236)
|++.+
T Consensus 532 ~~~~~ 536 (547)
T PRK10522 532 GEERD 536 (547)
T ss_pred CCchh
Confidence 44433
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-72 Score=606.72 Aligned_cols=466 Identities=32% Similarity=0.482 Sum_probs=363.1
Q ss_pred cEEEEeEEEECCC-CCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCCCHH
Q 040099 384 DIELKDVNFSYPA-RPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~-~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~ 457 (1236)
-++++|++..|.. +....++++|||+|++||++||||+||||||-..+.++|+++. -+|+|.++|.|+-..+..
T Consensus 6 lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~~se~ 85 (534)
T COG4172 6 LLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLAASER 85 (534)
T ss_pred ceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhcCCHH
Confidence 4788999888852 2346799999999999999999999999999999999999864 479999999999888877
Q ss_pred HHhc----ceEEEccCCC--CCch-h----HHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 458 WIRE----KIGLVSQEPV--LLSS-S----IRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 458 ~~r~----~i~~v~Q~~~--l~~~-t----i~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
.+|. +|++++|||. |-+- | +.|-|.+-+. .+..+++.+.++.+++.+- ...+...+.+
T Consensus 86 ~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg~~~~~Ar~r~lelL~~VgI~~p--------~~rl~~yPHe 157 (534)
T COG4172 86 QLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRGLSRAAARARALELLELVGIPEP--------EKRLDAYPHE 157 (534)
T ss_pred HHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCch--------hhhhhhCCcc
Confidence 7663 7999999994 2221 4 4455554321 2234556666666665432 1223445569
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
||||||||+.||.||+.+|++||-||||.|||.....+|.+.|+++.+ |..+++|||++..++. ||||+||.+|+++
T Consensus 158 LSGGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~iv 237 (534)
T COG4172 158 LSGGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIV 237 (534)
T ss_pred cCcchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEe
Confidence 999999999999999999999999999999999999999999998854 7899999999999987 9999999999999
Q ss_pred EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhh
Q 040099 601 EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAY 680 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 680 (1236)
|+|+.++++..|...|.+..-..+. . -... +.
T Consensus 238 E~~~t~~lF~~PqHpYTr~Ll~aeP----------~--g~~~--p~---------------------------------- 269 (534)
T COG4172 238 ETGTTETLFAAPQHPYTRKLLAAEP----------S--GDPP--PL---------------------------------- 269 (534)
T ss_pred ecCcHHHHhhCCCChHHHHHHhcCC----------C--CCCC--CC----------------------------------
Confidence 9999999998887777665421100 0 0000 00
Q ss_pred hcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 681 LNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKL 760 (1236)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 760 (1236)
T Consensus 270 -------------------------------------------------------------------------------- 269 (534)
T COG4172 270 -------------------------------------------------------------------------------- 269 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 040099 761 IKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAI 840 (1236)
Q Consensus 761 ~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~ 840 (1236)
T Consensus 270 -------------------------------------------------------------------------------- 269 (534)
T COG4172 270 -------------------------------------------------------------------------------- 269 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 040099 841 FPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGL 920 (1236)
Q Consensus 841 ~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 920 (1236)
T Consensus 270 -------------------------------------------------------------------------------- 269 (534)
T COG4172 270 -------------------------------------------------------------------------------- 269 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccc
Q 040099 921 SFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYT 1000 (1236)
Q Consensus 921 ~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~ 1000 (1236)
T Consensus 270 -------------------------------------------------------------------------------- 269 (534)
T COG4172 270 -------------------------------------------------------------------------------- 269 (534)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred cCccCCccccEEEeEEEEECCCC--------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 1001 GRTLENVMGEVQFLRVSFKYPTR--------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 1001 ~~~~~~~~g~I~f~~Vsf~Y~~~--------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+++..--++.+||...||-+ ....+.++|||+.++||++||||.||||||||-.+|+|+.+++ |+|.+
T Consensus 270 ---~~~~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F 345 (534)
T COG4172 270 ---PEDAPVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRF 345 (534)
T ss_pred ---CCCCCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEE
Confidence 00000012222222222211 1234799999999999999999999999999999999999876 99999
Q ss_pred CCeecccCChHH---HhcceEEEcCCCC--CC-hhhHHHHHHHHhhhch-----------HHHhhhh-chhhhh-cCCCC
Q 040099 1073 DGVEIQKLQVKW---LRQQMGVVSQEPV--LF-SDTIRANIAEMANANG-----------FISGLQE-GYDTLV-GERGV 1133 (1236)
Q Consensus 1073 dG~di~~i~~~~---lR~~i~~V~Qdp~--LF-~gTIreNL~~~a~~~~-----------~i~~lp~-Gldt~v-ge~G~ 1133 (1236)
+|.||...+.+. +|+++-+|+|||+ |= ..||.+-|.|-..+|+ .++.|.+ |+|-.. ..-..
T Consensus 346 ~G~~i~~~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPh 425 (534)
T COG4172 346 DGQDIDGLSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPH 425 (534)
T ss_pred CCccccccChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhHhhcCCc
Confidence 999999887654 6889999999996 22 2366666643333332 2223322 555332 23457
Q ss_pred CCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
.+|||||||||||||++-+|++++||||||+||..-.++|.+.|+++- .+-+-++|+|+|..++. ||+|+||.+|+|
T Consensus 426 EFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~Gki 505 (534)
T COG4172 426 EFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKI 505 (534)
T ss_pred ccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEE
Confidence 899999999999999999999999999999999999999999998864 45699999999999987 999999999999
Q ss_pred EEecChhHHhhccCcccHH
Q 040099 1211 VEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1211 ve~Gt~~eLl~~~~g~y~~ 1229 (1236)
||+|+-+++++++...|.+
T Consensus 506 VE~G~~~~if~~P~~~YT~ 524 (534)
T COG4172 506 VEQGPTEAVFANPQHEYTR 524 (534)
T ss_pred eeeCCHHHHhcCCCcHHHH
Confidence 9999999999998888865
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-69 Score=670.11 Aligned_cols=522 Identities=15% Similarity=0.154 Sum_probs=428.8
Q ss_pred hhHHHhhhcC-CchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNS-PEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 674 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
.+++++.+.+ ++++.++++++++++.++.....++++..+++....... .....++++.++..++.++..++
T Consensus 4 ~~~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~i~~~i~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ 76 (555)
T TIGR01194 4 AIGEILALLRSPFPAITAFSIALGLAGGLAIIALLASINNAIHEENFLGQ-------GSLFSFGGLCLLALLFRIGADIF 76 (555)
T ss_pred hHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccc-------hHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567777777 888888888888888777777776666666542211000 01122334455566778888889
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
....+.+...++|.++|++++++|++||++ +++|++++|+++|++.++.++.. +..++..++.+++.++++++.+|.
T Consensus 77 ~~~~~~~~~~~lR~~l~~~l~~~~~~~~~~--~~~G~l~srl~~Dv~~i~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~ 153 (555)
T TIGR01194 77 PAYAGMHIIANLRIALCEKILGAPIEEIDR--RGAHNLIPLLTHDIDQINAFLFI-FPPIAIALAIFFFCIAYLAYLSVP 153 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHHh--cCcchhhHHHhhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999984 78999999999999999998864 777788888888888999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH--HHHHHHHHHHhhHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEE--KVMKLYKKKCEGPIKAGIRQ 910 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~--~~~~~~~~~~~~~~~~~~~~ 910 (1236)
+++++++.+|+.++...+..++.++...+.++..++..+.+.|.++|++++|+|+.++ +..+++.+..++..+...+.
T Consensus 154 L~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~g~~~ik~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (555)
T TIGR01194 154 MFAITISAIIIGTAAQLLAFMGGFKFFHAARDEEDAFNEHTHAIAFGAKELKIHGIRRLSFAHGAIQESANNIADLHIIE 233 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhHHHHHhcCHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 9999999888888877777776666677777788889999999999999999999954 55778888887777766655
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 911 GLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQ 990 (1236)
Q Consensus 911 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~ 990 (1236)
.........+...+..+..++.++++++. +.+++|.++++..+......|+..+...+..++++..+++|+.++++.
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~t~g~l~a~~~~~~~l~~pi~~l~~~~~~~~~a~~s~~ri~~ll~~ 310 (555)
T TIGR01194 234 ILIFIAAENFGQLLFFLLIGCALFAAAMF---ASIDAAAISAFVLALLYIKGPLEMLVSALPILAQAQIACQRLADFGER 310 (555)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 55544444444444444444455555543 789999999999999999999999999999999999999999999764
Q ss_pred ccccCCC--ccc-cC----ccCCccccEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 991 VSKIDSS--EYT-GR----TLENVMGEVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 991 ~~~~~~~--~~~-~~----~~~~~~g~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+.+.+.. .+. .. +++...+.|+|+||+|+|++.+ ..++|+|+||+|++||++|||||||||||||+++|.|
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g 390 (555)
T TIGR01194 311 FNEPEPELELSDADNVLLLAHDKSVDSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCG 390 (555)
T ss_pred hccccccccccccccccccccCCCCceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhC
Confidence 2211110 000 00 1112346799999999998532 2369999999999999999999999999999999999
Q ss_pred ccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH------------HHhhhchHHHhhhhchhhhhc
Q 040099 1062 FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA------------EMANANGFISGLQEGYDTLVG 1129 (1236)
Q Consensus 1062 ~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~------------~~a~~~~~i~~lp~Gldt~vg 1129 (1236)
+|+|++|+|.+||+|+++++.+++|+++++|+|||++|++|+++|+. +.+++++++..+|+||||.
T Consensus 391 ~~~p~~G~i~~~g~~i~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~~l~~~~~~lp~g~~t~-- 468 (555)
T TIGR01194 391 LYIPQEGEILLDGAAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQQYLQRLEIADKVKIEDGGFSTT-- 468 (555)
T ss_pred CCCCCCcEEEECCEECCCCCHHHHHhhCcEEccChhhhhhhhhcccccchhHHHHHHHHHHcCCchhhcccccccCCc--
Confidence 99999999999999999999999999999999999999999999862 6678889999999999994
Q ss_pred CCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH-H-cCCCeEEEEecCchhhhhcCEEEEEeC
Q 040099 1130 ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ-V-MVDRTTLVVAHRLSTIKNAHLIAVVSQ 1207 (1236)
Q Consensus 1130 e~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~-~-~~~~TvI~IaHRl~ti~~aD~I~Vl~~ 1207 (1236)
.+|||||||||+||||++++|+|||||||||+||++||+.+++.+.+ . .+++|+|+||||+++++.||+|+||++
T Consensus 469 ---~~LSgGq~qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~~~~d~i~~l~~ 545 (555)
T TIGR01194 469 ---TALSTGQQKRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYFELADQIIKLAA 545 (555)
T ss_pred ---ccCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEEC
Confidence 68999999999999999999999999999999999999999987643 3 368999999999999999999999999
Q ss_pred CEEEEe
Q 040099 1208 GMIVEK 1213 (1236)
Q Consensus 1208 G~Ive~ 1213 (1236)
|+|+|.
T Consensus 546 G~i~~~ 551 (555)
T TIGR01194 546 GCIVKD 551 (555)
T ss_pred CEEEEe
Confidence 999875
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-71 Score=678.83 Aligned_cols=453 Identities=22% Similarity=0.383 Sum_probs=352.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh-cc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR-EK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 462 (1236)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...++ ..
T Consensus 11 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 87 (510)
T PRK15439 11 LLCARSISKQYSG---VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTPAKAHQLG 87 (510)
T ss_pred eEEEEeEEEEeCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCHHHHHhCC
Confidence 4999999999963 4699999999999999999999999999999999999999999999999999877665554 56
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCCC--HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHAT--KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++||+|++.++.. |++||+.++..... ++++.++++.. |++........+||||||||++|||||+
T Consensus 88 i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgG~~qrv~la~aL~ 156 (510)
T PRK15439 88 IYLVPQEPLLFPNLSVKENILFGLPKRQASMQKMKQLLAAL-----------GCQLDLDSSAGSLEVADRQIVEILRGLM 156 (510)
T ss_pred EEEEeccCccCCCCcHHHHhhcccccchHHHHHHHHHHHHc-----------CCCccccCChhhCCHHHHHHHHHHHHHH
Confidence 9999999988875 99999998753211 12333333333 4443445556789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++... ....
T Consensus 157 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~--~~~~ 234 (510)
T PRK15439 157 RDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSGKTADLSTD--DIIQ 234 (510)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecChHHcCHH--HHHH
Confidence 9999999999999999999999999998875 47899999999999865 999999999999998887665421 0000
Q ss_pred hhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHH
Q 040099 618 RLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASM 697 (1236)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1236)
.+ . . .. .
T Consensus 235 ~~----~--~----~~--~------------------------------------------------------------- 241 (510)
T PRK15439 235 AI----T--P----AA--R------------------------------------------------------------- 241 (510)
T ss_pred HH----h--C----cc--c-------------------------------------------------------------
Confidence 00 0 0 00 0
Q ss_pred HhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 040099 698 TNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEV 777 (1236)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 777 (1236)
T Consensus 242 -------------------------------------------------------------------------------- 241 (510)
T PRK15439 242 -------------------------------------------------------------------------------- 241 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred ccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 778 GWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKG 857 (1236)
Q Consensus 778 ~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~ 857 (1236)
.....+. +
T Consensus 242 ---~~~~~~~---------~------------------------------------------------------------ 249 (510)
T PRK15439 242 ---EKSLSAS---------Q------------------------------------------------------------ 249 (510)
T ss_pred ---ccccccc---------c------------------------------------------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 858 FSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGA 937 (1236)
Q Consensus 858 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 937 (1236)
T Consensus 250 -------------------------------------------------------------------------------- 249 (510)
T PRK15439 250 -------------------------------------------------------------------------------- 249 (510)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEE
Q 040099 938 KLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVS 1017 (1236)
Q Consensus 938 ~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vs 1017 (1236)
+. . .. .+........ ..--++++|++
T Consensus 250 ---------------------------------------------~~-~-~~-~~~~~~~~~~------~~~~l~~~~l~ 275 (510)
T PRK15439 250 ---------------------------------------------KL-W-LE-LPGNRRQQAA------GAPVLTVEDLT 275 (510)
T ss_pred ---------------------------------------------cc-c-cc-ccccccccCC------CCceEEEeCCC
Confidence 00 0 00 0000000000 01138889988
Q ss_pred EECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-HhcceEEEcCCC
Q 040099 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQMGVVSQEP 1096 (1236)
Q Consensus 1018 f~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i~~V~Qdp 1096 (1236)
. .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+... +|++++||||++
T Consensus 276 ~--------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~v~q~~ 347 (510)
T PRK15439 276 G--------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTAQRLARGLVYLPEDR 347 (510)
T ss_pred C--------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHHHHHhCCcEECCCCh
Confidence 3 1599999999999999999999999999999999999999999999999998776554 467899999996
Q ss_pred ---CCCh-hhHHHHHHHHh---------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1097 ---VLFS-DTIRANIAEMA---------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1097 ---~LF~-gTIreNL~~~a---------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
.+|. .|+.+|+.... .+.+++..+ |++ .........||||||||++|||||+.+|+||
T Consensus 348 ~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgG~kqrl~la~al~~~p~lL 425 (510)
T PRK15439 348 QSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRAL--NIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLL 425 (510)
T ss_pred hhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHc--CCCCCCccCccccCCcHHHHHHHHHHHHhhCCCEE
Confidence 3665 49999984210 011122222 343 3345566789999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 426 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 492 (510)
T PRK15439 426 IVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGALTGAAINV 492 (510)
T ss_pred EECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccCCH
Confidence 9999999999999999999998875 47899999999999976 99999999999999999988764
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-71 Score=678.94 Aligned_cols=446 Identities=22% Similarity=0.368 Sum_probs=345.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 462 (1236)
-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|++
T Consensus 4 ~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 80 (501)
T PRK11288 4 YLSFDGIGKTFPG---VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFASTTAALAAG 80 (501)
T ss_pred eEEEeeeEEEECC---EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHhCC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999875543 456788
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|+||+|++.+|.. |++||+.++... ...++..+ .+.+.+..+ |++........+||||||||++|||
T Consensus 81 i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lar 153 (501)
T PRK11288 81 VAIIYQELHLVPEMTVAENLYLGQLPHKGGIVNRRLLNY-----EAREQLEHL--GVDIDPDTPLKYLSIGQRQMVEIAK 153 (501)
T ss_pred EEEEEechhccCCCCHHHHHHhcccccccCCCCHHHHHH-----HHHHHHHHc--CCCCCcCCchhhCCHHHHHHHHHHH
Confidence 9999999988875 999999986421 11222211 122344444 4444445566789999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYG 614 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~ 614 (1236)
||+.+|++|||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.++..+....
T Consensus 154 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--- 230 (501)
T PRK11288 154 ALARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVATFDDMAQVDR--- 230 (501)
T ss_pred HHHhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCccccCCH---
Confidence 9999999999999999999999999999998875 47899999999999865 999999999999854421000000
Q ss_pred hhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHH
Q 040099 615 AYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAI 694 (1236)
Q Consensus 615 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1236)
T Consensus 231 -------------------------------------------------------------------------------- 230 (501)
T PRK11288 231 -------------------------------------------------------------------------------- 230 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 695 ASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVY 774 (1236)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 774 (1236)
+.. ...+
T Consensus 231 ---------------------------~~~--------------------------------------------~~~~-- 237 (501)
T PRK11288 231 ---------------------------DQL--------------------------------------------VQAM-- 237 (501)
T ss_pred ---------------------------HHH--------------------------------------------HHHh--
Confidence 000 0000
Q ss_pred CCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 775 MEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKS 854 (1236)
Q Consensus 775 ~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 854 (1236)
... . .
T Consensus 238 -----~~~-~--~------------------------------------------------------------------- 242 (501)
T PRK11288 238 -----VGR-E--I------------------------------------------------------------------- 242 (501)
T ss_pred -----cCC-C--c-------------------------------------------------------------------
Confidence 000 0 0
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 855 MKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFY 934 (1236)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1236)
T Consensus 243 -------------------------------------------------------------------------------- 242 (501)
T PRK11288 243 -------------------------------------------------------------------------------- 242 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEe
Q 040099 935 VGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFL 1014 (1236)
Q Consensus 935 ~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~ 1014 (1236)
. . .....+. . . ....++++
T Consensus 243 -----------~------------------------------------~---~~~~~~~----~-~------~~~~l~~~ 261 (501)
T PRK11288 243 -----------G------------------------------------D---IYGYRPR----P-L------GEVRLRLD 261 (501)
T ss_pred -----------c------------------------------------c---ccccccc----C-C------CCcEEEEe
Confidence 0 0 0000000 0 0 01147888
Q ss_pred EEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC-hHHHhcceEEEc
Q 040099 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-VKWLRQQMGVVS 1093 (1236)
Q Consensus 1015 ~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-~~~lR~~i~~V~ 1093 (1236)
|+++. .+++|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+ .+.+|++++|+|
T Consensus 262 ~~~~~-------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~~~ 334 (501)
T PRK11288 262 GLKGP-------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSPRDAIRAGIMLCP 334 (501)
T ss_pred ccccC-------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCHHHHHhCCCEEcC
Confidence 98742 3899999999999999999999999999999999999999999999999987543 345678999999
Q ss_pred CCCC---CC-hhhHHHHHHHHh------------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1094 QEPV---LF-SDTIRANIAEMA------------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1094 Qdp~---LF-~gTIreNL~~~a------------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
|+|. +| ..|+.||+.... .+.+++..+ |++ ........+||||||||++|||||+
T Consensus 335 q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrl~la~al~ 412 (501)
T PRK11288 335 EDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSL--NIKTPSREQLIMNLSGGNQQKAILGRWLS 412 (501)
T ss_pred cCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhc--CcccCCccCccccCCHHHHHHHHHHHHHc
Confidence 9973 55 479999984110 011122221 332 2234456789999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
.+|++|||||||++||+.+.+.+.+.|+++. .+.|+|+|||+++.+.. ||+|++|++|++++.|+++|..
T Consensus 413 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 484 (501)
T PRK11288 413 EDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELAREQAT 484 (501)
T ss_pred cCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEccccCC
Confidence 9999999999999999999999999998865 47899999999999965 9999999999999999988764
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-71 Score=677.06 Aligned_cols=450 Identities=22% Similarity=0.360 Sum_probs=345.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHH-Hhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKW-IRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~-~r~ 461 (1236)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+... .++
T Consensus 2 l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (500)
T TIGR02633 2 LEMKGIVKTFGG---VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNIRDTERA 78 (500)
T ss_pred EEEEeEEEEeCC---eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCHHHHHhC
Confidence 789999999963 4699999999999999999999999999999999999987 7999999999998766544 467
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCCC------CCHHHHHHHHHHhccHHHHHhCCCCccccc-cCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKTH------ATKEEIQAAAEAANASHFIKNLPQGLDTNV-GEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~g~~LSgGqkqRia 533 (1236)
+|+||+|++.++.. |++||+.++... ...++..+ .+.+.++.+ |++... .....+||||||||++
T Consensus 79 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 151 (500)
T TIGR02633 79 GIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYL-----RAKNLLREL--QLDADNVTRPVGDYGGGQQQLVE 151 (500)
T ss_pred CEEEEeeccccCCCCcHHHHHHhhccccccccccCHHHHHH-----HHHHHHHHc--CCCCCcccCchhhCCHHHHHHHH
Confidence 89999999988765 999999986421 11222211 122334443 343222 2345689999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 152 iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (500)
T TIGR02633 152 IAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATKDMSTMSED 231 (500)
T ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeecCcccCCHH
Confidence 9999999999999999999999999999999998874 47899999999999875 999999999999866532211000
Q ss_pred ccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHH
Q 040099 612 PYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLL 691 (1236)
Q Consensus 612 ~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 691 (1236)
..
T Consensus 232 ------~~------------------------------------------------------------------------ 233 (500)
T TIGR02633 232 ------DI------------------------------------------------------------------------ 233 (500)
T ss_pred ------HH------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 692 GAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEK 771 (1236)
Q Consensus 692 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ 771 (1236)
.. .
T Consensus 234 ----------------------~~-------------------------------------------------------~ 236 (500)
T TIGR02633 234 ----------------------IT-------------------------------------------------------M 236 (500)
T ss_pred ----------------------HH-------------------------------------------------------H
Confidence 00 0
Q ss_pred HhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Q 040099 772 VVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQ 851 (1236)
Q Consensus 772 ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~ 851 (1236)
++.. .
T Consensus 237 -------~~~~-~------------------------------------------------------------------- 241 (500)
T TIGR02633 237 -------MVGR-E------------------------------------------------------------------- 241 (500)
T ss_pred -------HhCc-c-------------------------------------------------------------------
Confidence 0000 0
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 852 MKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAV 931 (1236)
Q Consensus 852 ~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 931 (1236)
T Consensus 242 -------------------------------------------------------------------------------- 241 (500)
T TIGR02633 242 -------------------------------------------------------------------------------- 241 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccE
Q 040099 932 TFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEV 1011 (1236)
Q Consensus 932 ~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I 1011 (1236)
.. ...+.... . .. .--+
T Consensus 242 -------------~~------------------------------------------~~~~~~~~-~-----~~--~~~l 258 (500)
T TIGR02633 242 -------------IT------------------------------------------SLYPHEPH-E-----IG--DVIL 258 (500)
T ss_pred -------------cc------------------------------------------cccccccc-C-----CC--CceE
Confidence 00 00000000 0 00 1148
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeecccCC-hHHHhcce
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQKLQ-VKWLRQQM 1089 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~~i~-~~~lR~~i 1089 (1236)
+++|++++|+..++..+|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.++|.++...+ ...+|+++
T Consensus 259 ~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~~~~~~~~i 338 (500)
T TIGR02633 259 EARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNPAQAIRAGI 338 (500)
T ss_pred EEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCHHHHHhCCC
Confidence 999999999532123589999999999999999999999999999999999995 8999999999986543 35678899
Q ss_pred EEEcCCC---CCCh-hhHHHHHHH-----Hhh------------hchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHH
Q 040099 1090 GVVSQEP---VLFS-DTIRANIAE-----MAN------------ANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1090 ~~V~Qdp---~LF~-gTIreNL~~-----~a~------------~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLAR 1147 (1236)
+||||++ .+|. .|+++|+.. ... +.++++.+ |+.. ........||||||||++|||
T Consensus 339 ~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~la~ 416 (500)
T TIGR02633 339 AMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRL--KVKTASPFLPIGRLSGGNQQKAVLAK 416 (500)
T ss_pred EEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhc--CccCCCccCccccCCHHHHHHHHHHH
Confidence 9999996 3665 599999852 110 11112221 2321 233455689999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
||+++|++|||||||++||+.+.+.+++.|+++. ++.|+|+|||+++.+.. ||+|++|++|+++..++.+++
T Consensus 417 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 490 (500)
T TIGR02633 417 MLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDFVNHAL 490 (500)
T ss_pred HHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999999999998864 47899999999999975 999999999999988765543
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-69 Score=708.12 Aligned_cols=220 Identities=24% Similarity=0.434 Sum_probs=187.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+++|+++.|+++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +....|++
T Consensus 927 ~~L~I~nLsK~y~~~-~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~-~~~~~r~~ 1004 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPS-GRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIET-NLDAVRQS 1004 (2272)
T ss_pred ceEEEEeEEEEecCC-CceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcc-hHHHHhhc
Confidence 469999999999632 3579999999999999999999999999999999999999999999999999864 45667889
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|||||++.+|+. |++|||.++.. ....++.++ .+++.++.+ |++........+||||||||++|||||+
T Consensus 1005 IG~~pQ~~~L~~~LTV~E~L~f~~~lkg~~~~~~~~-----~v~~lL~~v--gL~~~~~~~~~~LSGGqKQRLsLArALi 1077 (2272)
T TIGR01257 1005 LGMCPQHNILFHHLTVAEHILFYAQLKGRSWEEAQL-----EMEAMLEDT--GLHHKRNEEAQDLSGGMQRKLSVAIAFV 1077 (2272)
T ss_pred EEEEecCCcCCCCCCHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHH
Confidence 9999999999875 99999987521 112222211 112233333 4555556667799999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
.+|+|||||||||+||+.+++.+++.|+++.+|+|+|++||+++.+.. ||||++|++|++++.|+.++|.++
T Consensus 1078 ~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs~~~Lk~~ 1150 (2272)
T TIGR01257 1078 GDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGTPLFLKNC 1150 (2272)
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999999998778999999999999975 999999999999999999998765
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-71 Score=673.34 Aligned_cols=443 Identities=20% Similarity=0.345 Sum_probs=344.7
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcceEE
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGL 465 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~ 465 (1236)
++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++++++|
T Consensus 1 ~~nl~~~~~~---~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~ 77 (491)
T PRK10982 1 MSNISKSFPG---VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSSKEALENGISM 77 (491)
T ss_pred CCceEEEeCC---EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCHHHHHhCCEEE
Confidence 4689999963 469999999999999999999999999999999999999999999999999876554 445778999
Q ss_pred EccCCCCCc-hhHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 466 VSQEPVLLS-SSIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 466 v~Q~~~l~~-~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
|+|++.++. .|++||+.++... .+.++..+ .+.+.+..+ |++........+||||||||++|||||+
T Consensus 78 v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lA~al~ 150 (491)
T PRK10982 78 VHQELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMYR-----DTKAIFDEL--DIDIDPRAKVATLSVSQMQMIEIAKAFS 150 (491)
T ss_pred EecccccccCCCHHHHhhcccccccccccCHHHHHH-----HHHHHHHHc--CCCCCccCchhhCCHHHHHHHHHHHHHH
Confidence 999998775 5999999986421 12222211 123344444 5555566677899999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
.+|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+.+++...
T Consensus 151 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~------ 224 (491)
T PRK10982 151 YNAKIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQPLAGLTMD------ 224 (491)
T ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecChhhCCHH------
Confidence 9999999999999999999999999998875 47899999999999865 999999999999987764432100
Q ss_pred hhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHH
Q 040099 618 RLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASM 697 (1236)
Q Consensus 618 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 697 (1236)
+..
T Consensus 225 ~~~----------------------------------------------------------------------------- 227 (491)
T PRK10982 225 KII----------------------------------------------------------------------------- 227 (491)
T ss_pred HHH-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc
Q 040099 698 TNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEV 777 (1236)
Q Consensus 698 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~ 777 (1236)
. .+
T Consensus 228 -----------------~-------------------------------------------------------~~----- 230 (491)
T PRK10982 228 -----------------A-------------------------------------------------------MM----- 230 (491)
T ss_pred -----------------H-------------------------------------------------------HH-----
Confidence 0 00
Q ss_pred ccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 778 GWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKG 857 (1236)
Q Consensus 778 ~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~ 857 (1236)
+.. .
T Consensus 231 --~~~-~------------------------------------------------------------------------- 234 (491)
T PRK10982 231 --VGR-S------------------------------------------------------------------------- 234 (491)
T ss_pred --hCC-C-------------------------------------------------------------------------
Confidence 000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 858 FSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGA 937 (1236)
Q Consensus 858 ~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 937 (1236)
T Consensus 235 -------------------------------------------------------------------------------- 234 (491)
T PRK10982 235 -------------------------------------------------------------------------------- 234 (491)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEE
Q 040099 938 KLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVS 1017 (1236)
Q Consensus 938 ~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vs 1017 (1236)
. .. ..+.. . . .+ ....|+++|++
T Consensus 235 -------~------------------------------------~~-----~~~~~-~--~----~~--~~~~i~~~~l~ 257 (491)
T PRK10982 235 -------L------------------------------------TQ-----RFPDK-E--N----KP--GEVILEVRNLT 257 (491)
T ss_pred -------c------------------------------------cc-----ccccc-c--C----CC--CCcEEEEeCcc
Confidence 0 00 00000 0 0 00 01148999999
Q ss_pred EECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH-HHhcceEEEcCCC
Q 040099 1018 FKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK-WLRQQMGVVSQEP 1096 (1236)
Q Consensus 1018 f~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~-~lR~~i~~V~Qdp 1096 (1236)
++|. ++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+||.++...+.. .+|+.++|+||++
T Consensus 258 ~~~~-----~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~i~~~~q~~ 332 (491)
T PRK10982 258 SLRQ-----PSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNANEAINHGFALVTEER 332 (491)
T ss_pred cccC-----cccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCHHHHHHCCCEEcCCch
Confidence 9752 489999999999999999999999999999999999999999999999999876643 4578899999996
Q ss_pred C---CCh-hhHHHH-----HHHHh---h----------hchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1097 V---LFS-DTIRAN-----IAEMA---N----------ANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1097 ~---LF~-gTIreN-----L~~~a---~----------~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
. +|. .|+.+| +.... + +.+++..+ |+. -.......+||||||||++||||++++|
T Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~~p 410 (491)
T PRK10982 333 RSTGIYAYLDIGFNSLISNIRNYKNKVGLLDNSRMKSDTQWVIDSM--RVKTPGHRTQIGSLSGGNQQKVIIGRWLLTQP 410 (491)
T ss_pred hhCCcccCCcHHHheehhhhhhhcccccccCcHHHHHHHHHHHHhc--CccCCCcccccccCCcHHHHHHHHHHHHhcCC
Confidence 3 555 477666 32111 1 11122222 231 1235566789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+++..++.+++
T Consensus 411 ~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~~~~~~ 478 (491)
T PRK10982 411 EILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIVDTKTT 478 (491)
T ss_pred CEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEEccccC
Confidence 9999999999999999999999998764 57899999999999965 999999999999988876544
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-69 Score=602.16 Aligned_cols=511 Identities=22% Similarity=0.263 Sum_probs=446.3
Q ss_pred hhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q 040099 699 NGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVG 778 (1236)
Q Consensus 699 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~ 778 (1236)
-.+.....+.++.+..|-...+.+ .........+.+.+.++..++..++..++.+.+.++..+++..+|...++++..
T Consensus 35 INiL~L~~~lyMLQVyDRVL~S~s--~~TLv~Ltvlal~ly~~~glLd~iR~~~l~Rig~~lD~~L~~~v~~a~~~~~l~ 112 (580)
T COG4618 35 INLLALTGPLYMLQVYDRVLPSRS--VPTLVMLTVLALGLYAFQGLLDAIRSRVLVRIGERLDRQLNGPVFAASFSAPLL 112 (580)
T ss_pred HHHHHHhhhHHHHHHHhhhccCCC--cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHh
Confidence 334444445555555555443221 112223334444556667788899999999999999999999999999766654
Q ss_pred cccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 779 WFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGF 858 (1236)
Q Consensus 779 ~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~ 858 (1236)
- +..|+=..- -+|.++++.+++..-...+...-.+-+.+.+.|.++++++++.++...+++.+.++..+..++.
T Consensus 113 ~-----~~~g~~~Q~-LrDL~qvR~Fltg~g~~A~fDaPW~P~yl~v~fl~Hp~lG~~a~~ga~iLv~la~ln~~~t~~p 186 (580)
T COG4618 113 R-----RGSGDGLQP-LRDLDQVRQFLTGTGLTAFFDAPWMPLYLAVIFLFHPWLGLIALAGAIILVVLALLNERATRKP 186 (580)
T ss_pred h-----cCCCccccc-hhhHHHHHHHHcCCCcchhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3 223332222 3799999999988666666666666666777888999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 859 SANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAK 938 (1236)
Q Consensus 859 ~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 938 (1236)
.++..+...+.+.+...+.+|.++|+++|+.....++|.+....+...+.+..-..+...+++..+-+..+..++.+|+|
T Consensus 187 ~~eA~~~~~~~~~~~~a~~RNAEvi~AMGM~~~l~~rW~~~~~~~L~~~~~asd~~~~~~~~Sr~~Rm~lQs~iLg~GA~ 266 (580)
T COG4618 187 LKEASEASIRANQLADATLRNAEVIEAMGMLGNLAKRWGRFNAAYLSAQERASDRNGAFGALSRALRMALQSAVLGLGAW 266 (580)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhccee
Confidence 88888888889999999999999999999999999999999999999988888889999999999999999999999999
Q ss_pred HHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEE
Q 040099 939 LVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSF 1018 (1236)
Q Consensus 939 lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf 1018 (1236)
|+..|++|.|.+++-.........|+......|..+..++.+..|+.++++..|...+ ..+.|..+|.+..+++++
T Consensus 267 Lvi~ge~t~G~mIA~SIl~gRaLaPid~aI~~Wkq~~~Ar~s~~Rl~~lL~~~p~~~~----~m~LP~P~g~L~Ve~l~~ 342 (580)
T COG4618 267 LVIKGEITPGMMIAGSILSGRALAPIDLAIANWKQFVAARQSYKRLNELLAELPAAAE----RMPLPAPQGALSVERLTA 342 (580)
T ss_pred eEEcCcCCcchhhHHHHHhhhhhccHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccC----CCCCCCCCceeeEeeeee
Confidence 9999999999999998889999999999999999999999999999999987665432 234566789999999999
Q ss_pred ECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCC
Q 040099 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098 (1236)
Q Consensus 1019 ~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~L 1098 (1236)
.-|+. ++++|+|+||+++|||-+|||||||||||||.++|.|.++|.+|+|.+||.|+++++.+++-++|||.|||..|
T Consensus 343 ~PPg~-~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd~e~lG~hiGYLPQdVeL 421 (580)
T COG4618 343 APPGQ-KKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWDREQLGRHIGYLPQDVEL 421 (580)
T ss_pred cCCCC-CCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCCHHHhccccCcCccccee
Confidence 87765 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1099 FSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1099 F~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
|+|||+|||+ +.|++||.|.++|+||||.||++|..|||||||||+|||||+.||.+++||||.|
T Consensus 422 F~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~iG~~G~~LSgGQRQRIaLARAlYG~P~lvVLDEPNs 501 (580)
T COG4618 422 FDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEPNS 501 (580)
T ss_pred cCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCccCCCCCCCCchHHHHHHHHHHHcCCCcEEEecCCCC
Confidence 9999999995 6789999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1164 ALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1164 aLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||.+-|+.+.++|.+.. +|+|+|+||||++.+..+|+|+||++|++..+|+-+|.+++
T Consensus 502 NLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L~~~Dkilvl~~G~~~~FG~r~eVLa~ 561 (580)
T COG4618 502 NLDSEGEAALAAAILAAKARGGTVVVIAHRPSALASVDKILVLQDGRIAAFGPREEVLAK 561 (580)
T ss_pred CcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHHhhcceeeeecCChHHhcCCHHHHHHH
Confidence 999999999999998865 68999999999999999999999999999999999999886
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-70 Score=664.47 Aligned_cols=445 Identities=22% Similarity=0.285 Sum_probs=341.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 4 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~~~~~~~i~ 80 (490)
T PRK10938 4 LQISQGTFRLSD---TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSFEQLQKLVS 80 (490)
T ss_pred EEEEeEEEEcCC---eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCHHHHHHHhc
Confidence 899999999963 35999999999999999999999999999999999999999999999998887666666777899
Q ss_pred EEccCCCC--C-------chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 465 LVSQEPVL--L-------SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 465 ~v~Q~~~l--~-------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
|++|++.+ + ..|++||+.++. ..++++.++++..++.+. ......+||||||||++||
T Consensus 81 ~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrv~la 147 (490)
T PRK10938 81 DEWQRNNTDMLSPGEDDTGRTTAEIIQDEV--KDPARCEQLAQQFGITAL-----------LDRRFKYLSTGETRKTLLC 147 (490)
T ss_pred eeccCcchhhcccchhhccccHHHhcccch--hHHHHHHHHHHHcCCHhh-----------hhCCcccCCHHHHHHHHHH
Confidence 99998743 2 358999987542 123445555555554433 3444568999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+.. ||+|++|++|+++..|+.+++...+
T Consensus 148 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~- 226 (490)
T PRK10938 148 QALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETGEREEILQQA- 226 (490)
T ss_pred HHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeCCHHHHhcch-
Confidence 999999999999999999999999999999998754 6899999999999866 9999999999999888765543210
Q ss_pred chhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHH
Q 040099 614 GAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGA 693 (1236)
Q Consensus 614 ~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 693 (1236)
...++..
T Consensus 227 -~~~~~~~------------------------------------------------------------------------ 233 (490)
T PRK10938 227 -LVAQLAH------------------------------------------------------------------------ 233 (490)
T ss_pred -hhhhhhh------------------------------------------------------------------------
Confidence 0000000
Q ss_pred HHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 694 IASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVV 773 (1236)
Q Consensus 694 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll 773 (1236)
. +++
T Consensus 234 ---------------------------~------------------------------------------------~~~- 237 (490)
T PRK10938 234 ---------------------------S------------------------------------------------EQL- 237 (490)
T ss_pred ---------------------------h------------------------------------------------hcc-
Confidence 0 000
Q ss_pred cCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 774 YMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK 853 (1236)
Q Consensus 774 ~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~ 853 (1236)
... ..+.
T Consensus 238 ------~~~-~~~~------------------------------------------------------------------ 244 (490)
T PRK10938 238 ------EGV-QLPE------------------------------------------------------------------ 244 (490)
T ss_pred ------Ccc-ccCc------------------------------------------------------------------
Confidence 000 0000
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTF 933 (1236)
Q Consensus 854 ~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 933 (1236)
T Consensus 245 -------------------------------------------------------------------------------- 244 (490)
T PRK10938 245 -------------------------------------------------------------------------------- 244 (490)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEE
Q 040099 934 YVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQF 1013 (1236)
Q Consensus 934 ~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f 1013 (1236)
.. .+.... .. . ....-|++
T Consensus 245 ------------------------------------------------------~~-~~~~~~-~~---~--~~~~~l~~ 263 (490)
T PRK10938 245 ------------------------------------------------------PD-EPSARH-AL---P--ANEPRIVL 263 (490)
T ss_pred ------------------------------------------------------cc-cccccc-cc---C--CCCceEEE
Confidence 00 000000 00 0 00124899
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeeccc-CChHHHhcceEE
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQK-LQVKWLRQQMGV 1091 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~~-i~~~~lR~~i~~ 1091 (1236)
+|++++|+++ .+|+|+||+|++||++||+||||||||||+++|.|+.+| ++|+|+++|.++.. .+...+|++++|
T Consensus 264 ~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~~~~~~~~i~~ 340 (490)
T PRK10938 264 NNGVVSYNDR---PILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGETIWDIKKHIGY 340 (490)
T ss_pred eceEEEECCe---eEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCCHHHHHhhceE
Confidence 9999999743 489999999999999999999999999999999999876 69999999987632 233457889999
Q ss_pred EcCCCCCCh---hhHHHHHHHHh----------------hhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1092 VSQEPVLFS---DTIRANIAEMA----------------NANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1092 V~Qdp~LF~---gTIreNL~~~a----------------~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
++|++.++. .|+++++.... .+.+.++.+ |++. ........||||||||++|||||++
T Consensus 341 v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGq~qrv~la~al~~ 418 (490)
T PRK10938 341 VSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDIL--GIDKRTADAPFHSLSWGQQRLALIVRALVK 418 (490)
T ss_pred ECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc--CCchhhccCchhhCCHHHHHHHHHHHHHhc
Confidence 999986642 36776653110 011122221 4544 4455667899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhhhh--cCEEEEEeCCEEEEec
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV-D-RTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~-~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~G 1214 (1236)
+|+||||||||++||+.+.+.+.+.|+++.+ + .|+|+|||+++.+.. ||++++|++|+|++.-
T Consensus 419 ~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~ 485 (490)
T PRK10938 419 HPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYV 485 (490)
T ss_pred CCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEee
Confidence 9999999999999999999999999998753 3 469999999999964 7999999999998754
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-67 Score=660.39 Aligned_cols=531 Identities=15% Similarity=0.119 Sum_probs=448.0
Q ss_pred hHHHHHHhhchhhH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDS----VLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVAS 121 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 121 (1236)
.++++++|++||++ ..+++.+++.++.+++....|++.+.++|.+... +...+...+..++++++++.++..+..
T Consensus 78 ~~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~-~~~~f~~~l~~~~l~~~~~~~~~~~~~ 156 (659)
T TIGR00954 78 KLDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRR-SPRNFAWILFKWFLIAPPASFINSAIK 156 (659)
T ss_pred HHHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhc-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36678888988865 2456667777778888889999999999987643 221222223333444455556667778
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 122 FFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAF 201 (1236)
Q Consensus 122 ~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (1236)
|+..++......++..++|..+|++....++.+||+ ++|++++|+++|++.+.+.+...+..++..++.+++.+++++
T Consensus 157 ~~~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~--~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~ 234 (659)
T TIGR00954 157 YLLKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS--RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLL 234 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC--CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888999999999999999999999999985 689999999999999999999999999999999998888788
Q ss_pred H-HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHH
Q 040099 202 F-KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKS 280 (1236)
Q Consensus 202 ~-~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~ 280 (1236)
. ++|.+++++++.+|+.+++..++.+++.+..++.++..+++++.++|.++|+++||+|+.|+.+.++|++..++..+.
T Consensus 235 ~~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~ 314 (659)
T TIGR00954 235 TALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEH 314 (659)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 6 999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHHHHHHH--HHHHHHHHHHHHHH-h----cCcChhHHHH-HHHH---HHHHHHHHHHHHHHHHHHH
Q 040099 281 SVQEGLATGLGLGASVFIIFS--AYGLGVWYGAKLIL-E----KGYSGGDVMS-VIFG---VLIGSMSLGQASPCLSAFA 349 (1236)
Q Consensus 281 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~~v~-~----g~~t~g~~~~-~~~~---~~~~~~~l~~~~~~~~~~~ 349 (1236)
..+..+..+...++..++... ..++.++.|...+. + |.+|.|.+++ |+.+ +.....|+..+...+..++
T Consensus 315 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~ 394 (659)
T TIGR00954 315 LNLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMT 394 (659)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999988888877653 23333334443332 2 7899998877 5544 4455789999999999999
Q ss_pred HHHHHHHHHHHHhccCCCcccc--------c-cCC-------------CCCCCCCCcEEEEeEEEECCCCCCCcccccee
Q 040099 350 AGQAAAFKFFEAINRKPEIDLC--------C-VNG-------------KKLDDIRGDIELKDVNFSYPARPDEQILNGFC 407 (1236)
Q Consensus 350 ~~~~s~~ri~~~l~~~~~~~~~--------~-~~~-------------~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~ 407 (1236)
++.++.+|++++++.+++.+.. . .+. .......+.|+++||+|+|++ ++++|+|+|
T Consensus 395 ~~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~--~~~il~~is 472 (659)
T TIGR00954 395 RLAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPN--GDVLIESLS 472 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCC--CCeeeecce
Confidence 9999999999999864432100 0 000 001112356999999999973 346999999
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC--
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-- 485 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~-- 485 (1236)
|+|++||+++|+||||||||||+++|+|+++|++|+|.+++ |++++||+|+|++|++|++|||.++.
T Consensus 473 l~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~ 541 (659)
T TIGR00954 473 FEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSS 541 (659)
T ss_pred EEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCCh
Confidence 99999999999999999999999999999999999999874 56899999999999999999999974
Q ss_pred -----CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHH
Q 040099 486 -----THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560 (1236)
Q Consensus 486 -----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~ 560 (1236)
+..++++++++++.+++++++.+ |.|+||..+ .+.+||||||||++||||++++|+++|||||||+||+++++
T Consensus 542 ~~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~ 619 (659)
T TIGR00954 542 EDMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEG 619 (659)
T ss_pred hhhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHH
Confidence 33567889999999999999988 999999986 56799999999999999999999999999999999999999
Q ss_pred HHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 561 MVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 561 ~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
.+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 620 ~l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 620 YMYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 999999874 8999999999999999999999973
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-68 Score=713.24 Aligned_cols=204 Identities=23% Similarity=0.374 Sum_probs=175.8
Q ss_pred cEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC---CCCcEEEECCeecccCChHHH
Q 040099 1010 EVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD---PSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~---~~~G~I~idG~di~~i~~~~l 1085 (1236)
.++++||++.|+.++ ++++|+|||++|+|||++||+||||||||||+++|.|+.+ |++|+|++||.++. ..+
T Consensus 759 ~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~----~~~ 834 (1394)
T TIGR00956 759 IFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLD----SSF 834 (1394)
T ss_pred eEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECC----hhh
Confidence 378999999996322 3469999999999999999999999999999999999997 78899999999985 257
Q ss_pred hcceEEEcCCCC-CChhhHHHHHHHHhh---------------hchHHH--hhhhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1086 RQQMGVVSQEPV-LFSDTIRANIAEMAN---------------ANGFIS--GLQEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1086 R~~i~~V~Qdp~-LF~gTIreNL~~~a~---------------~~~~i~--~lp~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
|++++||+|++. ++..||||||.-.+. +.+.++ .+.+..|+.+|+.|.+||||||||++|||
T Consensus 835 ~~~i~yv~Q~~~~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~~d~~v~~~~~~LSgGqrqRl~Ia~ 914 (1394)
T TIGR00956 835 QRSIGYVQQQDLHLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESYADAVVGVPGEGLNVEQRKRLTIGV 914 (1394)
T ss_pred hcceeeecccccCCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhCCCeeCCCCCCCCHHHhhHHHHHH
Confidence 899999999875 556799999962221 122333 23456789999888899999999999999
Q ss_pred HHccCCC-EEEEecCCCCCCHHHHHHHHHHHHHH-cCCCeEEEEecCchhh--hhcCEEEEEeCC-EEEEecChh
Q 040099 1148 AIVKEPK-ILLLDEATSALDIESERVVQDALDQV-MVDRTTLVVAHRLSTI--KNAHLIAVVSQG-MIVEKGSHE 1217 (1236)
Q Consensus 1148 ALlr~p~-ILlLDEaTSaLD~~te~~I~~~L~~~-~~~~TvI~IaHRl~ti--~~aD~I~Vl~~G-~Ive~Gt~~ 1217 (1236)
||+.+|+ ||+||||||+||+.+...|++.|++. .+|+|+|+++|+++.. ..+|+|++|++| ++++.|++.
T Consensus 915 aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~~~ 989 (1394)
T TIGR00956 915 ELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGDLG 989 (1394)
T ss_pred HHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECCcc
Confidence 9999997 99999999999999999999999987 4679999999999974 569999999997 999999974
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-69 Score=661.72 Aligned_cols=475 Identities=22% Similarity=0.392 Sum_probs=337.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. .+|+
T Consensus 2 l~i~~ls~~~~~---~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~-----------~~i~ 67 (530)
T PRK15064 2 LSTANITMQFGA---KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN-----------ERLG 67 (530)
T ss_pred EEEEEEEEEeCC---cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC-----------CEEE
Confidence 789999999963 46999999999999999999999999999999999999999999999872 4699
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCC----------------CHH---HHHHH----------HHHhccHHHHHhCCCCcc
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHA----------------TKE---EIQAA----------AEAANASHFIKNLPQGLD 514 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~----------------~~~---~~~~~----------~~~~~~~~~i~~l~~g~~ 514 (1236)
|++|++.+|.. |++||+.++.... ..+ .+.+. .....+.+.+..+ |++
T Consensus 68 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~ 145 (530)
T PRK15064 68 KLRQDQFAFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV--GIP 145 (530)
T ss_pred EEeccCCcCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC--CCC
Confidence 99999988765 9999998753100 000 00000 0011223444444 554
Q ss_pred ccc-cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEE
Q 040099 515 TNV-GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIA 592 (1236)
Q Consensus 515 t~~-g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~ 592 (1236)
... .....+||||||||++|||||+.+|++|||||||++||+.+..++.+.|.+ .+.|+|+|||+++.+.. ||+|+
T Consensus 146 ~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d~i~ 223 (530)
T PRK15064 146 EEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCTHMA 223 (530)
T ss_pred hhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcceEE
Confidence 322 345678999999999999999999999999999999999999999999975 47899999999999865 99999
Q ss_pred EEECCEEE-EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCC
Q 040099 593 VIQQGKIV-EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPP 671 (1236)
Q Consensus 593 vl~~G~i~-~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 671 (1236)
+|++|+++ +.|+++++++.....+....+.. ..
T Consensus 224 ~l~~g~i~~~~g~~~~~~~~~~~~~~~~~~~~------~~---------------------------------------- 257 (530)
T PRK15064 224 DLDYGELRVYPGNYDEYMTAATQARERLLADN------AK---------------------------------------- 257 (530)
T ss_pred EEeCCEEEEecCCHHHHHHHHHHHHHHHHHHH------HH----------------------------------------
Confidence 99999994 77877765432000000000000 00
Q ss_pred cchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 672 DVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMY 751 (1236)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 751 (1236)
. ..+ ..
T Consensus 258 -----------------------------------------~-------~~~-~~------------------------- 263 (530)
T PRK15064 258 -----------------------------------------K-------KAQ-IA------------------------- 263 (530)
T ss_pred -----------------------------------------H-------HHH-HH-------------------------
Confidence 0 000 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 752 CFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACW 831 (1236)
Q Consensus 752 ~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~ 831 (1236)
+++. ...+. . ..
T Consensus 264 -----------~~~~-~~~~~--------~--~~---------------------------------------------- 275 (530)
T PRK15064 264 -----------ELQS-FVSRF--------S--AN---------------------------------------------- 275 (530)
T ss_pred -----------HHHH-HHHHh--------h--cc----------------------------------------------
Confidence 0000 00000 0 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHH
Q 040099 832 QLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQG 911 (1236)
Q Consensus 832 ~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~ 911 (1236)
.... ...
T Consensus 276 ---------------------------~~~~-----------------------------------------~~~----- 282 (530)
T PRK15064 276 ---------------------------ASKA-----------------------------------------KQA----- 282 (530)
T ss_pred ---------------------------chhh-----------------------------------------HHH-----
Confidence 0000 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hhc
Q 040099 912 LMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGL-IDQ 990 (1236)
Q Consensus 912 ~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~-~~~ 990 (1236)
.....++.+. ...
T Consensus 283 ------------------------------------------------------------------~~~~~~~~~~~~~~ 296 (530)
T PRK15064 283 ------------------------------------------------------------------TSRAKQIDKIKLEE 296 (530)
T ss_pred ------------------------------------------------------------------HHHHHHHhhccccc
Confidence 0000000000 000
Q ss_pred cccc-CCCccc--cCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC
Q 040099 991 VSKI-DSSEYT--GRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067 (1236)
Q Consensus 991 ~~~~-~~~~~~--~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~ 1067 (1236)
.+.. ...... ..........|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~ 373 (530)
T PRK15064 297 VKPSSRQNPFIRFEQDKKLHRNALEVENLTKGFDNG---PLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDS 373 (530)
T ss_pred cCCccccCceeeCCCCCCCCCceEEEEeeEEeeCCc---eeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCC
Confidence 0000 000000 00000012259999999999743 58999999999999999999999999999999999999999
Q ss_pred cEEEECCeecccCChHHHhcceEEEcCCCC--CCh-hhHHHHHHHHh-------hhchHHHhhhhchh-hhhcCCCCCCC
Q 040099 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPV--LFS-DTIRANIAEMA-------NANGFISGLQEGYD-TLVGERGVQLS 1136 (1236)
Q Consensus 1068 G~I~idG~di~~i~~~~lR~~i~~V~Qdp~--LF~-gTIreNL~~~a-------~~~~~i~~lp~Gld-t~vge~G~~LS 1136 (1236)
|+|.++| +++++||||++. ++. .|+++|+.... .+.+.+..+ |+. ........+||
T Consensus 374 G~i~~~~-----------~~~i~~~~q~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS 440 (530)
T PRK15064 374 GTVKWSE-----------NANIGYYAQDHAYDFENDLTLFDWMSQWRQEGDDEQAVRGTLGRL--LFSQDDIKKSVKVLS 440 (530)
T ss_pred eEEEECC-----------ceEEEEEcccccccCCCCCcHHHHHHHhccCCccHHHHHHHHHHc--CCChhHhcCcccccC
Confidence 9999997 257999999974 443 59999985221 112222222 332 34556778999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-Eec
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIV-EKG 1214 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv-e~G 1214 (1236)
||||||++||||++++|+||||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|++|+++ +.|
T Consensus 441 gGq~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~~~g 518 (530)
T PRK15064 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVDFSG 518 (530)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEEcCC
Confidence 99999999999999999999999999999999999999999886 5699999999999976 9999999999998 789
Q ss_pred ChhHHhhc
Q 040099 1215 SHESLIST 1222 (1236)
Q Consensus 1215 t~~eLl~~ 1222 (1236)
++++++..
T Consensus 519 ~~~~~~~~ 526 (530)
T PRK15064 519 TYEEYLRS 526 (530)
T ss_pred CHHHHHHH
Confidence 99998875
|
|
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-65 Score=632.20 Aligned_cols=522 Identities=18% Similarity=0.169 Sum_probs=399.2
Q ss_pred hcCCchHHHHHHHHHHHHhhHHHHH-HHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 681 LNSPEVPALLLGAIASMTNGIIIPI-FGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCK 759 (1236)
Q Consensus 681 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 759 (1236)
+.++.++.++++++++++..++... .+++...+++..... .. ....++++.++..++.++..+...+.+.+
T Consensus 7 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~i~~~lid~~~~~----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (547)
T PRK10522 7 VWRQYRWPFISVMALSLASAALGIGLIAFINQRLIETADTS----LL----VLPEFLGLLLLLMAVTLGSQLALTTLGHH 78 (547)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccc----ch----HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345555666666666655555444 244455555543210 00 11112222333345667788888999999
Q ss_pred HHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 040099 760 LIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLA 839 (1236)
Q Consensus 760 ~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~ 839 (1236)
+..++|.++|++++++|++||+ ++++|++++|+++|++.+...+. .+..++..++.+++.++++++++|.+++++++
T Consensus 79 ~~~~lR~~l~~~ll~~~~~~~~--~~~~g~~lsrl~~dv~~i~~~~~-~l~~~~~~~~~~i~~~~~l~~~~~~l~li~l~ 155 (547)
T PRK10522 79 FVYRLRSEFIKRILDTHVERIE--QLGSASLLASLTSDVRNITIAFV-RLPELVQGIILTLGSAAYLAWLSPKMLLVTAI 155 (547)
T ss_pred HHHHHHHHHHHHHHhCCHHHHh--ccCccchHHHHHhhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Confidence 9999999999999999999998 48899999999999999998765 46777888888888999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccH---HHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 040099 840 IFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAE---EKVMKLYKKKCEGPIKAGIRQGLMSGI 916 (1236)
Q Consensus 840 ~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 916 (1236)
.+|+.+++.++..++.++..++.++..++..+.+.|.++|+++++ ++.+ +.+.++|.+..++..+...+.......
T Consensus 156 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~i~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (547)
T PRK10522 156 WMAVTIWGGFVLVARVYKHMATLRETEDKLYNDYQTVLEGRKELT-LNRERAEYVFENEYEPDAQEYRHHIIRADTFHLS 234 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhh-ccHHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHH
Confidence 999988888888888777778888888899999999999999995 5443 456778888777776665554444433
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 040099 917 GFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDS 996 (1236)
Q Consensus 917 ~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~ 996 (1236)
...+...+.....++.++++... +..+.+.+..+..+......|+..+...+..+..+..+.+|+.++.+.+++.+.
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~l~~~~~~~~~ 311 (547)
T PRK10522 235 AVNWSNIMMLGAIGLVFYMANSL---GWADTNVAATYSLTLLFLRTPLLSAVGALPTLLSAQVAFNKLNKLALAPYKAEF 311 (547)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh---hcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccc
Confidence 33333222222223333333322 112333333333334445678999999999999999999999998754332211
Q ss_pred CccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 997 SEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 997 ~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
++ ..+.+..+.|+++||+|+||++ .++|+|+||+|+|||++|||||||||||||+++|+|+|+|++|+|++||+|
T Consensus 312 ~~---~~~~~~~~~i~~~~v~f~y~~~--~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~ 386 (547)
T PRK10522 312 PR---PQAFPDWQTLELRNVTFAYQDN--GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKP 386 (547)
T ss_pred cc---ccccCcCceEEEEEEEEEeCCC--CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEE
Confidence 11 1111113579999999999853 369999999999999999999999999999999999999999999999999
Q ss_pred cccCChHHHhcceEEEcCCCCCChhhHHHHH--HHHhhhchHHHhhhhchhhhhcCC---CCCCChhHHHHHHHHHHHcc
Q 040099 1077 IQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--AEMANANGFISGLQEGYDTLVGER---GVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1077 i~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL--~~~a~~~~~i~~lp~Gldt~vge~---G~~LSGGQrQRlaLARALlr 1151 (1236)
+++++.+++|+++++|||||++|++|+++|- .....+.++++.++-+.++..+++ |.+||||||||++||||+++
T Consensus 387 ~~~~~~~~~~~~i~~v~q~~~lf~~ti~~n~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~G~~LSgGq~qRl~lARal~~ 466 (547)
T PRK10522 387 VTAEQPEDYRKLFSAVFTDFHLFDQLLGPEGKPANPALVEKWLERLKMAHKLELEDGRISNLKLSKGQKKRLALLLALAE 466 (547)
T ss_pred CCCCCHHHHhhheEEEecChhHHHHhhccccCchHHHHHHHHHHHcCCchhhhccccCCCCCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999982 123345567777766666555554 78999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe-cChhHHhhc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK-GSHESLIST 1222 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~-Gt~~eLl~~ 1222 (1236)
+|+|||||||||+||+++|+.+.+.+.+.. +++|+|+||||+++++.||+|++|++|+++|. |++.+-..+
T Consensus 467 ~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~e~~~~~~~~~~~ 540 (547)
T PRK10522 467 ERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYFIHADRLLEMRNGQLSELTGEERDAASR 540 (547)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHHHhCCEEEEEECCEEEEecCCchhhhhh
Confidence 999999999999999999999999997654 47999999999999999999999999999988 666665544
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-67 Score=645.80 Aligned_cols=475 Identities=23% Similarity=0.377 Sum_probs=334.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 6 ~l~i~~l~~~y~~--~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~-----------~~~i 72 (556)
T PRK11819 6 IYTMNRVSKVVPP--KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP-----------GIKV 72 (556)
T ss_pred EEEEeeEEEEeCC--CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 4899999999962 25699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC----------------CCH----------HHHHHHHHHh-------ccHHHHHhC
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH----------------ATK----------EEIQAAAEAA-------NASHFIKNL 509 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~----------------~~~----------~~~~~~~~~~-------~~~~~i~~l 509 (1236)
|||+|+|.+++. |++||+.++... ... .++.+.++.+ .+.+.+..+
T Consensus 73 ~~v~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 152 (556)
T PRK11819 73 GYLPQEPQLDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQLEIAMDAL 152 (556)
T ss_pred EEEecCCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHHHHHHHhC
Confidence 999999999875 999999875310 000 0111111111 122333333
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-c
Q 040099 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-A 588 (1236)
Q Consensus 510 ~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-a 588 (1236)
|++ .......+||||||||++|||||+.+|++||||||||+||+.+..++.+.|+++. .|+|+|||+++.+.. |
T Consensus 153 --gl~-~~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~~~~~~~ 227 (556)
T PRK11819 153 --RCP-PWDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRYFLDNVA 227 (556)
T ss_pred --CCC-cccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhc
Confidence 443 2455667899999999999999999999999999999999999999999998873 599999999999976 9
Q ss_pred CeEEEEECCEEE-EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 040099 589 NIIAVIQQGKIV-EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKA 667 (1236)
Q Consensus 589 d~i~vl~~G~i~-~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1236)
|+|++|++|+++ ..|+++++.+.. . .-...+. ...
T Consensus 228 d~i~~l~~g~i~~~~g~~~~~~~~~-~---~~~~~~~--~~~-------------------------------------- 263 (556)
T PRK11819 228 GWILELDRGRGIPWEGNYSSWLEQK-A---KRLAQEE--KQE-------------------------------------- 263 (556)
T ss_pred CeEEEEeCCEEEEecCCHHHHHHHH-H---HHHHHHH--HHH--------------------------------------
Confidence 999999999986 667766554320 0 0000000 000
Q ss_pred CCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 040099 668 KMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSP 747 (1236)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 747 (1236)
+.
T Consensus 264 ------------------------------------------------------~~------------------------ 265 (556)
T PRK11819 264 ------------------------------------------------------AA------------------------ 265 (556)
T ss_pred ------------------------------------------------------HH------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 748 LSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAF 827 (1236)
Q Consensus 748 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~ 827 (1236)
.+..+ .++ ..|.+. .+.+
T Consensus 266 ----------------~~~~~-~~~----~~~~~~--~~~~--------------------------------------- 283 (556)
T PRK11819 266 ----------------RQKAL-KRE----LEWVRQ--SPKA--------------------------------------- 283 (556)
T ss_pred ----------------HHHHH-HHH----HHHHHH--hhhh---------------------------------------
Confidence 00000 000 000000 0000
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHH
Q 040099 828 KACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAG 907 (1236)
Q Consensus 828 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 907 (1236)
+. . .. ....
T Consensus 284 -------------------------~~----~-~~---------------------------~~~~-------------- 292 (556)
T PRK11819 284 -------------------------RQ----A-KS---------------------------KARL-------------- 292 (556)
T ss_pred -------------------------hH----H-HH---------------------------HHHH--------------
Confidence 00 0 00 0000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 908 IRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGL 987 (1236)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 987 (1236)
...++..+
T Consensus 293 -----------------------------------------------------------------------~~~~~~~~- 300 (556)
T PRK11819 293 -----------------------------------------------------------------------ARYEELLS- 300 (556)
T ss_pred -----------------------------------------------------------------------HHHHHhhc-
Confidence 00000000
Q ss_pred HhcccccCC-Ccc-ccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 988 IDQVSKIDS-SEY-TGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 988 ~~~~~~~~~-~~~-~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
..+...+. ... ..........-++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|
T Consensus 301 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p 376 (556)
T PRK11819 301 -EEYQKRNETNEIFIPPGPRLGDKVIEAENLSKSFGDR---LLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQP 376 (556)
T ss_pred -ccccccCCCceeecCCCCCCCCeEEEEEeEEEEECCe---eeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 00000000 000 000000112259999999999743 589999999999999999999999999999999999999
Q ss_pred CCcEEEECCeecccCChHHHhcceEEEcCCC-CCCh-hhHHHHHHHHhh----------hchHHHhhhhchhh-hhcCCC
Q 040099 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEP-VLFS-DTIRANIAEMAN----------ANGFISGLQEGYDT-LVGERG 1132 (1236)
Q Consensus 1066 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF~-gTIreNL~~~a~----------~~~~i~~lp~Gldt-~vge~G 1132 (1236)
++|+|.+++ ++ +|+||||++ .++. .|++||+..... ....+..+ |+.. ......
T Consensus 377 ~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~ 443 (556)
T PRK11819 377 DSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIKVGNREIPSRAYVGRF--NFKGGDQQKKV 443 (556)
T ss_pred CCeEEEECC-ce----------EEEEEeCchhhcCCCCCHHHHHHhhcccccccccHHHHHHHHHhC--CCChhHhcCch
Confidence 999999964 21 599999997 5654 499999852211 11122221 3322 234556
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeC-CEE
Q 040099 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQ-GMI 1210 (1236)
Q Consensus 1133 ~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~-G~I 1210 (1236)
..||||||||++||||++.+|++|||||||++||+.+...+.+.|++. . .|+|+|||+++.+.. ||+|++|++ |++
T Consensus 444 ~~LSgG~~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~-~-~tvi~vtHd~~~~~~~~d~i~~l~~~g~~ 521 (556)
T PRK11819 444 GVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLDVETLRALEEALLEF-P-GCAVVISHDRWFLDRIATHILAFEGDSQV 521 (556)
T ss_pred hhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-C-CeEEEEECCHHHHHHhCCEEEEEECCCeE
Confidence 789999999999999999999999999999999999999999999986 3 499999999999876 999999986 888
Q ss_pred EE-ecChhHHhhc
Q 040099 1211 VE-KGSHESLIST 1222 (1236)
Q Consensus 1211 ve-~Gt~~eLl~~ 1222 (1236)
.+ .|+++++++.
T Consensus 522 ~~~~g~~~~~~~~ 534 (556)
T PRK11819 522 EWFEGNFQEYEED 534 (556)
T ss_pred EEecCCHHHHHHH
Confidence 74 7899888765
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-66 Score=637.93 Aligned_cols=475 Identities=24% Similarity=0.365 Sum_probs=335.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-++++|++++|++ ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++ +.+|
T Consensus 4 ~i~~~nls~~~~~--~~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~-----------~~~i 70 (552)
T TIGR03719 4 IYTMNRVSKVVPP--KKEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP-----------GIKV 70 (552)
T ss_pred EEEEeeEEEecCC--CCeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-----------CCEE
Confidence 3899999999962 24699999999999999999999999999999999999999999999975 2479
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC-----------------C-C--------HHHHHHHHHHhccH-------HHHHhC
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH-----------------A-T--------KEEIQAAAEAANAS-------HFIKNL 509 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~-----------------~-~--------~~~~~~~~~~~~~~-------~~i~~l 509 (1236)
|||+|++.+++. |++|||.++... . . .+++.++++.++.+ +.+..+
T Consensus 71 ~~v~Q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 150 (552)
T TIGR03719 71 GYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEIAMDAL 150 (552)
T ss_pred EEEeccCCCCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHHHHhhC
Confidence 999999998864 999999875310 0 0 11233444444432 233333
Q ss_pred CCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-c
Q 040099 510 PQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-A 588 (1236)
Q Consensus 510 ~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-a 588 (1236)
|++. ......+||||||||++|||||+.+|++|||||||++||+.+..++.+.|+++ ++|+|+|||+++.+.. |
T Consensus 151 --~l~~-~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~--~~tvIiisHd~~~~~~~~ 225 (552)
T TIGR03719 151 --RCPP-WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEY--PGTVVAVTHDRYFLDNVA 225 (552)
T ss_pred --CCCc-ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhc
Confidence 4422 35566789999999999999999999999999999999999999999999876 3699999999999976 9
Q ss_pred CeEEEEECCEEE-EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 040099 589 NIIAVIQQGKIV-EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKA 667 (1236)
Q Consensus 589 d~i~vl~~G~i~-~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 667 (1236)
|+|++|++|+++ ..|+++++++.. ..+. ..... .
T Consensus 226 d~v~~l~~g~i~~~~g~~~~~~~~~--------~~~~-~~~~~--~---------------------------------- 260 (552)
T TIGR03719 226 GWILELDRGRGIPWEGNYSSWLEQK--------EKRL-EQEEK--E---------------------------------- 260 (552)
T ss_pred CeEEEEECCEEEEecCCHHHHHHHH--------HHHH-HHHHH--H----------------------------------
Confidence 999999999975 667766554320 0000 00000 0
Q ss_pred CCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHH
Q 040099 668 KMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSP 747 (1236)
Q Consensus 668 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 747 (1236)
.+.
T Consensus 261 -----------------------------------------------------~~~------------------------ 263 (552)
T TIGR03719 261 -----------------------------------------------------ESA------------------------ 263 (552)
T ss_pred -----------------------------------------------------HHH------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 748 LSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAF 827 (1236)
Q Consensus 748 ~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~ 827 (1236)
....+ .+.
T Consensus 264 ----------------~~~~~-----------------------~~~--------------------------------- 271 (552)
T TIGR03719 264 ----------------RQKAL-----------------------KRE--------------------------------- 271 (552)
T ss_pred ----------------HHHHH-----------------------HHH---------------------------------
Confidence 00000 000
Q ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHH
Q 040099 828 KACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAG 907 (1236)
Q Consensus 828 ~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 907 (1236)
..|. +.... ..+. . ......++
T Consensus 272 -~~~~--------------------~~~~~-~~~~-~------------------------~~~~~~~~----------- 293 (552)
T TIGR03719 272 -LEWV--------------------RSSPK-ARQA-K------------------------SKARLARY----------- 293 (552)
T ss_pred -HHHH--------------------Hhhhh-hHHH-H------------------------HHHHHHHH-----------
Confidence 0000 00000 0000 0 00000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 908 IRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGL 987 (1236)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~ 987 (1236)
++..+
T Consensus 294 --------------------------------------------------------------------------~~~~~- 298 (552)
T TIGR03719 294 --------------------------------------------------------------------------EELLS- 298 (552)
T ss_pred --------------------------------------------------------------------------Hhhhh-
Confidence 00000
Q ss_pred HhcccccCCCccc--cCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 988 IDQVSKIDSSEYT--GRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 988 ~~~~~~~~~~~~~--~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
..++..+..... .........-++++|++++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|
T Consensus 299 -~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~---~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p 374 (552)
T TIGR03719 299 -QEFQKRNETAEIYIPPGPRLGDKVIEAENLSKGFGDK---LLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQP 374 (552)
T ss_pred -hcccccCCCceeecCCCCCCCCeEEEEeeEEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC
Confidence 000000000000 00000011248999999999743 599999999999999999999999999999999999999
Q ss_pred CCcEEEECCeecccCChHHHhcceEEEcCCCC-CCh-hhHHHHHHHHhh----------hchHHHhhhhchhh-hhcCCC
Q 040099 1066 SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV-LFS-DTIRANIAEMAN----------ANGFISGLQEGYDT-LVGERG 1132 (1236)
Q Consensus 1066 ~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~-LF~-gTIreNL~~~a~----------~~~~i~~lp~Gldt-~vge~G 1132 (1236)
++|+|.+++ ++ +|+|+||++. ++. .|++||+..... ..+.+..+ |++. ......
T Consensus 375 ~~G~i~~~~-~~----------~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~ 441 (552)
T TIGR03719 375 DSGTIKIGE-TV----------KLAYVDQSRDALDPNKTVWEEISGGLDIIQLGKREVPSRAYVGRF--NFKGSDQQKKV 441 (552)
T ss_pred CCeEEEECC-ce----------EEEEEeCCccccCCCCcHHHHHHhhccccccCcchHHHHHHHHhC--CCChhHhcCch
Confidence 999999964 21 6999999973 554 599999853211 11222222 3432 234566
Q ss_pred CCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeC-CEE
Q 040099 1133 VQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQ-GMI 1210 (1236)
Q Consensus 1133 ~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~-G~I 1210 (1236)
..||||||||++|||||+.+|++|||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|++ |++
T Consensus 442 ~~LSgGe~qrv~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~~viivsHd~~~~~~~~d~i~~l~~~~~~ 519 (552)
T TIGR03719 442 GQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLDVETLRALEEALLEF--AGCAVVISHDRWFLDRIATHILAFEGDSHV 519 (552)
T ss_pred hhCCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHC--CCeEEEEeCCHHHHHHhCCEEEEEECCCeE
Confidence 789999999999999999999999999999999999999999999986 3599999999999976 999999997 687
Q ss_pred E-EecChhHHhhc
Q 040099 1211 V-EKGSHESLIST 1222 (1236)
Q Consensus 1211 v-e~Gt~~eLl~~ 1222 (1236)
+ ..|+++++.+.
T Consensus 520 ~~~~g~~~~~~~~ 532 (552)
T TIGR03719 520 EWFEGNYSEYEED 532 (552)
T ss_pred EEeCCCHHHHHHH
Confidence 6 45888877653
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-65 Score=633.29 Aligned_cols=194 Identities=28% Similarity=0.474 Sum_probs=162.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+++. .++
T Consensus 312 ~l~~~~l~~~y~~---~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~~-----------~~i 377 (638)
T PRK10636 312 LLKMEKVSAGYGD---RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAKG-----------IKL 377 (638)
T ss_pred eEEEEeeEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCC-----------EEE
Confidence 4899999999974 35899999999999999999999999999999999999999999999741 269
Q ss_pred EEEcCCC--CCCh-hhHHHHHHHH------hhhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1090 GVVSQEP--VLFS-DTIRANIAEM------ANANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~-gTIreNL~~~------a~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
+|++|++ .++. .|+.+++... ..+.+++..+ |+. ..+......||||||||++||||++.+|++||||
T Consensus 378 gy~~Q~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--~l~~~~~~~~~~~LSgGekqRl~La~~l~~~p~lLlLD 455 (638)
T PRK10636 378 GYFAQHQLEFLRADESPLQHLARLAPQELEQKLRDYLGGF--GFQGDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLD 455 (638)
T ss_pred EEecCcchhhCCccchHHHHHHHhCchhhHHHHHHHHHHc--CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 9999985 3443 4788876421 1122333332 332 2344566789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHhh
Q 040099 1160 EATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIV-EKGSHESLIS 1221 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv-e~Gt~~eLl~ 1221 (1236)
|||++||+.+...+.+.|+++ ++|||+|||+++.+.. ||+|++|++|+++ ..|++++..+
T Consensus 456 EPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~~~g~~~~~~~ 517 (638)
T PRK10636 456 EPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEPFDGDLEDYQQ 517 (638)
T ss_pred CCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEEcCCCHHHHHH
Confidence 999999999999999999986 4599999999999975 9999999999997 6799998843
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-63 Score=659.51 Aligned_cols=205 Identities=24% Similarity=0.385 Sum_probs=171.4
Q ss_pred cEEEeEEEEECCCC----------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeec
Q 040099 1010 EVQFLRVSFKYPTR----------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEI 1077 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~----------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di 1077 (1236)
.+.|+||++.++.. ....+|+|||++|+|||.+||+||||||||||+++|.|..++ .+|+|.+||.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 68999999998532 123699999999999999999999999999999999999773 689999999886
Q ss_pred ccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhh---------------hchHHH--hhhhchhhhhcCCC-CCCChh
Q 040099 1078 QKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMAN---------------ANGFIS--GLQEGYDTLVGERG-VQLSGG 1138 (1236)
Q Consensus 1078 ~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~---------------~~~~i~--~lp~Gldt~vge~G-~~LSGG 1138 (1236)
+ ...+|+.+|||+|++.++. .|++|||.-.+. +.+.++ .|.+-.|+.+|..+ ..||||
T Consensus 947 ~---~~~~~~~igyv~Q~d~~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~~~~~vg~~~~~~LSgG 1023 (1470)
T PLN03140 947 K---QETFARISGYCEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNLKDAIVGLPGVTGLSTE 1023 (1470)
T ss_pred C---hHHhhhheEEEccccccCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhHhCCccCCCCCCCcCHH
Confidence 4 3457788999999987775 599999952221 112222 23344577787554 679999
Q ss_pred HHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh-h-hhcCEEEEEeC-CEEEEec
Q 040099 1139 QKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLST-I-KNAHLIAVVSQ-GMIVEKG 1214 (1236)
Q Consensus 1139 QrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~t-i-~~aD~I~Vl~~-G~Ive~G 1214 (1236)
||||++|||||+.+|+||+||||||+||+.+...+.+.|++.. +|+|+|+++|+++. + ..||++++|++ |++++.|
T Consensus 1024 erkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG~~v~~G 1103 (1470)
T PLN03140 1024 QRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGGQVIYSG 1103 (1470)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCCEEEEEC
Confidence 9999999999999999999999999999999999999999875 47899999999984 4 66999999996 8999999
Q ss_pred Chh
Q 040099 1215 SHE 1217 (1236)
Q Consensus 1215 t~~ 1217 (1236)
++.
T Consensus 1104 ~~~ 1106 (1470)
T PLN03140 1104 PLG 1106 (1470)
T ss_pred Ccc
Confidence 864
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-63 Score=621.54 Aligned_cols=194 Identities=25% Similarity=0.429 Sum_probs=161.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+ |.++ +|
T Consensus 319 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~~----------~i 384 (635)
T PRK11147 319 VFEMENVNYQIDGK---QLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTKL----------EV 384 (635)
T ss_pred eEEEeeeEEEECCe---EEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCCc----------EE
Confidence 48999999999743 5899999999999999999999999999999999999999999999 4332 59
Q ss_pred EEEcCCC-CCChh-hHHHHHHHHhh----------hchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEP-VLFSD-TIRANIAEMAN----------ANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp-~LF~g-TIreNL~~~a~----------~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|++|++ .++.. |+.||+..... +.+++..+ |+. .........||||||||++|||||+.+|++|
T Consensus 385 ~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGekqRl~la~al~~~p~lL 462 (635)
T PRK11147 385 AYFDQHRAELDPEKTVMDNLAEGKQEVMVNGRPRHVLGYLQDF--LFHPKRAMTPVKALSGGERNRLLLARLFLKPSNLL 462 (635)
T ss_pred EEEeCcccccCCCCCHHHHHHhhcccccccchHHHHHHHHHhc--CCCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999986 46554 99999863211 11112111 222 1234455689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEe-CCEEEEe-cChhHHhh
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVS-QGMIVEK-GSHESLIS 1221 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~-~G~Ive~-Gt~~eLl~ 1221 (1236)
||||||++||+.+...+.+.|++. ++|+|+|||+++.+.. ||+|++|+ +|+|.++ |++++.+.
T Consensus 463 lLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~~g~y~~y~~ 528 (635)
T PRK11147 463 ILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRYVGGYHDARQ 528 (635)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEccCCHHHHHH
Confidence 999999999999999999999876 5699999999999965 99999998 8999874 78888754
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-63 Score=616.08 Aligned_cols=193 Identities=32% Similarity=0.441 Sum_probs=158.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+.+|++|+|.+++ +.+|
T Consensus 508 ~L~~~~ls~~y~~~--~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-----------~~~i 574 (718)
T PLN03073 508 IISFSDASFGYPGG--PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-----------KVRM 574 (718)
T ss_pred eEEEEeeEEEeCCC--CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC-----------ceeE
Confidence 58999999999643 2589999999999999999999999999999999999999999999875 3479
Q ss_pred EEEcCCCCCChhhHHHHHHH-Hh---------hhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSDTIRANIAE-MA---------NANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~-~a---------~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+|+||++. ...++.+|... .. .+..++..+ |+.. ........||||||||++||||++.+|++|||
T Consensus 575 gyv~Q~~~-~~l~~~~~~~~~~~~~~~~~~~~~i~~~L~~~--gl~~~~~~~~~~~LSgGqkqRvaLAraL~~~p~lLLL 651 (718)
T PLN03073 575 AVFSQHHV-DGLDLSSNPLLYMMRCFPGVPEQKLRAHLGSF--GVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLL 651 (718)
T ss_pred EEEecccc-ccCCcchhHHHHHHHhcCCCCHHHHHHHHHHC--CCChHHhcCCccccCHHHHHHHHHHHHHhcCCCEEEE
Confidence 99999973 22345555321 11 111122221 3432 34556788999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEE-EecChhHHh
Q 040099 1159 DEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIV-EKGSHESLI 1220 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv-e~Gt~~eLl 1220 (1236)
||||++||+.+...+.+.|.+. ++|+|+|||+++.+.. ||+|++|++|+++ ..|++++..
T Consensus 652 DEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~~~g~~~~~~ 713 (718)
T PLN03073 652 DEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTPFHGTFHDYK 713 (718)
T ss_pred cCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCCHHHHH
Confidence 9999999999999999999875 3599999999999976 9999999999998 578887764
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-62 Score=564.20 Aligned_cols=441 Identities=27% Similarity=0.419 Sum_probs=342.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH-HHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK-WIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~-~~r~~ 462 (1236)
-++++|++++|+ ..++|+||||++.+||++|++|.||||||||+|.|+|.|+|++|+|.+||++..-.++. .....
T Consensus 8 ll~~~~i~K~Fg---gV~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp~~A~~~G 84 (500)
T COG1129 8 LLELRGISKSFG---GVKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSPRDALAAG 84 (500)
T ss_pred eeeeecceEEcC---CceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCHHHHHhCC
Confidence 488999999997 35799999999999999999999999999999999999999999999999999876665 45667
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCC------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHA------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
|+.|+||..|++. ||.|||.+|++.. +..++.+.++ +.+.++ |.+........+||+||||.|+||
T Consensus 85 I~~V~QEl~L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~-----~~l~~l--g~~~~~~~~v~~LsiaqrQ~VeIA 157 (500)
T COG1129 85 IATVHQELSLVPNLSVAENIFLGREPTRRFGLIDRKAMRRRAR-----ELLARL--GLDIDPDTLVGDLSIAQRQMVEIA 157 (500)
T ss_pred cEEEeechhccCCccHHHHhhcccccccCCCccCHHHHHHHHH-----HHHHHc--CCCCChhhhhhhCCHHHHHHHHHH
Confidence 9999999999875 9999999997643 2344443333 233333 221113344457999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCc-ccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH-SELLENP 612 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~-~~l~~~~ 612 (1236)
||+..+++|||||||||+|+....+.+++.+++++ +|.++|+||||++.+.. ||||.||.||+.+..++. .++-..
T Consensus 158 rAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~~~~~~~~~- 236 (500)
T COG1129 158 RALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRPTAAETSED- 236 (500)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecccccCCCHH-
Confidence 99999999999999999999999999999999996 58999999999999865 999999999999875541 111000
Q ss_pred cchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHH
Q 040099 613 YGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLG 692 (1236)
Q Consensus 613 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 692 (1236)
+
T Consensus 237 -----~-------------------------------------------------------------------------- 237 (500)
T COG1129 237 -----E-------------------------------------------------------------------------- 237 (500)
T ss_pred -----H--------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 693 AIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKV 772 (1236)
Q Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~l 772 (1236)
++..+
T Consensus 238 --------------------lv~~M------------------------------------------------------- 242 (500)
T COG1129 238 --------------------LVRLM------------------------------------------------------- 242 (500)
T ss_pred --------------------HHHHh-------------------------------------------------------
Confidence 00000
Q ss_pred hcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 773 VYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQM 852 (1236)
Q Consensus 773 l~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~ 852 (1236)
.|+
T Consensus 243 --------------vGr--------------------------------------------------------------- 245 (500)
T COG1129 243 --------------VGR--------------------------------------------------------------- 245 (500)
T ss_pred --------------hCc---------------------------------------------------------------
Confidence 000
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 853 KSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVT 932 (1236)
Q Consensus 853 ~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 932 (1236)
T Consensus 246 -------------------------------------------------------------------------------- 245 (500)
T COG1129 246 -------------------------------------------------------------------------------- 245 (500)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEE
Q 040099 933 FYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQ 1012 (1236)
Q Consensus 933 ~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~ 1012 (1236)
++-+..+. . ... ....--++
T Consensus 246 -----------------------------------------------------~~~~~~~~-~-~~~-----~~~~~~l~ 265 (500)
T COG1129 246 -----------------------------------------------------ELEDLFPE-P-PEE-----GIGEPVLE 265 (500)
T ss_pred -----------------------------------------------------chhhhccc-c-ccc-----CCCCcEEE
Confidence 00000000 0 000 00011355
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC-hHHHhcceEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-VKWLRQQMGV 1091 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-~~~lR~~i~~ 1091 (1236)
++|++.. ..++|+||++++||.+||.|-=|||+|-++.+|+|..++.+|+|++||.++.--+ .+..+..|+|
T Consensus 266 v~~l~~~-------~~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~sp~~Ai~~Gi~~ 338 (500)
T COG1129 266 VRNLSGG-------GKVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRSPRDAIKAGIAY 338 (500)
T ss_pred EecCCCC-------CceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCCHHHHHHcCCEe
Confidence 6666542 1489999999999999999999999999999999999899999999999887554 5688999999
Q ss_pred EcCCCC----CChhhHHHHHH-----------------HHhhhchHHHhhhh---chhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1092 VSQEPV----LFSDTIRANIA-----------------EMANANGFISGLQE---GYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1092 V~Qdp~----LF~gTIreNL~-----------------~~a~~~~~i~~lp~---Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
||-|.- +...+|++|+. +...+.+++..|.- +.+ ..-.+||||.+|+++|||
T Consensus 339 v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~----~~v~~LSGGNQQKVvlar 414 (500)
T COG1129 339 VPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPE----QPIGTLSGGNQQKVVLAR 414 (500)
T ss_pred CCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCcc----chhhcCCchhhhhHHHHH
Confidence 999863 44669999984 11122223333321 122 334579999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChh
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
+|..+|+||||||||.++|..+...|.+.|+++. +|.++|+||-.+..+. .||||+||.+|+|+..=+.+
T Consensus 415 wL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~~~~ 486 (500)
T COG1129 415 WLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGELDRE 486 (500)
T ss_pred HHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEeccc
Confidence 9999999999999999999999999999999876 5799999999999987 59999999999998754433
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-62 Score=603.97 Aligned_cols=431 Identities=22% Similarity=0.334 Sum_probs=316.0
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE-----------ECCeecCCCCH
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL-----------IDGVNLKEFQL 456 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~-----------~~g~~~~~~~~ 456 (1236)
++++++|+. +..+|++++ ++++||++||+||||||||||+++|+|+++|++|+|. ++|.++.++..
T Consensus 77 ~~~~~~yg~--~~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~~~~~~~~G~~l~~~~~ 153 (590)
T PRK13409 77 EEPVHRYGV--NGFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWDEVLKRFRGTELQNYFK 153 (590)
T ss_pred cCceEEecC--CceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHHHHHHHhCChHHHHHHH
Confidence 348899963 346999999 9999999999999999999999999999999999997 89988865432
Q ss_pred H--HHhcceE----EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 457 K--WIREKIG----LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 457 ~--~~r~~i~----~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
+ ..+.+++ |++|.|.+|.+|++||+.... ..+++.++++..++ +........+|||||||
T Consensus 154 ~~~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~~---~~~~~~~~l~~l~l-----------~~~~~~~~~~LSgGe~q 219 (590)
T PRK13409 154 KLYNGEIKVVHKPQYVDLIPKVFKGKVRELLKKVD---ERGKLDEVVERLGL-----------ENILDRDISELSGGELQ 219 (590)
T ss_pred HHhccCcceeecccchhhhhhhhcchHHHHHHhhh---HHHHHHHHHHHcCC-----------chhhcCChhhCCHHHHH
Confidence 1 1122344 555566778889999997421 22344555544443 33344555689999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|++|||||+++|++||||||||+||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|. |
T Consensus 220 rv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~vl~~~~----g------ 289 (590)
T PRK13409 220 RVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVHIAYGEP----G------ 289 (590)
T ss_pred HHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCc----c------
Confidence 999999999999999999999999999999999999998668899999999999876 99999997631 1
Q ss_pred ccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHH
Q 040099 610 ENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPAL 689 (1236)
Q Consensus 610 ~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 689 (1236)
.|.... .... .
T Consensus 290 -----~~g~~~-~~~~-------------------------------------------------~-------------- 300 (590)
T PRK13409 290 -----AYGVVS-KPKG-------------------------------------------------V-------------- 300 (590)
T ss_pred -----ccceec-chhH-------------------------------------------------H--------------
Confidence 110000 0000 0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 690 LLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCF 769 (1236)
Q Consensus 690 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~ 769 (1236)
... ...|. ..
T Consensus 301 -------------------------------~~~----i~~~~----------------~~------------------- 310 (590)
T PRK13409 301 -------------------------------RVG----INEYL----------------KG------------------- 310 (590)
T ss_pred -------------------------------HHh----HHHHH----------------Hh-------------------
Confidence 000 00000 00
Q ss_pred HHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Q 040099 770 EKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGH 849 (1236)
Q Consensus 770 ~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~ 849 (1236)
+ .
T Consensus 311 ---------~-~-------------------------------------------------------------------- 312 (590)
T PRK13409 311 ---------Y-L-------------------------------------------------------------------- 312 (590)
T ss_pred ---------c-c--------------------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 850 IQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAY 929 (1236)
Q Consensus 850 ~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 929 (1236)
. . | ++ + +. ..
T Consensus 313 ------~--~---------------e---~~---~-----------~~---~~--------------------------- 322 (590)
T PRK13409 313 ------P--E---------------E---NM---R-----------IR---PE--------------------------- 322 (590)
T ss_pred ------h--h---------------h---hh---h-----------cc---cc---------------------------
Confidence 0 0 0 00 0 00 00
Q ss_pred HHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccc
Q 040099 930 AVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMG 1009 (1236)
Q Consensus 930 ~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g 1009 (1236)
.++ + ...+. .... ...-
T Consensus 323 --------------~~~--------------------------------------~---~~~~~--~~~~------~~~~ 339 (590)
T PRK13409 323 --------------PIE--------------------------------------F---EERPP--RDES------ERET 339 (590)
T ss_pred --------------Ccc--------------------------------------e---ecCCC--cccc------CCce
Confidence 000 0 00000 0000 0011
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++|++++|++. .|+++||+|++||++||+||||||||||+++|.|+.+|++|+|.++ .++
T Consensus 340 ~l~~~~ls~~~~~~----~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------~~i 402 (590)
T PRK13409 340 LVEYPDLTKKLGDF----SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------LKI 402 (590)
T ss_pred EEEEcceEEEECCE----EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe-------------eeE
Confidence 48999999999642 4999999999999999999999999999999999999999999986 159
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHhh-------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMAN-------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a~-------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
+|+||++.+ ++.|++||+..... ..+.+..+ |++.........||||||||++|||||+++|+|||||||
T Consensus 403 ~y~~Q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~L~~l--~l~~~~~~~~~~LSGGe~QRvaiAraL~~~p~llLLDEP 480 (590)
T PRK13409 403 SYKPQYIKPDYDGTVEDLLRSITDDLGSSYYKSEIIKPL--QLERLLDKNVKDLSGGELQRVAIAACLSRDADLYLLDEP 480 (590)
T ss_pred EEecccccCCCCCcHHHHHHHHhhhcChHHHHHHHHHHC--CCHHHHhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeCC
Confidence 999999865 46799999863211 11222222 455455667788999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecC
Q 040099 1162 TSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt 1215 (1236)
|++||+++...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++ ++...|+
T Consensus 481 t~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~~-~~~~~g~ 536 (590)
T PRK13409 481 SAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFEG-EPGKHGH 536 (590)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcC-cceeeee
Confidence 999999999999999998753 7899999999999865 999999964 8877765
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-59 Score=583.83 Aligned_cols=513 Identities=16% Similarity=0.141 Sum_probs=419.5
Q ss_pred hHHHhhhcCCchH-----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh-HHhhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVP-----ALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKE-ELMRHSKHWALMFVALGAASLLTSPL 748 (1236)
Q Consensus 675 ~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~ 748 (1236)
+++++.+..|+++ .+++.+++.++...+....+++.+.+++....... ........|.++++++.++..+..++
T Consensus 79 ~~~l~~~~~p~~~~~~~~~l~~~~~~~~~~t~~~l~~~~l~~~iid~l~~~~~~~f~~~l~~~~l~~~~~~~~~~~~~~~ 158 (659)
T TIGR00954 79 LDFLLKILIPRVFCKETGLLILIAFLLVSRTYLSVYVATLDGQIESSIVRRSPRNFAWILFKWFLIAPPASFINSAIKYL 158 (659)
T ss_pred HHHHHHHHcCcccchHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456667777765 46666666777777788888888888887643321 11112233444455556666677777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 749 SMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFK 828 (1236)
Q Consensus 749 ~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~ 828 (1236)
..++......++.+++|.+.+++....++++||. ++|++.+|+++|++.+.+.+...+..++..++.+++.++.++.
T Consensus 159 ~~~~~~~~r~~l~~~l~~~~~~~~~~~~~~~~d~---~~g~~~srlt~Dv~~i~~~~~~~~~~l~~~~~~ii~~~~~L~~ 235 (659)
T TIGR00954 159 LKELKLRFRVRLTRYLYSKYLSGFTFYKVSNLDS---RIQNPDQLLTQDVEKFCDSVVELYSNLTKPILDVILYSFKLLT 235 (659)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCCceEEeccCCC---CCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7778888889999999999999999999999983 6899999999999999999999999999999998888887775
Q ss_pred -HhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHH
Q 040099 829 -ACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAG 907 (1236)
Q Consensus 829 -~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~ 907 (1236)
.+|.+++++++.+|+..++..++.++..+...+.++..++....+.|.++|+++|++|+.++.+.+++.+..++..+..
T Consensus 236 ~~~~~l~l~~l~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~g~~~I~~~~~e~~e~~~~~~~~~~l~~~~ 315 (659)
T TIGR00954 236 ALGSVGPAGLFAYLFATGVVLTKLRPPIGKLTVEEQALEGEYRYVHSRLIMNSEEIAFYQGNKVEKETVMSSFYRLVEHL 315 (659)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHh-h----cCCCHHHHHHH-HHH---HHHHHHHHHHHHHHHHHHHH
Q 040099 908 IRQGLMSGIGFGLSFFFFFM--AYAVTFYVGAKLVD-H----KQATFTEVFRV-FFA---LSMTAIGISQTSSLASDASK 976 (1236)
Q Consensus 908 ~~~~~~~~~~~~~~~~~~~~--~~~~~~~~g~~lv~-~----~~~~~~~l~~~-~~~---~~~~~~~~~~~~~~~~~~~~ 976 (1236)
.+...+......+..++... ..+..++.|...+. . |.+|.|.+++. ..+ ......++..+.....++++
T Consensus 316 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~g~~~~~~~~~~~g~~t~g~~~~~f~~~~~~~~~l~~~~~~l~~~~~~i~~ 395 (659)
T TIGR00954 316 NLIIKFRFSYGFLDNIVAKYTWSAVGLVAVSIPIFDKTHPAFLEMSEEELMQEFYNNGRLLLKAADALGRLMLAGRDMTR 395 (659)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888877777776542 33333344443332 2 68898887663 332 45567889999999999999
Q ss_pred HHHHHHHHHHHHhcccccCCC------ccc--c--------------CccCCccccEEEeEEEEECCCCCCcccccceeE
Q 040099 977 AKSSAASVFGLIDQVSKIDSS------EYT--G--------------RTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCL 1034 (1236)
Q Consensus 977 ~~~a~~ri~~~~~~~~~~~~~------~~~--~--------------~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~ 1034 (1236)
+..+++|++++++.+++.... ... + ...+...+.|+++||+|+||+. .++|+|+||
T Consensus 396 ~~~~~~Ri~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nv~~~~~~~--~~il~~isl 473 (659)
T TIGR00954 396 LAGFTARVDTLLQVLDDVKSGNFKRPRVEEIESGREGGRNSNLVPGRGIVEYQDNGIKFENIPLVTPNG--DVLIESLSF 473 (659)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccccccccccccccccccccccccccccCCCeEEEEeeEEECCCC--CeeeecceE
Confidence 999999999999865432100 000 0 0011133579999999999743 359999999
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH------
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA------ 1108 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~------ 1108 (1236)
+|++||++||+||||||||||+++|.|+|+|++|+|.+|+ |+++++|||+|.+|++|++|||.
T Consensus 474 ~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-----------~~~i~~v~Q~~~l~~~tv~eni~~~~~~~ 542 (659)
T TIGR00954 474 EVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-----------KGKLFYVPQRPYMTLGTLRDQIIYPDSSE 542 (659)
T ss_pred EECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC-----------CCcEEEECCCCCCCCcCHHHHHhcCCChh
Confidence 9999999999999999999999999999999999999874 67899999999999999999984
Q ss_pred ----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1109 ----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1109 ----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
+.+++++++.. |.|+||..+ .+.+||||||||++||||++++|++||||||||+||+++++.
T Consensus 543 ~~~~~~~~~~~i~~~l~~~~l~~~~~~-~~g~~~~~~-~~~~LSgGqkQRl~iARal~~~p~illLDEpts~LD~~~~~~ 620 (659)
T TIGR00954 543 DMKRRGLSDKDLEQILDNVQLTHILER-EGGWSAVQD-WMDVLSGGEKQRIAMARLFYHKPQFAILDECTSAVSVDVEGY 620 (659)
T ss_pred hhhccCCCHHHHHHHHHHcCCHHHHhh-cCCcccccc-cccCCCHHHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHH
Confidence 22344455555 789999876 567999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeC
Q 040099 1173 VQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQ 1207 (1236)
Q Consensus 1173 I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~ 1207 (1236)
+.+.+++. ++|+|+||||+++++.||+|++|+.
T Consensus 621 l~~~l~~~--~~tvI~isH~~~~~~~~d~il~l~~ 653 (659)
T TIGR00954 621 MYRLCREF--GITLFSVSHRKSLWKYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHc--CCEEEEEeCchHHHHhCCEEEEEeC
Confidence 99999874 8999999999999999999999973
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-60 Score=566.39 Aligned_cols=478 Identities=28% Similarity=0.393 Sum_probs=333.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|.++|++++|+ ++++|+|+||++.+|+++||||+||||||||+++|+|...|++|+|...+. -++
T Consensus 3 ~i~~~~ls~~~g---~~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~~-----------~~v 68 (530)
T COG0488 3 MITLENLSLAYG---DRPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPKG-----------LRV 68 (530)
T ss_pred eEEEeeeEEeeC---CceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecCC-----------ceE
Confidence 488999999995 357999999999999999999999999999999999999999999998752 269
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCCC--HHHHHHHHH------------------H-------hccHHHHHhCCCCccc
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHAT--KEEIQAAAE------------------A-------ANASHFIKNLPQGLDT 515 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~~~~~~~~------------------~-------~~~~~~i~~l~~g~~t 515 (1236)
+|++|++.+.+. ||.|.+..+..... ..+++++.. . +.+...+..| |+..
T Consensus 69 ~~l~Q~~~~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gL--g~~~ 146 (530)
T COG0488 69 GYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGL--GFPD 146 (530)
T ss_pred EEeCCCCCcCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcC--CCCc
Confidence 999999999865 99999988754211 011111110 0 1122223333 3333
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEE
Q 040099 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVI 594 (1236)
Q Consensus 516 ~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl 594 (1236)
. .....+||||||.|++|||||+.+|++|||||||++||.++..++.+.|.+.. | |+|+|||+..++.. |++|+.+
T Consensus 147 ~-~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~I~~l 223 (530)
T COG0488 147 E-DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATHILEL 223 (530)
T ss_pred c-cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhheEEe
Confidence 3 44556899999999999999999999999999999999999999999998763 5 99999999999987 9999999
Q ss_pred ECCEEE-EEeCcccccccccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcc
Q 040099 595 QQGKIV-EKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDV 673 (1236)
Q Consensus 595 ~~G~i~-~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 673 (1236)
++|++. ..|++ ..+++........+....
T Consensus 224 d~g~l~~y~Gny-----------~~~~~~r~~~~~~~~~~~--------------------------------------- 253 (530)
T COG0488 224 DRGKLTPYKGNY-----------SSYLEQKAERLRQEAAAY--------------------------------------- 253 (530)
T ss_pred cCCceeEecCCH-----------HHHHHHHHHHHHHHHHHH---------------------------------------
Confidence 999874 34444 333322111000000000
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
..
T Consensus 254 ------------------------------------------------~~------------------------------ 255 (530)
T COG0488 254 ------------------------------------------------EK------------------------------ 255 (530)
T ss_pred ------------------------------------------------HH------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
+.+..++ .
T Consensus 256 -----------~~~~~~~-----------------------------~-------------------------------- 263 (530)
T COG0488 256 -----------QQKELAK-----------------------------E-------------------------------- 263 (530)
T ss_pred -----------HHHHHHH-----------------------------H--------------------------------
Confidence 0000000 0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
..+.+++...-....++
T Consensus 264 --------------------------------------------------------~~~i~r~~~~~~~~k~a------- 280 (530)
T COG0488 264 --------------------------------------------------------QEWIRRGKAAASKAKKA------- 280 (530)
T ss_pred --------------------------------------------------------HHHHHHHHhccchHHHH-------
Confidence 00000000000000000
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
......++++.+......+
T Consensus 281 -------------------------------------------------------------~sr~k~l~k~~~~~~~~~~ 299 (530)
T COG0488 281 -------------------------------------------------------------KSRIKRLEKLEARLAEERP 299 (530)
T ss_pred -------------------------------------------------------------HHHHHHHHHHHhhhhhccc
Confidence 0000001111100000000
Q ss_pred cCCCccc--cCccC---CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 040099 994 IDSSEYT--GRTLE---NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068 (1236)
Q Consensus 994 ~~~~~~~--~~~~~---~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G 1068 (1236)
....... ..+++ ...--++++|++++|+.. .++++++||.|.+|++||||||||+|||||+++|.|-..|.+|
T Consensus 300 ~~~~~~~~~~f~~~~~~~g~~vl~~~~~~~~y~~~--~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G 377 (530)
T COG0488 300 VEEGKPLAFRFPPPGKRLGKLVLEFENVSKGYDGG--RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSG 377 (530)
T ss_pred ccccccceeeccCCcccCCCeeEEEeccccccCCC--ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCc
Confidence 0000000 00011 112358999999999753 4689999999999999999999999999999999999999999
Q ss_pred EEEECCeecccCChHHHhcceEEEcCCC-CCC-hhhHHHHHHHHh------hhchHHHhhhhchh-hhhcCCCCCCChhH
Q 040099 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEP-VLF-SDTIRANIAEMA------NANGFISGLQEGYD-TLVGERGVQLSGGQ 1139 (1236)
Q Consensus 1069 ~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF-~gTIreNL~~~a------~~~~~i~~lp~Gld-t~vge~G~~LSGGQ 1139 (1236)
+|.++-. -++||.+|+. .++ +.|+-|++.+.. .+..+..++ |+. ..+......|||||
T Consensus 378 ~v~~g~~-----------v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~~e~~~r~~L~~f--~F~~~~~~~~v~~LSGGE 444 (530)
T COG0488 378 TVKVGET-----------VKIGYFDQHRDELDPDKTVLEELSEGFPDGDEQEVRAYLGRF--GFTGEDQEKPVGVLSGGE 444 (530)
T ss_pred eEEeCCc-----------eEEEEEEehhhhcCccCcHHHHHHhhCccccHHHHHHHHHHc--CCChHHHhCchhhcCHhH
Confidence 9998731 2589999998 444 348999886443 112222221 111 11234456799999
Q ss_pred HHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEe-cChh
Q 040099 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEK-GSHE 1217 (1236)
Q Consensus 1140 rQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~-Gt~~ 1217 (1236)
|-|+.||+.++.+|.+|||||||++||.+|...+.++|.++ ..|||+|||+.+.+.. |++|+++++ ++.++ |+++
T Consensus 445 k~Rl~La~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f--~Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~~~~g~y~ 521 (530)
T COG0488 445 KARLLLAKLLLQPPNLLLLDEPTNHLDIESLEALEEALLDF--EGTVLLVSHDRYFLDRVATRIWLVED-KVEEFEGGYE 521 (530)
T ss_pred HHHHHHHHHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHhhcceEEEEcC-ceeEcCCCHH
Confidence 99999999999999999999999999999999999999986 6799999999999987 999999999 88887 8999
Q ss_pred HHhhc
Q 040099 1218 SLIST 1222 (1236)
Q Consensus 1218 eLl~~ 1222 (1236)
+..+.
T Consensus 522 ~y~~~ 526 (530)
T COG0488 522 DYLEQ 526 (530)
T ss_pred HHHHh
Confidence 98775
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-59 Score=527.45 Aligned_cols=451 Identities=24% Similarity=0.432 Sum_probs=351.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC-HHHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-LKWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~ 462 (1236)
.++++++++.|| +..+++||||+|++||+.||.|+||+|||||+++|.|+|+|++|+|++||++++--+ .+..|..
T Consensus 4 ~l~~~~itK~f~---~~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~sP~dA~~~G 80 (501)
T COG3845 4 ALEMRGITKRFP---GVVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKSPRDAIRLG 80 (501)
T ss_pred eEEEeccEEEcC---CEEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCCHHHHHHcC
Confidence 589999999997 357999999999999999999999999999999999999999999999999998554 4668889
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
||+|.|++.|++. ||.|||.+|.+.. +..+..+ .+.+..+++ |++-...+....||-||||||.|-+
T Consensus 81 IGMVhQHF~Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~-----~i~~l~~~y--Gl~vdp~~~V~dLsVG~qQRVEIlK 153 (501)
T COG3845 81 IGMVHQHFMLVPTLTVAENIILGLEPSKGGLIDRRQARA-----RIKELSERY--GLPVDPDAKVADLSVGEQQRVEILK 153 (501)
T ss_pred CcEEeeccccccccchhhhhhhcCccccccccCHHHHHH-----HHHHHHHHh--CCCCCccceeecCCcchhHHHHHHH
Confidence 9999999999976 9999999998642 2222211 122333333 5655566667789999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYG 614 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~ 614 (1236)
|||++|++||||||||-|-|.....+++.++++. .|+|+|+|||++..+.. |||+-||.+|+++..-+ ..-+..
T Consensus 154 aLyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~~--~~~~~t-- 229 (501)
T COG3845 154 ALYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTVD--PVAETT-- 229 (501)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeeec--CCCCCC--
Confidence 9999999999999999999999999999999986 58999999999999976 99999999999864321 100000
Q ss_pred hhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHH
Q 040099 615 AYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAI 694 (1236)
Q Consensus 615 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1236)
. + .+.++
T Consensus 230 -----------------------------------------------~----~------ela~l---------------- 236 (501)
T COG3845 230 -----------------------------------------------E----E------ELAEL---------------- 236 (501)
T ss_pred -----------------------------------------------H----H------HHHHH----------------
Confidence 0 0 00000
Q ss_pred HHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 695 ASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVY 774 (1236)
Q Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~ 774 (1236)
+ .
T Consensus 237 -------------------M---v-------------------------------------------------------- 238 (501)
T COG3845 237 -------------------M---V-------------------------------------------------------- 238 (501)
T ss_pred -------------------h---c--------------------------------------------------------
Confidence 0 0
Q ss_pred CCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 775 MEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKS 854 (1236)
Q Consensus 775 ~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~ 854 (1236)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 855 MKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFY 934 (1236)
Q Consensus 855 ~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1236)
T Consensus 239 -------------------------------------------------------------------------------- 238 (501)
T COG3845 239 -------------------------------------------------------------------------------- 238 (501)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEe
Q 040099 935 VGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFL 1014 (1236)
Q Consensus 935 ~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~ 1014 (1236)
| .++. ...+ .... .+-.--++++
T Consensus 239 -G------~~v~-------------------------------------------~~~~-~~~~------~pg~~vL~V~ 261 (501)
T COG3845 239 -G------REVV-------------------------------------------LRVV-KPPS------TPGEVVLEVE 261 (501)
T ss_pred -C------Cccc-------------------------------------------cccc-cCCC------CCCCeEEEEe
Confidence 0 0000 0000 0000 0011247889
Q ss_pred EEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec-ccCChHHHh-cceEEE
Q 040099 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI-QKLQVKWLR-QQMGVV 1092 (1236)
Q Consensus 1015 ~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di-~~i~~~~lR-~~i~~V 1092 (1236)
|++..-+ + ..+.+++|||+|++||.+||.|-.|.|-|.|+.+|.|+.+|.+|+|.++|.|+ ...+...+| ..+++|
T Consensus 262 ~L~v~~~-~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~~~~~r~~G~~~V 339 (501)
T COG3845 262 DLSVKDR-R-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLSPRERRRLGLAYV 339 (501)
T ss_pred eeEeecC-C-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCCHHHHHhcCCccC
Confidence 9988643 2 24679999999999999999999999999999999999999999999999997 566766655 469999
Q ss_pred cCCCC----CChhhHHHHHHH---------------HhhhchHHHhhhhchhhhh---cCCCCCCChhHHHHHHHHHHHc
Q 040099 1093 SQEPV----LFSDTIRANIAE---------------MANANGFISGLQEGYDTLV---GERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1093 ~Qdp~----LF~gTIreNL~~---------------~a~~~~~i~~lp~Gldt~v---ge~G~~LSGGQrQRlaLARALl 1150 (1236)
|.|.+ ..+-|+.||+.- .-.+..+...+-+.||-.- .....+||||+.||+-+||-|.
T Consensus 340 PedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGNqQK~IlaREl~ 419 (501)
T COG3845 340 PEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGNQQKLILARELA 419 (501)
T ss_pred ChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcceehhhhhhhhc
Confidence 99984 567799999840 0111122223333333221 1233589999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
++|++||..+||-+||..+.+.|.+.|.+.. +|+.|++|+-.|+.+.. ||||.||.+|+|+....+++
T Consensus 420 ~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~~~~~ 489 (501)
T COG3845 420 RRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIVPPEE 489 (501)
T ss_pred cCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccccccc
Confidence 9999999999999999999999999998765 57899999999999966 99999999999998887765
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=423.42 Aligned_cols=216 Identities=34% Similarity=0.580 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC-CCCHHHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK-EFQLKWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 462 (1236)
-|+++||+++|. +..||+|||++|++||+++|+||||||||||+++|.|+.+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg---~~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFG---DKEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeC---CeEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 389999999996 357999999999999999999999999999999999999999999999998774 3378889999
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC---CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT---HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+|+|+|+..||+- |+.||+.++.- ..+.++ ..+.++.+++.+-.+..| .+||||||||+||
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~VGL~~ka~~yP-----------~qLSGGQqQRVAI 147 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKVGLADKADAYP-----------AQLSGGQQQRVAI 147 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHcCchhhhhhCc-----------cccCcHHHHHHHH
Confidence 9999999999975 99999998732 223333 233444555555555554 5999999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
||||+.+|+++++|||||||||+....+.+.++++.+ |.|.|+|||.+.+++. ||||+.||+|+|+++|+++++..+|
T Consensus 148 ARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p 227 (240)
T COG1126 148 ARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNP 227 (240)
T ss_pred HHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCC
Confidence 9999999999999999999999999999999999864 7899999999999987 9999999999999999999999876
Q ss_pred c
Q 040099 613 Y 613 (1236)
Q Consensus 613 ~ 613 (1236)
.
T Consensus 228 ~ 228 (240)
T COG1126 228 K 228 (240)
T ss_pred C
Confidence 4
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-51 Score=455.27 Aligned_cols=223 Identities=28% Similarity=0.513 Sum_probs=209.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.|+|+||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|+|+++ .+|+|++||+|+..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 579999999999743 2469999999999999999999999999999999999998 78999999999999999999999
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+||||+|.+|++|+++|++ +.+++.+++.++|++|++.++++|.+||||||||+|||||++++|+
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p~ 158 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGKWSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKAK 158 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccCCCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999994 4456677889999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
||||||||++||+.+++.+++.|++.+.++|+|+||||++++..||||+||++|+|+|.|+|++|+++ .+.|++++...
T Consensus 159 illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~ 237 (275)
T cd03289 159 ILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISPS 237 (275)
T ss_pred EEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhhc
Confidence 99999999999999999999999988888999999999999999999999999999999999999996 78899988653
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-50 Score=429.94 Aligned_cols=218 Identities=38% Similarity=0.591 Sum_probs=190.6
Q ss_pred EEEEeEEEECCCC--CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHH
Q 040099 385 IELKDVNFSYPAR--PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~ 459 (1236)
|++++|++.|+.. +...+|+||||+|++||+.||||+||||||||++++.++..|++|+|.+||+|+..++. ..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999752 12569999999999999999999999999999999999999999999999999887765 456
Q ss_pred hcceEEEccCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLS-SSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|++|||+||++.|++ .||++|++|...- .++ +++.+.++.+++.|+..+ .+.+|||||||||
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLelVgL~dk~~~-----------yP~qLSGGQKQRV 150 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLELVGLSDKADR-----------YPAQLSGGQKQRV 150 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHHcCChhhhcc-----------CchhcCcchhhHH
Confidence 789999999999997 6999999997532 223 334455555555555444 4569999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|+||+.|||||||||+|.+.|.+.|+++.+ |-|+++|||.++.++. |||+.||++|+++|+|+..++.
T Consensus 151 aIARALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF 230 (339)
T COG1135 151 AIARALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVF 230 (339)
T ss_pred HHHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhh
Confidence 999999999999999999999999999999999998853 7899999999999987 9999999999999999999999
Q ss_pred cccc
Q 040099 610 ENPY 613 (1236)
Q Consensus 610 ~~~~ 613 (1236)
.+|.
T Consensus 231 ~~Pk 234 (339)
T COG1135 231 ANPK 234 (339)
T ss_pred cCcc
Confidence 8864
|
|
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-49 Score=441.59 Aligned_cols=237 Identities=27% Similarity=0.464 Sum_probs=220.1
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
|.|+++|++|+|+.. +.++|+|+||+|++||+++|+||||||||||+++|.|+++ ++|+|++||.++..++...+|++
T Consensus 1 g~i~~~nls~~~~~~-~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~~~lr~~ 78 (275)
T cd03289 1 GQMTVKDLTAKYTEG-GNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPLQKWRKA 78 (275)
T ss_pred CeEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCHHHHhhh
Confidence 468999999999742 3569999999999999999999999999999999999998 79999999999999999999999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||||++.+|++|+++|+....+ .++++++++++.+++.+++.++|++++|.++++|.+||||||||++||||++++|
T Consensus 79 i~~v~q~~~lf~~tv~~nl~~~~~-~~~~~~~~~l~~~gL~~~~~~~p~~l~~~~~~~g~~LS~G~~qrl~LaRall~~p 157 (275)
T cd03289 79 FGVIPQKVFIFSGTFRKNLDPYGK-WSDEEIWKVAEEVGLKSVIEQFPGQLDFVLVDGGCVLSHGHKQLMCLARSVLSKA 157 (275)
T ss_pred EEEECCCcccchhhHHHHhhhccC-CCHHHHHHHHHHcCCHHHHHhCcccccceecCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999964322 4678999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
+||||||||++||+.+...+++.|++..+++|+|+||||++++..||||++|++|++++.|++++++++ .+.|++++..
T Consensus 158 ~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 236 (275)
T cd03289 158 KILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLECQRFLVIEENKVRQYDSIQKLLNE-KSHFKQAISP 236 (275)
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEecCCeEeecCCHHHHhhC-cHHHHHHHhh
Confidence 999999999999999999999999988778999999999999989999999999999999999999986 5777777654
Q ss_pred h
Q 040099 623 Q 623 (1236)
Q Consensus 623 ~ 623 (1236)
.
T Consensus 237 ~ 237 (275)
T cd03289 237 S 237 (275)
T ss_pred c
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-50 Score=412.87 Aligned_cols=218 Identities=34% Similarity=0.569 Sum_probs=194.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+|+|||+.|. ++.+++|+||+|++||+++++|||||||||++|+|.|+++|++|+|++||+++++++..++|++||
T Consensus 2 I~~~nvsk~y~---~~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYG---NKKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcC---CceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 78999999996 457999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCc-hhHHHHHhcCCC--CCCH----HHHHHHHHHhccH--HHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKT--HATK----EEIQAAAEAANAS--HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~--~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||-|..-||+ .||.|||++-.. ..++ +++.+.++..+++ +|..+.|+ .|||||+|||.+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~lvgL~p~~~~~RyP~-----------eLSGGQQQRVGv~ 147 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDLVGLDPSEYADRYPH-----------ELSGGQQQRVGVA 147 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHHhCCCHHHHhhcCch-----------hcCcchhhHHHHH
Confidence 9999999996 499999997421 1233 4456667777775 46666664 8999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhH-hhcCeEEEEECCEEEEEeCcccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
|||+.+|+|+++|||++||||.++..+++.+.++.+ ++|+|+|||+++.. +.||||.+|++|+|+..+++++++.+|
T Consensus 148 RALAadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~P 227 (309)
T COG1125 148 RALAADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANP 227 (309)
T ss_pred HHHhcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCc
Confidence 999999999999999999999999999999988864 79999999999986 559999999999999999999999887
Q ss_pred cchh
Q 040099 613 YGAY 616 (1236)
Q Consensus 613 ~~~y 616 (1236)
...|
T Consensus 228 an~F 231 (309)
T COG1125 228 ANDF 231 (309)
T ss_pred cHHH
Confidence 5433
|
|
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=399.39 Aligned_cols=221 Identities=35% Similarity=0.558 Sum_probs=198.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-----cEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA-----GEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-----G~i~~~g~~~~~--~~ 455 (1236)
..++++|+++.|. ++.+|+|||++|++++++|++||||||||||++++.|+.+..+ |+|.++|+|+.+ ++
T Consensus 6 ~~~~~~~l~~yYg---~~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 6 PAIEVRDLNLYYG---DKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred ceeEecceeEEEC---chhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 3589999999996 4579999999999999999999999999999999999999875 999999999975 57
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
...+|++||+|+|.|.-|+.||+||++||..- .-++-++++++.|.+++-+.. .+.+.+..|||||+
T Consensus 83 ~~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD-------rL~~sa~~LSGGQQ 155 (253)
T COG1117 83 VVELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD-------RLHKSALGLSGGQQ 155 (253)
T ss_pred HHHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH-------HhhCCccCCChhHH
Confidence 89999999999999999999999999998421 113557788899988877643 34567788999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||+||||||.-+|+||+||||||||||.+...|.+.+.+++++-|+|+|||.+..... +|+..++.+|+++|.|+.+++
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~i 235 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKI 235 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhh
Confidence 9999999999999999999999999999999999999999988999999999998755 999999999999999999999
Q ss_pred ccccc
Q 040099 609 LENPY 613 (1236)
Q Consensus 609 ~~~~~ 613 (1236)
..+|.
T Consensus 236 F~~P~ 240 (253)
T COG1117 236 FTNPK 240 (253)
T ss_pred hcCcc
Confidence 88753
|
|
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=398.50 Aligned_cols=211 Identities=34% Similarity=0.539 Sum_probs=184.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc-cCChHHHhcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ-KLQVKWLRQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~-~i~~~~lR~~ 1088 (1236)
-|+++||+.+|.. ..||+|||++|++||.++|+||||||||||+++|.++-+|++|+|.+||.++. ..+...+|++
T Consensus 2 mi~i~~l~K~fg~---~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~~~~~~R~~ 78 (240)
T COG1126 2 MIEIKNLSKSFGD---KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKKDILKLRRK 78 (240)
T ss_pred eEEEEeeeEEeCC---eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchhhHHHHHHh
Confidence 3899999999973 46999999999999999999999999999999999999999999999998774 3378999999
Q ss_pred eEEEcCCCCCChh-hHHHHHH---------HHhhh----chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSD-TIRANIA---------EMANA----NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~---------~~a~~----~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+|+|...||+- |+.||+. ..+.+ .++.+.. |+......-..+||||||||+||||||..+|+
T Consensus 79 vGmVFQ~fnLFPHlTvleNv~lap~~v~~~~k~eA~~~A~~lL~~V--GL~~ka~~yP~qLSGGQqQRVAIARALaM~P~ 156 (240)
T COG1126 79 VGMVFQQFNLFPHLTVLENVTLAPVKVKKLSKAEAREKALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMDPK 156 (240)
T ss_pred cCeecccccccccchHHHHHHhhhHHHcCCCHHHHHHHHHHHHHHc--CchhhhhhCccccCcHHHHHHHHHHHHcCCCC
Confidence 9999999999975 9999984 11111 1222211 44444456678999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
|+++|||||||||+.-..|.+.++++. .|.|.|+|||.+...++ ||||+.||+|+|+|+|+|+++..++..
T Consensus 157 vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g~p~~~f~~p~~ 229 (240)
T COG1126 157 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEGPPEEFFDNPKS 229 (240)
T ss_pred EEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEecCHHHHhcCCCC
Confidence 999999999999999999999999886 46799999999999987 999999999999999999999987543
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-45 Score=399.28 Aligned_cols=473 Identities=20% Similarity=0.234 Sum_probs=366.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHH
Q 040099 108 KKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFI 187 (1236)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~ 187 (1236)
..+.++..+..+.+.+........|+++.+++|.++.++++.-|+.-+++. +++.++.++++|+..|. +-...++.+.
T Consensus 52 ~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier~-~~~rlla~L~~Dvr~IS-f~~s~lp~~~ 129 (546)
T COG4615 52 PEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIERL-GSARLLAGLTSDVRNIS-FAFSRLPELV 129 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHh-cccchhhhhccccccee-ehHhhhHHHH
Confidence 344455555556667777888889999999999999999999999999998 99999999999999999 4445568889
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHH--
Q 040099 188 QFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQ-- 265 (1236)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~-- 265 (1236)
.+.+..+++.+++.|+|+++.+++++.+.+.++...+...+..+.....++..+++....+-.+.|-+..+....-.+
T Consensus 130 qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~~~~ 209 (546)
T COG4615 130 QAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERAEYV 209 (546)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHHHHH
Confidence 999999999999999999999999998888888888888899999999999999999999999999999998653222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 266 ASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCL 345 (1236)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~ 345 (1236)
..++|....++..+...+..........+.+++.+....+++|+.... +--+.....++...++++-.|+.+....+
T Consensus 210 h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~---~w~st~~a~tivlvlLflr~pL~s~vgil 286 (546)
T COG4615 210 HNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSL---GWASTNVAATIVLVLLFLRTPLLSAVGIL 286 (546)
T ss_pred HhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh---ccchhhHHHHHHHHHHHHhhHHHHHHhhh
Confidence 223333333333332222222222233344455555555555544322 22222333344455556678999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCc
Q 040099 346 SAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSG 425 (1236)
Q Consensus 346 ~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsG 425 (1236)
+.+.+|.+|++||.++-..|+. .+.. .+...++. ..|+++||.|+|+.. ..-+..||++|++||+|-|+|.||||
T Consensus 287 P~l~~AqvA~~kiakle~~~~~-a~~~-~~q~~p~~-~~lelrnvrfay~~~--~FhvgPiNl~ikrGelvFliG~NGsG 361 (546)
T COG4615 287 PTLLTAQVAFNKIAKLELAPYK-ADFP-RPQAFPDW-KTLELRNVRFAYQDN--AFHVGPINLTIKRGELVFLIGGNGSG 361 (546)
T ss_pred hHHHHHHHHHHHHHHhhcCCcc-ccCC-CCCcCCcc-cceeeeeeeeccCcc--cceecceeeEEecCcEEEEECCCCCc
Confidence 9999999999999987543332 2211 11222333 469999999999742 24578899999999999999999999
Q ss_pred HHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCC-CCHHHHHHHHHHhccHH
Q 040099 426 KSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH-ATKEEIQAAAEAANASH 504 (1236)
Q Consensus 426 KSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~ 504 (1236)
|||++++|.|+|.|++|+|++||+++..-++++.|+-++-|+-|.|||+.++ |.+. ++++.+..-++...+..
T Consensus 362 KST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll------~~e~~as~q~i~~~LqrLel~~ 435 (546)
T COG4615 362 KSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLL------GPEGKASPQLIEKWLQRLELAH 435 (546)
T ss_pred HHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhh------CCccCCChHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999998765 4333 67776666555544433
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCc
Q 040099 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRL 582 (1236)
Q Consensus 505 ~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~ 582 (1236)
... +-+|-=+ ...||-|||.|+|+--|++-+.||++|||=-+--||.=++.+.+.+-.+. .|||++.|||+-
T Consensus 436 kts-l~d~~fs-----~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd 509 (546)
T COG4615 436 KTS-LNDGRFS-----NLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDD 509 (546)
T ss_pred hhc-ccCCccc-----ccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCc
Confidence 221 2111111 24699999999999999999999999999999999999999888765443 489999999999
Q ss_pred hhHhhcCeEEEEECCEEEEE
Q 040099 583 SLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 583 ~~~~~ad~i~vl~~G~i~~~ 602 (1236)
....+|||++.|++|+++|.
T Consensus 510 ~YF~~ADrll~~~~G~~~e~ 529 (546)
T COG4615 510 HYFIHADRLLEMRNGQLSEL 529 (546)
T ss_pred hhhhhHHHHHHHhcCceeec
Confidence 99999999999999999875
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-47 Score=430.71 Aligned_cols=193 Identities=28% Similarity=0.400 Sum_probs=150.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|.|.||+|+|++.+ .++++++|-|.++++||+|||+|+|||||++++.+...|+.|.|.-.-.. ++
T Consensus 389 vi~~~nv~F~y~~~~--~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H~-----------~~ 455 (614)
T KOG0927|consen 389 VIMVQNVSFGYSDNP--MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSHN-----------KL 455 (614)
T ss_pred eEEEeccccCCCCcc--hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhccccccccccccccc-----------cc
Confidence 589999999998765 68999999999999999999999999999999999999999998765321 22
Q ss_pred EEEcC---CCCCChhhHHHHHHHHhhh---chHHHhhhh--chhhhh-cCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1090 GVVSQ---EPVLFSDTIRANIAEMANA---NGFISGLQE--GYDTLV-GERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1090 ~~V~Q---dp~LF~gTIreNL~~~a~~---~~~i~~lp~--Gldt~v-ge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
++..| |...++-|.-|++.+...- .+.+.+.-. |++... .-.-.+||+|||.|+++||.+++.|.||||||
T Consensus 456 ~~y~Qh~~e~ldl~~s~le~~~~~~~~~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlFa~l~~kqP~lLlLDE 535 (614)
T KOG0927|consen 456 PRYNQHLAEQLDLDKSSLEFMMPKFPDEKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLFARLAVKQPHLLLLDE 535 (614)
T ss_pred hhhhhhhHhhcCcchhHHHHHHHhccccchHHHHHHHHHHhCCCccccccchhhcccccchhHHHHHHHhcCCcEEEecC
Confidence 33333 3345667777777533221 122222111 221110 01235899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEe-cChh
Q 040099 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEK-GSHE 1217 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~-Gt~~ 1217 (1236)
||++||.+|-..+.++|.+. ..+||+|+|+...|.+ +++|.+.++|.+... |...
T Consensus 536 PtnhLDi~tid~laeaiNe~--~Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~~G~i~ 592 (614)
T KOG0927|consen 536 PTNHLDIETIDALAEAINEF--PGGVVLVSHDFRLISQVAEEIWVCENGTVTKWDGDIE 592 (614)
T ss_pred CCcCCCchhHHHHHHHHhcc--CCceeeeechhhHHHHHHHHhHhhccCceeecCccHH
Confidence 99999999999999999876 6699999999999976 999999999988654 4443
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-48 Score=411.42 Aligned_cols=211 Identities=35% Similarity=0.563 Sum_probs=184.0
Q ss_pred EEEeEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHHH
Q 040099 1011 VQFLRVSFKYPTR--PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWL 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~l 1085 (1236)
|++++|++.|+.. +...+|+||||+|++||..||+|+||+|||||++++.++-+|++|+|.+||.|+..++ +..+
T Consensus 2 I~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr~~ 81 (339)
T COG1135 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELRQL 81 (339)
T ss_pred eEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHHHH
Confidence 7899999999862 2246899999999999999999999999999999999999999999999999988775 5667
Q ss_pred hcceEEEcCCCCCCh-hhHHHHHH---HHhhh---------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1086 RQQMGVVSQEPVLFS-DTIRANIA---EMANA---------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~-gTIreNL~---~~a~~---------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
|++||+|+|++.|++ .|+.+|++ +.++. .++++- -|+.-.-+.-..+||||||||++|||||..+
T Consensus 82 R~~IGMIFQhFnLLssrTV~~NvA~PLeiag~~k~ei~~RV~elLel--VgL~dk~~~yP~qLSGGQKQRVaIARALa~~ 159 (339)
T COG1135 82 RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIKQRVAELLEL--VGLSDKADRYPAQLSGGQKQRVAIARALANN 159 (339)
T ss_pred HhhccEEeccccccccchHHhhhhhhHhhcCCCHHHHHHHHHHHHHH--cCChhhhccCchhcCcchhhHHHHHHHHhcC
Confidence 889999999999997 79999996 22221 111110 1455555567789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|+||++|||||||||+|-+.|.+.|++..+ |-|+++|||-++.+++ |||+.||++|+|+|+|+-.++..++
T Consensus 160 P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~v~~vF~~P 233 (339)
T COG1135 160 PKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGTVSEVFANP 233 (339)
T ss_pred CCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEeccHHHhhcCc
Confidence 999999999999999999999999988643 6799999999999987 9999999999999999999999875
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=431.80 Aligned_cols=224 Identities=29% Similarity=0.484 Sum_probs=197.0
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--
Q 040099 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE-- 453 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~-- 453 (1236)
..+.|+++|++++|++ ..+++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.+||+++..
T Consensus 77 ~~~~i~~~nls~~y~~-~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~ 155 (329)
T PRK14257 77 HANVFEIRNFNFWYMN-RTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKK 155 (329)
T ss_pred cCceEEEEeeEEEecC-CCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccc
Confidence 3467999999999964 23579999999999999999999999999999999999997 579999999999973
Q ss_pred CCHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CCCHHH-----HHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 454 FQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HATKEE-----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 454 ~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~-----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
.+...+|+.++||||+|++|++|++|||.|+.. ..++++ +.++++.+++ ++++++.++++|.+|||
T Consensus 156 ~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L-------~~~l~~~~~~~~~~LSg 228 (329)
T PRK14257 156 ISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAAL-------WDEVKDDLDKAGNALSG 228 (329)
T ss_pred cchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCC-------cchhhhhhhCCcccCCH
Confidence 455678999999999999999999999998742 123333 3444555543 44567889999999999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCc
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||++||||++++|+|||||||||+||+++...+.+.|+++.+++|+|+|||+++++.. ||||+||++|+|++.|++
T Consensus 229 GqkqRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~ 308 (329)
T PRK14257 229 GQQQRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGET 308 (329)
T ss_pred HHHHHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998888999999999999987 999999999999999999
Q ss_pred ccccccc
Q 040099 606 SELLENP 612 (1236)
Q Consensus 606 ~~l~~~~ 612 (1236)
+++...+
T Consensus 309 ~~l~~~~ 315 (329)
T PRK14257 309 KTIFIHP 315 (329)
T ss_pred HHHhcCC
Confidence 9998764
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=430.85 Aligned_cols=218 Identities=30% Similarity=0.435 Sum_probs=192.7
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeecc--
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQ-- 1078 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~-- 1078 (1236)
+..+.|+|+|++++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++ |++|+|.|||+|++
T Consensus 76 ~~~~~i~~~nls~~y~~~-~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~ 154 (329)
T PRK14257 76 NHANVFEIRNFNFWYMNR-TKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSK 154 (329)
T ss_pred CcCceEEEEeeEEEecCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccc
Confidence 345689999999999743 2469999999999999999999999999999999999997 57999999999997
Q ss_pred cCChHHHhcceEEEcCCCCCChhhHHHHHHHHhh---h--ch--------HHH--hhhhchhhhhcCCCCCCChhHHHHH
Q 040099 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMAN---A--NG--------FIS--GLQEGYDTLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1079 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~---~--~~--------~i~--~lp~Gldt~vge~G~~LSGGQrQRl 1143 (1236)
.++...+|++++||||+|.+|++|++|||.-... . .+ .+. .+++++++.++++|.+||||||||+
T Consensus 155 ~~~~~~lr~~i~~v~q~~~~~~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqkqRl 234 (329)
T PRK14257 155 KISSLELRTRIGMVFQKPTPFEMSIFDNVAYGPRNNGINDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQQRL 234 (329)
T ss_pred ccchHhhhccEEEEecCCccCCCcHHHHHHhHHHhcCCChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHHHHH
Confidence 4566789999999999999999999999961111 1 11 111 2455678899999999999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++++|+|||||||||+||+++...+++.|++.++++|+|+|||+++++.. ||||+||++|+|+|.|+|+++...
T Consensus 235 ~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~~~~l~~~ 314 (329)
T PRK14257 235 CIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGETKTIFIH 314 (329)
T ss_pred HHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999999889999999999999987 999999999999999999999876
Q ss_pred cC
Q 040099 1223 KN 1224 (1236)
Q Consensus 1223 ~~ 1224 (1236)
+.
T Consensus 315 ~~ 316 (329)
T PRK14257 315 PK 316 (329)
T ss_pred CC
Confidence 33
|
|
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=411.67 Aligned_cols=235 Identities=48% Similarity=0.770 Sum_probs=215.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|+.. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 4789999999642 356999999999999999999999999999999999999999999999999998877778888999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++++|+.|++||+.++.+....+++.++++..++.+++..+|.|+++..+..+.+||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 99999999999999999987654456677778888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHH
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIR 621 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~ 621 (1236)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++++++.+ .+.|..++.
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 235 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQ 235 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHh
Confidence 9999999999999999999999998778999999999999988999999999999999999999877 677776653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-46 Score=372.30 Aligned_cols=207 Identities=30% Similarity=0.558 Sum_probs=186.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 461 (1236)
|+|+||++.|+.. +++|+||||+|++||++-++||||||||||+|+|.+...|+.|+|.++|+|+..++. ..+|+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7899999999853 679999999999999999999999999999999999999999999999999977654 45899
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCC------CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKT------HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+||+|+||..|.. .||+||++|... ..-.+++.++++.+++.+-...+|. .|||||+||+||
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~-----------~LSGGEQQRvaI 148 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPS-----------QLSGGEQQRVAI 148 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCcc-----------ccCchHHHHHHH
Confidence 9999999998775 599999999632 1224678889999999999999986 899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
|||++.+|++||-||||.+|||.+...|++.+.++. .|.||++.||+.+.+.. -.|++.+++|+++....
T Consensus 149 ARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~ 220 (223)
T COG2884 149 ARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDES 220 (223)
T ss_pred HHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEeccc
Confidence 999999999999999999999999999999999885 48999999999999987 56899999999987554
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-46 Score=384.85 Aligned_cols=223 Identities=35% Similarity=0.541 Sum_probs=193.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HH
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WI 459 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~ 459 (1236)
..|++++|+|+|. ++.+|+||||+|++||+++|+||||||||||+++|.|+..|++|+|+++|+|+.+++.+ .+
T Consensus 7 ~~I~vr~v~~~fG---~~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~i 83 (263)
T COG1127 7 PLIEVRGVTKSFG---DRVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEI 83 (263)
T ss_pred ceEEEeeeeeecC---CEEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHH
Confidence 3699999999995 45799999999999999999999999999999999999999999999999999888754 56
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCC---CCCHHHHHH----HHHHhccHHH-HHhCCCCccccccCCCCCCChHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQA----AAEAANASHF-IKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~----~~~~~~~~~~-i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
|+++|+++|...||+. ||+||+.|... ..+++++++ .++.+++... .+.+| .+||||++.
T Consensus 84 r~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~P-----------sELSGGM~K 152 (263)
T COG1127 84 RKRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYP-----------SELSGGMRK 152 (263)
T ss_pred HhheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCc-----------hhhcchHHH
Confidence 8999999999999987 99999999633 234455443 3455565554 44444 589999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|+|||||+..||+|+++|||||+|||.+...+-+.|+++.+ +-|+++|||+++++.. |||++++.||+|+.+|+++|
T Consensus 153 RvaLARAialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~e 232 (263)
T COG1127 153 RVALARAIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEE 232 (263)
T ss_pred HHHHHHHHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999988864 7899999999999876 89999999999999999999
Q ss_pred ccccccchhhhh
Q 040099 608 LLENPYGAYNRL 619 (1236)
Q Consensus 608 l~~~~~~~y~~~ 619 (1236)
+.+.++..-+++
T Consensus 233 l~~sd~P~v~qf 244 (263)
T COG1127 233 LLASDDPWVRQF 244 (263)
T ss_pred HHhCCCHHHHHH
Confidence 998744433333
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=386.18 Aligned_cols=213 Identities=33% Similarity=0.538 Sum_probs=186.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+|+|||++|.+ ..+++|+||+|++||.+.++|||||||||+++++.|+++|++|+|+|||.||++++...||++||
T Consensus 2 I~~~nvsk~y~~---~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~~~LRr~IG 78 (309)
T COG1125 2 IEFENVSKRYGN---KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDPVELRRKIG 78 (309)
T ss_pred ceeeeeehhcCC---ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCHHHHHHhhh
Confidence 789999999974 35999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCChh-hHHHHHHH------------HhhhchHHHhhhhchhh--hhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSD-TIRANIAE------------MANANGFISGLQEGYDT--LVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~------------~a~~~~~i~~lp~Gldt--~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
||-|..-||+- ||.|||+- ...+.++... -|+|. ....-...|||||+||+.+||||..+|+|
T Consensus 79 YviQqigLFPh~Tv~eNIa~VP~L~~w~k~~i~~r~~ELl~l--vgL~p~~~~~RyP~eLSGGQQQRVGv~RALAadP~i 156 (309)
T COG1125 79 YVIQQIGLFPHLTVAENIATVPKLLGWDKERIKKRADELLDL--VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPI 156 (309)
T ss_pred hhhhhcccCCCccHHHHHHhhhhhcCCCHHHHHHHHHHHHHH--hCCCHHHHhhcCchhcCcchhhHHHHHHHHhcCCCe
Confidence 99999999965 99999961 1222222221 13432 23445678999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|++|||.+||||.|...+|+-+.+.-+ ++|+|+|||+++... -+|||+||++|+|+.+|+|+++++++...|-
T Consensus 157 lLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~~P~~il~~Pan~FV 232 (309)
T COG1125 157 LLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYDTPDEILANPANDFV 232 (309)
T ss_pred EeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeCCHHHHHhCccHHHH
Confidence 999999999999999999999877643 689999999999874 5999999999999999999999998765553
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-46 Score=399.88 Aligned_cols=214 Identities=34% Similarity=0.548 Sum_probs=192.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++|+|+ ++++|+|+||+|++||+++|+||||||||||+|+|+|+.+|.+|+|++||+++.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~---~~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYG---GKPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEEC---CeeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 378999999996 35799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCC-CCchhHHHHHhcCCCCC-------C---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPV-LLSSSIRDNIAYGKTHA-------T---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~-l~~~ti~~ni~~g~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|||||++. -|.-||+|-+.+|+... + .+.+.++++..++.++..+. -..||||||||+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~-----------~~~LSGGerQrv 147 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRP-----------VDELSGGERQRV 147 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCc-----------ccccChhHHHHH
Confidence 99999974 46679999999996321 2 23577788888888776543 347999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhH-hhcCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~-~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
.|||||+++|+||+||||||+||...+..+++.++++. +|+|+|+|.|++... +.||++++|++|+++.+|+++|.+
T Consensus 148 ~iArALaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evl 227 (258)
T COG1120 148 LIARALAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVL 227 (258)
T ss_pred HHHHHHhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhc
Confidence 99999999999999999999999999999999999986 369999999999886 569999999999999999999998
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
..
T Consensus 228 T~ 229 (258)
T COG1120 228 TE 229 (258)
T ss_pred CH
Confidence 75
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-46 Score=414.03 Aligned_cols=216 Identities=33% Similarity=0.559 Sum_probs=195.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|+|+.+|++|+|++||.++.+++++. +.|
T Consensus 3 ~i~l~~v~K~yg~~---~~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF---EVLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999631 2999999999999999999999999999999999999999999999999999998874 689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCC------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHA------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|+|+|+..||+- ||+|||+||.... .++++.++++..++.+.+++.|. +||||||||+||||
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~-----------~LSGGQrQRVAlaR 146 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPL-----------QLSGGQRQRVALAR 146 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcc-----------cCChhhHHHHHHHH
Confidence 999999999975 9999999985432 25678888999888888888775 89999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+++|++++||||+|+||++.+..+...|+++.+ +.|+|.||||...+.. ||||.||++|+|.+.|++.|+..+|.
T Consensus 147 AlVr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~ 226 (338)
T COG3839 147 ALVRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPA 226 (338)
T ss_pred HHhcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCcc
Confidence 99999999999999999999999999999988754 6799999999988765 99999999999999999999998764
Q ss_pred ch
Q 040099 614 GA 615 (1236)
Q Consensus 614 ~~ 615 (1236)
..
T Consensus 227 n~ 228 (338)
T COG3839 227 NL 228 (338)
T ss_pred ch
Confidence 43
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=446.98 Aligned_cols=203 Identities=27% Similarity=0.378 Sum_probs=167.9
Q ss_pred EeEEEEECCCC-CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--CCCcEEEECCeecccCChHHHhcce
Q 040099 1013 FLRVSFKYPTR-PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--PSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1013 f~~Vsf~Y~~~-~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
++|+.|.-+.+ ..+..|+|||=-++||..+|++|+||||||||++.|.+-.. ..+|+|+|||.+..+ +..++.+
T Consensus 790 w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q---~tF~R~~ 866 (1391)
T KOG0065|consen 790 WVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ---ETFARVS 866 (1391)
T ss_pred EEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch---hhhcccc
Confidence 44444443221 23568999999999999999999999999999999998754 247999999998765 7899999
Q ss_pred EEEcCCC-CCChhhHHHHHH---------------HHhhhchHHHh--hhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1090 GVVSQEP-VLFSDTIRANIA---------------EMANANGFISG--LQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1090 ~~V~Qdp-~LF~gTIreNL~---------------~~a~~~~~i~~--lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
|||.|++ |+=.-||||-|. +..-.++.++- |++=-|..||..|..||..||.||.||--|+.
T Consensus 867 GYvqQ~DiH~~~~TVrESL~fSA~LRlp~~v~~~ek~~yVe~Vi~lleL~~~~daiVG~~G~GLs~eQRKrLTIgVELvA 946 (1391)
T KOG0065|consen 867 GYVEQQDIHSPELTVRESLRFSAALRLPKEVSDEEKYEYVEEVIELLELKEYADALVGLPGSGLSTEQRKRLTIGVELVA 946 (1391)
T ss_pred ceeecccccCcccchHHHHHHHHHHcCCCcCCHHHHHHHHHHHHHHhCchhhhhhhccCCCCCCCHHHhceeeEEEEEec
Confidence 9999977 555569999985 11223333332 34446889999999999999999999999999
Q ss_pred CC-CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhh--hhcCEEEEEe-CCEEEEecChhH
Q 040099 1152 EP-KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTI--KNAHLIAVVS-QGMIVEKGSHES 1218 (1236)
Q Consensus 1152 ~p-~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti--~~aD~I~Vl~-~G~Ive~Gt~~e 1218 (1236)
|| .||+||||||+||+.+...|.+.+++.. .|+||++.=|.++.. +..|+++.|+ +|+.|..|+..+
T Consensus 947 ~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G~lG~ 1018 (1391)
T KOG0065|consen 947 NPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFGPLGE 1018 (1391)
T ss_pred CCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEecCccc
Confidence 99 9999999999999999999999999975 689999999999964 6799999997 589999988665
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=388.39 Aligned_cols=198 Identities=35% Similarity=0.536 Sum_probs=174.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.+++++|+++|++ ..||+||||+|++||+++|+||||||||||+|+|+|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4889999999964 5799999999999999999999999999999999999999999999999987432 4579
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCCCC------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKTHA------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~~~------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+||+|++.||+ .||+||+.+|.... ..+.+.+.++.+++.+|-++.|. +||||||||+||||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~VgL~~~~~~~P~-----------qLSGGMrQRVaiAR 143 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELVGLAGFEDKYPH-----------QLSGGMRQRVAIAR 143 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHcCCcchhhcCcc-----------ccChHHHHHHHHHH
Confidence 99999999997 69999999986532 13456777778888877777775 89999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEEC--CEEE
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQ--GKIV 600 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~--G~i~ 600 (1236)
||+.+|+||+||||++|||+.|...+++.+.++.+ ++|+++|||+++..- .+|||+||.+ |+|.
T Consensus 144 AL~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~ 212 (248)
T COG1116 144 ALATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIG 212 (248)
T ss_pred HHhcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCccee
Confidence 99999999999999999999999999999988753 689999999999875 4999999999 4553
|
|
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-45 Score=407.15 Aligned_cols=240 Identities=31% Similarity=0.539 Sum_probs=219.0
Q ss_pred CCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 380 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
...+.|+++|++++|+.. ++++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 456789999999999742 2469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++.|+||+|++.+|++|++||+..... ...+++.++.+..++.+++..+|.|+++.+++.+.+||||||||++||||++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~ 172 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECK-CTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFV 172 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCC-CCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999976432 2456677888888999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~ 619 (1236)
++|++|||||||++||+.++..+.+.++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.+...+.|+++
T Consensus 173 ~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~ 252 (257)
T cd03288 173 RKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASL 252 (257)
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHH
Confidence 99999999999999999999999999998877899999999999998899999999999999999999987655667766
Q ss_pred HH
Q 040099 620 IR 621 (1236)
Q Consensus 620 ~~ 621 (1236)
+.
T Consensus 253 ~~ 254 (257)
T cd03288 253 VR 254 (257)
T ss_pred Hh
Confidence 54
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-46 Score=374.19 Aligned_cols=207 Identities=31% Similarity=0.509 Sum_probs=183.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC-----cEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-----GHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~-----G~I~idG~di~~--i~~ 1082 (1236)
.++++|+++.|.. ..+|+|||++|++++.+|++|||||||||++++|.|+.|..+ |+|.+||.||.+ ++.
T Consensus 7 ~~~~~~l~~yYg~---~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d~ 83 (253)
T COG1117 7 AIEVRDLNLYYGD---KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVDV 83 (253)
T ss_pred eeEecceeEEECc---hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCCH
Confidence 5899999999973 469999999999999999999999999999999999999875 999999999965 689
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHH---HH-----hhhch----------HHHhhhhchhhhhcCCCCCCChhHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIA---EM-----ANANG----------FISGLQEGYDTLVGERGVQLSGGQKQRVA 1144 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~---~~-----a~~~~----------~i~~lp~Gldt~vge~G~~LSGGQrQRla 1144 (1236)
-.||+++|+|+|.|.-|+.||+||++ +. ..+++ +|+..++ .+.+.+..|||||+||||
T Consensus 84 ~~lRr~vGMVFQkPnPFp~SIydNVayG~r~~g~~~~~ldeiVe~sLk~AaLWdEVKD----rL~~sa~~LSGGQQQRLc 159 (253)
T COG1117 84 VELRRRVGMVFQKPNPFPMSIYDNVAYGLRLHGIKDKELDEIVESSLKKAALWDEVKD----RLHKSALGLSGGQQQRLC 159 (253)
T ss_pred HHHHHHheeeccCCCCCCchHHHHHHHhHHhhccchHHHHHHHHHHHHHhHhHHHhHH----HhhCCccCCChhHHHHHH
Confidence 99999999999999999999999996 11 11111 1222223 344778889999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1145 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|||||.-+|+|||||||||||||.+...|.+.|.++.++-|+|+|||.+.-..+ +|+..++-.|+++|+|.-+++..++
T Consensus 160 IARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~T~~iF~~P 239 (253)
T COG1117 160 IARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGPTDKIFTNP 239 (253)
T ss_pred HHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcCHHhhhcCc
Confidence 999999999999999999999999999999999999989999999999998755 9999999999999999999998764
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=362.63 Aligned_cols=209 Identities=35% Similarity=0.580 Sum_probs=188.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
+.+++|.|+|... =-..+++|++||++||+||||||||||+|+++||..|.+|+|.|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~-----~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHL-----PMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcc-----eEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 5678999999632 2358899999999999999999999999999999999999999999998877665 45799
Q ss_pred EEccCCCCCch-hHHHHHhcCCCC------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTH------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
+++||..||.- ||++||.+|... ...+.+..++..+++..|.++||. +||||||||+||||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~~vGl~~~~~RLP~-----------~LSGGqRQRvALARc 143 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAAQVGLAGFLKRLPG-----------ELSGGQRQRVALARC 143 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHHHhChhhHhhhCcc-----------ccCchHHHHHHHHHH
Confidence 99999999975 999999999532 235678899999999999999996 899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|+++-|||+||||+|+|||.-+..+...+.++. ++.|+++|||.++.++. +|+++++++|+|.++|+.++++..
T Consensus 144 lvR~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~ 220 (231)
T COG3840 144 LVREQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSG 220 (231)
T ss_pred HhccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhcc
Confidence 999999999999999999999999999998885 46799999999999876 999999999999999999998865
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=385.74 Aligned_cols=206 Identities=37% Similarity=0.528 Sum_probs=173.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---H-
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---I- 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~- 459 (1236)
++++||++.|.... ..++|+++||+|++||++||+||||||||||+++|.|+..|++|+|.++|+|+..++.+. +
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 57899999996422 247999999999999999999999999999999999999999999999999999887533 3
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcC----CCCC--CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYG----KTHA--TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g----~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|++||||+|+..|++. |++|||.+. .... ..+...+.++..++.+... ...+.+|||||||||
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~----------~~~p~eLSGGqqQRV 151 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLL----------KKKPSELSGGQQQRV 151 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhc----------cCCchhcCHHHHHHH
Confidence 4679999999999876 999999963 2111 1233444455555544433 134568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEE
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIV 600 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~ 600 (1236)
||||||+.+|+|++.||||++||+++.+.|++.+.++. .|+|+|+|||+......|||++.|+||++.
T Consensus 152 AIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~ 221 (226)
T COG1136 152 AIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIE 221 (226)
T ss_pred HHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeee
Confidence 99999999999999999999999999999999999984 378999999999999999999999999954
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-46 Score=417.13 Aligned_cols=216 Identities=34% Similarity=0.566 Sum_probs=195.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..++++||+++|. +..+++|+||+|++||+++++|||||||||++++|+||.+|++|+|.+||+++.+++++ ++.
T Consensus 4 ~~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~ 78 (352)
T COG3842 4 PALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRP 78 (352)
T ss_pred ceEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hcc
Confidence 3599999999996 45799999999999999999999999999999999999999999999999999998876 578
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCCC---CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGKT---HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
||+|+|+..||+ .||+|||+||.. ... .+++.++++.+++.++-.+.|. +|||||+||+||
T Consensus 79 ig~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~-----------qLSGGQqQRVAL 147 (352)
T COG3842 79 IGMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPH-----------QLSGGQQQRVAL 147 (352)
T ss_pred cceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChh-----------hhChHHHHHHHH
Confidence 999999999996 599999999965 112 2467888888888888777764 899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||..+|++|+||||.||||.+-+..++..++++.+ |.|.|+|||+.+..- .+|||+||++|+|...|+++|+..+
T Consensus 148 ARAL~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~ 227 (352)
T COG3842 148 ARALVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYER 227 (352)
T ss_pred HHHhhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhC
Confidence 9999999999999999999999999999999988753 789999999998864 5999999999999999999999987
Q ss_pred ccc
Q 040099 612 PYG 614 (1236)
Q Consensus 612 ~~~ 614 (1236)
|..
T Consensus 228 P~~ 230 (352)
T COG3842 228 PAT 230 (352)
T ss_pred cch
Confidence 643
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-45 Score=381.56 Aligned_cols=226 Identities=33% Similarity=0.524 Sum_probs=191.2
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC-CHHHHhc
Q 040099 384 DIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF-QLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-~~~~~r~ 461 (1236)
-++++|+++.|+.+. -.++|+||||+|.+||++||||+||||||||.++|+|+.+|++|+|.++|.++... ..+..++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999997431 11599999999999999999999999999999999999999999999999876543 3446788
Q ss_pred ceEEEccCCC--CCc-hhHHHHHhcCCC----CCCHHHHHHHHHHhccH-HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEPV--LLS-SSIRDNIAYGKT----HATKEEIQAAAEAANAS-HFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~~--l~~-~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
.|-+|||||. |-+ .||++-|.=+.. ....+++.++++.+++. +|..+.|+ +||||||||||
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~~~l~R~P~-----------eLSGGQ~QRia 151 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPPSFLDRRPH-----------ELSGGQRQRIA 151 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCHHHHhcCch-----------hcChhHHHHHH
Confidence 9999999996 333 377776653321 22355688888888875 45666664 89999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCc--eEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINR--TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~--t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||..+|++||||||||+||+..++.|++.|.++.+++ |.|+|||+++.+.+ ||||+||++|+|+|.++.+++..
T Consensus 152 IARAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~ 231 (252)
T COG1124 152 IARALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLS 231 (252)
T ss_pred HHHHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhc
Confidence 9999999999999999999999999999999999987654 99999999999987 99999999999999999999988
Q ss_pred cccchhhhhH
Q 040099 611 NPYGAYNRLI 620 (1236)
Q Consensus 611 ~~~~~y~~~~ 620 (1236)
.+...|.+..
T Consensus 232 ~~~h~ytr~L 241 (252)
T COG1124 232 HPSHPYTREL 241 (252)
T ss_pred CCccHHHHHH
Confidence 7666776543
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-45 Score=378.47 Aligned_cols=213 Identities=35% Similarity=0.564 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---HHHHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r 460 (1236)
.|+++||+..||+ ++.+|+||||+|++||++||+||||||||||+++|.|+.+|++|+|.++|.++...+ .+.+|
T Consensus 3 ~i~~~nl~k~yp~--~~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPG--GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCC--CceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 4899999999984 468999999999999999999999999999999999999999999999999988776 55678
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCCCC-----------CCHHH---HHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGKTH-----------ATKEE---IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~-----------~~~~~---~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
++|||++|++.|.+. ||.+|+..|+-. .++++ ..++++..++.+. .-.+..+||
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-----------A~qra~~LS 149 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-----------AYQRASTLS 149 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-----------HHHHhccCC
Confidence 899999999999875 999999988543 23333 3344455554444 344566899
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEE
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEK 602 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~ 602 (1236)
|||+|||+|||||+++|+|++-|||+|+|||.+.+.+++.|++.. .|.|+|+.-|.++.++. ||||+-|++|+|+.+
T Consensus 150 GGQQQRVaIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfD 229 (258)
T COG3638 150 GGQQQRVAIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFD 229 (258)
T ss_pred cchhHHHHHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEe
Confidence 999999999999999999999999999999999999999999885 47899999999999875 999999999999999
Q ss_pred eCccccc
Q 040099 603 GTHSELL 609 (1236)
Q Consensus 603 g~~~~l~ 609 (1236)
|+.+|+-
T Consensus 230 g~~~el~ 236 (258)
T COG3638 230 GPASELT 236 (258)
T ss_pred CChhhhh
Confidence 9999964
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=400.94 Aligned_cols=233 Identities=50% Similarity=0.793 Sum_probs=213.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDP--GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 478999999963 246999999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+.++.+..+.+++.++++.+++.+.+..+|.|+++.++.++.+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566777888888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
|||||||++||+.+...+.+.|.++.+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|+.++
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~ 233 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMW 233 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHH
Confidence 9999999999999999999999988768899999999999988999999999999999998888765 45555444
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=398.94 Aligned_cols=227 Identities=48% Similarity=0.833 Sum_probs=210.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
++|+++|++++|++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~--~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDE--KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCC--CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 36899999999963 2469999999999999999999999999999999999999999999999999988887888899
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
++|++|++.+|++|++||+.++.+....+++.++++..++.+++..+|.|+++.++....+||||||||++|||||+.+|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999986655667788888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++..+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999998778999999999999888999999999999999988777543
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=400.57 Aligned_cols=231 Identities=55% Similarity=0.908 Sum_probs=211.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++. +.++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999642 236999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+..+.+||||||||++|||||+.+|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999999998665566677788888899999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
+||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++... .+.|+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~ 231 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYA 231 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchh
Confidence 9999999999999999999999998778999999999999988999999999999999999888765 34443
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-45 Score=419.10 Aligned_cols=221 Identities=33% Similarity=0.522 Sum_probs=189.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
|+++||+++|++.+ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..++..+ +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996322 246999999999999999999999999999999999999999999999999998876544 57
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
++||||||++.+|+ .|++||+.++.. ..+. +++.++++..++.++.. ..+.+||||||||++
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~vgL~~~~~-----------~~~~~LSgGqkQRV~ 150 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALVGLGDKHD-----------SYPSNLSGGQKQRVA 150 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhhh-----------CChhhCCHHHHHHHH
Confidence 89999999999986 699999998632 1222 23445555555554443 445689999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 151 IARAL~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~ 230 (343)
T TIGR02314 151 IARALASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFS 230 (343)
T ss_pred HHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHc
Confidence 99999999999999999999999999999999999854 7899999999999965 99999999999999999999987
Q ss_pred cccchh
Q 040099 611 NPYGAY 616 (1236)
Q Consensus 611 ~~~~~y 616 (1236)
++...+
T Consensus 231 ~p~~~~ 236 (343)
T TIGR02314 231 HPKTPL 236 (343)
T ss_pred CCCcHH
Confidence 644333
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=398.10 Aligned_cols=468 Identities=16% Similarity=0.133 Sum_probs=364.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchH------HHHHHhhHHHHHHHHH
Q 040099 107 SKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV------VGRISGDTLLIQDAIG 180 (1236)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l------~sr~~~D~~~i~~~~~ 180 (1236)
...+..++.+..+....+.|+...+..+.-.-+-..+.++.++..-.|+.. ..|.+ =.|+..|+...-+...
T Consensus 89 l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~--~~~~~~~~dNpDQRi~eDi~~~t~~t~ 166 (604)
T COG4178 89 LQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLA--QAGGIGLIDNPDQRIQEDIRNFTETTL 166 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHH--hcccccCCCChHHhHHHHHHHHHhhHH
Confidence 334444444445555566666666666666666667777777777444433 34432 2699999999998888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH---------------HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 181 EKVGKFIQFGASFIGGFLIAFF---------------KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAAT 245 (1236)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~---------------~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (1236)
.....++.++++++...+++.- +...+..++++.+++..++..+++|++.+..-+.++..++...
T Consensus 167 ~l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~ 246 (604)
T COG4178 167 DLSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRY 246 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHH
Confidence 7777888887777766655552 2233445556667777778889999999999999999999999
Q ss_pred HHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHH
Q 040099 246 VVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVM 325 (1236)
Q Consensus 246 ~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~ 325 (1236)
.+.-.-.+...|-.|+.|+.+.++.++......+...+.......+..+......++.++-+..++.....|+++.|.++
T Consensus 247 ~Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lm 326 (604)
T COG4178 247 SLVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLM 326 (604)
T ss_pred HHHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHH
Confidence 99999999999999999999998887777666665554444444344344344444445555567777889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC------CCccccccCCCC--CCCCCCcEEEEeEEEECCCC
Q 040099 326 SVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK------PEIDLCCVNGKK--LDDIRGDIELKDVNFSYPAR 397 (1236)
Q Consensus 326 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~------~~~~~~~~~~~~--~~~~~~~i~~~~v~f~y~~~ 397 (1236)
.....+......++.+...+..+..-++...|+.++.+.- ++..... .... ....+..|+++|++..-|+.
T Consensus 327 qa~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~-~~~~~~~~~~~~~i~~~nl~l~~p~~ 405 (604)
T COG4178 327 QAVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPART-GRRIDFDDNADHGITLENLSLRTPDG 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcc-cccccccccccceeEEeeeeEECCCC
Confidence 9888888888899999999999999999999999986421 1111110 0000 01114679999999998853
Q ss_pred CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 398 PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 398 ~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
...+++.||++++||.+-|.||||||||||+|.|+|+++.-+|+|..-. -..+-|+||.|++-.||.
T Consensus 406 --~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtL 472 (604)
T COG4178 406 --QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTL 472 (604)
T ss_pred --CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccH
Confidence 4789999999999999999999999999999999999999999997652 135899999999999999
Q ss_pred HHHHhcCCCC--CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCC
Q 040099 478 RDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555 (1236)
Q Consensus 478 ~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD 555 (1236)
||-|+|.+.. .+++++.+++.+|++.+++.++.+-. .-...||+|||||+|+||.++++|++++|||+|||||
T Consensus 473 re~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~~-----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALD 547 (604)
T COG4178 473 REALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEED-----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALD 547 (604)
T ss_pred HHHHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhccC-----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccC
Confidence 9999998754 78999999999999999999985422 2345799999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEE
Q 040099 556 SESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 556 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
+++|..+.+.+++...+.|+|-|+||.......++.+-++
T Consensus 548 e~~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 548 EETEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred hHHHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 9999999999999888999999999998887766665554
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-44 Score=400.53 Aligned_cols=227 Identities=61% Similarity=1.024 Sum_probs=208.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|+++.|++..++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 47899999997433357999999999999999999999999999999999999999999999999988777777788899
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+.++.+....+++.+.++..++.+++..+|.|+++..+....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999989999999997655556677777888888999999999999999999999999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ 227 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc
Confidence 9999999999999999999999988778899999999999988999999999999999998888765
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-44 Score=405.23 Aligned_cols=228 Identities=34% Similarity=0.630 Sum_probs=209.5
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l 1085 (1236)
...|.|+++|++++|+.. ...+|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||.++.+.+...+
T Consensus 15 ~~~~~i~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~ 93 (257)
T cd03288 15 GLGGEIKIHDLCVRYENN-LKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPLHTL 93 (257)
T ss_pred cCCceEEEEEEEEEeCCC-CCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCHHHH
Confidence 356789999999999753 2359999999999999999999999999999999999999999999999999999988899
Q ss_pred hcceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
|++++|++|+|.+|++|++||+. +..++.+++..+|.|+++.+++.+.+||||||||++||||+++
T Consensus 94 ~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~l~~~~~~~~~~LS~G~~qrl~laral~~ 173 (257)
T cd03288 94 RSRLSIILQDPILFSGSIRFNLDPECKCTDDRLWEALEIAQLKNMVKSLPGGLDAVVTEGGENFSVGQRQLFCLARAFVR 173 (257)
T ss_pred hhhEEEECCCCcccccHHHHhcCcCCCCCHHHHHHHHHHhCcHHHHhhcccccCcEeccCCCcCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999984 1234455677788899999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
+|++|||||||++||++++..+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++++..++.|+.++
T Consensus 174 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 253 (257)
T cd03288 174 KSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILDADLVLVLSRGILVECDTPENLLAQEDGVFASLV 253 (257)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHhCCEEEEEECCEEEEeCCHHHHHhccchHHHHHH
Confidence 99999999999999999999999999987778999999999999999999999999999999999999987778899888
Q ss_pred hcc
Q 040099 1232 EPH 1234 (1236)
Q Consensus 1232 ~~q 1234 (1236)
..+
T Consensus 254 ~~~ 256 (257)
T cd03288 254 RTD 256 (257)
T ss_pred hcc
Confidence 655
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-45 Score=392.48 Aligned_cols=215 Identities=38% Similarity=0.652 Sum_probs=194.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC-CCCHHHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK-EFQLKWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~-~~~~~~~r~~ 462 (1236)
-++++|++|+|+++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.++|.++. ..+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999854 57999999999999999999999999999999999999999999999999988 4788899999
Q ss_pred eEEEccCC--CCCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 463 IGLVSQEP--VLLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 463 i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+|||+|+| ++|..||.|.++||..+ .+. +++.++++.+++.++..+.| .+||||||||+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p-----------~~LSGGqkqRvaI 149 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPP-----------FNLSGGQKQRVAI 149 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCc-----------cccCCcceeeHHh
Confidence 99999999 79999999999999653 233 34667777777777655555 5899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|.+|+.+|++||||||||+||+...+.+.+.++++.+ ++|+|++||+++.+.. ||++++|++|+++.+|++.++.++
T Consensus 150 A~vLa~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 150 AGVLAMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred hHHHHcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 9999999999999999999999999999999999864 4799999999999876 999999999999999999888765
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-44 Score=392.57 Aligned_cols=220 Identities=35% Similarity=0.605 Sum_probs=205.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.++++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 358999999999742 3479999999999999999999999999999999999999999999999999988888888999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
++|++|++.+++.|++||+.+... ...+++.++++..++.+++.++|.|+++..++.+.+||||||||++|||||+++|
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p 158 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGE-YSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKS 158 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCC-CCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999987643 4567888889999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
+++||||||++||+.++..+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|+
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~ 220 (221)
T cd03244 159 KILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDS 220 (221)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999877889999999999998899999999999998875
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-44 Score=399.13 Aligned_cols=221 Identities=49% Similarity=0.843 Sum_probs=201.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|+.. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (237)
T cd03252 1 ITFEHVRFRYKPD-GPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADPAWLRRQVG 79 (237)
T ss_pred CEEEEEEEecCCC-CccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCHHHHhhcEE
Confidence 5789999999743 246999999999999999999999999999999999999999999999999998888888999999
Q ss_pred EEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||++.+|+.|++||+. +..++.+++..+|.|+++..+..+.+||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~LSgG~~qrv~laral~~~p~l 159 (237)
T cd03252 80 VVLQENVLFNRSIRDNIALADPGMSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRI 159 (237)
T ss_pred EEcCCchhccchHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhCcccccchhhcCCCcCCHHHHHHHHHHHHHhhCCCE
Confidence 999999999999999985 11234456677788898888889999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++++++++ .+.|..++..
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~~ 236 (237)
T cd03252 160 LIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVKNADRIIVMEKGRIVEQGSHDELLAE-NGLYAYLYQL 236 (237)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEEcCHHHHHhc-cChHHHHHhc
Confidence 9999999999999999999999998778999999999999988999999999999999999999986 7888887653
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-44 Score=404.56 Aligned_cols=182 Identities=29% Similarity=0.404 Sum_probs=150.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.+++.+|+|.|++.+. +.+.+++++++.-.++++||++|+||||+++++.+-..|.+|.+-+.+ |.+|
T Consensus 362 ~l~i~~V~f~y~p~~y-~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~~-----------r~ri 429 (582)
T KOG0062|consen 362 NLRISYVAFEYTPSEY-QWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRHP-----------RLRI 429 (582)
T ss_pred eeEEEeeeccCCCcch-hhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeecc-----------ccee
Confidence 6899999999975432 789999999999999999999999999999999999999999998875 6789
Q ss_pred EEEcCCCCCChhhHHHHHHHHhhhchHHHhhh--------------hchhhhhcCCC-CCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQ--------------EGYDTLVGERG-VQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp--------------~Gldt~vge~G-~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|-.|...=| ++...+.-|+.++.- -|++..+.-.. ..||||||-|+++|-+...+|.
T Consensus 430 ~~f~Qhhvd~-------l~~~v~~vd~~~~~~pG~~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrvafA~~~~~~Ph 502 (582)
T KOG0062|consen 430 KYFAQHHVDF-------LDKNVNAVDFMEKSFPGKTEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVAFAACTWNNPH 502 (582)
T ss_pred cchhHhhhhH-------HHHHhHHHHHHHHhCCCCCHHHHHHHHHhcCCCchhhhccccccCCcchhHHHHHHHhcCCCc
Confidence 9999976422 111122222221111 15555554444 5799999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive 1212 (1236)
+|+|||||.+||.++-.++-++|+.. +.-||+|||+.+.+.. |+.++|.++|+|.-
T Consensus 503 lLVLDEPTNhLD~dsl~AL~~Al~~F--~GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 503 LLVLDEPTNHLDRDSLGALAKALKNF--NGGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred EEEecCCCccccHHHHHHHHHHHHhc--CCcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 99999999999999999999999875 5689999999999987 99999999999975
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-43 Score=388.61 Aligned_cols=220 Identities=42% Similarity=0.717 Sum_probs=201.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
++++++|++++|++. ++++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 358999999999632 2469999999999999999999999999999999999999999999999999887777777889
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
++|++|++.+|..|++||+.++.+....+++.+.++..++.+.+.++|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999899999999875544566778888889999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
++|||||||++||+.+...+.+.|+++.+++|+|++||+++.++.||++++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988779999999999998754
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-44 Score=382.44 Aligned_cols=210 Identities=29% Similarity=0.497 Sum_probs=185.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++|+|.+ . ++|+||||++++|++++|+||||||||||+|+|+|+.+|++|+|.+.|.+.+.... +.+|
T Consensus 4 ~i~v~nl~v~y~~--~-~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGN--R-PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECC--E-eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 5899999999963 2 59999999999999999999999999999999999999999999999988765432 4689
Q ss_pred EEEccCC---CCCchhHHHHHhcCCCCC----------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 464 GLVSQEP---VLLSSSIRDNIAYGKTHA----------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 464 ~~v~Q~~---~l~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
|||||.. |-|+.||+|-+.+|+... +.+++.++++.+++.++..+. ...|||||+|
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~~~r~-----------i~~LSGGQ~Q 146 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDLRDRQ-----------IGELSGGQKQ 146 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhhhCCc-----------ccccCcHHHH
Confidence 9999965 568899999999985321 247889999999988776442 3479999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
|+.|||||+++|++|+|||||+++|+.++..+.+.|+++++ |+|+++|||+++.+.. +|+|+.| |++++..|++++.
T Consensus 147 RV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~ 225 (254)
T COG1121 147 RVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEV 225 (254)
T ss_pred HHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhc
Confidence 99999999999999999999999999999999999999965 8999999999999865 9999999 6788899999999
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
+..
T Consensus 226 ~~~ 228 (254)
T COG1121 226 LTE 228 (254)
T ss_pred cCH
Confidence 874
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=404.50 Aligned_cols=222 Identities=26% Similarity=0.467 Sum_probs=189.5
Q ss_pred CcEEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC------
Q 040099 383 GDIELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF------ 454 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------ 454 (1236)
.-|+++|++|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++.+.
T Consensus 20 ~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~ 99 (320)
T PRK13631 20 IILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHEL 99 (320)
T ss_pred ceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcccccccccc
Confidence 3589999999997421 24699999999999999999999999999999999999999999999999998653
Q ss_pred ----------CHHHHhcceEEEccCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccC
Q 040099 455 ----------QLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGE 519 (1236)
Q Consensus 455 ----------~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~ 519 (1236)
....+|++|+||+|+| .+|+.|++|||.++.. ..+.++..+. +.+++..+ |++ ...++
T Consensus 100 ~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~ 172 (320)
T PRK13631 100 ITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKL-----AKFYLNKM--GLDDSYLER 172 (320)
T ss_pred cccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHH-----HHHHHHHc--CCChhHhcC
Confidence 3456889999999998 6899999999998742 2233333221 12445555 564 45778
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECC
Q 040099 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQG 597 (1236)
Q Consensus 520 ~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G 597 (1236)
.+.+||||||||++|||||+++|++|||||||++||+.++..+.+.|.++. +++|+|+|||+++.+. .||+|++|++|
T Consensus 173 ~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G 252 (320)
T PRK13631 173 SPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKG 252 (320)
T ss_pred CcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECC
Confidence 889999999999999999999999999999999999999999999998874 4789999999999875 59999999999
Q ss_pred EEEEEeCccccccc
Q 040099 598 KIVEKGTHSELLEN 611 (1236)
Q Consensus 598 ~i~~~g~~~~l~~~ 611 (1236)
++++.|+++++...
T Consensus 253 ~i~~~g~~~~~~~~ 266 (320)
T PRK13631 253 KILKTGTPYEIFTD 266 (320)
T ss_pred EEEEeCCHHHHhcC
Confidence 99999999998765
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-43 Score=391.34 Aligned_cols=213 Identities=36% Similarity=0.554 Sum_probs=182.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 461 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG---RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999999877654 56788
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCC---CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKT---HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
.|+||+|++.+|+. |++||+.++.. ..+.++ +.++++..+ +.........+||||||||++
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~ 146 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAVG-----------LRGAEDLYPAELSGGMKKRVA 146 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHcC-----------CchhhcCChhhCCHHHHHHHH
Confidence 99999999999886 99999988632 123322 333344443 333344455689999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 ia~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 226 (235)
T cd03261 147 LARALALDPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRA 226 (235)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999998875 99999999999999999998875
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 227 ~ 227 (235)
T cd03261 227 S 227 (235)
T ss_pred C
Confidence 4
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-43 Score=405.69 Aligned_cols=212 Identities=32% Similarity=0.519 Sum_probs=183.1
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
|+++||+++|++.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+.+++... +|
T Consensus 2 I~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l~~~r 81 (343)
T TIGR02314 2 IKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSELTKAR 81 (343)
T ss_pred EEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999997421 246999999999999999999999999999999999999999999999999999887654 58
Q ss_pred cceEEEcCCCCCCh-hhHHHHHHHHh---h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFS-DTIRANIAEMA---N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~-gTIreNL~~~a---~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++|+||||++.+|. .|++||+.-.. + +.+.++.+ |+..........||||||||++|||||+.+|
T Consensus 82 ~~Ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~e~l~~v--gL~~~~~~~~~~LSgGqkQRV~IARAL~~~P 159 (343)
T TIGR02314 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLALV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (343)
T ss_pred cCEEEEECCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHhCC
Confidence 89999999999995 69999996211 1 11112211 4544555677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
+|||||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|+|+|.|++++++..+.
T Consensus 160 ~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~~~~v~~~p~ 233 (343)
T TIGR02314 160 KVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGTVSEIFSHPK 233 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHcCCC
Confidence 99999999999999999999999998754 7899999999999966 99999999999999999999987643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-44 Score=380.47 Aligned_cols=215 Identities=32% Similarity=0.514 Sum_probs=186.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe---ecCCCCHHHHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV---NLKEFQLKWIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~~~~~r 460 (1236)
.|+++|+++.|+. .++++|||++|+.||.+|+.||||||||||+++|+|+..|++|+|.+||. |.++.. .-.
T Consensus 2 ~i~i~~~~~~~~~---~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~--~~~ 76 (345)
T COG1118 2 SIRINNVKKRFGA---FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLA--VRD 76 (345)
T ss_pred ceeehhhhhhccc---ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccc--hhh
Confidence 3788999999963 46999999999999999999999999999999999999999999999999 555433 334
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCC------C--CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKT------H--ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~------~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
++||+|+|+..||. .||+|||+||.+ . ....++.+.++.+++..+-++.| .+||||||||
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lvqL~~la~ryP-----------~QLSGGQrQR 145 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLVQLEGLADRYP-----------AQLSGGQRQR 145 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHhcccchhhcCc-----------hhcChHHHHH
Confidence 68999999999885 699999999962 1 12355666777777776666666 4899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
+||||||..+|++|+||||+++||++..+.+...|+++.. +.|+++|||+.+.+. .||||+||++|+|...|+++|+
T Consensus 146 VALARALA~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev 225 (345)
T COG1118 146 VALARALAVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEV 225 (345)
T ss_pred HHHHHHhhcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHH
Confidence 9999999999999999999999999999999999988753 789999999999875 5999999999999999999999
Q ss_pred cccccc
Q 040099 609 LENPYG 614 (1236)
Q Consensus 609 ~~~~~~ 614 (1236)
..+|..
T Consensus 226 ~~~P~s 231 (345)
T COG1118 226 YDHPAS 231 (345)
T ss_pred hcCCCc
Confidence 877643
|
|
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-43 Score=386.82 Aligned_cols=220 Identities=49% Similarity=0.817 Sum_probs=198.9
Q ss_pred CCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 380 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
...+.++++|++++|+++.+.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 34567999999999975323469999999999999999999999999999999999999999999999999887777777
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++.++|++|++.+|+.|++||+.++.......++.+.++...+.+++..+|.|+++.+.+.+.+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 88999999999999999999999876544445555556667788999999999999999999999999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEE
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKI 599 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i 599 (1236)
++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=407.40 Aligned_cols=218 Identities=31% Similarity=0.500 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3899999999952 24699999999999999999999999999999999999999999999999999877654 4789
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+ .||+|||.|+... .+. +++.++++..++.++..+.| .+||||||||++|||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LSgGq~QRvalAR 147 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARILELEPLLDRKP-----------RELSGGQRQRVAMGR 147 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhHhhCCh-----------hhCCHHHHHHHHHHH
Confidence 99999999996 5999999997431 222 34566677777766665555 489999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+++|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|++++.|+++++..++.
T Consensus 148 AL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~ 227 (356)
T PRK11650 148 AIVREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPA 227 (356)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCc
Confidence 99999999999999999999999999999998754 789999999999875 499999999999999999999987754
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 228 ~~~ 230 (356)
T PRK11650 228 STF 230 (356)
T ss_pred cHH
Confidence 333
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-43 Score=401.04 Aligned_cols=210 Identities=27% Similarity=0.432 Sum_probs=181.7
Q ss_pred cEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-------
Q 040099 1010 EVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL------- 1080 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i------- 1080 (1236)
-|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||+++.+.
T Consensus 21 ~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~~~~~~~~~~ 100 (320)
T PRK13631 21 ILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNHELI 100 (320)
T ss_pred eEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEccccccccccc
Confidence 589999999997421 23599999999999999999999999999999999999999999999999998653
Q ss_pred ---------ChHHHhcceEEEcCCC--CCChhhHHHHHHHH------------hhhchHHHhhhhchh-hhhcCCCCCCC
Q 040099 1081 ---------QVKWLRQQMGVVSQEP--VLFSDTIRANIAEM------------ANANGFISGLQEGYD-TLVGERGVQLS 1136 (1236)
Q Consensus 1081 ---------~~~~lR~~i~~V~Qdp--~LF~gTIreNL~~~------------a~~~~~i~~lp~Gld-t~vge~G~~LS 1136 (1236)
+...+|++++||+|+| .+|+.|++||+.-. ..+.+++..+ |++ ...+..+.+||
T Consensus 101 ~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~LS 178 (320)
T PRK13631 101 TNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVALGVKKSEAKKLAKFYLNKM--GLDDSYLERSPFGLS 178 (320)
T ss_pred ccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhcCCCHHHHHHHHHHHHHHc--CCChhHhcCCcccCC
Confidence 3567899999999998 69999999999511 1122233332 554 45778889999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~G 1214 (1236)
||||||++|||||+++|+|||||||||+||+.++..+.+.|++.. +++|+|+|||+++.+. .||+|+||++|++++.|
T Consensus 179 gGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~vl~~G~i~~~g 258 (320)
T PRK13631 179 GGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKILKTG 258 (320)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999998764 5789999999999884 69999999999999999
Q ss_pred ChhHHhh
Q 040099 1215 SHESLIS 1221 (1236)
Q Consensus 1215 t~~eLl~ 1221 (1236)
+|+++.+
T Consensus 259 ~~~~~~~ 265 (320)
T PRK13631 259 TPYEIFT 265 (320)
T ss_pred CHHHHhc
Confidence 9997654
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-43 Score=385.44 Aligned_cols=212 Identities=38% Similarity=0.610 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCcEEEECCeecCCCC--HH
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY-----DPQAGEVLIDGVNLKEFQ--LK 457 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~~g~~~~~~~--~~ 457 (1236)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGD---KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCC---ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 478999999963 46999999999999999999999999999999999999 999999999999987766 55
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCCCC---C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTHA---T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.++++++|++|++.+|..|++||+.++.... . ++++.++++..++.+...+.++ +.+|||||||
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~---------~~~LSgG~~q 148 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLH---------ALGLSGGQQQ 148 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCC---------cccCCHHHHH
Confidence 6788999999999999789999998753211 1 2344555555555444333211 4689999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 149 rv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 149 RLCLARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999999999999998655899999999998865 999999999999999987764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-43 Score=404.76 Aligned_cols=215 Identities=32% Similarity=0.534 Sum_probs=187.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+||.++.+.+.. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999962 4699999999999999999999999999999999999999999999999999876643 5789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+.. ..+ .+++.++++..++.++..+. +..||||||||+||||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~-----------~~~LSgGq~QRVaLAR 149 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRY-----------VDQISGGQQQRVALAR 149 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHH
Confidence 999999999975 99999999743 122 23455666666665554443 4589999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+++++..++.
T Consensus 150 aL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~ 229 (351)
T PRK11432 150 ALILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPA 229 (351)
T ss_pred HHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998854 789999999999985 499999999999999999999987654
Q ss_pred c
Q 040099 614 G 614 (1236)
Q Consensus 614 ~ 614 (1236)
.
T Consensus 230 ~ 230 (351)
T PRK11432 230 S 230 (351)
T ss_pred c
Confidence 3
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-43 Score=363.56 Aligned_cols=220 Identities=31% Similarity=0.523 Sum_probs=186.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh---HHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV---KWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~---~~lR 1086 (1236)
.|++++|+++|.++ .||+||||+|++||.+||+|+||||||||++++.|+..|++|+|+++|.|+.+++. ..+|
T Consensus 8 ~I~vr~v~~~fG~~---~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~~~ir 84 (263)
T COG1127 8 LIEVRGVTKSFGDR---VILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEELYEIR 84 (263)
T ss_pred eEEEeeeeeecCCE---EEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHHHHHH
Confidence 69999999999754 59999999999999999999999999999999999999999999999999998875 4569
Q ss_pred cceEEEcCCCCCChh-hHHHHHH----HHhhhc-----hHH-Hhhh-hchhhh-hcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIA----EMANAN-----GFI-SGLQ-EGYDTL-VGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~----~~a~~~-----~~i-~~lp-~Gldt~-vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
+++|+++|+-.||+. ||+||+. +..++. +.+ .+|. -|+... ...-.+.||||.+.|.||||||.-||
T Consensus 85 ~r~GvlFQ~gALFssltV~eNVafplre~~~lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLARAialdP 164 (263)
T COG1127 85 KRMGVLFQQGALFSSLTVFENVAFPLREHTKLPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDP 164 (263)
T ss_pred hheeEEeeccccccccchhHhhheehHhhccCCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHHHHhcCC
Confidence 999999999999976 9999985 211111 111 1111 144433 22335689999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHHh
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1230 (1236)
+||++|||||+|||.+...+-+.|+++.. +.|+++|||+++++.. ||||+++.+|+|+..|+++||.+..+...++.
T Consensus 165 ell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~~el~~sd~P~v~qf 244 (263)
T COG1127 165 ELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTPEELLASDDPWVRQF 244 (263)
T ss_pred CEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCHHHHHhCCCHHHHHH
Confidence 99999999999999999999998887653 6899999999999977 89999999999999999999999866655665
Q ss_pred hh
Q 040099 1231 IE 1232 (1236)
Q Consensus 1231 ~~ 1232 (1236)
++
T Consensus 245 ~~ 246 (263)
T COG1127 245 FN 246 (263)
T ss_pred hc
Confidence 54
|
|
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-43 Score=386.77 Aligned_cols=218 Identities=57% Similarity=0.927 Sum_probs=198.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+++ ..++|+|+||++++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (234)
T cd03251 1 VEFKNVTFRYPGD-GPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTLASLRRQIG 79 (234)
T ss_pred CEEEEEEEEeCCC-CccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999753 235899999999999999999999999999999999999999999999999998888888899999
Q ss_pred EEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||+|.+|+.|++||+. +..++.+++..+|.|+++.++.....||||||||++|||||+++|++
T Consensus 80 ~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 159 (234)
T cd03251 80 LVSQDVFLFNDTVAENIAYGRPGATREEVEEAARAANAHEFIMELPEGYDTVIGERGVKLSGGQRQRIAIARALLKDPPI 159 (234)
T ss_pred EeCCCCeeccccHHHHhhccCCCCCHHHHHHHHHHcCcHHHHHhcccCcceeeccCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999995 11234566777788899888888999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHh
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1230 (1236)
|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.|+.+
T Consensus 160 llLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~ 233 (234)
T cd03251 160 LILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIENADRIVVLEDGKIVERGTHEELLAQ-GGVYAKL 233 (234)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEecCCeEeeeCCHHHHHHc-Ccchhhh
Confidence 9999999999999999999999998788999999999999988999999999999999999999886 6666654
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=394.92 Aligned_cols=217 Identities=32% Similarity=0.528 Sum_probs=188.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-++++||+++|++....++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 48999999999742224699999999999999999999999999999999999999999999999999887777888999
Q ss_pred EEEccCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEPV--LLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+||+|+|. ++..||+|||.++... .+. +++.++++..++.++..+. ..+||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LSgGq~qrv~lA 152 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELVGMQDFKERE-----------PARLSGGQKQRVAIA 152 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHHHHHH
Confidence 99999983 5567999999987422 222 3455666666665555444 458999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ |+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 153 GAVAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred HHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999999999998853 7899999999999878999999999999999998887654
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=382.40 Aligned_cols=207 Identities=40% Similarity=0.677 Sum_probs=191.6
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.++++|++++|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (221)
T cd03244 1 GDIEFKNVSLRYRPN-LPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGLHDLRSR 79 (221)
T ss_pred CcEEEEEEEEecCCC-CcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCHHHHhhh
Confidence 468999999999743 2369999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++|+||+|.+|++|++||+. +..++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~LS~G~~qr~~laral~~~p~ 159 (221)
T cd03244 80 ISIIPQDPVLFSGTIRSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARALLRKSK 159 (221)
T ss_pred EEEECCCCccccchHHHHhCcCCCCCHHHHHHHHHHhCcHHHHHhcccccccccccCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999984 2334556777889999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
+|||||||++||+.+...+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|++
T Consensus 160 llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~ 221 (221)
T cd03244 160 ILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIIDSDRILVLDKGRVVEFDSP 221 (221)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCeEEecCCC
Confidence 99999999999999999999999988778899999999999999999999999999998863
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=385.62 Aligned_cols=221 Identities=63% Similarity=1.055 Sum_probs=198.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|+...+.++|+|+||++++||.+||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|++++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 80 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNLRWLRSQIG 80 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCHHHHHhhEE
Confidence 46899999997533346899999999999999999999999999999999999999999999999998888888888999
Q ss_pred EEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|++|+|.+|+.|++||+. +..++.+++..+|.|+++.++....+||||||||++|||||+.+|++
T Consensus 81 ~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la~al~~~p~l 160 (238)
T cd03249 81 LVSQEPVLFDGTIAENIRYGKPDATDEEVEEAAKKANIHDFIMSLPDGYDTLVGERGSQLSGGQKQRIAIARALLRNPKI 160 (238)
T ss_pred EECCchhhhhhhHHHHhhccCCCCCHHHHHHHHHHcChHHHHHhhccccceeeccCCccCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999984 11234456677888899888888899999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhh
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1232 (1236)
|||||||++||+.+.+.+.+.|++..+++|+|++||+++.+..||+|++|++|++++.|+++++.+. .+.++.++.
T Consensus 161 lllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~-~~~~~~~~~ 236 (238)
T cd03249 161 LLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIRNADLIAVLQNGQVVEQGTHDELMAQ-KGVYAKLVK 236 (238)
T ss_pred EEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEEeCCHHHHhhc-ChhHHHHhh
Confidence 9999999999999999999999987778899999999999989999999999999999999999875 555555543
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=384.68 Aligned_cols=220 Identities=54% Similarity=0.838 Sum_probs=200.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|+.. ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~~~~~~~i~ 78 (236)
T cd03253 1 IEFENVTFAYDPG--RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTLDSLRRAIG 78 (236)
T ss_pred CEEEEEEEEeCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCHHHHHhhEE
Confidence 4789999999742 35899999999999999999999999999999999999999999999999999888888999999
Q ss_pred EEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|++|+|.+|++|++||+. +..++.+.+..+|.|+++.+.....+||||||||++|||||+++|++
T Consensus 79 ~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~LS~G~~~rl~la~aL~~~p~l 158 (236)
T cd03253 79 VVPQDTVLFNDTIGYNIRYGRPDATDEEVIEAAKAAQIHDKIMRFPDGYDTIVGERGLKLSGGEKQRVAIARAILKNPPI 158 (236)
T ss_pred EECCCChhhcchHHHHHhhcCCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHhcCCCE
Confidence 999999999999999984 11244556677888999999989999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
|||||||++||+++...+.+.|++..++.|+|++||+++.+..||++++|++|++++.|+++++..+ .+.|+.++..
T Consensus 159 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~d~~~~l~~g~i~~~~~~~~~~~~-~~~~~~~~~~ 235 (236)
T cd03253 159 LLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVNADKIIVLKDGRIVERGTHEELLAK-GGLYAEMWKA 235 (236)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEeeCCHHHHhhc-ccHHHHHHhc
Confidence 9999999999999999999999988778899999999999988999999999999999999999885 6777777654
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=359.95 Aligned_cols=473 Identities=19% Similarity=0.204 Sum_probs=357.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHH
Q 040099 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLS 810 (1236)
Q Consensus 731 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~ 810 (1236)
++..|+++.....+.+.+........+++...++|.++..+++..|+.-+++ ..+++++.++++|+..+. +-...++
T Consensus 50 ~l~~f~~llllf~~ss~is~lg~t~~gq~~I~klr~~~~~kil~tplerier--~~~~rlla~L~~Dvr~IS-f~~s~lp 126 (546)
T COG4615 50 VLPEFLGLLLLFMVSSLISQLGLTTLGQHFIYKLRSEFIKKILDTPLERIER--LGSARLLAGLTSDVRNIS-FAFSRLP 126 (546)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH--hcccchhhhhccccccee-ehHhhhH
Confidence 3444555555555566667777888999999999999999999999999984 789999999999999998 4455677
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHH
Q 040099 811 LLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEE 890 (1236)
Q Consensus 811 ~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~ 890 (1236)
.+.+.....+++...+.+.++++.+++++.+.+.++..++.+.+..+.....++...+.....+..++|.++++...-..
T Consensus 127 ~~~qa~il~l~s~aYLayLSp~mf~l~vV~ivv~~~~~~~~m~rv~k~~~aare~ed~Lq~~y~~il~G~KEL~l~r~R~ 206 (546)
T COG4615 127 ELVQAIILTLGSAAYLAYLSPKMFLLTVVWIVVTIWGGFVLMARVYKHMAAARETEDKLQNDYQTILEGRKELTLNRERA 206 (546)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcchhhheechHHH
Confidence 78888888888999999999999999998888888888888888888888888889999999999999999987543221
Q ss_pred --HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040099 891 --KVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTS 968 (1236)
Q Consensus 891 --~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 968 (1236)
...++|...-+...+...+............+.+.+....+.||+....... +......+.+.+.+.-.|+.++.
T Consensus 207 ~~~h~~~~~~~a~~~r~~~~~~n~f~~la~~~~ni~l~~lIGlvf~lal~~~w~---st~~a~tivlvlLflr~pL~s~v 283 (546)
T COG4615 207 EYVHNNLYIPDAQEYRHHIIRANTFHLLAVNWSNIMLLGLIGLVFWLALSLGWA---STNVAATIVLVLLFLRTPLLSAV 283 (546)
T ss_pred HHHHhhhcCcchHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhhHHHHHHHHHHHHhhHHHHHH
Confidence 2222333222222222111112212233344555555556666666544332 22334445566677888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 040099 969 SLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGES 1048 (1236)
Q Consensus 969 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1048 (1236)
..++.+..+..|.+++.++-..++..+...+ .+.|+. ..|+++||.|+|+... --+..||++|++||.|-|+|.+
T Consensus 284 gilP~l~~AqvA~~kiakle~~~~~a~~~~~--q~~p~~-~~lelrnvrfay~~~~--FhvgPiNl~ikrGelvFliG~N 358 (546)
T COG4615 284 GILPTLLTAQVAFNKIAKLELAPYKADFPRP--QAFPDW-KTLELRNVRFAYQDNA--FHVGPINLTIKRGELVFLIGGN 358 (546)
T ss_pred hhhhHHHHHHHHHHHHHHhhcCCccccCCCC--CcCCcc-cceeeeeeeeccCccc--ceecceeeEEecCcEEEEECCC
Confidence 9999999999999999987554333222111 112222 3699999999998532 3488999999999999999999
Q ss_pred CCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHH-HHHHHHhhhchHHHhhhhchhhh
Q 040099 1049 GSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR-ANIAEMANANGFISGLQEGYDTL 1127 (1236)
Q Consensus 1049 GSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr-eNL~~~a~~~~~i~~lp~Gldt~ 1127 (1236)
||||||++++|.|+|.|++|+|++||.+++.-+++++|+-++-|+-|-+||+.++- ||-..--.+..+.+.|.-.-.|.
T Consensus 359 GsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~ledYR~LfSavFsDyhLF~~ll~~e~~as~q~i~~~LqrLel~~kts 438 (546)
T COG4615 359 GSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQLEDYRKLFSAVFSDYHLFDQLLGPEGKASPQLIEKWLQRLELAHKTS 438 (546)
T ss_pred CCcHHHHHHHHhcccCCCCCceeECCccCCCCCHHHHHHHHHHHhhhHhhhHhhhCCccCCChHHHHHHHHHHHHhhhhc
Confidence 99999999999999999999999999999999999999999999999999987652 11000001112233332222233
Q ss_pred hcCC---CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEE
Q 040099 1128 VGER---GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1128 vge~---G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
+..+ ...||-|||.|+|+--|++-+.||+++||=-+--||.=.+...+.+--.. .|+|++.|||+-.-...|||+
T Consensus 439 l~d~~fs~~kLStGQkKRlAll~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~YF~~ADrl 518 (546)
T COG4615 439 LNDGRFSNLKLSTGQKKRLALLLALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDHYFIHADRL 518 (546)
T ss_pred ccCCcccccccccchHHHHHHHHHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCchhhhhHHHH
Confidence 3222 24699999999999999999999999999999999999999888765433 489999999999999999999
Q ss_pred EEEeCCEEEEec
Q 040099 1203 AVVSQGMIVEKG 1214 (1236)
Q Consensus 1203 ~Vl~~G~Ive~G 1214 (1236)
+-|++|+++|.-
T Consensus 519 l~~~~G~~~e~t 530 (546)
T COG4615 519 LEMRNGQLSELT 530 (546)
T ss_pred HHHhcCceeecc
Confidence 999999999863
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-43 Score=404.01 Aligned_cols=207 Identities=34% Similarity=0.516 Sum_probs=180.5
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----hcceEEEccCCCCCch
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI----REKIGLVSQEPVLLSS 475 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~~ 475 (1236)
+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+..++ |++|+||+|++++|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 569999999999999999999999999999999999999999999999999999888777 7899999999999975
Q ss_pred -hHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEe
Q 040099 476 -SIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLD 548 (1236)
Q Consensus 476 -ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililD 548 (1236)
||+|||.++.+. .+ .+++.++++.+++.+++ ++.+.+||||||||++|||||+.+|+|||||
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~vgL~~~~-----------~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKLVGLEEYE-----------HRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCchhh-----------hCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 999999986432 12 23455556666555444 4445589999999999999999999999999
Q ss_pred CcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 549 EATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 549 E~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
||||+||+.+...+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~~ 226 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEYV 226 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHHH
Confidence 9999999999999999998875 3799999999999864 5999999999999999999999876544443
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-43 Score=404.07 Aligned_cols=217 Identities=29% Similarity=0.465 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.+||+++.+.++. ++.|
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999876654 5789
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+ .||+|||.|+... .+. +++.++++..+ ++......+.+||||||||+||||
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l~-----------L~~~~~~~~~~LSgGq~QRvaLAR 147 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLVG-----------LPGSERKYPGQLSGGQQQRVALAR 147 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcC-----------CCchhhCChhhCCHHHHHHHHHHH
Confidence 99999999996 5999999997431 122 23444444444 444445556799999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 148 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~ 227 (353)
T TIGR03265 148 ALATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPA 227 (353)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 99999999999999999999999999999998754 7899999999998754 99999999999999999999987754
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 228 ~~~ 230 (353)
T TIGR03265 228 TPF 230 (353)
T ss_pred CHH
Confidence 333
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-42 Score=381.79 Aligned_cols=212 Identities=49% Similarity=0.853 Sum_probs=195.2
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.|+++|++++|+.. .++|+|+||+|++||+++|+||||||||||+++|.|+++|.+|+|.+||.++.+.+...+|++
T Consensus 1 ~~l~~~~l~~~~~~~--~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 78 (229)
T cd03254 1 GEIEFENVNFSYDEK--KPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISRKSLRSM 78 (229)
T ss_pred CeEEEEEEEEecCCC--CccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCHHHHhhh
Confidence 468999999999742 358999999999999999999999999999999999999999999999999998888889999
Q ss_pred eEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++|+||++.+|++|++||+. +..++.++...+|.|+++.++....+||||||||++|||||+++|
T Consensus 79 i~~~~q~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~~rv~la~al~~~p 158 (229)
T cd03254 79 IGVVLQDTFLFSGTIMENIRLGRPNATDEEVIEAAKEAGAHDFIMKLPNGYDTVLGENGGNLSQGERQLLAIARAMLRDP 158 (229)
T ss_pred EEEecCCchhhhhHHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcccccCHhhcCCCcCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999985 122445566777889999999889999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++
T Consensus 159 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~~ 227 (229)
T cd03254 159 KILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIKNADKILVLDDGKIIEEGTHDELLAK 227 (229)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhhCCEEEEEeCCeEEEeCCHHHHHhh
Confidence 999999999999999999999999988778999999999999988999999999999999999998765
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-42 Score=402.79 Aligned_cols=222 Identities=40% Similarity=0.611 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
|+++|++|+|+.+. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++..++..+ +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 78999999996211 357999999999999999999999999999999999999999999999999998876543 47
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++||||+|++.+|. .|++||+.++.. ..+.++..+. +.+.++.+ |++........+||||||||++||||
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKAR-----VTELLELV--GLSDKADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHH
Confidence 88999999999886 699999988632 1222222111 12233333 44444455567899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
|+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 233 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPK 233 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCC
Confidence 9999999999999999999999999999998853 7899999999999876 99999999999999999999976543
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-42 Score=386.60 Aligned_cols=218 Identities=32% Similarity=0.492 Sum_probs=188.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCeecCCCCHHHHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD---PQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
.|+++|+++.|++ +++|+|+||++++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.+.+....|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 3789999999963 469999999999999999999999999999999999985 7999999999999888777888
Q ss_pred cceEEEccCCCCCchhHHHHHhcCCCC--------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEPVLLSSSIRDNIAYGKTH--------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++|+|++|++.+|+.|++||+.++... ..++++.++++..++.+++. +...+.+.+||||||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVK-------DKLKQNALALSGGQQQRL 151 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhh-------HHhcCCcccCCHHHHHHH
Confidence 899999999999999999999876311 11223445555555544332 234556779999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 231 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFEN 231 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999999999999999877899999999999886 4999999999999999999998754
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-43 Score=362.81 Aligned_cols=218 Identities=36% Similarity=0.545 Sum_probs=181.6
Q ss_pred cEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-ChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-QVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-~~~~lR~ 1087 (1236)
-++.+|+++.|+.+. ..++|+||||+|.+||++||||+||||||||.++|.|+.+|++|+|.+||.+.... +....++
T Consensus 3 ~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~~~~~~~ 82 (252)
T COG1124 3 LLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKRAKAFYR 82 (252)
T ss_pred eEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCccccchhhcc
Confidence 478999999998542 12499999999999999999999999999999999999999999999999776543 3457889
Q ss_pred ceEEEcCCCC--CC-hhhHHHHHHHHhhhc----------hHHH--hhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1088 QMGVVSQEPV--LF-SDTIRANIAEMANAN----------GFIS--GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1088 ~i~~V~Qdp~--LF-~gTIreNL~~~a~~~----------~~i~--~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
.|.+|+|||. |= .-||++-|.+-.+.+ +... .||. .........||||||||+||||||.-+
T Consensus 83 ~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~~~~~~~~~i~~~L~~VgL~~---~~l~R~P~eLSGGQ~QRiaIARAL~~~ 159 (252)
T COG1124 83 PVQMVFQDPYSSLNPRRTVGRILSEPLRPHGLSKSQQRIAELLDQVGLPP---SFLDRRPHELSGGQRQRIAIARALIPE 159 (252)
T ss_pred ceeEEecCCccccCcchhHHHHHhhhhccCCccHHHHHHHHHHHHcCCCH---HHHhcCchhcChhHHHHHHHHHHhccC
Confidence 9999999995 21 247777775444331 2211 1222 234466788999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCC--eEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~--TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|++||||||||+||.-..++|++.|.+..+++ |.|+|||+++.+.. ||||+||++|+++|.++-+++.+.+...|.+
T Consensus 160 PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~~~~l~~~~~h~ytr 239 (252)
T COG1124 160 PKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGPTEELLSHPSHPYTR 239 (252)
T ss_pred CCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeechhhhhcCCccHHHH
Confidence 99999999999999999999999999887655 99999999999987 9999999999999999999998875556655
Q ss_pred h
Q 040099 1230 L 1230 (1236)
Q Consensus 1230 L 1230 (1236)
.
T Consensus 240 ~ 240 (252)
T COG1124 240 E 240 (252)
T ss_pred H
Confidence 3
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=382.08 Aligned_cols=223 Identities=34% Similarity=0.588 Sum_probs=189.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFG---KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCCCCCchhHHHHHhcCCCCC--CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKTHA--TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
+|++|++.+|+.|++||+.++.... ..+++.+.++..++.+ ........+||||||||++||||++++
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LS~G~~qrl~la~al~~~ 149 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIVGLNK----------EYATRDVKNLSGGEAQRVSIARTLANN 149 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHcCCCH----------HHhhCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999864221 1233444444443321 223455678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...+...|.+
T Consensus 150 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~ 229 (241)
T PRK14250 150 PEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTK 229 (241)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHH
Confidence 999999999999999999999999998753 7899999999999875 9999999999999999999987654334444
Q ss_pred h
Q 040099 619 L 619 (1236)
Q Consensus 619 ~ 619 (1236)
.
T Consensus 230 ~ 230 (241)
T PRK14250 230 L 230 (241)
T ss_pred H
Confidence 3
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-43 Score=375.88 Aligned_cols=210 Identities=33% Similarity=0.527 Sum_probs=179.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++.+|++|+|+++ ++|+|+||+|++||.++|+||||||||||+++|.|+.+|.+|+|++||.|+.+++.+++.+++
T Consensus 2 ~L~~~~ls~~y~~~---~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~kelAk~i 78 (258)
T COG1120 2 MLEVENLSFGYGGK---PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSPKELAKKL 78 (258)
T ss_pred eeEEEEEEEEECCe---eEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCHHHHhhhE
Confidence 37899999999844 599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCC-CCChhhHHHHHH--HHhhhc--------h--HH-Hhhh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEP-VLFSDTIRANIA--EMANAN--------G--FI-SGLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp-~LF~gTIreNL~--~~a~~~--------~--~i-~~lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|||||++ .-|.-||+|=+. +..+.. | .+ +.|. -|+.......-..||||||||+.|||||.++|+
T Consensus 79 a~vpQ~~~~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~la~r~~~~LSGGerQrv~iArALaQ~~~ 158 (258)
T COG1120 79 AYVPQSPSAPFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHLADRPVDELSGGERQRVLIARALAQETP 158 (258)
T ss_pred EEeccCCCCCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHHhcCcccccChhHHHHHHHHHHHhcCCC
Confidence 9999996 455668888764 000000 0 00 1111 134444445567899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti-~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+||||||+||....-.|++.+++.. +++|+|+|.|+++.. +.||++++|++|+|+.+|+|+|.+..
T Consensus 159 iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p~evlT~ 229 (258)
T COG1120 159 ILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTPEEVLTE 229 (258)
T ss_pred EEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCcchhcCH
Confidence 999999999999999999999999986 368999999999876 56999999999999999999998864
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=389.27 Aligned_cols=212 Identities=34% Similarity=0.605 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+..+++++|
T Consensus 4 ~l~~~~l~~~~~~--~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKD--GTKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCC--CCeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 4899999999963 24699999999999999999999999999999999999999999999999999888888888899
Q ss_pred EEEccCC--CCCchhHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEP--VLLSSSIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~--~l~~~ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+||+|+| .++..|++||+.++.. ..+ .+++.++++..++.++..+.| ..||||||||++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~-----------~~LSgG~~qrv~la 150 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPP-----------YHLSYGQKKRVAIA 150 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCCh-----------hhCCHHHHHHHHHH
Confidence 9999998 5788899999998632 122 234556666666665555444 48999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 151 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 225 (274)
T PRK13647 151 GVLAMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLL 225 (274)
T ss_pred HHHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHh
Confidence 99999999999999999999999999999999885 4789999999999985 5999999999999999998654
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-42 Score=401.64 Aligned_cols=217 Identities=32% Similarity=0.543 Sum_probs=189.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ .++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5999999999963 4699999999999999999999999999999999999999999999999999876654 4689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+... .+ .+++.++++..++.++..+.| .+||||||||++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p-----------~~LSgGq~QRVaLAR 157 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKP-----------HQLSGGQQQRVAIAR 157 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCCh-----------hhCCHHHHHHHHHHH
Confidence 999999999965 999999987431 12 234566667677666666555 489999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ +.|+|+|||++..+. .||+|++|++|+|++.|++++++.++.
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~ 237 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPK 237 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998854 789999999999875 599999999999999999999987754
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 238 ~~~ 240 (375)
T PRK09452 238 NLF 240 (375)
T ss_pred cHH
Confidence 333
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-42 Score=382.19 Aligned_cols=212 Identities=32% Similarity=0.491 Sum_probs=181.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh---HHHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV---KWLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~---~~lR~ 1087 (1236)
|+++|++++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGGR---TVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAELYRLRR 77 (235)
T ss_pred CeEEEEEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhhHHHHhc
Confidence 4789999999743 58999999999999999999999999999999999999999999999999987764 56789
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHhh-------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMAN-------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a~-------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
.++||||++.+|.. |++||+.-... +.+.++.+ |+.........+||||||||++|||||+++|
T Consensus 78 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~ia~al~~~p 155 (235)
T cd03261 78 RMGMLFQSGALFDSLTVFENVAFPLREHTRLSEEEIREIVLEKLEAV--GLRGAEDLYPAELSGGMKKRVALARALALDP 155 (235)
T ss_pred ceEEEccCcccCCCCcHHHHHHHHHhhccCCCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999999986 99999852111 01111111 4444445566789999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+||||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++... ...|.
T Consensus 156 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~ 232 (235)
T cd03261 156 ELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEGTPEELRAS-DDPLV 232 (235)
T ss_pred CEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEecCHHHHcCC-CChhh
Confidence 99999999999999999999999998753 7899999999999875 999999999999999999999864 44443
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-42 Score=391.52 Aligned_cols=217 Identities=28% Similarity=0.509 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----CCHHH
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE----FQLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 458 (1236)
|+++||+|+|+... .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997321 1359999999999999999999999999999999999999999999999999853 33566
Q ss_pred HhcceEEEccCC--CCCchhHHHHHhcCCCC--CCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 459 IREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 459 ~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
+|+++|||+|+| .+|..|+.||+.|+... .+.++ +.++++..++. +........+|||||||
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~----------~~~~~~~~~~LSgGqkq 151 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLA----------DEFWEKSPFELSGGQMR 151 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCC----------hhhccCCcccCCHHHHH
Confidence 788999999998 78889999999987432 22332 33333333332 12334556799999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
|++|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 152 rvaiA~aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~ 231 (288)
T PRK13643 152 RVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDV 231 (288)
T ss_pred HHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998875 4789999999999885 5999999999999999999998
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
..+
T Consensus 232 ~~~ 234 (288)
T PRK13643 232 FQE 234 (288)
T ss_pred HcC
Confidence 754
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-42 Score=388.31 Aligned_cols=214 Identities=30% Similarity=0.511 Sum_probs=186.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+.+|.+. . +|+|+||+|+.||.++|+|||||||||++++|.||.+|++|+|.|||.|++++++++ +.|
T Consensus 3 ~i~l~~v~K~yg~~--~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~~--R~i 77 (338)
T COG3839 3 ELELKNVRKSFGSF--E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPEK--RGI 77 (338)
T ss_pred EEEEeeeEEEcCCc--e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChhH--CCE
Confidence 58999999999753 1 899999999999999999999999999999999999999999999999999999876 789
Q ss_pred EEEcCCCCCChh-hHHHHHH---HHh-----hhchHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIA---EMA-----NANGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~---~~a-----~~~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
|+|+|+..||+- ||+|||+ +.. ....-+.... -+++..+.....+||||||||+||||||+++|++++|
T Consensus 78 amVFQ~yALyPhmtV~~Niaf~Lk~~~~~k~ei~~rV~eva~~L~l~~lL~r~P~~LSGGQrQRVAlaRAlVr~P~v~L~ 157 (338)
T COG3839 78 AMVFQNYALYPHMTVYENIAFGLKLRGVPKAEIDKRVKEVAKLLGLEHLLNRKPLQLSGGQRQRVALARALVRKPKVFLL 157 (338)
T ss_pred EEEeCCccccCCCcHHHHhhhhhhhCCCchHHHHHHHHHHHHHcCChhHHhcCcccCChhhHHHHHHHHHHhcCCCEEEe
Confidence 999999999986 9999996 221 1111111111 1566667788899999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1159 DEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||.|+||+.....+..-|+++.+ +.|+|.|||+...+.. +|||+||.+|+|.+.|+|.|+..++...|-
T Consensus 158 DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~g~p~ely~~P~n~fV 230 (338)
T COG3839 158 DEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQVGTPLELYERPANLFV 230 (338)
T ss_pred cCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeecCChHHHhhCccchhh
Confidence 999999999999999999988653 5799999999998876 999999999999999999999988766553
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=383.91 Aligned_cols=222 Identities=27% Similarity=0.489 Sum_probs=186.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 463 (1236)
++++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999963 469999999999999999999999999999999999999999999999999987776544 5679
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCCCHHHH-------HHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHATKEEI-------QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~-------~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+|++|++.+|.. |++||+.++........+ ........+++.++.+ |++...+....+||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999886 999999886432110000 0000111234455555 666667777889999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999999876 57899999999999865 999999999999999998887653
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=389.55 Aligned_cols=218 Identities=32% Similarity=0.556 Sum_probs=184.7
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC--HHHHh
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ--LKWIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--~~~~r 460 (1236)
|+++||+|+|+... .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++...+ ...++
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 146999999999999999999999999999999999999999999999999997653 35678
Q ss_pred cceEEEccCC--CCCchhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++||||||+| .+|+.|++|||.++.. ..+.++ +.++++.+++. +.+.....+..||||||||+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~---------~~~~~~~~~~~LSgGq~qrv 153 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLD---------YEDYKDKSPFELSGGQKRRV 153 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCC---------chhhccCCcccCCHHHHHHH
Confidence 8999999998 5788999999998632 223333 33444444332 11345566779999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+.+++.
T Consensus 154 ~iAraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~ 233 (287)
T PRK13637 154 AIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVF 233 (287)
T ss_pred HHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999998853 789999999999885 59999999999999999998886
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
+.
T Consensus 234 ~~ 235 (287)
T PRK13637 234 KE 235 (287)
T ss_pred hC
Confidence 54
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=399.90 Aligned_cols=217 Identities=33% Similarity=0.527 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++||+++.+.+. .+++|
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999963 469999999999999999999999999999999999999999999999999976554 35789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC------CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH------ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~------~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+||+|++.+|+. |++|||.|+... .+. +++.++++..++.++. .....+||||||||+
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRv 145 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHLA-----------DRYPAQLSGGQKQRV 145 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHH
Confidence 999999999974 999999987431 122 2344555555554443 344568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+++|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 146 alArAL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~ 225 (353)
T PRK10851 146 ALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVW 225 (353)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998864 6899999999998765 9999999999999999999998
Q ss_pred ccccchh
Q 040099 610 ENPYGAY 616 (1236)
Q Consensus 610 ~~~~~~y 616 (1236)
.++...|
T Consensus 226 ~~p~~~~ 232 (353)
T PRK10851 226 REPATRF 232 (353)
T ss_pred hCccchH
Confidence 7654433
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-42 Score=357.66 Aligned_cols=208 Identities=36% Similarity=0.533 Sum_probs=179.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~lR 1086 (1236)
.|+++||+..||+. ..+|+||||+|++||.|||+||||||||||+++|.|+.+|++|+|.++|.++...+ +..+|
T Consensus 3 ~i~~~nl~k~yp~~--~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr~~r 80 (258)
T COG3638 3 MIEVKNLSKTYPGG--HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELRKLR 80 (258)
T ss_pred eEEEeeeeeecCCC--ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHHHHH
Confidence 48999999999853 57999999999999999999999999999999999999999999999999998887 67788
Q ss_pred cceEEEcCCCCCChh-hHHHHHH--------------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHH
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIA--------------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~--------------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaL 1145 (1236)
++||+|+|++-|-+. |+.+|+. +...+.+-.+.+ |+--..-.+..+|||||+||++|
T Consensus 81 ~~iGmIfQ~~nLv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLerv--gi~~~A~qra~~LSGGQQQRVaI 158 (258)
T COG3638 81 RDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERV--GILDKAYQRASTLSGGQQQRVAI 158 (258)
T ss_pred HhceeEeccCCcccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHc--CcHHHHHHHhccCCcchhHHHHH
Confidence 999999999988765 9999984 122222222211 22222235667899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||.++|+|+|-|||+|+|||.+.+.|++.|++.. .|.|+|+.-|.++..+. ||||+-|++|+|+-.|+++||-+
T Consensus 159 ARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~~el~~ 237 (258)
T COG3638 159 ARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPASELTD 237 (258)
T ss_pred HHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCChhhhhH
Confidence 999999999999999999999999999999999875 46899999999999976 99999999999999999999643
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=362.97 Aligned_cols=202 Identities=35% Similarity=0.524 Sum_probs=169.8
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HH-
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WL- 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~l- 1085 (1236)
++++||+..|.... ...+|+++||+|++||.|||+||||||||||+++|.++..|++|.|.++|.|+..++.+ .+
T Consensus 2 i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~R 81 (226)
T COG1136 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKLR 81 (226)
T ss_pred cEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHHH
Confidence 56899999996432 24699999999999999999999999999999999999999999999999999988743 33
Q ss_pred hcceEEEcCCCCCChh-hHHHHHH---HHhh-----hchHHHhhh-h-chhhhhc-CCCCCCChhHHHHHHHHHHHccCC
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIA---EMAN-----ANGFISGLQ-E-GYDTLVG-ERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~---~~a~-----~~~~i~~lp-~-Gldt~vg-e~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|++||+|+|+..|++. |++||+. ...+ ..+.+..+- . |+..... ....+||||||||+||||||+.+|
T Consensus 82 ~~~iGfvFQ~~nLl~~ltv~ENv~lpl~~~~~~~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARAL~~~P 161 (226)
T COG1136 82 RKKIGFVFQNFNLLPDLTVLENVELPLLIAGKSAGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARALINNP 161 (226)
T ss_pred HHhEEEECccCCCCCCCCHHHHHHhHHHHcCCChhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHHHhcCC
Confidence 5679999999998865 9999985 1111 111222221 1 4543333 567899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEE
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive 1212 (1236)
+|++.||||.|||++|.+.|.+.+++..+ |+|+|+|||+......|||++.|.||++.+
T Consensus 162 ~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 162 KIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYADRVIELKDGKIEE 222 (226)
T ss_pred CeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCCEEEEEeCCeeee
Confidence 99999999999999999999999998853 689999999999999999999999999543
|
|
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=384.11 Aligned_cols=223 Identities=32% Similarity=0.485 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .+.
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTD---FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCC---ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999997 49999999998853 344
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC---CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+|++|+|++|++.+|+.|++|||.++... .. ++++.++++.+++.+.+ ++ .....+.+||||||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l---~~----~~~~~~~~LSgG~~ 156 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEV---KD----KLNTNALSLSGGQQ 156 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhh---HH----HHhCCcccCCHHHH
Confidence 5678899999999999989999999986321 11 23345555555543322 12 23345678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 236 (254)
T PRK14273 157 QRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDEL 236 (254)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999999
Q ss_pred cccccchh
Q 040099 609 LENPYGAY 616 (1236)
Q Consensus 609 ~~~~~~~y 616 (1236)
..++...|
T Consensus 237 ~~~~~~~~ 244 (254)
T PRK14273 237 FFNPKNTK 244 (254)
T ss_pred HhCCCChH
Confidence 86544444
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-42 Score=400.14 Aligned_cols=216 Identities=29% Similarity=0.464 Sum_probs=186.6
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC--cEEEECCeecCCCCHHHH
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA--GEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~--G~i~~~g~~~~~~~~~~~ 459 (1236)
.+.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++.+.+. .
T Consensus 3 ~~~l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGA---NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECC---eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 357999999999963 469999999999999999999999999999999999999999 999999999976655 3
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++.|+||+|++.+|+. ||+|||.|+.. ..+. +++.++++..++.++..+ ...+||||||||+
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~~~-----------~~~~LSgGq~QRv 146 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLVGLGDAAAH-----------LPAQLSGGMQQRI 146 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcCCCchhhC-----------ChhhCCHHHHHHH
Confidence 5689999999999965 99999998642 1222 234555555555544444 4458999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc---CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI---NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 147 aLARAL~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~ 226 (362)
T TIGR03258 147 AIARAIAIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQAL 226 (362)
T ss_pred HHHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 999999999999999999999999999999999988754 6899999999999755 999999999999999999999
Q ss_pred ccccc
Q 040099 609 LENPY 613 (1236)
Q Consensus 609 ~~~~~ 613 (1236)
..++.
T Consensus 227 ~~~p~ 231 (362)
T TIGR03258 227 YDAPA 231 (362)
T ss_pred HhCcC
Confidence 87653
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-42 Score=382.46 Aligned_cols=218 Identities=35% Similarity=0.561 Sum_probs=185.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeecCCC--CHH
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-----AGEVLIDGVNLKEF--QLK 457 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~~--~~~ 457 (1236)
++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +..
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGE---KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECC---eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 789999999963 35999999999999999999999999999999999999998 99999999998753 355
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCCC---CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTH---ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.++++|+|++|++.+|+.|++||+.++... .+. +++.++++..++.+++. ........+|||||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgG~~q 151 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVK-------DRLHDSALGLSGGQQQ 151 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchh-------hHhhCCcccCCHHHHH
Confidence 678899999999999999999999875321 122 23444455555442221 3345566799999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|++|||||+.+|+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 231 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIF 231 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998767899999999998865 9999999999999999999887
Q ss_pred ccc
Q 040099 610 ENP 612 (1236)
Q Consensus 610 ~~~ 612 (1236)
..+
T Consensus 232 ~~~ 234 (247)
T TIGR00972 232 TNP 234 (247)
T ss_pred hCC
Confidence 643
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-42 Score=377.76 Aligned_cols=203 Identities=32% Similarity=0.537 Sum_probs=173.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 461 (1236)
|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999632 24699999999999999999999999999999999999999999999999998766543 3678
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCC--C----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTH--A----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+++|++|++.+|. .|++||+.++... . .++++.++++..++.++..+ ...+||||||||++|
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LSgG~~qrv~l 149 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKVGLEGKAHA-----------LPMQLSGGEQQRVAI 149 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhhhhC-----------ChhhCCHHHHHHHHH
Confidence 9999999999886 5999999875211 1 12345556666655544443 345899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|+|
T Consensus 150 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 150 ARAIVHKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred HHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999875 47899999999999875 999999999975
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-42 Score=381.61 Aligned_cols=211 Identities=33% Similarity=0.517 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .+++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999963 469999999999999999999999999999999999999999999999999876543 256899
Q ss_pred EEccCCCCCc-hhHHHHHhcCCCCC------CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKTHA------TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~~~------~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
||+|++.+|. .|++||+.++.... .. +++.++++.. |++........+||||||||++
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrl~ 146 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV-----------QLDWLADRYPAQLSGGQRQRVA 146 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc-----------CChhhhhcChhhCCHHHHHHHH
Confidence 9999999886 59999999863211 11 1233333333 3444445556689999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++|||||||++||+++.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 147 la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 226 (239)
T cd03296 147 LARALAVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYD 226 (239)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhc
Confidence 99999999999999999999999999999999998853 7899999999998765 99999999999999999998875
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 227 ~ 227 (239)
T cd03296 227 H 227 (239)
T ss_pred C
Confidence 4
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-42 Score=388.80 Aligned_cols=220 Identities=29% Similarity=0.542 Sum_probs=186.8
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHH
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 458 (1236)
++++||+|+|++.. .+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++... +...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (286)
T PRK13646 3 IRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIRP 82 (286)
T ss_pred EEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996322 24699999999999999999999999999999999999999999999999998653 3456
Q ss_pred HhcceEEEccCC--CCCchhHHHHHhcCCCC--CCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCCCCChHHHHHHH
Q 040099 459 IREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 459 ~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgGqkqRia 533 (1236)
+|++||||+|+| .+|..|+.|||.++... .+.++..+. +.+.+..+ |+++ .....+.+||||||||++
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~ 155 (286)
T PRK13646 83 VRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNY-----AHRLLMDL--GFSRDVMSQSPFQMSGGQMRKIA 155 (286)
T ss_pred HHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHH-----HHHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999997 68888999999987422 233333222 22344444 6663 456678899999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 156 laraL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 235 (286)
T PRK13646 156 IVSILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFK 235 (286)
T ss_pred HHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 9999999999999999999999999999999999885 3789999999999885 599999999999999999988876
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 236 ~ 236 (286)
T PRK13646 236 D 236 (286)
T ss_pred C
Confidence 4
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-42 Score=401.50 Aligned_cols=214 Identities=27% Similarity=0.490 Sum_probs=189.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.++.+++...++++|
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 3899999999963 5799999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEccCCCC-CchhHHHHHhcCCCC----------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYGKTH----------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|||+|++.+ |+.|++||+.+++.. ...+++.++++..++.++.. ....+||||||||+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~-----------~~~~~LSgGerQRv 148 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFAD-----------RPVTSLSGGERQRV 148 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhc-----------CChhhCCHHHHHHH
Confidence 999999987 567999999987521 11234666667666655543 33468999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+++|++|||||||++||+.+...+++.|+++. +++|+|++||+++.+. .|||+++|++|++++.|++++++.
T Consensus 149 ~IArAL~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~ 228 (402)
T PRK09536 149 LLARALAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLT 228 (402)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhC
Confidence 99999999999999999999999999999999999886 4789999999999995 599999999999999999999886
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 229 ~ 229 (402)
T PRK09536 229 A 229 (402)
T ss_pred c
Confidence 4
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=383.91 Aligned_cols=218 Identities=31% Similarity=0.534 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 456 (1236)
.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGD---FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECC---eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 5899999999963 469999999999999999999999999999999999975 689999999999864 345
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--CC-C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA-T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+|++|+|++|++.+|+.|++||+.++.. .. . .+++.++++.+++.+++. +..+..+.+||||||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq~ 155 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVK-------DRLHESALGLSGGQQ 155 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCHHHH
Confidence 567889999999999998999999987531 11 1 234555566555543332 234566779999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14242 156 QRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778899999999999865 999999999999999999998
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
...
T Consensus 236 ~~~ 238 (253)
T PRK14242 236 FTR 238 (253)
T ss_pred HcC
Confidence 765
|
|
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-42 Score=382.99 Aligned_cols=222 Identities=32% Similarity=0.545 Sum_probs=189.0
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--C
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--F 454 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 454 (1236)
.+.|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .
T Consensus 11 ~~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGK---FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCC---eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 456999999999963 469999999999999999999999999999999999986 589999999999853 4
Q ss_pred CHHHHhcceEEEccCCCCCchhHHHHHhcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 455 QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT---HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 455 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
+...+|++|+|++|++.+|+.|++||+.++.. ..+. +++.++++..++.+.+ .+..++...+||||
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 160 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEV-------KDKLHQSGYSLSGG 160 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhh-------HHHHhcCCCCCCHH
Confidence 45677889999999999999999999987632 1222 3344555555543222 23456677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+
T Consensus 161 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 240 (260)
T PRK10744 161 QQQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTD 240 (260)
T ss_pred HHHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777899999999999865 9999999999999999999
Q ss_pred ccccccc
Q 040099 607 ELLENPY 613 (1236)
Q Consensus 607 ~l~~~~~ 613 (1236)
++...+.
T Consensus 241 ~~~~~~~ 247 (260)
T PRK10744 241 TIFTKPA 247 (260)
T ss_pred HHHhCCC
Confidence 9876533
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-42 Score=390.17 Aligned_cols=217 Identities=29% Similarity=0.510 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----CCHHH
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE----FQLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~~~~~ 458 (1236)
++++|++|+|++.. ..++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.+||+++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999996422 1469999999999999999999999999999999999999999999999999853 34556
Q ss_pred HhcceEEEccCC--CCCchhHHHHHhcCCCC--CCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 459 IREKIGLVSQEP--VLLSSSIRDNIAYGKTH--ATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 459 ~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.|++||||+|+| .+|+.|++|||.++... .+.++ +.++++.+++.+ ......+.+|||||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~~~~LSgGq~q 152 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELVGLPE----------ELLARSPFELSGGQMR 152 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCCh----------hhhhCCcccCCHHHHH
Confidence 788999999998 68888999999987421 23332 333444443321 2234556789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+ |.|+|+|||+++.+. .||||++|++|++++.|++++
T Consensus 153 rv~lAraL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~ 232 (290)
T PRK13634 153 RVAIAGVLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPRE 232 (290)
T ss_pred HHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 99999999999999999999999999999999999998853 789999999999986 499999999999999999988
Q ss_pred cccc
Q 040099 608 LLEN 611 (1236)
Q Consensus 608 l~~~ 611 (1236)
+.+.
T Consensus 233 ~~~~ 236 (290)
T PRK13634 233 IFAD 236 (290)
T ss_pred HhcC
Confidence 8754
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-42 Score=381.10 Aligned_cols=212 Identities=35% Similarity=0.590 Sum_probs=181.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---HHHHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r~ 461 (1236)
++++|++++|++ ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ...+++
T Consensus 1 l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPN--GKKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCC--ccEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 478999999963 146999999999999999999999999999999999999999999999999998766 456788
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCCC-----------C---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTHA-----------T---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
.++|++|++.+|. .|++||+.++.... . .+++.+ .+..+ |++......+.+|||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~l~~~--~l~~~~~~~~~~LS~ 147 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALA---------ALERV--GLLDKAYQRADQLSG 147 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHH---------HHHHc--CChhhhCCCcccCCH
Confidence 9999999998887 59999998753210 1 112223 33333 444455666779999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHh-hcCeEEEEECCEEEEEe
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g 603 (1236)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+. .||++++|++|++++.|
T Consensus 148 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 148 GQQQRVAIARALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999999999999875 3789999999999997 59999999999999999
Q ss_pred Cccccc
Q 040099 604 THSELL 609 (1236)
Q Consensus 604 ~~~~l~ 609 (1236)
+++++.
T Consensus 228 ~~~~~~ 233 (241)
T cd03256 228 PPAELT 233 (241)
T ss_pred CHHHhh
Confidence 988763
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-42 Score=378.30 Aligned_cols=216 Identities=33% Similarity=0.576 Sum_probs=187.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+...+|+.+
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 79 (241)
T PRK14250 3 EIEFKEVSYSSFGK---EILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDVIDLRRKI 79 (241)
T ss_pred eEEEEeEEEEeCCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcChHHhhhcE
Confidence 48899999999743 589999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCCCCChhhHHHHHHHH--------hhhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1090 GVVSQEPVLFSDTIRANIAEM--------ANANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~~--------a~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
+|+||+|.+|+.|++||+.-. ..+.+++..+ |++ ........+||||||||++||||++++|++|||||
T Consensus 80 ~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrl~la~al~~~p~llllDE 157 (241)
T PRK14250 80 GMVFQQPHLFEGTVKDNIEYGPMLKGEKNVDVEYYLSIV--GLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDE 157 (241)
T ss_pred EEEecCchhchhhHHHHHhcchhhcCcHHHHHHHHHHHc--CCCHHHhhCCcccCCHHHHHHHHHHHHHhcCCCEEEEeC
Confidence 999999999999999998511 1122233322 443 23456778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHHh
Q 040099 1161 ATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1230 (1236)
||++||+.+.+.+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|++++++..+...|.+.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~~~~ 230 (241)
T PRK14250 158 PTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYAKTYDFFTNPQNEVTKL 230 (241)
T ss_pred CcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeCCHHHHhcCCCcHHHHH
Confidence 999999999999999999875 37899999999999875 99999999999999999999987544345443
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-42 Score=374.94 Aligned_cols=203 Identities=35% Similarity=0.555 Sum_probs=172.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCCCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|. .|++||+.++... ... +++.++++..++ +........+||||||||++||||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrl~la~a 144 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELVGL-----------EGLLNRYPHELSGGQQQRVALARA 144 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCC-----------hhhhhcChhhCCHHHHHHHHHHHH
Confidence 9999998886 5999999875321 122 233344444444 434444556899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 145 LAREPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999998765 9999999999998765
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-42 Score=393.10 Aligned_cols=226 Identities=27% Similarity=0.414 Sum_probs=189.2
Q ss_pred cEEEEeEEEECCCCC----------CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC
Q 040099 384 DIELKDVNFSYPARP----------DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~----------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~ 453 (1236)
-|+++|++++|+.+. ..++++||||+|++||++||+|+||||||||+++|+|+++|++|+|+++|.++.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988
Q ss_pred CCHHH---HhcceEEEccCC--CCCc-hhHHHHHhcCC----CCCCHHHH----HHHHHHhccHHHHHhCCCCccccccC
Q 040099 454 FQLKW---IREKIGLVSQEP--VLLS-SSIRDNIAYGK----THATKEEI----QAAAEAANASHFIKNLPQGLDTNVGE 519 (1236)
Q Consensus 454 ~~~~~---~r~~i~~v~Q~~--~l~~-~ti~~ni~~g~----~~~~~~~~----~~~~~~~~~~~~i~~l~~g~~t~~g~ 519 (1236)
.+... +|++|+||+|+| .|++ .||.|||.++. +..+.++. .++++.+++. +.....
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~----------~~~~~~ 157 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLL----------PNLINR 157 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC----------hHHhcC
Confidence 76543 577899999998 4664 69999997632 12333333 3333333331 123455
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEEC
Q 040099 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQ 596 (1236)
Q Consensus 520 ~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~ 596 (1236)
.+.+||||||||++|||||+.+|++||+||||++||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++
T Consensus 158 ~p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~ 237 (331)
T PRK15079 158 YPHEFSGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYL 237 (331)
T ss_pred CcccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEEC
Confidence 6679999999999999999999999999999999999999999999998854 7899999999999976 999999999
Q ss_pred CEEEEEeCcccccccccchhhhh
Q 040099 597 GKIVEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 597 G~i~~~g~~~~l~~~~~~~y~~~ 619 (1236)
|+|++.|+.++++.++...|.+.
T Consensus 238 G~ive~g~~~~i~~~~~~py~~~ 260 (331)
T PRK15079 238 GHAVELGTYDEVYHNPLHPYTKA 260 (331)
T ss_pred CEEEEEcCHHHHHcCCCCHHHHH
Confidence 99999999999988766667663
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-42 Score=371.21 Aligned_cols=211 Identities=34% Similarity=0.595 Sum_probs=184.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc-cCChHHHhcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ-KLQVKWLRQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~-~i~~~~lR~~ 1088 (1236)
-++++|++|+|+++ .++|+|+||+|++||.++|+|+||||||||+++|.|+++|++|.|.+||.+++ +.+...+|++
T Consensus 3 ~i~~~~l~~~y~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~~~~~~~~~~ 80 (235)
T COG1122 3 MIEAENLSFRYPGR--KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSEKSLLELRQK 80 (235)
T ss_pred eEEEEEEEEEcCCC--ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccchhhHHHhhcc
Confidence 47899999999876 47999999999999999999999999999999999999999999999999998 4789999999
Q ss_pred eEEEcCCC--CCChhhHHHHHH---H-----HhhhchHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1089 MGVVSQEP--VLFSDTIRANIA---E-----MANANGFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1089 i~~V~Qdp--~LF~gTIreNL~---~-----~a~~~~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|+|+|+| .+|..||.|.++ + ...+...+.. +. -|+.........+||||||||+|||.+|..+|+||
T Consensus 81 vG~VfQnpd~q~~~~tV~~evafg~~n~g~~~~e~~~rv~~~l~~vgl~~~~~r~p~~LSGGqkqRvaIA~vLa~~P~il 160 (235)
T COG1122 81 VGLVFQNPDDQLFGPTVEDEVAFGLENLGLPREEIEERVAEALELVGLEELLDRPPFNLSGGQKQRVAIAGVLAMGPEIL 160 (235)
T ss_pred eEEEEECcccccccCcHHHHHhhchhhcCCCHHHHHHHHHHHHHHcCchhhccCCccccCCcceeeHHhhHHHHcCCCEE
Confidence 99999999 899999999986 0 0011111110 00 13433455677899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcCC--CeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMVD--RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~~--~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||+||+...+.+.+.++++.+. .|+|+|||+++.+.. |||++||++|+++.+|+|+++.++
T Consensus 161 iLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~p~~i~~~ 229 (235)
T COG1122 161 LLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGDPAEIFND 229 (235)
T ss_pred EEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCCHHHHhhh
Confidence 999999999999999999999998654 699999999999987 999999999999999999999886
|
|
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-42 Score=389.26 Aligned_cols=216 Identities=28% Similarity=0.467 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC---------
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--------- 453 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--------- 453 (1236)
|+++||+|+|++.. +.++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++..
T Consensus 3 i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (305)
T PRK13651 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKEK 82 (305)
T ss_pred EEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceecccccccccccc
Confidence 78999999997421 1369999999999999999999999999999999999999999999999887632
Q ss_pred ---------------CCHHHHhcceEEEccCC--CCCchhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCC
Q 040099 454 ---------------FQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLP 510 (1236)
Q Consensus 454 ---------------~~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~ 510 (1236)
.+...+|++||||+|+| .+|..||+|||.|+.. ..+.++ +.++++..
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~---------- 152 (305)
T PRK13651 83 VLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV---------- 152 (305)
T ss_pred cccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc----------
Confidence 13456788999999986 6788899999998743 223333 33334443
Q ss_pred CCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-h
Q 040099 511 QGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-N 587 (1236)
Q Consensus 511 ~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ 587 (1236)
|++ ........+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+. .
T Consensus 153 -gL~~~~~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~ 231 (305)
T PRK13651 153 -GLDESYLQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEW 231 (305)
T ss_pred -CCChhhhhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHh
Confidence 343 23456667999999999999999999999999999999999999999999998875 4789999999999875 5
Q ss_pred cCeEEEEECCEEEEEeCccccccc
Q 040099 588 ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 588 ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||++|++|++++.|+.+++..+
T Consensus 232 adrv~vl~~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 232 TKRTIFFKDGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999988765
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-42 Score=375.37 Aligned_cols=211 Identities=25% Similarity=0.455 Sum_probs=178.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||++.|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTD-RKAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccc-hHHHhhhEE
Confidence 5789999999632 25699999999999999999999999999999999999999999999999998654 356678899
Q ss_pred EEccCCCCC-chhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLL-SSSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~-~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
||+|++.++ ..|++||+.++.. .... +++.++++..++. ........+||||||||++||||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qrv~la~a 147 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVLGLT-----------DKANKRARTLSGGMKRKLSLAIA 147 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH-----------HHHhChhhhCCHHHHHHHHHHHH
Confidence 999999988 4699999987421 1122 2333444444433 33344456899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
++.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 148 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 148 LIGGPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred HhcCCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999999999999998777999999999999865 999999999999999988765
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9e-42 Score=395.33 Aligned_cols=215 Identities=33% Similarity=0.521 Sum_probs=184.2
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
|+++||+++|+... +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++... +|
T Consensus 2 i~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 81 (343)
T PRK11153 2 IELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKELRKAR 81 (343)
T ss_pred EEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHh
Confidence 68999999997311 246999999999999999999999999999999999999999999999999998877544 57
Q ss_pred cceEEEcCCCCCCh-hhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFS-DTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~-gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++|+||||++.+|. .|++||+.-.. .+.++++.+ |++........+||||||||++|||||+++|
T Consensus 82 ~~ig~v~q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p 159 (343)
T PRK11153 82 RQIGMIFQHFNLLSSRTVFDNVALPLELAGTPKAEIKARVTELLELV--GLSDKADRYPAQLSGGQKQRVAIARALASNP 159 (343)
T ss_pred cCEEEEeCCCccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcCC
Confidence 89999999999886 69999995211 111222222 5555556677889999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...+
T Consensus 160 ~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~ 236 (343)
T PRK11153 160 KVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQGTVSEVFSHPKHPL 236 (343)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHH
Confidence 99999999999999999999999998753 7899999999999876 99999999999999999999987643333
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-42 Score=385.76 Aligned_cols=216 Identities=32% Similarity=0.560 Sum_probs=188.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-++++||+++|+.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999632 34699999999999999999999999999999999999999999999999999887777788899
Q ss_pred EEEccCC--CCCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEP--VLLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+|++|++ .+++.|++|||.++... .+. +++.++++..++.+++.+.| ..||||||||++||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~-----------~~LS~G~~qrv~la 152 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREP-----------HRLSGGQKQRVAIA 152 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCc-----------ccCCHHHHHHHHHH
Confidence 9999998 45677999999986321 122 33555666666666555544 48999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 153 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 153 GVLALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999999998864 7899999999999888999999999999999999888764
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=367.58 Aligned_cols=203 Identities=32% Similarity=0.575 Sum_probs=180.7
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.++++|++++|+.. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|++
T Consensus 5 ~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~ 83 (207)
T cd03369 5 GEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRSS 83 (207)
T ss_pred CeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 569999999999742 2469999999999999999999999999999999999999999999999999988888888889
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|++.+|++|++||+.+... .+.+++.++++ +++++..||||||||++||||++.+|
T Consensus 84 i~~v~q~~~~~~~tv~~~l~~~~~-~~~~~~~~~l~------------------~~~~~~~LS~G~~qrv~laral~~~p 144 (207)
T cd03369 84 LTIIPQDPTLFSGTIRSNLDPFDE-YSDEEIYGALR------------------VSEGGLNLSQGQRQLLCLARALLKRP 144 (207)
T ss_pred EEEEecCCcccCccHHHHhcccCC-CCHHHHHHHhh------------------ccCCCCcCCHHHHHHHHHHHHHhhCC
Confidence 999999999999999999987543 33444433332 34567799999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
+++||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 145 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 145 RVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 999999999999999999999999988778999999999999878999999999999988753
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-42 Score=380.13 Aligned_cols=212 Identities=33% Similarity=0.559 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 461 (1236)
|+++||+++|+. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 689999999962 3469999999999999999999999999999999999999999999999999877654 34678
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCCC-----------C---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTHA-----------T---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
+++|++|++.+|. .|++||+.++.... . .+++.+++ ..+ |++......+.+|||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~--~l~~~~~~~~~~LSg 148 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSAL---------ERV--GLADKAYQRADQLSG 148 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHH---------HHc--CcHhhhcCCcccCCH
Confidence 8999999998886 59999998764211 1 11233333 333 444445566779999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|||||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 149 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 149 GQQQRVAIARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998753 7899999999999854 9999999999999999
Q ss_pred Cccccc
Q 040099 604 THSELL 609 (1236)
Q Consensus 604 ~~~~l~ 609 (1236)
+++++.
T Consensus 229 ~~~~~~ 234 (243)
T TIGR02315 229 APSELD 234 (243)
T ss_pred CHHHhC
Confidence 988863
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=378.69 Aligned_cols=239 Identities=26% Similarity=0.425 Sum_probs=204.1
Q ss_pred HHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 356 FKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 356 ~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+.+.+++..+++.++. .+.+...+.|+++|+++.. +++|+|+||+|++||+++|+||||||||||+++|+|
T Consensus 15 ~~~~~~~~~~~~~~~~----~~~~~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~G 85 (282)
T cd03291 15 EGFGELLEKAKQENND----RKHSSDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILG 85 (282)
T ss_pred HHHHHHHhcccccccc----cccCCCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhC
Confidence 4556667665543321 2233445679999999952 359999999999999999999999999999999999
Q ss_pred CCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc
Q 040099 436 FYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT 515 (1236)
Q Consensus 436 ~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t 515 (1236)
+++|++|+|.++| .|+|++|++.+|+.|++||+.++... ...++.++++.+++.+.+..+|.++++
T Consensus 86 l~~p~~G~I~i~g-------------~i~yv~q~~~l~~~tv~enl~~~~~~-~~~~~~~~l~~~~l~~~l~~~~~~~~~ 151 (282)
T cd03291 86 ELEPSEGKIKHSG-------------RISFSSQFSWIMPGTIKENIIFGVSY-DEYRYKSVVKACQLEEDITKFPEKDNT 151 (282)
T ss_pred CCCCCCcEEEECC-------------EEEEEeCcccccccCHHHHhhccccc-CHHHHHHHHHHhCCHHHHHhccccccc
Confidence 9999999999998 49999999999999999999986432 344566777778888999999999999
Q ss_pred cccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 516 NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL-DRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 516 ~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
.+++++.+||||||||++|||||+.+|++|||||||++||+.+...+.+.+ +++.+++|+|++||+++.+..||++++|
T Consensus 152 ~~~~~~~~LSgGq~qrv~lAraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l 231 (282)
T cd03291 152 VLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILIL 231 (282)
T ss_pred eecCCCCcCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEE
Confidence 999999999999999999999999999999999999999999999888754 5666688999999999999889999999
Q ss_pred ECCEEEEEeCcccccccccchhhh
Q 040099 595 QQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 595 ~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
++|++++.|+++++... ...|.+
T Consensus 232 ~~G~i~~~g~~~~~~~~-~~~~~~ 254 (282)
T cd03291 232 HEGSSYFYGTFSELQSL-RPDFSS 254 (282)
T ss_pred ECCEEEEECCHHHHHhc-chHHHH
Confidence 99999999999998764 334443
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-42 Score=386.86 Aligned_cols=218 Identities=35% Similarity=0.532 Sum_probs=183.6
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----hc
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI----RE 461 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~ 461 (1236)
.++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~---~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTG---QTVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcC---CceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 5678888885 3469999999999999999999999999999999999999999999999999987665443 46
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+++|++|++.+|. .|++||+.++.. ... .+++.++++..++.+++.+.| .+||||||||++|
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~Gq~qrv~l 171 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELVGLEGWEHKYP-----------DELSGGMQQRVGL 171 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhCCc-----------ccCCHHHHHHHHH
Confidence 7999999999885 599999987521 111 234555566666655554444 5899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||+++|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++++.
T Consensus 172 Aral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 251 (269)
T cd03294 172 ARALAVDPDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTN 251 (269)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999998753 7899999999998865 999999999999999999999865
Q ss_pred ccchhh
Q 040099 612 PYGAYN 617 (1236)
Q Consensus 612 ~~~~y~ 617 (1236)
+...|.
T Consensus 252 ~~~~~~ 257 (269)
T cd03294 252 PANDYV 257 (269)
T ss_pred cCcHHH
Confidence 444444
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-42 Score=399.23 Aligned_cols=214 Identities=29% Similarity=0.487 Sum_probs=184.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999776543 5689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+||+|++.+|+. |++|||.|+.. ..+. +++.++++..++.++. .....+||||||||++|||
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~~-----------~~~~~~LSgGq~QRvaLAr 146 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVLQLAHLL-----------DRKPKALSGGQRQRVAIGR 146 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHcCChhhh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999965 99999998742 1222 2344555555554443 4445689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.+++.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 147 aL~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~ 226 (369)
T PRK11000 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (369)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998753 7899999999998765 99999999999999999999877643
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-42 Score=383.52 Aligned_cols=220 Identities=33% Similarity=0.518 Sum_probs=187.8
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--C
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--F 454 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 454 (1236)
.+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 89999999999864 3
Q ss_pred CHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 455 QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 455 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
+...+|+.++|++|++.+|+.|+.||+.++.. .. + .+++.++++..++.+++. +..+..+.+|||
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSg 166 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVK-------DRLHEPGTGLSG 166 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhh-------HHhhCCcccCCH
Confidence 45567889999999999998899999987531 10 1 233455555555543321 234556778999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCc
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~ 605 (1236)
|||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 167 Gq~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~ 246 (267)
T PRK14235 167 GQQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDT 246 (267)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCH
Confidence 9999999999999999999999999999999999999999998777899999999999865 999999999999999999
Q ss_pred cccccc
Q 040099 606 SELLEN 611 (1236)
Q Consensus 606 ~~l~~~ 611 (1236)
+++..+
T Consensus 247 ~~~~~~ 252 (267)
T PRK14235 247 EKMFTN 252 (267)
T ss_pred HHHHhC
Confidence 988754
|
|
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=376.78 Aligned_cols=216 Identities=37% Similarity=0.574 Sum_probs=182.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 460 (1236)
|+++|++++|+++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ..+
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999996421 12699999999999999999999999999999999999999999999999998776543 347
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+.++|++|++.+|. .|++||+.++.. .... +++.++++.. |++........+||||||||++
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~ 150 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV-----------GLEDKADAYPAQLSGGQKQRVG 150 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CChhhhhcChhhCCHHHHHHHH
Confidence 78999999999997 599999987532 1121 2233344444 4444444556789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
||||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 151 la~al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 230 (233)
T cd03258 151 IARALANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFA 230 (233)
T ss_pred HHHHHhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhc
Confidence 99999999999999999999999999999999998753 7899999999999865 99999999999999999888764
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
+
T Consensus 231 ~ 231 (233)
T cd03258 231 N 231 (233)
T ss_pred C
Confidence 3
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-42 Score=376.02 Aligned_cols=206 Identities=35% Similarity=0.564 Sum_probs=176.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhccc-----CCCCcEEEECCeecccCC--hH
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY-----DPSSGHITLDGVEIQKLQ--VK 1083 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-----~~~~G~I~idG~di~~i~--~~ 1083 (1236)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|++ +|++|+|.++|.++.+.+ ..
T Consensus 1 i~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~~ 77 (227)
T cd03260 1 IELRDLNVYYGDK---HALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVDVL 77 (227)
T ss_pred CEEEEEEEEcCCc---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchHHH
Confidence 5789999999753 5899999999999999999999999999999999999 999999999999998776 56
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHHh-hhh-chhhhhcCC--CCCCChhHHHHHHHHHHHc
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFISG-LQE-GYDTLVGER--GVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~~-lp~-Gldt~vge~--G~~LSGGQrQRlaLARALl 1150 (1236)
.+|++++|+||++.+|..|++||+.-.... .+.+.. +.. |++...... +.+||||||||++|||||+
T Consensus 78 ~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~~qrv~la~al~ 157 (227)
T cd03260 78 ELRRRVGMVFQKPNPFPGSIYDNVAYGLRLHGIKLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALA 157 (227)
T ss_pred HHHhhEEEEecCchhccccHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCChHHhccCCcccCCHHHHHHHHHHHHHh
Confidence 788999999999999988999998521110 111111 111 444444444 5899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
++|++|||||||++||+++.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 158 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 227 (227)
T cd03260 158 NEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGPTEQI 227 (227)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecCcccC
Confidence 999999999999999999999999999998656899999999999865 999999999999999998764
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=375.56 Aligned_cols=216 Identities=29% Similarity=0.488 Sum_probs=180.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 463 (1236)
|+++||+++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++...+.... ++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGK---SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCC---eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 478999999963 469999999999999999999999999999999999999999999999999987776544 6779
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
+|++|++.+|.. |++||+.++.......+..+. +.+.+..++ +++......+.+||||||||++|||||+.+|
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~-----~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p 151 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKAR-----LERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRP 151 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHH-----HHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCC
Confidence 999999999886 999999986432211111111 112222221 2333445666789999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 152 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 220 (222)
T cd03224 152 KLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELL 220 (222)
T ss_pred CEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHh
Confidence 9999999999999999999999999875 47899999999998765 9999999999999999887764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=372.61 Aligned_cols=205 Identities=43% Similarity=0.741 Sum_probs=185.1
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|+++++|++++|+.+ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++...+...+|+.
T Consensus 1 ~~l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 79 (220)
T cd03245 1 GRIEFRNVSFSYPNQ-EIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDPADLRRN 79 (220)
T ss_pred CeEEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCHHHHHhh
Confidence 468999999999743 2458999999999999999999999999999999999999999999999999988887788899
Q ss_pred eEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++|++|+|.+|..|++||+. +..++.+.+..+|.|++|.+.....+||||||||++||||++.+|
T Consensus 80 i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~LSgG~~qrl~la~al~~~p 159 (220)
T cd03245 80 IGYVPQDVTLFYGTLRDNITLGAPLADDERILRAAELAGVTDFVNKHPNGLDLQIGERGRGLSGGQRQAVALARALLNDP 159 (220)
T ss_pred EEEeCCCCccccchHHHHhhcCCCCCCHHHHHHHHHHcCcHHHHHhccccccceecCCCccCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999984 122334455667778888888888899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
++|||||||++||+.+...+.+.|++..+++|+|++||+++.++.||+|++|++|++++.|
T Consensus 160 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~d~v~~l~~g~i~~~~ 220 (220)
T cd03245 160 PILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLLDLVDRIIVMDSGRIVADG 220 (220)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHhCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999987668999999999988889999999999998765
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=384.04 Aligned_cols=217 Identities=32% Similarity=0.522 Sum_probs=187.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++||+++|++....++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999743234699999999999999999999999999999999999999999999999999877777788899
Q ss_pred EEEccCCC--CCchhHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEPV--LLSSSIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+|++|++. ++..|+.|||.++.. ..+.+ ++.++++.+++.++..+ ....||||||||++||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~G~~qrv~lA 152 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTR-----------EPARLSGGQKQRVAVA 152 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhC-----------CcccCCHHHHHHHHHH
Confidence 99999983 667899999987532 22332 34455555565554433 4468999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|++++++..
T Consensus 153 raL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 153 GIIALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999998854 7899999999999988999999999999999999998764
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=385.08 Aligned_cols=215 Identities=27% Similarity=0.513 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++|++|+|++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999962 346999999999999999999999999999999999999999999999999984 334566888
Q ss_pred ceEEEccCC--CCCchhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEP--VLLSSSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
.|+|++|++ .+|+.|++||+.++.. ..+. +++.++++..++.+ .....+.+||||||||++
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~-----------~~~~~~~~LS~G~~qrl~ 151 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEH-----------LKDKPTHCLSFGQKKRVA 151 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChh-----------hhhCCcccCCHHHHHHHH
Confidence 999999998 5788899999987532 1222 23444444444433 344556799999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ |+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 152 laraL~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~ 231 (283)
T PRK13636 152 IAGVLVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 231 (283)
T ss_pred HHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999998854 789999999999987 599999999999999999998876
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 232 ~ 232 (283)
T PRK13636 232 E 232 (283)
T ss_pred C
Confidence 4
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=375.37 Aligned_cols=210 Identities=27% Similarity=0.465 Sum_probs=178.0
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---H
Q 040099 384 DIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---I 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 459 (1236)
-++++||+|+|+++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997422 146999999999999999999999999999999999999999999999999998877543 3
Q ss_pred h-cceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 460 R-EKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 460 r-~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
| +.++|++|++.+|+. |++||+.++.. .... +++.++++.. |++........+||||||||
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgG~~qr 153 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV-----------GLEHRANHRPSELSGGERQR 153 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHH
Confidence 3 679999999998875 99999987421 1122 2233333333 45555556667899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
++||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..+|++++|++|+|++.|+
T Consensus 154 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 154 VAIARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999999999999874 4789999999999998889999999999998775
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-42 Score=370.42 Aligned_cols=199 Identities=28% Similarity=0.523 Sum_probs=171.8
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++|++++|++. +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ...+++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 468999999631 469999999999999999999999999999999999999999999999998754 456778999
Q ss_pred EccCC--CCCchhHHHHHhcCCCCC--CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 466 VSQEP--VLLSSSIRDNIAYGKTHA--TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 466 v~Q~~--~l~~~ti~~ni~~g~~~~--~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
++|++ .++..|++||+.++.+.. ..+++.++++..++.++..+.| ..||||||||++|||||+.+
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDLDLYALKERHP-----------LSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHcCCchhcCCCc-----------hhCCHHHHHHHHHHHHHHhC
Confidence 99997 467789999999864322 2345666777776655544443 48999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999874 57899999999999875 9999999999975
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=378.21 Aligned_cols=218 Identities=36% Similarity=0.570 Sum_probs=183.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4789999999631 46999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCCCc-hhHHHHHhcCCCC--CCHHHHHHHHHHhccHHHHHhCCCCccc--cccCCCCCCChHHHHHHHHHHHhc
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDT--NVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t--~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
|++|++.+|. .|++||+.++... .+.++.. ..+.+.+..+ |++. ...+.+.+||||||||++||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIR-----ERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHH-----HHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 9999999886 5999999875321 1111111 1122333433 4443 455667899999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 99999999999999999999999999998853 7899999999998754 999999999999999999888654
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=378.98 Aligned_cols=219 Identities=33% Similarity=0.516 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCCCHHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~~~~ 458 (1236)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQ---VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECC---eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 4899999999963 4699999999999999999999999999999999999974 7999999999998877778
Q ss_pred HhcceEEEccCCCCC-chhHHHHHhcCCCC----CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 459 IREKIGLVSQEPVLL-SSSIRDNIAYGKTH----AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
+|+.|+|++|++.+| ..|++||+.++... .. .+++.++++..++.+.+ +........+||||||
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~ 152 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQLWDEV-------KDRLDAPAGKLSGGQQ 152 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCCcccCCHHHH
Confidence 889999999999765 56999999875321 11 13344555555543322 1233455678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14247 153 QRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREV 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHH
Confidence 999999999999999999999999999999999999999877899999999999986 5999999999999999999998
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
...+
T Consensus 233 ~~~~ 236 (250)
T PRK14247 233 FTNP 236 (250)
T ss_pred HcCC
Confidence 7653
|
|
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=383.17 Aligned_cols=211 Identities=28% Similarity=0.459 Sum_probs=184.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13650 4 IIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENVWDIRHKI 83 (279)
T ss_pred eEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHHhhc
Confidence 38899999999742223599999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCC--CCChhhHHHHHHHHh---h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEP--VLFSDTIRANIAEMA---N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~gTIreNL~~~a---~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+||+|+| .++..||+|||.-.. + +.+.++.+ |++........+||||||||++|||||+++|++
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qrv~lAral~~~p~l 161 (279)
T PRK13650 84 GMVFQNPDNQFVGATVEDDVAFGLENKGIPHEEMKERVNEALELV--GMQDFKEREPARLSGGQKQRVAIAGAVAMRPKI 161 (279)
T ss_pred eEEEcChHHhcccccHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC--CCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998 466779999995111 1 11112211 566566777789999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 162 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13650 162 IILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVALSDRVLVMKNGQVESTSTPRELFSR 230 (279)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999998753 7899999999999988999999999999999999998765
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-42 Score=336.92 Aligned_cols=204 Identities=34% Similarity=0.508 Sum_probs=171.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|.+++|.|+|..-| =.++++|++||+|||+||||||||||++++.||..|.+|+|+|+|+|....++. ++-++
T Consensus 2 l~L~~V~~~y~~~~-----~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~--~RPVS 74 (231)
T COG3840 2 LALDDVRFSYGHLP-----MRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA--ERPVS 74 (231)
T ss_pred ccccceEEeeCcce-----EEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc--cCChh
Confidence 56789999997543 367999999999999999999999999999999999999999999999887764 46799
Q ss_pred EEcCCCCCChh-hHHHHHH------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIA------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+++||..||.- ||++|+. +.-.+.+... .-|+......-...||||||||+||||+|+|+-|||+
T Consensus 75 mlFQEnNLFaHLtV~qNigLGl~P~LkL~a~~r~~v~~aa~--~vGl~~~~~RLP~~LSGGqRQRvALARclvR~~PilL 152 (231)
T COG3840 75 MLFQENNLFAHLTVAQNIGLGLSPGLKLNAEQREKVEAAAA--QVGLAGFLKRLPGELSGGQRQRVALARCLVREQPILL 152 (231)
T ss_pred hhhhccccchhhhhhhhhcccCCcccccCHHHHHHHHHHHH--HhChhhHhhhCccccCchHHHHHHHHHHHhccCCeEE
Confidence 99999999975 9999984 1100111100 0123322333345799999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||||.|+|||.-..++...+.+.+ ++.|+++|||.++.++. +|+++++++|||+++|.-+++++.+
T Consensus 153 LDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~~~~~~~~~ 221 (231)
T COG3840 153 LDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGSTQELLSGK 221 (231)
T ss_pred ecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeeccHHHHhccC
Confidence 999999999999999999998876 46799999999999866 9999999999999999999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-41 Score=380.51 Aligned_cols=218 Identities=31% Similarity=0.480 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecC--CCCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLK--EFQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~--~~~~ 456 (1236)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++. +.+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGS---NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCC---eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999987 4999999999986 4455
Q ss_pred HHHhcceEEEccCCCCCch-hHHHHHhcCCC--C--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 457 KWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--H--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
..+|++++|++|++.+|.. |++||+.++.. . ... +++.++++..++.+++ .........+||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 153 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEV-------KDRLNDYPSNLSGG 153 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccch-------hhhhccChhhCCHH
Confidence 5678899999999999975 99999987531 1 112 2344444444443222 12345567789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 154 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 233 (253)
T PRK14267 154 QRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTR 233 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998777999999999999865 9999999999999999999
Q ss_pred ccccc
Q 040099 607 ELLEN 611 (1236)
Q Consensus 607 ~l~~~ 611 (1236)
++...
T Consensus 234 ~~~~~ 238 (253)
T PRK14267 234 KVFEN 238 (253)
T ss_pred HHHhC
Confidence 98754
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=371.87 Aligned_cols=207 Identities=27% Similarity=0.414 Sum_probs=179.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH-hcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-RQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l-R~~i 1089 (1236)
|+++||+++|+.. ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (222)
T cd03224 1 LEVENLNAGYGKS---QILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPHERARAGI 77 (222)
T ss_pred CEEeeEEeecCCe---eEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHHHHHhcCe
Confidence 5789999999743 58999999999999999999999999999999999999999999999999988776554 6789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh----------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN----------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~----------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+|+||++.+|.+ |++||+..... +.++++.++ +++.........||||||||++|||||+++|++|||
T Consensus 78 ~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 156 (222)
T cd03224 78 GYVPEGRRIFPELTVEENLLLGAYARRRAKRKARLERVYELFP-RLKERRKQLAGTLSGGEQQMLAIARALMSRPKLLLL 156 (222)
T ss_pred EEeccccccCCCCcHHHHHHHHhhhcCchhHHHHHHHHHHHHH-hhhhhhhCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999986 99999952111 122233221 345555677788999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1159 DEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 157 DEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 221 (222)
T cd03224 157 DEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEGTAAELLA 221 (222)
T ss_pred CCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeCCHHHHhc
Confidence 99999999999999999999875 47899999999999865 99999999999999999988764
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=340.00 Aligned_cols=204 Identities=34% Similarity=0.548 Sum_probs=171.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHHHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~lR~ 1087 (1236)
|+|+||+.+|+.. +++|+||||+|++||.+-|+|||||||||++++|++...|++|+|+++|.|++.+. .-.||+
T Consensus 2 I~f~~V~k~Y~~g--~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~iP~LRR 79 (223)
T COG2884 2 IRFENVSKAYPGG--REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREIPFLRR 79 (223)
T ss_pred eeehhhhhhcCCC--chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeecccccccccchhhh
Confidence 7999999999975 46999999999999999999999999999999999999999999999999998775 456899
Q ss_pred ceEEEcCCCCCCh-hhHHHHHH---HHhhhc--hHHHhhhh-----chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIA---EMANAN--GFISGLQE-----GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~---~~a~~~--~~i~~lp~-----Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|+||..|.. -|+.||++ +..+.. +.=...++ ||......-...|||||+||+|||||++.+|++|
T Consensus 80 ~IGvVFQD~rLL~~~tvyeNVA~pL~v~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vL 159 (223)
T COG2884 80 QIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVL 159 (223)
T ss_pred eeeeEeeeccccccchHhhhhhhhhhccCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeE
Confidence 9999999998775 59999985 111110 00001111 3333333445789999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhc-CEEEEEeCCEEEEecCh
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNA-HLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~a-D~I~Vl~~G~Ive~Gt~ 1216 (1236)
|-||||-|||+++...|++.+.+.. .|.||++.||+.+.+..+ -|++.+++|+++....+
T Consensus 160 lADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 160 LADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred eecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 9999999999999999999998864 578999999999999875 67999999999987654
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-41 Score=397.37 Aligned_cols=206 Identities=36% Similarity=0.547 Sum_probs=176.0
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----hcceEEEccCCCCCc-h
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI----REKIGLVSQEPVLLS-S 475 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~----r~~i~~v~Q~~~l~~-~ 475 (1236)
.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.+.+...+ +++++||+|++.+|+ .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999988776543 457999999999986 4
Q ss_pred hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeC
Q 040099 476 SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549 (1236)
Q Consensus 476 ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE 549 (1236)
|++||+.++.. ... .+++.++++..++.++..+ ...+||||||||++|||||+.+|++|||||
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~gL~~~~~~-----------~~~~LSgGq~QRv~LArAL~~~P~iLLLDE 190 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQVGLENYAHS-----------YPDELSGGMRQRVGLARALAINPDILLMDE 190 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCChhhhc-----------CcccCCHHHHHHHHHHHHHhcCCCEEEEEC
Confidence 99999998632 112 2344555555555554444 445899999999999999999999999999
Q ss_pred cCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 550 ATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 550 ~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
|||+||+.+...+++.|.++. .++|+|++||+++.+.. ||+|++|++|++++.|++++++.++...|.
T Consensus 191 Pts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~v 261 (400)
T PRK10070 191 AFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDYV 261 (400)
T ss_pred CCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHHH
Confidence 999999999999999999874 37899999999999864 999999999999999999999876544443
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-42 Score=372.94 Aligned_cols=208 Identities=38% Similarity=0.571 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH----HH
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK----WI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~ 459 (1236)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ..
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999996321 14699999999999999999999999999999999999999999999999998876643 24
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+++++|++|++.+|.. |++||+.++... ...++.. ..+.+.+..+ |++........+||||||||++|||
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~ 153 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERR-----ERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIAR 153 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHH-----HHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHH
Confidence 5789999999999876 999999986421 1111111 1122333333 4554455566799999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEE
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKI 599 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i 599 (1236)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 154 al~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 154 ALANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred HHccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 99999999999999999999999999999998864 7899999999999888999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=376.15 Aligned_cols=211 Identities=30% Similarity=0.479 Sum_probs=183.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC---CCCcEEEECCeecccCChHHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD---PSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~---~~~G~I~idG~di~~i~~~~lR 1086 (1236)
.|+++||+++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|++||.++.+.+...+|
T Consensus 2 ~~~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~~~~~ 78 (246)
T PRK14269 2 IAKTTNLNLFYGK---KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDVVALR 78 (246)
T ss_pred ceeeeeeEEEECC---EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCHHHHh
Confidence 4789999999974 358999999999999999999999999999999999985 6899999999999988888889
Q ss_pred cceEEEcCCCCCChhhHHHHHHHHhhhc----------hHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIAEMANAN----------GFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~~~a~~~----------~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
+.++|+||+|.+|+.|++||+.-....+ +.+..+-+ |+ .....+.+.+||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~laral~ 158 (246)
T PRK14269 79 KNVGMVFQQPNVFVKSIYENISYAPKLHGMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRLCIARALA 158 (246)
T ss_pred hhEEEEecCCccccccHHHHhhhHHhhcCcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHHHHHHHHh
Confidence 9999999999999999999985211110 11111111 33 23456778899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++...+
T Consensus 159 ~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 232 (246)
T PRK14269 159 IKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFGESKEFFENP 232 (246)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEECCHHHHHhCC
Confidence 99999999999999999999999999998877899999999999886 59999999999999999999998653
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-41 Score=369.58 Aligned_cols=203 Identities=28% Similarity=0.495 Sum_probs=175.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++|+|++ .++|+|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|.++.+.+ ..++++++
T Consensus 1 i~~~~~~~~~~~---~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGK---KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECC---EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 578999999963 46999999999999 99999999999999999999999999999999999987766 66788999
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|.. |++||+.+... ..+ .+++.++++..++.++.+ ....+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~a 144 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELVNLGDRAK-----------KKIGSLSGGMRRRVGIAQA 144 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCHHHHh-----------CchhhCCHHHHHHHHHHHH
Confidence 99999999876 99999987421 111 234555566666554433 3345899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 145 LVGDPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999999999998777999999999999865 9999999999998765
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=370.46 Aligned_cols=207 Identities=25% Similarity=0.479 Sum_probs=175.1
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 385 IELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
|+++||+++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ...++|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999974211 169999999999999999999999999999999999999999999999999875 345678899
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+|++|++.+|.. |++||+.+... .... +++.++++.. |++......+.+||||||||++|||
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LS~G~~qrv~lar 149 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL-----------GMEELLDRRVGGFSTGMRQKVAIAR 149 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCHHHHhhhhhhcCHHHHHHHHHHH
Confidence 999999999885 99999986421 1122 2333344444 4444455566789999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 150 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 150 ALVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred HHhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999999999999885 47899999999998865 9999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=365.17 Aligned_cols=200 Identities=37% Similarity=0.611 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 385 IELKDVNFSYPARPD--EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
++++||+++|++..+ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999964211 3699999999999999999999999999999999999999999999998 6
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+|++|+|.+|+.|++||+.++.. ..+++..++++.+++.+++..+|.|+++.+++++.+||||||||++|||||+.+|
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p 146 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKP-FDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCC-cCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 999999999999999999999754 3456677888888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHH-HHHHHc-cCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 543 RILLLDEATSALDSESGRMVQE-ALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~-~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
+++||||||++||+++.+.+.+ .++++. +++|+|++||+++.+..||++++|++|+
T Consensus 147 ~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 147 DIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred CEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 9999999999999999998887 456553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=383.28 Aligned_cols=213 Identities=30% Similarity=0.525 Sum_probs=182.0
Q ss_pred cEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC----ChH
Q 040099 1010 EVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL----QVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i----~~~ 1083 (1236)
.|+++||+++|++.+ ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +..
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997432 13699999999999999999999999999999999999999999999999999653 346
Q ss_pred HHhcceEEEcCCC--CCChhhHHHHHHHHh---h-----hchHHHhh--hhchhh-hhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1084 WLRQQMGVVSQEP--VLFSDTIRANIAEMA---N-----ANGFISGL--QEGYDT-LVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp--~LF~gTIreNL~~~a---~-----~~~~i~~l--p~Gldt-~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
.+|++|+||||+| .+|..|++|||.-.. + ..+.+..+ .-|+++ .....+.+||||||||++|||||+
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~laraL~ 161 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNFKMNLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVSILA 161 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHH
Confidence 7899999999998 688899999995110 1 11112211 126764 455678899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
.+|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||+|++|++|+|++.|+++++.++
T Consensus 162 ~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 236 (286)
T PRK13646 162 MNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTSPKELFKD 236 (286)
T ss_pred hCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999874 3789999999999985 5999999999999999999998774
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=395.32 Aligned_cols=217 Identities=32% Similarity=0.525 Sum_probs=185.7
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.+.+. .+++
T Consensus 18 ~~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 92 (377)
T PRK11607 18 PLLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRP 92 (377)
T ss_pred ceEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCC
Confidence 35999999999963 469999999999999999999999999999999999999999999999999987654 4678
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||||+|++.+|+. ||+|||.|+.. ..+. +++.++++..++.++. .....+||||||||++||
T Consensus 93 ig~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l~L~~~~-----------~~~~~~LSgGq~QRVaLA 161 (377)
T PRK11607 93 INMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLVHMQEFA-----------KRKPHQLSGGQRQRVALA 161 (377)
T ss_pred EEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHH
Confidence 9999999999975 99999998743 1222 2344455555554443 444458999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
|||+.+|++||||||||+||+.+...+.+.|+++. .+.|+|+|||+++.+. .||+|++|++|++++.|+++++..++
T Consensus 162 RAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p 241 (377)
T PRK11607 162 RSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHP 241 (377)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCC
Confidence 99999999999999999999999999998888774 3789999999999875 59999999999999999999998775
Q ss_pred cch
Q 040099 613 YGA 615 (1236)
Q Consensus 613 ~~~ 615 (1236)
...
T Consensus 242 ~~~ 244 (377)
T PRK11607 242 TTR 244 (377)
T ss_pred ccH
Confidence 433
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=370.83 Aligned_cols=209 Identities=24% Similarity=0.430 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||++++||++||+||||||||||+++|+|+++|++|+|.++|.++... ...++++++
T Consensus 1 i~~~~~~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGD---FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECC---EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999988653 356678899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.++.. |++||+.++.. ... ++++.++++..++.++.. ....+||||||||++||||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qr~~la~a 145 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFVGLLEAAD-----------RLVKTYSGGMRRRLEIARS 145 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHhh-----------CChhhCCHHHHHHHHHHHH
Confidence 99999988875 99999987421 111 234455555555554433 3345899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
++.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 146 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 146 LVHRPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred HhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999999999999988753 6899999999999865 999999999999999887664
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=375.34 Aligned_cols=207 Identities=28% Similarity=0.518 Sum_probs=180.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH-hcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-RQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l-R~~i 1089 (1236)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+ |+++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (236)
T cd03219 1 LEVRGLTKRFGG---LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPPHEIARLGI 77 (236)
T ss_pred CeeeeeEEEECC---EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCHHHHHhcCE
Confidence 468999999974 358999999999999999999999999999999999999999999999999988776554 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh----------------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN----------------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~----------------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
+|+||++.+|.+ |++||+.-... +.++++.+ |++.........||||||||++||
T Consensus 78 ~~v~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 155 (236)
T cd03219 78 GRTFQIPRLFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERV--GLADLADRPAGELSYGQQRRLEIA 155 (236)
T ss_pred EEEecccccccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHc--CccchhhCChhhCCHHHHHHHHHH
Confidence 999999999987 99999852111 11222222 565566677789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||+++|++|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 156 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 233 (236)
T cd03219 156 RALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEGTPDEVRNN 233 (236)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeecCHHHhccC
Confidence 99999999999999999999999999999999875 57899999999999966 999999999999999999998754
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=373.34 Aligned_cols=205 Identities=54% Similarity=0.837 Sum_probs=185.9
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l 1085 (1236)
...+.++++|++++|+++...++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+...+
T Consensus 7 ~~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~ 86 (226)
T cd03248 7 HLKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEHKYL 86 (226)
T ss_pred CcCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCHHHH
Confidence 35678999999999975423469999999999999999999999999999999999999999999999999988888888
Q ss_pred hcceEEEcCCCCCChhhHHHHHHH---------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIAE---------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~~---------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
|++++|++|+|.+|++|++||+.- ...+.+++..+|.|+++.+.+...+||||||||++|||||+
T Consensus 87 ~~~i~~~~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgG~~qrv~laral~ 166 (226)
T cd03248 87 HSKVSLVGQEPVLFARSLQDNIAYGLQSCSFECVKEAAQKAHAHSFISELASGYDTEVGEKGSQLSGGQKQRVAIARALI 166 (226)
T ss_pred HhhEEEEecccHHHhhhHHHHhccccCCCCHHHHHHHHHHcCcHHHHHhccccccchhhcCCCcCCHHHHHHHHHHHHHh
Confidence 899999999999999999999951 01234566777778998899999999999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
++|++|||||||++||+++...+.+.|+++.+++|+|+|||+++.+..||+|++|++|++
T Consensus 167 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~i~~l~~g~i 226 (226)
T cd03248 167 RNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVERADQILVLDGGRI 226 (226)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999998777899999999999988999999999974
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=378.33 Aligned_cols=219 Identities=32% Similarity=0.537 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---------
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ--------- 455 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------- 455 (1236)
|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++
T Consensus 1 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGI---LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCC---eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 478999999963 46999999999999999999999999999999999999999999999999986543
Q ss_pred ----HHHHhcceEEEccCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 456 ----LKWIREKIGLVSQEPVLLS-SSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 456 ----~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
...+|+.++|++|++.+|. .|+.||+.++.. ....++..+ .+.+.+..+ |++......+.+||||
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G 150 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEK-----RAMELLDMV--GLADKADHMPAQLSGG 150 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhHhhcChhhcCHH
Confidence 2456889999999998885 699999987521 112221111 112333333 4444455566789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeC
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~ 604 (1236)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||++++|++|++++.|+
T Consensus 151 ~~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~ 230 (252)
T TIGR03005 151 QQQRVAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGK 230 (252)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998753 789999999999985 499999999999999999
Q ss_pred ccccccccc
Q 040099 605 HSELLENPY 613 (1236)
Q Consensus 605 ~~~l~~~~~ 613 (1236)
++++...+.
T Consensus 231 ~~~~~~~~~ 239 (252)
T TIGR03005 231 PDEIFRQPK 239 (252)
T ss_pred HHHHhcCCC
Confidence 999876543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=378.72 Aligned_cols=220 Identities=31% Similarity=0.493 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--P---QAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++|++|.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.. .+.
T Consensus 12 ~l~i~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQ---HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECC---eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 4899999999963 469999999999999999999999999999999999997 3 69999999999863 345
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC---CCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---ATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+|+.++|++|++.+|+.|++||+.++... ..++ ++.++++..++.+++ .+.....+.+||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~l~~~~~~LS~Gq~ 161 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEV-------KDRLHTQALSLSGGQQ 161 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhhhhCCcccCCHHHH
Confidence 5678899999999999989999999876321 1222 233344444443322 2334566778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 162 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 241 (259)
T PRK14274 162 QRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKM 241 (259)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred ccccc
Q 040099 609 LENPY 613 (1236)
Q Consensus 609 ~~~~~ 613 (1236)
..++.
T Consensus 242 ~~~~~ 246 (259)
T PRK14274 242 FSNPD 246 (259)
T ss_pred hhCCC
Confidence 76533
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=382.33 Aligned_cols=212 Identities=30% Similarity=0.506 Sum_probs=181.3
Q ss_pred EEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC--hHHHh
Q 040099 1011 VQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ--VKWLR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~--~~~lR 1086 (1236)
|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ...+|
T Consensus 3 l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 82 (287)
T PRK13637 3 IKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDIR 82 (287)
T ss_pred EEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCccHHHHh
Confidence 78999999997421 136999999999999999999999999999999999999999999999999998754 45788
Q ss_pred cceEEEcCCC--CCChhhHHHHHHHHh---h-----hchHHHh-hhh-chh--hhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 QQMGVVSQEP--VLFSDTIRANIAEMA---N-----ANGFISG-LQE-GYD--TLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 ~~i~~V~Qdp--~LF~gTIreNL~~~a---~-----~~~~i~~-lp~-Gld--t~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++++||||+| .+|+.|++||+.-.. + ..+.+.. +.. |++ +........||||||||++|||||+.+
T Consensus 83 ~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~LSgGq~qrv~iAraL~~~ 162 (287)
T PRK13637 83 KKVGLVFQYPEYQLFEETIEKDIAFGPINLGLSEEEIENRVKRAMNIVGLDYEDYKDKSPFELSGGQKRRVAIAGVVAME 162 (287)
T ss_pred hceEEEecCchhccccccHHHHHHhHHHHCCCCHHHHHHHHHHHHHHcCCCchhhccCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999998 578899999995211 1 1111111 111 554 456677889999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||||++|++|++++.|+++++++.
T Consensus 163 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13637 163 PKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQGTPREVFKE 235 (287)
T ss_pred CCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 999999999999999999999999998753 789999999999985 5999999999999999999998763
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=364.09 Aligned_cols=224 Identities=36% Similarity=0.566 Sum_probs=196.6
Q ss_pred cEEEEeEEEECCCCCC---------------------CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 384 DIELKDVNFSYPARPD---------------------EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~---------------------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
.|+++||++-|..++. ..-++|+||+|+.||+..|.|-||||||||++++.|+++|+.|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 5889999988863211 1248999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHh----cceEEEccCCCCCc-hhHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCC
Q 040099 443 EVLIDGVNLKEFQLKWIR----EKIGLVSQEPVLLS-SSIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQ 511 (1236)
Q Consensus 443 ~i~~~g~~~~~~~~~~~r----~~i~~v~Q~~~l~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~ 511 (1236)
+|+++|.|+..++.++|| +++++|+|+.-|++ .||.||..||.+- .+ ++...++++.++++.|-.+.|+
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~FaLlPhrtVl~Nv~fGLev~Gv~~~er~~~a~~~l~~VgL~~~~~~yp~ 163 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFALLPHRTVLENVAFGLEVQGVPKAEREERALEALELVGLEGYADKYPN 163 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhccccchhHhhhhhcceeecCCCHHHHHHHHHHHHHHcCchhhhhcCcc
Confidence 999999999999877653 57999999999886 5999999999642 12 3446677888888888888875
Q ss_pred CccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhH-hhc
Q 040099 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLI-RNA 588 (1236)
Q Consensus 512 g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~-~~a 588 (1236)
+||||+|||+.|||||..+|+||++|||+|||||--+..+++-|.++.+ +||+++|||+++.. +-.
T Consensus 164 -----------eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG 232 (386)
T COG4175 164 -----------ELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIG 232 (386)
T ss_pred -----------cccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhcc
Confidence 8999999999999999999999999999999999999999999988754 79999999999986 559
Q ss_pred CeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 589 NIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 589 d~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
|||..|++|+|+..||++|++.+|...|-.
T Consensus 233 ~rIaimkdG~ivQ~Gtp~eIl~~PAndYV~ 262 (386)
T COG4175 233 DRIAIMKDGEIVQVGTPEEILLNPANDYVR 262 (386)
T ss_pred ceEEEecCCeEEEeCCHHHHHcCccHHHHH
Confidence 999999999999999999999988766644
|
|
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-41 Score=375.15 Aligned_cols=216 Identities=25% Similarity=0.458 Sum_probs=183.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 463 (1236)
|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGK---RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCC---EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 478999999963 46999999999999999999999999999999999999999999999999988776554 35679
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC--CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH--ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+|++|++.+|+. |++||+.++.+. ...++..+ .+++.+..+ |++........+||||||||++||||++.
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREE-----KLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 999999999886 999999875321 12222111 123444444 66666677778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 999999999999999999999999998875 47899999999987765 99999999999999999888764
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=381.11 Aligned_cols=222 Identities=27% Similarity=0.452 Sum_probs=184.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 460 (1236)
-|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .++
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998766543 357
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGKT---HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++++|++|++.+|+. |+.||+.++.. ..+.+ ++.+.++.. |++........+||||||||+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrv 152 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAV-----------GLRGAAKLMPSELSGGMARRA 152 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHc-----------CChhhhhCChhhCCHHHHHHH
Confidence 789999999999986 99999987421 11222 222333333 343334445568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 153 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (269)
T PRK11831 153 ALARAIALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQ 232 (269)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999998865 9999999999999999999987
Q ss_pred ccccchhhhh
Q 040099 610 ENPYGAYNRL 619 (1236)
Q Consensus 610 ~~~~~~y~~~ 619 (1236)
+++...+..+
T Consensus 233 ~~~~~~~~~~ 242 (269)
T PRK11831 233 ANPDPRVRQF 242 (269)
T ss_pred cCCcHHHHHH
Confidence 6533333433
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=391.91 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=185.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. ++.+
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~--~r~i 78 (353)
T TIGR03265 4 YLSIDNIRKRFGA---FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPPQ--KRDY 78 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999887764 6789
Q ss_pred EEEcCCCCCCh-hhHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.+|+ .|++||+.-. ..+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~l--~L~~~~~~~~~~LSgGq~QRvaLARaL~~~P~ll 156 (353)
T TIGR03265 79 GIVFQSYALFPNLTVADNIAYGLKNRGMGRAEVAERVAELLDLV--GLPGSERKYPGQLSGGQQQRVALARALATSPGLL 156 (353)
T ss_pred EEEeCCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCCchhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999996 5999999611 1122233322 5555666788899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||||||+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+|+++.+++...|
T Consensus 157 LLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g~~~~~~~~p~~~~ 230 (353)
T TIGR03265 157 LLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVGTPQEIYRHPATPF 230 (353)
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 99999999999999999999998754 6899999999999855 99999999999999999999998765545
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=388.00 Aligned_cols=227 Identities=30% Similarity=0.446 Sum_probs=188.2
Q ss_pred cEEEEeEEEECCCCC-------CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH
Q 040099 384 DIELKDVNFSYPARP-------DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~-------~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~ 456 (1236)
-|+++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|+|+++|++|+|.++|+++...+.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999996321 2469999999999999999999999999999999999999999999999999988764
Q ss_pred H---HHhcceEEEccCCC--CCc-hhHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 457 K---WIREKIGLVSQEPV--LLS-SSIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 457 ~---~~r~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
. .+|++|+||+|+|. |++ .|+.+|+..+. ..... +++.++++.+++.+ ......+.+
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~gL~~----------~~~~~~p~~ 154 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKVGLRP----------EHYDRYPHM 154 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHCCCCh----------HHhcCCCcc
Confidence 3 46788999999983 555 48998886421 11122 23445555554431 122345568
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
||||||||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|+
T Consensus 155 LSgGq~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~iv 234 (327)
T PRK11308 155 FSGGQRQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCV 234 (327)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 999999999999999999999999999999999999999999998854 7899999999999975 9999999999999
Q ss_pred EEeCcccccccccchhhhhH
Q 040099 601 EKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~ 620 (1236)
|.|+.+++++++...|.+..
T Consensus 235 e~g~~~~~~~~p~hpyt~~l 254 (327)
T PRK11308 235 EKGTKEQIFNNPRHPYTQAL 254 (327)
T ss_pred EECCHHHHhcCCCCHHHHHH
Confidence 99999999987666676643
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-41 Score=375.13 Aligned_cols=214 Identities=30% Similarity=0.473 Sum_probs=183.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-----CcEEEECCeecccC--ChH
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQKL--QVK 1083 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-----~G~I~idG~di~~i--~~~ 1083 (1236)
++++||+++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|++||.++... +..
T Consensus 2 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~~~~ 78 (247)
T TIGR00972 2 IEIENLNLFYGEK---EALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKIDVV 78 (247)
T ss_pred EEEEEEEEEECCe---eeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEccccccchH
Confidence 7899999999743 4899999999999999999999999999999999999998 99999999998763 456
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHHHhh-h-hchh----hhhcCCCCCCChhHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFISGL-Q-EGYD----TLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i~~l-p-~Gld----t~vge~G~~LSGGQrQRlaLARA 1148 (1236)
.+|++++|+||++.+|+.|++||+.-..... +.+..+ . -|++ ........+||||||||++||||
T Consensus 79 ~~~~~i~~v~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 158 (247)
T TIGR00972 79 ELRRRVGMVFQKPNPFPMSIYDNIAYGPRLHGIKDKKELDEIVEESLKKAALWDEVKDRLHDSALGLSGGQQQRLCIARA 158 (247)
T ss_pred HHHhheEEEecCcccCCCCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCcchhhHhhCCcccCCHHHHHHHHHHHH
Confidence 7789999999999999999999996221111 111111 0 1444 45567778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+...+
T Consensus 159 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~~ 238 (247)
T TIGR00972 159 LAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYGPTEQIFTNPKEKR 238 (247)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCChH
Confidence 99999999999999999999999999999988767899999999999865 99999999999999999999986544433
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-41 Score=380.50 Aligned_cols=214 Identities=32% Similarity=0.565 Sum_probs=183.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC-HHHHhcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-LKWIREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~r~~i 463 (1236)
++++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPD--GTPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCC--CCceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 689999999963 246999999999999999999999999999999999999999999999999997765 35678899
Q ss_pred EEEccCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEPV--LLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+||+|+|. +++.|++|||.++... .+. +++.++++..++ +......+..||||||||++||
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gl-----------~~~~~~~~~~LS~G~~qrv~la 148 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEIGL-----------EKYRHRSPKTLSGGQGQCVALA 148 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCC-----------HHHhcCCcccCCHHHHHHHHHH
Confidence 99999985 5678999999886421 222 223344444444 3344455568999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+.+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+..||+|++|++|++++.|+.+++...
T Consensus 149 ral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 149 GILTMEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999999999999998875 47899999999999988999999999999999999887654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=390.45 Aligned_cols=213 Identities=28% Similarity=0.441 Sum_probs=183.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.++. +++|
T Consensus 6 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 80 (351)
T PRK11432 6 FVVLKNITKRFGS---NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSIQ--QRDI 80 (351)
T ss_pred EEEEEeEEEEECC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999887653 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh--------hchHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN--------ANGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~--------~~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+||+|++.||.. |++||+.-... ..+.+..+- -|+..........||||||||+||||||+++|++|||
T Consensus 81 g~vfQ~~~lfp~~tv~eNi~~~l~~~~~~~~~~~~~v~~~l~~~gl~~~~~r~~~~LSgGq~QRVaLARaL~~~P~lLLL 160 (351)
T PRK11432 81 CMVFQSYALFPHMSLGENVGYGLKMLGVPKEERKQRVKEALELVDLAGFEDRYVDQISGGQQQRVALARALILKPKVLLF 160 (351)
T ss_pred EEEeCCcccCCCCCHHHHHHHHHhHcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCCEEEE
Confidence 999999999975 99999962111 111111111 1454455667789999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1159 DEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||||+||+.+...+++.|+++.+ ++|+|+|||+++.+.. ||+|+||++|+|++.|+|+++.+++...|
T Consensus 161 DEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g~~~~~~~~p~~~~ 232 (351)
T PRK11432 161 DEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIGSPQELYRQPASRF 232 (351)
T ss_pred cCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCchH
Confidence 999999999999999999998754 7899999999999855 99999999999999999999988765544
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=378.45 Aligned_cols=223 Identities=32% Similarity=0.512 Sum_probs=186.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 456 (1236)
.|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 12 ~l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGE---KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 5999999999963 4699999999999999999999999999999999999985 899999999998643 23
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
..+|+.++|++|++.+|+.|++||+.++.. ..+.+ ++.++++.+++.+++ .........+|||||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LSgG~~q 161 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDET-------SDRLKSPALSLSGGQQQ 161 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcch-------hhhhcCChhhCCHHHHH
Confidence 456788999999999999999999987531 12222 234444444432211 22345566789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 162 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 241 (258)
T PRK14268 162 RLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIF 241 (258)
T ss_pred HHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999999998778999999999999865 9999999999999999999987
Q ss_pred ccccchh
Q 040099 610 ENPYGAY 616 (1236)
Q Consensus 610 ~~~~~~y 616 (1236)
+++...|
T Consensus 242 ~~~~~~~ 248 (258)
T PRK14268 242 HNPREKS 248 (258)
T ss_pred cCCCCHH
Confidence 6544433
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=375.76 Aligned_cols=220 Identities=35% Similarity=0.554 Sum_probs=186.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 455 (1236)
+.|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGD---FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECC---ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 46899999999963 4699999999999999999999999999999999999863 69999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC--C-C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
...+|+.++|++|++.+|+.|++||+.++... . . ++++.++++.+++.+.+ .......+.+|||||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LS~G~ 151 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEV-------KDRLKKSALGLSGGQ 151 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------HHHHhcCCCCCCHHH
Confidence 55678899999999999989999999886321 1 1 23344445555443322 233456677999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 152 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~ 231 (250)
T PRK14240 152 QQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVD 231 (250)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778899999999998865 99999999999999999998
Q ss_pred ccccc
Q 040099 608 LLENP 612 (1236)
Q Consensus 608 l~~~~ 612 (1236)
+..++
T Consensus 232 ~~~~~ 236 (250)
T PRK14240 232 LFTNP 236 (250)
T ss_pred HHhCC
Confidence 87553
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=367.16 Aligned_cols=203 Identities=28% Similarity=0.458 Sum_probs=176.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..++++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999953 4699999999999999999999999999999999999999999999999988654 45677899
Q ss_pred EEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
||+|++.++. .|++||+.++.. ..+++++.++++..++.+... ..+..||||||||++||||++.+
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrv~la~al~~~ 144 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVVGLKDSAK-----------KKVKGFSLGMKQRLGIALALLGN 144 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHcCCHHHHh-----------hhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998875 699999987532 224556667777776655443 33458999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 145 PDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred CCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999998765
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-41 Score=382.50 Aligned_cols=217 Identities=28% Similarity=0.500 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCC---CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC-HHHH
Q 040099 384 DIELKDVNFSYPARP---DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-LKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~---~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-~~~~ 459 (1236)
-++++|++++|++.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.. ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 489999999997421 246999999999999999999999999999999999999999999999999987643 3557
Q ss_pred hcceEEEccCCC--CCchhHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 460 REKIGLVSQEPV--LLSSSIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 460 r~~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
|++++||+|+|. ++..|+.||+.++... .+ ++++.++++.+++.++..+. ..+||||||||
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~-----------~~~LS~G~~qr 152 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHA-----------PHLLSGGQKQR 152 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCC-----------cccCCHHHHHH
Confidence 889999999984 6767999999986321 12 23455666666666555444 45899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++.
T Consensus 153 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~ 232 (280)
T PRK13633 153 VAIAGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIF 232 (280)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHh
Confidence 9999999999999999999999999999999999998853 78999999999999889999999999999999999987
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
.+
T Consensus 233 ~~ 234 (280)
T PRK13633 233 KE 234 (280)
T ss_pred cC
Confidence 64
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=391.04 Aligned_cols=213 Identities=27% Similarity=0.412 Sum_probs=184.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+. +..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.++++. +++|
T Consensus 3 ~l~i~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 78 (356)
T PRK11650 3 GLKLQAVRKSYDG--KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEPA--DRDI 78 (356)
T ss_pred EEEEEeEEEEeCC--CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 3889999999952 23589999999999999999999999999999999999999999999999999887764 4789
Q ss_pred EEEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.+|. .|++|||.-... +.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 79 g~v~Q~~~lfp~~tv~eNi~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~QRvalARAL~~~P~ll 156 (356)
T PRK11650 79 AMVFQNYALYPHMSVRENMAYGLKIRGMPKAEIEERVAEAARIL--ELEPLLDRKPRELSGGQRQRVAMGRAIVREPAVF 156 (356)
T ss_pred EEEeCCccccCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc--CChhHhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999996 599999962111 11222221 5666666777899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++...|.
T Consensus 157 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g~~~~~~~~p~~~~~ 231 (356)
T PRK11650 157 LFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIGTPVEVYEKPASTFV 231 (356)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEECCHHHHHhCCccHHH
Confidence 99999999999999999999998754 6899999999998864 999999999999999999999887654443
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-41 Score=378.43 Aligned_cols=220 Identities=34% Similarity=0.520 Sum_probs=186.7
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 455 (1236)
..|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGT---FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECC---EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 35999999999963 469999999999999999999999999999999999987 699999999999853 45
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC--CC---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--AT---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
...+|++++||+|++.+|..|++||+.++... .. ++++.++++.+++.. ++++.......+|||||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~q 161 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWD-------ECKDKLNESGYSLSGGQQQ 161 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcc-------hhhhhhCCCcccCCHHHHH
Confidence 66778899999999999988999999986421 11 233444455444332 2233455667789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEEC-----------CE
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQ-----------GK 598 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~-----------G~ 598 (1236)
|++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++ |+
T Consensus 162 rl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~ 241 (269)
T PRK14259 162 RLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGY 241 (269)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccce
Confidence 999999999999999999999999999999999999998778899999999998865 999999996 67
Q ss_pred EEEEeCcccccccc
Q 040099 599 IVEKGTHSELLENP 612 (1236)
Q Consensus 599 i~~~g~~~~l~~~~ 612 (1236)
+++.|+.+++...+
T Consensus 242 ~~~~~~~~~~~~~~ 255 (269)
T PRK14259 242 LVEFNETKKIFNSP 255 (269)
T ss_pred EEEeCCHHHHHhCc
Confidence 99999999987653
|
|
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=369.65 Aligned_cols=205 Identities=30% Similarity=0.458 Sum_probs=177.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||++.|+.. ..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.... ..+|++++
T Consensus 1 l~~~~l~~~~~~~-~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 78 (220)
T cd03263 1 LQIRNLTKTYKKG-TKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-KAARQSLG 78 (220)
T ss_pred CEEEeeEEEeCCC-CceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-HHHhhhEE
Confidence 5789999999742 135999999999999999999999999999999999999999999999999987643 66788999
Q ss_pred EEcCCCCCC-hhhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLF-SDTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF-~gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
||+|++.+| ..|++||+.... .+.++++.+ |++........+||||||||++||||++++|++||
T Consensus 79 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 156 (220)
T cd03263 79 YCPQFDALFDELTVREHLRFYARLKGLPKSEIKEEVELLLRVL--GLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLL 156 (220)
T ss_pred EecCcCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHhChhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 999999998 579999985211 112222222 44444455567899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|||||++||+.+.+.+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 157 lDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~ 219 (220)
T cd03263 157 LDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIGSPQEL 219 (220)
T ss_pred ECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecCCHHHc
Confidence 99999999999999999999998777999999999999965 999999999999999999875
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=380.90 Aligned_cols=214 Identities=30% Similarity=0.529 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...++++++
T Consensus 4 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSG--SKEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCC--CCceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 789999999963 235999999999999999999999999999999999999999999999999998777777888999
Q ss_pred EEccCC--CCCchhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 465 LVSQEP--VLLSSSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 465 ~v~Q~~--~l~~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
||+|++ .+|+.|+.||+.++.. ..+. +++.++++..++.+++.+ ....||||||||++|||
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Gq~qrl~lar 150 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHMLGLEELRDR-----------VPHHLSGGEKKRVAIAG 150 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhHhcC-----------CcccCCHHHHHHHHHHH
Confidence 999997 4678899999987532 1222 234555666555554444 34589999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 151 aL~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 151 VIAMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999999999999998753 789999999999985 5999999999999999999998764
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=356.94 Aligned_cols=191 Identities=36% Similarity=0.516 Sum_probs=163.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.+++++|+.+|+. ..||+|+||+|++||+|+|+||||||||||++++.|+.+|++|+|.++|.++... ...+
T Consensus 3 ~l~i~~v~~~f~~---~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p-----~~~~ 74 (248)
T COG1116 3 LLEIEGVSKSFGG---VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP-----GPDI 74 (248)
T ss_pred eEEEEeeEEEeCc---eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC-----CCCE
Confidence 4789999999985 4699999999999999999999999999999999999999999999999988543 4679
Q ss_pred EEEcCCCCCChh-hHHHHHH---H---------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIA---E---------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~---~---------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.||+- ||+||+. + .+.+.+.++.. |+..--+.-..+||||||||+||||||+.+|+||
T Consensus 75 ~~vFQ~~~LlPW~Tv~~NV~l~l~~~~~~~~e~~~~a~~~L~~V--gL~~~~~~~P~qLSGGMrQRVaiARAL~~~P~lL 152 (248)
T COG1116 75 GYVFQEDALLPWLTVLDNVALGLELRGKSKAEARERAKELLELV--GLAGFEDKYPHQLSGGMRQRVAIARALATRPKLL 152 (248)
T ss_pred EEEeccCcccchhhHHhhheehhhccccchHhHHHHHHHHHHHc--CCcchhhcCccccChHHHHHHHHHHHHhcCCCEE
Confidence 999999999986 9999984 1 12223333221 4443444566899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeC--CEE
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQ--GMI 1210 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~I 1210 (1236)
+||||.+|||+.|...+|+-|.+..+ ++|+++|||+.+..-. +|||+||.+ |+|
T Consensus 153 LlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i 211 (248)
T COG1116 153 LLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRI 211 (248)
T ss_pred EEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcce
Confidence 99999999999999999999988753 5899999999998754 999999999 555
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=379.63 Aligned_cols=213 Identities=30% Similarity=0.504 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+++.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999963 4699999999999999999999999999999999999999999999999999887778888899
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC----------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH----------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+|++|++.++.. |+.||+.++... ..++++.++++.+++.+++.+. ..+||||||||+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LSgG~~qrv 156 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPLAHRL-----------VDSLSGGERQRA 156 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCC-----------cccCCHHHHHHH
Confidence 999999877654 999999976321 1123455666666665544443 348999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+.+++.
T Consensus 157 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~ 236 (265)
T PRK10575 157 WIAMLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELM 236 (265)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhc
Confidence 999999999999999999999999999999999998853 7899999999999864 9999999999999999998876
Q ss_pred c
Q 040099 610 E 610 (1236)
Q Consensus 610 ~ 610 (1236)
.
T Consensus 237 ~ 237 (265)
T PRK10575 237 R 237 (265)
T ss_pred C
Confidence 5
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=393.08 Aligned_cols=208 Identities=30% Similarity=0.453 Sum_probs=175.9
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe----ecCCCCHHHH---h-cceEEEccCCC
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV----NLKEFQLKWI---R-EKIGLVSQEPV 471 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~----~~~~~~~~~~---r-~~i~~v~Q~~~ 471 (1236)
..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|. ++...+...+ | ++|+||+|++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 5666655443 3 57999999999
Q ss_pred CCc-hhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 472 LLS-SSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 472 l~~-~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
+|+ .|++||+.++... .+. +++.++++..++.++. .....+||||||||++|||||+.+|+|
T Consensus 117 l~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~vgL~~~~-----------~~~~~~LSgGq~QRV~LARALa~~P~I 185 (382)
T TIGR03415 117 LMPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELVGLAQWA-----------DKKPGELSGGMQQRVGLARAFAMDADI 185 (382)
T ss_pred CCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhh-----------cCChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 997 6999999987421 122 2344555555554443 334458999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
||||||||+||+.+...+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+
T Consensus 186 LLlDEPts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 186 LLMDEPFSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred EEEECCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 999999999999999999999998854 789999999999975 59999999999999999999998765555544
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-41 Score=374.41 Aligned_cols=216 Identities=28% Similarity=0.520 Sum_probs=184.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999963 46999999999999999999999999999999999999999999999999987766544 45899
Q ss_pred EEccCCCCC-chhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 465 LVSQEPVLL-SSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 465 ~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
|++|++.++ ..|++||+.++.. ....++..+ .+.+++..+ |++......+.+||||||||++|||||+++
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~ 150 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARE-----RIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHR 150 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999874 5799999987532 122222211 123444444 666666777789999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 151 p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 151 PALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred CCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 99999999999999999999999999885 37899999999999888999999999999999998888654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=379.40 Aligned_cols=216 Identities=32% Similarity=0.598 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|++. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999632 35799999999999999999999999999999999999999999999999999877777888999
Q ss_pred EEEccCC--CCCchhHHHHHhcCCCC--CCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEP--VLLSSSIRDNIAYGKTH--ATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~--~l~~~ti~~ni~~g~~~--~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+||+|++ .++..|++|||.++... .+.++ +.++++..++.+++ .....+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrl~la 154 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKVGMEDYL-----------DKEPQNLSGGQKQRVAIA 154 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCCcccCCHHHHHHHHHH
Confidence 9999998 35567999999986321 22222 34444445544443 444569999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+.+++...
T Consensus 155 ral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 155 SVLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 4899999999999888999999999999999998887654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-41 Score=380.00 Aligned_cols=220 Identities=30% Similarity=0.472 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH
Q 040099 385 IELKDVNFSYPAR------PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~ 458 (1236)
|+++||+|+|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999631 1357999999999999999999999999999999999999999999999999998776543
Q ss_pred ---HhcceEEEccCCC--CC-chhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHH
Q 040099 459 ---IREKIGLVSQEPV--LL-SSSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQ 528 (1236)
Q Consensus 459 ---~r~~i~~v~Q~~~--l~-~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGq 528 (1236)
+|+.|+|++|++. ++ ..|++||+.++.. ....++..+ .+.+.++.+ |++ ......+.+|||||
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~LSgGe 155 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKA-----RIAELLDMV--GLRSEDADKLPRQLSGGQ 155 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHH-----HHHHHHHHc--CCChhhhhCChhhCCHHH
Confidence 5778999999983 44 3699999975421 111111111 112333333 443 34456677999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~ 605 (1236)
|||++|||||+.+|++|||||||++||+.++..+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 156 ~qrv~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~ 235 (265)
T TIGR02769 156 LQRINIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDV 235 (265)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCH
Confidence 9999999999999999999999999999999999999998854 7899999999999975 999999999999999999
Q ss_pred cccccc
Q 040099 606 SELLEN 611 (1236)
Q Consensus 606 ~~l~~~ 611 (1236)
+++...
T Consensus 236 ~~~~~~ 241 (265)
T TIGR02769 236 AQLLSF 241 (265)
T ss_pred HHHcCC
Confidence 999864
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=371.65 Aligned_cols=210 Identities=32% Similarity=0.529 Sum_probs=181.2
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HHh
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WLR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~lR 1086 (1236)
|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 2 i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (233)
T cd03258 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKELRKAR 81 (233)
T ss_pred eEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHH
Confidence 68999999997531 12599999999999999999999999999999999999999999999999999876543 357
Q ss_pred cceEEEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++++|+||+|.+|. .|++||+..... +.++++.+ |++........+||||||||++||||++++|
T Consensus 82 ~~i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p 159 (233)
T cd03258 82 RRIGMIFQHFNLLSSRTVFENVALPLEIAGVPKAEIEERVLELLELV--GLEDKADAYPAQLSGGQKQRVGIARALANNP 159 (233)
T ss_pred hheEEEccCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 89999999999997 599999852211 12222222 5555566777899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 160 ~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (233)
T cd03258 160 KVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEGTVEEVFAN 231 (233)
T ss_pred CEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhcC
Confidence 99999999999999999999999998753 7899999999999865 999999999999999999998753
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=378.97 Aligned_cols=219 Identities=30% Similarity=0.486 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999963 469999999999999999999999999999999999865 799999999999864 334
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCC---C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA---T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++++++|++|++.+|+.|++||+.++.... . ++.+.++++..++.+. +....+..+.+||||||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LSgGq~ 170 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDE-------VKDRLHSSALSLSGGQQ 170 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcc-------hHHHHhcCcccCCHHHH
Confidence 56788999999999999999999998753211 1 1223444444443211 12334566779999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 171 qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 250 (268)
T PRK14248 171 QRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQI 250 (268)
T ss_pred HHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998765 999999999999999999988
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
..++
T Consensus 251 ~~~~ 254 (268)
T PRK14248 251 FTSP 254 (268)
T ss_pred HhCC
Confidence 7653
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=364.57 Aligned_cols=204 Identities=33% Similarity=0.594 Sum_probs=179.9
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.++++|++++|+.. ..++|+|+||+|++||++||+|+||||||||+++|+|+++|++|+|.+||.++.+.+...+|+
T Consensus 4 ~~~l~~~~l~~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~ 82 (207)
T cd03369 4 HGEIEVENLSVRYAPD-LPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPLEDLRS 82 (207)
T ss_pred CCeEEEEEEEEEeCCC-CcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCHHHHHh
Confidence 3579999999999753 235899999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCH
Q 040099 1088 QMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
+++||||+|.+|++|++||+....... ...+.+-++ ++.....|||||+||++||||++++|++|||||||++||+
T Consensus 83 ~i~~v~q~~~~~~~tv~~~l~~~~~~~--~~~~~~~l~--~~~~~~~LS~G~~qrv~laral~~~p~llllDEP~~~LD~ 158 (207)
T cd03369 83 SLTIIPQDPTLFSGTIRSNLDPFDEYS--DEEIYGALR--VSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATASIDY 158 (207)
T ss_pred hEEEEecCCcccCccHHHHhcccCCCC--HHHHHHHhh--ccCCCCcCCHHHHHHHHHHHHHhhCCCEEEEeCCcccCCH
Confidence 999999999999999999995211110 011112222 5677889999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1168 ESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
.+...+.+.|++..+++|+|++||+++.+..||++++|++|++++.|++
T Consensus 159 ~~~~~l~~~l~~~~~~~tiii~th~~~~~~~~d~v~~l~~g~i~~~g~~ 207 (207)
T cd03369 159 ATDALIQKTIREEFTNSTILTIAHRLRTIIDYDKILVMDAGEVKEYDHP 207 (207)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEeCCHHHHhhCCEEEEEECCEEEecCCC
Confidence 9999999999998778999999999999988999999999999998875
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=369.34 Aligned_cols=209 Identities=30% Similarity=0.546 Sum_probs=173.0
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
|+++||+++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999996321 246999999999999999999999999999999999999999999999999998776543 33
Q ss_pred -cceEEEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 461 -EKIGLVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 461 -~~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
++++||+|++.+|+ .|++||+.++.. ....++..+. +.+++..+ |++.........||||||||++|||
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~lar 154 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKER-----AYEMLEKV--GLEHRINHRPSELSGGERQRVAIAR 154 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHH
Confidence 67999999999886 599999987421 1121111111 12233333 4554555566789999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEE
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIV 600 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~ 600 (1236)
||+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..+|+|++|++|+++
T Consensus 155 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 155 ALVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred HHhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999999998853 78999999999999889999999999985
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-41 Score=381.09 Aligned_cols=212 Identities=27% Similarity=0.481 Sum_probs=179.8
Q ss_pred EEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----CChHH
Q 040099 1011 VQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK----LQVKW 1084 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~----i~~~~ 1084 (1236)
|+++||+|+|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.. .+...
T Consensus 2 i~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 81 (288)
T PRK13643 2 IKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKP 81 (288)
T ss_pred EEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHHH
Confidence 78999999997421 1259999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCChhhHHHHHHHHh---h-----hchHHHhhh--hchh-hhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEP--VLFSDTIRANIAEMA---N-----ANGFISGLQ--EGYD-TLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp--~LF~gTIreNL~~~a---~-----~~~~i~~lp--~Gld-t~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|++++||+|+| .+|..|+.||+.-.. + ....+..+- -|++ ........+||||||||++|||||+.
T Consensus 82 ~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~aL~~ 161 (288)
T PRK13643 82 VRKKVGVVFQFPESQLFEETVLKDVAFGPQNFGIPKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAGILAM 161 (288)
T ss_pred HHhhEEEEecCcchhcccchHHHHHHhHHHHcCCCHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHHHHHh
Confidence 899999999998 789999999995211 1 111111111 1443 24467778999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|+||||||||++||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++..+
T Consensus 162 ~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 234 (288)
T PRK13643 162 EPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGTPSDVFQE 234 (288)
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHHcC
Confidence 999999999999999999999999998865 4789999999999885 5999999999999999999998764
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=377.38 Aligned_cols=223 Identities=32% Similarity=0.507 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 456 (1236)
.|+++|++|+|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGN---YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 4899999999963 469999999999999999999999999999999999997 489999999999854 344
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+++.++|++|++.+|+.|++||+.++... . .. +++.++++..+++.. ........+.+||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------~~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKE-------TKDNLDRNAQAFSGGQQ 153 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcc-------hHHHhccChhhCCHHHH
Confidence 5678889999999999999999999875321 1 11 233444444444211 11223456679999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++||||++++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 154 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14251 154 QRICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEM 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999998
Q ss_pred cccccchh
Q 040099 609 LENPYGAY 616 (1236)
Q Consensus 609 ~~~~~~~y 616 (1236)
...+...|
T Consensus 234 ~~~~~~~~ 241 (251)
T PRK14251 234 FIAPKKQI 241 (251)
T ss_pred HhCCCCHH
Confidence 76533333
|
|
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-41 Score=356.41 Aligned_cols=178 Identities=39% Similarity=0.662 Sum_probs=166.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+.+ ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 5789999999754 23599999999999999999999999999999999999999999999999998776 667889999
Q ss_pred EEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1091 VVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
|+||+|.+|+.|++||+ ..+||||||||++||||++++|++|||||||++||+.+.
T Consensus 79 ~~~q~~~~~~~tv~~~i------------------------~~~LS~G~~qrv~laral~~~p~~lllDEP~~~LD~~~~ 134 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL------------------------GRRFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITE 134 (178)
T ss_pred EEccCCeeecccHHHhh------------------------cccCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHH
Confidence 99999999999999998 467999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1171 RVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1171 ~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
+.+.+.|++..+++|+|++||+++.+..||++++|++|++++.|
T Consensus 135 ~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 135 RQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred HHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999887789999999999999889999999999998865
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-41 Score=370.61 Aligned_cols=206 Identities=34% Similarity=0.496 Sum_probs=173.2
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999996311 1469999999999999999999999999999999999999999999999998863 36789
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+||+|++.+|. .|++||+.++.. ... .+++.++++..++.++ ......+||||||||++|||
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~la~ 144 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELVGLSGF-----------ENAYPHQLSGGMRQRVALAR 144 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCcccCCHHHHHHHHHHH
Confidence 99999999887 599999987532 111 2334444555544443 34444689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEE--CCEEEEEeCcc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQ--QGKIVEKGTHS 606 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~--~G~i~~~g~~~ 606 (1236)
||+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||++++|+ +|+++++++.+
T Consensus 145 al~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 219 (220)
T cd03293 145 ALAVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEVD 219 (220)
T ss_pred HHHcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEec
Confidence 9999999999999999999999999999999874 37899999999998765 99999999 79999988753
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-41 Score=378.85 Aligned_cols=220 Identities=32% Similarity=0.528 Sum_probs=187.8
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--C
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--F 454 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~ 454 (1236)
.+.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD---KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECC---eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 346999999999963 4699999999999999999999999999999999999984 89999999999864 3
Q ss_pred CHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CC-C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 455 QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA-T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 455 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
+..++|+.++|++|++.+|+.|++||+.++.. .. . ++++.++++.+++.+++ .+..+..+.+||||
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G 172 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEV-------KDRLHENAFGLSGG 172 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhH-------HHHhhCCcccCCHH
Confidence 45577889999999999998899999987532 11 1 12345555555544332 23456677899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 173 q~qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 252 (272)
T PRK14236 173 QQQRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTD 252 (272)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHH
Confidence 999999999999999999999999999999999999999998778899999999999864 9999999999999999999
Q ss_pred ccccc
Q 040099 607 ELLEN 611 (1236)
Q Consensus 607 ~l~~~ 611 (1236)
++...
T Consensus 253 ~~~~~ 257 (272)
T PRK14236 253 TLFTS 257 (272)
T ss_pred HHhcC
Confidence 88754
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-41 Score=386.77 Aligned_cols=213 Identities=25% Similarity=0.477 Sum_probs=180.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.++...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999962 46999999999999999999999999999999999999999999999999987654 3578899
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||||++.++. .|++||+.+... ..+..+ +.++++..+ +.........+||||||||++|||
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LS~G~~qrl~la~ 151 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFAK-----------LENKADAKVGELSGGMKRRLTLAR 151 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------CchHhcCchhhCCHHHHHHHHHHH
Confidence 99999999886 599999986321 122222 223333332 222223334589999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||+.+|++|||||||++||+.+...+++.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 152 aL~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 152 ALVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred HHhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999999999999985 47899999999999976 999999999999999999998654
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=373.53 Aligned_cols=208 Identities=32% Similarity=0.548 Sum_probs=181.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++|++. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 1 l~~~~l~~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (242)
T cd03295 1 IEFENVTKRYGGG--KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDPVELRRKIG 78 (242)
T ss_pred CEEEEEEEEeCCc--ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCChHHhhcceE
Confidence 4689999999752 35899999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEcCCCCCCh-hhHHHHHHHHh------------hhchHHHhhhhchhh--hhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFS-DTIRANIAEMA------------NANGFISGLQEGYDT--LVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~-gTIreNL~~~a------------~~~~~i~~lp~Gldt--~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||+|.+|. .|++||+.... .+.+.++.+ |++. .....+.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~~~LS~G~~qrv~laral~~~p~l 156 (242)
T cd03295 79 YVIQQIGLFPHMTVEENIALVPKLLKWPKEKIRERADELLALV--GLDPAEFADRYPHELSGGQQQRVGVARALAADPPL 156 (242)
T ss_pred EEccCccccCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCCcHHHHhcChhhCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999996 69999985211 112222322 4443 45667789999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 lllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 226 (242)
T cd03295 157 LLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVGTPDEILRS 226 (242)
T ss_pred EEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHcC
Confidence 999999999999999999999998753 7899999999998755 999999999999999999999765
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=377.75 Aligned_cols=220 Identities=29% Similarity=0.479 Sum_probs=188.0
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--C
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--F 454 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~ 454 (1236)
...|+++|++|+|++ +++|+|+||++++||++||+||||||||||+++|+|+++ |++|+|.+||.++.. .
T Consensus 18 ~~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 94 (267)
T PRK14237 18 EIALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEI 94 (267)
T ss_pred CeEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccC
Confidence 346999999999953 569999999999999999999999999999999999997 589999999999864 3
Q ss_pred CHHHHhcceEEEccCCCCCchhHHHHHhcCCCC---CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 455 QLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 455 ~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
+...+|+.|+||+|++.+|..|++||+.++... .. ++++.++++..++.+++ ++..+..+.+||||
T Consensus 95 ~~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LS~G 167 (267)
T PRK14237 95 NVYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQV-------KDDLHKSALTLSGG 167 (267)
T ss_pred ChHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchh-------hhhhcCCcccCCHH
Confidence 455678899999999999989999999986321 11 12344455555554333 23456777899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||||++||||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 247 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTR 247 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999998778999999999998854 9999999999999999999
Q ss_pred ccccc
Q 040099 607 ELLEN 611 (1236)
Q Consensus 607 ~l~~~ 611 (1236)
++...
T Consensus 248 ~~~~~ 252 (267)
T PRK14237 248 NIFTN 252 (267)
T ss_pred HHhcC
Confidence 98764
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-41 Score=386.88 Aligned_cols=228 Identities=24% Similarity=0.373 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCCcEEEECCeecCCCCHHHH
Q 040099 385 IELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD----PQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
|+++|++++|+.+.. ..+|+||||+|++||++||||+||||||||+++|+|+++ |++|+|.++|+++.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 799999999974321 369999999999999999999999999999999999998 489999999999988877655
Q ss_pred h----cceEEEccCCC--CCc-hhHHHHHh----cCCCC---CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 460 R----EKIGLVSQEPV--LLS-SSIRDNIA----YGKTH---ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 460 r----~~i~~v~Q~~~--l~~-~ti~~ni~----~g~~~---~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+ +.|+||+|++. +.+ .|+.+++. ..... ...+++.++++..++.+. ....+..+.+||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~gL~~~--------~~~l~~~p~~LS 155 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQVGIPDP--------ASRLDVYPHQLS 155 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHCCCCCh--------HHHHhCCchhCC
Confidence 4 36999999984 443 25655543 22111 112334455555554321 123456677999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEE
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEK 602 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~ 602 (1236)
||||||++|||||+.+|++||+|||||+||+.++..+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|+|.
T Consensus 156 gGq~QRv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~ 235 (326)
T PRK11022 156 GGMSQRVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVET 235 (326)
T ss_pred HHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999999853 789999999999985 5999999999999999
Q ss_pred eCcccccccccchhhhhH
Q 040099 603 GTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 603 g~~~~l~~~~~~~y~~~~ 620 (1236)
|+.+++++++...|.+..
T Consensus 236 g~~~~~~~~p~hpyt~~l 253 (326)
T PRK11022 236 GKAHDIFRAPRHPYTQAL 253 (326)
T ss_pred CCHHHHhhCCCChHHHHH
Confidence 999999987777776543
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=379.91 Aligned_cols=216 Identities=31% Similarity=0.566 Sum_probs=187.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC---cEEEECCeecCCCCHHHHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA---GEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~---G~i~~~g~~~~~~~~~~~r 460 (1236)
.|+++|++|+|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++ |+|.++|.++...+...++
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999998 8999999999877777778
Q ss_pred cceEEEccCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEPV--LLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++||||+|++. +++.|+.|||.++... .+. +++.++++..++.++..+. ..+||||||||+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~-----------~~~LS~G~~qrv 152 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADVGMLDYIDSE-----------PANLSGGQKQRV 152 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHCCChhHhcCC-----------cccCCHHHHHHH
Confidence 89999999984 5678999999986322 233 2345556666655544444 468999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++++.|+++++..
T Consensus 153 ~laral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 232 (282)
T PRK13640 153 AIAGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFS 232 (282)
T ss_pred HHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998753 789999999999998899999999999999999988865
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 233 ~ 233 (282)
T PRK13640 233 K 233 (282)
T ss_pred C
Confidence 4
|
|
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-41 Score=371.72 Aligned_cols=206 Identities=29% Similarity=0.518 Sum_probs=180.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+... +++++
T Consensus 2 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~~~-~~~i~ 77 (236)
T TIGR03864 2 LEVAGLSFAYGA---RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPRAA-LARLG 77 (236)
T ss_pred EEEEeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCChhh-hhhEE
Confidence 689999999974 35899999999999999999999999999999999999999999999999998776544 46899
Q ss_pred EEcCCCCC-ChhhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVL-FSDTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~L-F~gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||++.+ +..|++||+...+. +.++++.+ |++........+||||||||++|||||+++|+|||
T Consensus 78 ~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 155 (236)
T TIGR03864 78 VVFQQPTLDLDLSVRQNLRYHAALHGLSRAEARERIAALLARL--GLAERADDKVRELNGGHRRRVEIARALLHRPALLL 155 (236)
T ss_pred EeCCCCCCcccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999987 56799999952211 12223322 56666677788999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 156 lDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 222 (236)
T TIGR03864 156 LDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEADDRLVVLHRGRVLADGAAAELRGA 222 (236)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhhCCEEEEEeCCeEEEeCCHHHHHHH
Confidence 999999999999999999999875 37899999999999988999999999999999999999875
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-41 Score=376.27 Aligned_cols=219 Identities=31% Similarity=0.488 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--P---QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~~ 456 (1236)
-++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++... +.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNK---KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECC---eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 4899999999963 469999999999999999999999999999999999954 6 599999999998643 34
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--C-CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--H-AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~-~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+|+.++||+|++.+|+.|++||+.++.. . .. ++++.++++.+++.+.+ .+..+..+.+||||||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 154 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEV-------KDRLHDSALGLSGGQQ 154 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhH-------HHHHhcCcccCCHHHH
Confidence 567888999999999999999999987521 1 11 12333444444443222 2345566779999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 234 (252)
T PRK14239 155 QRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999998765 999999999999999999998
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
.+.+
T Consensus 235 ~~~~ 238 (252)
T PRK14239 235 FMNP 238 (252)
T ss_pred HhCC
Confidence 7653
|
|
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-41 Score=389.50 Aligned_cols=200 Identities=34% Similarity=0.488 Sum_probs=176.3
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----hcceEEEcCCCCCChh
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL----RQQMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~LF~g 1101 (1236)
..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.|+...+...+ |++++||+|++.+|+.
T Consensus 6 ~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~~~l~~~ 85 (363)
T TIGR01186 6 KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQFALFPH 85 (363)
T ss_pred ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECCCcCCCC
Confidence 358999999999999999999999999999999999999999999999999999998887 7899999999999974
Q ss_pred -hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040099 1102 -TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168 (1236)
Q Consensus 1102 -TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~ 1168 (1236)
||+||+.-. ..+.+.++. -|++...+....+||||||||++|||||+++|+|||||||||+||+.
T Consensus 86 ~TV~eNi~~~~~~~~~~~~~~~~~~~~~l~~--vgL~~~~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlDEP~saLD~~ 163 (363)
T TIGR01186 86 MTILQNTSLGPELLGWPEQERKEKALELLKL--VGLEEYEHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPL 163 (363)
T ss_pred CCHHHHHHHHHHHcCCCHHHHHHHHHHHHHh--cCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHH
Confidence 999999511 111222222 26666777888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1169 SERVVQDALDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1169 te~~I~~~L~~~~--~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
+.+.+++.+.++. .++|+|+|||+++.+. .||+|++|++|++++.|+|++++.++...|
T Consensus 164 ~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g~~~ei~~~p~~~~ 225 (363)
T TIGR01186 164 IRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVGTPDEILRNPANEY 225 (363)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeCCHHHHHhCcccHH
Confidence 9999999998874 3789999999999874 599999999999999999999988654444
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-41 Score=374.24 Aligned_cols=216 Identities=27% Similarity=0.407 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i~~ 1082 (1236)
-++++|++++|++. ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .+.
T Consensus 7 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 83 (254)
T PRK14273 7 IIETENLNLFYTDF---KALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNNFDI 83 (254)
T ss_pred eEEEeeeEEEeCCc---eeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEecccccccH
Confidence 58999999999743 589999999999999999999999999999999999997 48999999999853 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHHh------hhhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFISG------LQEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~~------lp~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++||||++.+|+.|++||+...... .+.+.. +.+++.........+||||||||++|||
T Consensus 84 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG~~qrv~lar 163 (254)
T PRK14273 84 LELRRKIGMVFQTPNPFLMSIYDNISYGPKIHGTKDKKKLDEIVEQSLKKSALWNEVKDKLNTNALSLSGGQQQRLCIAR 163 (254)
T ss_pred HHHhhceEEEeeccccccCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCchhhHHHHhCCcccCCHHHHHHHHHHH
Confidence 6788999999999999999999999621111 111111 1111122345567899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.-.
T Consensus 164 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 243 (254)
T PRK14273 164 TLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEESSTDELFFNPKNT 243 (254)
T ss_pred HHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999998777899999999999865 9999999999999999999998754443
Q ss_pred cH
Q 040099 1227 YT 1228 (1236)
Q Consensus 1227 y~ 1228 (1236)
|.
T Consensus 244 ~~ 245 (254)
T PRK14273 244 KT 245 (254)
T ss_pred HH
Confidence 43
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=373.14 Aligned_cols=205 Identities=35% Similarity=0.456 Sum_probs=177.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+++++
T Consensus 12 ~l~i~~l~~~~~~---~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGE---RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 5999999999963 46999999999999999999999999999999999999999999999998763 457789
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
+|++|++.+|+ .|++||+.++.....++++.++++..++.++ ....+.+||||||||++|||||+++|
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~-----------~~~~~~~LSgGqkqrl~laraL~~~p 152 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAVGLADR-----------ANEWPAALSGGQKQRVALARALIHRP 152 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999999887 5999999986432223455555555555433 44455689999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccc
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~ 607 (1236)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++|+++++|+.+.
T Consensus 153 ~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~~ 220 (257)
T PRK11247 153 GLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVDL 220 (257)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeccccc
Confidence 9999999999999999999999998874 37899999999999864 99999999999999887653
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=376.24 Aligned_cols=219 Identities=34% Similarity=0.535 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC---CCC--CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF---YDP--QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~---~~~--~~G~i~~~g~~~~~~--~~ 456 (1236)
.|+++|+++.|+. +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4899999999963 4699999999999999999999999999999999997 454 599999999998653 34
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC--C-C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++++++|++|++.+|+.|++||+.++... . . ++++.++++..++.+++ ++.....+.+||||||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 152 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEV-------KDKLKESAFALSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcch-------hhhhhCCcccCCHHHH
Confidence 5678899999999999988999999875321 1 1 12334444444443222 2345567789999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~ 232 (250)
T PRK14245 153 QRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKI 232 (250)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999855 999999999999999999998
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
.+++
T Consensus 233 ~~~~ 236 (250)
T PRK14245 233 FTNP 236 (250)
T ss_pred hcCC
Confidence 7653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=373.37 Aligned_cols=207 Identities=35% Similarity=0.540 Sum_probs=179.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHHHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~lR~ 1087 (1236)
++++||+++|+.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+ ...+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG--KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKALRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc--cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhHHHHHHh
Confidence 4689999999741 35899999999999999999999999999999999999999999999999998776 466888
Q ss_pred ceEEEcCCCCCCh-hhHHHHHHHHh--------------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIAEMA--------------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~~~a--------------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
.++|+||++.+|. .|++||+.... .+.+.+..+ |++......+.+||||||||++||
T Consensus 79 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERV--GLLDKAYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCcccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHc--CChhhhCCCcccCCHHHHHHHHHH
Confidence 9999999998887 69999995210 011112221 455556677889999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|||+++|+||||||||++||+.+...+.+.|++.. .++|+|+|||+++.+. .||+|++|++|++++.|+++++.+
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~ 234 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDGPPAELTD 234 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecCHHHhhH
Confidence 99999999999999999999999999999999875 3789999999999998 599999999999999999999743
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-41 Score=389.04 Aligned_cols=229 Identities=23% Similarity=0.394 Sum_probs=188.4
Q ss_pred cEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCeecCCCCHHHH
Q 040099 384 DIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~~~~~ 459 (1236)
-++++|++++|+.+. ..++|+||||+|++||++||+|+||||||||+++|+|+++|+ +|+|.++|.++..++.+++
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996322 246999999999999999999999999999999999999996 9999999999988877655
Q ss_pred h----cceEEEccCC--CCCc-hhHHHHHhcCC---CCCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 460 R----EKIGLVSQEP--VLLS-SSIRDNIAYGK---THATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 460 r----~~i~~v~Q~~--~l~~-~ti~~ni~~g~---~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
+ ++|+||+|++ .+++ .|+.+|+.... ...+.++ +.+.++.. .+|++. +.++..+.+||
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~v-------gL~~~~-~~~~~~p~~LS 163 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAV-------KMPEAR-KRMKMYPHEFS 163 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc-------CCCChH-HHhcCCcccCC
Confidence 3 4799999998 4554 47777775321 1123322 22233322 233322 23567788999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEE
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEK 602 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~ 602 (1236)
||||||++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.
T Consensus 164 gG~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~ 243 (330)
T PRK09473 164 GGMRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEY 243 (330)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEE
Confidence 9999999999999999999999999999999999999999998854 7899999999999875 999999999999999
Q ss_pred eCcccccccccchhhhhH
Q 040099 603 GTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 603 g~~~~l~~~~~~~y~~~~ 620 (1236)
|+++++.+++...|.+..
T Consensus 244 g~~~~i~~~p~~pyt~~l 261 (330)
T PRK09473 244 GNARDVFYQPSHPYSIGL 261 (330)
T ss_pred CCHHHHHhCCCCHHHHHH
Confidence 999999988777787643
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-41 Score=373.16 Aligned_cols=217 Identities=34% Similarity=0.562 Sum_probs=183.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC--CHHHHhcc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF--QLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~--~~~~~r~~ 462 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..+++++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999963 4699999999999999999999999999999999999999999999999998764 34567889
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
++|++|++.++. .|++||+.++.. ..+.++..+ .+.+.++.+ |++.........||||||||++||||+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al 151 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEK-----QARELLAKV--GLAERAHHYPSELSGGQQQRVAIARAL 151 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHH-----HHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHH
Confidence 999999998886 599999987531 112222211 112334443 555555666679999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+++|+++||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++.+.
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 152 AVKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999998875 47899999999999865 999999999999999999888654
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=367.34 Aligned_cols=203 Identities=32% Similarity=0.530 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGN---VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECC---eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998765432 46799
Q ss_pred EEccCCCCCc-hhHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|. .|++||+.++.. ....+ ++.++++..++. ........+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LS~G~~qr~~lara 144 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELLQIE-----------HLLDRKPKQLSGGQRQRVALGRA 144 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCH-----------HHHhCChhhCCHHHHHHHHHHHH
Confidence 9999999886 599999987532 11222 233444444443 33444556899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
++++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 145 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 145 IVREPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 9999999999999999999999999999998753 7899999999998875 9999999999999865
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=372.84 Aligned_cols=219 Identities=25% Similarity=0.411 Sum_probs=182.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 462 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGK---IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCC---ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 3899999999963 46999999999999999999999999999999999999999999999999998777543 6778
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
++|++|++.+|+. |++||+.++......++..+.+ .+.+..++ +++.........||||||||++||||++.+
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 155 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERI-----KWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQ 155 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHH-----HHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhC
Confidence 9999999999985 9999999864322222222211 11222221 122223345678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|+||||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||++++|++|++++.|+++++...
T Consensus 156 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 156 PRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 99999999999999999999999999875 4799999999999875 5999999999999999999988653
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=373.11 Aligned_cols=217 Identities=34% Similarity=0.556 Sum_probs=183.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC--------H
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ--------L 456 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~--------~ 456 (1236)
++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ .
T Consensus 4 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHG---QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECC---eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 899999999963 46999999999999999999999999999999999999999999999999986532 3
Q ss_pred HHHhcceEEEccCCCCCc-hhHHHHHhcCC---CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLS-SSIRDNIAYGK---THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
..+|++++||+|++.+|+ .|++||+.++. .....++..+. +.+.+..+ |++......+.+||||||||+
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv 153 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATAR-----ARELLAKV--GLAGKETSYPRRLSGGQQQRV 153 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHH-----HHHHHHHc--CCcchhhCChhhCChHHHHHH
Confidence 456788999999998886 69999998742 11122222111 12334444 555555667789999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 154 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 233 (250)
T PRK11264 154 AIARALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFA 233 (250)
T ss_pred HHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhc
Confidence 999999999999999999999999999999999998754 7899999999999865 99999999999999999999876
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 234 ~ 234 (250)
T PRK11264 234 D 234 (250)
T ss_pred C
Confidence 5
|
|
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-41 Score=375.79 Aligned_cols=212 Identities=26% Similarity=0.501 Sum_probs=184.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..++++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998877778888899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCC----------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTH----------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~----------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
|++|++.++.+ |+.||+.++... ...+++.++++..++.++ ....+..||||||||++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~ 148 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-----------ADRRLTDLSGGQRQRAF 148 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-----------HcCCcccCCHHHHHHHH
Confidence 99999988876 999999986321 012234455555554433 33445689999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
||||++.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+.+++..
T Consensus 149 laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 227 (255)
T PRK11231 149 LAMVLAQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMT 227 (255)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcC
Confidence 9999999999999999999999999999999998875 47899999999999865 99999999999999999988865
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-41 Score=380.60 Aligned_cols=221 Identities=28% Similarity=0.541 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHH
Q 040099 384 DIELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~ 457 (1236)
.|+++|++++|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999996321 14699999999999999999999999999999999999999999999999998643 245
Q ss_pred HHhcceEEEccCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 040099 458 WIREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRi 532 (1236)
..++.|+|++|+| .+|..|++|||.++.. ....++..+. +.+.+..+ |++ ........+||||||||+
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl 154 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEK-----ALKWLKKV--GLSEDLISKSPFELSGGQMRRV 154 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHc--CCChhHhhCCcccCCHHHHHHH
Confidence 6678899999998 5777899999987532 2222222211 12233333 454 234556679999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++..
T Consensus 155 ~laral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 234 (287)
T PRK13641 155 AIAGVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFS 234 (287)
T ss_pred HHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999999999999999885 47899999999999865 99999999999999999998865
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
.
T Consensus 235 ~ 235 (287)
T PRK13641 235 D 235 (287)
T ss_pred C
Confidence 4
|
|
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-41 Score=367.45 Aligned_cols=201 Identities=32% Similarity=0.527 Sum_probs=172.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 461 (1236)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+++.. .+++
T Consensus 2 l~~~~l~~~~~~--~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPG--GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCC--CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999876543 4678
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCC--CC----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKT--HA----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~--~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
.++|++|++.+|. .|++||+.++.. .. .++++.++++..++.++..+. ..+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~LS~G~~qrl~l 148 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQVGLEHKADAF-----------PEQLSGGEQQRVAI 148 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhhhhCC-----------hhhCCHHHHHHHHH
Confidence 8999999999886 599999987521 11 123455666666655544443 35899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCE
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~ 598 (1236)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|+
T Consensus 149 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 149 ARAIVNSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred HHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999999999999875 47899999999999876 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=375.70 Aligned_cols=220 Identities=31% Similarity=0.486 Sum_probs=187.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.. .+.
T Consensus 10 ~l~i~~v~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGS---FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECC---EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 4899999999963 469999999999999999999999999999999999986 489999999998853 445
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
.+++++|+|++|++.+|+.|++||+.++.... .++++.++++.+++.+++. ...+..+.+||||||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 159 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVK-------DKLKQSGLSLSGGQQQR 159 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHH-------HHhcCCcccCCHHHHHH
Confidence 66788999999999999889999999864211 1233445556666554442 23456677899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEE---------CCEEEE
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQ---------QGKIVE 601 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~---------~G~i~~ 601 (1236)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++
T Consensus 160 v~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~ 239 (264)
T PRK14243 160 LCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVE 239 (264)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998777899999999999865 99999998 899999
Q ss_pred EeCccccccccc
Q 040099 602 KGTHSELLENPY 613 (1236)
Q Consensus 602 ~g~~~~l~~~~~ 613 (1236)
.|+++++.+.+.
T Consensus 240 ~~~~~~~~~~~~ 251 (264)
T PRK14243 240 FDRTEKIFNSPQ 251 (264)
T ss_pred eCCHHHHHhCCC
Confidence 999999976543
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=374.30 Aligned_cols=224 Identities=28% Similarity=0.490 Sum_probs=187.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeecCCC--C
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--P---QAGEVLIDGVNLKEF--Q 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~~--~ 455 (1236)
+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++... +
T Consensus 3 ~~l~~~nl~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGK---NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 56999999999963 469999999999999999999999999999999999986 4 699999999998643 3
Q ss_pred HHHHhcceEEEccCCCCCc-hhHHHHHhcCCCC---CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 456 LKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTH---ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
...+|+.++|++|++.+|. .|++||+.++... .+. +++.++++..++.+++. ...+..+.+||||
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LS~G 152 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVK-------DRLKSNAMELSGG 152 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhh-------HHhhCCcCcCCHH
Confidence 4567889999999999987 5999999875211 111 23445555555443322 2234567789999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||||++||||++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 153 ~~qrl~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~ 232 (252)
T PRK14256 153 QQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETK 232 (252)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999999999778899999999999854 9999999999999999999
Q ss_pred cccccccchh
Q 040099 607 ELLENPYGAY 616 (1236)
Q Consensus 607 ~l~~~~~~~y 616 (1236)
++...+...|
T Consensus 233 ~~~~~~~~~~ 242 (252)
T PRK14256 233 KIFTTPEKKQ 242 (252)
T ss_pred HHHhCCCcHH
Confidence 9876544333
|
|
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=373.13 Aligned_cols=206 Identities=33% Similarity=0.516 Sum_probs=178.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh---HHHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV---KWLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~---~~lR~ 1087 (1236)
|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++. ..+|+
T Consensus 2 l~~~~l~~~~~~--~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (243)
T TIGR02315 2 LEVENLSKVYPN--GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKKLRKLRR 79 (243)
T ss_pred eEEEeeeeecCC--CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHHHHHHHh
Confidence 679999999972 2359999999999999999999999999999999999999999999999999987654 44788
Q ss_pred ceEEEcCCCCCCh-hhHHHHHHHH--------------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIAEM--------------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~~~--------------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
+++||||++.+|. .|++||+.-. ..+.+.++.+ |++........+||||||||++||
T Consensus 80 ~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la 157 (243)
T TIGR02315 80 RIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERV--GLADKAYQRADQLSGGQQQRVAIA 157 (243)
T ss_pred heEEEcCCCcccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHH
Confidence 9999999998886 5999999510 0111122222 555566677889999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|||+++|++|||||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 158 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 234 (243)
T TIGR02315 158 RALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDGAPSELD 234 (243)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecCCHHHhC
Confidence 999999999999999999999999999999998743 7899999999999865 9999999999999999999974
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-41 Score=373.07 Aligned_cols=221 Identities=24% Similarity=0.457 Sum_probs=185.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 463 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999988776554 35579
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCCCH--HH---HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHATK--EE---IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~~--~~---~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
+|++|++.+|++ |++||+.++...... .. .........+.+.+..+ |++........+||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999986 999999886321000 00 00000111223444444 56656667778999999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999975 99999999999999999988764
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-41 Score=371.83 Aligned_cols=205 Identities=33% Similarity=0.483 Sum_probs=178.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|++++
T Consensus 3 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 77 (239)
T cd03296 3 IEVRNVSKRFGD---FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVPV--QERNVG 77 (239)
T ss_pred EEEEeEEEEECC---EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc--cccceE
Confidence 789999999975 359999999999999999999999999999999999999999999999999876653 367899
Q ss_pred EEcCCCCCCh-hhHHHHHHHHhhh----------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1091 VVSQEPVLFS-DTIRANIAEMANA----------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1091 ~V~Qdp~LF~-gTIreNL~~~a~~----------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
||||+|.+|. .|++||+.-.... .+.+..+ |++........+||||||||++|||||+++|
T Consensus 78 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 155 (239)
T cd03296 78 FVFQHYALFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLV--QLDWLADRYPAQLSGGQRQRVALARALAVEP 155 (239)
T ss_pred EEecCCcccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCC
Confidence 9999999986 5999999622111 1112211 4555566677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|||||||++||+++.+.+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 ~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (239)
T cd03296 156 KVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVGTPDEVYDH 227 (239)
T ss_pred CEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHHhcC
Confidence 99999999999999999999999998753 6899999999998765 999999999999999999999765
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-41 Score=370.44 Aligned_cols=206 Identities=27% Similarity=0.475 Sum_probs=179.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 77 (232)
T cd03218 1 LRAENLSKRYGKR---KVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMHKRARLGI 77 (232)
T ss_pred CeEEEEEEEeCCE---EeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHhHHHhccE
Confidence 4789999999743 5899999999999999999999999999999999999999999999999998777655 45789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|+||++.+|.+ |++||+.-.. .+.+++..+ |++........+||||||||++||||++.+|++|
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ll 155 (232)
T cd03218 78 GYLPQEASIFRKLTVEENILAVLEIRGLSKKEREEKLEELLEEF--HITHLRKSKASSLSGGERRRVEIARALATNPKFL 155 (232)
T ss_pred EEecCCccccccCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999987 9999985211 112223322 5666667778899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||||++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 156 llDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~ 222 (232)
T cd03218 156 LLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEGTPEEIAA 222 (232)
T ss_pred EecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEeCHHHhhc
Confidence 9999999999999999999998875 47899999999988765 99999999999999999999865
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-41 Score=376.61 Aligned_cols=220 Identities=32% Similarity=0.532 Sum_probs=184.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCCCC--HH
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKEFQ--LK 457 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~~--~~ 457 (1236)
-+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 478999999962 469999999999999999999999999999999999986 47999999999886543 33
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCC--CC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
.+|++++|++|++.+|+.|++||+.++.. .. . ++++.++++..++.+++ .+.++..+.+||||||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 155 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEEL-------GDRLKDSAFELSGGQQ 155 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchh-------hhHhhcChhhCCHHHH
Confidence 56889999999999999999999987521 11 1 12334444554443321 2234566778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 156 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 235 (251)
T PRK14244 156 QRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEI 235 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988778999999999999865 999999999999999999998
Q ss_pred cccccc
Q 040099 609 LENPYG 614 (1236)
Q Consensus 609 ~~~~~~ 614 (1236)
...+..
T Consensus 236 ~~~~~~ 241 (251)
T PRK14244 236 FKNPQS 241 (251)
T ss_pred hcCCCC
Confidence 766433
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-41 Score=378.40 Aligned_cols=220 Identities=31% Similarity=0.555 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHH
Q 040099 385 IELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~ 458 (1236)
|+++||+|+|++.. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997421 14699999999999999999999999999999999999999999999999998753 3456
Q ss_pred HhcceEEEccCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHH
Q 040099 459 IREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 459 ~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRia 533 (1236)
+|+.|+|++|++ .+|+.|++||+.++.. ..+.++..+.+ .+.++.+ |++ ........+||||||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LSgG~~qrv~ 155 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALA-----REKLALV--GISESLFEKNPFELSGGQMRRVA 155 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhhhhCCcccCCHHHHHHHH
Confidence 788999999998 6788899999987532 12333322211 1223332 443 2345666789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 156 la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 156 IAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999999998754 7899999999998865 999999999999999999888654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=380.84 Aligned_cols=223 Identities=29% Similarity=0.508 Sum_probs=182.6
Q ss_pred CCcEEEEeEEEECCCCC--CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----C-
Q 040099 382 RGDIELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE----F- 454 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~--~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~----~- 454 (1236)
.+.|+++|++++|+++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 35799999999997432 1359999999999999999999999999999999999999999999999998852 2
Q ss_pred CHHHHhcceEEEccCC--CCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHH
Q 040099 455 QLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQK 529 (1236)
Q Consensus 455 ~~~~~r~~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqk 529 (1236)
+...+|+.|+||+|++ .+|..|++||+.++.. ....++..+.+ .+.+..+ |+. ........+||||||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~-----~~ll~~~--~L~~~~~~~~~~~LS~Gq~ 156 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKV-----PELLKLV--QLPEDYVKRSPFELSGGQK 156 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CCChhHhcCChhhCCHHHH
Confidence 3456788999999998 4677899999998632 12232222211 1122222 331 234556678999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~ 606 (1236)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 157 qrv~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~ 236 (289)
T PRK13645 157 RRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPF 236 (289)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHH
Confidence 999999999999999999999999999999999999998753 7899999999998754 9999999999999999988
Q ss_pred ccccc
Q 040099 607 ELLEN 611 (1236)
Q Consensus 607 ~l~~~ 611 (1236)
++...
T Consensus 237 ~~~~~ 241 (289)
T PRK13645 237 EIFSN 241 (289)
T ss_pred HHhcC
Confidence 87654
|
|
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-41 Score=379.57 Aligned_cols=210 Identities=30% Similarity=0.520 Sum_probs=179.7
Q ss_pred EEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----CChHH
Q 040099 1011 VQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK----LQVKW 1084 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~----i~~~~ 1084 (1236)
++++||+++|+... ..++|+||||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. .+...
T Consensus 3 l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (290)
T PRK13634 3 ITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLKP 82 (290)
T ss_pred EEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHHH
Confidence 78999999997421 1359999999999999999999999999999999999999999999999999863 34567
Q ss_pred HhcceEEEcCCC--CCChhhHHHHHHHH---h---------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1085 LRQQMGVVSQEP--VLFSDTIRANIAEM---A---------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1085 lR~~i~~V~Qdp--~LF~gTIreNL~~~---a---------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
.|++++||||+| .+|+.|++||+.-. . .+.+.++.+ |++ .........||||||||++|||||
T Consensus 83 ~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrv~lAraL 160 (290)
T PRK13634 83 LRKKVGIVFQFPEHQLFEETVEKDICFGPMNFGVSEEDAKQKAREMIELV--GLPEELLARSPFELSGGQMRRVAIAGVL 160 (290)
T ss_pred HHhhEEEEeeCchhhhhhhhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCChhhhhCCcccCCHHHHHHHHHHHHH
Confidence 888999999998 68889999999511 1 111222222 454 234567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+.+|++|||||||++||+.+...+.+.|+++.+ +.|||+|||+++.+. .||||++|++|++++.|+++++.+.
T Consensus 161 ~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 236 (290)
T PRK13634 161 AMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQGTPREIFAD 236 (290)
T ss_pred HcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 999999999999999999999999999998753 789999999999985 4999999999999999999998754
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-41 Score=376.28 Aligned_cols=220 Identities=28% Similarity=0.477 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~~ 456 (1236)
-++++|++++|++ +++|+|+||+|++||++||+|+||||||||+++|+|+++ |++|+|.++|+++.. .+.
T Consensus 24 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGE---DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECC---cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 5999999999963 469999999999999999999999999999999999987 699999999999853 345
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--CCCHH-----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HATKE-----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~-----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++++++|++|++.+|..|++||+.++.. ...++ .+.++++..++. +++.......+.+||||||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~l~~~~~~~~~~LSgGe~ 173 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIW-------DELKDRLHDNAYGLSGGQQ 173 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCc-------chHHHHHhcCcccCCHHHH
Confidence 567889999999999998999999987532 11111 122233333221 1333445667789999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 174 qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~ 253 (271)
T PRK14238 174 QRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKI 253 (271)
T ss_pred HHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999999865 999999999999999999998
Q ss_pred ccccc
Q 040099 609 LENPY 613 (1236)
Q Consensus 609 ~~~~~ 613 (1236)
..++.
T Consensus 254 ~~~~~ 258 (271)
T PRK14238 254 FSNPS 258 (271)
T ss_pred HcCCC
Confidence 76543
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-41 Score=365.90 Aligned_cols=201 Identities=28% Similarity=0.529 Sum_probs=174.4
Q ss_pred EEEeEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
|+++||+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.. ....+|+++
T Consensus 2 l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-~~~~~~~~i 80 (218)
T cd03266 2 ITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVK-EPAEARRRL 80 (218)
T ss_pred eEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEccc-CHHHHHhhE
Confidence 689999999975311 159999999999999999999999999999999999999999999999999975 456778999
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|+||+|.+|.+ |++||+.-.. .+.+.++.+ |++........+||||||||++||||++++|++|
T Consensus 81 ~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~il 158 (218)
T cd03266 81 GFVSDSTGLYDRLTARENLEYFAGLYGLKGDELTARLEELADRL--GMEELLDRRVGGFSTGMRQKVAIARALVHDPPVL 158 (218)
T ss_pred EEecCCcccCcCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHHhhhhhhcCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999985 9999985211 112223322 5666677788899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 159 llDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (218)
T cd03266 159 LLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYEG 218 (218)
T ss_pred EEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeecC
Confidence 9999999999999999999999875 47899999999999865 9999999999998865
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=369.00 Aligned_cols=207 Identities=29% Similarity=0.456 Sum_probs=179.5
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .++++
T Consensus 1 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQS---HILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCCe---EEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 4789999999743 5899999999999999999999999999999999999999999999999998877654 46789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhhh--------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMANA--------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~~--------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
+|+||++.+|.. |++||+...... .+.+....++++........+||||||||++|||||+++|++|||||
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~illlDE 157 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELFPVLKEMLGRRGGDLSGGQQQQLAIARALVTRPKLLLLDE 157 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHHHhHHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEEecC
Confidence 999999999986 999999621111 11122222334455667778999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1161 ATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
||++||+.+...+.+.|++..+ ++|+|++||+++.+.. ||+|+++++|++++.|+++++.
T Consensus 158 Pt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 158 PTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred CcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 9999999999999999998754 6899999999999986 9999999999999999999983
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-41 Score=374.06 Aligned_cols=225 Identities=28% Similarity=0.499 Sum_probs=188.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 456 (1236)
-|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++... +.
T Consensus 6 ~i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGE---KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECC---eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 4899999999963 4699999999999999999999999999999999999763 489999999998765 44
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCC---C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA---T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~---~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
...++.++|++|++.+|+.|++||+.++.... . ++++.++++..++.+ ++.+..++.+.+||||||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWD-------EVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCch-------hhHHHhhcChhhCCHHHH
Confidence 56788899999999999899999999863211 1 122334444443322 233446677889999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++||||++.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 235 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQI 235 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHH
Confidence 9999999999999999999999999999999999999998777899999999999865 999999999999999999988
Q ss_pred cccccchhhh
Q 040099 609 LENPYGAYNR 618 (1236)
Q Consensus 609 ~~~~~~~y~~ 618 (1236)
..++...+.+
T Consensus 236 ~~~~~~~~~~ 245 (253)
T PRK14261 236 FENPHEELTE 245 (253)
T ss_pred HhCCCcHHHH
Confidence 7653333433
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-41 Score=376.41 Aligned_cols=216 Identities=29% Similarity=0.490 Sum_probs=185.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999742 24699999999999999999999999999999999999999999999999999888877888999
Q ss_pred EEEccCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 464 GLVSQEPV--LLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 464 ~~v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+|++|++. ++..|+++|+.++... ... +++.++++..++.++ ....+.+||||||||++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrl~la 154 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLER-----------ADYEPNALSGGQKQRVAIA 154 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchh-----------hhCCcccCCHHHHHHHHHH
Confidence 99999985 4456899999886422 122 233444444444333 3345568999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 155 ral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 155 GVLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999999999999998753 7899999999999878999999999999999999988664
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=372.67 Aligned_cols=210 Identities=30% Similarity=0.477 Sum_probs=180.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 82 (253)
T PRK14242 6 KMEARGLSFFYGDF---QALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVDV 82 (253)
T ss_pred EEEEeeeEEEECCe---eeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccccCH
Confidence 58999999999743 58999999999999999999999999999999999975 589999999999865 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh---h------chHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN---A------NGFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~---~------~~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||++.+|..|++||+.-... . .+.+..+-+ |+ +...+....+||||||||++|||
T Consensus 83 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~lar 162 (253)
T PRK14242 83 VELRRRVGMVFQKPNPFPKSIFENVAYGLRVNGVKDKAYLAERVERSLRHAALWDEVKDRLHESALGLSGGQQQRLCIAR 162 (253)
T ss_pred HHHhhcEEEEecCCCCCcCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHHHHH
Confidence 678899999999999999999999952111 1 111111111 22 33456778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|+|++.|+++++.+.
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 238 (253)
T PRK14242 163 ALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVGPTEQIFTR 238 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 999999999999999999999999999999988667899999999999865 999999999999999999999865
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-41 Score=346.56 Aligned_cols=220 Identities=27% Similarity=0.448 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~ 462 (1236)
-++++|++-.|.. .++|++|||++++||+++++||||+|||||++.|+|+.+|.+|+|.++|+|+...+++. .|..
T Consensus 3 mL~v~~l~~~YG~---~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~~r~r~G 79 (237)
T COG0410 3 MLEVENLSAGYGK---IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPHERARLG 79 (237)
T ss_pred ceeEEeEeecccc---eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHHHHHhCC
Confidence 3789999999963 57999999999999999999999999999999999999999999999999999998765 5778
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
|+||||.-.+|+. ||+||+.+|.....+++.. ....++-..-+| -+......++.+|||||+|.+||||||+.+
T Consensus 80 i~~VPegR~iF~~LTVeENL~~g~~~~~~~~~~----~~~~e~v~~lFP-~Lker~~~~aG~LSGGEQQMLAiaRALm~~ 154 (237)
T COG0410 80 IAYVPEGRRIFPRLTVEENLLLGAYARRDKEAQ----ERDLEEVYELFP-RLKERRNQRAGTLSGGEQQMLAIARALMSR 154 (237)
T ss_pred eEeCcccccchhhCcHHHHHhhhhhcccccccc----cccHHHHHHHCh-hHHHHhcCcccCCChHHHHHHHHHHHHhcC
Confidence 9999999999976 9999999874322211111 111233344556 467777888999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|++|+|||||.+|-|.-.+.|.+.|+++++ +.||++|-++..... .|||.+||++|+|+.+|+.+||.++
T Consensus 155 PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~~~eL~~~ 227 (237)
T COG0410 155 PKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGTAAELLAD 227 (237)
T ss_pred CCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecCHHHHhcC
Confidence 999999999999999999999999999974 569999999999875 5999999999999999999999876
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=365.65 Aligned_cols=197 Identities=36% Similarity=0.567 Sum_probs=170.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. .+++++
T Consensus 1 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~--~~~~i~ 75 (213)
T cd03259 1 LELKGLSKTYGS---VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVPP--ERRNIG 75 (213)
T ss_pred CeeeeeEEEeCC---eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCch--hhccEE
Confidence 468999999974 358999999999999999999999999999999999999999999999999976543 577899
Q ss_pred EEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||+|.+|. .|++||+.-... +.+++..+ |++........+||||||||++|||||+++|++||
T Consensus 76 ~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~~ll 153 (213)
T cd03259 76 MVFQDYALFPHLTVAENIAFGLKLRGVPKAEIRARVRELLELV--GLEGLLNRYPHELSGGQQQRVALARALAREPSLLL 153 (213)
T ss_pred EEcCchhhccCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CChhhhhcChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999998886 599999852111 11222222 55555666778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|||||++||+++...+.+.|++.. .++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~g 213 (213)
T cd03259 154 LDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQVG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999875 37899999999999865 9999999999998876
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-41 Score=381.13 Aligned_cols=215 Identities=33% Similarity=0.520 Sum_probs=184.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+.+|. +..+++|+||+|++||.++++|||||||||++++|.||..|++|+|.+||.|+..++++ ++.|
T Consensus 5 ~l~i~~v~k~yg---~~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp~--kR~i 79 (352)
T COG3842 5 ALEIRNVSKSFG---DFTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPPE--KRPI 79 (352)
T ss_pred eEEEEeeeeecC---CeeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh--hccc
Confidence 689999999997 34699999999999999999999999999999999999999999999999999999886 5789
Q ss_pred EEEcCCCCCChh-hHHHHHH---H------HhhhchHHHhhhh--chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIA---E------MANANGFISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~---~------~a~~~~~i~~lp~--Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
++|+|+..||+- ||+||++ + .+.....+..+-+ |++..-.....+|||||+||+||||||..+|++||
T Consensus 80 g~VFQ~YALFPHltV~~NVafGLk~~~~~~~~~i~~rv~e~L~lV~L~~~~~R~p~qLSGGQqQRVALARAL~~~P~vLL 159 (352)
T COG3842 80 GMVFQSYALFPHMTVEENVAFGLKVRKKLKKAEIKARVEEALELVGLEGFADRKPHQLSGGQQQRVALARALVPEPKVLL 159 (352)
T ss_pred ceeecCcccCCCCcHHHHhhhhhhhcCCCCHHHHHHHHHHHHHHcCchhhhhhChhhhChHHHHHHHHHHHhhcCcchhh
Confidence 999999999975 9999985 1 1111112211111 33334446678999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
||||-||||..-...++.-|++.. .|.|.|+|||+-+... -+|||+||++|+|...|+|+|+..++...|-.
T Consensus 160 LDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~gtP~eiY~~P~~~fVA 234 (352)
T COG3842 160 LDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQVGTPEEIYERPATRFVA 234 (352)
T ss_pred hcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeecCCHHHHhhCcchHHHH
Confidence 999999999999999999988764 3789999999999875 49999999999999999999999987766643
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=372.67 Aligned_cols=213 Identities=29% Similarity=0.478 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998877777788999
Q ss_pred EEccCCCC-CchhHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVL-LSSSIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l-~~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+ +..|++||+.++.... . ++++.++++..++.+ .......+||||||||++||||
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGe~qrv~la~a 148 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAH-----------LAGRDYPQLSGGEQQRVQLARV 148 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHh-----------HhcCCcccCCHHHHHHHHHHHH
Confidence 99999987 5679999998864211 1 123444444444433 3344556899999999999999
Q ss_pred hc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 538 MI------KDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 538 l~------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
|+ .+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 149 l~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 228 (258)
T PRK13548 149 LAQLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEV 228 (258)
T ss_pred HhcccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHH
Confidence 99 5999999999999999999999999999875 4789999999999986 4999999999999999998887
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
...
T Consensus 229 ~~~ 231 (258)
T PRK13548 229 LTP 231 (258)
T ss_pred hCh
Confidence 653
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=374.14 Aligned_cols=215 Identities=32% Similarity=0.537 Sum_probs=182.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC--------
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF-------- 454 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~-------- 454 (1236)
+.++++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...
T Consensus 4 ~~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 46999999999963 4699999999999999999999999999999999999999999999999988542
Q ss_pred -----CHHHHhcceEEEccCCCCCch-hHHHHHhcCCC---CCCH----HHHHHHHHHhccHHHHHhCCCCccccc-cCC
Q 040099 455 -----QLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT---HATK----EEIQAAAEAANASHFIKNLPQGLDTNV-GEH 520 (1236)
Q Consensus 455 -----~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~ 520 (1236)
....++++++||+|++.+|+. |++||+.++.. .... +++.++++.. |+.... ...
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~ 149 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV-----------GIDERAQGKY 149 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc-----------CCChhhhhCC
Confidence 134567899999999999975 99999986421 1122 2233333333 444332 456
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCE
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~ 598 (1236)
...||||||||++|||||+++|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~ 229 (257)
T PRK10619 150 PVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGK 229 (257)
T ss_pred cccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCE
Confidence 678999999999999999999999999999999999999999999998854 7999999999999986 99999999999
Q ss_pred EEEEeCccccccc
Q 040099 599 IVEKGTHSELLEN 611 (1236)
Q Consensus 599 i~~~g~~~~l~~~ 611 (1236)
+++.|+++++...
T Consensus 230 i~~~~~~~~~~~~ 242 (257)
T PRK10619 230 IEEEGAPEQLFGN 242 (257)
T ss_pred EEEeCCHHHhhhC
Confidence 9999999988754
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=377.49 Aligned_cols=213 Identities=31% Similarity=0.492 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhcc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~~ 462 (1236)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999963 46999999999999999999999999999999999999999999999999985 3344567889
Q ss_pred eEEEccCCC--CCchhHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 463 IGLVSQEPV--LLSSSIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 463 i~~v~Q~~~--l~~~ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
|+||+|++. ++..|+.+|+.++.. ..+.+ ++.++++..++.++ ......+||||||||++|
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgG~~qrl~l 147 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLVDAQHF-----------RHQPIQCLSHGQKKRVAI 147 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHhH-----------hcCCchhCCHHHHHHHHH
Confidence 999999985 567799999987421 12222 23344444444433 234456899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 148 araL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 148 AGALVLQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999999875 47899999999999865 999999999999999999887654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-41 Score=371.23 Aligned_cols=212 Identities=26% Similarity=0.472 Sum_probs=180.1
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 463 (1236)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 77 (230)
T TIGR03410 1 LEVSNLNVYYGQ---SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPHERARAGI 77 (230)
T ss_pred CEEEeEEEEeCC---eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHHHHHHhCe
Confidence 478999999963 46999999999999999999999999999999999999999999999999998776554 46789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCCC--HH-HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHAT--KE-EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~~--~~-~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|++|++.+|+. |++||+.++..... .+ ...++++.. ++++........+||||||||++|||||+
T Consensus 78 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~----------~~l~~~~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 78 AYVPQGREIFPRLTVEENLLTGLAALPRRSRKIPDEIYELF----------PVLKEMLGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred EEeccCCcccCCCcHHHHHHHHHHhcCcchHHHHHHHHHHH----------HhHHHHhhCChhhCCHHHHHHHHHHHHHh
Confidence 999999999976 99999987643211 11 112222222 12333455666789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
++|+++||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~~~~~~~ 220 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASGAGDELD 220 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHcC
Confidence 99999999999999999999999999998764 7899999999999975 9999999999999999998873
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-41 Score=353.74 Aligned_cols=178 Identities=35% Similarity=0.657 Sum_probs=164.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++. +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ...+++.++
T Consensus 1 i~~~~~~~~~~~~-~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 78 (178)
T cd03247 1 LSINNVSFSYPEQ-EQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-EKALSSLIS 78 (178)
T ss_pred CEEEEEEEEeCCC-CccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-HHHHHhhEE
Confidence 4789999999742 23699999999999999999999999999999999999999999999999988665 566788999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+ +.+||||||||++||||++++|++
T Consensus 79 ~~~q~~~~~~~tv~~~i---------------------------------------~~~LS~G~~qrv~laral~~~p~~ 119 (178)
T cd03247 79 VLNQRPYLFDTTLRNNL---------------------------------------GRRFSGGERQRLALARILLQDAPI 119 (178)
T ss_pred EEccCCeeecccHHHhh---------------------------------------cccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 358999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+..||++++|++|++++.|
T Consensus 120 lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~i~~~~ 178 (178)
T cd03247 120 VLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIEHMDKILFLENGKIIMQG 178 (178)
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999999887789999999999999889999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-41 Score=370.99 Aligned_cols=216 Identities=31% Similarity=0.513 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC------CCCHHH
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK------EFQLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~------~~~~~~ 458 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++. ..+...
T Consensus 3 l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 3 IQLNGINCFYGA---HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEeeEEEECC---eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 789999999963 46999999999999999999999999999999999999999999999999873 123456
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+|++|+|++|++.+|.. |++|||.++.. ....++..+ .+.+++..+ |++........+||||||||++|
T Consensus 80 ~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~l 152 (242)
T PRK11124 80 LRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALA-----RAEKLLERL--RLKPYADRFPLHLSGGQQQRVAI 152 (242)
T ss_pred HHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHH-----HHHHHHHHc--CChhhhhCChhhCCHHHHHHHHH
Confidence 78899999999999875 99999975311 112222111 123344444 55555566667999999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||++.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 153 aral~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~ 230 (242)
T PRK11124 153 ARALMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQ 230 (242)
T ss_pred HHHHhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcC
Confidence 9999999999999999999999999999999998754 7999999999999865 99999999999999999887654
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-41 Score=387.14 Aligned_cols=213 Identities=27% Similarity=0.436 Sum_probs=184.6
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC--cEEEECCeecccCChHHH
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS--GHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~--G~I~idG~di~~i~~~~l 1085 (1236)
.|.|+++||+++|++. .+|+|+||+|++||+++|+||||||||||+++|.|+++|++ |+|.+||.++...++ .
T Consensus 3 ~~~l~~~~l~~~~~~~---~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~--~ 77 (362)
T TIGR03258 3 CGGIRIDHLRVAYGAN---TVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP--H 77 (362)
T ss_pred ceEEEEEEEEEEECCe---EEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH--H
Confidence 4679999999999743 58999999999999999999999999999999999999999 999999999987665 3
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
+++|++|+|++.+|.. |++|||.-... +.+.++.+ |++........+||||||||+||||||+++
T Consensus 78 ~r~ig~vfQ~~~l~p~~tv~enl~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~~~~~~LSgGq~QRvaLARAL~~~ 155 (362)
T TIGR03258 78 KRGLALLFQNYALFPHLKVEDNVAFGLRAQKMPKADIAERVADALKLV--GLGDAAAHLPAQLSGGMQQRIAIARAIAIE 155 (362)
T ss_pred HCCEEEEECCcccCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHhc--CCCchhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 6789999999999976 99999961111 11122211 555556677789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV---DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~---~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|+||++|++++.|+++++.+++...|
T Consensus 156 P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~~~~~~~~p~~~~ 234 (362)
T TIGR03258 156 PDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGEPQALYDAPADGF 234 (362)
T ss_pred CCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcCcHH
Confidence 999999999999999999999999988754 6799999999999865 99999999999999999999998755444
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-41 Score=365.45 Aligned_cols=201 Identities=39% Similarity=0.653 Sum_probs=170.8
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++|++++|++. ++++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++|+|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 478999999642 2469999999999999999999999999999999999999999999999999987777778889999
Q ss_pred EccCCC--CCchhHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 466 VSQEPV--LLSSSIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 466 v~Q~~~--l~~~ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|++. +++.|++||+.++... ... +++.+.++..++ +.........||||||||++||||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LSgG~~qrv~lara 148 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELVGL-----------EGLRDRSPFTLSGGQKQRVAIAGV 148 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHHHHHH
Confidence 999983 5678999999875321 122 223334444443 333445557899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCE
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~ 598 (1236)
|+++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|+
T Consensus 149 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 149 LAMDPDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999999999999998854 7899999999999977 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-41 Score=365.37 Aligned_cols=202 Identities=32% Similarity=0.536 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r~ 461 (1236)
++++|++++|+++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4789999999632 469999999999999999999999999999999999999999999999999977654 34678
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
.++|++|++.+|.. |++||+.++.. ..+. +++.++++..++.+.. .....+||||||||++|
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~qrv~l 147 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELVGLSHKH-----------RALPAELSGGEQQRVAI 147 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHh-----------hCChhhcCHHHHHHHHH
Confidence 89999999999874 99999987532 1122 2344455555554433 33445899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
||||+.+|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++
T Consensus 148 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 148 ARAIVNSPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999999999874 47899999999999875 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-41 Score=373.27 Aligned_cols=219 Identities=32% Similarity=0.526 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 456 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGE---KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCC---ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 3899999999963 4699999999999999999999999999999999999984 899999999988653 33
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC---CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+++.++|++|++.+|..|++||+.++... ... +++.++++..++.+.+ ++..+..+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~Gq~ 152 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEV-------KSELNKPGTRLSGGQQ 152 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchh-------HHHHhCChhhcCHHHH
Confidence 4567889999999999999999999875311 111 2344445555543322 2335667789999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|++|++++.|+++++
T Consensus 153 qr~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14262 153 QRLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREI 232 (250)
T ss_pred HHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHH
Confidence 999999999999999999999999999999999999999877899999999999875 4999999999999999999988
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
.+.+
T Consensus 233 ~~~~ 236 (250)
T PRK14262 233 VERP 236 (250)
T ss_pred HhCC
Confidence 7653
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-41 Score=382.83 Aligned_cols=217 Identities=26% Similarity=0.460 Sum_probs=180.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ +++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++... ....|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999963 4699999999999999999999999999999999999999999999999998654 35568899
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||++|++.++. .|++||+.+... ..+.++..+.++ +.++.+ |++........+||||||||++|||||+.
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~ 152 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADVRVALLSGGMKRRLTLARALIN 152 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHC--CChhHhcCchhhCCHHHHHHHHHHHHHhc
Confidence 99999998885 599999975211 123332222111 122222 33333344456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 153 ~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 153 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999885 47899999999999865 999999999999999999998654
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.55 Aligned_cols=218 Identities=31% Similarity=0.522 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecC-CCCHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLK-EFQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~-~~~~~ 457 (1236)
.++++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4889999999963 4699999999999999999999999999999999999986 5999999999985 44566
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.+|+.++|++|++.+|+.|++||+.++... . .. +++.++++..++.+.+ .+.....+.+|||||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEV-------KDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhh-------hHHhhcCcccCCHHHHH
Confidence 778899999999999999999999876321 1 11 2334444444443322 23445667789999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 232 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIF 232 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999998777999999999999876 9999999999999999988876
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
.+
T Consensus 233 ~~ 234 (249)
T PRK14253 233 SN 234 (249)
T ss_pred cC
Confidence 54
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=375.40 Aligned_cols=209 Identities=28% Similarity=0.493 Sum_probs=179.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|+.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++.+.+...+|+++
T Consensus 4 ~l~~~~l~~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i 81 (274)
T PRK13647 4 IIEVEDLHFRYKDG--TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAENEKWVRSKV 81 (274)
T ss_pred eEEEEEEEEEeCCC--CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHhhE
Confidence 48899999999732 3599999999999999999999999999999999999999999999999999888888889999
Q ss_pred EEEcCCC--CCChhhHHHHHHHHh---hh-----chHHHh-hhh-chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1090 GVVSQEP--VLFSDTIRANIAEMA---NA-----NGFISG-LQE-GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~gTIreNL~~~a---~~-----~~~i~~-lp~-Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+||||+| .+|..|++||+.-.. +. .+.+.. +.. |+..........||||||||++|||||+++|++||
T Consensus 82 ~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~~~LSgG~~qrv~laraL~~~p~lll 161 (274)
T PRK13647 82 GLVFQDPDDQVFSSTVWDDVAFGPVNMGLDKDEVERRVEEALKAVRMWDFRDKPPYHLSYGQKKRVAIAGVLAMDPDVIV 161 (274)
T ss_pred EEEecChhhhhccCcHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998 688899999995211 11 111111 111 44444555667899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHh
Q 040099 1158 LDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.
T Consensus 162 lDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 226 (274)
T PRK13647 162 LDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGDKSLLT 226 (274)
T ss_pred EECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHhc
Confidence 999999999999999999999875 4789999999999985 59999999999999999987653
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-41 Score=376.58 Aligned_cols=213 Identities=31% Similarity=0.445 Sum_probs=179.3
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----hc
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL----RQ 1087 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l----R~ 1087 (1236)
.++||++.|.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ ++
T Consensus 26 ~~~~~~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~ 102 (269)
T cd03294 26 SKEEILKKTGQ---TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRK 102 (269)
T ss_pred hhhhhhhhcCC---ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcC
Confidence 35577777753 358999999999999999999999999999999999999999999999999988765543 46
Q ss_pred ceEEEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+++|+||++.+|. .|++||+.-... +.+.++.+ |++..+.....+||||||||++|||||+++|+
T Consensus 103 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrv~lAral~~~p~ 180 (269)
T cd03294 103 KISMVFQSFALLPHRTVLENVAFGLEVQGVPRAEREERAAEALELV--GLEGWEHKYPDELSGGMQQRVGLARALAVDPD 180 (269)
T ss_pred cEEEEecCcccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCHhHhhCCcccCCHHHHHHHHHHHHHhcCCC
Confidence 8999999999885 699999852111 11222222 45555566677899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
||||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.+...|.+
T Consensus 181 illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~ 258 (269)
T cd03294 181 ILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVGTPEEILTNPANDYVR 258 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHHhCcCcHHHH
Confidence 9999999999999999999999998753 7899999999999865 9999999999999999999998765544543
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-41 Score=341.22 Aligned_cols=213 Identities=30% Similarity=0.474 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
+++.+++++|++ ...+++||||+++.||++||.|||||||||++++|..++.|++|.|++||.|.... +...|++||
T Consensus 2 l~v~~l~K~y~~--~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~-p~~vrr~IG 78 (245)
T COG4555 2 LEVTDLTKSYGS--KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRD-PSFVRRKIG 78 (245)
T ss_pred eeeeehhhhccC--HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccC-hHHHhhhcc
Confidence 678999999974 34599999999999999999999999999999999999999999999999998664 456788999
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
+++-+.-|+.. |++|||.|... +.+ +.++.+..+.. +++..+..+..+||-|+||||+||||
T Consensus 79 Vl~~e~glY~RlT~rEnl~~Fa~L~~l~~~~~kari~~l~k~l-----------~l~~~~~rRv~~~S~G~kqkV~iARA 147 (245)
T COG4555 79 VLFGERGLYARLTARENLKYFARLNGLSRKEIKARIAELSKRL-----------QLLEYLDRRVGEFSTGMKQKVAIARA 147 (245)
T ss_pred eecCCcChhhhhhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHh-----------ChHHHHHHHHhhhchhhHHHHHHHHH
Confidence 99987778765 99999997421 112 22333333333 44444445556899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|++||++++||||||+||..+.+.+++.+.+++. |+++|+.||.++.++. ||+++++++|+++..|+.+++.++
T Consensus 148 lvh~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~~l~~r 223 (245)
T COG4555 148 LVHDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIEALDAR 223 (245)
T ss_pred HhcCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHHHHHHH
Confidence 9999999999999999999999999999999875 8999999999999985 999999999999999999888654
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=371.30 Aligned_cols=217 Identities=24% Similarity=0.448 Sum_probs=185.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-Hhcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i 463 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999963 46999999999999999999999999999999999999999999999999998776544 56789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|++|++.+|.. |++||+.++.. ..+.++.. ..+.+.+..+ |++.........||||||||++||||++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~ 153 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQRE-----DRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALA 153 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHH-----HHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHh
Confidence 999999998875 99999987532 11222211 1223455555 5666667777899999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++|++|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||++++|++|++++.|++++++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 154 ANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 9999999999999999999999999998875 47899999999987755 999999999999999999888653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-41 Score=358.17 Aligned_cols=204 Identities=28% Similarity=0.498 Sum_probs=171.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++|++|+|.++ +||+||||+|++|+.+||+||||||||||+++++|+.+|++|+|.++|.++++... +.+|
T Consensus 4 ~i~v~nl~v~y~~~---~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~---~~~I 77 (254)
T COG1121 4 MIEVENLTVSYGNR---PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRK---RLRI 77 (254)
T ss_pred EEEEeeeEEEECCE---eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEcccccccccc---CCeE
Confidence 58999999999854 49999999999999999999999999999999999999999999999998876543 5789
Q ss_pred EEEcCCC---CCChhhHHHHHHH----------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1090 GVVSQEP---VLFSDTIRANIAE----------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1090 ~~V~Qdp---~LF~gTIreNL~~----------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
|||||.. .-|+-||+|=+.- ...+.+.++.. |+...-...-..|||||+||+.|||||+
T Consensus 78 gYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~V--gm~~~~~r~i~~LSGGQ~QRV~lARAL~ 155 (254)
T COG1121 78 GYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERV--GMEDLRDRQIGELSGGQKQRVLLARALA 155 (254)
T ss_pred EEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHc--CchhhhCCcccccCcHHHHHHHHHHHhc
Confidence 9999954 4578899997640 01111111111 2222233444579999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|++|+|||||+++|+.++..+.+.|+++.+ ||||++|+|+++.+.. +|+|+.| |+++...|++++.+..
T Consensus 156 ~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~L-n~~~~~~G~~~~~~~~ 228 (254)
T COG1121 156 QNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICL-NRHLIASGPPEEVLTE 228 (254)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEE-cCeeEeccChhhccCH
Confidence 99999999999999999999999999999864 8999999999999965 9999999 5788999999998874
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-41 Score=366.57 Aligned_cols=198 Identities=30% Similarity=0.503 Sum_probs=167.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36899999963 46999999999999999999999999999999999999999999999998764 46778999
Q ss_pred EccCCCC---CchhHHHHHhcCCCCC----------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 466 VSQEPVL---LSSSIRDNIAYGKTHA----------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 466 v~Q~~~l---~~~ti~~ni~~g~~~~----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|+|++.+ ++.|++||+.++.... ..+++.++++..++.++.. ....+||||||||+
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSgG~~qrv 141 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSELAD-----------RQIGELSGGQQQRV 141 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHHHh-----------CCcccCCHHHHHHH
Confidence 9999876 5679999998864311 1234455555555554433 34468999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++| +++.|
T Consensus 142 ~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 142 LLARALVQDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999999999999875 57899999999999865 9999999886 55544
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=372.15 Aligned_cols=212 Identities=30% Similarity=0.483 Sum_probs=182.8
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--C
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--L 1080 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i 1080 (1236)
.+.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++.. .
T Consensus 11 ~~~l~~~~l~~~~~~~---~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~~ 87 (260)
T PRK10744 11 PSKIQVRNLNFYYGKF---HALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPKQ 87 (260)
T ss_pred CceEEEEEEEEEeCCe---EEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEcccccc
Confidence 4579999999999743 58999999999999999999999999999999999986 589999999999863 4
Q ss_pred ChHHHhcceEEEcCCCCCChhhHHHHHHHHhh-------------hchHHHhh--hhchhhhhcCCCCCCChhHHHHHHH
Q 040099 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIAEMAN-------------ANGFISGL--QEGYDTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1081 ~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~-------------~~~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaL 1145 (1236)
+...+|++++|+||+|.+|+.|++||+..... +.+.++.+ +.++....++...+||||||||++|
T Consensus 88 ~~~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 167 (260)
T PRK10744 88 DIALLRAKVGMVFQKPTPFPMSIYDNIAFGVRLFEKLSRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCI 167 (260)
T ss_pred chHHHhcceEEEecCCccCcCcHHHHHhhhHhhcCCCCHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHHHHHHHH
Confidence 56778999999999999999999999852111 11111111 1122345677788999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||+++|+||||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 168 aral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 245 (260)
T PRK10744 168 ARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFGNTDTIFTK 245 (260)
T ss_pred HHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 99999999999999999999999999999999998777899999999999865 999999999999999999999875
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=382.59 Aligned_cols=220 Identities=26% Similarity=0.410 Sum_probs=184.8
Q ss_pred cEEEeEEEEECCCCC----------CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1010 EVQFLRVSFKYPTRP----------HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~----------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
-++++|++++|+.+. ...+++||||+|++||++||||+||||||||+++|+|+++|++|+|++||.|+.+
T Consensus 8 ~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~i~~ 87 (331)
T PRK15079 8 LLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKDLLG 87 (331)
T ss_pred eEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEECCc
Confidence 489999999996421 2468999999999999999999999999999999999999999999999999988
Q ss_pred CChH---HHhcceEEEcCCC--CCC-hhhHHHHHHHHhhh----------chHHHhhh--hchh-hhhcCCCCCCChhHH
Q 040099 1080 LQVK---WLRQQMGVVSQEP--VLF-SDTIRANIAEMANA----------NGFISGLQ--EGYD-TLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1080 i~~~---~lR~~i~~V~Qdp--~LF-~gTIreNL~~~a~~----------~~~i~~lp--~Gld-t~vge~G~~LSGGQr 1140 (1236)
++.. .+|++|+||+|+| .|| ..||.|||.+.... .+.+..+- -|++ ........+||||||
T Consensus 88 ~~~~~~~~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~vgl~~~~~~~~p~~LSgG~~ 167 (331)
T PRK15079 88 MKDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKLSRQEVKDRVKAMMLKVGLLPNLINRYPHEFSGGQC 167 (331)
T ss_pred CCHHHHHHHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHhcCCcccCCHHHH
Confidence 8754 4678999999999 477 47999998632111 11111111 1342 234667789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 040099 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1141 QRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
||++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+++
T Consensus 168 QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive~g~~~ 247 (331)
T PRK15079 168 QRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVELGTYD 247 (331)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHH
Confidence 999999999999999999999999999999999999998754 7899999999999976 9999999999999999999
Q ss_pred HHhhccCcccHH
Q 040099 1218 SLISTKNGIYTS 1229 (1236)
Q Consensus 1218 eLl~~~~g~y~~ 1229 (1236)
++++++...|.+
T Consensus 248 ~i~~~~~~py~~ 259 (331)
T PRK15079 248 EVYHNPLHPYTK 259 (331)
T ss_pred HHHcCCCCHHHH
Confidence 998875555655
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=371.97 Aligned_cols=219 Identities=33% Similarity=0.504 Sum_probs=186.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 456 (1236)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 5899999999963 4699999999999999999999999999999999999875 799999999998643 34
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+++.++|++|++.+|+.|++||+.++... . .. +++.++++.+++.+.+ ..........||||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEV-------KDDLKKSALKLSGGQQ 153 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHHH
Confidence 5668889999999999999999999876321 1 11 2344555555543322 2234556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++||||++.+|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998777999999999999865 999999999999999999998
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
...+
T Consensus 234 ~~~~ 237 (251)
T PRK14270 234 FLEP 237 (251)
T ss_pred hcCC
Confidence 7653
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=363.22 Aligned_cols=210 Identities=30% Similarity=0.488 Sum_probs=186.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH----HHHhc
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL----KWIRE 461 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~r~ 461 (1236)
.+.|+.|+|+.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. ...|+
T Consensus 2 ~~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 79 (218)
T cd03290 2 QVTNGYFSWGSG--LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRY 79 (218)
T ss_pred eeeeeEEecCCC--CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcc
Confidence 578999999743 569999999999999999999999999999999999999999999999998866542 23567
Q ss_pred ceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
.++|++|++.+|+.|++||+.++.+ ...++..++++..++.+++..+|.|+++.++....+||||||||++||||++.+
T Consensus 80 ~i~~~~q~~~~~~~t~~~nl~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qrv~laral~~~ 158 (218)
T cd03290 80 SVAYAAQKPWLLNATVEENITFGSP-FNKQRYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQRICVARALYQN 158 (218)
T ss_pred eEEEEcCCCccccccHHHHHhhcCc-CCHHHHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHHHHHHHHHhhC
Confidence 8999999999998999999998754 345566788888888888999999999999999999999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHH--HHHHHc-cCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 542 PRILLLDEATSALDSESGRMVQE--ALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~--~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
|++|||||||++||+.+...+.+ .++.+. .++|+|++||+++.+..||++++|++|+
T Consensus 159 p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~G~ 218 (218)
T cd03290 159 TNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLPHADWIIAMKDGS 218 (218)
T ss_pred CCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHhhCCEEEEecCCC
Confidence 99999999999999999998887 455543 3689999999999998899999999884
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-41 Score=368.23 Aligned_cols=212 Identities=34% Similarity=0.520 Sum_probs=174.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH---HHHh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL---KWIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~---~~~r 460 (1236)
|+++||+++|++.+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999996321 1269999999999999999999999999999999999999999999999999987663 5678
Q ss_pred cceEEEccCC--CCC-chhHHHHHhcCCC----CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEP--VLL-SSSIRDNIAYGKT----HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~--~l~-~~ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRi 532 (1236)
++++|++|++ .++ ..|++||+.++.. ...++....++ .+.+..+ |+. ........+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv 154 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAV-----LLLLVGV--GLPEEVLNRYPHELSGGQRQRV 154 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHH-----HHHHHHC--CCChhHhhCCchhcCHHHHHHH
Confidence 8999999998 344 4699999986421 11111111111 1233333 443 345667789999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEe
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g 603 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 155 ~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 155 AIARALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HHHHHHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 999999999999999999999999999999999998864 789999999999987 59999999999998764
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=366.35 Aligned_cols=208 Identities=28% Similarity=0.421 Sum_probs=175.5
Q ss_pred cEEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---H
Q 040099 384 DIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---I 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~ 459 (1236)
-|+++|++++|++... .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... .
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999974211 35999999999999999999999999999999999999999999999999998776543 2
Q ss_pred -hcceEEEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 460 -REKIGLVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 460 -r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
++.++|++|++.+|.. |++||+.++.. ... .+++.++++..++.+++.+ ....||||||||
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~LS~Ge~qr 154 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQLGLGKRLDH-----------LPAQLSGGEQQR 154 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCHhHhhC-----------ChhhCCHHHHHH
Confidence 3579999999998875 99999986421 111 2344555555555544443 345899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|+++++
T Consensus 155 l~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 155 VALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999999999998743 7899999999999888999999999999764
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-40 Score=384.17 Aligned_cols=228 Identities=23% Similarity=0.372 Sum_probs=186.6
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC----CCCcEEEECCeecCCCCHHHH
Q 040099 385 IELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD----PQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~----~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
|+++|++++|+.+ +...+|+||||+|++||++||+|+||||||||+++|+|+.+ |++|+|.++|+++...+.+.+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 7999999999632 22469999999999999999999999999999999999986 589999999999988776554
Q ss_pred h----cceEEEccCCC--CCc-hhHHHHHhcCCC---C-----CC----HHHHHHHHHHhccHHHHHhCCCCccccccCC
Q 040099 460 R----EKIGLVSQEPV--LLS-SSIRDNIAYGKT---H-----AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520 (1236)
Q Consensus 460 r----~~i~~v~Q~~~--l~~-~ti~~ni~~g~~---~-----~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~ 520 (1236)
+ +.|+||+|++. ++. .||.+|+..... . .. .+++.++++..++.+.. ......
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~--------~~~~~~ 155 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHK--------DAMRSF 155 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChH--------HHHhCC
Confidence 3 47999999986 333 489999864210 0 01 12344555555553211 123445
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECC
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQG 597 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G 597 (1236)
+.+||||||||++|||||+.+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|
T Consensus 156 p~~LSgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G 235 (330)
T PRK15093 156 PYELTEGECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCG 235 (330)
T ss_pred chhCCHHHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 569999999999999999999999999999999999999999999998864 7899999999999965 9999999999
Q ss_pred EEEEEeCcccccccccchhhhhH
Q 040099 598 KIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 598 ~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+|++.|+.+++..++...|.+.+
T Consensus 236 ~ive~g~~~~i~~~p~~~y~~~l 258 (330)
T PRK15093 236 QTVETAPSKELVTTPHHPYTQAL 258 (330)
T ss_pred EEEEECCHHHHHhCCCCHHHHHH
Confidence 99999999999887667776643
|
|
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.82 Aligned_cols=211 Identities=27% Similarity=0.447 Sum_probs=181.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|+. ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 5 ~l~~~~l~~~~~~--~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~ 82 (283)
T PRK13636 5 ILKVEELNYNYSD--GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRKGLMKLRE 82 (283)
T ss_pred eEEEEeEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcchHHHHHh
Confidence 4899999999963 235999999999999999999999999999999999999999999999999984 344667899
Q ss_pred ceEEEcCCC--CCChhhHHHHHHHHh---hh-----chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1088 QMGVVSQEP--VLFSDTIRANIAEMA---NA-----NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1088 ~i~~V~Qdp--~LF~gTIreNL~~~a---~~-----~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+++|+||+| .+|+.|++||+.-.. +. .+.+..+= -|++........+||||||||++|||||+.+|+|
T Consensus 83 ~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrl~laraL~~~p~l 162 (283)
T PRK13636 83 SVGMVFQDPDNQLFSASVYQDVSFGAVNLKLPEDEVRKRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKV 162 (283)
T ss_pred hEEEEecCcchhhccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHCCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 999999998 578899999995211 10 01111111 1555556677889999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 163 LilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~ 232 (283)
T PRK13636 163 LVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 232 (283)
T ss_pred EEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999998764 789999999999997 5999999999999999999998764
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=366.95 Aligned_cols=204 Identities=32% Similarity=0.478 Sum_probs=176.1
Q ss_pred cEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---H
Q 040099 1010 EVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---L 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---l 1085 (1236)
-++++||+++|+.+. ..++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.++..++... +
T Consensus 5 ~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~ 84 (233)
T PRK11629 5 LLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAKAEL 84 (233)
T ss_pred eEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHHHHH
Confidence 389999999997432 136999999999999999999999999999999999999999999999999998887654 3
Q ss_pred h-cceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1086 R-QQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1086 R-~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
| +.++|+||+|.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++||||++.
T Consensus 85 ~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgG~~qrl~la~al~~ 162 (233)
T PRK11629 85 RNQKLGFIYQFHHLLPDFTALENVAMPLLIGKKKPAEINSRALEMLAAV--GLEHRANHRPSELSGGERQRVAIARALVN 162 (233)
T ss_pred HhccEEEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhc
Confidence 3 679999999998875 9999985211 111222222 56556667778999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt 1215 (1236)
+|+||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+..+|++++|++|+|++.|+
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~~~~~~l~~G~i~~~~~ 228 (233)
T PRK11629 163 NPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRMSRQLEMRDGRLTAELS 228 (233)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhCEEEEEECCEEEEEec
Confidence 999999999999999999999999999874 4789999999999999999999999999998875
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=371.50 Aligned_cols=218 Identities=32% Similarity=0.543 Sum_probs=185.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-----AGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 456 (1236)
.|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHK---HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECC---eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 5899999999963 46999999999999999999999999999999999999997 6999999999864 344
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC--C-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+|+.++||+|++.+|+.|++||+.++... . .. +.+.++++..++.++ +.+.....+.+||||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~Gq~ 153 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDE-------VKDNLHKSGLALSGGQQ 153 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchh-------hhhHhhCCcccCCHHHH
Confidence 5678899999999999989999999986321 1 11 223333444444332 23345677889999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+.+++
T Consensus 154 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 233 (251)
T PRK14249 154 QRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEI 233 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999988668999999999999876 899999999999999999988
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
...
T Consensus 234 ~~~ 236 (251)
T PRK14249 234 FSR 236 (251)
T ss_pred HhC
Confidence 654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=374.11 Aligned_cols=219 Identities=26% Similarity=0.500 Sum_probs=186.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCCC-HH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEFQ-LK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~~-~~ 457 (1236)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999963 4699999999999999999999999999999999999986 7999999999987653 34
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCC---CCCHHHHHH----HHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKT---HATKEEIQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~---~~~~~~~~~----~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.++++++|++|++.+|+.|++||+.++.. ..+.++..+ .++..++. ..+++.....+.+|||||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~l~~~~~~LSgGq~q 170 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLW-------DAVKDRLSDSPFRLSGGQQQ 170 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCC-------chhhhHhhCCcccCCHHHHH
Confidence 67889999999999999999999997632 123333322 22223222 22234456677899999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++.
T Consensus 171 rl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~ 250 (276)
T PRK14271 171 LLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLF 250 (276)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHH
Confidence 999999999999999999999999999999999999988767899999999999865 9999999999999999999997
Q ss_pred ccc
Q 040099 610 ENP 612 (1236)
Q Consensus 610 ~~~ 612 (1236)
+.+
T Consensus 251 ~~~ 253 (276)
T PRK14271 251 SSP 253 (276)
T ss_pred hCc
Confidence 653
|
|
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=385.15 Aligned_cols=211 Identities=32% Similarity=0.500 Sum_probs=181.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+...+. .|+++
T Consensus 2 ~L~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 76 (353)
T PRK10851 2 SIEIANIKKSFGR---TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLHA--RDRKV 76 (353)
T ss_pred EEEEEEEEEEeCC---eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH--HHCCE
Confidence 3789999999974 358999999999999999999999999999999999999999999999999987654 46789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh----------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN----------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~----------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
+||+|++.+|+. |++||+.-... +.+..+.+ |++.........||||||||++|||||+++
T Consensus 77 ~~v~Q~~~l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalArAL~~~ 154 (353)
T PRK10851 77 GFVFQHYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMV--QLAHLADRYPAQLSGGQKQRVALARALAVE 154 (353)
T ss_pred EEEecCcccCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHhcC
Confidence 999999999975 99999962111 11112211 444445567789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++...|
T Consensus 155 P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g~~~~i~~~p~~~~ 232 (353)
T PRK10851 155 PQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAGTPDQVWREPATRF 232 (353)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 999999999999999999999999998764 6899999999999865 99999999999999999999988754444
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=375.65 Aligned_cols=213 Identities=26% Similarity=0.433 Sum_probs=184.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|+.....++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~~~~i 83 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENVWNLRRKI 83 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCHHHHhcce
Confidence 48999999999753334589999999999999999999999999999999999999999999999999887778889999
Q ss_pred EEEcCCC--CCChhhHHHHHHHHhh---h-----chHHHhhhh--chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1090 GVVSQEP--VLFSDTIRANIAEMAN---A-----NGFISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~gTIreNL~~~a~---~-----~~~i~~lp~--Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+|+||+| .++..|+.|||..... . .+.+..+-+ |+..........||||||||++|||||+++|+|||
T Consensus 84 ~~v~q~~~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~lAraL~~~p~lll 163 (277)
T PRK13642 84 GMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKRVDEALLAVNMLDFKTREPARLSGGQKQRVAVAGIIALRPEIII 163 (277)
T ss_pred EEEEECHHHhhccCCHHHHHHhhHHHcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998 4778899999952111 1 111111111 45445566778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|+++++++.
T Consensus 164 lDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (277)
T PRK13642 164 LDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAASSDRILVMKAGEIIKEAAPSELFAT 230 (277)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999998754 7899999999999988999999999999999999999864
|
|
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-41 Score=364.48 Aligned_cols=197 Identities=34% Similarity=0.547 Sum_probs=168.5
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~lR~ 1087 (1236)
++++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+.. .+|+
T Consensus 2 l~~~~l~~~~~~~-~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (216)
T TIGR00960 2 IRFEQVSKAYPGG-HQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGREIPFLRR 80 (216)
T ss_pred eEEEEEEEEecCC-CeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhHHHHHHH
Confidence 6899999999742 23599999999999999999999999999999999999999999999999999876543 4788
Q ss_pred ceEEEcCCCCCCh-hhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+++|+||+|.+|. .|++||+.... .+.+.++.+ |++........+||||||||++|||||+++|+
T Consensus 81 ~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p~ 158 (216)
T TIGR00960 81 HIGMVFQDHRLLSDRTVYDNVAFPLRIIGVPPRDANERVSAALEKV--GLEGKAHALPMQLSGGEQQRVAIARAIVHKPP 158 (216)
T ss_pred hceEEecCccccccccHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999887 59999985211 111222221 45445556667899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
||||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|+|
T Consensus 159 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 159 LLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999998874 47899999999999975 999999999975
|
|
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=370.87 Aligned_cols=209 Identities=33% Similarity=0.529 Sum_probs=181.5
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---------
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ--------- 1081 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~--------- 1081 (1236)
|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++
T Consensus 1 i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 77 (252)
T TIGR03005 1 VRFSDVTKRFGIL---TVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPA 77 (252)
T ss_pred CEEEEEEEEeCCe---eEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccccccccccccc
Confidence 5789999999743 5899999999999999999999999999999999999999999999999987653
Q ss_pred ----hHHHhcceEEEcCCCCCCh-hhHHHHHHHHh-------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHH
Q 040099 1082 ----VKWLRQQMGVVSQEPVLFS-DTIRANIAEMA-------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1082 ----~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a-------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRl 1143 (1236)
...+|++++|++|++.+|. .|++||+.... .+.+.+..+ |++.........||||||||+
T Consensus 78 ~~~~~~~~~~~i~~v~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv 155 (252)
T TIGR03005 78 DEKHLRQMRNKIGMVFQSFNLFPHKTVLDNVTEAPVLVLGMARAEAEKRAMELLDMV--GLADKADHMPAQLSGGQQQRV 155 (252)
T ss_pred chhHHHHHhhCeEEEecCcccCCCCcHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhHhhcChhhcCHHHHHHH
Confidence 2467889999999999885 79999995210 112222222 566666777889999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+|||||+++|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+.. ||++++|++|++++.|+++++.
T Consensus 156 ~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~ 235 (252)
T TIGR03005 156 AIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQGKPDEIF 235 (252)
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999964 9999999999999999999998
Q ss_pred hccC
Q 040099 1221 STKN 1224 (1236)
Q Consensus 1221 ~~~~ 1224 (1236)
+.+.
T Consensus 236 ~~~~ 239 (252)
T TIGR03005 236 RQPK 239 (252)
T ss_pred cCCC
Confidence 7543
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=380.53 Aligned_cols=218 Identities=30% Similarity=0.484 Sum_probs=183.4
Q ss_pred cEEEeEEEEECCCCC-------CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh
Q 040099 1010 EVQFLRVSFKYPTRP-------HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~-------~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~ 1082 (1236)
-|+++|++++|+.+. ...+|+||||+|++||++||||+||||||||+++|.|+++|++|+|.+||.|+..++.
T Consensus 5 ~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~~~ 84 (327)
T PRK11308 5 LLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKADP 84 (327)
T ss_pred eEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcCCH
Confidence 489999999997421 2468999999999999999999999999999999999999999999999999988764
Q ss_pred ---HHHhcceEEEcCCCC--CCh-hhHHHHHHHHh-------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHH
Q 040099 1083 ---KWLRQQMGVVSQEPV--LFS-DTIRANIAEMA-------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQR 1142 (1236)
Q Consensus 1083 ---~~lR~~i~~V~Qdp~--LF~-gTIreNL~~~a-------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQR 1142 (1236)
..+|++|+||+|+|. |+. -||.+|+.+.. .+.++++.+ |++ .........||||||||
T Consensus 85 ~~~~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~p~~LSgGq~QR 162 (327)
T PRK11308 85 EAQKLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSLSAAERREKALAMMAKV--GLRPEHYDRYPHMFSGGQRQR 162 (327)
T ss_pred HHHHHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHC--CCChHHhcCCCccCCHHHHHH
Confidence 357889999999993 554 48888885221 112223322 332 23345667899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1143 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
++|||||+.+|++||+||||++||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|+++++
T Consensus 163 v~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g~~~~~ 242 (327)
T PRK11308 163 IAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKGTKEQI 242 (327)
T ss_pred HHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998753 7899999999999975 999999999999999999999
Q ss_pred hhccCcccHH
Q 040099 1220 ISTKNGIYTS 1229 (1236)
Q Consensus 1220 l~~~~g~y~~ 1229 (1236)
++++...|.+
T Consensus 243 ~~~p~hpyt~ 252 (327)
T PRK11308 243 FNNPRHPYTQ 252 (327)
T ss_pred hcCCCCHHHH
Confidence 9875555655
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=373.04 Aligned_cols=218 Identities=31% Similarity=0.466 Sum_probs=183.1
Q ss_pred EEEeEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH-
Q 040099 1011 VQFLRVSFKYPTR------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK- 1083 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~- 1083 (1236)
|+++||++.|+.. .+..+|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..++..
T Consensus 3 l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~ 82 (265)
T TIGR02769 3 LEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRKQ 82 (265)
T ss_pred EEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHHH
Confidence 7899999999632 134699999999999999999999999999999999999999999999999999877654
Q ss_pred --HHhcceEEEcCCCC--CC-hhhHHHHHHHHh-------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHH
Q 040099 1084 --WLRQQMGVVSQEPV--LF-SDTIRANIAEMA-------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVA 1144 (1236)
Q Consensus 1084 --~lR~~i~~V~Qdp~--LF-~gTIreNL~~~a-------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRla 1144 (1236)
.+|+.++|+||+|. ++ ..|++||+.... .+.++++.+ |++ ......+..||||||||++
T Consensus 83 ~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGe~qrv~ 160 (265)
T TIGR02769 83 RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTSLDESEQKARIAELLDMV--GLRSEDADKLPRQLSGGQLQRIN 160 (265)
T ss_pred HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCChhhhhCChhhCCHHHHHHHH
Confidence 36788999999983 44 469999984211 112223222 454 3456677899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1145 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|||||+.+|+||||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++.
T Consensus 161 laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 240 (265)
T TIGR02769 161 IARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEECDVAQLLS 240 (265)
T ss_pred HHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEECCHHHHcC
Confidence 99999999999999999999999999999999998753 7899999999999975 99999999999999999999987
Q ss_pred ccCcccHHh
Q 040099 1222 TKNGIYTSL 1230 (1236)
Q Consensus 1222 ~~~g~y~~L 1230 (1236)
.++..+..+
T Consensus 241 ~~~~~~~~~ 249 (265)
T TIGR02769 241 FKHPAGRNL 249 (265)
T ss_pred CCCHHHHHH
Confidence 534444444
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=364.76 Aligned_cols=209 Identities=25% Similarity=0.446 Sum_probs=180.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.+
T Consensus 7 ~i~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGD---AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCC---ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 4899999999963 4699999999999999999999999999999999999999999999999999888877788899
Q ss_pred EEEccCCCCCchhHHHHHhcCCC---CC-CHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKT---HA-TKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~---~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+|++|++.+|+.|++||+.++.. .. ..+++. +.++.+ |+. +.....+.+||||||||++|||||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~---------~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral 152 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFL---------DDLERF--ALPDTILTKNIAELSGGEKQRISLIRNL 152 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHH---------HHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHH
Confidence 99999999998999999987421 11 112222 333444 443 345667789999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEE-CCEEEEEeCcc
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQ-QGKIVEKGTHS 606 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~-~G~i~~~g~~~ 606 (1236)
+++|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.++.||++++|+ ++..+++|+|+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 153 QFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999999999999998753 789999999999998899999994 67778889886
|
|
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-40 Score=376.51 Aligned_cols=214 Identities=33% Similarity=0.563 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC--CCHHHHhcc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--FQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 462 (1236)
|+++||+++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. .+...++++
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPD--GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCC--CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 689999999963 2469999999999999999999999999999999999999999999999999852 234467889
Q ss_pred eEEEccCC--CCCchhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 463 IGLVSQEP--VLLSSSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 463 i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
|+|++|++ .+|+.|+.||+.++.. ..+. +++.++++..++.++ ....+.+||||||||++|
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~LS~Gq~qrv~l 148 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAVGMEGF-----------ENKPPHHLSGGQKKRVAI 148 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchh-----------hcCChhhCCHHHHHHHHH
Confidence 99999997 5788899999987632 1222 233444444444332 334456899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||++.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+. .||+|++|++|++++.|++++++..
T Consensus 149 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 149 AGILAMKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred HHHHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998854 789999999999986 4999999999999999999988754
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-40 Score=370.92 Aligned_cols=213 Identities=28% Similarity=0.457 Sum_probs=180.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i--~~ 1082 (1236)
.|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 12 ~l~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 88 (258)
T PRK14268 12 QIKVENLNLWYGEK---QALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVDV 88 (258)
T ss_pred eEEEeeeEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEcccccchH
Confidence 59999999999743 589999999999999999999999999999999999985 799999999998653 34
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHh---h---------hchHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMA---N---------ANGFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a---~---------~~~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
..+|+.++|+||++.+|+.|++||+.-.. + +.+.++.+ .+.++.........||||||||++||||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~qrv~lara 168 (258)
T PRK14268 89 VELRKNVGMVFQKPNPFPMSIYDNVAYGPRIHGANKKDLDGVVENALRSAALWDETSDRLKSPALSLSGGQQQRLCIART 168 (258)
T ss_pred HHHhhhEEEEecCCccCcccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHHHHHHHHHHHH
Confidence 56788999999999999999999995211 1 11112211 0111234456677899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
|+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.+ ||+|++|++|++++.|+++++.+++..
T Consensus 169 l~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 246 (258)
T PRK14268 169 LAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFGQTRQIFHNPRE 246 (258)
T ss_pred HHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCCC
Confidence 99999999999999999999999999999988778999999999999865 999999999999999999999865333
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.72 Aligned_cols=210 Identities=29% Similarity=0.545 Sum_probs=183.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~~~nl~~~~~~~-~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~i 85 (271)
T PRK13632 7 MIKVENVSFSYPNS-ENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKENLKEIRKKI 85 (271)
T ss_pred EEEEEeEEEEcCCC-CccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCCHHHHhcce
Confidence 48999999999732 24699999999999999999999999999999999999999999999999999888878899999
Q ss_pred EEEcCCC--CCChhhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEP--VLFSDTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+|+||+| .++..|++||+.-... +.++++.+ |++........+||||||||++|||||+++|++
T Consensus 86 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral~~~p~l 163 (271)
T PRK13632 86 GIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIIDDLAKKV--GMEDYLDKEPQNLSGGQKQRVAIASVLALNPEI 163 (271)
T ss_pred EEEEeCHHHhcCcccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCHHHhhCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999998 4567899999952111 11112221 566566777889999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+.+.+.+.|++..+ ++|+|++||+++.+..||+|++|++|++++.|+++++.++
T Consensus 164 llLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 232 (271)
T PRK13632 164 IIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAILADKVIVFSEGKLIAQGKPKEILNN 232 (271)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHhhCCEEEEEECCEEEEecCHHHHhcC
Confidence 999999999999999999999998753 4899999999999988999999999999999999998764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=373.24 Aligned_cols=214 Identities=28% Similarity=0.465 Sum_probs=185.1
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+++||+++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+...+++.
T Consensus 6 ~~l~i~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 82 (265)
T PRK10253 6 ARLRGEQLTLGYGK---YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARR 82 (265)
T ss_pred cEEEEEEEEEEECC---EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhh
Confidence 35899999999963 469999999999999999999999999999999999999999999999999988887778889
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCC-CC------C---CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGK-TH------A---TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~-~~------~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
++|++|++.+|. .|++||+.++. +. . ..+++.++++..++.++ ....+.+||||||||
T Consensus 83 i~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~Gq~qr 151 (265)
T PRK10253 83 IGLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-----------ADQSVDTLSGGQRQR 151 (265)
T ss_pred eEEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-----------hcCCcccCChHHHHH
Confidence 999999998875 59999998753 11 0 11234455555555443 344556899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
++||||++++|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++
T Consensus 152 v~laral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~ 231 (265)
T PRK10253 152 AWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEI 231 (265)
T ss_pred HHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998853 7899999999998865 999999999999999998887
Q ss_pred cc
Q 040099 609 LE 610 (1236)
Q Consensus 609 ~~ 610 (1236)
..
T Consensus 232 ~~ 233 (265)
T PRK10253 232 VT 233 (265)
T ss_pred hh
Confidence 64
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=370.59 Aligned_cols=207 Identities=33% Similarity=0.527 Sum_probs=179.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC--------h
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ--------V 1082 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~--------~ 1082 (1236)
++++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+ .
T Consensus 4 l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 4 IEVKNLVKKFHGQ---TVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred EEEeceEEEECCe---eeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7899999999743 5899999999999999999999999999999999999999999999999987542 3
Q ss_pred HHHhcceEEEcCCCCCCh-hhHHHHHHHHh----h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFS-DTIRANIAEMA----N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a----~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
..+|++++||||+|.+|. .|++||+.... + +.++++.+ |++........+||||||||++||||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~Gq~qrv~la~a 158 (250)
T PRK11264 81 RQLRQHVGFVFQNFNLFPHRTVLENIIEGPVIVKGEPKEEATARARELLAKV--GLAGKETSYPRRLSGGQQQRVAIARA 158 (250)
T ss_pred HHhhhhEEEEecCcccCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCcchhhCChhhCChHHHHHHHHHHH
Confidence 567889999999999886 69999995211 0 11122221 55555566778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 159 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 234 (250)
T PRK11264 159 LAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQGPAKALFAD 234 (250)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999988754 7899999999999965 999999999999999999999765
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=363.74 Aligned_cols=204 Identities=29% Similarity=0.502 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHhc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIRE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r~ 461 (1236)
|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. .+|+
T Consensus 2 l~~~~l~~~~~~--~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLG--GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecC--CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 689999999952 24699999999999999999999999999999999999999999999999999876543 3678
Q ss_pred ceEEEccCCCCC-chhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLL-SSSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~-~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
.++|++|++.++ ..|++||+.++.. ..+.++ +.++++..++.++ ......+||||||||++|
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LS~G~~qrv~l 148 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKVGLLDK-----------AKNFPIQLSGGEQQRVGI 148 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCChhh-----------hhCCchhCCHHHHHHHHH
Confidence 999999999875 5699999988531 122222 3344444444333 334456899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEE
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
|||++.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||+|++|++|+++.
T Consensus 149 aral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 149 ARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred HHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999999999999875 47899999999999976 99999999999863
|
|
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=370.15 Aligned_cols=211 Identities=28% Similarity=0.440 Sum_probs=180.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecc--cCCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQ--KLQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~--~i~~ 1082 (1236)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|++||.++. +.+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (253)
T PRK14267 4 AIETVNLRVYYGSN---HVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDVDP 80 (253)
T ss_pred eEEEEeEEEEeCCe---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccCh
Confidence 48899999999743 589999999999999999999999999999999999987 4999999999997 4566
Q ss_pred HHHhcceEEEcCCCCCChh-hHHHHHHHHhhhc----------hHHHh-hhh-ch----hhhhcCCCCCCChhHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSD-TIRANIAEMANAN----------GFISG-LQE-GY----DTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a~~~----------~~i~~-lp~-Gl----dt~vge~G~~LSGGQrQRlaL 1145 (1236)
..+|++++|+||++.+|.. |++||+....... ..+.. +.. |+ .........+||||||||++|
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~l 160 (253)
T PRK14267 81 IEVRREVGMVFQYPNPFPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQRLVI 160 (253)
T ss_pred HHHhhceeEEecCCccCCCCcHHHHHHHHHHhcCccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHHHHHH
Confidence 6788999999999999976 9999996321110 11111 111 22 233556778999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++++++..+
T Consensus 161 aral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 239 (253)
T PRK14267 161 ARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVGPTRKVFENP 239 (253)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 99999999999999999999999999999999998777999999999999865 9999999999999999999998653
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-41 Score=365.73 Aligned_cols=198 Identities=34% Similarity=0.509 Sum_probs=170.2
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH----H
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW----L 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~----l 1085 (1236)
|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 47899999997421 135999999999999999999999999999999999999999999999999998776432 4
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
|++++|+||+|.+|.+ |++||+.-.. .+.+.+..+ |++........+||||||||++|||||+++
T Consensus 81 ~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~ 158 (218)
T cd03255 81 RRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRERAEELLERV--GLGDRLNHYPSELSGGQQQRVAIARALAND 158 (218)
T ss_pred hhcEEEEeeccccCCCCcHHHHHHHHHhhcCCCHHHHHHHHHHHHHHc--CCchhhhcChhhcCHHHHHHHHHHHHHccC
Confidence 6789999999999986 9999985211 112222222 555556677789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++
T Consensus 159 p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~v~~l~~G~i 218 (218)
T cd03255 159 PKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAEYADRIIELRDGKI 218 (218)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhcEEEEeeCCcC
Confidence 999999999999999999999999998754 7899999999999988999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=372.52 Aligned_cols=219 Identities=32% Similarity=0.509 Sum_probs=186.6
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~ 455 (1236)
+.|+++||+++|++ +++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 36899999999963 4699999999999999999999999999999999999985 48999999999854 34
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC---CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
...++++|+||+|++.+|+.|++||+.++... .. ++.+.++++.+++.+++. ......+..|||||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LS~G~ 155 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVK-------DKLNKSALGLSGGQ 155 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 56678899999999999999999999875311 11 133455666666644432 22445667899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEE-----CCEEEEE
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQ-----QGKIVEK 602 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~-----~G~i~~~ 602 (1236)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++.
T Consensus 156 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 235 (259)
T PRK14260 156 QQRLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEF 235 (259)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEe
Confidence 99999999999999999999999999999999999999998777999999999999865 99999998 5999999
Q ss_pred eCccccccc
Q 040099 603 GTHSELLEN 611 (1236)
Q Consensus 603 g~~~~l~~~ 611 (1236)
|+++++.+.
T Consensus 236 ~~~~~~~~~ 244 (259)
T PRK14260 236 GVTTQIFSN 244 (259)
T ss_pred CCHHHHhcC
Confidence 999998764
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-41 Score=384.62 Aligned_cols=217 Identities=28% Similarity=0.495 Sum_probs=180.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ +.+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+ ...++.|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4999999999963 46999999999999999999999999999999999999999999999999987654 4678899
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
|||||++.++. .|++||+.+... ..+.++..+.++ +++..+ |++........+||||||||++|||||+.
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~ll~~~--~L~~~~~~~~~~LS~G~kqrv~lA~aL~~ 189 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIP-----SLLEFA--RLESKADARVSDLSGGMKRRLTLARALIN 189 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHH-----HHHHHc--CCchhhCCChhhCCHHHHHHHHHHHHHhc
Confidence 99999998874 599999985321 122222222111 122211 33333344445899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|++|||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+.+++..+
T Consensus 190 ~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 190 DPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 999999999999999999999999999885 47999999999999965 999999999999999999998654
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=374.13 Aligned_cols=212 Identities=33% Similarity=0.528 Sum_probs=184.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++||+++|+.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++.+.+...+++.|
T Consensus 5 ~l~~~~l~~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~~~~~~~i 83 (279)
T PRK13635 5 IIRVEHISFRYPDA-ATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETVWDVRRQV 83 (279)
T ss_pred eEEEEEEEEEeCCC-CccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcHHHHhhhe
Confidence 38999999999743 23599999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCC--CCChhhHHHHHHHHhhh--------chHHH-hhhh-chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1090 GVVSQEP--VLFSDTIRANIAEMANA--------NGFIS-GLQE-GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1090 ~~V~Qdp--~LF~gTIreNL~~~a~~--------~~~i~-~lp~-Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+|+||+| .+++.|++|||...... .+.+. .+.. |++..+......||||||||++|||||+.+|+|||
T Consensus 84 ~~~~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p~lll 163 (279)
T PRK13635 84 GMVFQNPDNQFVGATVQDDVAFGLENIGVPREEMVERVDQALRQVGMEDFLNREPHRLSGGQKQRVAIAGVLALQPDIII 163 (279)
T ss_pred EEEEeCHHHhcccccHHHHHhhhHhhCCCCHHHHHHHHHHHHHHcCChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 9999998 56778999999521110 01111 1111 56556667778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|+++++.+.
T Consensus 164 LDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 230 (279)
T PRK13635 164 LDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAAQADRVIVMNKGEILEEGTPEEIFKS 230 (279)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999998764 7899999999999988999999999999999999998764
|
|
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-40 Score=380.57 Aligned_cols=216 Identities=24% Similarity=0.433 Sum_probs=184.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|+ ++.+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. +...+++++|
T Consensus 3 l~~~~l~~~~~---~~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYG---TQNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEEC---CEEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 78999999996 2469999999999999999999999999999999999999999999999999876 3456788999
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
|+||++.+|.. |++||+.+... ....++..+. +++.+..+ |++........+||||||||++|||||+++
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~-----~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~ 151 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQR-----VEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHD 151 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHH-----HHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcC
Confidence 99999999876 99999986321 1122221111 12233333 555555666779999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|++|||||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||||++|++|++++.|+.+++...
T Consensus 152 p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 152 PKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 9999999999999999999999999998778999999999999876 999999999999999999998653
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=377.56 Aligned_cols=211 Identities=27% Similarity=0.453 Sum_probs=179.0
Q ss_pred cEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc--------
Q 040099 1010 EVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK-------- 1079 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~-------- 1079 (1236)
.|+++||+++|+... ..++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 378999999997532 1359999999999999999999999999999999999999999999999987632
Q ss_pred ----------------CChHHHhcceEEEcCCC--CCChhhHHHHHHH---H---------hhhchHHHhhhhchh-hhh
Q 040099 1080 ----------------LQVKWLRQQMGVVSQEP--VLFSDTIRANIAE---M---------ANANGFISGLQEGYD-TLV 1128 (1236)
Q Consensus 1080 ----------------i~~~~lR~~i~~V~Qdp--~LF~gTIreNL~~---~---------a~~~~~i~~lp~Gld-t~v 1128 (1236)
.+...+|++|+||||+| .+|..|++|||.- . ..+.+.++.+ |++ ...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~ 159 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSMGVSKEEAKKRAAKYIELV--GLDESYL 159 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHcCCCHHHHHHHHHHHHHHc--CCChhhh
Confidence 13467889999999986 6888999999951 1 1112222221 454 345
Q ss_pred cCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEe
Q 040099 1129 GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVS 1206 (1236)
Q Consensus 1129 ge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~ 1206 (1236)
.....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+. .||||++|+
T Consensus 160 ~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl~ 239 (305)
T PRK13651 160 QRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFFK 239 (305)
T ss_pred hCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEEE
Confidence 67778999999999999999999999999999999999999999999998874 4789999999999875 599999999
Q ss_pred CCEEEEecChhHHhhc
Q 040099 1207 QGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1207 ~G~Ive~Gt~~eLl~~ 1222 (1236)
+|++++.|+++++.++
T Consensus 240 ~G~i~~~g~~~~~~~~ 255 (305)
T PRK13651 240 DGKIIKDGDTYDILSD 255 (305)
T ss_pred CCEEEEECCHHHHhcC
Confidence 9999999999998765
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=378.84 Aligned_cols=207 Identities=27% Similarity=0.458 Sum_probs=178.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|.|+...+ ...|++|
T Consensus 7 ~i~i~~l~k~~~~---~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-~~~~~~i 82 (306)
T PRK13537 7 PIDFRNVEKRYGD---KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-RHARQRV 82 (306)
T ss_pred eEEEEeEEEEECC---eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-HHHHhcE
Confidence 5999999999974 35999999999999999999999999999999999999999999999999997654 4578999
Q ss_pred EEEcCCCCCCh-hhHHHHHHHHhhh------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEMANA------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~a~~------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
|||||+|.+|. .|++||+.-.+.. .++++.+ |+.........+||||||||++|||||+.+|++|
T Consensus 83 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~aL~~~P~ll 160 (306)
T PRK13537 83 GVVPQFDNLDPDFTVRENLLVFGRYFGLSAAAARALVPPLLEFA--KLENKADAKVGELSGGMKRRLTLARALVNDPDVL 160 (306)
T ss_pred EEEeccCcCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchHhcCchhhCCHHHHHHHHHHHHHhCCCCEE
Confidence 99999999886 6999999522211 1122211 2222223344589999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||++||+.+.+.+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 161 lLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 228 (306)
T PRK13537 161 VLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGAPHALIES 228 (306)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhc
Confidence 9999999999999999999999875 47899999999999966 999999999999999999999765
|
|
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=373.38 Aligned_cols=219 Identities=28% Similarity=0.411 Sum_probs=182.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~lR 1086 (1236)
-|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. .+|
T Consensus 7 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~ 83 (269)
T PRK11831 7 LVDMRGVSFTRGN---RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSRLYTVR 83 (269)
T ss_pred eEEEeCeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhhHHHHh
Confidence 4899999999974 3589999999999999999999999999999999999999999999999999876543 457
Q ss_pred cceEEEcCCCCCChh-hHHHHHHHHhhh----c-----hHHH-hhh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIAEMANA----N-----GFIS-GLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~~~a~~----~-----~~i~-~lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++++|+||++.+|.+ |++||+...... . ..+. .+. -|++........+||||||||++|||||+++|+
T Consensus 84 ~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~LSgGq~qrv~laral~~~p~ 163 (269)
T PRK11831 84 KRMSMLFQSGALFTDMNVFDNVAYPLREHTQLPAPLLHSTVMMKLEAVGLRGAAKLMPSELSGGMARRAALARAIALEPD 163 (269)
T ss_pred hcEEEEecccccCCCCCHHHHHHHHHHHccCCCHHHHHHHHHHHHHHcCChhhhhCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 889999999999986 999998521110 0 0111 111 134444455667899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
+|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.++....+..++
T Consensus 164 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~~~~ 243 (269)
T PRK11831 164 LIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHGSAQALQANPDPRVRQFL 243 (269)
T ss_pred EEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeCCHHHHhcCCcHHHHHHH
Confidence 9999999999999999999999998753 6899999999999866 999999999999999999999875333344444
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=371.53 Aligned_cols=212 Identities=29% Similarity=0.473 Sum_probs=182.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+++.++
T Consensus 2 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGG---RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 789999999963 46999999999999999999999999999999999999999999999999998888878888899
Q ss_pred EEccCCCC-CchhHHHHHhcCCCCC-------C---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 465 LVSQEPVL-LSSSIRDNIAYGKTHA-------T---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 465 ~v~Q~~~l-~~~ti~~ni~~g~~~~-------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
|++|++.+ +..|++||+.++.... . .+++.++++..++ .......+..||||||||++
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~LS~G~~qrl~ 147 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTEL-----------SHLADRDMSTLSGGERQRVH 147 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCc-----------HhhhcCCcccCCHHHHHHHH
Confidence 99999864 4679999998863210 1 1233344444443 33344556789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
||||++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 148 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 148 VARALAQEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999999999999998854 789999999999995 599999999999999999888754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=370.48 Aligned_cols=215 Identities=28% Similarity=0.433 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--C---CCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--P---SSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~---~~G~I~idG~di~~--i~~ 1082 (1236)
-|+++||+++|+.+ ++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|++||.++.. .+.
T Consensus 12 ~l~i~~l~~~~~~~---~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~~~~ 88 (259)
T PRK14274 12 VYQINGMNLWYGQH---HALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGKVDL 88 (259)
T ss_pred eEEEeeEEEEECCe---eeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccccCH
Confidence 48999999999743 58999999999999999999999999999999999997 3 58999999999864 445
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhh-------------chHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANA-------------NGFISGL--QEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~-------------~~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||+|.+|.+|++||+.-.... .+.++.+ .+.+.......+.+||||||||++|||
T Consensus 89 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~Gq~qrv~lar 168 (259)
T PRK14274 89 VELRKNIGMVFQKGNPFPQSIFDNVAYGPRIHGTKNKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGGQQQRLCIAR 168 (259)
T ss_pred HHHhhceEEEecCCcccccCHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHH
Confidence 6788999999999999999999998521111 1111111 111123456777899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...
T Consensus 169 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 248 (259)
T PRK14274 169 ALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECNDTNKMFSNPDDQ 248 (259)
T ss_pred HHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEECCHHHHhhCCCCH
Confidence 999999999999999999999999999999998778899999999999865 9999999999999999999998754433
Q ss_pred c
Q 040099 1227 Y 1227 (1236)
Q Consensus 1227 y 1227 (1236)
|
T Consensus 249 ~ 249 (259)
T PRK14274 249 R 249 (259)
T ss_pred H
Confidence 3
|
|
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-40 Score=380.45 Aligned_cols=217 Identities=27% Similarity=0.427 Sum_probs=180.9
Q ss_pred EEEeEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC----CCCcEEEECCeecccCChHHH
Q 040099 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD----PSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~----~~~G~I~idG~di~~i~~~~l 1085 (1236)
++++|+++.|+.+.. ..+|+||||+|++||.+||||+||||||||+++|+|+++ |++|+|.+||.|+.+++.+.+
T Consensus 4 L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~~ 83 (326)
T PRK11022 4 LNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKER 83 (326)
T ss_pred EEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 789999999975321 359999999999999999999999999999999999998 489999999999998887665
Q ss_pred hc----ceEEEcCCCC--CCh-hhHHHHHHHHh-------------hhchHHHhhhhchh---hhhcCCCCCCChhHHHH
Q 040099 1086 RQ----QMGVVSQEPV--LFS-DTIRANIAEMA-------------NANGFISGLQEGYD---TLVGERGVQLSGGQKQR 1142 (1236)
Q Consensus 1086 R~----~i~~V~Qdp~--LF~-gTIreNL~~~a-------------~~~~~i~~lp~Gld---t~vge~G~~LSGGQrQR 1142 (1236)
|+ +|+||||+|. ++. -|+.+|+.+.. .+.++++.+ |++ ........+||||||||
T Consensus 84 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~~~~~~~~~~~~~L~~~--gL~~~~~~l~~~p~~LSgGq~QR 161 (326)
T PRK11022 84 RNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGGNKKTRRQRAIDLLNQV--GIPDPASRLDVYPHQLSGGMSQR 161 (326)
T ss_pred HHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHC--CCCChHHHHhCCchhCCHHHHHH
Confidence 53 6999999995 343 35665553211 112222222 442 34567788999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHH
Q 040099 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1143 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
++|||||+.+|++||+|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||.+|+|+|.|+++++
T Consensus 162 v~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g~~~~~ 241 (326)
T PRK11022 162 VMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETGKAHDI 241 (326)
T ss_pred HHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHH
Confidence 9999999999999999999999999999999999998753 789999999999995 5999999999999999999999
Q ss_pred hhccCcccHH
Q 040099 1220 ISTKNGIYTS 1229 (1236)
Q Consensus 1220 l~~~~g~y~~ 1229 (1236)
++++...|.+
T Consensus 242 ~~~p~hpyt~ 251 (326)
T PRK11022 242 FRAPRHPYTQ 251 (326)
T ss_pred hhCCCChHHH
Confidence 9876656654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=370.31 Aligned_cols=209 Identities=34% Similarity=0.547 Sum_probs=180.9
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC--------
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-------- 1080 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-------- 1080 (1236)
+.++++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++..+
T Consensus 4 ~~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (257)
T PRK10619 4 NKLNVIDLHKRYGEH---EVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQLK 80 (257)
T ss_pred ccEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccccccccccc
Confidence 569999999999743 589999999999999999999999999999999999999999999999998642
Q ss_pred -----ChHHHhcceEEEcCCCCCChh-hHHHHHHHHh----h---------hchHHHhhhhchhhhh-cCCCCCCChhHH
Q 040099 1081 -----QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA----N---------ANGFISGLQEGYDTLV-GERGVQLSGGQK 1140 (1236)
Q Consensus 1081 -----~~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a----~---------~~~~i~~lp~Gldt~v-ge~G~~LSGGQr 1140 (1236)
....+|++++||||++.+|.. |++||+.... + +.++++.+ |++... ......||||||
T Consensus 81 ~~~~~~~~~~~~~i~~v~q~~~l~~~~sv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~G~~ 158 (257)
T PRK10619 81 VADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYLAKV--GIDERAQGKYPVHLSGGQQ 158 (257)
T ss_pred cccchHHHHHhhceEEEecCcccCCCCcHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHc--CCChhhhhCCcccCCHHHH
Confidence 135678899999999999975 9999985211 1 11222222 454443 566789999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhH
Q 040099 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1141 QRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
||++|||||+++|++|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|++++
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 238 (257)
T PRK10619 159 QRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGAPEQ 238 (257)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999875 47899999999999986 99999999999999999999
Q ss_pred Hhhc
Q 040099 1219 LIST 1222 (1236)
Q Consensus 1219 Ll~~ 1222 (1236)
+.+.
T Consensus 239 ~~~~ 242 (257)
T PRK10619 239 LFGN 242 (257)
T ss_pred hhhC
Confidence 9765
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=371.73 Aligned_cols=212 Identities=34% Similarity=0.495 Sum_probs=182.1
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--C
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--L 1080 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i 1080 (1236)
.+.|+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .
T Consensus 17 ~~~l~~~nl~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~~ 93 (267)
T PRK14235 17 EIKMRARDVSVFYGE---KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPRL 93 (267)
T ss_pred CceEEEEeEEEEECC---EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECccccc
Confidence 457999999999974 3589999999999999999999999999999999999975 89999999999864 3
Q ss_pred ChHHHhcceEEEcCCCCCChhhHHHHHHHHhhh----------chHHHh-hhh-chh----hhhcCCCCCCChhHHHHHH
Q 040099 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA----------NGFISG-LQE-GYD----TLVGERGVQLSGGQKQRVA 1144 (1236)
Q Consensus 1081 ~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~----------~~~i~~-lp~-Gld----t~vge~G~~LSGGQrQRla 1144 (1236)
+...+|++++|+||+|.+|..|++||+.-.... .+.+.. +.. |++ ......+.+||||||||++
T Consensus 94 ~~~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~ 173 (267)
T PRK14235 94 DVVELRARVGMVFQKPNPFPKSIYENVAYGPRIHGLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGGQQQRLC 173 (267)
T ss_pred chHHHhhceEEEecCCCCCCCcHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHHHHHHHH
Confidence 566789999999999999989999999621111 111111 111 332 3456678899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1145 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||+.+|++|||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 174 laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14235 174 IARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVGDTEKMFTN 252 (267)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999999988777899999999999965 899999999999999999999865
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-40 Score=376.98 Aligned_cols=225 Identities=29% Similarity=0.458 Sum_probs=186.1
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCCC--C
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKEF--Q 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~ 455 (1236)
..|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|.++... +
T Consensus 38 ~~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~ 114 (286)
T PRK14275 38 PHVVAKNFSIYYGE---FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTD 114 (286)
T ss_pred eEEEEeeeEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccc
Confidence 35899999999963 359999999999999999999999999999999999864 4999999999998643 3
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCC--CC-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
...+|++++||+|++.+|+.|++|||.++.. .. +. +++.++++..++.+.+ .......+..|||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l-------~~~~~~~~~~LSgGq 187 (286)
T PRK14275 115 EVLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEV-------SDRLDKNALGLSGGQ 187 (286)
T ss_pred hHHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccch-------hhHhhCChhhCCHHH
Confidence 3457889999999999998899999998632 11 11 2333444444432211 223455667899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|++++
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~ 267 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQ 267 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998777899999999999865 99999999999999999999
Q ss_pred ccccccchhh
Q 040099 608 LLENPYGAYN 617 (1236)
Q Consensus 608 l~~~~~~~y~ 617 (1236)
+..++...|.
T Consensus 268 ~~~~~~~~~~ 277 (286)
T PRK14275 268 LFTNPKDRMT 277 (286)
T ss_pred HHhCCCcHHH
Confidence 8765433333
|
|
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=359.78 Aligned_cols=201 Identities=32% Similarity=0.543 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~~~~l~~~~~~---~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~--~~~~i~ 73 (211)
T cd03298 1 VRLDKIRFSYGE---QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP--ADRPVS 73 (211)
T ss_pred CEEEeEEEEeCC---Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH--hHccEE
Confidence 478999999963 22 39999999999999999999999999999999999999999999999876654 357899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC-C-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT-H-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~-~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|.. |++||+.++.. . ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~ia~a 142 (211)
T cd03298 74 MLFQENNLFAHLTVEQNVGLGLSPGLKLTAEDRQAIEVALARVGLAGLEKRLP-----------GELSGGERQRVALARV 142 (211)
T ss_pred EEecccccCCCCcHHHHHhcccccccCccHHHHHHHHHHHHHcCCHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 99999987642 1 12345666676666665555444 4899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
++++|++|||||||++||+++...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 143 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 211 (211)
T cd03298 143 LVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQG 211 (211)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeecC
Confidence 9999999999999999999999999999998753 7899999999999866 9999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-40 Score=387.20 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=181.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++|++++|++ ..+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~i~~l~~~~~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~~--~~~i 77 (369)
T PRK11000 3 SVTLRNVTKAYGD---VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPPA--ERGV 77 (369)
T ss_pred EEEEEEEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHh--HCCE
Confidence 4889999999974 3589999999999999999999999999999999999999999999999999876653 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++|||||+++|++|
T Consensus 78 ~~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~l--gL~~~~~~~~~~LSgGq~QRvaLAraL~~~P~lL 155 (369)
T PRK11000 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEEINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (369)
T ss_pred EEEeCCcccCCCCCHHHHHHhHHhhcCCCHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999975 9999996211 111222222 4555556667899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||||||+||+.+.+.+.+.|++..+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 156 LLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g~~~~i~~~p~~~~ 229 (369)
T PRK11000 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPANRF 229 (369)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 99999999999999999999988753 7899999999998865 99999999999999999999987654433
|
|
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=362.44 Aligned_cols=203 Identities=26% Similarity=0.444 Sum_probs=174.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++|.++... ...+|++++
T Consensus 1 i~~~~~~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~-~~~~~~~i~ 76 (220)
T cd03265 1 IEVENLVKKYGDF---EAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVRE-PREVRRRIG 76 (220)
T ss_pred CEEEEEEEEECCE---EeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcC-hHHHhhcEE
Confidence 5789999999743 589999999999999999999999999999999999999999999999998653 356788999
Q ss_pred EEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||++.+|.. |++||+.-... +.+.++.+ |++........+||||||||++||||++.+|++||
T Consensus 77 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~la~al~~~p~lll 154 (220)
T cd03265 77 IVFQDLSVDDELTGWENLYIHARLYGVPGAERRERIDELLDFV--GLLEAADRLVKTYSGGMRRRLEIARSLVHRPEVLF 154 (220)
T ss_pred EecCCccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999998875 99999952111 11122222 44444555667899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|||||++||+++.+.+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 155 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 219 (220)
T cd03265 155 LDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEGTPEEL 219 (220)
T ss_pred EcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeCChHHc
Confidence 9999999999999999999988753 6899999999999875 999999999999999998875
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=367.37 Aligned_cols=206 Identities=23% Similarity=0.429 Sum_probs=181.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 3 i~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (242)
T TIGR03411 3 LYLEGLSVSFDG---FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPEHQIARAGI 79 (242)
T ss_pred EEEEeeEEEcCC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCHHHHHhcCe
Confidence 789999999974 35899999999999999999999999999999999999999999999999998877654 35679
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh--------------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN--------------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~--------------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
+|+||++.+|.+ |++||+..... +.++++.+ |++.........||||||||++||||
T Consensus 80 ~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrv~lara 157 (242)
T TIGR03411 80 GRKFQKPTVFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETI--GLADEADRLAGLLSHGQKQWLEIGML 157 (242)
T ss_pred eEeccccccCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHH
Confidence 999999999987 99999963111 11112211 56656667778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
++++|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 158 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~~~~~~~~ 231 (242)
T TIGR03411 158 LMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEGSLDQVQA 231 (242)
T ss_pred HhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeCCHHHHhc
Confidence 99999999999999999999999999999998778999999999999975 99999999999999999999875
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=385.91 Aligned_cols=212 Identities=30% Similarity=0.453 Sum_probs=182.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHHHh
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKWIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r 460 (1236)
|++ |++++|++ + .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+. +....+
T Consensus 2 l~~-~l~k~~~~---~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 2 LEL-NFKQQLGD---L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred eEE-EEEEEeCC---E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 567 99999953 2 23 89999999999999999999999999999999999999999999998653 234467
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++++||+|++.+|+ .|++|||.++......+++.++++..++.++..+ ...+||||||||++|||||+
T Consensus 76 ~~i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~gl~~~~~~-----------~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDARLFPHYKVRGNLRYGMAKSMVAQFDKIVALLGIEPLLDR-----------YPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcccCCCCcHHHHHHhhhhhhhHHHHHHHHHHcCCchhhhC-----------CcccCCHHHHHHHHHHHHHH
Confidence 89999999999986 5999999997554445566666666665544444 44689999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
.+|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++.
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g~~~~i~~~p~ 221 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFGPLEEVWASSA 221 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEecCHHHHHhCcc
Confidence 99999999999999999999999999998754 6899999999998865 99999999999999999999987653
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=368.90 Aligned_cols=223 Identities=32% Similarity=0.544 Sum_probs=189.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~~ 456 (1236)
.++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.+||.++... +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999963 469999999999999999999999999999999999864 4899999999998653 45
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--C-CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--H-ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~-~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++++++|++|++.+|+.|++||+.++.. . .+. +++.++++.+++.+++.. ..++.+.+||||||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~-------~~~~~~~~LS~Gq~ 152 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKD-------KLDKSALGLSGGQQ 152 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHH-------HHhCCcccCCHHHH
Confidence 567889999999999999999999987531 1 112 335556666666555432 23556778999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|++|++++.|+++++
T Consensus 153 qrv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~ 232 (250)
T PRK14266 153 QRLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQI 232 (250)
T ss_pred HHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998778999999999998876 999999999999999999998
Q ss_pred cccccchh
Q 040099 609 LENPYGAY 616 (1236)
Q Consensus 609 ~~~~~~~y 616 (1236)
...+.+.+
T Consensus 233 ~~~~~~~~ 240 (250)
T PRK14266 233 FINPKDKR 240 (250)
T ss_pred HhCCCChH
Confidence 76544433
|
|
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=371.09 Aligned_cols=221 Identities=24% Similarity=0.433 Sum_probs=185.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 462 (1236)
-++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...+ +..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999963 469999999999999999999999999999999999999999999999999987775544 456
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCCCC--------------HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTHAT--------------KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG 527 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~~~--------------~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG 527 (1236)
++|++|++.+|.. |++||+.++..... .++..+. ...+.++++.+ |++......+.+||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~--gl~~~~~~~~~~LS~G 157 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEA--LDRAATWLERV--GLLEHANRQAGNLAYG 157 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHH--HHHHHHHHHhC--ChhhhhhCChhhCCHH
Confidence 9999999999985 99999998632100 0000011 11223445555 6666777788899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
||||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 158 ~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 237 (255)
T PRK11300 158 QQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGT 237 (255)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCC
Confidence 99999999999999999999999999999999999999998753 7899999999999865 99999999999999999
Q ss_pred ccccccc
Q 040099 605 HSELLEN 611 (1236)
Q Consensus 605 ~~~l~~~ 611 (1236)
.+++...
T Consensus 238 ~~~~~~~ 244 (255)
T PRK11300 238 PEEIRNN 244 (255)
T ss_pred HHHHhhC
Confidence 8887643
|
|
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=384.54 Aligned_cols=213 Identities=33% Similarity=0.488 Sum_probs=183.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++++|++ .++|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++..+++. ++++
T Consensus 14 ~L~l~~l~~~~~~---~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~~--~r~i 88 (375)
T PRK09452 14 LVELRGISKSFDG---KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPAE--NRHV 88 (375)
T ss_pred eEEEEEEEEEECC---eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCHH--HCCE
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999887764 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh--------hchHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN--------ANGFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~--------~~~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+||+|++.||.. ||+|||.-... ....+.. +. -|++........+||||||||+||||||+++|++|||
T Consensus 89 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~~LSgGq~QRVaLARaL~~~P~llLL 168 (375)
T PRK09452 89 NTVFQSYALFPHMTVFENVAFGLRMQKTPAAEITPRVMEALRMVQLEEFAQRKPHQLSGGQQQRVAIARAVVNKPKVLLL 168 (375)
T ss_pred EEEecCcccCCCCCHHHHHHHHHhhcCCCHHHHHHHHHHHHHHcCCchhhhCChhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 999999999965 99999962111 0111111 11 1555556677789999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1159 DEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|++++++.++...|
T Consensus 169 DEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~i~~~p~~~~ 240 (375)
T PRK09452 169 DESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDGTPREIYEEPKNLF 240 (375)
T ss_pred eCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 999999999999999999998764 7899999999999754 99999999999999999999998765444
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-40 Score=380.34 Aligned_cols=219 Identities=25% Similarity=0.407 Sum_probs=183.4
Q ss_pred cEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC---CcEEEECCeecccCChHHH
Q 040099 1010 EVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~---~G~I~idG~di~~i~~~~l 1085 (1236)
-++++|+++.|+.+. ...+|+||||+|++||++||||+||||||||+++|+|+++|. +|+|.+||.|+..++...+
T Consensus 12 ~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~~~~~ 91 (330)
T PRK09473 12 LLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLPEKEL 91 (330)
T ss_pred eEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCCHHHH
Confidence 589999999996421 246899999999999999999999999999999999999996 9999999999998887765
Q ss_pred h----cceEEEcCCC--CCCh-hhHHHHHHHHhh-------------hchHHH--hhhhchhhhhcCCCCCCChhHHHHH
Q 040099 1086 R----QQMGVVSQEP--VLFS-DTIRANIAEMAN-------------ANGFIS--GLQEGYDTLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1086 R----~~i~~V~Qdp--~LF~-gTIreNL~~~a~-------------~~~~i~--~lp~Gldt~vge~G~~LSGGQrQRl 1143 (1236)
| ++|+|||||| .++. .|+.+|+.+... +.+.++ .++++. ..++..+.+||||||||+
T Consensus 92 ~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~~~~~~~~~~~~~L~~vgL~~~~-~~~~~~p~~LSgG~~QRv 170 (330)
T PRK09473 92 NKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMSKAEAFEESVRMLDAVKMPEAR-KRMKMYPHEFSGGMRQRV 170 (330)
T ss_pred HHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCCChH-HHhcCCcccCCHHHHHHH
Confidence 3 4799999999 4544 477777642211 111222 123322 235677889999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+|||||+.+|++||+|||||+||..+...|.+.|+++.+ +.|+|+|||+++.+.. ||+|+||.+|+|+|.|++++++
T Consensus 171 ~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g~~~~i~ 250 (330)
T PRK09473 171 MIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYGNARDVF 250 (330)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHH
Confidence 999999999999999999999999999999999988754 7899999999999975 9999999999999999999999
Q ss_pred hccCcccHH
Q 040099 1221 STKNGIYTS 1229 (1236)
Q Consensus 1221 ~~~~g~y~~ 1229 (1236)
+++...|.+
T Consensus 251 ~~p~~pyt~ 259 (330)
T PRK09473 251 YQPSHPYSI 259 (330)
T ss_pred hCCCCHHHH
Confidence 876666765
|
|
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-40 Score=360.77 Aligned_cols=197 Identities=29% Similarity=0.515 Sum_probs=171.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|+++ ++|+|+||+|++| ++||+||||||||||+++|.|+++|++|+|.++|.++.+.+ ..+|++++
T Consensus 1 i~~~~~~~~~~~~---~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-~~~~~~i~ 75 (211)
T cd03264 1 LQLENLTKRYGKK---RALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-QKLRRRIG 75 (211)
T ss_pred CEEEEEEEEECCE---EEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-HHHHhheE
Confidence 5789999999753 5899999999999 99999999999999999999999999999999999998776 67899999
Q ss_pred EEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||+|.+|.+ |++||+.-... +.+.++.+ |++........+||||||||++|||||+++|++||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~lll 153 (211)
T cd03264 76 YLPQEFGVYPNFTVREFLDYIAWLKGIPSKEVKARVDEVLELV--NLGDRAKKKIGSLSGGMRRRVGIAQALVGDPSILI 153 (211)
T ss_pred EecCCCcccccCCHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--CCHHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999986 99999852111 11112211 44433445667899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||++++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~g 211 (211)
T cd03264 154 VDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFEG 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEecC
Confidence 99999999999999999999998777999999999999965 9999999999999875
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=348.14 Aligned_cols=172 Identities=36% Similarity=0.663 Sum_probs=161.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++. +.++++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.+.+...++++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999742 246999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~q~~~~~~~tv~~~l------------------------------------------LS~G~~qrv~la~al~~~p~~ 117 (173)
T cd03246 80 YLPQDDELFSGSIAENI------------------------------------------LSGGQRQRLGLARALYGNPRI 117 (173)
T ss_pred EECCCCccccCcHHHHC------------------------------------------cCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999998 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhhcCeEEEEECCEE
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRNANIIAVIQQGKI 599 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~ad~i~vl~~G~i 599 (1236)
|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||++++|++|++
T Consensus 118 lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 118 LVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred EEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 999999999999999999999988754 7899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=370.64 Aligned_cols=212 Identities=31% Similarity=0.484 Sum_probs=181.6
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CC
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQ 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~ 1081 (1236)
..|+++||+++|+.+ ++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 12 ~~l~i~nl~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~~ 88 (269)
T PRK14259 12 IIISLQNVTISYGTF---EAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRVD 88 (269)
T ss_pred ceEEEEeEEEEECCE---EEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccCC
Confidence 359999999999743 58999999999999999999999999999999999997 589999999999863 46
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhhh-------ch----HHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANA-------NG----FISGL--QEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~-------~~----~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
...+|++++||||+|.+|..|++||+.-.+.. .+ .++.+ ..+++........+||||||||++||||
T Consensus 89 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrl~lara 168 (269)
T PRK14259 89 PVEVRRRIGMVFQQPNPFPKSIYENIAFGARINGYTGDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQQQRLCIART 168 (269)
T ss_pred HHHHhhceEEEccCCccchhhHHHHHhhhhhhcCCcHHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHHHHHHHHHHH
Confidence 67789999999999999999999999621111 11 12211 1233445666778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeC-----------CEEEEecCh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQ-----------GMIVEKGSH 1216 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~-----------G~Ive~Gt~ 1216 (1236)
|+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++ |+++|.|++
T Consensus 169 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~~~~~~~~~g~~g~~~~~~~~ 248 (269)
T PRK14259 169 IAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNAEEVEGGSGGKVGYLVEFNET 248 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeccccccccccccceEEEeCCH
Confidence 99999999999999999999999999999988777899999999999865 999999996 679999999
Q ss_pred hHHhhcc
Q 040099 1217 ESLISTK 1223 (1236)
Q Consensus 1217 ~eLl~~~ 1223 (1236)
+++...+
T Consensus 249 ~~~~~~~ 255 (269)
T PRK14259 249 KKIFNSP 255 (269)
T ss_pred HHHHhCc
Confidence 9998653
|
|
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-40 Score=348.76 Aligned_cols=172 Identities=40% Similarity=0.697 Sum_probs=162.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+.. ..++++|+||+|++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++
T Consensus 1 i~~~~l~~~~~~~-~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (173)
T cd03246 1 LEVENVSFRYPGA-EPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDPNELGDHVG 79 (173)
T ss_pred CEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCHHHHHhheE
Confidence 4789999999753 235899999999999999999999999999999999999999999999999999988889999999
Q ss_pred EEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1091 VVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
|++|+|.+|++|++||+ ||||||||++||||++++|++|||||||++||+.+.
T Consensus 80 ~~~q~~~~~~~tv~~~l---------------------------LS~G~~qrv~la~al~~~p~~lllDEPt~~LD~~~~ 132 (173)
T cd03246 80 YLPQDDELFSGSIAENI---------------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEGE 132 (173)
T ss_pred EECCCCccccCcHHHHC---------------------------cCHHHHHHHHHHHHHhcCCCEEEEECCccccCHHHH
Confidence 99999999999999997 999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1171 RVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1171 ~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
..+.+.|++.. +++|+|++||+++.+..||+|++|++|++
T Consensus 133 ~~l~~~l~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~G~i 173 (173)
T cd03246 133 RALNQAIAALKAAGATRIVIAHRPETLASADRILVLEDGRV 173 (173)
T ss_pred HHHHHHHHHHHhCCCEEEEEeCCHHHHHhCCEEEEEECCCC
Confidence 99999998875 47899999999999988999999999974
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=366.26 Aligned_cols=207 Identities=31% Similarity=0.507 Sum_probs=180.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC--ChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL--QVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i--~~~~lR~~ 1088 (1236)
++++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++... +...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (240)
T PRK09493 2 IEFKNVSKHFGP---TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKVDERLIRQE 78 (240)
T ss_pred EEEEeEEEEECC---eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCChhHHHHhhc
Confidence 689999999974 3589999999999999999999999999999999999999999999999999764 34577889
Q ss_pred eEEEcCCCCCCh-hhHHHHHHHHh-------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFS-DTIRANIAEMA-------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~-gTIreNL~~~a-------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++|+||++.+|. .|++||+.-.. .+.+.++.+ |++.........||||||||++||||++++|+
T Consensus 79 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 156 (240)
T PRK09493 79 AGMVFQQFYLFPHLTALENVMFGPLRVRGASKEEAEKQARELLAKV--GLAERAHHYPSELSGGQQQRVAIARALAVKPK 156 (240)
T ss_pred eEEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc--CChHHHhcChhhcCHHHHHHHHHHHHHhcCCC
Confidence 999999998886 59999985211 011222222 56666677778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||++||+++...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 157 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (240)
T PRK09493 157 LMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDGDPQVLIKN 226 (240)
T ss_pred EEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeCCHHHHhcC
Confidence 999999999999999999999998875 47899999999999965 999999999999999999998765
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-40 Score=365.36 Aligned_cols=209 Identities=25% Similarity=0.382 Sum_probs=179.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~ 1088 (1236)
-|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+... +|+.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~~~~~~ 81 (237)
T PRK11614 5 MLSFDKVSAHYGKI---QALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAKIMREA 81 (237)
T ss_pred EEEEEeEEEeeCCc---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCHHHHHHhC
Confidence 48899999999743 5899999999999999999999999999999999999999999999999998887654 6788
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
++|+||++.+|.+ |++||+.... .+.+.+..++ +++.........||||||||++||||++++|+|||
T Consensus 82 i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ill 160 (237)
T PRK11614 82 VAIVPEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFP-RLHERRIQRAGTMSGGEQQMLAIGRALMSQPRLLL 160 (237)
T ss_pred EEEeccCcccCCCCcHHHHHHHhhhccChhHHHHHHHHHHHHHH-HHHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEEE
Confidence 9999999999985 9999995211 1122222232 23333445677899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+. .||+|++|++|++++.|+++++...
T Consensus 161 lDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 227 (237)
T PRK11614 161 LDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDTGDALLAN 227 (237)
T ss_pred EcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCCHHHHhcC
Confidence 999999999999999999998865 4789999999999875 5999999999999999999999753
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-40 Score=362.59 Aligned_cols=199 Identities=31% Similarity=0.511 Sum_probs=171.1
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
++++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++... +|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (221)
T TIGR02211 2 LKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKLR 81 (221)
T ss_pred EEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHHH
Confidence 68999999997421 135999999999999999999999999999999999999999999999999998877544 34
Q ss_pred -cceEEEcCCCCCCh-hhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 -QQMGVVSQEPVLFS-DTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 -~~i~~V~Qdp~LF~-gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++++||||+|.+|. .|++||+.-.. .+.+++..+ |++.........||||||||++|||||+++
T Consensus 82 ~~~i~~v~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~ 159 (221)
T TIGR02211 82 NKKLGFIYQFHHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLEKV--GLEHRINHRPSELSGGERQRVAIARALVNQ 159 (221)
T ss_pred HhcEEEEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhCC
Confidence 68999999999985 59999985211 111222222 566666677789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEE
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Iv 1211 (1236)
|+||||||||++||+++...+.+.|+++. .++|+|+|||+++.+..||+|++|++|+++
T Consensus 160 p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 160 PSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAKKLDRVLEMKDGQLF 220 (221)
T ss_pred CCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhhcCEEEEEeCCEec
Confidence 99999999999999999999999999875 378999999999999889999999999986
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=371.57 Aligned_cols=220 Identities=31% Similarity=0.491 Sum_probs=187.5
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecC----
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLK---- 452 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~---- 452 (1236)
.+.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.
T Consensus 14 ~~~l~~~~l~~~~~~---~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGG---YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECC---eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 457999999999963 4699999999999999999999999999999999999975 7999999998774
Q ss_pred CCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCC
Q 040099 453 EFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLS 525 (1236)
Q Consensus 453 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LS 525 (1236)
..+...+++.|+|++|++.+|..|++||+.++.. .. .++++.++++.+++.+ ++.+..+.....||
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~l~~~~~~~~~~LS 163 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWD-------EVKDRLGDLAFNLS 163 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCch-------hhhHHHhCCcccCC
Confidence 2344567889999999999999999999987531 11 1234555555555433 23344566678999
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
||||||++|||||+++|+++||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||++++|++|++++.|+
T Consensus 164 ~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~ 243 (265)
T PRK14252 164 GGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGA 243 (265)
T ss_pred HHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999999998777899999999999865 99999999999999999
Q ss_pred ccccccc
Q 040099 605 HSELLEN 611 (1236)
Q Consensus 605 ~~~l~~~ 611 (1236)
++++..+
T Consensus 244 ~~~~~~~ 250 (265)
T PRK14252 244 TDTIFIK 250 (265)
T ss_pred HHHHHhC
Confidence 9988754
|
|
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=366.49 Aligned_cols=211 Identities=36% Similarity=0.543 Sum_probs=181.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. ++.++
T Consensus 1 l~~~~l~~~~~~---~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~~--~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGG---FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPPH--KRPVN 75 (232)
T ss_pred CEEEeEEEEeCC---eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCChh--hcceE
Confidence 478999999963 4699999999999999999999999999999999999999999999999998766542 67899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
||+|++.+|.+ |++||+.++.. ..+ ++++.++++..++.+++.+. ..+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~lS~G~~qrl~lara 144 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRK-----------PSQLSGGQQQRVAIARA 144 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCC-----------hhhCCHHHHHHHHHHHH
Confidence 99999999865 99999987521 111 23445555555555554444 45899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++.+|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 145 l~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 145 LVNEPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 9999999999999999999999999999998864 7899999999999865 999999999999999998887654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=388.20 Aligned_cols=229 Identities=31% Similarity=0.485 Sum_probs=191.1
Q ss_pred CcEEEEeEEEECCCC--------CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee--cC
Q 040099 383 GDIELKDVNFSYPAR--------PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN--LK 452 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~--------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~--~~ 452 (1236)
.-++++|++++|..+ ....+++||||++++||++||||+||||||||.++|+|+.+|++|+|.++|.| ++
T Consensus 279 ~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~~~~ 358 (539)
T COG1123 279 PLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDLDLT 358 (539)
T ss_pred ceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCcccccc
Confidence 358899999999742 12468999999999999999999999999999999999999999999999987 23
Q ss_pred CCCHHHHhcceEEEccCCC--CC-chhHHHHHhcCCC---CC----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCC
Q 040099 453 EFQLKWIREKIGLVSQEPV--LL-SSSIRDNIAYGKT---HA----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522 (1236)
Q Consensus 453 ~~~~~~~r~~i~~v~Q~~~--l~-~~ti~~ni~~g~~---~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~ 522 (1236)
.-+....|+++-+|+|||+ |- ..||.++|.-... .. ..+.+.+.++..++.+- .....+.
T Consensus 359 ~~~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~~~~~~~~rv~~ll~~VgL~~~----------~l~ryP~ 428 (539)
T COG1123 359 GGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGGSGAERRARVAELLELVGLPPE----------FLDRYPH 428 (539)
T ss_pred cchhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhcccchHHHHHHHHHHHHHcCCCHH----------HHhcCch
Confidence 2334567889999999996 33 3599999875321 11 11235555666655531 2344456
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
+||||||||+||||||+.+|+++|+|||||+||+.+.+.|.+.|+++.+ |-|.++|||+++.++. ||||+||++|+|
T Consensus 429 elSGGQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~i 508 (539)
T COG1123 429 ELSGGQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRI 508 (539)
T ss_pred hcCcchhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeE
Confidence 9999999999999999999999999999999999999999999999864 6899999999999987 999999999999
Q ss_pred EEEeCcccccccccchhhhhHH
Q 040099 600 VEKGTHSELLENPYGAYNRLIR 621 (1236)
Q Consensus 600 ~~~g~~~~l~~~~~~~y~~~~~ 621 (1236)
||.|+.+++.+.+...|.+...
T Consensus 509 VE~G~~~~v~~~p~h~Ytr~L~ 530 (539)
T COG1123 509 VEEGPTEKVFENPQHPYTRKLL 530 (539)
T ss_pred EEeCCHHHHhcCCCChHHHHHH
Confidence 9999999999998888887653
|
|
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=366.86 Aligned_cols=208 Identities=30% Similarity=0.516 Sum_probs=180.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc------cCChH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ------KLQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~------~i~~~ 1083 (1236)
.++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+..
T Consensus 2 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 78 (242)
T PRK11124 2 SIQLNGINCFYGAH---QALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIR 78 (242)
T ss_pred EEEEEeeEEEECCe---eeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHH
Confidence 37899999999743 5999999999999999999999999999999999999999999999999873 12345
Q ss_pred HHhcceEEEcCCCCCChh-hHHHHHHHH-h------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSD-TIRANIAEM-A------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~g-TIreNL~~~-a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
.+|++++|+||+|.+|.+ |++||+... . .+.+++..+ |++........+||||||||++||||+
T Consensus 79 ~~~~~i~~~~q~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral 156 (242)
T PRK11124 79 ELRRNVGMVFQQYNLWPHLTVQQNLIEAPCRVLGLSKDQALARAEKLLERL--RLKPYADRFPLHLSGGQQQRVAIARAL 156 (242)
T ss_pred HHHhheEEEecCccccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHH
Confidence 678899999999999975 999999521 1 111222222 566666777889999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+++|++|||||||++||+++...+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 157 ~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 231 (242)
T PRK11124 157 MMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGDASCFTQP 231 (242)
T ss_pred hcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHhcCc
Confidence 99999999999999999999999999999875 47899999999999965 999999999999999999998654
|
|
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=367.36 Aligned_cols=212 Identities=32% Similarity=0.487 Sum_probs=181.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--CC
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--LQ 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i~ 1081 (1236)
|.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+ .+
T Consensus 2 ~~l~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~ 78 (250)
T PRK14240 2 GKISVKDLDLFYGDF---QALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78 (250)
T ss_pred CeEEEEEEEEEECCc---eeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 568999999999743 589999999999999999999999999999999999863 69999999999874 45
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHHh----h--hhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFISG----L--QEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~~----l--p~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
...+|++++|+||+|.+|+.|++||+...... .+.+.. + .+++.........+||||||||++||
T Consensus 79 ~~~~~~~i~~~~q~~~~~~~t~~~ni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 158 (250)
T PRK14240 79 VNQLRKRVGMVFQQPNPFPMSIYDNVAYGPRTHGIKDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQRLCIA 158 (250)
T ss_pred hHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHHHHHH
Confidence 56789999999999999999999999622111 111111 1 11223345667789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|||+.+|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 159 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~~ 236 (250)
T PRK14240 159 RALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFGDTVDLFTNP 236 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 9999999999999999999999999999999988778899999999998865 9999999999999999999997653
|
|
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-40 Score=362.05 Aligned_cols=205 Identities=34% Similarity=0.575 Sum_probs=171.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC--CCHHHHhcc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--FQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~~ 462 (1236)
++++||+++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+...++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGD---FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECC---eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 478999999963 469999999999999999999999999999999999999999999999999853 344567889
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
++|++|++.+|. .|++||+.++.. ..+.++..+. +.+.+..+ |++........+||||||||++||||+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al 150 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEER-----ALELLEKV--GLADKADAYPAQLSGGQQQRVAIARAL 150 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHH-----HHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHH
Confidence 999999999886 599999987532 1222221111 12233333 444445556679999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++
T Consensus 151 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 151 AMNPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred hcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999998854 7899999999999965 999999999974
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-40 Score=370.43 Aligned_cols=223 Identities=30% Similarity=0.484 Sum_probs=183.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-----AGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~~ 456 (1236)
-++++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999963 46999999999999999999999999999999999999875 8999999999864 334
Q ss_pred HHHhcceEEEccCCCCCch-hHHHHHhcCCC--CC-CHHHHHHH----HHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 457 KWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HA-TKEEIQAA----AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~-~~~~~~~~----~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
..+|+.++|++|++.+|.. |+.||+.++.. .. .+++..+. ++..++.+. +.......+.+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-------l~~~~~~~~~~LS~G~ 153 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDE-------VKDRLKTPATGLSGGQ 153 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchh-------hhhhhcCCcccCCHHH
Confidence 5678889999999998875 99999987532 11 22332222 222222221 1122334567899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|||++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|++++
T Consensus 154 ~qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~ 233 (252)
T PRK14272 154 QQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQ 233 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHH
Confidence 99999999999999999999999999999999999999998778999999999999875 99999999999999999999
Q ss_pred ccccccchh
Q 040099 608 LLENPYGAY 616 (1236)
Q Consensus 608 l~~~~~~~y 616 (1236)
++..+...+
T Consensus 234 ~~~~~~~~~ 242 (252)
T PRK14272 234 LFTNPRDER 242 (252)
T ss_pred HHhCcCcHH
Confidence 876543333
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=374.70 Aligned_cols=215 Identities=28% Similarity=0.435 Sum_probs=179.8
Q ss_pred cccEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----C-
Q 040099 1008 MGEVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK----L- 1080 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~----i- 1080 (1236)
.+.|+++|++++|+.++ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .
T Consensus 4 ~~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~ 83 (289)
T PRK13645 4 SKDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIK 83 (289)
T ss_pred cceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEccccccccc
Confidence 46799999999997542 1359999999999999999999999999999999999999999999999999852 2
Q ss_pred ChHHHhcceEEEcCCC--CCChhhHHHHHHHHh---hh-----chHHHhhhh--chh-hhhcCCCCCCChhHHHHHHHHH
Q 040099 1081 QVKWLRQQMGVVSQEP--VLFSDTIRANIAEMA---NA-----NGFISGLQE--GYD-TLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1081 ~~~~lR~~i~~V~Qdp--~LF~gTIreNL~~~a---~~-----~~~i~~lp~--Gld-t~vge~G~~LSGGQrQRlaLAR 1147 (1236)
+...+|++++|+||+| .+|..|++||+.-.. +. .+.+..+-+ |+. ........+||||||||++|||
T Consensus 84 ~~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~lar 163 (289)
T PRK13645 84 EVKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNLGENKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVALAG 163 (289)
T ss_pred cHHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHHHH
Confidence 4567888999999998 478889999995211 00 011111111 332 2345667899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+.+|++|||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 164 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 241 (289)
T PRK13645 164 IIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIGSPFEIFSN 241 (289)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 99999999999999999999999999999998753 789999999999885 4999999999999999999998654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=372.85 Aligned_cols=219 Identities=33% Similarity=0.533 Sum_probs=184.8
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~--~~ 455 (1236)
..|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.+ .+
T Consensus 38 ~~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~ 114 (285)
T PRK14254 38 TVIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114 (285)
T ss_pred ceEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999997 689999999999864 34
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC--C---CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH--A---TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~--~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
...++++++||+|++.+|+.|++||+.++... . ..+++.++++..++...+ ....+.++.+|||||||
T Consensus 115 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i-------~~~~~~~~~~LSgGe~q 187 (285)
T PRK14254 115 PVALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALWDEV-------KDQLDSSGLDLSGGQQQ 187 (285)
T ss_pred hHhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHcCCCchh-------HHHHhCCcccCCHHHHH
Confidence 55678899999999999988999999875211 1 123455555555443222 12345667799999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEE-EEECCEEEEEeCcccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIA-VIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~-vl~~G~i~~~g~~~~l 608 (1236)
|++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++
T Consensus 188 rv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~ 267 (285)
T PRK14254 188 RLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKI 267 (285)
T ss_pred HHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHH
Confidence 999999999999999999999999999999999999998777899999999999875 99975 5799999999999888
Q ss_pred ccc
Q 040099 609 LEN 611 (1236)
Q Consensus 609 ~~~ 611 (1236)
..+
T Consensus 268 ~~~ 270 (285)
T PRK14254 268 FEN 270 (285)
T ss_pred HhC
Confidence 654
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-40 Score=370.06 Aligned_cols=225 Identities=27% Similarity=0.443 Sum_probs=185.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee-----cCCCCHHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN-----LKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----~~~~~~~~ 458 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGP---RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCC---ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 4899999999963 469999999999999999999999999999999999999999999999998 77665543
Q ss_pred ----HhcceEEEccCCC--CCc-hhHHHHHhcCC---CCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChH
Q 040099 459 ----IREKIGLVSQEPV--LLS-SSIRDNIAYGK---THATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGG 527 (1236)
Q Consensus 459 ----~r~~i~~v~Q~~~--l~~-~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgG 527 (1236)
+++.++||+|++. ++. .|+.+|+.+.. .....++..+ .+++++..+ |++ +..+..+.+||||
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LS~G 155 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRA-----TAGDWLERV--EIDAARIDDLPTTFSGG 155 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHH-----HHHHHHHHc--CCChhHHhCCCccCCHH
Confidence 3567999999984 343 48899986521 1111122211 134555665 443 4567788899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+
T Consensus 156 q~qrl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~ 235 (258)
T PRK11701 156 MQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGL 235 (258)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999988753 7899999999999975 99999999999999999
Q ss_pred cccccccccchhhh
Q 040099 605 HSELLENPYGAYNR 618 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~ 618 (1236)
++++..++...|.+
T Consensus 236 ~~~~~~~~~~~~~~ 249 (258)
T PRK11701 236 TDQVLDDPQHPYTQ 249 (258)
T ss_pred HHHHhcCCCCHHHH
Confidence 99987654344443
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-40 Score=370.70 Aligned_cols=218 Identities=33% Similarity=0.499 Sum_probs=183.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 456 (1236)
.++++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGS---FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECC---EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 4899999999963 4699999999999999999999999999999999999974 79999999999853 345
Q ss_pred HHHhcceEEEccCCCCCc-hhHHHHHhcCCCC---CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 457 KWIREKIGLVSQEPVLLS-SSIRDNIAYGKTH---ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~---~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
..+|+.++|++|++.+|. .|++||+.++... .+. +++.++++..++.+++ .........+|||||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-------~~~~~~~~~~LS~G~ 153 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEV-------KDRLDKPGGGLSGGQ 153 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhh-------hhHhhCCcccCCHHH
Confidence 567889999999999887 5999999875311 111 2334444444443222 233455667899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcCeEEEEE------CCEEEE
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQ------QGKIVE 601 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad~i~vl~------~G~i~~ 601 (1236)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+. .||+|++|+ +|+|++
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~ 233 (258)
T PRK14241 154 QQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVE 233 (258)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEe
Confidence 9999999999999999999999999999999999999999877789999999999986 599999997 899999
Q ss_pred EeCccccccc
Q 040099 602 KGTHSELLEN 611 (1236)
Q Consensus 602 ~g~~~~l~~~ 611 (1236)
.|++++++..
T Consensus 234 ~~~~~~~~~~ 243 (258)
T PRK14241 234 IDDTEKIFSN 243 (258)
T ss_pred cCCHHHHHhC
Confidence 9999998754
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-40 Score=360.60 Aligned_cols=205 Identities=27% Similarity=0.491 Sum_probs=171.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..+++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999963 469999999999999999999999999999999999999999999999988753 4577899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
|++|++.++.. |++||+.++.. .....+..+ .+.+++..+ |++........+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~ 146 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARR-----RIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHD 146 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHH-----HHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcC
Confidence 99999998875 99999987421 111111111 122334444 455455566678999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|+++||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 147 p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 147 PELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred CCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 99999999999999999999999998875 47899999999999865 9999999999998754
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=366.66 Aligned_cols=207 Identities=25% Similarity=0.441 Sum_probs=180.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... .|+.+
T Consensus 4 l~~~~l~~~~~~---~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~i 80 (241)
T PRK10895 4 LTAKNLAKAYKG---RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPLHARARRGI 80 (241)
T ss_pred EEEeCcEEEeCC---EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHHhCe
Confidence 789999999974 35999999999999999999999999999999999999999999999999998877544 57889
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh-------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA-------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a-------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+|+||++.+|.. |++||+.-.. .+.++++.+ |++.........||||||||++||||++++|++
T Consensus 81 ~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 158 (241)
T PRK10895 81 GYLPQEASIFRRLSVYDNLMAVLQIRDDLSAEQREDRANELMEEF--HIEHLRDSMGQSLSGGERRRVEIARALAANPKF 158 (241)
T ss_pred EEeccCCcccccCcHHHHHhhhhhcccccCHHHHHHHHHHHHHHc--CCHHHhhcchhhCCHHHHHHHHHHHHHhcCCCE
Confidence 999999998875 9999985211 112223322 566666677789999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+...+.+.++++. +++|+|++||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 159 lllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 227 (241)
T PRK10895 159 ILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHGTPTEILQD 227 (241)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeCCHHHHhcC
Confidence 99999999999999999999998765 47899999999987754 999999999999999999998753
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=370.13 Aligned_cols=211 Identities=27% Similarity=0.418 Sum_probs=182.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
-++++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 24 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 100 (271)
T PRK14238 24 VFDTQNLNLWYGED---HALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSYSV 100 (271)
T ss_pred EEEEeeeEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccccH
Confidence 48999999999743 58999999999999999999999999999999999987 699999999999853 455
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHh---hh------chHHHhhh------hchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMA---NA------NGFISGLQ------EGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a---~~------~~~i~~lp------~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||+|.+|..|++||+.... +. ...+...- +++.......+..||||||||++|||
T Consensus 101 ~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~~LSgGe~qrv~lar 180 (271)
T PRK14238 101 EELRTNVGMVFQKPNPFPKSIYDNVTYGPKIHGIKDKKTLDEIVEKSLRGAAIWDELKDRLHDNAYGLSGGQQQRLCIAR 180 (271)
T ss_pred HHHhhhEEEEecCCccccccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchHHHHHhcCcccCCHHHHHHHHHHH
Confidence 67889999999999999999999996211 11 11111111 23445566788899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++..++
T Consensus 181 aL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 257 (271)
T PRK14238 181 CLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYDDTDKIFSNP 257 (271)
T ss_pred HHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcCC
Confidence 999999999999999999999999999999998778999999999999865 9999999999999999999998653
|
|
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-40 Score=373.46 Aligned_cols=212 Identities=31% Similarity=0.506 Sum_probs=179.8
Q ss_pred EEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC----ChHH
Q 040099 1011 VQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL----QVKW 1084 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i----~~~~ 1084 (1236)
|+++||+++|+++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... +...
T Consensus 3 l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~ 82 (280)
T PRK13649 3 INLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82 (280)
T ss_pred EEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHHH
Confidence 78999999997431 13599999999999999999999999999999999999999999999999998764 3567
Q ss_pred HhcceEEEcCCC--CCChhhHHHHHHHHh---hh-----chHHHh-hh-hchh-hhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEP--VLFSDTIRANIAEMA---NA-----NGFISG-LQ-EGYD-TLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp--~LF~gTIreNL~~~a---~~-----~~~i~~-lp-~Gld-t~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|++|+|+||+| .+|+.|++||+.-.. +. ...+.. +. -|++ ........+||||||||++|||||++
T Consensus 83 ~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~al~~ 162 (280)
T PRK13649 83 IRKKVGLVFQFPESQLFEETVLKDVAFGPQNFGVSQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAGILAM 162 (280)
T ss_pred HHhheEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHHHHHc
Confidence 889999999998 688899999995211 11 011111 11 1554 24566778999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|++|||||||++||+++.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 163 ~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 235 (280)
T PRK13649 163 EPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSGKPKDIFQD 235 (280)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999875 37899999999999865 999999999999999999998764
|
|
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-40 Score=367.90 Aligned_cols=214 Identities=29% Similarity=0.404 Sum_probs=182.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccCChHH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i~~~~ 1084 (1236)
.++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++.+.+...
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 79 (250)
T PRK14247 3 KIEIRDLKVSFGQV---EVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDVIE 79 (250)
T ss_pred eEEEEeeEEEECCe---eeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCHHH
Confidence 48899999999743 589999999999999999999999999999999999974 6999999999998888888
Q ss_pred HhcceEEEcCCCCCC-hhhHHHHHHHHhhh--------------chHHHhhhhch----hhhhcCCCCCCChhHHHHHHH
Q 040099 1085 LRQQMGVVSQEPVLF-SDTIRANIAEMANA--------------NGFISGLQEGY----DTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF-~gTIreNL~~~a~~--------------~~~i~~lp~Gl----dt~vge~G~~LSGGQrQRlaL 1145 (1236)
+|++++|+||+|.+| +.|++||+.-.... .+.++.+ |+ +........+||||||||++|
T Consensus 80 ~~~~i~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~~~~LSgG~~qrv~l 157 (250)
T PRK14247 80 LRRRVQMVFQIPNPIPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKA--QLWDEVKDRLDAPAGKLSGGQQQRLCI 157 (250)
T ss_pred HhccEEEEeccCccCCCCcHHHHHHHHHHhccccCCHHHHHHHHHHHHHHc--CCCcchhhhhcCCcccCCHHHHHHHHH
Confidence 999999999999755 67999999521110 1111111 22 233456678899999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
||||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|++|++++.|+++++.+.+.
T Consensus 158 aral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~ 237 (250)
T PRK14247 158 ARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWGPTREVFTNPR 237 (250)
T ss_pred HHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEECCHHHHHcCCc
Confidence 9999999999999999999999999999999999877899999999999985 599999999999999999999987544
Q ss_pred cccH
Q 040099 1225 GIYT 1228 (1236)
Q Consensus 1225 g~y~ 1228 (1236)
..+.
T Consensus 238 ~~~~ 241 (250)
T PRK14247 238 HELT 241 (250)
T ss_pred cHHH
Confidence 3343
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=367.45 Aligned_cols=211 Identities=30% Similarity=0.440 Sum_probs=179.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--C---CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--P---SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~---~~G~I~idG~di~~i--~~ 1082 (1236)
-++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++ | ++|+|.+||.++... +.
T Consensus 5 ~l~~~~l~~~~~~~---~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14239 5 ILQVSDLSVYYNKK---KALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRTDT 81 (252)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCcccch
Confidence 48999999999743 58999999999999999999999999999999999954 6 499999999998643 34
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHh---hh------ch----HHHhh--hhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMA---NA------NG----FISGL--QEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a---~~------~~----~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|+.++||||+|.+|+.|++||+.-.. +. .+ ..+.+ ..++.+..+....+||||||||++|||
T Consensus 82 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 161 (252)
T PRK14239 82 VDLRKEIGMVFQQPNPFPMSIYENVVYGLRLKGIKDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQQQRVCIAR 161 (252)
T ss_pred HhhhhcEEEEecCCccCcCcHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHHHHHHHHHH
Confidence 57788999999999999999999995211 11 01 11111 111234456777899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 238 (252)
T PRK14239 162 VLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYNDTKQMFMNP 238 (252)
T ss_pred HHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCC
Confidence 999999999999999999999999999999988767899999999998865 9999999999999999999998753
|
|
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-40 Score=368.94 Aligned_cols=219 Identities=32% Similarity=0.449 Sum_probs=188.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCCC--CH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKEF--QL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~~--~~ 456 (1236)
.+.+++.+++|. +.++|+|+||++++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... +.
T Consensus 8 ~~~~~~~~~~~~---~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYG---NFMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeC---CEEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 488999999995 24699999999999999999999999999999999999987 799999999998643 34
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
..+++.|+|++|++.+|..|++|||.++... ...+++.++++.+++.+.+.. ..++.+.+||||||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~-------~~~~~~~~LS~G~~qr 157 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKD-------KLKVSGLSLSGGQQQR 157 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhh-------hhhCCcccCCHHHHHH
Confidence 4677889999999999999999999986321 112456666776666544322 2346677999999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEE--------CCEEEEE
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQ--------QGKIVEK 602 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~--------~G~i~~~ 602 (1236)
++|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|++++.
T Consensus 158 v~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~ 237 (261)
T PRK14263 158 LCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEM 237 (261)
T ss_pred HHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEe
Confidence 99999999999999999999999999999999999998778899999999998865 99999996 8999999
Q ss_pred eCcccccccc
Q 040099 603 GTHSELLENP 612 (1236)
Q Consensus 603 g~~~~l~~~~ 612 (1236)
|+++++++++
T Consensus 238 g~~~~~~~~~ 247 (261)
T PRK14263 238 GPTAQIFQNP 247 (261)
T ss_pred CCHHHHHhCC
Confidence 9999987653
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-40 Score=370.30 Aligned_cols=227 Identities=23% Similarity=0.422 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCC------CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH
Q 040099 384 DIELKDVNFSYPAR------PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 457 (1236)
-|+++||+++|+.. +++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 48999999999631 124699999999999999999999999999999999999999999999999998765555
Q ss_pred HHhcceEEEccCCC--CCc-hhHHHHHhcCCC---CCC----HHHHHHHHHHhccH-HHHHhCCCCccccccCCCCCCCh
Q 040099 458 WIREKIGLVSQEPV--LLS-SSIRDNIAYGKT---HAT----KEEIQAAAEAANAS-HFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~--l~~-~ti~~ni~~g~~---~~~----~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
..+++++||+|++. +++ .|+.+|+.++.. ... .+++.++++..++. +.. .....+|||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~~LS~ 152 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHA-----------SYYPHMLAP 152 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCChHHH-----------hcCchhcCH
Confidence 66678999999985 444 389999875311 111 23455556665552 222 233458999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
|||||++|||||+.+|++|||||||++||+.+...+.+.|.++.+ ++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 153 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 153 GQKQRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999998853 7899999999999976 9999999999999999
Q ss_pred Cccccccccc-chhhhhHH
Q 040099 604 THSELLENPY-GAYNRLIR 621 (1236)
Q Consensus 604 ~~~~l~~~~~-~~y~~~~~ 621 (1236)
+++++...+. ..+++++.
T Consensus 233 ~~~~~~~~~~~~~~~~~~~ 251 (267)
T PRK15112 233 STADVLASPLHELTKRLIA 251 (267)
T ss_pred CHHHHhcCCCCHHHHHHHH
Confidence 9999876532 33444543
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-40 Score=371.38 Aligned_cols=208 Identities=30% Similarity=0.489 Sum_probs=181.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++|+.+ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++...+...++++++
T Consensus 4 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 81 (277)
T PRK13652 4 IETRDLCYSYSGS--KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENIREVRKFVG 81 (277)
T ss_pred EEEEEEEEEeCCC--CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhheE
Confidence 7899999999643 25899999999999999999999999999999999999999999999999998877788899999
Q ss_pred EEcCCC--CCChhhHHHHHHHHh---h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1091 VVSQEP--VLFSDTIRANIAEMA---N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1091 ~V~Qdp--~LF~gTIreNL~~~a---~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
||||+| .+|+.|++||+.-.. + +.+++..+ |+..........||||||||++|||||+.+|++|
T Consensus 82 ~v~q~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Gq~qrl~laraL~~~p~ll 159 (277)
T PRK13652 82 LVFQNPDDQIFSPTVEQDIAFGPINLGLDEETVAHRVSSALHML--GLEELRDRVPHHLSGGEKKRVAIAGVIAMEPQVL 159 (277)
T ss_pred EEecCcccccccccHHHHHHhHHHHcCCCHHHHHHHHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 999998 478889999995111 1 11112211 4444456667899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 160 ilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 228 (277)
T PRK13652 160 VLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYGTVEEIFLQ 228 (277)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEECCHHHHhcC
Confidence 99999999999999999999998754 789999999999995 5999999999999999999999764
|
|
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-40 Score=363.44 Aligned_cols=211 Identities=34% Similarity=0.515 Sum_probs=179.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. .++.++
T Consensus 1 i~i~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGS---FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECC---eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 478999999963 469999999999999999999999999999999999999999999999999876543 467899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|++ |++||+.++... .+ .+++.++++..++.+ .......+||||||||++||||
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~lS~G~~qrl~lara 144 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELVQLEG-----------LGDRYPNQLSGGQRQRVALARA 144 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHcCCHh-----------HhhCChhhCCHHHHHHHHHHHH
Confidence 99999999975 999999876431 11 122333444443333 3344456899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++++|+++||||||++||++++..+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 145 l~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 145 LAVEPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999999999999998754 7899999999999865 999999999999999999998754
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=366.60 Aligned_cols=212 Identities=29% Similarity=0.433 Sum_probs=179.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
.|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~~~ 80 (251)
T PRK14251 4 IISAKDVHLSYGNY---EALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKMDL 80 (251)
T ss_pred eEEEEeeEEEECCe---eeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccchH
Confidence 48899999999743 58999999999999999999999999999999999997 479999999999864 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHHHhh-h-hch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFISGL-Q-EGY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i~~l-p-~Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|+.++|++|++.+|+.|++||+.-..... ..+..+ . -|+ .........+||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~lar 160 (251)
T PRK14251 81 VELRKEVGMVFQQPTPFPFSVYDNVAYGLKIAGVKDKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQRICIAR 160 (251)
T ss_pred HHhhccEEEEecCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHHHHHHHH
Confidence 67788999999999999999999995211110 011111 0 023 12345667899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
|++++|++|||||||++||+++...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+.
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 238 (251)
T PRK14251 161 ALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAGPTEEMFIAPK 238 (251)
T ss_pred HHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 999999999999999999999999999999988777899999999999865 99999999999999999999976533
|
|
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=372.24 Aligned_cols=211 Identities=29% Similarity=0.503 Sum_probs=179.6
Q ss_pred cEEEeEEEEECCCCC--CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC----ChH
Q 040099 1010 EVQFLRVSFKYPTRP--HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL----QVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~--~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i----~~~ 1083 (1236)
.|+++||+++|++.. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++... +..
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 378999999997321 13599999999999999999999999999999999999999999999999998653 345
Q ss_pred HHhcceEEEcCCC--CCChhhHHHHHHHHh------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEP--VLFSDTIRANIAEMA------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp--~LF~gTIreNL~~~a------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARA 1148 (1236)
..|+.++|+||+| .+|..|++||+.-.. .+.+++..+ |++ .........||||||||++||||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~~LSgGq~qrl~lara 159 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGFSEDEAKEKALKWLKKV--GLSEDLISKSPFELSGGQMRRVAIAGV 159 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCChhHhhCCcccCCHHHHHHHHHHHH
Confidence 6788999999998 588889999995111 111122221 554 24466778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+.+|++|||||||++||+.+...+.+.|+++. ++.|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 160 l~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 235 (287)
T PRK13641 160 MAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHASPKEIFSD 235 (287)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999999999875 4789999999999986 5999999999999999999998764
|
|
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-40 Score=362.18 Aligned_cols=209 Identities=33% Similarity=0.508 Sum_probs=180.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||+++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.. ++.++
T Consensus 2 l~~~~l~~~~~~---~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~--~~~i~ 74 (232)
T PRK10771 2 LKLTDITWLYHH---L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPPS--RRPVS 74 (232)
T ss_pred eEEEEEEEEECC---c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCChh--hccEE
Confidence 689999999963 2 2399999999999999999999999999999999999999999999998765442 56899
Q ss_pred EEccCCCCCch-hHHHHHhcCC-CC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGK-TH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|.+ |+.||+.++. +. ..++++.++++..++.+++.+.| ..||||||||++||||
T Consensus 75 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrv~lara 143 (232)
T PRK10771 75 MLFQENNLFSHLTVAQNIGLGLNPGLKLNAAQREKLHAIARQMGIEDLLARLP-----------GQLSGGQRQRVALARC 143 (232)
T ss_pred EEecccccccCCcHHHHHhcccccccCCCHHHHHHHHHHHHHcCcHHHHhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999998753 11 11344666777777666655554 4899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++++|+++||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+++++...
T Consensus 144 l~~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g~~~~~~~~ 220 (232)
T PRK10771 144 LVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDGPTDELLSG 220 (232)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999865 999999999999999999888754
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-40 Score=373.12 Aligned_cols=214 Identities=32% Similarity=0.538 Sum_probs=185.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|+. ++.+|+||||+|++||++|++||||||||||+|+|+|+..|++|+|.++|.+...- ....|++|
T Consensus 4 ~i~~~~l~k~~~~--~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~-~~~~~~~i 80 (293)
T COG1131 4 VIEVRNLTKKYGG--DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKE-PAKVRRRI 80 (293)
T ss_pred eeeecceEEEeCC--CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccC-HHHHHhhe
Confidence 4788999999962 35799999999999999999999999999999999999999999999999998655 66788899
Q ss_pred EEEccCCCCCch-hHHHHHhcCC-----CC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGK-----TH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~-----~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
||+||+|.+++. |++||+.|.. +. ..++++.+.++..++.+. ...+...||+|||||++||+
T Consensus 81 gy~~~~~~~~~~lT~~e~l~~~~~l~~~~~~~~~~~~~~~l~~~~L~~~-----------~~~~~~~lS~G~kqrl~ia~ 149 (293)
T COG1131 81 GYVPQEPSLYPELTVRENLEFFARLYGLSKEEAEERIEELLELFGLEDK-----------ANKKVRTLSGGMKQRLSIAL 149 (293)
T ss_pred EEEccCCCCCccccHHHHHHHHHHHhCCChhHHHHHHHHHHHHcCCchh-----------hCcchhhcCHHHHHHHHHHH
Confidence 999999998865 9999998742 21 124566777776665441 13445689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-C-ceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-N-RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~-~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||+.+|++|||||||++|||.+...+.+.|+++.+ + +|++++||.++.+.. ||+|++|++|+++..|+.+++...
T Consensus 150 aL~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g~~~~l~~~ 227 (293)
T COG1131 150 ALLHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEGTPEELKEK 227 (293)
T ss_pred HHhcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeCCHHHHHHh
Confidence 99999999999999999999999999999999875 4 699999999999987 999999999999999998887543
|
|
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=384.40 Aligned_cols=210 Identities=21% Similarity=0.407 Sum_probs=182.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.++|.++.+++...+|+++
T Consensus 3 ~L~~~nls~~y~~---~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~~~~~~~i 79 (402)
T PRK09536 3 MIDVSDLSVEFGD---TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSARAASRRV 79 (402)
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCHHHHhcce
Confidence 4889999999974 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHh-----hh-------chHHHhh-h-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMA-----NA-------NGFISGL-Q-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a-----~~-------~~~i~~l-p-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++|||++.+ |+.|++||+.-.. .. .+.+..+ . -|+.........+||||||||++|||||+++|+
T Consensus 80 g~v~q~~~l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~~~~~~~~LSgGerQRv~IArAL~~~P~ 159 (402)
T PRK09536 80 ASVPQDTSLSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQFADRPVTSLSGGERQRVLLARALAQATP 159 (402)
T ss_pred EEEccCCCCCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 999999987 6789999985110 00 0111111 1 144444456677899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||||++||+.+...+.+.|+++. +++|+|+++|+++.+. .||||++|++|++++.|++++++..
T Consensus 160 iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~~~ev~~~ 229 (402)
T PRK09536 160 VLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGPPADVLTA 229 (402)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecCHHHHhCc
Confidence 999999999999999999999999875 4789999999999995 5999999999999999999998754
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-40 Score=368.92 Aligned_cols=219 Identities=32% Similarity=0.459 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-----CCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-----QAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-----~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++.. .+.
T Consensus 20 ~l~~~nl~~~~~~---~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~~~~ 96 (274)
T PRK14265 20 VFEVEGVKVFYGG---FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINS 96 (274)
T ss_pred eEEEeeEEEEeCC---eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEecccccchh
Confidence 6999999999963 4699999999999999999999999999999999999863 69999999999864 334
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
..+|++|+|++|++.+|+.|+.||+.++.... .++++.++++.+++.+++. ......+..||||||||
T Consensus 97 ~~~~~~i~~v~q~~~l~~~tv~~nl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~-------~~~~~~~~~LSgGq~qr 169 (274)
T PRK14265 97 VKLRRQVGMVFQRPNPFPKSIYENIAFAPRANGYKGNLDELVEDSLRRAAIWEEVK-------DKLKEKGTALSGGQQQR 169 (274)
T ss_pred HHHhhcEEEEccCCccccccHHHHHHhHHHhcCchHHHHHHHHHHHHHcccchhhH-------HHhcCCcccCCHHHHHH
Confidence 56788999999999999889999998863211 1233445555555543332 23445667899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEE---------CCEEEE
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQ---------QGKIVE 601 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~---------~G~i~~ 601 (1236)
++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++++|+ +|++++
T Consensus 170 v~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G~~~~ 249 (274)
T PRK14265 170 LCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRGKLVE 249 (274)
T ss_pred HHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCceEEE
Confidence 99999999999999999999999999999999999998778899999999999865 99999998 899999
Q ss_pred EeCcccccccc
Q 040099 602 KGTHSELLENP 612 (1236)
Q Consensus 602 ~g~~~~l~~~~ 612 (1236)
.|+.+++...+
T Consensus 250 ~g~~~~~~~~~ 260 (274)
T PRK14265 250 FSPTEQMFGSP 260 (274)
T ss_pred eCCHHHHHhCC
Confidence 99999987653
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-40 Score=369.17 Aligned_cols=212 Identities=31% Similarity=0.489 Sum_probs=182.2
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--C
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--L 1080 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i 1080 (1236)
.+.++++||+++|+++ ++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++.. .
T Consensus 23 ~~~l~~~nl~~~~~~~---~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~ 99 (272)
T PRK14236 23 QTALEVRNLNLFYGDK---QALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV 99 (272)
T ss_pred CcEEEEEEEEEEECCe---eEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc
Confidence 4569999999999743 589999999999999999999999999999999999984 89999999999865 3
Q ss_pred ChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHHHh------hhhchhhhhcCCCCCCChhHHHHHHH
Q 040099 1081 QVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFISG------LQEGYDTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1081 ~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i~~------lp~Gldt~vge~G~~LSGGQrQRlaL 1145 (1236)
+...+|++++|+||++.+|+.|++||+.-..... +.+.. +++.+.+..+..+..||||||||++|
T Consensus 100 ~~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~l 179 (272)
T PRK14236 100 DVAELRRRVGMVFQRPNPFPKSIYENVVYGLRLQGINNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQQRLVI 179 (272)
T ss_pred CHHHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHHHHHHH
Confidence 4567899999999999999999999995221110 11111 11112245667788999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 180 aral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 257 (272)
T PRK14236 180 ARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYGDTDTLFTS 257 (272)
T ss_pred HHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecCCHHHHhcC
Confidence 99999999999999999999999999999999998778899999999999865 999999999999999999999865
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.1e-40 Score=365.97 Aligned_cols=212 Identities=30% Similarity=0.460 Sum_probs=180.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc---cCC--CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF---YDP--SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~---~~~--~~G~I~idG~di~~i--~~ 1082 (1236)
.++++|++++|++ .++|+|+||+|++||.+||+||||||||||+++|.|+ ++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 79 (250)
T PRK14245 3 KIDARDVNFWYGD---FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQV 79 (250)
T ss_pred EEEEEEEEEEECC---EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccccH
Confidence 4789999999974 3589999999999999999999999999999999997 454 589999999998754 35
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh-------------hchHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN-------------ANGFISGL--QEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~-------------~~~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++||||+|.+|..|++||+..... +.+.++.+ ++.+++.....+.+||||||||++|||
T Consensus 80 ~~~~~~i~~v~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 159 (250)
T PRK14245 80 DELRKNVGMVFQRPNPFPKSIFENVAYGLRVNGVKDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHHHHHHHH
Confidence 678899999999999999999999952111 01111111 111234456778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++.
T Consensus 160 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~~~~~~~~~~~ 237 (250)
T PRK14245 160 AMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYDDTKKIFTNPE 237 (250)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEECCHHHHhcCCC
Confidence 999999999999999999999999999999998778999999999999855 99999999999999999999987543
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=369.59 Aligned_cols=208 Identities=28% Similarity=0.503 Sum_probs=181.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC-hHHHhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-VKWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-~~~lR~~i 1089 (1236)
++++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|++||.++...+ ...+++.+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~i 79 (274)
T PRK13644 2 IRLENVSYSYPDG--TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSKLQGIRKLV 79 (274)
T ss_pred EEEEEEEEEcCCC--CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCccccHHHHHhhe
Confidence 6899999999642 35999999999999999999999999999999999999999999999999998765 46788899
Q ss_pred EEEcCCCC--CChhhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEPV--LFSDTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp~--LF~gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+|+||+|. +++.|++|||.-... +.+.++.+ |++.........||||||||++|||||+.+|+|
T Consensus 80 ~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~laral~~~p~l 157 (274)
T PRK13644 80 GIVFQNPETQFVGRTVEEDLAFGPENLCLPPIEIRKRVDRALAEI--GLEKYRHRSPKTLSGGQGQCVALAGILTMEPEC 157 (274)
T ss_pred EEEEEChhhhcccchHHHHHHhhHHHcCCCHHHHHHHHHHHHHHC--CCHHHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 99999985 677899999952111 11122221 566666677889999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||++||+.+...+.+.|+++. +++|+|++||+++.+..||+|++|++|++++.|+++++...
T Consensus 158 llLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 225 (274)
T PRK13644 158 LIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHDADRIIVMDRGKIVLEGEPENVLSD 225 (274)
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHhhCCEEEEEECCEEEEECCHHHHhcC
Confidence 99999999999999999999998865 47899999999999988999999999999999999998764
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=368.83 Aligned_cols=220 Identities=30% Similarity=0.528 Sum_probs=186.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-----CcEEEECCeecCC--CC
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-----AGEVLIDGVNLKE--FQ 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-----~G~i~~~g~~~~~--~~ 455 (1236)
+.|+++|++|+|++ ..+|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.. .+
T Consensus 6 ~~l~~~nl~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDT---QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCC---eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 36999999999963 35999999999999999999999999999999999999985 8999999998753 34
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCC---CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
...+|+.++|++|++.+|+.|++||+.++... .+ .+++.++++..++.+++. ...++.+..|||||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-------~~~~~~~~~LSgGq 155 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIK-------HKIHKSALDLSGGQ 155 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhh-------hHhcCCcccCCHHH
Confidence 45678899999999999999999999875211 01 223445555555544332 23456677999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC-----CEEE
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ-----GKIV 600 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~-----G~i~ 600 (1236)
|||++|||||+++|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |+++
T Consensus 156 ~qrv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~ 235 (261)
T PRK14258 156 QQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLV 235 (261)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEE
Confidence 999999999999999999999999999999999999999864 47999999999999865 999999999 9999
Q ss_pred EEeCcccccccc
Q 040099 601 EKGTHSELLENP 612 (1236)
Q Consensus 601 ~~g~~~~l~~~~ 612 (1236)
+.|+++++...+
T Consensus 236 ~~~~~~~~~~~~ 247 (261)
T PRK14258 236 EFGLTKKIFNSP 247 (261)
T ss_pred EeCCHHHHHhCC
Confidence 999999987654
|
|
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=358.39 Aligned_cols=197 Identities=27% Similarity=0.458 Sum_probs=170.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|++ .++|+|+||++++||.++|+||||||||||+++|.|+++|++|+|.+||.++.+. ..+|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~--~~~~~~i~ 75 (208)
T cd03268 1 LKTNDLTKTYGK---KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN--IEALRRIG 75 (208)
T ss_pred CEEEEEEEEECC---eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch--HHHHhhEE
Confidence 478999999964 3599999999999999999999999999999999999999999999999998764 56788999
Q ss_pred EEcCCCCCC-hhhHHHHHHHHhh--------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1091 VVSQEPVLF-SDTIRANIAEMAN--------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1091 ~V~Qdp~LF-~gTIreNL~~~a~--------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
||||++.+| +.|++||+.-... +.+.++.+ |++.........||||||||++||||++++|++||||||
T Consensus 76 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~llllDEP 153 (208)
T cd03268 76 ALIEAPGFYPNLTARENLRLLARLLGIRKKRIDEVLDVV--GLKDSAKKKVKGFSLGMKQRLGIALALLGNPDLLILDEP 153 (208)
T ss_pred EecCCCccCccCcHHHHHHHHHHhcCCcHHHHHHHHHHc--CCHHHHhhhHhhCCHHHHHHHHHHHHHhcCCCEEEECCC
Confidence 999999888 4799999852211 12222222 455555666778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1162 TSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||++++|++|++++.|
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~g 208 (208)
T cd03268 154 TNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEEG 208 (208)
T ss_pred cccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 99999999999999998865 47899999999999965 9999999999999875
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-40 Score=357.00 Aligned_cols=202 Identities=34% Similarity=0.543 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+++|+. .++|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ .+++.++
T Consensus 1 ~~~~~l~~~~~~-----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~i~ 73 (213)
T TIGR01277 1 LALDKVRYEYEH-----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA--PYQRPVS 73 (213)
T ss_pred CeEEeeeEEeCC-----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC--hhccceE
Confidence 368999999951 568999999999999999999999999999999999999999999999987543 3577899
Q ss_pred EEccCCCCCch-hHHHHHhcCC-CC-----CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGK-TH-----ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~-~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
||+|++.+|.. |++||+.++. +. ..++++.++++..++.+...+.| .+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~t~~en~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------~~LS~G~~qrl~lara 142 (213)
T TIGR01277 74 MLFQENNLFAHLTVRQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADYLDRLP-----------EQLSGGQRQRVALARC 142 (213)
T ss_pred EEeccCccCCCCcHHHHHHhHhhccCCccHHHHHHHHHHHHHcCcHHHhhCCc-----------ccCCHHHHHHHHHHHH
Confidence 99999999875 9999998642 11 12345566667666665555554 4899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
++.+|+++||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|.
T Consensus 143 l~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~~ 212 (213)
T TIGR01277 143 LVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVSD 212 (213)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEecC
Confidence 9999999999999999999999999999998753 7899999999999865 99999999999998874
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-40 Score=375.81 Aligned_cols=207 Identities=28% Similarity=0.462 Sum_probs=177.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++... ...+|+++
T Consensus 4 ~i~~~~l~~~~~~---~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-~~~~~~~i 79 (303)
T TIGR01288 4 AIDLVGVSKSYGD---KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSR-ARLARVAI 79 (303)
T ss_pred EEEEEeEEEEeCC---eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccc-HHHHhhcE
Confidence 4899999999974 3589999999999999999999999999999999999999999999999998754 35678999
Q ss_pred EEEcCCCCCCh-hhHHHHHHHHhhh------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEMANA------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~a~~------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|+||++.+|. .|++||+.-.+.. .++++. -|++.........||||||||++|||||+.+|++|
T Consensus 80 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~ll 157 (303)
T TIGR01288 80 GVVPQFDNLDPEFTVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLESKADVRVALLSGGMKRRLTLARALINDPQLL 157 (303)
T ss_pred EEEeccccCCcCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--CCChhHhcCchhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 99999999885 6999999521111 111111 13333344555689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||++||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 158 lLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 225 (303)
T TIGR01288 158 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEGRPHALIDE 225 (303)
T ss_pred EEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999874 47899999999999965 999999999999999999999764
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-40 Score=368.03 Aligned_cols=211 Identities=27% Similarity=0.410 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCeecCCC-----C
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGVNLKEF-----Q 455 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~-----~ 455 (1236)
-|+++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++... +
T Consensus 4 ~l~~~nl~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 4 IIRVEKLAKTFNQ---HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred EEEEeeEEEEeCC---eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 4899999999963 46999999999999999999999999999999999999986 49999999988643 2
Q ss_pred HHHHhcceEEEccCCCCCc-hhHHHHHhcCCCCC-----------C---HHHHHHHHHHhccHHHHHhCCCCccccccCC
Q 040099 456 LKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHA-----------T---KEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~-----------~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~ 520 (1236)
...++++++|++|++.+|. .|++||+.++.... . .+++.++++..+ ++......
T Consensus 81 ~~~~~~~i~~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~ 149 (262)
T PRK09984 81 IRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVG-----------MVHFAHQR 149 (262)
T ss_pred HHHHHhheEEEccccccccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcC-----------CHHHHhCC
Confidence 3456788999999998887 49999998764211 1 122334444443 33334455
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECC
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQG 597 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G 597 (1236)
..+||||||||++|||||+.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+. .||+|++|++|
T Consensus 150 ~~~LS~G~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g 229 (262)
T PRK09984 150 VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQG 229 (262)
T ss_pred ccccCHHHHHHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECC
Confidence 668999999999999999999999999999999999999999999998853 789999999999875 59999999999
Q ss_pred EEEEEeCcccc
Q 040099 598 KIVEKGTHSEL 608 (1236)
Q Consensus 598 ~i~~~g~~~~l 608 (1236)
++++.|+++++
T Consensus 230 ~i~~~g~~~~~ 240 (262)
T PRK09984 230 HVFYDGSSQQF 240 (262)
T ss_pred EEEEeCCHHHh
Confidence 99999999886
|
|
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-40 Score=365.32 Aligned_cols=218 Identities=28% Similarity=0.463 Sum_probs=182.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i--~~ 1082 (1236)
-|+++||+++|+++ ++|+|+||+|++||+++|+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 3 ~l~~~~l~~~~~~~---~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~~~ 79 (250)
T PRK14262 3 IIEIENFSAYYGEK---KAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQLDV 79 (250)
T ss_pred eEEEEeeEEEeCCc---eeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchhhH
Confidence 38899999999743 589999999999999999999999999999999999984 899999999998653 34
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHHHh-hh-hch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFISG-LQ-EGY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i~~-lp-~Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||+|.+|..|++||+....... +.+.. +. -|+ +...+....+||||||||++|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr~~la~ 159 (250)
T PRK14262 80 TEYRKKVGMVFQKPTPFPMSIYDNVAFGPRIHGVKSKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQRLCIAR 159 (250)
T ss_pred HHhhhhEEEEecCCccCcccHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHHHHHHHH
Confidence 56788999999999999999999996222111 11111 11 022 23456777899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+++...
T Consensus 160 al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~ 239 (250)
T PRK14262 160 ALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYGPTREIVERPKNK 239 (250)
T ss_pred HHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHHhCCCCh
Confidence 999999999999999999999999999999988778999999999998755 9999999999999999999998753333
Q ss_pred cHHh
Q 040099 1227 YTSL 1230 (1236)
Q Consensus 1227 y~~L 1230 (1236)
|.+.
T Consensus 240 ~~~~ 243 (250)
T PRK14262 240 LTEE 243 (250)
T ss_pred HHHH
Confidence 4443
|
|
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-40 Score=382.96 Aligned_cols=199 Identities=33% Similarity=0.495 Sum_probs=171.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----hcceEEEcCCCCCCh-h
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL----RQQMGVVSQEPVLFS-D 1101 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l----R~~i~~V~Qdp~LF~-g 1101 (1236)
.+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|++||.|+.+.+...+ |++++||||++.+|. .
T Consensus 42 ~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~sG~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~l~~~~ 121 (400)
T PRK10070 42 LGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKKIAMVFQSFALMPHM 121 (400)
T ss_pred EEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCEEEECCEECCcCCHHHHHHHHhCCEEEEECCCcCCCCC
Confidence 37999999999999999999999999999999999999999999999999998876554 468999999999997 4
Q ss_pred hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH
Q 040099 1102 TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169 (1236)
Q Consensus 1102 TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~t 1169 (1236)
|++||+.-... +.+.++.+ |++........+||||||||++|||||+.+|+|||||||||+||+.+
T Consensus 122 Tv~enl~~~~~~~~~~~~~~~~~~~e~L~~~--gL~~~~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~ 199 (400)
T PRK10070 122 TVLDNTAFGMELAGINAEERREKALDALRQV--GLENYAHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLI 199 (400)
T ss_pred CHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCChhhhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHH
Confidence 99999962111 11222221 55555666778999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1170 ERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1170 e~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
.+.+++.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|++++++.++...|
T Consensus 200 r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~vL~~G~i~~~g~~~~l~~~~~~~~ 260 (400)
T PRK10070 200 RTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAIMQNGEVVQVGTPDEILNNPANDY 260 (400)
T ss_pred HHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEEEECCEEEecCCHHHHHhCcccHH
Confidence 999999998874 47899999999999865 99999999999999999999987644444
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-40 Score=368.74 Aligned_cols=212 Identities=29% Similarity=0.434 Sum_probs=181.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~l~i~~l~~~~~~~-~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 85 (269)
T PRK13648 7 IIVFKNVSFQYQSD-ASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDNFEKLRKHI 85 (269)
T ss_pred eEEEEEEEEEcCCC-CCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHhhe
Confidence 48999999999753 23589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCC--CChhhHHHHHHHHhh--------hchHHHhhhh--chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1090 GVVSQEPV--LFSDTIRANIAEMAN--------ANGFISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1090 ~~V~Qdp~--LF~gTIreNL~~~a~--------~~~~i~~lp~--Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+|+||+|. ++..|+++|+.-... ..+.+..+-+ |+.........+||||||||++||||++.+|++||
T Consensus 86 ~~v~q~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrl~laral~~~p~lll 165 (269)
T PRK13648 86 GIVFQNPDNQFVGSIVKYDVAFGLENHAVPYDEMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVII 165 (269)
T ss_pred eEEEeChHHhcccccHHHHHHhhHHhcCCCHHHHHHHHHHHHHHcCCchhhhCCcccCCHHHHHHHHHHHHHHcCCCEEE
Confidence 99999984 455689999852110 0111111111 34334556678999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+..||+|++|++|++++.|+++++...
T Consensus 166 LDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 232 (269)
T PRK13648 166 LDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAMEADHVIVMNKGTVYKEGTPTEIFDH 232 (269)
T ss_pred EeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999998753 6899999999999988999999999999999999998764
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-40 Score=366.48 Aligned_cols=215 Identities=26% Similarity=0.391 Sum_probs=174.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCCcEEEECCeecCCCCHHHH-hc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY--DPQAGEVLIDGVNLKEFQLKWI-RE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~-r~ 461 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...+.... +.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999963 46999999999999999999999999999999999994 7999999999999988776554 45
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCCC---------CCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCC-CCChHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKTH---------ATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGI-QLSGGQK 529 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~---------~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~-~LSgGqk 529 (1236)
.++||+|++.+|++ |++||+.+.... .+.++..+ .+.+.+..+ |++. ....... .||||||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~~LS~G~~ 150 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLK-----LLKAKLALL--GMDEEFLNRSVNEGFSGGEK 150 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHH-----HHHHHHHHc--CCchhhcccccccCcCHHHH
Confidence 69999999998876 999999764211 11111111 112223322 3332 2233333 5999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh--cCeEEEEECCEEEEEeCcc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN--ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--ad~i~vl~~G~i~~~g~~~ 606 (1236)
||++|||||+.+|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+.. ||++++|++|++++.|+++
T Consensus 151 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~ 230 (243)
T TIGR01978 151 KRNEILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVE 230 (243)
T ss_pred HHHHHHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHH
Confidence 99999999999999999999999999999999999999885 47899999999999875 7999999999999999987
Q ss_pred ccc
Q 040099 607 ELL 609 (1236)
Q Consensus 607 ~l~ 609 (1236)
++.
T Consensus 231 ~~~ 233 (243)
T TIGR01978 231 LAK 233 (243)
T ss_pred Hhc
Confidence 543
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=382.42 Aligned_cols=211 Identities=32% Similarity=0.489 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++||+++|++ ..+|+|+||+|++||.++|+||||||||||+++|.|+++|++|+|++||.++.+.++ .|+++
T Consensus 19 ~l~l~~v~~~~~~---~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~~--~~r~i 93 (377)
T PRK11607 19 LLEIRNLTKSFDG---QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVPP--YQRPI 93 (377)
T ss_pred eEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH--HHCCE
Confidence 5999999999964 358999999999999999999999999999999999999999999999999987764 47899
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.||.. |++|||.-... +.+.++.+ |+.........+||||||||+||||||+++|++|
T Consensus 94 g~vfQ~~~lfp~ltv~eNi~~~l~~~~~~~~~~~~~v~~~l~~l--~L~~~~~~~~~~LSgGq~QRVaLARAL~~~P~lL 171 (377)
T PRK11607 94 NMMFQSYALFPHMTVEQNIAFGLKQDKLPKAEIASRVNEMLGLV--HMQEFAKRKPHQLSGGQRQRVALARSLAKRPKLL 171 (377)
T ss_pred EEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999976 99999961111 11122221 4444455667789999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||||||+||..+...+.+.|+++. .+.|+|+|||+++.+.. ||+|+||++|++++.|+++++..++...|
T Consensus 172 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~~~~~~~~p~~~~ 245 (377)
T PRK11607 172 LLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGEPEEIYEHPTTRY 245 (377)
T ss_pred EEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcCHHHHHhCCccHH
Confidence 9999999999999999998887764 36899999999999755 99999999999999999999998765544
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-36 Score=359.71 Aligned_cols=458 Identities=16% Similarity=0.158 Sum_probs=334.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccC---CChhHHHHHHHhhHHHHHHHHHH
Q 040099 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEAD---HSTGAIGARLSSDAALVRSLVGD 807 (1236)
Q Consensus 731 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~---~~~G~l~~rls~D~~~i~~~~~~ 807 (1236)
.+.+|..++++...+...+.|+-.....++-.-|-+.+..+-+...-.|+.... +.+-..=.|+.+|+...-+....
T Consensus 88 ~l~~f~~ia~~~v~~~v~~~~L~~~l~~~wR~wLt~~l~~~wl~~~~~y~l~~~~~~~~~dNpDQRi~eDi~~~t~~t~~ 167 (604)
T COG4178 88 QLQVFAIIAGLLVLLNVAQTWLNQMLRLRWREWLTKDLLDRWLDPRRYYRLAQAGGIGLIDNPDQRIQEDIRNFTETTLD 167 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHhcccccCCCChHHhHHHHHHHHHhhHHH
Confidence 355666666677777777888777777777777777777777766633332111 11112236888998877766655
Q ss_pred HHHHHHHHHHHHHHHHHHHH---------------HHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Q 040099 808 TLSLLVQNTATAVVGLVIAF---------------KACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQV 872 (1236)
Q Consensus 808 ~l~~~~~~~~~~v~~~ii~~---------------~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 872 (1236)
....++..+++++...++++ .+...+.++++..+++--+..++..|.+.+..-+..+..+.....
T Consensus 168 l~~g~l~s~islisF~~iLw~lsg~~~~~~~g~~~~I~g~mv~~~i~Ya~~~s~~~~~iGr~Li~LN~~~~~~EA~fR~~ 247 (604)
T COG4178 168 LSFGLLQSVISLISFTGILWSLSGGLAFTIGGFSFGIPGYMVWAVIIYAISASLLTHLIGRPLIRLNFERQKLEADFRYS 247 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcceEeecccccccchHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHH
Confidence 55666666655555444443 222233344444455555555666777777666666677777777
Q ss_pred HHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHH
Q 040099 873 ASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFR 952 (1236)
Q Consensus 873 ~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~ 952 (1236)
+...-++.+.|..|+-|+...++.++..........+..........+......+..++-+.+++-....|++++|++++
T Consensus 248 Lvrv~enaE~IAly~GE~~Er~~l~~~f~~v~~n~~~l~~~~~~l~~~~~gy~~~s~v~P~li~ap~~f~g~i~~G~lmq 327 (604)
T COG4178 248 LVRVRENAEAIALYRGEKVERRRLDDRFDAVLGNWRRLVRAQIRLTWFQLGYGWLSVVLPILIAAPRYFSGQITFGGLMQ 327 (604)
T ss_pred HHHHHhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhHHHHHHHHHhccHhhhcCcChHHHHHH
Confidence 88888899999999999988877777766666654444333333333333344444455556666677889999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccC--CCccccCc-----cCCccccEEEeEEEEECCCCCC
Q 040099 953 VFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKID--SSEYTGRT-----LENVMGEVQFLRVSFKYPTRPH 1025 (1236)
Q Consensus 953 ~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~--~~~~~~~~-----~~~~~g~I~f~~Vsf~Y~~~~~ 1025 (1236)
...++..+...++......+.+..-.+...|+.++.+.....+ .+.+.... .......|+|+|++..-|+.
T Consensus 328 a~~aF~~v~sslswfi~~~~~ia~~rA~~~Rl~~f~~ai~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~nl~l~~p~~-- 405 (604)
T COG4178 328 AVGAFGQVHSSLSWFIDNYDAIADWRATLLRLAEFRQALEAAQMDTEKPARTGRRIDFDDNADHGITLENLSLRTPDG-- 405 (604)
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhccCcccccCcccccccccccccceeEEeeeeEECCCC--
Confidence 9999999999999999999999999999999988875433111 11111100 01114679999999998864
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
...|+++||+|+|||.+-|.|+||||||||++.|.|+++.-+|+|..-. -..+-|+||.|.+=.||+||
T Consensus 406 ~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P~-----------~~~~lflpQ~PY~p~GtLre 474 (604)
T COG4178 406 QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMPA-----------DSALLFLPQRPYLPQGTLRE 474 (604)
T ss_pred CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecCC-----------CCceEEecCCCCCCCccHHH
Confidence 3689999999999999999999999999999999999999999887641 13578999999999999999
Q ss_pred HHH-----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH
Q 040099 1106 NIA-----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168 (1236)
Q Consensus 1106 NL~-----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~ 1168 (1236)
=|+ ..+++.++++++.+- + .-..-||+|||||||+||.|+++|++++|||||||||++
T Consensus 475 ~l~YP~~~~~~~d~~l~~vL~~vgL~~L~~rl~~~-~----~W~~vLS~GEqQRlafARilL~kP~~v~LDEATsALDe~ 549 (604)
T COG4178 475 ALCYPNAAPDFSDAELVAVLHKVGLGDLAERLDEE-D----RWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSALDEE 549 (604)
T ss_pred HHhCCCCCCCCChHHHHHHHHHcCcHHHHHHHhcc-C----cHhhhcChhHHHHHHHHHHHHcCCCEEEEecchhccChH
Confidence 885 455666666665321 1 223579999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEe
Q 040099 1169 SERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1169 te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~ 1206 (1236)
+|..+.+.+++.+.+.|+|.|+||.......++.+-++
T Consensus 550 ~e~~l~q~l~~~lp~~tvISV~Hr~tl~~~h~~~l~l~ 587 (604)
T COG4178 550 TEDRLYQLLKEELPDATVISVGHRPTLWNFHSRQLELL 587 (604)
T ss_pred HHHHHHHHHHhhCCCCEEEEeccchhhHHHHhhheeec
Confidence 99999999999999999999999988877777765554
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=366.94 Aligned_cols=211 Identities=28% Similarity=0.432 Sum_probs=181.8
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CC
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQ 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~ 1081 (1236)
..|+++||+++|+. .++|+|+||+|++||.+||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+
T Consensus 19 ~~l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 95 (267)
T PRK14237 19 IALSTKDLHVYYGK---KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKEIN 95 (267)
T ss_pred eEEEEeeEEEEECC---eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEcccccCC
Confidence 36999999999964 358999999999999999999999999999999999997 579999999999864 34
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhh---h------chHHH----hh--hhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMAN---A------NGFIS----GL--QEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~---~------~~~i~----~l--p~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
...+|+.++||||++.+|..|++||+..... . .+.+. .+ .++++...+..+..||||||||++||
T Consensus 96 ~~~~~~~i~~v~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrl~la 175 (267)
T PRK14237 96 VYEMRKHIGMVFQRPNPFAKSIYENITFALERAGVKDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGGQQQRLCIA 175 (267)
T ss_pred hHHHhcceEEEecCCccccccHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHHHHHHHHHH
Confidence 6678999999999999999999999952111 1 11111 11 11223456778889999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||++++|++|||||||++||+.+...+.+.|+++.++.|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 176 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 252 (267)
T PRK14237 176 RAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYDKTRNIFTN 252 (267)
T ss_pred HHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999998777899999999999855 999999999999999999999765
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-40 Score=367.93 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=183.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC--------CcEEEECCeecCCCCH
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ--------AGEVLIDGVNLKEFQL 456 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~--------~G~i~~~g~~~~~~~~ 456 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++...+.
T Consensus 2 l~~~nl~~~~~~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRH---RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECC---EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 689999999953 46999999999999999999999999999999999999998 9999999999988777
Q ss_pred HHHhcceEEEccCCC-CCchhHHHHHhcCCC-CC---C--HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPV-LLSSSIRDNIAYGKT-HA---T--KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~-l~~~ti~~ni~~g~~-~~---~--~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+++.++|++|++. +|..|++||+.++.. .. . .++..+ .+.+.+..+ |+++..+....+||||||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~LSgG~~ 151 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGE-----IAWQALALA--GATALVGRDVTTLSGGEL 151 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHH-----HHHHHHHHc--CcHhhhcCCcccCCHHHH
Confidence 778888999999986 567899999988631 10 0 011111 112233333 566666777789999999
Q ss_pred HHHHHHHHhc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECC
Q 040099 530 QRVAIARAMI---------KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQG 597 (1236)
Q Consensus 530 qRiaiARal~---------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G 597 (1236)
||++|||||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||++++|++|
T Consensus 152 qrv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G 231 (272)
T PRK13547 152 ARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADG 231 (272)
T ss_pred HHHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 9999999999 59999999999999999999999999998754 789999999999986 59999999999
Q ss_pred EEEEEeCcccccc
Q 040099 598 KIVEKGTHSELLE 610 (1236)
Q Consensus 598 ~i~~~g~~~~l~~ 610 (1236)
++++.|+++++..
T Consensus 232 ~i~~~g~~~~~~~ 244 (272)
T PRK13547 232 AIVAHGAPADVLT 244 (272)
T ss_pred eEEEecCHHHHcC
Confidence 9999999988865
|
|
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-40 Score=358.41 Aligned_cols=197 Identities=33% Similarity=0.503 Sum_probs=170.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+.+ ++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++++
T Consensus 1 i~~~~l~~~~~~~---~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~~--~~~i~ 75 (213)
T cd03301 1 VELENVTKRFGNV---TALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPPK--DRDIA 75 (213)
T ss_pred CEEEeeEEEECCe---eeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCcc--cceEE
Confidence 4789999999753 589999999999999999999999999999999999999999999999999766543 56899
Q ss_pred EEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||++.+|. .|++||+..... +.+.+..+ |++........+||||||||++||||++++|++||
T Consensus 76 ~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qr~~laral~~~p~lll 153 (213)
T cd03301 76 MVFQNYALYPHMTVYDNIAFGLKLRKVPKDEIDERVREVAELL--QIEHLLDRKPKQLSGGQRQRVALGRAIVREPKVFL 153 (213)
T ss_pred EEecChhhccCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCHHHHhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999885 599999852211 11122222 55555667778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|||||++||+.+.+.+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|
T Consensus 154 lDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~g 213 (213)
T cd03301 154 MDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQIG 213 (213)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999875 37899999999999876 9999999999999876
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=367.01 Aligned_cols=228 Identities=28% Similarity=0.460 Sum_probs=188.5
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC------eecCCCCH
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG------VNLKEFQL 456 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g------~~~~~~~~ 456 (1236)
.-|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++| +++...+.
T Consensus 9 ~~i~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~ 85 (257)
T PRK14246 9 DVFNISRLYLYIND---KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDA 85 (257)
T ss_pred hheeeeeEEEecCC---ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCH
Confidence 35899999999963 4699999999999999999999999999999999999999997766665 56666666
Q ss_pred HHHhcceEEEccCCCCCch-hHHHHHhcCCC--CC-CHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 457 KWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HA-TKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~-~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
..+|++++|++|++.+|.+ |++||+.++.. .. .+++ +.++++..++++++ ....++.+..|||||
T Consensus 86 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-------~~~~~~~~~~LS~G~ 158 (257)
T PRK14246 86 IKLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEV-------YDRLNSPASQLSGGQ 158 (257)
T ss_pred HHHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccc-------hhhhcCCcccCCHHH
Confidence 7788999999999999875 99999997632 11 2222 33444444443222 123455677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|||++||||++.+|+++||||||++||+.++..+.+.|.++.+++|+|++||+++.+. .||++++|++|++++.|++++
T Consensus 159 ~qrl~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~ 238 (257)
T PRK14246 159 QQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNE 238 (257)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHH
Confidence 9999999999999999999999999999999999999998877799999999999985 599999999999999999999
Q ss_pred ccccccchhhhhH
Q 040099 608 LLENPYGAYNRLI 620 (1236)
Q Consensus 608 l~~~~~~~y~~~~ 620 (1236)
+..++...|.+.+
T Consensus 239 ~~~~~~~~~~~~~ 251 (257)
T PRK14246 239 IFTSPKNELTEKY 251 (257)
T ss_pred HHhCCCcHHHHHH
Confidence 9876544455443
|
|
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=365.20 Aligned_cols=218 Identities=26% Similarity=0.437 Sum_probs=184.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i--~~ 1082 (1236)
-|+++||+++|+++ .+|+|+||+|++||.+||+||||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 6 ~i~~~~l~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 82 (253)
T PRK14261 6 ILSTKNLNLWYGEK---HALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGADV 82 (253)
T ss_pred eEEEeeeEEEECCe---eeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccch
Confidence 48999999999743 589999999999999999999999999999999999763 489999999999876 45
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHHh------hhhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFISG------LQEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~~------lp~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
...|+.++|+||+|.+|+.|++||+.-.... ...+.. +.+++.+..+..+.+||||||||++|||
T Consensus 83 ~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~lar 162 (253)
T PRK14261 83 VALRRKIGMVFQRPNPFPKSIYENVAYGPRIHGEKNKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQQRLCIAR 162 (253)
T ss_pred hhhhceEEEEecCCccCcccHHHHHHhhHHhcCCCCHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHHHHHHHHH
Confidence 6778899999999999999999999621111 111111 1223344567788899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
|++.+|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...
T Consensus 163 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~ 242 (253)
T PRK14261 163 TLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFDKTTQIFENPHEE 242 (253)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcCCHHHHHhCCCcH
Confidence 999999999999999999999999999999988777899999999999965 9999999999999999999997654333
Q ss_pred cHHh
Q 040099 1227 YTSL 1230 (1236)
Q Consensus 1227 y~~L 1230 (1236)
+.+.
T Consensus 243 ~~~~ 246 (253)
T PRK14261 243 LTEN 246 (253)
T ss_pred HHHH
Confidence 4443
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=365.52 Aligned_cols=207 Identities=27% Similarity=0.450 Sum_probs=181.1
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l 1085 (1236)
...+.|+++|+++.. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||
T Consensus 35 ~~~~~l~i~nls~~~-----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g----------- 98 (282)
T cd03291 35 SDDNNLFFSNLCLVG-----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG----------- 98 (282)
T ss_pred CCCCeEEEEEEEEec-----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-----------
Confidence 344579999999952 2589999999999999999999999999999999999999999999998
Q ss_pred hcceEEEcCCCCCChhhHHHHHHH--------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIAE--------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~~--------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+++|+||++.+|++|++||+.- ..++.+.+..+|.++++.+++.+.+||||||||++|||||++
T Consensus 99 --~i~yv~q~~~l~~~tv~enl~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~lAraL~~ 176 (282)
T cd03291 99 --RISFSSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISLARAVYK 176 (282)
T ss_pred --EEEEEeCcccccccCHHHHhhcccccCHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHHHHHHhc
Confidence 3999999999999999999741 123345566678888888888899999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDAL-DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L 1230 (1236)
+|+||||||||++||+.+...+.+.+ +...+++|+|+|||+++.+..||+|++|++|++++.|+++++.+. ...|...
T Consensus 177 ~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 255 (282)
T cd03291 177 DADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQSL-RPDFSSK 255 (282)
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-chHHHHH
Confidence 99999999999999999999888754 555568899999999999988999999999999999999999864 3445443
Q ss_pred h
Q 040099 1231 I 1231 (1236)
Q Consensus 1231 ~ 1231 (1236)
+
T Consensus 256 ~ 256 (282)
T cd03291 256 L 256 (282)
T ss_pred H
Confidence 3
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-40 Score=374.07 Aligned_cols=206 Identities=22% Similarity=0.447 Sum_probs=183.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|++ ..+|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.++.. +...+|++++
T Consensus 3 l~~~~l~~~~~~---~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~-~~~~~~~~ig 78 (301)
T TIGR03522 3 IRVSSLTKLYGT---QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQ-NPKEVQRNIG 78 (301)
T ss_pred EEEEEEEEEECC---EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-ChHHHHhceE
Confidence 789999999963 359999999999999999999999999999999999999999999999999976 4467889999
Q ss_pred EEcCCCCCChh-hHHHHHHHHhhh------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMANA------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a~~------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||+|.+|.+ |++||+.-.+.. ...+..+ |++........+||||||||++|||||+.+|++||
T Consensus 79 ~~~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~qrv~la~al~~~p~lli 156 (301)
T TIGR03522 79 YLPEHNPLYLDMYVREYLQFIAGIYGMKGQLLKQRVEEMIELV--GLRPEQHKKIGQLSKGYRQRVGLAQALIHDPKVLI 156 (301)
T ss_pred EecCCCCCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCchhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999976 999999622211 1122222 66666677788999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+.+.+++.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 157 LDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 222 (301)
T TIGR03522 157 LDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADKKLDELSAA 222 (301)
T ss_pred EcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHHh
Confidence 99999999999999999999998778999999999999876 999999999999999999999764
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=370.10 Aligned_cols=210 Identities=31% Similarity=0.524 Sum_probs=183.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC---cEEEECCeecccCChHHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS---GHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~---G~I~idG~di~~i~~~~lR 1086 (1236)
.|+++|++++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++ |+|.+||.++...+...+|
T Consensus 5 ~l~i~~l~~~~~~~-~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~~~~~ 83 (282)
T PRK13640 5 IVEFKHVSFTYPDS-KKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTVWDIR 83 (282)
T ss_pred eEEEEEEEEEcCCC-CccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCHHHHH
Confidence 58999999999743 2358999999999999999999999999999999999999987 8999999999887777889
Q ss_pred cceEEEcCCC--CCChhhHHHHHHH---Hhh---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 QQMGVVSQEP--VLFSDTIRANIAE---MAN---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 ~~i~~V~Qdp--~LF~gTIreNL~~---~a~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++++||||+| .+++.|++|||.- ..+ +.+.++.+ |++........+||||||||++|||||+.+
T Consensus 84 ~~ig~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LS~G~~qrv~laral~~~ 161 (282)
T PRK13640 84 EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPEMIKIVRDVLADV--GMLDYIDSEPANLSGGQKQRVAIAGILAVE 161 (282)
T ss_pred hheEEEEECHHHhhccCCHHHHHHhhHHhCCCCHHHHHHHHHHHHHHC--CChhHhcCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999999998 4678899999951 111 11122221 555566777889999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+..||+|++|++|++++.|++++++..
T Consensus 162 P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 233 (282)
T PRK13640 162 PKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEANMADQVLVLDDGKLLAQGSPVEIFSK 233 (282)
T ss_pred CCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999998753 7899999999999988999999999999999999998764
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.2e-40 Score=366.09 Aligned_cols=216 Identities=29% Similarity=0.476 Sum_probs=182.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee-----cccCChHH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE-----IQKLQVKW 1084 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d-----i~~i~~~~ 1084 (1236)
-++++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.+ +.+.+...
T Consensus 6 ~l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~~ 82 (258)
T PRK11701 6 LLSVRGLTKLYGPR---KGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEAE 82 (258)
T ss_pred eEEEeeeEEEcCCc---eeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHHH
Confidence 48999999999753 58999999999999999999999999999999999999999999999998 87776544
Q ss_pred ----HhcceEEEcCCCC--CC-hhhHHHHHHHHh-------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHH
Q 040099 1085 ----LRQQMGVVSQEPV--LF-SDTIRANIAEMA-------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1085 ----lR~~i~~V~Qdp~--LF-~gTIreNL~~~a-------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRl 1143 (1236)
.|+.++||||++. ++ ..|+.+|+.... .+.++++.+ |++ +..+..+.+||||||||+
T Consensus 83 ~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~Gq~qrl 160 (258)
T PRK11701 83 RRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGARHYGDIRATAGDWLERV--EIDAARIDDLPTTFSGGMQQRL 160 (258)
T ss_pred HHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccCcHHHHHHHHHHHHHHc--CCChhHHhCCCccCCHHHHHHH
Confidence 3667999999984 33 347888875211 122334443 343 456788899999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+|||||+++|+||||||||++||+.+.+.+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|++++.|+++++.
T Consensus 161 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~ 240 (258)
T PRK11701 161 QIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESGLTDQVL 240 (258)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeCCHHHHh
Confidence 999999999999999999999999999999999988653 7899999999999975 9999999999999999999998
Q ss_pred hccCcccHHh
Q 040099 1221 STKNGIYTSL 1230 (1236)
Q Consensus 1221 ~~~~g~y~~L 1230 (1236)
.++...|.+.
T Consensus 241 ~~~~~~~~~~ 250 (258)
T PRK11701 241 DDPQHPYTQL 250 (258)
T ss_pred cCCCCHHHHH
Confidence 7644445443
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-39 Score=366.93 Aligned_cols=210 Identities=28% Similarity=0.455 Sum_probs=179.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
-|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 21 ~l~~~~l~~~~~~---~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 97 (268)
T PRK14248 21 ILEVKDLSIYYGE---KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNINV 97 (268)
T ss_pred eEEEEEEEEEeCC---ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccccH
Confidence 5899999999974 358999999999999999999999999999999999865 689999999999865 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh---------hchHHHhhh--hch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN---------ANGFISGLQ--EGY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~---------~~~~i~~lp--~Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||++.+|++|++||+.-... ..+.+...- -|+ .........+||||||||++|||
T Consensus 98 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrl~lar 177 (268)
T PRK14248 98 VNLRREIGMVFQKPNPFPKSIYNNITHALKYAGERRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQQQRLCIAR 177 (268)
T ss_pred HHHhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHHHHHHHHHH
Confidence 577899999999999999999999862111 011111110 022 23455677899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++..+
T Consensus 178 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 253 (268)
T PRK14248 178 TLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYDQTEQIFTS 253 (268)
T ss_pred HHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998777899999999998864 999999999999999999999875
|
|
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=360.20 Aligned_cols=199 Identities=32% Similarity=0.464 Sum_probs=170.4
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
|+++|++++|+... ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. +++++
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~-----~~~~i 75 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG-----PGPDR 75 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc-----ccCcE
Confidence 47899999997421 1369999999999999999999999999999999999999999999999998863 46789
Q ss_pred EEEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||+|.+|. .|++||+.-... +.++++.+ |++........+||||||||++|||||+++|++|
T Consensus 76 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~la~al~~~p~ll 153 (220)
T cd03293 76 GYVFQQDALLPWLTVLDNVALGLELQGVPKAEARERAEELLELV--GLSGFENAYPHQLSGGMRQRVALARALAVDPDVL 153 (220)
T ss_pred EEEecccccccCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhhhhCCcccCCHHHHHHHHHHHHHHcCCCEE
Confidence 99999999987 699999852111 11222222 4555566677899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEe--CCEEEEecCh
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVS--QGMIVEKGSH 1216 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~--~G~Ive~Gt~ 1216 (1236)
||||||++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|+ +|++++.++-
T Consensus 154 lLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 154 LLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred EECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 9999999999999999999999874 37899999999998865 99999999 7999998864
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-40 Score=366.89 Aligned_cols=208 Identities=25% Similarity=0.430 Sum_probs=181.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH-hcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-RQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l-R~~ 1088 (1236)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+ |..
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (255)
T PRK11300 5 LLSVSGLMMRFGG---LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPGHQIARMG 81 (255)
T ss_pred eEEEeeEEEEECC---EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCHHHHHhcC
Confidence 4899999999974 359999999999999999999999999999999999999999999999999988776554 456
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh----------h-----------------hchHHHhhhhchhhhhcCCCCCCChhHH
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA----------N-----------------ANGFISGLQEGYDTLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a----------~-----------------~~~~i~~lp~Gldt~vge~G~~LSGGQr 1140 (1236)
++|+||+|.+|.+ |++||+.... + +.++++.+ |++........+||||||
T Consensus 82 i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LS~G~~ 159 (255)
T PRK11300 82 VVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERV--GLLEHANRQAGNLAYGQQ 159 (255)
T ss_pred eEEeccCcccCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhC--ChhhhhhCChhhCCHHHH
Confidence 9999999999986 9999986211 0 11112222 566667788889999999
Q ss_pred HHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 040099 1141 QRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1141 QRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
||++||||++.+|++|||||||++||+.+...+.+.|.+..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++
T Consensus 160 qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~ 239 (255)
T PRK11300 160 RRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLANGTPE 239 (255)
T ss_pred HHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEecCCHH
Confidence 999999999999999999999999999999999999988753 6899999999999965 9999999999999999999
Q ss_pred HHhhc
Q 040099 1218 SLIST 1222 (1236)
Q Consensus 1218 eLl~~ 1222 (1236)
++...
T Consensus 240 ~~~~~ 244 (255)
T PRK11300 240 EIRNN 244 (255)
T ss_pred HHhhC
Confidence 98653
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-40 Score=368.96 Aligned_cols=211 Identities=27% Similarity=0.452 Sum_probs=181.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccCC-hH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKLQ-VK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i~-~~ 1083 (1236)
.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.+.+ ..
T Consensus 21 ~l~i~nl~~~~~~---~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 97 (276)
T PRK14271 21 AMAAVNLTLGFAG---KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRDVL 97 (276)
T ss_pred EEEEeeEEEEECC---EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccchhH
Confidence 5899999999974 3589999999999999999999999999999999999986 6999999999997763 45
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHHHHhhh------ch-------HHHh--hhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANA------NG-------FISG--LQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~------~~-------~i~~--lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
.+|++++|+||+|.+|+.|++||+...... .+ .+.. ++..+++.+...+.+||||||||++||||
T Consensus 98 ~~~~~i~~v~q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~qrl~LAra 177 (276)
T PRK14271 98 EFRRRVGMLFQRPNPFPMSIMDNVLAGVRAHKLVPRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQQLLCLART 177 (276)
T ss_pred HHhhheEEeccCCccCCccHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHHHHHHHHHH
Confidence 778999999999999999999999621110 11 1111 11122244567788999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|+++|++|||||||++||+.+.+.+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 178 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g~~~~~~~~~ 253 (276)
T PRK14271 178 LAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEGPTEQLFSSP 253 (276)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCc
Confidence 99999999999999999999999999999988767899999999999865 9999999999999999999998753
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-40 Score=366.78 Aligned_cols=219 Identities=32% Similarity=0.484 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--C---CCcEEEECCeecCC--CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--P---QAGEVLIDGVNLKE--FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~---~~G~i~~~g~~~~~--~~~ 456 (1236)
-|+++||+++|+. +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999963 469999999999999999999999999999999999975 5 59999999998864 334
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCC--CC-CH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HA-TK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~-~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..+++.++|++|++.+|+.|++||+.++.. .. .. +++.++++.+++.+ ++.........+||||||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWD-------EVKDHLHESALSLSGGQQ 154 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCcc-------chhhHHhcCcccCCHHHH
Confidence 566788999999999998999999987521 11 11 22333444444322 222345566779999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
||++|||||+.+|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+..++
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~ 234 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQM 234 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999999998767899999999999865 999999999999999998888
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
..++
T Consensus 235 ~~~~ 238 (252)
T PRK14255 235 FLNP 238 (252)
T ss_pred hcCC
Confidence 7653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-40 Score=368.33 Aligned_cols=207 Identities=29% Similarity=0.434 Sum_probs=180.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++.+.+...+|+.+
T Consensus 11 ~l~i~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i 87 (265)
T PRK10575 11 TFALRNVSFRVPG---RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSSKAFARKV 87 (265)
T ss_pred eEEEeeEEEEECC---EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCHHHHhhhe
Confidence 5899999999974 3589999999999999999999999999999999999999999999999999888888899999
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh----------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA----------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a----------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
+|+||++.+|.+ |++||+.... .+.+.+..+ |++........+||||||||++|||||+.+
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~ 165 (265)
T PRK10575 88 AYLPQQLPAAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLV--GLKPLAHRLVDSLSGGERQRAWIAMLVAQD 165 (265)
T ss_pred EEeccCCCCCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHc--CCHHHhcCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999877655 9999996211 011111111 444445566678999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|+||||||||++||+.+.+.+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|++++.|+++++..
T Consensus 166 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~~~~~~~~ 237 (265)
T PRK10575 166 SRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQGTPAELMR 237 (265)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEecCHHHhcC
Confidence 999999999999999999999999998742 789999999999996 499999999999999999999865
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-40 Score=370.08 Aligned_cols=213 Identities=25% Similarity=0.416 Sum_probs=182.4
Q ss_pred cEEEeEEEEECCCCC---CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC-hHHH
Q 040099 1010 EVQFLRVSFKYPTRP---HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-VKWL 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~---~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-~~~l 1085 (1236)
-++++|++++|++.. .+++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.++.+.+ ...+
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~~~~~ 83 (280)
T PRK13633 4 MIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEENLWDI 83 (280)
T ss_pred eEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeccccccHHHH
Confidence 488999999997431 246999999999999999999999999999999999999999999999999997654 4567
Q ss_pred hcceEEEcCCCC--CChhhHHHHHHHHh---h-----hchHHHhh-h-hchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1086 RQQMGVVSQEPV--LFSDTIRANIAEMA---N-----ANGFISGL-Q-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1086 R~~i~~V~Qdp~--LF~gTIreNL~~~a---~-----~~~~i~~l-p-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|++++||||+|. +|..|+.+|+.-.. + ..+.+..+ . -|+.........+||||||||++|||||+++|
T Consensus 84 ~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~~~~~~~~~~~~~~~l~~~gL~~~~~~~~~~LS~G~~qrv~laral~~~p 163 (280)
T PRK13633 84 RNKAGMVFQNPDNQIVATIVEEDVAFGPENLGIPPEEIRERVDESLKKVGMYEYRRHAPHLLSGGQKQRVAIAGILAMRP 163 (280)
T ss_pred hhheEEEecChhhhhccccHHHHHHhhHhhcCCCHHHHHHHHHHHHHHCCCHhHhhCCcccCCHHHHHHHHHHHHHHcCC
Confidence 899999999984 67778999985211 1 11112211 1 15666666777899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||++++|++|++++.|+++++.++
T Consensus 164 ~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 234 (280)
T PRK13633 164 ECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVEADRIIVMDSGKVVMEGTPKEIFKE 234 (280)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhcCCEEEEEECCEEEEecCHHHHhcC
Confidence 9999999999999999999999999875 37899999999999988999999999999999999999764
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-40 Score=360.96 Aligned_cols=203 Identities=27% Similarity=0.423 Sum_probs=178.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||++.|+.+ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+|+++
T Consensus 7 ~i~~~~l~~~~~~~---~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (225)
T PRK10247 7 LLQLQNVGYLAGDA---KILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKPEIYRQQV 83 (225)
T ss_pred eEEEeccEEeeCCc---eeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCHHHHHhcc
Confidence 48999999999743 589999999999999999999999999999999999999999999999999988888889999
Q ss_pred EEEcCCCCCChhhHHHHHHHHh----------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSDTIRANIAEMA----------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~~a----------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+|++|++.+|+.|++||+.-.. .+.++++.+ |+. +.......+||||||||++|||||+++|++|||
T Consensus 84 ~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~laral~~~p~llll 161 (225)
T PRK10247 84 SYCAQTPTLFGDTVYDNLIFPWQIRNQQPDPAIFLDDLERF--ALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLL 161 (225)
T ss_pred EEEecccccccccHHHHHHhHHhhcCCChHHHHHHHHHHHc--CCChHHhcCCcccCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 9999999999999999985211 112233332 453 456778889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEe-CCEEEEecChh
Q 040099 1159 DEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVS-QGMIVEKGSHE 1217 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~-~G~Ive~Gt~~ 1217 (1236)
||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|+ ++..+++|+|+
T Consensus 162 DEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~~~d~i~~l~~~~~~~~~~~~~ 223 (225)
T PRK10247 162 DEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEINHADKVITLQPHAGEMQEARYE 223 (225)
T ss_pred eCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHHhCCEEEEEecccchHhhhhhc
Confidence 999999999999999999998753 789999999999998899999995 66667889885
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-39 Score=364.61 Aligned_cols=213 Identities=27% Similarity=0.471 Sum_probs=180.3
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--C---CCcEEEECCeecccC--C
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--P---SSGHITLDGVEIQKL--Q 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~---~~G~I~idG~di~~i--~ 1081 (1236)
|.|+++|++++|+++ ++|+|+||+|++||.+||+|+||||||||+++|.|+++ | ++|+|++||.++... +
T Consensus 3 ~~l~~~nl~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~ 79 (252)
T PRK14256 3 NKVKLEQLNVHFGKN---HAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD 79 (252)
T ss_pred cEEEEEEEEEEeCCe---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC
Confidence 569999999999743 58999999999999999999999999999999999986 4 689999999998643 4
Q ss_pred hHHHhcceEEEcCCCCCCh-hhHHHHHHHHh---h------hchHHHhhh--hch----hhhhcCCCCCCChhHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFS-DTIRANIAEMA---N------ANGFISGLQ--EGY----DTLVGERGVQLSGGQKQRVAI 1145 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a---~------~~~~i~~lp--~Gl----dt~vge~G~~LSGGQrQRlaL 1145 (1236)
...+|++++|+||++.+|. .|++||+.... + ..+.+..+- -|+ +...+..+.+||||||||++|
T Consensus 80 ~~~~~~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrl~l 159 (252)
T PRK14256 80 PVSIRRRVGMVFQKPNPFPAMSIYDNVIAGYKLNGRVNRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQRLCI 159 (252)
T ss_pred hHHhhccEEEEecCCCCCCcCcHHHHHHhHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHHHHH
Confidence 5578899999999999998 59999995211 1 001111110 122 234456678999999999999
Q ss_pred HHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1146 ARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
|||++++|++|||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|+|++.|+++++...+.
T Consensus 160 aral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14256 160 ARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECGETKKIFTTPE 239 (252)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeCCHHHHHhCCC
Confidence 99999999999999999999999999999999998777899999999999855 99999999999999999999986533
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-40 Score=357.47 Aligned_cols=195 Identities=35% Similarity=0.583 Sum_probs=169.2
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+|++++|
T Consensus 1 ~~~~l~~~~~~~-~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~~ 79 (211)
T cd03225 1 ELKNLSFSYPDG-ARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSLKELRRKVGL 79 (211)
T ss_pred CceeEEEecCCC-CeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCHHHHHhhceE
Confidence 368999999752 1358999999999999999999999999999999999999999999999999988888888999999
Q ss_pred EcCCC--CCChhhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1092 VSQEP--VLFSDTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1092 V~Qdp--~LF~gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
+||+| .++..|++||+..... +.++++.+ |++.........||||||||++|||||+++|++||
T Consensus 80 ~~q~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~laral~~~p~lll 157 (211)
T cd03225 80 VFQNPDDQFFGPTVEEEVAFGLENLGLPEEEIEERVEEALELV--GLEGLRDRSPFTLSGGQKQRVAIAGVLAMDPDILL 157 (211)
T ss_pred EecChhhhcCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99998 3678899999852111 11122221 55555667778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhh-cCEEEEEeCCE
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~-aD~I~Vl~~G~ 1209 (1236)
|||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|+
T Consensus 158 lDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 158 LDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 9999999999999999999988754 7899999999999987 99999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-40 Score=347.14 Aligned_cols=221 Identities=29% Similarity=0.497 Sum_probs=190.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcce
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~i 463 (1236)
+++++++++|. +-.+++||||++++||+++|+|||||||||++|+|+|+|+|++|+|.++|+||...++... |..|
T Consensus 5 L~v~~l~k~FG---Gl~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~~iar~Gi 81 (250)
T COG0411 5 LEVRGLSKRFG---GLTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPHRIARLGI 81 (250)
T ss_pred eeeccceeecC---CEEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHHHHHhccc
Confidence 67999999996 3569999999999999999999999999999999999999999999999999999997765 5569
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCC-----------CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHA-----------TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~-----------~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
+--+|.+.+|++ ||.||+..+.... ...+..++.+. +.+.++.+ |++...++...+||+|||.|
T Consensus 82 ~RTFQ~~rlF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~--A~~~Le~v--gL~~~a~~~A~~LsyG~qR~ 157 (250)
T COG0411 82 ARTFQITRLFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARER--ARELLEFV--GLGELADRPAGNLSYGQQRR 157 (250)
T ss_pred eeecccccccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHH--HHHHHHHc--CCchhhcchhhcCChhHhHH
Confidence 999999999976 9999999873211 11112222222 22344444 78778888888999999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
+.|||||+.+|++|+||||.++|.+.....+.+.|+++++ |.|+++|.||++.+.. ||||+||+.|+++.+|+++|+
T Consensus 158 LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P~eV 237 (250)
T COG0411 158 LEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTPEEV 237 (250)
T ss_pred HHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCHHHH
Confidence 9999999999999999999999999999999999999975 4899999999999876 999999999999999999999
Q ss_pred cccc
Q 040099 609 LENP 612 (1236)
Q Consensus 609 ~~~~ 612 (1236)
.++|
T Consensus 238 ~~dp 241 (250)
T COG0411 238 RNNP 241 (250)
T ss_pred hcCH
Confidence 8764
|
|
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=364.36 Aligned_cols=215 Identities=28% Similarity=0.419 Sum_probs=180.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-----CcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-----~G~I~idG~di~~--i~~ 1082 (1236)
-++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~~ 80 (252)
T PRK14272 4 LLSAQDVNIYYGD---KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDP 80 (252)
T ss_pred EEEEeeeEEEECC---EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCccCH
Confidence 3789999999974 35899999999999999999999999999999999999874 8999999999875 345
Q ss_pred HHHhcceEEEcCCCCCChh-hHHHHHHHHhhh---------chHHHhh------hhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSD-TIRANIAEMANA---------NGFISGL------QEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a~~---------~~~i~~l------p~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
..+|+.++|+||+|.+|.. |++||+...... .+....+ ..++.........+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 160 (252)
T PRK14272 81 VAMRRRVGMVFQKPNPFPTMSVFDNVVAGLKLAGIRDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQRLCIA 160 (252)
T ss_pred HHhhceeEEEeccCccCcCCCHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHHHHHH
Confidence 6788999999999999985 999999521110 1111111 11122333455678999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
|||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|++++++.++..
T Consensus 161 ral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~ 240 (252)
T PRK14272 161 RALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHGPTDQLFTNPRD 240 (252)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcCc
Confidence 9999999999999999999999999999999988777999999999999986 999999999999999999999876444
Q ss_pred cc
Q 040099 1226 IY 1227 (1236)
Q Consensus 1226 ~y 1227 (1236)
.|
T Consensus 241 ~~ 242 (252)
T PRK14272 241 ER 242 (252)
T ss_pred HH
Confidence 34
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=363.28 Aligned_cols=210 Identities=30% Similarity=0.488 Sum_probs=180.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-----CcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-----~G~I~idG~di~~--i~~ 1082 (1236)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++.. .+.
T Consensus 4 ~l~~~~l~~~~~~~---~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 80 (251)
T PRK14249 4 KIKIRGVNFFYHKH---QVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNLDV 80 (251)
T ss_pred eEEEEEEEEEECCe---eEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEccccccCh
Confidence 58999999999743 5899999999999999999999999999999999999987 6999999999864 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHH------hhhhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFIS------GLQEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~------~lp~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|+.++||||+|.+|+.|++||+.-.... .+.+. .+.+.+.......+.+||||||||++|||
T Consensus 81 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 160 (251)
T PRK14249 81 VNLRKRVGMVFQQPNPFPKSIFDNVAFGPRMLGTTAQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQRLCIAR 160 (251)
T ss_pred HHhhceEEEEecCCccCcCcHHHHHhhHHHhcCCChhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 6789999999999999999999999621110 01111 11112234456778899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 161 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14249 161 VLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYGRTGEIFSR 236 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeCCHHHHHhC
Confidence 999999999999999999999999999999987667899999999999976 899999999999999999999765
|
|
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=367.83 Aligned_cols=207 Identities=27% Similarity=0.392 Sum_probs=176.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~~ 1088 (1236)
++++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. +.+...+|++
T Consensus 2 l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (271)
T PRK13638 2 LATSDLWFRYQD---EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKRGLLALRQQ 78 (271)
T ss_pred eEEEEEEEEcCC---cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccCCHHHHHhh
Confidence 689999999974 35899999999999999999999999999999999999999999999999985 3345678899
Q ss_pred eEEEcCCCC--CChhhHHHHHHHHhhh------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPV--LFSDTIRANIAEMANA------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~--LF~gTIreNL~~~a~~------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++||||+|. +|..|+.+|+...... .+.++.+ |++........+||||||||++|||||+.+|+
T Consensus 79 i~~v~q~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrl~laraL~~~p~ 156 (271)
T PRK13638 79 VATVFQDPEQQIFYTDIDSDIAFSLRNLGVPEAEITRRVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALVLQAR 156 (271)
T ss_pred eEEEeeChhhccccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHhHhcCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 999999985 6778999998521111 1111111 34334455677899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|++++++..
T Consensus 157 lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 226 (271)
T PRK13638 157 YLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHGAPGEVFAC 226 (271)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999875 47899999999999965 999999999999999999998764
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=355.83 Aligned_cols=193 Identities=32% Similarity=0.519 Sum_probs=165.5
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++||+++|++. .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.. ...|++++|
T Consensus 1 ~~~~l~~~~~~~--~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~---~~~~~~i~~ 75 (205)
T cd03226 1 RIENISFSYKKG--TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA---KERRKSIGY 75 (205)
T ss_pred CcccEEEEeCCc--CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh---HHhhcceEE
Confidence 367999999741 358999999999999999999999999999999999999999999999998864 456789999
Q ss_pred EcCCC--CCChhhHHHHHHHHh--------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1092 VSQEP--VLFSDTIRANIAEMA--------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1092 V~Qdp--~LF~gTIreNL~~~a--------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
+||+| .+|..|++||+.... .+.++++.+ |++.........||||||||++|||||+++|++||||||
T Consensus 76 ~~q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~llllDEP 153 (205)
T cd03226 76 VMQDVDYQLFTDSVREELLLGLKELDAGNEQAETVLKDL--DLYALKERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEP 153 (205)
T ss_pred EecChhhhhhhccHHHHHhhhhhhcCccHHHHHHHHHHc--CCchhcCCCchhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99998 467889999995211 122223322 444445566678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEE
Q 040099 1162 TSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIV 1211 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv 1211 (1236)
|++||+++.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|+++
T Consensus 154 t~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 154 TSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999873 57899999999999975 9999999999985
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-40 Score=360.84 Aligned_cols=210 Identities=29% Similarity=0.525 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. .++.++
T Consensus 1 l~~~~l~~~~~~----~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~~--~~~~i~ 74 (235)
T cd03299 1 LKVENLSKDWKE----FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLPP--EKRDIS 74 (235)
T ss_pred CeeEeEEEEeCC----ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCCh--hHcCEE
Confidence 478999999962 38999999999999999999999999999999999999999999999999876554 367899
Q ss_pred EEccCCCCCc-hhHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|. .|+.||+.++... .+ .+++.++++..++.+++. ....+||||||||++||||
T Consensus 75 ~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LS~G~~qrl~lara 143 (235)
T cd03299 75 YVPQNYALFPHMTVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDHLLN-----------RKPETLSGGEQQRVAIARA 143 (235)
T ss_pred EEeecCccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhHHh-----------cCcccCCHHHHHHHHHHHH
Confidence 9999999885 6999999875321 11 223445555555554443 3445899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
++++|++++|||||++||+.+.+.+.+.|+++.. ++|+|++||++..+.. ||+|++|++|++++.|+++++.+.
T Consensus 144 l~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 220 (235)
T cd03299 144 LVVNPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVGKPEEVFKK 220 (235)
T ss_pred HHcCCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHHhC
Confidence 9999999999999999999999999999998753 7899999999999875 999999999999999999888764
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.5e-40 Score=365.01 Aligned_cols=214 Identities=29% Similarity=0.467 Sum_probs=181.0
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeecccCC--hH
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKLQ--VK 1083 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~i~--~~ 1083 (1236)
-+++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|+++|.++.+.+ ..
T Consensus 6 ~~~~~l~~~~~~---~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~~ 82 (251)
T PRK14244 6 ASVKNLNLWYGS---KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTNVV 82 (251)
T ss_pred EEeeeEEEEECC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccchH
Confidence 468999999974 358999999999999999999999999999999999986 47999999999987653 34
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHHHHhhh----------chHHHhh-h-hchh----hhhcCCCCCCChhHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANA----------NGFISGL-Q-EGYD----TLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~----------~~~i~~l-p-~Gld----t~vge~G~~LSGGQrQRlaLAR 1147 (1236)
.+|++++||||++.+|.+|++||+...... .+.+..+ . -|++ +.++..+.+||||||||++|||
T Consensus 83 ~~~~~i~~v~q~~~~~~~tv~~ni~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qrv~lar 162 (251)
T PRK14244 83 LLRAKVGMVFQKPNPFPKSIYDNVAYGPKLHGLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQRLCIAR 162 (251)
T ss_pred HHhhhEEEEecCcccccCCHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHHHHHHH
Confidence 678999999999999999999998522111 1111111 1 1332 3455677899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+...
T Consensus 163 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~~~ 242 (251)
T PRK14244 163 AIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYNTTQEIFKNPQSS 242 (251)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeCCHHHHhcCCCCh
Confidence 999999999999999999999999999999988778999999999999865 9999999999999999999998765444
Q ss_pred c
Q 040099 1227 Y 1227 (1236)
Q Consensus 1227 y 1227 (1236)
|
T Consensus 243 ~ 243 (251)
T PRK14244 243 K 243 (251)
T ss_pred H
Confidence 4
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-40 Score=377.20 Aligned_cols=200 Identities=25% Similarity=0.432 Sum_probs=171.2
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIR 478 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 478 (1236)
+++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.. ....+|++|||++|++.++.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 469999999999999999999999999999999999999999999999999875 345678899999999999875 999
Q ss_pred HHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC
Q 040099 479 DNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552 (1236)
Q Consensus 479 ~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts 552 (1236)
||+.+... ..+. +++.++++..+ ++........+||||||||++|||||+++|++|||||||+
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~ 153 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELFE-----------LGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTT 153 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHcC-----------ChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCc
Confidence 99987421 1122 22334444443 3333445556899999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 553 ALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 553 ~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+||+.+.+.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 154 gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 154 GLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred CCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999999999999885 47899999999999875 999999999999999999988654
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-40 Score=379.42 Aligned_cols=201 Identities=27% Similarity=0.389 Sum_probs=171.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe----ecccCChHHHh----cceEEEcCCCCC
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV----EIQKLQVKWLR----QQMGVVSQEPVL 1098 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~----di~~i~~~~lR----~~i~~V~Qdp~L 1098 (1236)
.+|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|++||. |+...+...+| ++|+||+|++.+
T Consensus 38 ~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~l 117 (382)
T TIGR03415 38 VGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFAL 117 (382)
T ss_pred EEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCcC
Confidence 5899999999999999999999999999999999999999999999996 67777665543 589999999999
Q ss_pred Ch-hhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040099 1099 FS-DTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165 (1236)
Q Consensus 1099 F~-gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaL 1165 (1236)
|+ .|++||+.-.. .+.++++.+ |++........+||||||||++|||||+++|+|||||||||+|
T Consensus 118 ~p~~Tv~eNi~~~~~~~g~~~~~~~~~a~e~le~v--gL~~~~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEPts~L 195 (382)
T TIGR03415 118 MPWLTVEENVAFGLEMQGMPEAERRKRVDEQLELV--GLAQWADKKPGELSGGMQQRVGLARAFAMDADILLMDEPFSAL 195 (382)
T ss_pred CCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCccC
Confidence 97 69999996211 111222222 5554555667789999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1166 DIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1166 D~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|+.+...+++.|.++.+ ++|+|+|||+++.+. .||+|++|++|++++.|++++++.++...|.+
T Consensus 196 D~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g~~~ei~~~p~~~~~~ 262 (382)
T TIGR03415 196 DPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHGTPEEIVLNPANDYVA 262 (382)
T ss_pred CHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEecCHHHHhhCcchHHHH
Confidence 99999999999988754 789999999999985 59999999999999999999998765555543
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=359.92 Aligned_cols=202 Identities=38% Similarity=0.563 Sum_probs=171.9
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh---HHHh
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV---KWLR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~---~~lR 1086 (1236)
|+++||+++|+.+. ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+. ..+|
T Consensus 2 l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (228)
T cd03257 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRRLRKIRR 81 (228)
T ss_pred eEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchhhHHHhh
Confidence 68999999997431 1258999999999999999999999999999999999999999999999999988763 5778
Q ss_pred cceEEEcCCC--CCC-hhhHHHHHHHHhhh--------------chHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHH
Q 040099 1087 QQMGVVSQEP--VLF-SDTIRANIAEMANA--------------NGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1087 ~~i~~V~Qdp--~LF-~gTIreNL~~~a~~--------------~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARA 1148 (1236)
++++|+||+| .++ ..|++||+...... .+++..+ |++ ........+||||||||++||||
T Consensus 82 ~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~lara 159 (228)
T cd03257 82 KEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLSKKEARKEAVLLLLVGV--GLPEEVLNRYPHELSGGQRQRVAIARA 159 (228)
T ss_pred ccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHC--CCChhHhhCCchhcCHHHHHHHHHHHH
Confidence 8999999999 344 57999998521100 0112221 443 45567778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEec
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~G 1214 (1236)
|+.+|+||||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|
T Consensus 160 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 228 (228)
T cd03257 160 LALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEEG 228 (228)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEecC
Confidence 9999999999999999999999999999998764 789999999999997 59999999999998865
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.1e-40 Score=365.50 Aligned_cols=216 Identities=26% Similarity=0.465 Sum_probs=184.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|.|+++|++|+|.++|.++..++...+++.++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (255)
T PRK11231 3 LRTENLTVGYGT---KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSSRQLARRLA 79 (255)
T ss_pred EEEEeEEEEECC---EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCHHHHhhheE
Confidence 789999999974 35999999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCCChh-hHHHHHHHHh-------h-----hchHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA-------N-----ANGFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a-------~-----~~~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||++.+|.+ |++||+.-.. + ..+.+.. +. -|++.........||||||||++||||++++|++
T Consensus 80 ~~~q~~~~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~G~~qrv~laral~~~p~l 159 (255)
T PRK11231 80 LLPQHHLTPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHLADRRLTDLSGGQRQRAFLAMVLAQDTPV 159 (255)
T ss_pred EecccCCCCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHHHcCCcccCCHHHHHHHHHHHHHhcCCCE
Confidence 99999998876 9999985210 0 0011111 11 1555556677889999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
|||||||++||+++...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++... ..+.+.+
T Consensus 160 lllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~--~~~~~~~ 235 (255)
T PRK11231 160 VLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQGTPEEVMTP--GLLRTVF 235 (255)
T ss_pred EEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEcCHHHhcCH--HHHHHHh
Confidence 99999999999999999999998865 47899999999999865 999999999999999999998753 3344443
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-40 Score=361.25 Aligned_cols=214 Identities=28% Similarity=0.447 Sum_probs=172.1
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCeecCCCCHHHHh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD---PQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
++|+||+|+|++.+ .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++. ...+|
T Consensus 4 ~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~---~~~~~ 80 (226)
T cd03234 4 LPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRK---PDQFQ 80 (226)
T ss_pred ceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECC---hHHhc
Confidence 67999999997532 3679999999999999999999999999999999999999 99999999999875 34567
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
++++|++|++.+|+. |++||+.++..........+.......++ .+..+ +++.........||||||||++|||||
T Consensus 81 ~~i~~~~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~laral 158 (226)
T cd03234 81 KCVAYVRQDDILLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDL--ALTRIGGNLVKGISGGERRRVSIAVQL 158 (226)
T ss_pred ccEEEeCCCCccCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhh--cchhhhcccccCcCHHHHHHHHHHHHH
Confidence 889999999999987 99999987532110000000000001111 22222 444445556679999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCc-hhH-hhcCeEEEEECCEEEEEe
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRL-SLI-RNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~-~~~-~~ad~i~vl~~G~i~~~g 603 (1236)
+++|++|||||||++||+.+...+.+.|+++. +++|+|++||++ ..+ +.||++++|++|+++++|
T Consensus 159 ~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~g 226 (226)
T cd03234 159 LWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYSG 226 (226)
T ss_pred HhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEecC
Confidence 99999999999999999999999999998875 478999999998 455 559999999999999865
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-40 Score=356.33 Aligned_cols=195 Identities=22% Similarity=0.466 Sum_probs=169.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ..|++++
T Consensus 1 l~~~~l~~~~~~---~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~----~~~~~i~ 73 (210)
T cd03269 1 LEVENVTKRFGR---VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI----AARNRIG 73 (210)
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH----HHHccEE
Confidence 478999999974 358999999999999999999999999999999999999999999999998753 5678999
Q ss_pred EEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||++.+|.+ |++||+.-... +.++++.+ |++........+||||||||++||||++.+|++||
T Consensus 74 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~~ll 151 (210)
T cd03269 74 YLPEERGLYPKMKVIDQLVYLAQLKGLKKEEARRRIDEWLERL--ELSEYANKRVEELSKGNQQKVQFIAAVIHDPELLI 151 (210)
T ss_pred EeccCCcCCcCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHc--CChHHHhCcHhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999875 99999852211 12233332 55556667778999999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1158 LDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|||||++||+.+.+.+.+.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|
T Consensus 152 lDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 210 (210)
T cd03269 152 LDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLYG 210 (210)
T ss_pred EeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEecC
Confidence 999999999999999999998864 46899999999999865 9999999999998865
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=360.40 Aligned_cols=205 Identities=33% Similarity=0.507 Sum_probs=177.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+.+ ++|+|+||+|.+||++||+||||||||||+++|.|+++|++|+|.+||.++...+. .|+.++
T Consensus 1 i~i~~l~~~~~~~---~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~~--~~~~i~ 75 (237)
T TIGR00968 1 IEIANISKRFGSF---QALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVHA--RDRKIG 75 (237)
T ss_pred CEEEEEEEEECCe---eeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcCEE
Confidence 4789999999743 59999999999999999999999999999999999999999999999999986653 478899
Q ss_pred EEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+||+|.+|++ |++||+.... .+.+.++.+ |+.........+|||||+||++||||++++|+++|
T Consensus 76 ~~~q~~~~~~~~t~~enl~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~lS~G~~qrl~laral~~~p~lll 153 (237)
T TIGR00968 76 FVFQHYALFKHLTVRDNIAFGLEIRKHPKAKIKARVEELLELV--QLEGLGDRYPNQLSGGQRQRVALARALAVEPQVLL 153 (237)
T ss_pred EEecChhhccCCcHHHHHHhHHHhcCCCHHHHHHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999976 9999995211 112223332 33334455667899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 154 lDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~~~~~ 221 (237)
T TIGR00968 154 LDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIGSPDEVYDH 221 (237)
T ss_pred EcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEecCHHHHHcC
Confidence 9999999999999999999998654 6899999999999865 999999999999999999999764
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=363.65 Aligned_cols=203 Identities=29% Similarity=0.467 Sum_probs=171.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... +..++
T Consensus 2 l~~~~l~~~~~~---~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~-----~~~~~ 73 (255)
T PRK11248 2 LQISHLYADYGG---KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP-----GAERG 73 (255)
T ss_pred EEEEEEEEEeCC---eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC-----CCcEE
Confidence 689999999963 4699999999999999999999999999999999999999999999999988642 24699
Q ss_pred EEccCCCCCc-hhHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
|++|++.+|+ .|++||+.++.. .... +++.++++.. |++......+.+||||||||++||||
T Consensus 74 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq~qrl~lara 142 (255)
T PRK11248 74 VVFQNEGLLPWRNVQDNVAFGLQLAGVEKMQRLEIAHQMLKKV-----------GLEGAEKRYIWQLSGGQRQRVGIARA 142 (255)
T ss_pred EEeCCCccCCCCcHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CChhHhhCChhhCCHHHHHHHHHHHH
Confidence 9999999887 599999987531 1122 2233344444 44434445567899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEE--CCEEEEEeCcc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQ--QGKIVEKGTHS 606 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~--~G~i~~~g~~~ 606 (1236)
|+.+|++|||||||++||+.+...+.+.|+++. .++|+|++||+++.+.. ||+|++|+ +|+++++++.+
T Consensus 143 l~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~~~~ 216 (255)
T PRK11248 143 LAANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERLPLN 216 (255)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEecCC
Confidence 999999999999999999999999999999873 37899999999999865 99999998 59999988653
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=371.68 Aligned_cols=219 Identities=29% Similarity=0.539 Sum_probs=185.6
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-----CCCcEEEECCeecCCC--C
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-----PQAGEVLIDGVNLKEF--Q 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-----~~~G~i~~~g~~~~~~--~ 455 (1236)
..|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++... +
T Consensus 44 ~~l~i~nl~~~~~~---~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~ 120 (305)
T PRK14264 44 AKLSVEDLDVYYGD---DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120 (305)
T ss_pred ceEEEEEEEEEeCC---eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEccccccc
Confidence 35899999999963 469999999999999999999999999999999999986 6899999999998643 3
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCCC-------------------CHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA-------------------TKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~-------------------~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
...+|++|+||+|++.+|+.|++||+.++.... .++++.++++.+++ ++++++.
T Consensus 121 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-------~~~~~~~ 193 (305)
T PRK14264 121 LVELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAAL-------WDEVNDR 193 (305)
T ss_pred HHHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCC-------chhhhHH
Confidence 556788999999999999999999999763210 01223334443333 2334455
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeE-EEE
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANII-AVI 594 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i-~vl 594 (1236)
.+..+.+||||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||++ ++|
T Consensus 194 ~~~~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l 273 (305)
T PRK14264 194 LDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFL 273 (305)
T ss_pred hcCccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEe
Confidence 67778899999999999999999999999999999999999999999999998777899999999999865 9997 578
Q ss_pred ECCEEEEEeCccccccc
Q 040099 595 QQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 595 ~~G~i~~~g~~~~l~~~ 611 (1236)
++|++++.|+++++...
T Consensus 274 ~~G~i~~~g~~~~~~~~ 290 (305)
T PRK14264 274 TGGELVEYDDTDKIFEN 290 (305)
T ss_pred cCCEEEEeCCHHHHHhC
Confidence 99999999999888654
|
|
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-39 Score=365.04 Aligned_cols=211 Identities=28% Similarity=0.466 Sum_probs=179.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeecc--cCCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQ--KLQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~--~i~~ 1082 (1236)
-|+++||+++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++. ..+.
T Consensus 10 ~l~i~~v~~~~~~~---~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~~ 86 (264)
T PRK14243 10 VLRTENLNVYYGSF---LAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVDP 86 (264)
T ss_pred EEEEeeeEEEECCE---EEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccCh
Confidence 48999999999743 58999999999999999999999999999999999986 37999999999985 3456
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhh-------chHH----Hh--hhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANA-------NGFI----SG--LQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~-------~~~i----~~--lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
..+|++++|++|++.+|+.|++||+...... .+.+ .. +.++++......+.+||||||||++|||||
T Consensus 87 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~laral 166 (264)
T PRK14243 87 VEVRRRIGMVFQKPNPFPKSIYDNIAYGARINGYKGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQQRLCIARAI 166 (264)
T ss_pred HHHhhhEEEEccCCccccccHHHHHHhhhhhcCcchHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHHHHHHHHHHH
Confidence 6788999999999999989999999521111 0111 11 111223345667789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEe---------CCEEEEecChhHH
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVS---------QGMIVEKGSHESL 1219 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~---------~G~Ive~Gt~~eL 1219 (1236)
+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. ||+|++|+ +|+|++.|+++++
T Consensus 167 ~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i~~~~~~~~~ 246 (264)
T PRK14243 167 AVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYLVEFDRTEKI 246 (264)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceEEEeCCHHHH
Confidence 9999999999999999999999999999998777899999999999865 99999998 8999999999999
Q ss_pred hhcc
Q 040099 1220 ISTK 1223 (1236)
Q Consensus 1220 l~~~ 1223 (1236)
.+.+
T Consensus 247 ~~~~ 250 (264)
T PRK14243 247 FNSP 250 (264)
T ss_pred HhCC
Confidence 8753
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-40 Score=356.00 Aligned_cols=196 Identities=31% Similarity=0.521 Sum_probs=168.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh---HHHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV---KWLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~---~~lR~ 1087 (1236)
++++|++++|+++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|+
T Consensus 1 l~~~~l~~~~~~~--~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG--TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRAIPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHHH
Confidence 4689999999743 358999999999999999999999999999999999999999999999999987654 35788
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
.++||||+|.+|.. |++||+..... +.+.++.+ |++........+||||||||++|||||+++|+
T Consensus 79 ~i~~v~q~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 156 (214)
T cd03292 79 KIGVVFQDFRLLPDRNVYENVAFALEVTGVPPREIRKRVPAALELV--GLSHKHRALPAELSGGEQQRVAIARAIVNSPT 156 (214)
T ss_pred heEEEecCchhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCHHHhhCChhhcCHHHHHHHHHHHHHHcCCC
Confidence 99999999999984 99999962211 11112211 45555556677899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
+|||||||++||+++.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++
T Consensus 157 llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 157 ILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999874 47899999999999976 999999999974
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=364.20 Aligned_cols=213 Identities=30% Similarity=0.448 Sum_probs=181.0
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--CC
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--LQ 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i~ 1081 (1236)
+.++++||+++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|.+||.++.. .+
T Consensus 6 ~~l~~~~l~~~~~~---~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 82 (259)
T PRK14260 6 PAIKVKDLSFYYNT---SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRIN 82 (259)
T ss_pred ceEEEEEEEEEECC---eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEeccccccc
Confidence 46899999999974 2589999999999999999999999999999999999985 48999999999864 44
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhh---------hchHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMAN---------ANGFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~---------~~~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLA 1146 (1236)
...+|++++|+||+|.+|+.|++||+.-... ..+.+...-+ |+ .......+..||||||||++||
T Consensus 83 ~~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv~la 162 (259)
T PRK14260 83 INRLRRQIGMVFQRPNPFPMSIYENVAYGVRISAKLPQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQRLCIA 162 (259)
T ss_pred hHhhhhheEEEecccccCCccHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 5678899999999999999999999952111 1111211111 22 2345567789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEe-----CCEEEEecChhHHh
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVS-----QGMIVEKGSHESLI 1220 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~-----~G~Ive~Gt~~eLl 1220 (1236)
|||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||++++|+ +|++++.|+++++.
T Consensus 163 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~~~ 242 (259)
T PRK14260 163 RALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFGVTTQIF 242 (259)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeCCHHHHh
Confidence 9999999999999999999999999999999998777899999999999965 99999998 59999999999997
Q ss_pred hccC
Q 040099 1221 STKN 1224 (1236)
Q Consensus 1221 ~~~~ 1224 (1236)
+.+.
T Consensus 243 ~~~~ 246 (259)
T PRK14260 243 SNPL 246 (259)
T ss_pred cCCC
Confidence 6533
|
|
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=374.60 Aligned_cols=217 Identities=24% Similarity=0.398 Sum_probs=180.9
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC----CCCcEEEECCeecccCChHHH
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD----PSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~----~~~G~I~idG~di~~i~~~~l 1085 (1236)
++++|++++|+.+. ...+|+||||+|++||++||+|+||||||||+++|.|+.+ |++|+|++||.|+.+++...+
T Consensus 4 L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~~~ 83 (330)
T PRK15093 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPRER 83 (330)
T ss_pred EEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHHHH
Confidence 78999999996421 2459999999999999999999999999999999999986 589999999999988887655
Q ss_pred h----cceEEEcCCCC--CC-hhhHHHHHHHHhh------------------hchHHHhhhhchh---hhhcCCCCCCCh
Q 040099 1086 R----QQMGVVSQEPV--LF-SDTIRANIAEMAN------------------ANGFISGLQEGYD---TLVGERGVQLSG 1137 (1236)
Q Consensus 1086 R----~~i~~V~Qdp~--LF-~gTIreNL~~~a~------------------~~~~i~~lp~Gld---t~vge~G~~LSG 1137 (1236)
+ ++|+||+|+|. ++ ..||.+|+.+... +.+.++.+ |++ .........|||
T Consensus 84 ~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~--gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 84 RKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRV--GIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHC--CCCChHHHHhCCchhCCH
Confidence 3 47999999996 33 3589998853211 01111111 342 224566779999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|||||++|||||+.+|+|||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|+||++|+|+|.|
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999998754 7899999999999965 9999999999999999
Q ss_pred ChhHHhhccCcccHH
Q 040099 1215 SHESLISTKNGIYTS 1229 (1236)
Q Consensus 1215 t~~eLl~~~~g~y~~ 1229 (1236)
+++++++++...|.+
T Consensus 242 ~~~~i~~~p~~~y~~ 256 (330)
T PRK15093 242 PSKELVTTPHHPYTQ 256 (330)
T ss_pred CHHHHHhCCCCHHHH
Confidence 999998875556755
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=374.98 Aligned_cols=207 Identities=27% Similarity=0.468 Sum_probs=178.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|++ ..+|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|.|+...+ ...|++|
T Consensus 41 ~i~i~nl~k~y~~---~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~~~~-~~~~~~i 116 (340)
T PRK13536 41 AIDLAGVSKSYGD---KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVPARA-RLARARI 116 (340)
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECCcch-HHHhccE
Confidence 4899999999974 35999999999999999999999999999999999999999999999999997654 5678999
Q ss_pred EEEcCCCCCC-hhhHHHHHHHHhhh------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLF-SDTIRANIAEMANA------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF-~gTIreNL~~~a~~------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+|+||++.+| ..|++||+.-.+.. .++++. -|++........+||||||||++|||||+.+|++|
T Consensus 117 g~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~ll~~--~~L~~~~~~~~~~LS~G~kqrv~lA~aL~~~P~lL 194 (340)
T PRK13536 117 GVVPQFDNLDLEFTVRENLLVFGRYFGMSTREIEAVIPSLLEF--ARLESKADARVSDLSGGMKRRLTLARALINDPQLL 194 (340)
T ss_pred EEEeCCccCCCCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHH--cCCchhhCCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 9999999887 46999999622211 112211 12332333445689999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||++||+.+...+++.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 195 iLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~~~~l~~~ 262 (340)
T PRK13536 195 ILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGRPHALIDE 262 (340)
T ss_pred EEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhh
Confidence 9999999999999999999999875 47899999999999965 999999999999999999999764
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=362.78 Aligned_cols=209 Identities=30% Similarity=0.459 Sum_probs=181.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|++ .++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|++||.++..++...++++++
T Consensus 3 l~~~~l~~~~~~---~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (258)
T PRK13548 3 LEARNLSVRLGG---RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSPAELARRRA 79 (258)
T ss_pred EEEEeEEEEeCC---eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCHHHhhhheE
Confidence 789999999974 35899999999999999999999999999999999999999999999999998888888889999
Q ss_pred EEcCCCCC-ChhhHHHHHHHHhh--------hchHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHc------cCC
Q 040099 1091 VVSQEPVL-FSDTIRANIAEMAN--------ANGFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIV------KEP 1153 (1236)
Q Consensus 1091 ~V~Qdp~L-F~gTIreNL~~~a~--------~~~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALl------r~p 1153 (1236)
|+||++.+ +..|++||+..... ....+.. +. -|++.........||||||||++|||||+ .+|
T Consensus 80 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGe~qrv~la~al~~~~~~~~~p 159 (258)
T PRK13548 80 VLPQHSSLSFPFTVEEVVAMGRAPHGLSRAEDDALVAAALAQVDLAHLAGRDYPQLSGGEQQRVQLARVLAQLWEPDGPP 159 (258)
T ss_pred EEccCCcCCCCCCHHHHHHhhhcccCCCcHHHHHHHHHHHHHcCCHhHhcCCcccCCHHHHHHHHHHHHHhcccccCCCC
Confidence 99999987 67799999852111 0111111 11 15655566777899999999999999999 599
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
++|||||||++||+.+...+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 160 ~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~ 231 (258)
T PRK13548 160 RWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADGTPAEVLTP 231 (258)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeCCHHHHhCh
Confidence 9999999999999999999999999875 4789999999999987 4999999999999999999998763
|
|
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-39 Score=362.10 Aligned_cols=210 Identities=30% Similarity=0.417 Sum_probs=180.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~i--~~ 1082 (1236)
.|+++|++++|++ .++|+|+||+|++||.+||+|+||||||||+++|.|+++| ++|+|.+||.++... +.
T Consensus 4 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~~~ 80 (251)
T PRK14270 4 KMESKNLNLWYGE---KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVDV 80 (251)
T ss_pred EEEEEEeEEEECC---eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccccH
Confidence 4889999999974 3589999999999999999999999999999999999875 799999999999653 44
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhhc-------------hHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANAN-------------GFISGL--QEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~-------------~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||++.+|+.|++||+.-..... +.++.+ .+++..........||||||||++|||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lar 160 (251)
T PRK14270 81 VELRKRVGMVFQKPNPFPMSIYDNVAYGPRIHGIKDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQQRLCIAR 160 (251)
T ss_pred HHHHhheEEEecCCCcCCCcHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHHH
Confidence 57789999999999999999999996211110 111111 112223456677899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|++++|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 161 al~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~~~ 236 (251)
T PRK14270 161 TIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFNKTEKIFLE 236 (251)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeCCHHHHhcC
Confidence 999999999999999999999999999999988777899999999999865 999999999999999999999764
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=379.83 Aligned_cols=212 Identities=32% Similarity=0.495 Sum_probs=178.6
Q ss_pred eEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHHhcceE
Q 040099 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWIREKIG 464 (1236)
Q Consensus 389 ~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~~i~ 464 (1236)
|++++|++ .. + |+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+ ....+++++
T Consensus 4 ~l~~~~~~---~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~ 78 (354)
T TIGR02142 4 RFSKRLGD---FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIG 78 (354)
T ss_pred EEEEEECC---EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeE
Confidence 89999953 23 4 999999999999999999999999999999999999999999999986532 235678899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
||+|++.+|+. |++||+.++....... ++.+.++.. |++......+.+||||||||++|||||+
T Consensus 79 ~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gL~~~~~~~~~~LSgGqkqRvalAraL~ 147 (354)
T TIGR02142 79 YVFQEARLFPHLSVRGNLRYGMKRARPSERRISFERVIELL-----------GIGHLLGRLPGRLSGGEKQRVAIGRALL 147 (354)
T ss_pred EEecCCccCCCCcHHHHHHHHhhccChhHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999975 9999999875332221 233333333 4555555666799999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
.+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..++...|
T Consensus 148 ~~p~lllLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~~~~~ 227 (354)
T TIGR02142 148 SSPRLLLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAGPIAEVWASPDLPW 227 (354)
T ss_pred cCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEECCHHHHhcCcCccc
Confidence 99999999999999999999999999998754 7899999999999865 99999999999999999999887644333
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=357.95 Aligned_cols=207 Identities=34% Similarity=0.475 Sum_probs=179.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++|++++|+.. ++|+|+||+|+|||++||+|+||||||||+++|.|+++|++|+|++||.++.+.+. .++.++
T Consensus 1 l~~~~l~~~~~~~---~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~--~~~~i~ 75 (232)
T cd03300 1 IELENVSKFYGGF---VALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP--HKRPVN 75 (232)
T ss_pred CEEEeEEEEeCCe---eeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh--hhcceE
Confidence 4689999999743 59999999999999999999999999999999999999999999999999987654 367899
Q ss_pred EEcCCCCCChh-hHHHHHHHHhhhc--------hHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMANAN--------GFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a~~~--------~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
|+||+|.+|.+ |++||+....... ..+.. +. -|++.........||||||||++||||++++|++||||
T Consensus 76 ~~~q~~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lS~G~~qrl~laral~~~p~llllD 155 (232)
T cd03300 76 TVFQNYALFPHLTVFENIAFGLRLKKLPKAEIKERVAEALDLVQLEGYANRKPSQLSGGQQQRVAIARALVNEPKVLLLD 155 (232)
T ss_pred EEecccccCCCCcHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchhhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEc
Confidence 99999999975 9999985221110 01111 11 15666666777899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1160 EATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 156 EP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~~~~~~~~~ 221 (232)
T cd03300 156 EPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIGTPEEIYEE 221 (232)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHHhC
Confidence 99999999999999999998753 7899999999999865 999999999999999999999875
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-39 Score=361.33 Aligned_cols=210 Identities=30% Similarity=0.483 Sum_probs=180.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecc-cCChH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQ-KLQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~-~i~~~ 1083 (1236)
.++++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++. ..+..
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~~~ 79 (249)
T PRK14253 3 KFNIENLDLFYGE---NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNIDVA 79 (249)
T ss_pred eEEEeccEEEECC---eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEcccccchH
Confidence 4789999999974 3589999999999999999999999999999999999986 5999999999985 45667
Q ss_pred HHhcceEEEcCCCCCChhhHHHHHHHHhhhc-----h----HHH------hhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSDTIRANIAEMANAN-----G----FIS------GLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~-----~----~i~------~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
.+|+.++|+||+|.+|..|++||+.-..... + .+. .+.+++..........||||||||++||||
T Consensus 80 ~~~~~i~~~~q~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrv~lara 159 (249)
T PRK14253 80 DLRIKVGMVFQKPNPFPMSIYENVAYGLRAQGIKDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQRLCIART 159 (249)
T ss_pred HHHhheeEEecCCCcCcccHHHHHHhHHHhcCCCchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHHHHHHHHH
Confidence 8899999999999999999999996221110 0 111 111122345566778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+.+|+||||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|+|++.|+++++..+
T Consensus 160 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 234 (249)
T PRK14253 160 IAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHDDTQVIFSN 234 (249)
T ss_pred HHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHcC
Confidence 99999999999999999999999999999998777899999999999876 999999999999999999998754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-39 Score=354.44 Aligned_cols=228 Identities=30% Similarity=0.504 Sum_probs=185.6
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-C----CCcEEEECCeecCCCCHHH
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-P----QAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~----~~G~i~~~g~~~~~~~~~~ 458 (1236)
++++|++.+|+... ...+++||||++++||++||||+|||||||+.+.|+|+.+ | .+|+|.++|+|+-.++.+.
T Consensus 2 L~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~~ 81 (316)
T COG0444 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEKE 81 (316)
T ss_pred ceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHHH
Confidence 67899999997432 2579999999999999999999999999999999999998 4 5799999999999988765
Q ss_pred H---h-cceEEEccCCCC-Cc--hhHHH----HHhcCCCCCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 459 I---R-EKIGLVSQEPVL-LS--SSIRD----NIAYGKTHAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 459 ~---r-~~i~~v~Q~~~l-~~--~ti~~----ni~~g~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
+ | +.|+||||||.- ++ .||.+ -+.......+ .++..+.++.+++.+- +..+...+.+
T Consensus 82 ~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h~~~~~~~ea~~~a~~~L~~Vgi~~~--------~~~~~~YPhe 153 (316)
T COG0444 82 LRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLHGKGLSKKEAKERAIELLELVGIPDP--------ERRLKSYPHE 153 (316)
T ss_pred HHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHcCCCCH--------HHHHhhCCcc
Confidence 3 3 479999999842 22 24444 4443111101 2345555566655421 1233445569
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
||||||||+.||-||+.+|++||.||||+|||..++++|.+.|+++.+ |.|+|+|||++..+.. ||||+||..|+||
T Consensus 154 lSGGMrQRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iV 233 (316)
T COG0444 154 LSGGMRQRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIV 233 (316)
T ss_pred cCCcHHHHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEE
Confidence 999999999999999999999999999999999999999999999874 7899999999999865 9999999999999
Q ss_pred EEeCcccccccccchhhhhH
Q 040099 601 EKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~ 620 (1236)
|.|+.++++.+|...|.+..
T Consensus 234 E~g~~~~i~~~P~HPYT~~L 253 (316)
T COG0444 234 EEGPVEEIFKNPKHPYTRGL 253 (316)
T ss_pred EeCCHHHHhcCCCChHHHHH
Confidence 99999999999988898754
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-41 Score=334.83 Aligned_cols=224 Identities=23% Similarity=0.440 Sum_probs=191.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-RE 461 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~ 461 (1236)
+.+..+|+.++|. .++|+++|||++++||+|++.||||+||||.+.++.|+.+|++|+|.+||.|+..++.... |-
T Consensus 3 ~~L~a~~l~K~y~---kr~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~RArl 79 (243)
T COG1137 3 STLVAENLAKSYK---KRKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHKRARL 79 (243)
T ss_pred cEEEehhhhHhhC---CeeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHHHhhc
Confidence 3578999999996 3579999999999999999999999999999999999999999999999999999997654 55
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
.|||+||+|.+|.+ ||+|||..-.+.. ..+.+.+.+...+++.++.+ .+.......+.+||||||+|+-|||||..
T Consensus 80 GigYLpQE~SIFr~LtV~dNi~~vlE~~-~~d~~~~~~~~~l~~LL~ef--~i~hlr~~~a~sLSGGERRR~EIARaLa~ 156 (243)
T COG1137 80 GIGYLPQEASIFRKLTVEDNIMAVLEIR-EKDLKKAERKEELDALLEEF--HITHLRDSKAYSLSGGERRRVEIARALAA 156 (243)
T ss_pred CcccccccchHhhcCcHHHHHHHHHhhh-hcchhHHHHHHHHHHHHHHh--chHHHhcCcccccccchHHHHHHHHHHhc
Confidence 79999999999987 9999998754321 11122223333344445555 66777778899999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCch-hHhhcCeEEEEECCEEEEEeCcccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLS-LIRNANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~-~~~~ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
+|+.++||||++++||.+-..|++.++.++ +|--+++.-|... |+.-|||.+++.+|+|..+|+++|+.+++
T Consensus 157 ~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p~ei~~n~ 230 (243)
T COG1137 157 NPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSPEEIVNNE 230 (243)
T ss_pred CCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCHHHHhcCh
Confidence 999999999999999999999999999886 4678888889875 57779999999999999999999999863
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=365.24 Aligned_cols=227 Identities=29% Similarity=0.442 Sum_probs=187.0
Q ss_pred EEEEeEEEECCCC------CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH--
Q 040099 385 IELKDVNFSYPAR------PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-- 456 (1236)
Q Consensus 385 i~~~~v~f~y~~~------~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-- 456 (1236)
|+++||+|.|+.. .++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999631 13579999999999999999999999999999999999999999999999999887654
Q ss_pred -HHHhcceEEEccCCC--CC-chhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCCCCChHH
Q 040099 457 -KWIREKIGLVSQEPV--LL-SSSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQLSGGQ 528 (1236)
Q Consensus 457 -~~~r~~i~~v~Q~~~--l~-~~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgGq 528 (1236)
..+++.++|++|++. ++ ..|+.||+.+... ..+.+ .....+++.+..+ |+++ ..+..+..|||||
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~-----~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge 156 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKA-----ERLARASEMLRAV--DLDDSVLDKRPPQLSGGQ 156 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHH-----HHHHHHHHHHHHc--CCChhHhhCCCccCChHH
Confidence 346788999999983 44 3699999865321 11111 1112234445554 6653 5667778999999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~ 605 (1236)
|||++|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|++
T Consensus 157 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~ 236 (268)
T PRK10419 157 LQRVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPV 236 (268)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCCh
Confidence 9999999999999999999999999999999999999998853 7899999999999975 999999999999999999
Q ss_pred ccccccccchhhhh
Q 040099 606 SELLENPYGAYNRL 619 (1236)
Q Consensus 606 ~~l~~~~~~~y~~~ 619 (1236)
+++... .+.|...
T Consensus 237 ~~~~~~-~~~~~~~ 249 (268)
T PRK10419 237 GDKLTF-SSPAGRV 249 (268)
T ss_pred hhccCC-CCHHHHH
Confidence 998764 4445443
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=366.51 Aligned_cols=215 Identities=28% Similarity=0.428 Sum_probs=180.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~i--~~ 1082 (1236)
.|+++||+++|+.. ++|+|+||+|++||++||+|+||||||||+++|.|+.+ |++|+|.+||.++... +.
T Consensus 39 ~l~~~~l~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~~~ 115 (286)
T PRK14275 39 HVVAKNFSIYYGEF---EAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFTDE 115 (286)
T ss_pred EEEEeeeEEEECCE---EEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhcccch
Confidence 58999999999743 48999999999999999999999999999999999864 4999999999998643 33
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHh---hh------chHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMA---NA------NGFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a---~~------~~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++||||+|.+|..|++||+.-.. +. .+.+...-+ |+ ..........||||||||++|||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~qrv~LAr 195 (286)
T PRK14275 116 VLLRKKIGMVFQKPNPFPKSIFDNIAYGPRLHGINDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQQQRLCVAR 195 (286)
T ss_pred HHhhhcEEEECCCCCCCccCHHHHHHhHHHhcCCCcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHHHHHHHHHH
Confidence 46788999999999999899999996211 11 111111100 21 23345667899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+.+|++|||||||++||+++...+.+.|+++.+++|+|++||+++.+.. ||+|++|++|++++.|+++++.+++...
T Consensus 196 aL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g~~~~~~~~~~~~ 275 (286)
T PRK14275 196 TLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHAPTAQLFTNPKDR 275 (286)
T ss_pred HHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCCCcH
Confidence 999999999999999999999999999999988777899999999999865 9999999999999999999998764433
Q ss_pred c
Q 040099 1227 Y 1227 (1236)
Q Consensus 1227 y 1227 (1236)
|
T Consensus 276 ~ 276 (286)
T PRK14275 276 M 276 (286)
T ss_pred H
Confidence 3
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=364.57 Aligned_cols=208 Identities=27% Similarity=0.475 Sum_probs=179.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
.|+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++ |++|+|.++|.++.. .+.
T Consensus 39 ~l~i~~l~~~~~~---~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~~~ 115 (285)
T PRK14254 39 VIEARDLNVFYGD---EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVDP 115 (285)
T ss_pred eEEEEEEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEccccccch
Confidence 4899999999974 359999999999999999999999999999999999997 689999999999864 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh-----------hchHHHhhhhch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN-----------ANGFISGLQEGY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~-----------~~~~i~~lp~Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++||||++.+|..|++||+..... +.+.++.+ |+ .........+||||||||++|||
T Consensus 116 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~i~~~~~~~~~~LSgGe~qrv~LAr 193 (285)
T PRK14254 116 VALRRRIGMVFQKPNPFPKSIYDNVAYGLKIQGYDGDIDERVEESLRRA--ALWDEVKDQLDSSGLDLSGGQQQRLCIAR 193 (285)
T ss_pred HhhhccEEEEecCCccCcCCHHHHHHHHHHHcCCcHHHHHHHHHHHHHc--CCCchhHHHHhCCcccCCHHHHHHHHHHH
Confidence 678899999999999998999999962211 11112111 22 23456777899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEE-EEeCCEEEEecChhHHhhc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIA-VVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~-Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||+++|+||||||||++||+.+...+.+.|+++.+++|+|++||+++.+.. |||++ +|++|+|++.|+++++.++
T Consensus 194 aL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g~~~~~~~~ 270 (285)
T PRK14254 194 AIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFDDTDKIFEN 270 (285)
T ss_pred HHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeCCHHHHHhC
Confidence 999999999999999999999999999999998777899999999999876 99975 5799999999999999765
|
|
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=360.48 Aligned_cols=215 Identities=30% Similarity=0.470 Sum_probs=182.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeecccC--Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQKL--QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~i--~~ 1082 (1236)
.++++||++.|++ .++|+|+||+|++||++||+||||||||||+++|.|+.+ |++|+|.+||.+++.. +.
T Consensus 3 ~l~~~~v~~~~~~---~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~~ 79 (250)
T PRK14266 3 RIEVENLNTYFDD---AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAVDV 79 (250)
T ss_pred EEEEEeEEEEeCC---eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccccH
Confidence 3789999999974 358999999999999999999999999999999999975 3899999999998753 46
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||+|.+|+.|++||+....... ..+...-+ |+ ...++..+.+||||||||++|||
T Consensus 80 ~~~~~~i~~~~q~~~~~~~t~~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~qrv~lar 159 (250)
T PRK14266 80 VELRKKVGMVFQKPNPFPKSIFDNVAYGLRIHGEDDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQRLCIAR 159 (250)
T ss_pred HHHhhheEEEecCCccCcchHHHHHHhHHhhcCCCCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHHHHHHHH
Confidence 67899999999999999999999996221111 11111111 22 23356677899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
||+++|+||||||||++||+.+...+.+.|++..+++|+|++||+++.+.. ||+|++|++|++++.|+++++...+.+.
T Consensus 160 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g~~~~~~~~~~~~ 239 (250)
T PRK14266 160 TIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESGLTDQIFINPKDK 239 (250)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeCCHHHHHhCCCCh
Confidence 999999999999999999999999999999998778999999999999876 8999999999999999999997665554
Q ss_pred c
Q 040099 1227 Y 1227 (1236)
Q Consensus 1227 y 1227 (1236)
|
T Consensus 240 ~ 240 (250)
T PRK14266 240 R 240 (250)
T ss_pred H
Confidence 4
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-39 Score=355.06 Aligned_cols=204 Identities=35% Similarity=0.497 Sum_probs=172.8
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH---HHh
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK---WIR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~---~~r 460 (1236)
++++|+++.|+... .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+.. ..+
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 81 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQLR 81 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhHHHHHH
Confidence 78999999996321 25699999999999999999999999999999999999999999999999998776643 467
Q ss_pred cceEEEccCCCCCc-hhHHHHHhcCCC---CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 EKIGLVSQEPVLLS-SSIRDNIAYGKT---HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+.++|++|++.+|. .|+.||+.++.. ..+.+ ++.++++..+ ++......+.+||||||||+
T Consensus 82 ~~i~~~~q~~~~~~~~t~~~n~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~lS~G~~qrv 150 (220)
T TIGR02982 82 RNIGYIFQAHNLLGFLTARQNVQMALELQPNLSYQEARERARAMLEAVG-----------LGDHLDYYPHNLSGGQKQRV 150 (220)
T ss_pred hheEEEcCChhhcCCCCHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcC-----------ChhhhhcChhhCCHHHHHHH
Confidence 88999999999987 699999987532 12222 2333444444 44444445568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEE
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKI 599 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i 599 (1236)
+||||++++|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++....||+|++|++|++
T Consensus 151 ~laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 151 AIARALVHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRILDVADRIVHMEDGKL 219 (220)
T ss_pred HHHHHHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhhCCEEEEEECCEE
Confidence 999999999999999999999999999999999998863 7999999999997777999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=365.33 Aligned_cols=208 Identities=27% Similarity=0.473 Sum_probs=177.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc--CChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK--LQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~--i~~~~lR~~ 1088 (1236)
|+++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (275)
T PRK13639 2 LETRDLKYSYPDG--TEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKKSLLEVRKT 79 (275)
T ss_pred EEEEEEEEEeCCC--CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccchHHHHHhh
Confidence 6899999999732 358999999999999999999999999999999999999999999999999852 234567899
Q ss_pred eEEEcCCC--CCChhhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEP--VLFSDTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp--~LF~gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+|+||+| .+|..|++||+.-.. .+.+.++.+ |++.........||||||||++||||++++|+
T Consensus 80 i~~v~q~~~~~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 157 (275)
T PRK13639 80 VGIVFQNPDDQLFAPTVEEDVAFGPLNLGLSKEEVEKRVKEALKAV--GMEGFENKPPHHLSGGQKKRVAIAGILAMKPE 157 (275)
T ss_pred eEEEeeChhhhhccccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchhhcCChhhCCHHHHHHHHHHHHHhcCCC
Confidence 99999998 578899999995110 011122211 34334445667899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 158 llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 227 (275)
T PRK13639 158 IIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEGTPKEVFSD 227 (275)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 999999999999999999999999875 47899999999999875 999999999999999999998764
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=361.09 Aligned_cols=198 Identities=32% Similarity=0.446 Sum_probs=173.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 12 ~l~i~~l~~~~~~~---~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~-----~~~~~i 83 (257)
T PRK11247 12 PLLLNAVSKRYGER---TVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLA-----EAREDT 83 (257)
T ss_pred cEEEEEEEEEECCc---ceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHH-----HhhCce
Confidence 59999999999743 5899999999999999999999999999999999999999999999998763 467899
Q ss_pred EEEcCCCCCCh-hhHHHHHHHH------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEM------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
+|++|++.+|+ .|++||+.-. ..+.++++.+ |++........+||||||||++|||||+++|++|||||||
T Consensus 84 ~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqrl~laraL~~~p~lllLDEPt 161 (257)
T PRK11247 84 RLMFQDARLLPWKKVIDNVGLGLKGQWRDAALQALAAV--GLADRANEWPAALSGGQKQRVALARALIHRPGLLLLDEPL 161 (257)
T ss_pred EEEecCccCCCCCcHHHHHHhcccchHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCC
Confidence 99999999987 6999998521 1122233322 5555667778899999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChh
Q 040099 1163 SALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
++||+.+...+.+.|++.. .++|+|+|||+++.+.. ||+|++|++|++++.|+.+
T Consensus 162 ~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~~~ 219 (257)
T PRK11247 162 GALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLTVD 219 (257)
T ss_pred CCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecccc
Confidence 9999999999999998864 37899999999999865 9999999999999998765
|
|
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-39 Score=362.69 Aligned_cols=210 Identities=30% Similarity=0.471 Sum_probs=178.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i~~ 1082 (1236)
.++++||+++|+++ ++|+|+||+|++||++||+||||||||||+++|.|+++| ++|+|.+||.++.. .+.
T Consensus 4 ~l~i~~v~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~~~ 80 (258)
T PRK14241 4 RIDVKDLNIYYGSF---HAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDP 80 (258)
T ss_pred cEEEeeEEEEECCE---eeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEeccccccCh
Confidence 48999999999743 589999999999999999999999999999999999974 69999999999853 455
Q ss_pred HHHhcceEEEcCCCCCCh-hhHHHHHHHHhhh---------chHHHhhhh--ch----hhhhcCCCCCCChhHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFS-DTIRANIAEMANA---------NGFISGLQE--GY----DTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~---------~~~i~~lp~--Gl----dt~vge~G~~LSGGQrQRlaLA 1146 (1236)
..+|+.++|++|++.+|. .|++||+...... .+.+..+=+ |+ .........+||||||||++||
T Consensus 81 ~~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv~la 160 (258)
T PRK14241 81 VAVRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQRLCIA 160 (258)
T ss_pred HHHhcceEEEccccccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHHHHHH
Confidence 678899999999999997 5999998521111 111111111 22 3445667789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcCEEEEEe------CCEEEEecChhHH
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAHLIAVVS------QGMIVEKGSHESL 1219 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD~I~Vl~------~G~Ive~Gt~~eL 1219 (1236)
|||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+. .||+|++|+ +|+|++.|+++++
T Consensus 161 ral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~~~~~~ 240 (258)
T PRK14241 161 RAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEIDDTEKI 240 (258)
T ss_pred HHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecCCHHHH
Confidence 999999999999999999999999999999998876789999999999986 499999997 8999999999999
Q ss_pred hhc
Q 040099 1220 IST 1222 (1236)
Q Consensus 1220 l~~ 1222 (1236)
+..
T Consensus 241 ~~~ 243 (258)
T PRK14241 241 FSN 243 (258)
T ss_pred HhC
Confidence 765
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-39 Score=363.85 Aligned_cols=221 Identities=25% Similarity=0.407 Sum_probs=181.7
Q ss_pred cEEEeEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH
Q 040099 1010 EVQFLRVSFKYPTR------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~ 1083 (1236)
-|+++||+++|+.+ ...++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+..
T Consensus 4 ~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 83 (267)
T PRK15112 4 LLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGDYS 83 (267)
T ss_pred eEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCchh
Confidence 38999999999632 123699999999999999999999999999999999999999999999999999765666
Q ss_pred HHhcceEEEcCCCC--CCh-hhHHHHHHHHh-------------hhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPV--LFS-DTIRANIAEMA-------------NANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~--LF~-gTIreNL~~~a-------------~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLA 1146 (1236)
..|++++|+||+|. ++. -|+.+|+.... .+.+.++.+ |++ ........+||||||||++||
T Consensus 84 ~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LS~G~~qrv~la 161 (267)
T PRK15112 84 YRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDLEPEQREKQIIETLRQV--GLLPDHASYYPHMLAPGQKQRLGLA 161 (267)
T ss_pred hHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCCCHHHHHHHHHHHHHHc--CCChHHHhcCchhcCHHHHHHHHHH
Confidence 66788999999985 444 38888874111 111122221 332 222345578999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|||+++|+||||||||++||+++...+.+.|++..+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++.+.+
T Consensus 162 ral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~ 241 (267)
T PRK15112 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERGSTADVLASP 241 (267)
T ss_pred HHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecCCHHHHhcCC
Confidence 999999999999999999999999999999998753 7899999999999986 9999999999999999999998753
Q ss_pred -CcccHHhhh
Q 040099 1224 -NGIYTSLIE 1232 (1236)
Q Consensus 1224 -~g~y~~L~~ 1232 (1236)
+..+++++.
T Consensus 242 ~~~~~~~~~~ 251 (267)
T PRK15112 242 LHELTKRLIA 251 (267)
T ss_pred CCHHHHHHHH
Confidence 344556664
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=355.88 Aligned_cols=202 Identities=30% Similarity=0.433 Sum_probs=172.4
Q ss_pred cEEEeEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---H
Q 040099 1010 EVQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---L 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---l 1085 (1236)
-|+++||+++|++... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+... +
T Consensus 6 ~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 85 (228)
T PRK10584 6 IVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARAKL 85 (228)
T ss_pred eEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHHHH
Confidence 4899999999975321 25899999999999999999999999999999999999999999999999998877643 2
Q ss_pred -hcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1086 -RQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1086 -R~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
++.++|+||+|.+|.. |++||+.... .+.+++..+ |++.........||||||||++|||||++
T Consensus 86 ~~~~i~~~~q~~~l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~Ge~qrl~la~al~~ 163 (228)
T PRK10584 86 RAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQL--GLGKRLDHLPAQLSGGEQQRVALARAFNG 163 (228)
T ss_pred HhheEEEEEcccccCCCcCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCHhHhhCChhhCCHHHHHHHHHHHHHhc
Confidence 3689999999999875 9999985211 112222222 44444556677899999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~ 1213 (1236)
+|++|||||||++||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+++|.
T Consensus 164 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 164 RPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAARCDRRLRLVNGQLQEE 227 (228)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999988743 6899999999999988999999999999874
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=352.26 Aligned_cols=186 Identities=33% Similarity=0.540 Sum_probs=166.8
Q ss_pred EEEeEEEEECCCCCC--cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPH--IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~--~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|+++||+++|+++.+ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+|| +
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------~ 67 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------S 67 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC-------------E
Confidence 478999999975321 3599999999999999999999999999999999999999999999999 6
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+|+||+|.+|++|++||+. +.+++.+++..+|.|+++.+++.+.+||||||||++|||||+.+|+
T Consensus 68 i~~~~q~~~l~~~t~~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~lS~G~~qrv~laral~~~p~ 147 (204)
T cd03250 68 IAYVSQEPWIQNGTIRENILFGKPFDEERYEKVIKACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDAD 147 (204)
T ss_pred EEEEecCchhccCcHHHHhccCCCcCHHHHHHHHHHcCcHHHHHhccCcccceecCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999984 1224456677888899999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHH-HHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCE
Q 040099 1155 ILLLDEATSALDIESERVVQD-ALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGM 1209 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~-~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~ 1209 (1236)
++||||||++||+++.+.+.+ .+++.. +++|+|++||+++.+..||+|++|++|+
T Consensus 148 llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~~d~i~~l~~G~ 204 (204)
T cd03250 148 IYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPHADQIVVLDNGR 204 (204)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhhCCEEEEEeCCC
Confidence 999999999999999888877 456553 4689999999999998899999999985
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-39 Score=353.94 Aligned_cols=195 Identities=33% Similarity=0.509 Sum_probs=168.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc--CChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK--LQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~--i~~~~lR~~ 1088 (1236)
|+++||+++|+++ ++|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. .+...+|++
T Consensus 1 l~~~~l~~~~~~~---~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 77 (213)
T cd03262 1 IEIKNLHKSFGDF---HVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDKKNINELRQK 77 (213)
T ss_pred CEEEEEEEEECCe---EeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccchhHHHHHhc
Confidence 4789999999753 58999999999999999999999999999999999999999999999999853 455678899
Q ss_pred eEEEcCCCCCCh-hhHHHHHHHHh----h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFS-DTIRANIAEMA----N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~-gTIreNL~~~a----~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
++|+||+|.+|. .|++||+.... + +.+.++.+ |++..+.....+||||||||++||||++++|+
T Consensus 78 i~~~~q~~~~~~~~t~~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~~p~ 155 (213)
T cd03262 78 VGMVFQQFNLFPHLTVLENITLAPIKVKGMSKAEAEERALELLEKV--GLADKADAYPAQLSGGQQQRVAIARALAMNPK 155 (213)
T ss_pred ceEEecccccCCCCcHHHHHHhHHHHhcCCCHHHHHHHHHHHHHHc--CCHhHhhhCccccCHHHHHHHHHHHHHhcCCC
Confidence 999999999986 69999985211 1 11222222 56666667778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
+|||||||++||+++.+.+.+.|+++. .++|+|++||+++.+.. ||+|++|++|+|
T Consensus 156 llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 156 VMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999875 47899999999999965 999999999975
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-39 Score=370.99 Aligned_cols=194 Identities=25% Similarity=0.460 Sum_probs=169.5
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIR 1104 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIr 1104 (1236)
.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++.. ....+|++++|+||++.+|.. |++
T Consensus 6 ~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~~~~~i~~~~q~~~~~~~~tv~ 84 (302)
T TIGR01188 6 FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVR-EPRKVRRSIGIVPQYASVDEDLTGR 84 (302)
T ss_pred eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccc-CHHHHHhhcEEecCCCCCCCCCcHH
Confidence 358999999999999999999999999999999999999999999999999976 345678999999999999876 999
Q ss_pred HHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1105 ANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1105 eNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
||+.-.+. +.++++.+ |++........+||||||||++|||||+++|++|||||||++||+.+.+.
T Consensus 85 e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~~~~~ 162 (302)
T TIGR01188 85 ENLEMMGRLYGLPKDEAEERAEELLELF--ELGEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRA 162 (302)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhHhCCchhhCCHHHHHHHHHHHHHhcCCCEEEEeCCCcCCCHHHHHH
Confidence 99952221 12222222 44444556667899999999999999999999999999999999999999
Q ss_pred HHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1173 VQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1173 I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+++.|++.. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.++
T Consensus 163 l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~ 214 (302)
T TIGR01188 163 IWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEGTPEELKRR 214 (302)
T ss_pred HHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECCHHHHHHh
Confidence 999999875 46899999999999975 999999999999999999999765
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-39 Score=361.92 Aligned_cols=206 Identities=28% Similarity=0.447 Sum_probs=180.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.+||.++...+...+|+.++
T Consensus 2 l~~~~l~~~~~~~---~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 78 (256)
T TIGR03873 2 LRLSRVSWSAGGR---LIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSRRARARRVA 78 (256)
T ss_pred ceEEeEEEEECCE---EEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCHHHHhhheE
Confidence 6899999999743 5999999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEcCCCC-CChhhHHHHHHHH---h-------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1091 VVSQEPV-LFSDTIRANIAEM---A-------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1091 ~V~Qdp~-LF~gTIreNL~~~---a-------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|+||++. .+..|++||+... . .+.+.+..+ |+..........||||||||++||||++.+|
T Consensus 79 ~~~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p 156 (256)
T TIGR03873 79 LVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALART--ELSHLADRDMSTLSGGERQRVHVARALAQEP 156 (256)
T ss_pred EecccCccCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHc--CcHhhhcCCcccCCHHHHHHHHHHHHHhcCC
Confidence 9999985 4567999999521 0 011122222 4554556677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
+++||||||++||+.+...+.+.|++..+ ++|+|++||+++.+. .||+|++|++|++++.|+++++..
T Consensus 157 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 226 (256)
T TIGR03873 157 KLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAGPPREVLT 226 (256)
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEecCHHHhhC
Confidence 99999999999999999999999998753 689999999999995 599999999999999999999865
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-39 Score=353.26 Aligned_cols=195 Identities=34% Similarity=0.545 Sum_probs=166.6
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~lR~ 1087 (1236)
++++|++++|+.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++..++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (214)
T TIGR02673 2 IEFHNVSKAYPGG--VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQLPLLRR 79 (214)
T ss_pred EEEEeeeEEeCCC--ceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHHHHHHHh
Confidence 6899999999532 3599999999999999999999999999999999999999999999999999877643 4688
Q ss_pred ceEEEcCCCCCCh-hhHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFS-DTIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~-gTIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
.++|+||+|.+|. .|++||+.-... +.++++.+ |++........+||||||||++|||||+++|+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrl~la~al~~~p~ 157 (214)
T TIGR02673 80 RIGVVFQDFRLLPDRTVYENVALPLEVRGKKEREIQRRVGAALRQV--GLEHKADAFPEQLSGGEQQRVAIARAIVNSPP 157 (214)
T ss_pred heEEEecChhhccCCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhhhhCChhhCCHHHHHHHHHHHHHhCCCC
Confidence 9999999999986 699999852211 11122211 34334445567899999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~ 1209 (1236)
+|||||||++||+.+...+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+
T Consensus 158 lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 158 LLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 999999999999999999999999875 47899999999999976 99999999985
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-39 Score=362.86 Aligned_cols=209 Identities=29% Similarity=0.436 Sum_probs=182.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+++ .+|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+...+++.+
T Consensus 7 ~l~i~~l~~~~~~~---~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i 83 (265)
T PRK10253 7 RLRGEQLTLGYGKY---TVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYASKEVARRI 83 (265)
T ss_pred EEEEEEEEEEECCE---EEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCHHHHhhhe
Confidence 68999999999743 589999999999999999999999999999999999999999999999999988888888999
Q ss_pred EEEcCCCCCCh-hhHHHHHHHHh-h-----------hchHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLFS-DTIRANIAEMA-N-----------ANGFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~~a-~-----------~~~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+||++.+|. .|++||+.... . ..+.+.. +. -|++.........||||||||++||||++++|+
T Consensus 84 ~~v~q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LS~Gq~qrv~laral~~~p~ 163 (265)
T PRK10253 84 GLLAQNATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHLADQSVDTLSGGQRQRAWIAMVLAQETA 163 (265)
T ss_pred EEeeccCcCCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHHhcCCcccCChHHHHHHHHHHHHhcCCC
Confidence 99999998875 69999985210 0 0011111 11 155555667788999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
+|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++..
T Consensus 164 llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 233 (265)
T PRK10253 164 IMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQGAPKEIVT 233 (265)
T ss_pred EEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhh
Confidence 9999999999999999999999998753 7899999999998865 99999999999999999999865
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-39 Score=354.70 Aligned_cols=192 Identities=28% Similarity=0.483 Sum_probs=163.5
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++||+++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|++++|
T Consensus 1 ~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~-----~~~~~i~~ 72 (213)
T cd03235 1 EVEDLTVSYGG---HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE-----KERKRIGY 72 (213)
T ss_pred CcccceeEECC---EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH-----HHHhheEE
Confidence 36799999974 35899999999999999999999999999999999999999999999998875 46889999
Q ss_pred EcCCCCC---ChhhHHHHHHHHhh----------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1092 VSQEPVL---FSDTIRANIAEMAN----------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1092 V~Qdp~L---F~gTIreNL~~~a~----------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
|||+|.+ |+.|++||+..... +.++++.+ |++........+||||||||++|||||+++
T Consensus 73 v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~qrv~la~al~~~ 150 (213)
T cd03235 73 VPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERV--GLSELADRQIGELSGGQQQRVLLARALVQD 150 (213)
T ss_pred eccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHc--CCHHHHhCCcccCCHHHHHHHHHHHHHHcC
Confidence 9999976 66899999852111 11112211 455455667789999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEec
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~G 1214 (1236)
|++|||||||++||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++| +++.|
T Consensus 151 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~~g 213 (213)
T cd03235 151 PDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVASG 213 (213)
T ss_pred CCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-EeecC
Confidence 99999999999999999999999999875 57899999999999965 9999999886 55654
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-39 Score=347.68 Aligned_cols=211 Identities=32% Similarity=0.494 Sum_probs=178.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe---ecccCChHHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV---EIQKLQVKWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~---di~~i~~~~lR 1086 (1236)
.|+++|++..|+.. ++++|||++|+.||.+|+.||||||||||+++|.|+..|++|.|.+||. |.++++.+ .
T Consensus 2 ~i~i~~~~~~~~~~---~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~~~~~--~ 76 (345)
T COG1118 2 SIRINNVKKRFGAF---GALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSNLAVR--D 76 (345)
T ss_pred ceeehhhhhhcccc---cccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhccchh--h
Confidence 47888999999754 5899999999999999999999999999999999999999999999999 77774443 4
Q ss_pred cceEEEcCCCCCCh-hhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1087 QQMGVVSQEPVLFS-DTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~-gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
++||+|+|+..||. .||++||+ ..+++.++++-. .++-.-..-..+||||||||+||||||..
T Consensus 77 R~VGfvFQ~YALF~HmtVa~NIAFGl~~~~~~p~~~~~r~rv~elL~lv--qL~~la~ryP~QLSGGQrQRVALARALA~ 154 (345)
T COG1118 77 RKVGFVFQHYALFPHMTVADNIAFGLKVRKERPSEAEIRARVEELLRLV--QLEGLADRYPAQLSGGQRQRVALARALAV 154 (345)
T ss_pred cceeEEEechhhcccchHHhhhhhcccccccCCChhhHHHHHHHHHHHh--cccchhhcCchhcChHHHHHHHHHHHhhc
Confidence 68999999999986 59999996 122222322211 12222234567999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
.|++|+||||.++||+.-.+.+++-|++... +.|+++|||+.+.+.. ||||+||++|+|...|+|+|....+++.|
T Consensus 155 eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqvg~p~ev~~~P~s~f 233 (345)
T COG1118 155 EPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQVGPPDEVYDHPASRF 233 (345)
T ss_pred CCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeeeCCHHHHhcCCCccc
Confidence 9999999999999999999999999988653 7899999999999855 99999999999999999999998877665
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=403.15 Aligned_cols=103 Identities=31% Similarity=0.515 Sum_probs=93.5
Q ss_pred chhh-hhcCCCCCCChhHHHHHHHHHHHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh
Q 040099 1123 GYDT-LVGERGVQLSGGQKQRVAIARAIVKEP---KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK 1197 (1236)
Q Consensus 1123 Gldt-~vge~G~~LSGGQrQRlaLARALlr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~ 1197 (1236)
|++. .++.....||||||||++|||+|+++| +++||||||++||+.+...+.+.|+++. ++.|+|+|+|+++.+.
T Consensus 818 gL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIiitH~~~~i~ 897 (943)
T PRK00349 818 GLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVIEHNLDVIK 897 (943)
T ss_pred CCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH
Confidence 4543 367778899999999999999999999 9999999999999999999999999875 5789999999999999
Q ss_pred hcCEEEEE------eCCEEEEecChhHHhhccCc
Q 040099 1198 NAHLIAVV------SQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1198 ~aD~I~Vl------~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
.||+|++| ++|+|++.|+++++.+.+++
T Consensus 898 ~aD~ii~Lgp~~G~~~G~Iv~~Gt~~el~~~~~s 931 (943)
T PRK00349 898 TADWIIDLGPEGGDGGGEIVATGTPEEVAKVEAS 931 (943)
T ss_pred hCCEEEEecCCcCCCCCEEEEeCCHHHHHhCccc
Confidence 99999999 79999999999999987544
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-39 Score=360.29 Aligned_cols=214 Identities=26% Similarity=0.454 Sum_probs=181.3
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-----CcEEEECCeeccc--CC
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-----SGHITLDGVEIQK--LQ 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-----~G~I~idG~di~~--i~ 1081 (1236)
+.|+++||+++|+++ .+|+|+||+|++||.+||+|+||||||||+++|.|+++|+ +|+|.+||.|+.. .+
T Consensus 6 ~~l~~~nl~~~~~~~---~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~~ 82 (261)
T PRK14258 6 PAIKVNNLSFYYDTQ---KILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRVN 82 (261)
T ss_pred ceEEEeeEEEEeCCe---eEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhccccc
Confidence 469999999999743 4899999999999999999999999999999999999985 8999999999853 35
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHH----hh--hhchhhhhcCCCCCCChhHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFIS----GL--QEGYDTLVGERGVQLSGGQKQRVAIA 1146 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~----~l--p~Gldt~vge~G~~LSGGQrQRlaLA 1146 (1236)
...+|+.++|+||++.+|..|++||+...... .+.+. .+ .+.++...+..+..||||||||++||
T Consensus 83 ~~~~~~~i~~~~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~qrv~la 162 (261)
T PRK14258 83 LNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQRLCIA 162 (261)
T ss_pred hHHhhccEEEEecCCccCcccHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHHHHHHH
Confidence 56788999999999999999999999522111 01111 11 11123345677789999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC-----CEEEEecChhH
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ-----GMIVEKGSHES 1218 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~-----G~Ive~Gt~~e 1218 (1236)
|||+++|++|||||||++||+++...+.+.|+++. .++|+|+|||+++.+.. ||+|++|++ |++++.|++++
T Consensus 163 ral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~~~~~ 242 (261)
T PRK14258 163 RALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEFGLTKK 242 (261)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEeCCHHH
Confidence 99999999999999999999999999999999853 47999999999999865 999999999 99999999999
Q ss_pred HhhccCc
Q 040099 1219 LISTKNG 1225 (1236)
Q Consensus 1219 Ll~~~~g 1225 (1236)
+...+..
T Consensus 243 ~~~~~~~ 249 (261)
T PRK14258 243 IFNSPHD 249 (261)
T ss_pred HHhCCCC
Confidence 9875443
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-39 Score=359.07 Aligned_cols=219 Identities=29% Similarity=0.499 Sum_probs=183.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC------eecccCChH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG------VEIQKLQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG------~di~~i~~~ 1083 (1236)
-++++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+++|++|+|.++| .++.+.+..
T Consensus 10 ~i~~~~~~~~~~~~---~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~~~ 86 (257)
T PRK14246 10 VFNISRLYLYINDK---AILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQIDAI 86 (257)
T ss_pred heeeeeEEEecCCc---eeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCCHH
Confidence 58999999999753 589999999999999999999999999999999999999987666655 677777777
Q ss_pred HHhcceEEEcCCCCCChh-hHHHHHHHHhhhch---------HHHh-hhh-chh----hhhcCCCCCCChhHHHHHHHHH
Q 040099 1084 WLRQQMGVVSQEPVLFSD-TIRANIAEMANANG---------FISG-LQE-GYD----TLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~g-TIreNL~~~a~~~~---------~i~~-lp~-Gld----t~vge~G~~LSGGQrQRlaLAR 1147 (1236)
.+|++++|+||+|.+|.+ |++||+.-...... .+.. +.. |++ ...+..+..||||||||++|||
T Consensus 87 ~~~~~i~~~~q~~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qrl~lar 166 (257)
T PRK14246 87 KLRKEVGMVFQQPNPFPHLSIYDNIAYPLKSHGIKEKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQRLTIAR 166 (257)
T ss_pred HHhcceEEEccCCccCCCCcHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHHHHHHH
Confidence 889999999999999976 99999962211110 0111 111 332 2345677889999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGI 1226 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~ 1226 (1236)
|++++|++|||||||++||+.++..+.+.|+++.+++|+|+|||+++.+. .||++++|++|++++.|+++++.+.+...
T Consensus 167 al~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g~~~~~~~~~~~~ 246 (257)
T PRK14246 167 ALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWGSSNEIFTSPKNE 246 (257)
T ss_pred HHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCcH
Confidence 99999999999999999999999999999998877799999999999995 59999999999999999999998765544
Q ss_pred cHHhh
Q 040099 1227 YTSLI 1231 (1236)
Q Consensus 1227 y~~L~ 1231 (1236)
|.+.+
T Consensus 247 ~~~~~ 251 (257)
T PRK14246 247 LTEKY 251 (257)
T ss_pred HHHHH
Confidence 55443
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=348.12 Aligned_cols=191 Identities=23% Similarity=0.376 Sum_probs=163.6
Q ss_pred cEEEEeEEEECCCC-CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC---CCCcEEEECCeecCCCCHHHH
Q 040099 384 DIELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD---PQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~---~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
.+.++||+|.|+.. +++++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 37899999999853 35679999999999999999999999999999999999999 89999999999987664 356
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+++++|++|++.+|.. |++||+.++... . ..+....||||||||++|||||
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~------~----------------------~~~~~~~LS~Ge~qrl~laral 133 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRC------K----------------------GNEFVRGISGGERKRVSIAEAL 133 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhh------c----------------------cccchhhCCHHHHHHHHHHHHH
Confidence 7789999999988875 999999875310 0 2234458999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEec-CchhHh-hcCeEEEEECCEEEEEe
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSH-RLSLIR-NANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH-~~~~~~-~ad~i~vl~~G~i~~~g 603 (1236)
+++|++|||||||++||+.+++.+.+.|+++.+ +.|+|+++| +.+.+. .||++++|++|++++.|
T Consensus 134 ~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 134 VSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred hhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999999999999999999998854 467676655 456664 59999999999998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-39 Score=361.72 Aligned_cols=225 Identities=27% Similarity=0.420 Sum_probs=183.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee-----cCCCCHHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN-----LKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~-----~~~~~~~~ 458 (1236)
-|+++||+++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.+ +...+...
T Consensus 3 ~l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 3 LLQVSGLSKSYGG---GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred eEEEeeeEEEeCC---ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 4899999999963 358999999999999999999999999999999999999999999999987 66665543
Q ss_pred ----HhcceEEEccCCC--CC-chhHHHHHhcCC---CCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChH
Q 040099 459 ----IREKIGLVSQEPV--LL-SSSIRDNIAYGK---THATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGG 527 (1236)
Q Consensus 459 ----~r~~i~~v~Q~~~--l~-~~ti~~ni~~g~---~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgG 527 (1236)
+++.++|++|++. ++ ..|+.+|+.+.. ......+. ...+.+++..+ |++ +.....+..||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~-----~~~~~~~l~~l--~l~~~~~~~~~~~LSgG 152 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNI-----RAAAHDWLEEV--EIDPTRIDDLPRAFSGG 152 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhcccchHHH-----HHHHHHHHHHc--CCChhhhhcCchhcCHH
Confidence 3467999999984 33 348888886421 00011111 12234566666 454 4667778899999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
||||++|||||+++|++|||||||++||+.+...+.+.|+++.+ +.|+|++||+++.+.. ||++++|++|++++.|+
T Consensus 153 ~~qrv~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~~ 232 (253)
T TIGR02323 153 MQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESGL 232 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999988743 7899999999999975 99999999999999999
Q ss_pred cccccccccchhhh
Q 040099 605 HSELLENPYGAYNR 618 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~ 618 (1236)
++++..++...|.+
T Consensus 233 ~~~~~~~~~~~~~~ 246 (253)
T TIGR02323 233 TDQVLDDPQHPYTQ 246 (253)
T ss_pred HHHHhcCCCCHHHH
Confidence 99887654444443
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-38 Score=401.47 Aligned_cols=99 Identities=29% Similarity=0.461 Sum_probs=89.2
Q ss_pred Ccccc-ccCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh
Q 040099 512 GLDTN-VGEHGIQLSGGQKQRVAIARAMIKDP--RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN 587 (1236)
Q Consensus 512 g~~t~-~g~~g~~LSgGqkqRiaiARal~~~p--~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ 587 (1236)
|++.. .+....+|||||+|||+|||||..+| ++|||||||++||+.....+.+.|+++. +|.|+|+|+|+++.+..
T Consensus 475 gL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~~~i~~ 554 (924)
T TIGR00630 475 GLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDEETIRA 554 (924)
T ss_pred cccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHhh
Confidence 66544 67788899999999999999999986 8999999999999999999999999885 47899999999999999
Q ss_pred cCeEEEE------ECCEEEEEeCcccccc
Q 040099 588 ANIIAVI------QQGKIVEKGTHSELLE 610 (1236)
Q Consensus 588 ad~i~vl------~~G~i~~~g~~~~l~~ 610 (1236)
||+|++| ++|+|+++|+++++..
T Consensus 555 aD~vi~LgpgaG~~~G~Iv~~g~~~el~~ 583 (924)
T TIGR00630 555 ADYVIDIGPGAGIHGGEVVASGTPEEILA 583 (924)
T ss_pred CCEEEEecccccCCCCEEeeccCHHHHhc
Confidence 9999999 8999999998777643
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-39 Score=359.73 Aligned_cols=215 Identities=27% Similarity=0.427 Sum_probs=178.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC----CCcEEEECCeecCCCCHHHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP----QAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~----~~G~i~~~g~~~~~~~~~~~ 459 (1236)
.|+++|++|+| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ...
T Consensus 4 ~l~~~~l~~~~-~---~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~--~~~ 77 (254)
T PRK10418 4 QIELRNIALQA-A---QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC--ALR 77 (254)
T ss_pred EEEEeCeEEEe-c---cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc--ccc
Confidence 58999999999 2 3699999999999999999999999999999999999999 999999999988632 223
Q ss_pred hcceEEEccCCC-CCc--hhHHHHHhcC----CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPV-LLS--SSIRDNIAYG----KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~-l~~--~ti~~ni~~g----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++.++||+|++. .|. .|+.+|+.+. .....++++.++++..++.++ ++.++..+.+||||||||+
T Consensus 78 ~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 78 GRKIATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAALEAVGLENA--------ARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred cceEEEEecCCccccCccccHHHHHHHHHHHcCCChHHHHHHHHHHHcCCCCh--------hhhhhcCCcccCHHHHHHH
Confidence 467999999984 343 4888887542 111223455555655554321 1245666779999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++|||||||++||+.+...+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|++++.|+.+++.
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~~~~~~~ 229 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQGDVETLF 229 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEecCHHHHh
Confidence 999999999999999999999999999999999998753 7899999999999864 9999999999999999999987
Q ss_pred ccc
Q 040099 610 ENP 612 (1236)
Q Consensus 610 ~~~ 612 (1236)
..+
T Consensus 230 ~~~ 232 (254)
T PRK10418 230 NAP 232 (254)
T ss_pred hCC
Confidence 653
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=321.98 Aligned_cols=220 Identities=32% Similarity=0.545 Sum_probs=184.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE---------- 453 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~---------- 453 (1236)
.++++|+.++|.. ..||++||++.++|+.+.|+|.|||||||++++|.=+..|+.|+|.++|..++-
T Consensus 6 ~l~v~dlHK~~G~---~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~~ 82 (256)
T COG4598 6 ALEVEDLHKRYGE---HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLKP 82 (256)
T ss_pred ceehhHHHhhccc---chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCeee
Confidence 5899999999963 469999999999999999999999999999999999999999999999988742
Q ss_pred CC---HHHHhcceEEEccCCCCCc-hhHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 454 FQ---LKWIREKIGLVSQEPVLLS-SSIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 454 ~~---~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
.+ .+.+|.+.|+|+|+..|++ .||.||+.-+.- ..+..+..+.+ ..++.+. |+.......+..|||
T Consensus 83 ad~~q~~r~Rs~L~mVFQ~FNLWsHmtvLeNViEaPvhVLg~~k~ea~e~A-----e~~L~kV--Gi~ek~~~YP~~LSG 155 (256)
T COG4598 83 ADKRQLQRLRTRLGMVFQHFNLWSHMTVLENVIEAPVHVLGVSKAEAIERA-----EKYLAKV--GIAEKADAYPAHLSG 155 (256)
T ss_pred CCHHHHHHHHHHhhHhhhhcchhHHHHHHHHHHhcchHhhcCCHHHHHHHH-----HHHHHHh--CchhhhhcCccccCc
Confidence 12 3457899999999999986 599999974321 11222222211 1233333 555555566679999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
||+||+||||||..+|+++++|||||||||+---.+.+.++++. +|||.++|||.+.+.++ +.+++.|++|.|-|+|+
T Consensus 156 GQQQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~iEE~G~ 235 (256)
T COG4598 156 GQQQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKIEEEGP 235 (256)
T ss_pred hHHHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeecceecccCC
Confidence 99999999999999999999999999999999999999998886 58999999999999988 89999999999999999
Q ss_pred ccccccccc
Q 040099 605 HSELLENPY 613 (1236)
Q Consensus 605 ~~~l~~~~~ 613 (1236)
++++..+|.
T Consensus 236 P~qvf~nP~ 244 (256)
T COG4598 236 PEQVFGNPQ 244 (256)
T ss_pred hHHHhcCCC
Confidence 999998753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=352.39 Aligned_cols=198 Identities=31% Similarity=0.482 Sum_probs=168.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH---HHhc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK---WLRQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~---~lR~ 1087 (1236)
|+++||+++|+.. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+++.. .+|+
T Consensus 2 l~~~~l~~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~ 79 (222)
T PRK10908 2 IRFEHVSKAYLGG--RQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNREVPFLRR 79 (222)
T ss_pred EEEEeeEEEecCC--CeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhHHHHHHh
Confidence 6899999999532 3589999999999999999999999999999999999999999999999999877654 3688
Q ss_pred ceEEEcCCCCCC-hhhHHHHHHHHh---hh---------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLF-SDTIRANIAEMA---NA---------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF-~gTIreNL~~~a---~~---------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
.++|+||+|.+| ..|++||+.-.. +. .++++.+ |++........+||||||||++||||++++|+
T Consensus 80 ~i~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~laral~~~p~ 157 (222)
T PRK10908 80 QIGMIFQDHHLLMDRTVYDNVAIPLIIAGASGDDIRRRVSAALDKV--GLLDKAKNFPIQLSGGEQQRVGIARAVVNKPA 157 (222)
T ss_pred heEEEecCccccccccHHHHHHhHHHhcCCCHHHHHHHHHHHHHHc--CChhhhhCCchhCCHHHHHHHHHHHHHHcCCC
Confidence 999999999874 679999995211 11 1122211 34444556678999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEE
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive 1212 (1236)
+|||||||++||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|+++.
T Consensus 158 llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~ 217 (222)
T PRK10908 158 VLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHG 217 (222)
T ss_pred EEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEcc
Confidence 999999999999999999999999874 46899999999999976 89999999999853
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=360.29 Aligned_cols=212 Identities=26% Similarity=0.429 Sum_probs=182.1
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeecc----
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQ---- 1078 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~---- 1078 (1236)
.+.|+++|++++|+++ ++|+|+||+|++||++||+|+||||||||+++|.|+.+| ++|+|.+||.++.
T Consensus 14 ~~~l~~~~l~~~~~~~---~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~~~~~~ 90 (265)
T PRK14252 14 QQKSEVNKLNFYYGGY---QALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNVNILSP 90 (265)
T ss_pred CceEEEEEEEEEECCe---eeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCcccccccc
Confidence 4679999999999743 599999999999999999999999999999999999875 7999999998874
Q ss_pred cCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhh---------chHHHh------hhhchhhhhcCCCCCCChhHHHHH
Q 040099 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA---------NGFISG------LQEGYDTLVGERGVQLSGGQKQRV 1143 (1236)
Q Consensus 1079 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~---------~~~i~~------lp~Gldt~vge~G~~LSGGQrQRl 1143 (1236)
..+...+|+.++|+||+|.+|.+|++||+...... .+.+.. +.+++....+.....||||||||+
T Consensus 91 ~~~~~~~~~~i~~~~q~~~~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qrv 170 (265)
T PRK14252 91 EVDPIEVRMRISMVFQKPNPFPKSIFENVAYGLRIRGVKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRL 170 (265)
T ss_pred ccCHHHHhccEEEEccCCcCCcchHHHHHHhHHHHcCCChHHHHHHHHHHHHHHcCCchhhhHHHhCCcccCCHHHHHHH
Confidence 33456788999999999999999999999521110 111111 112334556677889999999999
Q ss_pred HHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1144 aLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||+++|++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|++++.|+++++...
T Consensus 171 ~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~ 250 (265)
T PRK14252 171 CIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEFGATDTIFIK 250 (265)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhC
Confidence 9999999999999999999999999999999999998777899999999999965 999999999999999999999764
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-39 Score=347.01 Aligned_cols=191 Identities=24% Similarity=0.367 Sum_probs=164.0
Q ss_pred cEEEeEEEEECCCC-CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC---CCCcEEEECCeecccCChHHH
Q 040099 1010 EVQFLRVSFKYPTR-PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD---PSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~-~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~---~~~G~I~idG~di~~i~~~~l 1085 (1236)
.+.++||+|.|+.. .+.++|+|+||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++...+ ...
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~-~~~ 81 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA-EKY 81 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch-hhh
Confidence 36899999999853 34579999999999999999999999999999999999999 89999999999998765 457
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA 1164 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSa 1164 (1236)
|++++|+||++.+|.. |++||+.-.+... ..+....||||||||++|||||+++|++|||||||++
T Consensus 82 ~~~i~~~~q~~~~~~~~tv~~~l~~~~~~~-------------~~~~~~~LS~Ge~qrl~laral~~~p~llllDEPt~~ 148 (202)
T cd03233 82 PGEIIYVSEEDVHFPTLTVRETLDFALRCK-------------GNEFVRGISGGERKRVSIAEALVSRASVLCWDNSTRG 148 (202)
T ss_pred cceEEEEecccccCCCCcHHHHHhhhhhhc-------------cccchhhCCHHHHHHHHHHHHHhhCCCEEEEcCCCcc
Confidence 8899999999988875 9999995322211 2344567999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEe-cCchhh-hhcCEEEEEeCCEEEEec
Q 040099 1165 LDIESERVVQDALDQVMV--DRTTLVVA-HRLSTI-KNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1165 LD~~te~~I~~~L~~~~~--~~TvI~Ia-HRl~ti-~~aD~I~Vl~~G~Ive~G 1214 (1236)
||+++.+.+.+.|++..+ ++|+|+++ |+++.+ +.||+|++|++|++++.|
T Consensus 149 LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~g 202 (202)
T cd03233 149 LDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYYG 202 (202)
T ss_pred CCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEecC
Confidence 999999999999998754 46766665 555666 459999999999998865
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-39 Score=357.97 Aligned_cols=208 Identities=26% Similarity=0.410 Sum_probs=173.1
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc--cCCCCcEEEECCeecccCChHHH-hc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKWL-RQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~--~~~~~G~I~idG~di~~i~~~~l-R~ 1087 (1236)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.++...+.... |.
T Consensus 1 l~~~~l~~~~~~---~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~~~~~~ 77 (243)
T TIGR01978 1 LKIKDLHVSVED---KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPDERARA 77 (243)
T ss_pred CeEeeEEEEECC---EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHHHhhcc
Confidence 478999999974 3589999999999999999999999999999999999 47999999999999988876554 45
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHhhh------------chHHHhhhh-----chhh-hhcCCCC-CCChhHHHHHHHHH
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMANA------------NGFISGLQE-----GYDT-LVGERGV-QLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a~~------------~~~i~~lp~-----Gldt-~vge~G~-~LSGGQrQRlaLAR 1147 (1236)
.++||||+|.+|.+ |++||+...... .++.....+ |++. ....... .||||||||++|||
T Consensus 78 ~i~~v~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~la~ 157 (243)
T TIGR01978 78 GLFLAFQYPEEIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQ 157 (243)
T ss_pred ceEeeeccccccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHHHHH
Confidence 69999999998876 899998522110 111111111 3432 2233333 59999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecChhHHhh
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||+.+|++|||||||++||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++-.
T Consensus 158 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~ 234 (243)
T TIGR01978 158 MALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSGDVELAKE 234 (243)
T ss_pred HHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEecCHHHhcc
Confidence 9999999999999999999999999999999875 46899999999999976 79999999999999999986643
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-39 Score=358.53 Aligned_cols=212 Identities=31% Similarity=0.426 Sum_probs=180.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-----CCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-----SSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-----~~G~I~idG~di~~--i~~ 1082 (1236)
.+.+++.+++|.. .++|+|+||+|++||++||+|+||||||||+++|.|+++| ++|+|++||.++.. .+.
T Consensus 8 ~~~~~~~~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~~~ 84 (261)
T PRK14263 8 VMDCKLDKIFYGN---FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGVDP 84 (261)
T ss_pred eEEEEeEEEEeCC---EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEeccccccch
Confidence 4788999999964 3589999999999999999999999999999999999986 79999999999864 344
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh-----------hchHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN-----------ANGFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~-----------~~~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
..+|+.++|+||+|.+|..|++||+..... +.+.++.+ ...++...++...+||||||||++|||||
T Consensus 85 ~~~~~~i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~~qrv~laral 164 (261)
T PRK14263 85 VVVRRYIGMVFQQPNPFSMSIFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQQQRLCIARAI 164 (261)
T ss_pred HhhhhceEEEecCCccccccHHHHHHHHHhhcCchHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHHHHHHHHHHHH
Confidence 567889999999999999999999962211 11122211 11122344567789999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEe--------CCEEEEecChhHHh
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVS--------QGMIVEKGSHESLI 1220 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~--------~G~Ive~Gt~~eLl 1220 (1236)
+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|+ +|++++.|++++++
T Consensus 165 ~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i~~~g~~~~~~ 244 (261)
T PRK14263 165 ATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYLVEMGPTAQIF 244 (261)
T ss_pred HcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceEEEeCCHHHHH
Confidence 9999999999999999999999999999998777899999999999865 99999996 89999999999998
Q ss_pred hccC
Q 040099 1221 STKN 1224 (1236)
Q Consensus 1221 ~~~~ 1224 (1236)
+++.
T Consensus 245 ~~~~ 248 (261)
T PRK14263 245 QNPR 248 (261)
T ss_pred hCCC
Confidence 7543
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-39 Score=353.11 Aligned_cols=205 Identities=27% Similarity=0.436 Sum_probs=175.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ++.++
T Consensus 1 l~l~~v~~~~~~---~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~~----~~~~~ 73 (223)
T TIGR03740 1 LETKNLSKRFGK---QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRKD----LHKIG 73 (223)
T ss_pred CEEEeEEEEECC---EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEeccccc----cccEE
Confidence 478999999963 46999999999999999999999999999999999999999999999999875322 25799
Q ss_pred EEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 465 LVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 465 ~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
|++|++.+|. .|++||+.++.. ...++++.++++..++.+.. .....+||||||||++||||++.+
T Consensus 74 ~~~q~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----------~~~~~~LS~G~~~rv~laral~~~ 142 (223)
T TIGR03740 74 SLIESPPLYENLTARENLKVHTTLLGLPDSRIDEVLNIVDLTNTG-----------KKKAKQFSLGMKQRLGIAIALLNH 142 (223)
T ss_pred EEcCCCCccccCCHHHHHHHHHHHcCCCHHHHHHHHHHcCCcHHH-----------hhhHhhCCHHHHHHHHHHHHHhcC
Confidence 9999998886 599999986421 22345566666666555443 334458999999999999999999
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccc
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|++|||||||++||+.+.+.+.+.|+++. +++|+|++||+++.+. .||+|++|++|++++.|+.++
T Consensus 143 p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~~~~ 210 (223)
T TIGR03740 143 PKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGKINK 210 (223)
T ss_pred CCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecChhh
Confidence 99999999999999999999999999885 4789999999999986 499999999999999998654
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-39 Score=360.54 Aligned_cols=208 Identities=28% Similarity=0.441 Sum_probs=181.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC--------CcEEEECCeecccCCh
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS--------SGHITLDGVEIQKLQV 1082 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~--------~G~I~idG~di~~i~~ 1082 (1236)
++++|++++|+.+ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ +|+|.+||.++...+.
T Consensus 2 l~~~nl~~~~~~~---~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 2 LTADHLHVARRHR---AILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred eEEEEEEEEECCE---eEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 6899999999643 5899999999999999999999999999999999999998 9999999999988888
Q ss_pred HHHhcceEEEcCCCC-CChhhHHHHHHHHh-------h-----hchHHHh-h-hhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPV-LFSDTIRANIAEMA-------N-----ANGFISG-L-QEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~-LF~gTIreNL~~~a-------~-----~~~~i~~-l-p~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|+.++|+||++. +|..|++||+.... + ..+.+.. + .-|+++.++.....||||||||++|||
T Consensus 79 ~~~~~~~~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgG~~qrv~lar 158 (272)
T PRK13547 79 PRLARLRAVLPQAAQPAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATALVGRDVTTLSGGELARVQFAR 158 (272)
T ss_pred HHHHhhcEEecccCCCCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhhhcCCcccCCHHHHHHHHHHH
Confidence 888889999999985 57889999985210 0 0011111 1 126777778888999999999999999
Q ss_pred HHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecC
Q 040099 1148 AIV---------KEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1148 ALl---------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt 1215 (1236)
||+ .+|++|||||||++||+.+...+.+.|+++.+ ++|+|+|||+++.+. .||+|++|++|+|++.|+
T Consensus 159 al~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~i~~~g~ 238 (272)
T PRK13547 159 VLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGAIVAHGA 238 (272)
T ss_pred HHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEEecC
Confidence 999 59999999999999999999999999998753 689999999999996 499999999999999999
Q ss_pred hhHHhh
Q 040099 1216 HESLIS 1221 (1236)
Q Consensus 1216 ~~eLl~ 1221 (1236)
+++++.
T Consensus 239 ~~~~~~ 244 (272)
T PRK13547 239 PADVLT 244 (272)
T ss_pred HHHHcC
Confidence 999865
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-39 Score=357.77 Aligned_cols=212 Identities=29% Similarity=0.419 Sum_probs=179.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--C---CCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--P---SSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~---~~G~I~idG~di~~--i~~ 1082 (1236)
-|+++||+++|+. .++|+|+||+|++||++||+|+||||||||+++|.|+++ | ++|+|.+||.++.. .+.
T Consensus 5 ~l~~~~l~~~~~~---~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~~ 81 (252)
T PRK14255 5 IITSSDVHLFYGK---FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNEDV 81 (252)
T ss_pred eEEEEeEEEEECC---eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccccH
Confidence 4899999999974 358999999999999999999999999999999999975 4 58999999999864 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhhhc---------hHH----Hh--hhhchhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMANAN---------GFI----SG--LQEGYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~---------~~i----~~--lp~Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
..+|++++|+||+|.+|..|+++|+.-..... +.+ +. +.+++.........+||||||||++|||
T Consensus 82 ~~~~~~i~~~~q~~~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~qrv~lar 161 (252)
T PRK14255 82 VQLRKQVGMVFQQPNPFPFSIYENVIYGLRLAGVKDKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQQRVCIAR 161 (252)
T ss_pred HHhcCeEEEEECCCccCCCcHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHHHHHHHHH
Confidence 57788999999999999999999995211110 111 11 1112233455677899999999999999
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
||+++|++|||||||++||+.+...+.+.|++..+++|+|+|||+++.+.. ||+|++|++|++++.|++.+....+.
T Consensus 162 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~~~~~~~~~~ 239 (252)
T PRK14255 162 VLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFADTKQMFLNPK 239 (252)
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcCCC
Confidence 999999999999999999999999999999988767899999999999965 99999999999999999999987543
|
|
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-39 Score=360.52 Aligned_cols=216 Identities=32% Similarity=0.489 Sum_probs=183.4
Q ss_pred EEEeEEEEECCCC------CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh--
Q 040099 1011 VQFLRVSFKYPTR------PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-- 1082 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~------~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-- 1082 (1236)
|+++||+++|+.. .+.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+++.
T Consensus 4 l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~~~ 83 (268)
T PRK10419 4 LNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNRAQ 83 (268)
T ss_pred EEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccChhH
Confidence 7899999999731 02469999999999999999999999999999999999999999999999999987765
Q ss_pred -HHHhcceEEEcCCCC--CC-hhhHHHHHHHH-------------hhhchHHHhhhhchhh-hhcCCCCCCChhHHHHHH
Q 040099 1083 -KWLRQQMGVVSQEPV--LF-SDTIRANIAEM-------------ANANGFISGLQEGYDT-LVGERGVQLSGGQKQRVA 1144 (1236)
Q Consensus 1083 -~~lR~~i~~V~Qdp~--LF-~gTIreNL~~~-------------a~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRla 1144 (1236)
..+|+.++|+||++. ++ ..|+++|+... ..+.+.+..+ |+++ ..+.....||||||||++
T Consensus 84 ~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LS~Ge~qrl~ 161 (268)
T PRK10419 84 RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLSLDKAERLARASEMLRAV--DLDDSVLDKRPPQLSGGQLQRVC 161 (268)
T ss_pred HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhccCCHHHHHHHHHHHHHHc--CCChhHhhCCCccCChHHHHHHH
Confidence 357889999999983 43 46999997421 1223333332 5653 566778899999999999
Q ss_pred HHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhh
Q 040099 1145 IARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1145 LARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|||||+.+|+||||||||++||+++...+.+.|++..+ ++|+|++||+++.+.. ||+|++|++|++++.|+++++.+
T Consensus 162 laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g~~~~~~~ 241 (268)
T PRK10419 162 LARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQPVGDKLT 241 (268)
T ss_pred HHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeCChhhccC
Confidence 99999999999999999999999999999999998753 7899999999999975 99999999999999999999986
Q ss_pred ccCcccHH
Q 040099 1222 TKNGIYTS 1229 (1236)
Q Consensus 1222 ~~~g~y~~ 1229 (1236)
. ++.|..
T Consensus 242 ~-~~~~~~ 248 (268)
T PRK10419 242 F-SSPAGR 248 (268)
T ss_pred C-CCHHHH
Confidence 4 555543
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-39 Score=337.09 Aligned_cols=171 Identities=51% Similarity=0.881 Sum_probs=160.6
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++|++++|++. ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+...++++++
T Consensus 1 l~~~~l~~~~~~~-~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (171)
T cd03228 1 IEFKNVSFSYPGR-PKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDLESLRKNIA 79 (171)
T ss_pred CEEEEEEEEcCCC-CcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCHHHHHhhEE
Confidence 4789999999742 236999999999999999999999999999999999999999999999999998887777888999
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
|++|++.+|+.|++||+ ||||||||++||||++.+|++
T Consensus 80 ~~~~~~~~~~~t~~e~l------------------------------------------LS~G~~~rl~la~al~~~p~l 117 (171)
T cd03228 80 YVPQDPFLFSGTIRENI------------------------------------------LSGGQRQRIAIARALLRDPPI 117 (171)
T ss_pred EEcCCchhccchHHHHh------------------------------------------hCHHHHHHHHHHHHHhcCCCE
Confidence 99999999999999997 999999999999999999999
Q ss_pred EEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 545 LLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 545 lilDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
|||||||++||+.+...+.+.|+++.+++|+|++||+++.+..||++++|++|+
T Consensus 118 lllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~d~~~~l~~g~ 171 (171)
T cd03228 118 LILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRDADRIIVLDDGR 171 (171)
T ss_pred EEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHhCCEEEEEcCCC
Confidence 999999999999999999999998877899999999999998899999999985
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-39 Score=351.44 Aligned_cols=227 Identities=31% Similarity=0.488 Sum_probs=193.2
Q ss_pred CCcEEEEeEEEECCCCCC--------CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC
Q 040099 382 RGDIELKDVNFSYPARPD--------EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE 453 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~--------~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~ 453 (1236)
+.-++.+||...||-+++ ..+.++|||++++||+++|||+||||||||-..|+|+.+++ |+|.++|+++..
T Consensus 274 ~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~~ 352 (534)
T COG4172 274 PVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDIDG 352 (534)
T ss_pred CceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCccccc
Confidence 345899999999974321 35899999999999999999999999999999999999877 999999999998
Q ss_pred CCHHH---HhcceEEEccCCC--CCc-hhHHHHHhcCC----CCCC----HHHHHHHHHHhccHHHHHhCCCCccccccC
Q 040099 454 FQLKW---IREKIGLVSQEPV--LLS-SSIRDNIAYGK----THAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGE 519 (1236)
Q Consensus 454 ~~~~~---~r~~i~~v~Q~~~--l~~-~ti~~ni~~g~----~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~ 519 (1236)
.+.+. +|+++-+|+|||+ |-+ .||.+-|.-|. |..+ ++++.+|++.++++.-. ...
T Consensus 353 ~~~~~mrplR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~~~ls~~eR~~rv~~aL~EVGLDp~~----------r~R 422 (534)
T COG4172 353 LSRKEMRPLRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPAT----------RNR 422 (534)
T ss_pred cChhhhhhhhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcCCCCCHHHHHHHHHHHHHHcCCChhH----------hhc
Confidence 87665 6789999999996 333 48888776652 3333 34566777777765432 334
Q ss_pred CCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEEC
Q 040099 520 HGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQ 596 (1236)
Q Consensus 520 ~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~ 596 (1236)
.+..+|||||||||||||++-+|++++||||||+||.....+|.+.|+++.+ +-+-++|||++..++. ||+|+||++
T Consensus 423 YPhEFSGGQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~ 502 (534)
T COG4172 423 YPHEFSGGQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRD 502 (534)
T ss_pred CCcccCcchhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeC
Confidence 4568999999999999999999999999999999999999999999998854 5699999999999987 999999999
Q ss_pred CEEEEEeCcccccccccchhhhh
Q 040099 597 GKIVEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 597 G~i~~~g~~~~l~~~~~~~y~~~ 619 (1236)
|+|||+|+.++++++|...|.+-
T Consensus 503 GkiVE~G~~~~if~~P~~~YT~~ 525 (534)
T COG4172 503 GKIVEQGPTEAVFANPQHEYTRA 525 (534)
T ss_pred CEEeeeCCHHHHhcCCCcHHHHH
Confidence 99999999999999998888764
|
|
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-38 Score=364.83 Aligned_cols=210 Identities=28% Similarity=0.490 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-----CCCcEEEECCeeccc--CCh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-----PSSGHITLDGVEIQK--LQV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-----~~~G~I~idG~di~~--i~~ 1082 (1236)
.|+++||+++|+++ ++|+++||+|++||++||+|+||||||||+++|.|+++ |++|+|.+||.++.. .+.
T Consensus 45 ~l~i~nl~~~~~~~---~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~~~ 121 (305)
T PRK14264 45 KLSVEDLDVYYGDD---HALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVNL 121 (305)
T ss_pred eEEEEEEEEEeCCe---eeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccccH
Confidence 58999999999753 58999999999999999999999999999999999986 689999999999865 345
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHHhh-------------------------hchHHH--hhhhchhhhhcCCCCCC
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEMAN-------------------------ANGFIS--GLQEGYDTLVGERGVQL 1135 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~-------------------------~~~~i~--~lp~Gldt~vge~G~~L 1135 (1236)
..+|++++||||++.+|++|++||+..... +.+.+. .+++++++.+...+.+|
T Consensus 122 ~~~~~~i~~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~L 201 (305)
T PRK14264 122 VELRKRVGMVFQSPNPFPKSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDDNALGL 201 (305)
T ss_pred HHHhhceEEEccCCccccccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcCccccC
Confidence 678899999999999999999999962110 011111 12334456667888999
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhh-cCEE-EEEeCCEEEEe
Q 040099 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLI-AVVSQGMIVEK 1213 (1236)
Q Consensus 1136 SGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~-aD~I-~Vl~~G~Ive~ 1213 (1236)
|||||||++|||||+++|+||||||||++||+.+...+.+.|+++.+++|+|+|||+++.+.. ||+| ++|++|++++.
T Consensus 202 SgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G~i~~~ 281 (305)
T PRK14264 202 SGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVEY 281 (305)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCCEEEEe
Confidence 999999999999999999999999999999999999999999998777899999999999865 9997 57799999999
Q ss_pred cChhHHhhc
Q 040099 1214 GSHESLIST 1222 (1236)
Q Consensus 1214 Gt~~eLl~~ 1222 (1236)
|+++++.+.
T Consensus 282 g~~~~~~~~ 290 (305)
T PRK14264 282 DDTDKIFEN 290 (305)
T ss_pred CCHHHHHhC
Confidence 999999765
|
|
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=350.73 Aligned_cols=204 Identities=32% Similarity=0.482 Sum_probs=169.8
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHHHhc
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKWIRE 461 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~ 461 (1236)
++ |++++|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++.+. +....++
T Consensus 3 ~~-~l~~~~~~---~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 3 CV-DIEKRLPD---FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred ee-eeeEecCC---eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 45 89999963 334 99999999 99999999999999999999999999999999999988643 2334678
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+++|++|++.+|. .|++||+.++......++. ...+.++++.+ |++......+.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~~~~~~t~~~~l~~~~~~~~~~~~-----~~~~~~~l~~~--~l~~~~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYALFPHLNVRENLAFGLKRKRNRED-----RISVDELLDLL--GLDHLLNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCccCCCCCHHHHHHHHHhhCCHHHH-----HHHHHHHHHHc--CCHhHhhcCcccCCHHHHHHHHHHHHHhc
Confidence 8999999999986 5999999876432221111 11123444444 55555667778999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEe
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g 603 (1236)
+|++|||||||++||+.+.+.+.+.|+++.+ ++|+|++||+++.+.. ||++++|++|+++++|
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 214 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYIG 214 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999998853 7899999999999864 9999999999998765
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() | |
| Query | 1236 | ||||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-101 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 0.0 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 1e-101 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 0.0 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 4e-92 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 1e-84 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-91 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 5e-84 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 3e-69 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-68 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 6e-68 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 1e-63 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 4e-61 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 6e-59 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 2e-54 | ||
| 3qf4_B | 598 | Crystal Structure Of A Heterodimeric Abc Transporte | 1e-53 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 9e-53 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 3e-46 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 1e-52 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 1e-52 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 1e-52 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 3e-52 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 3e-52 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 2e-51 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 2e-51 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 1e-50 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-49 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-49 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 5e-48 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 2e-48 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 8e-48 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 6e-48 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 2e-46 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-48 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 7e-45 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 2e-47 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 6e-37 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 1e-25 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 2e-18 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 9e-25 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 6e-21 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-24 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-20 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-23 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 7e-20 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 5e-21 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 3e-18 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-20 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 1e-16 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-20 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 1e-16 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 2e-19 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-18 | ||
| 3gd7_A | 390 | Crystal Structure Of Human Nbd2 Complexed With N6- | 1e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-17 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-12 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 5e-17 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-15 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 1e-16 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 5e-13 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 2e-16 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 4e-15 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 2e-16 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 4e-15 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 4e-16 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-13 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 4e-16 | ||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 2e-12 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-16 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 5e-13 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 7e-16 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 2e-14 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 7e-16 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-14 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 9e-16 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 1e-14 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-15 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-15 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 1e-15 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 9e-13 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 1e-15 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-15 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 4e-15 | ||
| 2bbt_A | 290 | Human Deltaf508 Nbd1 With Two Solublizing Mutations | 5e-15 | ||
| 2bbs_A | 290 | Human Deltaf508 Nbd1 With Three Solubilizing Mutati | 5e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-15 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 8e-11 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 8e-15 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 3e-14 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 1e-14 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 1e-14 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 2e-14 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-14 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 3e-11 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-14 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 3e-10 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 4e-14 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 7e-11 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 9e-14 | ||
| 2bbo_A | 291 | Human Nbd1 With Phe508 Length = 291 | 3e-13 | ||
| 1xmj_A | 290 | Crystal Structure Of Human Deltaf508 Human Nbd1 Dom | 2e-13 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 2e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-13 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 4e-12 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 2e-13 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 4e-13 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 2e-12 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 9e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 4e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 8e-11 | ||
| 1ji0_A | 240 | Crystal Structure Analysis Of The Abc Transporter F | 9e-09 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 1e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 2e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 5e-10 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-07 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 5e-10 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 1e-07 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 1e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 1e-09 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 4e-07 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 1e-09 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 2e-08 | ||
| 2zu0_C | 267 | Crystal Structure Of Sufc-Sufd Complex Involved In | 2e-08 | ||
| 2d3w_A | 248 | Crystal Structure Of Escherichia Coli Sufc, An Atpa | 3e-08 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 1e-07 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 3e-07 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 3e-07 | ||
| 2d2e_A | 250 | Crystal Structure Of Atypical Cytoplasmic Abc-Atpas | 4e-07 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 1e-06 | ||
| 3pih_A | 916 | T. Maritima Uvra In Complex With Fluorescein-Modifi | 2e-04 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 9e-06 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 1e-04 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 1e-05 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 5e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 1e-05 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 4e-05 | ||
| 2qi9_C | 249 | Abc-Transporter Btucd In Complex With Its Periplasm | 4e-05 | ||
| 1l7v_C | 249 | Bacterial Abc Transporter Involved In B12 Uptake Le | 6e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 7e-05 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 2e-04 | ||
| 4dbl_C | 249 | Crystal Structure Of E159q Mutant Of Btucdf Length | 7e-05 | ||
| 4fi3_C | 249 | Structure Of Vitamin B12 Transporter Btucd-F In A N | 9e-05 |
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|3QF4|B Chain B, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 598 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|3GD7|A Chain A, Crystal Structure Of Human Nbd2 Complexed With N6- Phenylethyl-Atp (P-Atp) Length = 390 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2BBT|A Chain A, Human Deltaf508 Nbd1 With Two Solublizing Mutations. Length = 290 | Back alignment and structure |
|
| >pdb|2BBS|A Chain A, Human Deltaf508 Nbd1 With Three Solubilizing Mutations Length = 290 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|2BBO|A Chain A, Human Nbd1 With Phe508 Length = 291 | Back alignment and structure |
|
| >pdb|1XMJ|A Chain A, Crystal Structure Of Human Deltaf508 Human Nbd1 Domain With Atp Length = 290 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|1JI0|A Chain A, Crystal Structure Analysis Of The Abc Transporter From Thermotoga Maritima Length = 240 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2ZU0|C Chain C, Crystal Structure Of Sufc-Sufd Complex Involved In The Iron- Sulfur Cluster Biosynthesis Length = 267 | Back alignment and structure |
|
| >pdb|2D3W|A Chain A, Crystal Structure Of Escherichia Coli Sufc, An Atpase Compenent Of The Suf Iron-Sulfur Cluster Assembly Machinery Length = 248 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|2D2E|A Chain A, Crystal Structure Of Atypical Cytoplasmic Abc-Atpase Sufc From Thermus Thermophilus Hb8 Length = 250 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|3PIH|A Chain A, T. Maritima Uvra In Complex With Fluorescein-Modified Dna Length = 916 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|2QI9|C Chain C, Abc-Transporter Btucd In Complex With Its Periplasmic Binding Protein Btuf Length = 249 | Back alignment and structure |
|
| >pdb|1L7V|C Chain C, Bacterial Abc Transporter Involved In B12 Uptake Length = 249 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|4DBL|C Chain C, Crystal Structure Of E159q Mutant Of Btucdf Length = 249 | Back alignment and structure |
|
| >pdb|4FI3|C Chain C, Structure Of Vitamin B12 Transporter Btucd-F In A Nucleotide-Bound State Length = 249 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| Query | 1236 | |||
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 0.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-163 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-161 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-159 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 1e-156 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-151 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 1e-148 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-149 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 1e-143 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-140 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 1e-132 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-131 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 1e-127 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-124 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 1e-119 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-118 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 1e-115 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-115 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 1e-110 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 3e-95 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 4e-95 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 4e-59 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 1e-57 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 3e-46 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 5e-37 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 6e-45 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 5e-36 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 2e-44 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 5e-35 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 2e-43 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 4e-32 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 3e-43 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 1e-36 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 1e-42 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 2e-33 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 3e-41 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 1e-30 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 7e-40 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 2e-32 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 1e-38 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 6e-36 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 6e-38 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 1e-32 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 5e-36 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 1e-25 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 9e-35 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 2e-25 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 5e-34 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-33 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 7e-29 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 2e-26 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-32 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 1e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-32 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-30 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 1e-27 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 3e-27 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 5e-32 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 1e-24 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 2e-31 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 4e-30 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 6e-28 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 5e-27 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 2e-31 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 4e-29 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 6e-28 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 5e-26 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 3e-30 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 1e-26 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 3e-30 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 1e-25 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-29 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 1e-25 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 1e-29 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 9e-25 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 3e-29 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 7e-28 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 7e-29 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 1e-26 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 4e-28 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 2e-20 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 2e-23 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 6e-18 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 3e-21 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 5e-16 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 5e-20 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 9e-16 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 8e-20 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 3e-16 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 6e-18 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 5e-15 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 3e-17 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 2e-10 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 7e-17 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 4e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 4e-16 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 8e-12 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 3e-09 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 1e-05 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 6e-05 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-12 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 3e-11 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 1e-10 | |
| 1vt4_I | 1221 | APAF-1 related killer DARK; drosophila apoptosome, | 7e-07 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 7e-12 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 1e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 3e-11 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 6e-11 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 6e-09 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 4e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-06 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 2e-06 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 3e-05 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 7e-04 |
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 1599 bits (4142), Expect = 0.0
Identities = 480/1243 (38%), Positives = 729/1243 (58%), Gaps = 54/1243 (4%)
Query: 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLA----- 99
+ + +A LD + MLVGT+AA +G+ +P + L+FGD+ DS +
Sbjct: 33 VSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMS 92
Query: 100 -----------IHGVLKVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETIL 148
+ + + + G + ++ QV+ W + RQ +IR + I+
Sbjct: 93 EADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIM 152
Query: 149 RQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLT 208
Q+I +FD + GE+ R++ D I + IG+K+G F Q A+F GGF+I F +GW LT
Sbjct: 153 NQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMFFQAMATFFGGFIIGFTRGWKLT 211
Query: 209 LTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASS 268
L +L+ P L ++ + K++ + ++ A + A V + + +IRTV +F G+++
Sbjct: 212 LVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKELE 271
Query: 269 IYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVI 328
YN L ++ + +++ + + +GA+ +I+++Y L WYG L++ K YS G V++V
Sbjct: 272 RYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVF 331
Query: 329 FGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELK 388
F VLIG+ S+GQASP + AFA + AA++ F+ I+ KP ID +G K D+I+G++E K
Sbjct: 332 FSVLIGAFSVGQASPNIEAFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFK 391
Query: 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448
+++FSYP+R + QIL G L + +G ALVG SG GKST + L+QR YDP G V IDG
Sbjct: 392 NIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDG 451
Query: 449 VNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKN 508
+++ ++++RE IG+VSQEPVL +++I +NI YG+ T +EI+ A + ANA FI
Sbjct: 452 QDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFIMK 511
Query: 509 LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR 568
LP DT VGE G QLSGGQKQR+AIARA++++P+ILLLDEATSALD+ES +VQ ALD+
Sbjct: 512 LPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDK 571
Query: 569 VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKE 628
RTT++++HRLS +RNA++IA G IVE+G H EL+ G Y +L+ Q E
Sbjct: 572 AREGRTTIVIAHRLSTVRNADVIAGFDGGVIVEQGNHDELMREK-GIYFKLVMTQTAGNE 630
Query: 629 SEKSAVNNSDSD----------------NQPFASPKITTPKQSETESDFPASEKAKMPPD 672
E D + ++ K + + P
Sbjct: 631 IELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPP 690
Query: 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEP--KEELMRHSKH 730
S R+ LNS E P ++G ++ NG + P F V+ + +V E ++S
Sbjct: 691 ASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNL 750
Query: 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAI 790
++L+F+ LG S +T L + F AG L KR+R M F+ ++ +V WFD+ ++TGA+
Sbjct: 751 FSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGAL 810
Query: 791 GARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850
RL++DAA V+ G L+++ QN A G++I+ WQL LL+LAI P++ I G +
Sbjct: 811 TTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVV 870
Query: 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQ 910
+MK + G + + E + ++A++A+ + RTV S E+K +Y + + P + +++
Sbjct: 871 EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKK 930
Query: 911 GLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSL 970
+ GI F + + +YA F GA LV + TF V VF A+ A+ + Q SS
Sbjct: 931 AHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSF 990
Query: 971 ASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFR 1030
A D +KA SA+ + +I++ +IDS G + G VQF V F YPTRP I V +
Sbjct: 991 APDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQ 1050
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
L L + G+T+ALVG SG GKSTV+ LL+RFYDP +G + LDG EI++L V+WLR Q+G
Sbjct: 1051 GLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLG 1110
Query: 1091 VVSQEPVLFSDTIRANI-----------------AEMANANGFISGLQEGYDTLVGERGV 1133
+VSQEP+LF +I NI A+ AN + FI L + Y+T VG++G
Sbjct: 1111 IVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT 1170
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
QLSGGQKQR+AIARA+V++P ILLLDEATSALD ESE+VVQ+ALD+ RT +V+AHRL
Sbjct: 1171 QLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
Query: 1194 STIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
STI+NA LI V+ G + E G+H+ L++ + GIY S++
Sbjct: 1231 STIQNADLIVVIQNGKVKEHGTHQQLLA-QKGIYFSMVSVQAG 1272
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 695 bits (1796), Expect = 0.0
Identities = 220/621 (35%), Positives = 345/621 (55%), Gaps = 37/621 (5%)
Query: 646 SPKITTPKQSETESDFPASEKAKMPPDVSLSRL-AYLNSPEVPALLLGAIASMTNGIIIP 704
K K EK + P VS+ + Y + +L+G +A++ +G+ +P
Sbjct: 6 DLKGRADKNFSKMGKKSKKEKKEKKPAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALP 65
Query: 705 IFGVMLAAMVNTLNE------------------PKEELMRHSKHWALMFVALGAASLLTS 746
+ ++ M ++ +L +A + +GA L+ +
Sbjct: 66 LMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTYAYYYTGIGAGVLIVA 125
Query: 747 PLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVG 806
+ + + +A + I +IR F ++ E+GWFD H G + RL+ D + + +G
Sbjct: 126 YIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDV--HDVGELNTRLTDDVSKINEGIG 183
Query: 807 DTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMY 866
D + + Q AT G +I F W+L L++LAI P+LG++ I K + F+ + Y
Sbjct: 184 DKIGMFFQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAY 243
Query: 867 EEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFF 926
+A VA + +++IRTV +F ++K ++ Y E + GI++ + + I G +F +
Sbjct: 244 AKAGAVAEEVLAAIRTVIAFGGQKKELERYNNNLEEAKRLGIKKAITANISMGAAFLLIY 303
Query: 927 MAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFG 986
+YA+ F+ G LV K+ + +V VFF++ + A + Q S + A+ +A VF
Sbjct: 304 ASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIEAFANARGAAYEVFK 363
Query: 987 LIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVG 1046
+ID IDS +G +N+ G ++F + F YP+R +++ + L L + G+T+ALVG
Sbjct: 364 IIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVG 423
Query: 1047 ESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106
SG GKST + L+QR YDP G +++DG +I+ + V++LR+ +GVVSQEPVLF+ TI N
Sbjct: 424 NSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAEN 483
Query: 1107 I---------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151
I + ANA FI L +DTLVGERG QLSGGQKQR+AIARA+V+
Sbjct: 484 IRYGREDVTMDEIEKAVKEANAYDFIMKLPHQFDTLVGERGAQLSGGQKQRIAIARALVR 543
Query: 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIV 1211
PKILLLDEATSALD ESE VVQ ALD+ RTT+V+AHRLST++NA +IA G+IV
Sbjct: 544 NPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRNADVIAGFDGGVIV 603
Query: 1212 EKGSHESLISTKNGIYTSLIE 1232
E+G+H+ L+ + GIY L+
Sbjct: 604 EQGNHDELMR-EKGIYFKLVM 623
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 682 bits (1762), Expect = 0.0
Identities = 214/643 (33%), Positives = 342/643 (53%), Gaps = 9/643 (1%)
Query: 2 EHDDNNLDTSTGQAPDQSTGNFTDKRCDHERGMNINIITVNGRIPFHKLLSFADLL---- 57
+ DN +S T K + + T SF +L
Sbjct: 642 DEIDNLDMSSKDSGSSLIRRRSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKLNS 701
Query: 58 -DSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALG 116
+ +VG A NG P +++F ++ S F+ L +
Sbjct: 702 TEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGII 761
Query: 117 AGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEIN-TGEVVGRISGDTLLI 175
+ + F Q + GE R+R +++LRQD+++FD N TG + R++ D +
Sbjct: 762 SFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQV 821
Query: 176 QDAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQ 235
+ A G ++ Q A+ G +I+ GW LTL +L+ +P + IAGVV +K++ A +
Sbjct: 822 KGATGSRLAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALK 881
Query: 236 KQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGAS 295
+ + + + I + RTV S T EQ+ ++Y + L Y++++++ G+ +
Sbjct: 882 DKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAMKKAHVFGITFSFT 941
Query: 296 VFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAA 355
+++ +Y +GA L+ ++ + +V+ V ++ G+M++GQ S +A +A
Sbjct: 942 QAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSA 1001
Query: 356 FKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTI 415
I + PEID G K + + G+++ V F+YP RP +L G L + G
Sbjct: 1002 SHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQT 1061
Query: 416 AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS 475
ALVG+SG GKSTV+ L++RFYDP AG V +DG +K+ ++W+R ++G+VSQEP+L
Sbjct: 1062 LALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDC 1121
Query: 476 SIRDNIAYGK--THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533
SI +NIAYG + EEI AA+ AN FI +LP +T VG+ G QLSGGQKQR+A
Sbjct: 1122 SIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIA 1181
Query: 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAV 593
IARA+++ P ILLLDEATSALD+ES ++VQEALD+ RT ++++HRLS I+NA++I V
Sbjct: 1182 IARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVV 1241
Query: 594 IQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNN 636
IQ GK+ E GTH +LL G Y ++ +Q K S ++
Sbjct: 1242 IQNGKVKEHGTHQQLLAQK-GIYFSMVSVQAGAKRSYVHHHHH 1283
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 498 bits (1285), Expect = e-163
Identities = 182/565 (32%), Positives = 295/565 (52%), Gaps = 13/565 (2%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMDS-IGQNATKTLAIHGVLKVSKKFVYLALGAGV 119
++V IA N F+ L L+D G+ L ++ + L + G+
Sbjct: 26 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPLV-----VIGLMILRGI 80
Query: 120 ASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAI 179
S+ C + +R ++ +AFFDK+ +TG ++ RI+ D+ + +
Sbjct: 81 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSS 139
Query: 180 GEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAA 239
+ ++ GAS IG F++ F+ W L++ ++ P + IA V+ K +++ Q
Sbjct: 140 SGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNT 199
Query: 240 DSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFII 299
T Q + + V F G++ + ++K K ++ A+ + I
Sbjct: 200 MGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIA 259
Query: 300 FSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFF 359
A ++ + + + G + V ++ L + + F G AA F
Sbjct: 260 SLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLF 319
Query: 360 EAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALV 419
++ + E D + +D GD+E ++V F+YP R + L L IP G ALV
Sbjct: 320 AILDSEQEKD---EGKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALV 375
Query: 420 GTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479
G SGSGKST+ SLI RFYD G +L+DG +L+E+ L +R ++ LVSQ L + ++ +
Sbjct: 376 GRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVAN 435
Query: 480 NIAYGKTHA-TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538
NIAY +T ++E+I+ AA A A FI + GLDT +GE+G+ LSGGQ+QR+AIARA+
Sbjct: 436 NIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARAL 495
Query: 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598
++D IL+LDEATSALD+ES R +Q ALD + NRT+++++HRLS I A+ I V++ G
Sbjct: 496 LRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGI 555
Query: 599 IVEKGTHSELLENPYGAYNRLIRLQ 623
IVE+GTHSELL G Y +L ++Q
Sbjct: 556 IVERGTHSELLAQH-GVYAQLHKMQ 579
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 492 bits (1270), Expect = e-161
Identities = 178/573 (31%), Positives = 299/573 (52%), Gaps = 25/573 (4%)
Query: 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWAL 733
+ RL +P L++ IA + N +L +++ + + L
Sbjct: 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVL--LWMPL 69
Query: 734 MFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGAR 793
+ + L +TS +S YC + K++ +R F ++ M V +FD+ STG + +R
Sbjct: 70 VVIGLMILRGITSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSR 127
Query: 794 LSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK 853
++ D+ V S L +V+ A+ + ++ F WQL+++++ + P++ I + K
Sbjct: 128 ITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSK 187
Query: 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913
+ S N +N + + A + + V F +E K + K G++
Sbjct: 188 RFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 247
Query: 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASD 973
S I + +A A Y + T + VF ++ + +++ +
Sbjct: 248 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQ 307
Query: 974 ASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLC 1033
+ ++ ++F ++D + D + R ++ G+++F V+F YP R + R++
Sbjct: 308 FQRGMAACQTLFAILDSEQEKDEGK---RVIDRATGDLEFRNVTFTYPGR-EVPALRNIN 363
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
L IP GKT+ALVG SGSGKST+ SL+ RFYD GHI +DG ++++ + LR Q+ +VS
Sbjct: 364 LKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLASLRNQVALVS 423
Query: 1094 QEPVLFSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSG 1137
Q LF+DT+ NI A MA A FI+ + G DT++GE GV LSG
Sbjct: 424 QNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSG 483
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK 1197
GQ+QR+AIARA++++ IL+LDEATSALD ESER +Q ALD++ +RT+LV+AHRLSTI+
Sbjct: 484 GQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE 543
Query: 1198 NAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
A I VV G+IVE+G+H L++ ++G+Y L
Sbjct: 544 QADEIVVVEDGIIVERGTHSELLA-QHGVYAQL 575
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 487 bits (1255), Expect = e-159
Identities = 173/565 (30%), Positives = 289/565 (51%), Gaps = 13/565 (2%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMDS-IGQNATKTLAIHGVLKVSKKFVYLALGAGV 119
++V TIA N ++ L L+D G + L I + + L G+
Sbjct: 26 GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFLRILPFM-----ILGLMFVRGL 80
Query: 120 ASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAI 179
+ F C ++R + + FFD+E +TG ++ RI+ D+ + A
Sbjct: 81 SGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGAT 139
Query: 180 GEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAA 239
+ ++ GAS IG + F+ W L+L ++ P + A + K ++ Q A
Sbjct: 140 SRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTA 199
Query: 240 DSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFII 299
+ Q + + V S+ G++ ++K + +++ A + I
Sbjct: 200 MGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSAQSIADPVIQMIA 259
Query: 300 FSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFF 359
A ++ + + + G V + L + S F G AA F
Sbjct: 260 SLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLF 319
Query: 360 EAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALV 419
++ + E D + + + G++++KDV F+Y + ++ L+ IP G ALV
Sbjct: 320 GLMDLETERDN---GKYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALV 375
Query: 420 GTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479
G SGSGKST+ +L RFYD +G + +DG ++++++L +R LVSQ L + +I +
Sbjct: 376 GRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIAN 435
Query: 480 NIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538
NIAY + T+E+I+ AA A+A FI+N+PQGLDT +GE+G LSGGQ+QRVAIARA+
Sbjct: 436 NIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQRQRVAIARAL 495
Query: 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598
++D +L+LDEATSALD+ES R +Q ALD + N+T ++++HRLS I A+ I V+ +G+
Sbjct: 496 LRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGE 555
Query: 599 IVEKGTHSELLENPYGAYNRLIRLQ 623
I+E+G H++LL GAY +L R+Q
Sbjct: 556 IIERGRHADLLAQD-GAYAQLHRIQ 579
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 480 bits (1238), Expect = e-156
Identities = 170/573 (29%), Positives = 280/573 (48%), Gaps = 25/573 (4%)
Query: 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWAL 733
+ RL L++ IA + N +L +++ E +
Sbjct: 12 TFKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAESNFL--RILPF 69
Query: 734 MFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGAR 793
M + L L+ S YC + ++ ++R F ++M V +FD+ STG + +R
Sbjct: 70 MILGLMFVRGLSGFASSYCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQ--ESTGGLLSR 127
Query: 794 LSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMK 853
++ D+ V L +V+ A+ + L + F WQL+L+++ + P++ K
Sbjct: 128 ITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQLSLVLIVVAPVVAFAISFVSK 187
Query: 854 SMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913
+ S N + + A + + V S+ +E K + K + ++
Sbjct: 188 RFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247
Query: 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASD 973
I + +A ++ + + T VF A+ + +S+ S+
Sbjct: 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSE 307
Query: 974 ASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLC 1033
+ ++ ++FGL+D ++ D+ + E V GEV V+F Y + +
Sbjct: 308 FQRGMAACQTLFGLMDLETERDNGK---YEAERVNGEVDVKDVTFTYQGKEK-PALSHVS 363
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
+IP GKT+ALVG SGSGKST+ +L RFYD SG I LDG +++ ++ LR+ +VS
Sbjct: 364 FSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKLTNLRRHFALVS 423
Query: 1094 QEPVLFSDTIRANI----------------AEMANANGFISGLQEGYDTLVGERGVQLSG 1137
Q LF+DTI NI A A+A FI + +G DT++GE G LSG
Sbjct: 424 QNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483
Query: 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK 1197
GQ+QRVAIARA++++ +L+LDEATSALD ESER +Q ALD++ ++T LV+AHRLSTI+
Sbjct: 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE 543
Query: 1198 NAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
A I VV +G I+E+G H L++ ++G Y L
Sbjct: 544 QADEILVVDEGEIIERGRHADLLA-QDGAYAQL 575
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 466 bits (1202), Expect = e-151
Identities = 171/566 (30%), Positives = 264/566 (46%), Gaps = 7/566 (1%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMDSI---GQNATKTLAIHGVLKVSKKFVYLALGA 117
+ I + LL +D + T H + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 118 GVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQD 177
F + T + IR + F+ G+V+ R+ D +D
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKD 133
Query: 178 AIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQ 237
I + + I I FF LTL L P ++ V + L ++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 238 AADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVF 297
A + + + + I V SF E + ++K +++ A
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 298 IIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFK 357
+ + + GA L + + G + + + + + L + + A+ +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 358 FFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAA 417
F+ I+ +I V + ++ +G I++ V+F Y + IL L I G A
Sbjct: 314 VFQLIDEDYDIKNG-VGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVA 371
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477
VG SG GKST+I+LI RFYD +G++LIDG N+K+F +R +IGLV Q+ +L S ++
Sbjct: 372 FVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTV 431
Query: 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537
++NI G+ AT EE+ AA+ ANA FI NLPQG DT VGE G++LSGGQKQR++IAR
Sbjct: 432 KENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 491
Query: 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQG 597
+ +P IL+LDEATSALD ES ++QEALD + +RTT+IV+HRLS I +A+ I VI+ G
Sbjct: 492 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENG 551
Query: 598 KIVEKGTHSELLENPYGAYNRLIRLQ 623
IVE GTH EL+ GAY L +Q
Sbjct: 552 HIVETGTHRELIAKQ-GAYEHLYSIQ 576
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 458 bits (1181), Expect = e-148
Identities = 171/577 (29%), Positives = 273/577 (47%), Gaps = 27/577 (4%)
Query: 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALM 734
+ R P + I + I + +++ ++ + H +
Sbjct: 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTI 61
Query: 735 FVALG--AASLLTSPLS---MYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGA 789
+ + ++ P+ Y K++ IR + + + ++ ++ G
Sbjct: 62 AIGIALFIFVIVRPPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQ 119
Query: 790 IGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGH 849
+ +R+ +D + + L + + T ++ L I F +L L L IFP +T +
Sbjct: 120 VISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVY 179
Query: 850 IQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909
+ ++ + E + V I V SF E+ K + KK + ++
Sbjct: 180 VFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239
Query: 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIG-ISQTS 968
+ F + + VGA L T + F G + +
Sbjct: 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLA-AFVGYLELLFGPLRRLV 298
Query: 969 SLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEV 1028
+ + +++ +S VF LID+ I + + +E G + VSF+Y +
Sbjct: 299 ASFTTLTQSFASMDRVFQLIDEDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPI 356
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088
+D+ L+I G+T+A VG SG GKST+I+L+ RFYD +SG I +DG I+ LR Q
Sbjct: 357 LKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGSLRNQ 416
Query: 1089 MGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERGV 1133
+G+V Q+ +LFSDT++ NI A+MANA+ FI L +GYDT VGERGV
Sbjct: 417 IGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGV 476
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
+LSGGQKQR++IAR + P IL+LDEATSALD+ESE ++Q+ALD + DRTTL+VAHRL
Sbjct: 477 KLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536
Query: 1194 STIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
STI +A I V+ G IVE G+H LI+ K G Y L
Sbjct: 537 STITHADKIVVIENGHIVETGTHRELIA-KQGAYEHL 572
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 448 bits (1154), Expect = e-149
Identities = 106/265 (40%), Positives = 160/265 (60%), Gaps = 4/265 (1%)
Query: 375 GKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434
+++G ++ +DV+F+YP P+ Q+L G + G + ALVG +GSGKSTV +L+Q
Sbjct: 7 SLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQ 66
Query: 435 RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT-HATKEEI 493
Y P G+VL+DG L ++ ++ ++ V QEP+L S R+NIAYG T T EEI
Sbjct: 67 NLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEI 126
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A A + A FI PQG DT VGE G QLSGGQ+Q VA+ARA+I+ PR+L+LD ATSA
Sbjct: 127 TAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLILDNATSA 186
Query: 554 LDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
LD+ + VQ L +RT ++++ +LSL A+ I +++G + E+GTH +L+E
Sbjct: 187 LDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER 246
Query: 612 PYGAYNRLIRLQETCKESEKSAVNN 636
G Y ++ ++ ++
Sbjct: 247 G-GCYRSMVEALAAPSDAAAHHHHH 270
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 433 bits (1116), Expect = e-143
Identities = 103/261 (39%), Positives = 149/261 (57%), Gaps = 20/261 (7%)
Query: 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS 1053
+ N+ G V+F VSF YP P+++V + L T+ PGK ALVG +GSGKS
Sbjct: 1 MSPLS-GSLAPLNMKGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKS 59
Query: 1054 TVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI------ 1107
TV +LLQ Y P+ G + LDG + + +L Q+ V QEP+LF + R NI
Sbjct: 60 TVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHTQVAAVGQEPLLFGRSFRENIAYGLTR 119
Query: 1108 ----------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157
A + A+ FISG +GYDT VGE G QLSGGQ+Q VA+ARA++++P++L+
Sbjct: 120 TPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIRKPRLLI 179
Query: 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215
LD ATSALD ++ VQ L + RT L++ +LS + AH I + +G + E+G+
Sbjct: 180 LDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGT 239
Query: 1216 HESLISTKNGIYTSLIEPHTT 1236
H L+ + G Y S++E
Sbjct: 240 HLQLME-RGGCYRSMVEALAA 259
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 424 bits (1092), Expect = e-140
Identities = 110/244 (45%), Positives = 157/244 (64%), Gaps = 1/244 (0%)
Query: 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439
DI +++ F Y IL+ L I G + +VG SGSGKST+ LIQRFY P
Sbjct: 3 HHHHDITFRNIRFRYKPDSPV-ILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIP 61
Query: 440 QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEA 499
+ G+VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+ + E++ AA+
Sbjct: 62 ENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKL 121
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
A A FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES
Sbjct: 122 AGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESE 181
Query: 560 RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
++ + ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L
Sbjct: 182 HVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYL 241
Query: 620 IRLQ 623
+LQ
Sbjct: 242 YQLQ 245
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 403 bits (1037), Expect = e-132
Identities = 105/243 (43%), Positives = 155/243 (63%), Gaps = 16/243 (6%)
Query: 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064
+ ++ F + F+Y + ++ L+I G+ I +VG SGSGKST+ L+QRFY
Sbjct: 2 HHHHHDITFRNIRFRYKPDSP-VILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYI 60
Query: 1065 PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------AE 1109
P +G + +DG ++ WLR+Q+GVV Q+ VL + +I NI A+
Sbjct: 61 PENGQVLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAK 120
Query: 1110 MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+A A+ FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ES
Sbjct: 121 LAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYES 180
Query: 1170 ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229
E V+ + ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+
Sbjct: 181 EHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSY 240
Query: 1230 LIE 1232
L +
Sbjct: 241 LYQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 399 bits (1027), Expect = e-131
Identities = 103/245 (42%), Positives = 158/245 (64%), Gaps = 4/245 (1%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + V+F+Y QIL +I A G SG GKST+ SL++RFY P AGE+
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANAS 503
IDG + L+ R +IG VSQ+ +++ +IR+N+ YG + T E++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
F++N+P L+T VGE G+++SGGQ+QR+AIARA +++P+IL+LDEAT++LDSES MVQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ALD +M RTT++++HRLS I +A+ I I++G+I G H+EL+ Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSEQ 238
Query: 624 ETCKE 628
T +
Sbjct: 239 LTVGQ 243
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 389 bits (1002), Expect = e-127
Identities = 99/238 (41%), Positives = 142/238 (59%), Gaps = 19/238 (7%)
Query: 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070
+ V F Y ++ RD+ P IA G SG GKST+ SLL+RFY P++G I
Sbjct: 2 LSARHVDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 1071 TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----------------AEMANAN 1114
T+DG I + ++ R Q+G VSQ+ + + TIR N+ ++A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
F+ + + +T VGERGV++SGGQ+QR+AIARA ++ PKIL+LDEAT++LD ESE +VQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 1175 DALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
ALD +M RTTLV+AHRLSTI +A I + +G I G H L++ + +Y +
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 381 bits (980), Expect = e-124
Identities = 110/255 (43%), Positives = 165/255 (64%), Gaps = 2/255 (0%)
Query: 374 NGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
+IE DVNFSYP + + + L IP+GT ALVG +GSGKST+ L+
Sbjct: 7 LTSHEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLL 66
Query: 434 QRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEI 493
RFYD + G++ I G N+ ++ IR IG+V Q+ +L + +I+ NI YGK AT EE+
Sbjct: 67 YRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLDATDEEV 125
Query: 494 QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
A ++A FI+ LP+ DT VG G++LSGG++QR+AIAR ++KDP+I++ DEATS+
Sbjct: 126 IKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIFDEATSS 185
Query: 554 LDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPY 613
LDS++ + Q+A++ + NRT +I++HRLS I +A I ++ +GKIVEKGTH +LL+
Sbjct: 186 LDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKLN- 244
Query: 614 GAYNRLIRLQETCKE 628
G Y + +Q +
Sbjct: 245 GEYAEMWNMQSGGND 259
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 368 bits (948), Expect = e-119
Identities = 96/252 (38%), Positives = 153/252 (60%), Gaps = 18/252 (7%)
Query: 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKS 1053
++S T + ++F V+F YP + + + + IP G T ALVG +GSGKS
Sbjct: 2 LESFSLTS-HEKKFGVNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKS 60
Query: 1054 TVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI------ 1107
T+ LL RFYD G I + G + K +R +G+V Q+ +LF++TI+ NI
Sbjct: 61 TIAKLLYRFYDAE-GDIKIGGKNVNKYNRNSIRSIIGIVPQDTILFNETIKYNILYGKLD 119
Query: 1108 ---------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158
+ A FI L + +DT+VG +G++LSGG++QR+AIAR ++K+PKI++
Sbjct: 120 ATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDPKIVIF 179
Query: 1159 DEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHES 1218
DEATS+LD ++E + Q A++ + +RT +++AHRLSTI +A I ++++G IVEKG+H+
Sbjct: 180 DEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKD 239
Query: 1219 LISTKNGIYTSL 1230
L+ NG Y +
Sbjct: 240 LLK-LNGEYAEM 250
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 378 bits (972), Expect = e-118
Identities = 150/564 (26%), Positives = 289/564 (51%), Gaps = 13/564 (2%)
Query: 60 VLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGV 119
+++ V ++ G+ P+ L G +D + + + + +
Sbjct: 40 IMVFVFVTVSSILGVLSPY---LIGKTIDVV----FVPRRFDLLPRYMLILGTIYALTSL 92
Query: 120 ASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAI 179
+ Q + + R+R E + R + FFD+ G+++ R+ D I + +
Sbjct: 93 LFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVL 151
Query: 180 GEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAA 239
G + +F + G ++ F +L+L LS +P V+ ++ + Q
Sbjct: 152 GNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRV 211
Query: 240 DSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFII 299
++ + I + + FT E++ +++ K + + +G+ +
Sbjct: 212 LGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQIFSGVLPPLMNMVN 271
Query: 300 FSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFF 359
+ L +G L L+ + G + + I + L + S + A+A + F
Sbjct: 272 NLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIF 331
Query: 360 EAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALV 419
E ++ + E D + +L ++RG+IE K+V FSY + +L I G ALV
Sbjct: 332 EILDLEEEKD--DPDAVELREVRGEIEFKNVWFSY--DKKKPVLKDITFHIKPGQKVALV 387
Query: 420 GTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479
G +GSGK+T+++L+ RFYD G++L+DG+++++ + +R IG+V Q+ +L S+++++
Sbjct: 388 GPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKE 447
Query: 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539
N+ YG AT EEI+ AA+ ++ HFIK+LP+G +T + ++G LS GQ+Q +AI RA +
Sbjct: 448 NLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQRQLLAITRAFL 507
Query: 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKI 599
+P+IL+LDEATS +D+++ + +Q A+ ++M +T++I++HRL+ I+NA++I V++ G+I
Sbjct: 508 ANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEI 567
Query: 600 VEKGTHSELLENPYGAYNRLIRLQ 623
VE G H EL++ G Y L Q
Sbjct: 568 VEMGKHDELIQKR-GFYYELFTSQ 590
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 598 | Back alignment and structure |
|---|
Score = 372 bits (957), Expect = e-115
Identities = 167/577 (28%), Positives = 288/577 (49%), Gaps = 34/577 (5%)
Query: 674 SLSRLAYLNSPEVPAL---LLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKH 730
+L RL P L + S G++ P + ++ + P+
Sbjct: 24 TLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYL---IGKTIDVVFVPRR--FDLLPR 78
Query: 731 WALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAI 790
+ L+ + A + L L ++ R+R FEK+ + VG+FD G I
Sbjct: 79 YMLILGTIYALTSLLFWLQGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDI 136
Query: 791 GARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPL-LGITGH 849
+R+ +D + +++G+++ T +++ F+ L+L+ L+I PL + IT
Sbjct: 137 ISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVILSLVTLSIVPLTVLITQI 196
Query: 850 IQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909
+ ++ K F N + + + + +S + + F EEK M+ + + E K G +
Sbjct: 197 VSSQTRKYFYENQRVLGQLNGII-EEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255
Query: 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIG-ISQTS 968
+ SG+ L + +A+ G L T + F S +++ S
Sbjct: 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIA-TFIGYSRQFTRPLNELS 314
Query: 969 SLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEV 1028
+ + A +SA +F ++D + D + L V GE++F V F Y V
Sbjct: 315 NQFNMIQMALASAERIFEILDLEEEKDDPD--AVELREVRGEIEFKNVWFSY--DKKKPV 370
Query: 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088
+D+ I PG+ +ALVG +GSGK+T+++LL RFYD G I +DG++I+K++ LR
Sbjct: 371 LKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKRSSLRSS 430
Query: 1089 MGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERGV 1133
+G+V Q+ +LFS T++ N+ A++ +++ FI L EGY+T++ + G
Sbjct: 431 IGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGE 490
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
LS GQ+Q +AI RA + PKIL+LDEATS +D ++E+ +Q A+ ++M +T++++AHRL
Sbjct: 491 DLSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRL 550
Query: 1194 STIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
+TIKNA LI V+ G IVE G H+ LI K G Y L
Sbjct: 551 NTIKNADLIIVLRDGEIVEMGKHDELIQ-KRGFYYEL 586
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 361 bits (929), Expect = e-115
Identities = 117/282 (41%), Positives = 172/282 (60%), Gaps = 6/282 (2%)
Query: 357 KFFEAINRKPEI-DLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTI 415
F+ + + E+ DL L +G IE ++V+FSY + L + G
Sbjct: 27 NMFDLLKEETEVKDL--PGAGPLRFQKGRIEFENVHFSY--ADGRETLQDVSFTVMPGQT 82
Query: 416 AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS 475
ALVG SG+GKST++ L+ RFYD +G + IDG ++ + +R IG+V Q+ VL +
Sbjct: 83 LALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFND 142
Query: 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535
+I DNI YG+ A +E++AAA+AA I P+G T VGE G++LSGG+KQRVAIA
Sbjct: 143 TIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIA 202
Query: 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595
R ++K P I+LLDEATSALD+ + R +Q +L +V NRTT++V+HRLS + NA+ I VI+
Sbjct: 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQILVIK 262
Query: 596 QGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS 637
G IVE+G H LL G Y + +LQ+ +E+ + +
Sbjct: 263 DGCIVERGRHEALLSRG-GVYADMWQLQQGQEETSEDTKPQT 303
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-110
Identities = 120/267 (44%), Positives = 165/267 (61%), Gaps = 21/267 (7%)
Query: 980 SAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKY-PTRPHIEVFRDLCLTIPP 1038
++F L+ + +++ L G ++F V F Y R +D+ T+ P
Sbjct: 24 DMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYADGRE---TLQDVSFTVMP 79
Query: 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098
G+T+ALVG SG+GKST++ LL RFYD SSG I +DG +I ++ LR +GVV Q+ VL
Sbjct: 80 GQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVL 139
Query: 1099 FSDTIRANI---------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRV 1143
F+DTI NI A+ A + I EGY T VGERG++LSGG+KQRV
Sbjct: 140 FNDTIADNIRYGRVTAGNDEVEAAAQAAGIHDAIMAFPEGYRTQVGERGLKLSGGEKQRV 199
Query: 1144 AIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIA 1203
AIAR I+K P I+LLDEATSALD +ER +Q +L +V +RTT+VVAHRLST+ NA I
Sbjct: 200 AIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVNADQIL 259
Query: 1204 VVSQGMIVEKGSHESLISTKNGIYTSL 1230
V+ G IVE+G HE+L+S + G+Y +
Sbjct: 260 VIKDGCIVERGRHEALLS-RGGVYADM 285
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 316 bits (812), Expect = 3e-95
Identities = 149/556 (26%), Positives = 267/556 (48%), Gaps = 12/556 (2%)
Query: 57 LDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALG 116
+ +VL + + L P L+ I VLK + +AL
Sbjct: 23 IFAVLAPLFMVVEVICDLSQPT-------LLARIVDEGIARGDFSLVLKTGILMLIVALI 75
Query: 117 AGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQ 176
V + A +R +L I+ ++ +T ++ R++ D +Q
Sbjct: 76 GAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFSISNVNR-FHTSSLITRLTNDVTQLQ 134
Query: 177 DAIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQK 236
+ + + ++ F+GG ++A L+ ++ IPP+V+ V + K L +
Sbjct: 135 NLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKI 194
Query: 237 QAA-DSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGAS 295
Q + D + VV + + +R V +F E+ + + K +S + L
Sbjct: 195 QESTDEVN-RVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFSLIVFALPLF 253
Query: 296 VFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAA 355
+FI+ +W+G L+ G +M+ ++ SL L+ A+A
Sbjct: 254 IFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASA 313
Query: 356 FKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTI 415
+ E +N KP I+ N L ++ G + ++V F Y + +L+G + G++
Sbjct: 314 KRVLEVLNEKPAIEEA-DNALALPNVEGSVSFENVEFRYFE-NTDPVLSGVNFSVKPGSL 371
Query: 416 AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS 475
A++G +GSGKST+++LI R DP+ G V +D ++++ +LK +R I V QE VL S
Sbjct: 372 VAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKLKDLRGHISAVPQETVLFSG 431
Query: 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535
+I++N+ +G+ AT +EI AA+ A FI +LP+G D+ V G SGGQKQR++IA
Sbjct: 432 TIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSGGQKQRLSIA 491
Query: 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQ 595
RA++K P++L+LD+ TS++D + + + + L R TT I++ ++ A+ I V+
Sbjct: 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLH 551
Query: 596 QGKIVEKGTHSELLEN 611
+GK+ GTH ELLE+
Sbjct: 552 EGKVAGFGTHKELLEH 567
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 316 bits (811), Expect = 4e-95
Identities = 131/521 (25%), Positives = 242/521 (46%), Gaps = 36/521 (6%)
Query: 730 HWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADH-STG 788
++ + + + + A +R F KV+ + T
Sbjct: 64 KTGILMLIVALIGAVGGIGCTVFASYASQNFGADLRRDLFRKVLSFS---ISNVNRFHTS 120
Query: 789 AIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITG 848
++ RL++D +++LV L ++V+ V G+V+A +L+ +++ + P + +
Sbjct: 121 SLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVKLSSVLIFLIPPIVLLF 180
Query: 849 HIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGI 908
K + +E ++V + + +R V +F EE + ++K E ++ I
Sbjct: 181 VWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSII 240
Query: 909 RQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEV-------FRVFFALSMTA 961
+ L F M + G LV + Q + ++ F+L M
Sbjct: 241 SAFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIG 300
Query: 962 IGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYP 1021
++ +A +SA V ++++ I+ ++ L NV G V F V F+Y
Sbjct: 301 NILNF-------IVRASASAKRVLEVLNEKPAIEEAD-NALALPNVEGSVSFENVEFRYF 352
Query: 1022 TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ 1081
V + ++ PG +A++GE+GSGKST+++L+ R DP G + +D ++++ ++
Sbjct: 353 ENTD-PVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVK 411
Query: 1082 VKWLRQQMGVVSQEPVLFSDTIRANI---------------AEMANANGFISGLQEGYDT 1126
+K LR + V QE VLFS TI+ N+ A++A + FI L EGYD+
Sbjct: 412 LKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDS 471
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
V G SGGQKQR++IARA+VK+PK+L+LD+ TS++D +E+ + D L + TT
Sbjct: 472 RVERGGRNFSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTT 531
Query: 1187 LVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227
++ ++ T A I V+ +G + G+H+ L+ Y
Sbjct: 532 FIITQKIPTALLADKILVLHEGKVAGFGTHKELLEH-CKPY 571
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 208 bits (530), Expect = 4e-59
Identities = 58/239 (24%), Positives = 109/239 (45%), Gaps = 18/239 (7%)
Query: 1009 GEVQFLRVSFKYPTRPHIE-VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
G++ ++ KY + ++ +I PG+ + L+G +GSGKST++S R +
Sbjct: 18 GQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNTE- 74
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--------------AEMANA 1113
G I +DGV + ++ R+ GV+ Q+ +FS T R N+ A+
Sbjct: 75 GEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGL 134
Query: 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
I D ++ + G LS G KQ + +AR+++ + KILLLDE ++ LD + +++
Sbjct: 135 RSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQII 194
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ L Q D T ++ R+ + V+ + + + S L + +
Sbjct: 195 RRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAGFI 253
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 203 bits (519), Expect = 1e-57
Identities = 72/308 (23%), Positives = 131/308 (42%), Gaps = 13/308 (4%)
Query: 382 RGDIELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
G + +KD+ Y IL I G L+G +GSGKST++S R +
Sbjct: 17 GGQMTVKDLTAKY--TEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT- 73
Query: 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
GE+ IDGV+ L+ R+ G++ Q+ + S + R N+ H + +EI A+
Sbjct: 74 EGEIQIDGVSWDSITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAH-SDQEIWKVADEV 132
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
I+ P LD + + G LS G KQ + +AR+++ +ILLLDE ++ LD + +
Sbjct: 133 GLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQ 192
Query: 561 MVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
+++ L + + T ++ R+ + + VI++ K+ + + EL P +
Sbjct: 193 IIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVAG- 251
Query: 621 RLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPD-VSLS-RL 678
S K ++ P + + P + +SL R
Sbjct: 252 -----FIGSPKMNFLPVKVTATAIDQVQVELPMPNRQQVWLPVESRDVQVGANMSLGIRP 306
Query: 679 AYLNSPEV 686
+L ++
Sbjct: 307 EHLLPSDI 314
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 165 bits (419), Expect = 3e-46
Identities = 54/240 (22%), Positives = 118/240 (49%), Gaps = 17/240 (7%)
Query: 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
++ +++V + +L I G + A+ G++G+GK++++ +I +P
Sbjct: 4 TTEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSE 62
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAAN 501
G++ G +I SQ ++ +I++NI +G ++ + ++ +A
Sbjct: 63 GKIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQ 108
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
I + + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD + +
Sbjct: 109 LEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKE 168
Query: 562 V-QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620
+ + + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL ++ +
Sbjct: 169 IFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLQ-PDFSSKL 227
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-37
Identities = 55/239 (23%), Positives = 111/239 (46%), Gaps = 32/239 (13%)
Query: 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068
EV V+ + V +D+ I G+ +A+ G +G+GK++++ ++ +PS G
Sbjct: 5 TEVVMENVTAFW-EEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEG 63
Query: 1069 HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---AEMANANGF--------- 1116
I G ++ SQ + TI+ NI + +
Sbjct: 64 KIKHSG-------------RISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQL 109
Query: 1117 ---ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESER-V 1172
IS E + ++GE G+ LSGGQ+ R+++ARA+ K+ + LLD LD+ +E+ +
Sbjct: 110 EEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEI 169
Query: 1173 VQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
+ + ++M ++T ++V ++ +K A I ++ +G G+ L + ++S +
Sbjct: 170 FESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LQPDFSSKL 227
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 161 bits (410), Expect = 6e-45
Identities = 76/252 (30%), Positives = 128/252 (50%), Gaps = 21/252 (8%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
I +++ F++ AR D LNG IP G + A+VG G GKS+++S + D G
Sbjct: 2 NSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEG 60
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502
V I G + V Q+ + + S+R+NI +G + ++ +A
Sbjct: 61 HVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQLE-EPYYRSVIQACAL 106
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562
++ LP G T +GE G+ LSGGQKQRV++ARA+ + I L D+ SA+D+ G+ +
Sbjct: 107 LPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVDAHVGKHI 166
Query: 563 -QEALDR--VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619
+ + ++ N+T ++V+H +S + ++I V+ GKI E G++ ELL GA+
Sbjct: 167 FENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLARD-GAFAEF 225
Query: 620 IRLQETCKESEK 631
L+
Sbjct: 226 --LRTYASHHHH 235
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 135 bits (343), Expect = 5e-36
Identities = 66/250 (26%), Positives = 117/250 (46%), Gaps = 40/250 (16%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + +F + R + +IP G +A+VG+ G GKS+++S L D
Sbjct: 1 MNSITVRNATFTW-ARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVE 59
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---AEMANANGF-------- 1116
GH+ + G + V Q+ + +D++R NI ++ +
Sbjct: 60 GHVAIKG-------------SVAYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACA 105
Query: 1117 ----ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
+ L G T +GE+GV LSGGQKQRV++ARA+ I L D+ SA+D V
Sbjct: 106 LLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD---AHV 162
Query: 1173 VQDALDQVMV------DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGI 1226
+ + V+ ++T ++V H +S + +I V+S G I E GS++ L++ ++G
Sbjct: 163 GKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLA-RDGA 221
Query: 1227 YTSLIEPHTT 1236
+ + + +
Sbjct: 222 FAEFLRTYAS 231
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-44
Identities = 82/242 (33%), Positives = 127/242 (52%), Gaps = 25/242 (10%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I+L ++ + Q LN L +P G I ++G SG+GKST+I + P G
Sbjct: 25 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 84
Query: 444 VLIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHA--TKEEIQAAA 497
VL+DG L E +L R +IG++ Q LLSS ++ N+A K+E++
Sbjct: 85 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 144
Query: 498 EAANASHFIKNLPQ--GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555
L GL + LSGGQKQRVAIARA+ +P++LL D+ATSALD
Sbjct: 145 T---------ELLSLVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Query: 556 SESGRMVQEALDRVMINR----TTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
+ R + E L INR T ++++H + +++ + +AVI G+++E+ T SE+
Sbjct: 196 PATTRSILELLKD--INRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 253
Query: 611 NP 612
+P
Sbjct: 254 HP 255
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 137 bits (346), Expect = 5e-35
Identities = 76/232 (32%), Positives = 122/232 (52%), Gaps = 32/232 (13%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYD 1064
M ++ + F TR I+ ++ L +P G+ ++G SG+GKST ++LL+R
Sbjct: 24 MIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLER--- 79
Query: 1065 PSSGHITLDGVEIQKLQVKWL---RQQMGVVSQEPVLF-SDTIRANIA---EMANANGF- 1116
P+ G + +DG E+ L L R+Q+G++ Q L S T+ N+A E+ N
Sbjct: 80 PTEGSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDE 139
Query: 1117 ----ISGLQEGYDTLVG--ERG----VQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
++ L LVG ++ LSGGQKQRVAIARA+ PK+LL D+ATSALD
Sbjct: 140 VKRRVTELLS----LVGLGDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDQATSALD 195
Query: 1167 IESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGS 1215
+ R + + L + T L++ H + +K +AV+S G ++E+ +
Sbjct: 196 PATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 2e-43
Identities = 58/241 (24%), Positives = 118/241 (48%), Gaps = 26/241 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++++++N++Y L G + I G + A++G +G GKST+ P +G +
Sbjct: 8 LKVEELNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIAYGKTHA--TKEEIQAAAE 498
L D ++ + +RE IG+V Q+P L S+S+ ++++G + ++EI+ +
Sbjct: 66 LFDNKPIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVD 125
Query: 499 AA----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A H LS GQK+RVAIA ++ +P++L+LDE T+ L
Sbjct: 126 NALKRTGIEHLKDKPTH-----------CLSFGQKKRVAIAGVLVMEPKVLILDEPTAGL 174
Query: 555 DSESGRMVQEALDRVM--INRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLEN 611
D + + L + + T +I +H + ++ + + V+++G+++ +G E+
Sbjct: 175 DPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234
Query: 612 P 612
Sbjct: 235 K 235
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 4e-32
Identities = 56/226 (24%), Positives = 100/226 (44%), Gaps = 37/226 (16%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+++ Y + + + I G+ A++G +G GKST+ PSSG I D
Sbjct: 13 LNYNYS--DGTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNK 70
Query: 1076 EIQ--KLQVKWLRQQMGVVSQEPV--LFSDTIRANIAEMANANGFISGLQ-EGYDT---- 1126
I + + LR+ +G+V Q+P LFS ++ +++ F G
Sbjct: 71 PIDYSRKGIMKLRESIGIVFQDPDNQLFSASVYQDVS-------F--GAVNMKLPEDEIR 121
Query: 1127 --------LVG-----ERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
G ++ LS GQK+RVAIA +V EPK+L+LDE T+ LD
Sbjct: 122 KRVDNALKRTGIEHLKDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPMGVSE 181
Query: 1173 VQDALDQVMVDR--TTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGS 1215
+ L ++ + T ++ H + + + V+ +G ++ +G+
Sbjct: 182 IMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 158 bits (402), Expect = 3e-43
Identities = 58/275 (21%), Positives = 128/275 (46%), Gaps = 17/275 (6%)
Query: 379 DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438
++ + ++FS + +L I G + A+ G++G+GK++++ +I +
Sbjct: 30 NNRKTSNGDDSLSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELE 89
Query: 439 PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
P G++ G +I SQ ++ +I++NI G ++ + ++ +
Sbjct: 90 PSEGKIKHSG-------------RISFCSQNSWIMPGTIKENI-IGVSY-DEYRYRSVIK 134
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A I + + +GE GI LSGGQ+ R+++ARA+ KD + LLD LD +
Sbjct: 135 ACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLT 194
Query: 559 GRMV-QEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617
+ + + + ++M N+T ++V+ ++ ++ A+ I ++ +G GT SEL ++
Sbjct: 195 EKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNLR-PDFS 253
Query: 618 RLIRLQETCKESEKSAVNNSDSDNQPFASPKITTP 652
+ ++ + N+ ++ S + P
Sbjct: 254 SKLMGCDSFDQFSAERRNSILTETLHRFSLEGDAP 288
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 139 bits (353), Expect = 1e-36
Identities = 54/236 (22%), Positives = 111/236 (47%), Gaps = 30/236 (12%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+SF + V +D+ I G+ +A+ G +G+GK++++ ++ +PS G I G
Sbjct: 41 LSFSNFSLLGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG- 99
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI--AEMANANGF------------ISGLQ 1121
++ SQ + TI+ NI + + IS
Sbjct: 100 ------------RISFCSQNSWIMPGTIKENIIGVSY-DEYRYRSVIKACQLEEDISKFA 146
Query: 1122 EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV-QDALDQV 1180
E + ++GE G+ LSGGQ+ R+++ARA+ K+ + LLD LD+ +E+ + + + ++
Sbjct: 147 EKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKL 206
Query: 1181 MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHTT 1236
M ++T ++V ++ +K A I ++ +G G+ L + ++S + +
Sbjct: 207 MANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQN-LRPDFSSKLMGCDS 261
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 1e-42
Identities = 51/246 (20%), Positives = 97/246 (39%), Gaps = 28/246 (11%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I+LK+V + + E L L + NG ++G +GSGK+T++ I P +G
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEV-NGEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEEIQAAAEA 499
+ I+G+ +++ IR I + P + ++ D + + ++ +A
Sbjct: 60 IFINGMEVRK-----IRNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLKA 114
Query: 500 AN-ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
++ +LS GQ V + A+ P I+ LDE +D+
Sbjct: 115 LKLGEEILRRKLY-----------KLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAAR 163
Query: 559 GRMVQEALDRVMINRTTVIVSHRLS-LIRNANIIAVIQQGKIVEK-GTHSELLENPYGAY 616
++ + + ++V+H L L A G ++ + SELLE+
Sbjct: 164 RHVISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLESSIVEG 221
Query: 617 NRLIRL 622
R L
Sbjct: 222 ERNDAL 227
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-33
Identities = 43/221 (19%), Positives = 86/221 (38%), Gaps = 36/221 (16%)
Query: 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
+Q V + + ++ L + G+ + ++G +GSGK+T++ + P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGN 59
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD--TIRANIA--------------EMANA 1113
I ++G+E++K+ R + + P + T+ + EM
Sbjct: 60 IFINGMEVRKI-----RNYIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRDLFLEMLK- 113
Query: 1114 NGFISGLQEGYDTLVGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
L E R + +LS GQ V + A+ +P+I+ LDE +D V
Sbjct: 114 ---ALKLGEEI----LRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFENVDAARRHV 166
Query: 1173 VQDALDQVMVDRTTLVVAHRLST-IKNAHLIAVVSQGMIVE 1212
+ + + + ++V H L A G ++
Sbjct: 167 ISRYIKE--YGKEGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 151 bits (385), Expect = 3e-41
Identities = 62/242 (25%), Positives = 116/242 (47%), Gaps = 27/242 (11%)
Query: 384 DIELKDVNFSYPARP--DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441
IE+ +V+ + +++ L L+I G + G +GSGKST++ ++ +P +
Sbjct: 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTS 61
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIAYGKTH--ATKEEIQAAA 497
G+VL DG + + IR IG+ Q P + + D +A+ + ++ +
Sbjct: 62 GDVLYDG---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVK 118
Query: 498 EAA-----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+A + F +P LSGG+K+RVAIA ++ +P IL+LDE
Sbjct: 119 KAMEFVGLDFDSFKDRVPF-----------FLSGGEKRRVAIASVIVHEPDILILDEPLV 167
Query: 553 ALDSESGRMVQEALDRV-MINRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLE 610
LD E + +++ + +T +++SH + + + + + V+++GK V GT E LE
Sbjct: 168 GLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLE 227
Query: 611 NP 612
Sbjct: 228 KY 229
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 1e-30
Identities = 54/217 (24%), Positives = 106/217 (48%), Gaps = 20/217 (9%)
Query: 1016 VSFKYP--TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073
VS + T + ++ L I G+ + + G +GSGKST++ ++ +P+SG + D
Sbjct: 8 VSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYD 67
Query: 1074 GVEIQKLQVKWLRQQMGVVSQEPV--LFSDTIRANIA-----------EMANANGFISGL 1120
G ++ + +R+ +G+ Q P F++ + +A + + +
Sbjct: 68 G---ERKKGYEIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV 124
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
+D+ LSGG+K+RVAIA IV EP IL+LDE LD E + + +++
Sbjct: 125 GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKW 184
Query: 1181 -MVDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGS 1215
+ +T ++++H + T+ + + V+ +G V G+
Sbjct: 185 KTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGT 221
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 148 bits (375), Expect = 7e-40
Identities = 79/241 (32%), Positives = 122/241 (50%), Gaps = 28/241 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I++ + S+ ++L G + I G + ++G SGSGKST + + D GE+
Sbjct: 25 IDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEI 81
Query: 445 LIDGVNL--KEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
+IDG+NL K+ L +RE++G+V Q P + ++ +NI K + A
Sbjct: 82 IIDGINLKAKDTNLNKVREEVGMVFQRFNLFPHM---TVLNNITLAPMKVRKWPREKAEA 138
Query: 499 AANASHFIKNLPQ-GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
A ++ L + GL + LSGGQ QRVAIARA+ +P+I+L DE TSALD E
Sbjct: 139 KA-----MELLDKVGLKDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE 193
Query: 558 SGRMVQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611
MV E L VM T V+V+H + R + + + G I+E+G +L +
Sbjct: 194 ---MVGEVLS-VMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249
Query: 612 P 612
P
Sbjct: 250 P 250
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 126 bits (318), Expect = 2e-32
Identities = 71/221 (32%), Positives = 105/221 (47%), Gaps = 32/221 (14%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI--QKLQV 1082
+EV + + + I G+ + ++G SGSGKST + L D G I +DG+ + + +
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95
Query: 1083 KWLRQQMGVVSQEPVLFSD-TIRANIAE-------------MANANGFIS--GLQEGYDT 1126
+R+++G+V Q LF T+ NI A A + GL++
Sbjct: 96 NKVREEVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKVGLKDKAHA 155
Query: 1127 LVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD--- 1183
LSGGQ QRVAIARA+ EPKI+L DE TSALD E +V + L VM
Sbjct: 156 YPD----SLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPE---MVGEVLS-VMKQLAN 207
Query: 1184 --RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
T +VV H + + + + G I+E+G E L
Sbjct: 208 EGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFD 248
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 145 bits (367), Expect = 1e-38
Identities = 53/244 (21%), Positives = 99/244 (40%), Gaps = 33/244 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I+L + + IL I G L G +G+GK+T+++++ + +G V
Sbjct: 22 IQLDQIGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTV 78
Query: 445 LIDGVNL--KEFQLKWIREKIGLVSQE---PVLLSSSIRDNIAYGKT-------HATKEE 492
+ G + + +R+ IG VS + D + G E
Sbjct: 79 NLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEI 138
Query: 493 IQAAAEA---ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
A + S + LS G+KQRV IARA++ P++L+LDE
Sbjct: 139 RNEAHQLLKLVGMSAKAQQYIG-----------YLSTGEKQRVMIARALMGQPQVLILDE 187
Query: 550 ATSALDSESGRMVQEALDRVMINRTT---VIVSHRLSLIRNA-NIIAVIQQGKIVEKGTH 605
+ LD + + LD + + T + V+H + I + I +++ G+ +++G
Sbjct: 188 PAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAV 247
Query: 606 SELL 609
++L
Sbjct: 248 EDIL 251
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 136 bits (346), Expect = 6e-36
Identities = 53/235 (22%), Positives = 103/235 (43%), Gaps = 32/235 (13%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+ + + + + I G L G +G+GK+T++++L + +SG + L G
Sbjct: 27 IGRMKQGKT---ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGK 83
Query: 1076 EIQKL--QVKWLRQQMGVVSQ---------EPVL------FSDTI----RANIAEMANAN 1114
K+ + +RQ +G VS E V+ +I + A+
Sbjct: 84 MPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAH 143
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
+ + G + LS G+KQRV IARA++ +P++L+LDE + LD + +
Sbjct: 144 QLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLL 201
Query: 1175 DALDQVMVDRTT---LVVAHRLSTIKNA--HLIAVVSQGMIVEKGSHESLISTKN 1224
LD + T + V H + I I ++ G +++G+ E +++++N
Sbjct: 202 SILDSLSDSYPTLAMIYVTHFIEEITANFSK-ILLLKDGQSIQQGAVEDILTSEN 255
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 6e-38
Identities = 72/253 (28%), Positives = 126/253 (49%), Gaps = 40/253 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + D++ Y ++L G L G + +++G+SGSGKST + I P G +
Sbjct: 7 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 63
Query: 445 LIDGVNL-------------KEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYGKTH 487
+++G N+ + QL+ +R ++ +V Q + ++ +N+
Sbjct: 64 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM---TVLENVMEAPIQ 120
Query: 488 ATKEEIQAAAEAANASHFIKNLPQ-GL-DTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
A E A +K L + G+ + G++ + LSGGQ+QRV+IARA+ +P +L
Sbjct: 121 VLGLSKHDARERA-----LKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVL 175
Query: 546 LLDEATSALDSESGRMVQEALDRVMIN-----RTTVIVSHRLSLIRN-ANIIAVIQQGKI 599
L DE TSALD E +V E L +M +T V+V+H + R+ ++ + + QGKI
Sbjct: 176 LFDEPTSALDPE---LVGEVLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 231
Query: 600 VEKGTHSELLENP 612
E+G ++ NP
Sbjct: 232 EEEGDPEQVFGNP 244
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-32
Identities = 72/232 (31%), Positives = 111/232 (47%), Gaps = 42/232 (18%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ------ 1078
EV + + L G I+++G SGSGKST + + PS G I ++G I
Sbjct: 18 GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKD 77
Query: 1079 -------KLQVKWLRQQMGVVSQEPVLFSD-TIRANIAE-------------MANANGFI 1117
K Q++ LR ++ +V Q L+S T+ N+ E A ++
Sbjct: 78 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYL 137
Query: 1118 S--GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175
+ G+ E G+ V LSGGQ+QRV+IARA+ EP +LL DE TSALD E +V +
Sbjct: 138 AKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPE---LVGE 191
Query: 1176 ALDQVMVD-----RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
L +M +T +VV H + ++ + + + QG I E+G E +
Sbjct: 192 VLR-IMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQVFG 242
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 135 bits (342), Expect = 5e-36
Identities = 59/232 (25%), Positives = 102/232 (43%), Gaps = 32/232 (13%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ +++ +IL G L + G +++G SGSGKST++ ++ P G+V
Sbjct: 5 LRAENIKKVIR---GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKV 61
Query: 445 LIDGVN---LKEFQLKWIR-EKIGLVSQEPVLLSS-SIRDNIA----YGKTHATKEEIQA 495
++G E +L +R K+G V Q L+ + +N+ KE +
Sbjct: 62 FLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPK-KEAKER 120
Query: 496 AAEAANA---SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ + P +LSGG++QRVAIARA+ +P +L DE T
Sbjct: 121 GEYLLSELGLGDKLSRKPY-----------ELSGGEQQRVAIARALANEPILLFADEPTG 169
Query: 553 ALDSESGRMVQEALDRVMINR---TTVIVSHRLSLIRNANIIAVIQQGKIVE 601
LDS + + V + + IN + V+V+H L + ++ GK+V
Sbjct: 170 NLDSANTKRVMDIFLK--INEGGTSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 57/209 (27%), Positives = 94/209 (44%), Gaps = 30/209 (14%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHITLDGVEIQKLQVK 1083
E+ + + L++ G+ ++++G SGSGKST ++ LL P+ G + L+G E+ K
Sbjct: 18 EILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDA---PTEGKVFLEGKEVDYTNEK 74
Query: 1084 WL----RQQMGVVSQE---------------PVLFSDTIRANIAEMANANGFISGLQEGY 1124
L +++G V Q P+L + E GL +
Sbjct: 75 ELSLLRNRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSELGLGDKL 134
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184
+ +LSGG++QRVAIARA+ EP +L DE T LD + + V D ++
Sbjct: 135 S----RKPYELSGGEQQRVAIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGG 190
Query: 1185 TTLV-VAHRLSTIKNAHLIAVVSQGMIVE 1212
T++V V H + H + G +V
Sbjct: 191 TSIVMVTHERELAELTHRTLEMKDGKVVG 219
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 9e-35
Identities = 70/226 (30%), Positives = 116/226 (51%), Gaps = 11/226 (4%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
++LK+V +Y + L L I G +++G SGSGKST++++I P GE
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 444 VLIDGVN---LKEFQLKWIR-EKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAE 498
V ID + L + +L IR +KIG V Q+ L+ + +N+ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 499 AANASHFIKNLPQGLDTNVGEHG-IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
A +K L+ H QLSGGQ+QRVAIARA+ +P I+L D+ T ALDS+
Sbjct: 122 RKRALECLKMA--ELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSK 179
Query: 558 SGRMVQEALDRV--MINRTTVIVSHRLSLIRNANIIAVIQQGKIVE 601
+G + + L ++ +T V+V+H +++ R I ++ G++
Sbjct: 180 TGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 2e-25
Identities = 56/214 (26%), Positives = 102/214 (47%), Gaps = 33/214 (15%)
Query: 1026 IEVFRDLCLTIPPGKTIALVGESGSGKST---VISLLQRFYDPSSGHITLDGVEIQKL-- 1080
I +++ L I G+ ++++G SGSGKST +I L + P+ G + +D ++ L
Sbjct: 18 IYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDK---PTEGEVYIDNIKTNDLDD 74
Query: 1081 -QVKWLR-QQMGVVSQE---------------PVLFSDTIRANIAE---MANANGFISGL 1120
++ +R ++G V Q+ P++F + E A ++ L
Sbjct: 75 DELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAEL 134
Query: 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180
+ + + QLSGGQ+QRVAIARA+ P I+L D+ T ALD ++ + L ++
Sbjct: 135 E---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKL 191
Query: 1181 MVD--RTTLVVAHRLSTIKNAHLIAVVSQGMIVE 1212
+ +T +VV H ++ + I + G +
Sbjct: 192 NEEDGKTVVVVTHDINVARFGERIIYLKDGEVER 225
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 138 bits (350), Expect = 5e-34
Identities = 56/236 (23%), Positives = 86/236 (36%), Gaps = 21/236 (8%)
Query: 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
L+N F S K V + + ++GE+G+GK+T+I LL
Sbjct: 345 LQNDSASRAFSYPSLKK--TQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGAL 402
Query: 1064 DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV--LFSDTIRANIAEMANANGFIS--G 1119
P G I KL V Q++ V LF IR +
Sbjct: 403 KPDEGQD------IPKLNVSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLR 456
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
+ + D V LSGG+ QRVAI A+ I L+DE ++ LD E + + +
Sbjct: 457 IDDIIDQEVQH----LSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRR 512
Query: 1180 VM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVE--KGSHESLISTKNGIYTSL 1230
+ +T +V H A + V + ESL++ N +L
Sbjct: 513 FILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 135 bits (341), Expect = 7e-33
Identities = 51/257 (19%), Positives = 89/257 (34%), Gaps = 31/257 (12%)
Query: 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTS 422
R L +D++ D + ++ + + +LN + I ++G +
Sbjct: 328 RFRTEALQFRIADATEDLQNDSASRAFSYPSLKKTQGDFVLNVEEGEFSDSEILVMMGEN 387
Query: 423 GSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDN 480
G+GK+T+I L+ P G+ + + +KI V L IR
Sbjct: 388 GTGKTTLIKLLAGALKPDEGQDIPKL------NVSMKPQKIAPKFPGTVRQLFFKKIRGQ 441
Query: 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540
+ + I Q LSGG+ QRVAI A+
Sbjct: 442 FL------NPQFQTDVVKPLRIDDIIDQEVQ-----------HLSGGELQRVAIVLALGI 484
Query: 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQG 597
I L+DE ++ LDSE + + + R + +T IV H + A+ + V +
Sbjct: 485 PADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGI 544
Query: 598 KIVEKGTHS--ELLENP 612
+ LL
Sbjct: 545 PSKNAHARAPESLLTGC 561
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 7e-29
Identities = 52/244 (21%), Positives = 93/244 (38%), Gaps = 33/244 (13%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT---- 1071
V+ +Y T PG+ + LVG +G GKST + +L P+ G
Sbjct: 83 VTHRYSANSFK---LHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPE 139
Query: 1072 -------LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL--QE 1122
G E+Q K L + + + + D I I G + L ++
Sbjct: 140 WQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQ--YVDNIPRAIKGPVQKVGELLKLRMEK 197
Query: 1123 GYDTL-----------VGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
+ + V +R + +LSGG+ QR AI + V+E + + DE +S LD++
Sbjct: 198 SPEDVKRYIKILQLENVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQR 257
Query: 1171 RVVQDALDQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+ ++ ++ H LS + + + ++ G+ G S + GI
Sbjct: 258 LNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCII-YGVPSVYGVVTLPASVREGINI 316
Query: 1229 SLIE 1232
L
Sbjct: 317 FLDG 320
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 114 bits (288), Expect = 2e-26
Identities = 49/237 (20%), Positives = 90/237 (37%), Gaps = 31/237 (13%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPN----GTIAALVGTSGSGKSTVISLI------ 433
V Y A N F L G + LVGT+G GKST + ++
Sbjct: 77 TNLEAHVTHRYSA-------NSFKLHRLPTPRPGQVLGLVGTNGIGKSTALKILAGKQKP 129
Query: 434 --QRFYDPQAGEVLIDGVNLKEFQ---LKWIREKIGLVSQEPV--LLSSSIRDNIAYGKT 486
RF DP + +I E Q K + + I + + + +I+ +
Sbjct: 130 NLGRFDDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGE 189
Query: 487 HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546
++ + + L L ++ +LSGG+ QR AI + +++ + +
Sbjct: 190 LLKLRMEKSPEDVKRYIKIL-QLENVLKRDIE----KLSGGELQRFAIGMSCVQEADVYM 244
Query: 547 LDEATSALDSESGRMVQEALDRVMINRTTVI-VSHRLSLIRN-ANIIAVIQQGKIVE 601
DE +S LD + + + ++ VI V H LS++ ++ + +I V
Sbjct: 245 FDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDFVCIIYGVPSVY 301
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 125 bits (316), Expect = 1e-32
Identities = 49/227 (21%), Positives = 98/227 (43%), Gaps = 33/227 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++D++ Y D+ +L + I G + G +G GK+T++ I + P GE+
Sbjct: 11 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 66
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIA-----YGKTHATKEEIQAAAE 498
+ +GV + + ++ KI + +E ++ S+ D + YG K EI A E
Sbjct: 67 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVN-KNEIMDALE 120
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
+ K L + LS G +RV +A ++ + I +LD+ A+D +S
Sbjct: 121 SVEVLDLKKKLGE------------LSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 168
Query: 559 GRMVQEALDRVMINRTTVIV--SHRLSLIRNANIIAVIQQGKIVEKG 603
V +++ ++ + VI+ LS ++ + +
Sbjct: 169 KHKVLKSILEILKEKGIVIISSREELSY---CDVNENLHKYSTKIDK 212
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 111 bits (280), Expect = 1e-27
Identities = 34/193 (17%), Positives = 84/193 (43%), Gaps = 22/193 (11%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
+ +TI G + G +G GK+T++ + + P G I +GV I K+ + ++
Sbjct: 27 RITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITKV-----KGKIF 81
Query: 1091 VVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGV--------QLSGGQKQ 1141
+ +E ++ ++ + +A+ G + + + V +LS G +
Sbjct: 82 FLPEEIIVPRKISVEDYLKAVASLYG-VKVNKNEIMDALESVEVLDLKKKLGELSQGTIR 140
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201
RV +A ++ +I +LD+ A+D +S+ V ++ +++ ++ +++ S
Sbjct: 141 RVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVII---SSR----EE 193
Query: 1202 IAVVSQGMIVEKG 1214
++ + K
Sbjct: 194 LSYCDVNENLHKY 206
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 132 bits (334), Expect = 3e-32
Identities = 55/204 (26%), Positives = 90/204 (44%), Gaps = 14/204 (6%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
I G+ I +VG +G GK+T + +L +P+ G I D K Q
Sbjct: 301 RLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDLTVAYKPQYIKADY 360
Query: 1088 QMGVVSQEPVLFSDTIRANIAEMANANGFIS--GLQEGYDTLVGERGVQLSGGQKQRVAI 1145
+ V + L S + + + G+ + YD V E LSGG+ QRVAI
Sbjct: 361 EG-TVYE---LLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNE----LSGGELQRVAI 412
Query: 1146 ARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLI 1202
A ++++ I LLDE ++ LD+E V A+ +M ++T LVV H + I + +
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 1203 AVVSQGMIVEKGSHESLISTKNGI 1226
V +G + G + + G+
Sbjct: 473 MVF-EGEPGKYGRALPPMGMREGM 495
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 1e-30
Identities = 54/270 (20%), Positives = 95/270 (35%), Gaps = 46/270 (17%)
Query: 357 KFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIA 416
KF + R V +L G L+ I G +
Sbjct: 272 KFTKTGERVEIERETLVTYPRLVKDYGSFRLEVEPGE----------------IKKGEVI 315
Query: 417 ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLS 474
+VG +G GK+T + ++ +P G++ D + + + I + V LLS
Sbjct: 316 GIVGPNGIGKTTFVKMLAGVEEPTEGKIEWDL------TVAYKPQYIKADYEGTVYELLS 369
Query: 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534
+ + + +LSGG+ QRVAI
Sbjct: 370 KIDASKLN------SNFYKTELLKPLGIIDLYDREVN-----------ELSGGELQRVAI 412
Query: 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANII 591
A +++D I LLDE ++ LD E V A+ +M +T ++V H + +I ++ +
Sbjct: 413 AATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRL 472
Query: 592 AVIQQGKIVEKGTHSELLENPYGAYNRLIR 621
V +G+ + G NR +
Sbjct: 473 MVF-EGEPGKYGRALP-PMGMREGMNRFLA 500
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-27
Identities = 54/213 (25%), Positives = 89/213 (41%), Gaps = 23/213 (10%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQ-----RFYD-PSSGHITL---DGVEIQKLQVKW 1084
+ G + +VG +G+GKST + +L S + G E+Q K
Sbjct: 42 PVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYFEKL 101
Query: 1085 LRQQMGVVSQEPVLFSDTI----RANIAEMANANGFISGLQEGYDTL----VGERGV-QL 1135
++ V + + D I + + E+ L+E L V ER + L
Sbjct: 102 KNGEIRPVVKPQ--YVDLIPKAVKGKVIELLKKADETGKLEEVVKALELENVLEREIQHL 159
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA-HRLS 1194
SGG+ QRVAIA A+++ DE +S LDI A+ ++ + +++V H L+
Sbjct: 160 SGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLA 219
Query: 1195 TIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226
+ + +I VV G G T+NGI
Sbjct: 220 VLDYLSDIIHVV-YGEPGVYGIFSQPKGTRNGI 251
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 3e-27
Identities = 52/238 (21%), Positives = 97/238 (40%), Gaps = 37/238 (15%)
Query: 388 KDVNFSYPARPDEQILNGFCL----LIPNGTIAALVGTSGSGKSTVIS-----LIQRFYD 438
+D Y N F L ++ G + +VG +G+GKST + LI
Sbjct: 25 EDCVHRYGV-------NAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCG 77
Query: 439 -PQAGEVLIDGVNLKEFQLKWIREKIGLVS---QEPV--LLSSSIRDNIAYG-KTHATKE 491
+ + +I E Q + + K G + + L+ +++ + K
Sbjct: 78 DNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVKPQYVDLIPKAVKGKVIELLKKADETG 137
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
+++ +A + ++ Q LSGG+ QRVAIA A++++ DE +
Sbjct: 138 KLEEVVKALELENVLEREIQ-----------HLSGGELQRVAIAAALLRNATFYFFDEPS 186
Query: 552 SALDSESGRMVQEALDRVMINRTTVI-VSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
S LD A+ R+ +V+ V H L+++ ++II V+ G+ G S+
Sbjct: 187 SYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVV-YGEPGVYGIFSQ 243
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 128 bits (323), Expect = 5e-32
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 38/246 (15%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + ++ S+ P +LN L + G I ++G SG GK+T++ + F P +GE+
Sbjct: 5 LHIGHLSKSFQNTP---VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEI 61
Query: 445 LIDG--VNLKEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYG--KTHATKEEIQAA 496
+ G + K L ++G + QE P L ++ NIAYG + +
Sbjct: 62 SLSGKTIFSKNTNLPVRERRLGYLVQEGVLFPHL---TVYRNIAYGLGNGKGRTAQERQR 118
Query: 497 AEAANA----SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
EA S P +LSGGQ+QR A+ARA+ DP ++LLDE S
Sbjct: 119 IEAMLELTGISELAGRYPH-----------ELSGGQQQRAALARALAPDPELILLDEPFS 167
Query: 553 ALDSESGRMVQEALDRVM--INRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHS 606
ALD + R ++E + + ++ V VSH L A+ IAV++QG+I++ +
Sbjct: 168 ALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQY---ADRIAVMKQGRILQTASPH 224
Query: 607 ELLENP 612
EL P
Sbjct: 225 ELYRQP 230
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-24
Identities = 53/167 (31%), Positives = 79/167 (47%), Gaps = 43/167 (25%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-- 1085
V D+ L++ PG+ + ++G SG GK+T++ L F P SG I+L G I L
Sbjct: 19 VLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNT-NLPV 77
Query: 1086 -RQQMGVVSQEPVLF-------------------SDTIRANIAEMANANGFISGLQEGYD 1125
+++G + QE VLF + R I M L+
Sbjct: 78 RERRLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAM---------LE---- 124
Query: 1126 TLVGERGV------QLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
L G + +LSGGQ+QR A+ARA+ +P+++LLDE SALD
Sbjct: 125 -LTGISELAGRYPHELSGGQQQRAALARALAPDPELILLDEPFSALD 170
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 130 bits (330), Expect = 2e-31
Identities = 57/231 (24%), Positives = 94/231 (40%), Gaps = 14/231 (6%)
Query: 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064
E V E + L + I G+ I +VG +G GK+T + +L +
Sbjct: 348 ERVDVERETLVEYPRLVKDYGSFKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE 407
Query: 1065 PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS--GLQE 1122
P+ G + D K Q + V + L S + + + G+ +
Sbjct: 408 PTEGKVEWDLTVAYKPQYIKAEYEG-TVYE---LLSKIDSSKLNSNFYKTELLKPLGIID 463
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QV 1180
YD V + LSGG+ QRVAIA ++++ I LLDE ++ LD+E V A+
Sbjct: 464 LYDRNVED----LSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLME 519
Query: 1181 MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSL 1230
++T LVV H + I + + V +G G + + G+ L
Sbjct: 520 KNEKTALVVEHDVLMIDYVSDRLIVF-EGEPGRHGRALPPMGMREGMNRFL 569
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 126 bits (319), Expect = 4e-30
Identities = 56/263 (21%), Positives = 102/263 (38%), Gaps = 32/263 (12%)
Query: 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSG 423
R ++ + D+ + ++ L I G + +VG +G
Sbjct: 335 RFRPYEIRFTKLSERVDVERETLVEYPRLVK--DYGSFKLEVEPGEIRKGEVIGIVGPNG 392
Query: 424 SGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNI 481
GK+T + ++ +P G+V D + + + I + V LLS +
Sbjct: 393 IGKTTFVKMLAGVEEPTEGKVEWDL------TVAYKPQYIKAEYEGTVYELLSKIDSSKL 446
Query: 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541
++ K E+ + D NV + LSGG+ QRVAIA +++D
Sbjct: 447 ---NSNFYKTELLKPL----------GIIDLYDRNVED----LSGGELQRVAIAATLLRD 489
Query: 542 PRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGK 598
I LLDE ++ LD E V A+ +M +T ++V H + +I ++ + V +G+
Sbjct: 490 ADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVF-EGE 548
Query: 599 IVEKGTHSELLENPYGAYNRLIR 621
G + NR +
Sbjct: 549 PGRHGRALPPMGM-REGMNRFLA 570
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 6e-28
Identities = 54/283 (19%), Positives = 102/283 (36%), Gaps = 33/283 (11%)
Query: 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVIS-----LIQRFYD-PQA 441
+D Y + +L ++ + +VG +G+GK+T + LI + +
Sbjct: 95 EDCVHRY--GVNAFVLYRLPIVKDGMVVG-IVGPNGTGKTTAVKILAGQLIPNLCEDNDS 151
Query: 442 GEVLIDGVNLKEFQLKWIREKIGLVS---QEPV--LLSSSIRDNIAYGKTHATKEEIQAA 496
+ +I E Q + R K G + + LL +++ + +E+
Sbjct: 152 WDNVIRAFRGNELQNYFERLKNGEIRPVVKPQYVDLLPKAVKGKVRELLKK--VDEVGKF 209
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
E L LD + QLSGG+ QRVAIA A+++ DE +S LD
Sbjct: 210 EEVVKE----LELENVLDRELH----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDI 261
Query: 557 ESGRMVQEALDRVMINRTTVI-VSHRLSLIRN-ANIIAVIQ-----QGKIVEKGTHSELL 609
V + R+ V+ V H L+++ +++I V+ G + +
Sbjct: 262 RQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPGVYGIFSKPKGTRNGI 321
Query: 610 ENPYGAY--NRLIRLQETCKESEKSAVNNSDSDNQPFASPKIT 650
Y + +R + K + P++
Sbjct: 322 NEFLQGYLKDENVRFRPYEIRFTKLSERVDVERETLVEYPRLV 364
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 5e-27
Identities = 51/231 (22%), Positives = 93/231 (40%), Gaps = 26/231 (11%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR-----FYD-PSSGH 1069
+Y + G + +VG +G+GK+T + +L + S
Sbjct: 97 CVHRYGVN---AFVLYRLPIVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWD 153
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVS---QEPVLFSDTI----RANIAEMANANGFISGLQE 1122
+ +LQ + R + G + + + D + + + E+ + +E
Sbjct: 154 NVIRAFRGNELQNYFERLKNGEIRPVVKPQ--YVDLLPKAVKGKVRELLKKVDEVGKFEE 211
Query: 1123 GYDTL----VGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDAL 1177
L V +R + QLSGG+ QRVAIA A++++ DE +S LDI V +
Sbjct: 212 VVKELELENVLDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVI 271
Query: 1178 DQVMVDRTTLVVA-HRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226
++ + ++V H L+ + + +I VV G G T+NGI
Sbjct: 272 RRLANEGKAVLVVEHDLAVLDYLSDVIHVV-YGEPGVYGIFSKPKGTRNGI 321
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 2e-31
Identities = 46/199 (23%), Positives = 86/199 (43%), Gaps = 14/199 (7%)
Query: 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093
G+ I ++G +G GK+T +L G +T + + + G V
Sbjct: 289 GEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQILSYKPQRIFPNYDGTVQ 348
Query: 1094 QEPVLFSDTIRANIAEMANANGFIS---GLQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150
Q + + ++ + ++ L ++ V + LSGG+ Q++ IA +
Sbjct: 349 Q---YLENASKDALSTSSWFFEEVTKRLNLHRLLESNVND----LSGGELQKLYIAATLA 401
Query: 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQ 1207
KE + +LD+ +S LD+E +V A+ +V +R T ++ H LS A I V +
Sbjct: 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVF-K 460
Query: 1208 GMIVEKGSHESLISTKNGI 1226
G + G S ++ K G+
Sbjct: 461 GEPEKAGLATSPVTLKTGM 479
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 4e-29
Identities = 43/226 (19%), Positives = 85/226 (37%), Gaps = 35/226 (15%)
Query: 397 RPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL 456
+ + L G I ++G +G GK+T ++ G V +
Sbjct: 278 KLGDFQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEKQI------ 331
Query: 457 KWIREKIGLVSQEP-----VLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQ 511
+ K + L ++ +D ++ + + + N +++
Sbjct: 332 --LSYKPQRIFPNYDGTVQQYLENASKDALS-----TSSWFFEEVTKRLNLHRLLESNVN 384
Query: 512 GLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM- 570
LSGG+ Q++ IA + K+ + +LD+ +S LD E +V +A+ RV
Sbjct: 385 -----------DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTR 433
Query: 571 -INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHS--ELLENP 612
T I+ H LS+ A+ I V +G+ + G + L+
Sbjct: 434 ERKAVTFIIDHDLSIHDYIADRIIVF-KGEPEKAGLATSPVTLKTG 478
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 6e-28
Identities = 45/240 (18%), Positives = 94/240 (39%), Gaps = 33/240 (13%)
Query: 388 KDVNFSYPARPDEQILNGFCLLIPN-GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446
+V Y F L P TI ++G +G GK+TV+ ++ P G+
Sbjct: 3 GEVIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGD--P 56
Query: 447 DGVNLKEFQLKWIR-EKIGLVSQEPVLLSSSIR--------DNIA------YGKTHATKE 491
+ K+ LK R ++I +E S+ ++ + + + +
Sbjct: 57 NSKVGKDEVLKRFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID 114
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551
E E + + NL + + LSGG QR+ +A +++++ + + D+ +
Sbjct: 115 ERGKKDEVKELLN-MTNL---WNKDAN----ILSGGGLQRLLVAASLLREADVYIFDQPS 166
Query: 552 SALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610
S LD + +A+ ++ N+ ++V H L ++ ++I +I V
Sbjct: 167 SYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGESSVYGRVSKSYAA 226
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-26
Identities = 43/234 (18%), Positives = 99/234 (42%), Gaps = 31/234 (13%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIP-PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074
V +Y + F+ L P + ++G++G GK+TV+ +L P+ G
Sbjct: 5 VIHRY----KVNGFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKV 60
Query: 1075 VEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA--------NIAEMANA--NGFISGLQEG- 1123
+ + L+ ++ +++ +E +S+ ++ ++ N ++ + E
Sbjct: 61 GKDEVLK-RFRGKEIYNYFKEL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKIDERG 117
Query: 1124 -YDTLVGERGV---------QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
D + + LSGG QR+ +A ++++E + + D+ +S LD+ +
Sbjct: 118 KKDEVKELLNMTNLWNKDANILSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNM 177
Query: 1174 QDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGI 1226
A+ +++ ++ +VV H L + LI ++ G G + + GI
Sbjct: 178 AKAIRELLKNKYVIVVDHDLIVLDYLTDLIHII-YGESSVYGRVSKSYAARVGI 230
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-30
Identities = 69/246 (28%), Positives = 115/246 (46%), Gaps = 41/246 (16%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE V YP + + G I G + L+G SGSGK+T++ LI P G+V
Sbjct: 15 IEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDV 72
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYG--KTHATKEEIQAAAE 498
I G + L + +GLV Q + ++ DN+++G + K+E+ A
Sbjct: 73 WIGGKRVT--DLPPQKRNVGLVFQNYALFQHM---TVYDNVSFGLREKRVPKDEMDARVR 127
Query: 499 AA----NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
+ P +LSGGQ+QRVA+ARA+ P++LL DE +A+
Sbjct: 128 ELLRFMRLESYANRFPH-----------ELSGGQQQRVALARALAPRPQVLLFDEPFAAI 176
Query: 555 DSESGRMVQEAL----DRVMINRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHS 606
D++ R ++ + D + + T+V V+H L + A+ + V+ +G + + GT
Sbjct: 177 DTQIRRELRTFVRQVHDEMGV--TSVFVTHDQEEALEV---ADRVLVLHEGNVEQFGTPE 231
Query: 607 ELLENP 612
E+ E P
Sbjct: 232 EVYEKP 237
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 111 bits (281), Expect = 1e-26
Identities = 49/192 (25%), Positives = 82/192 (42%), Gaps = 41/192 (21%)
Query: 1000 TGRTLENVMGE--VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVIS 1057
G + G ++F+ V YP R + I G+ + L+G SGSGK+T++
Sbjct: 2 RGHHHHHHHGSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILR 59
Query: 1058 LLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIA-------- 1108
L+ P+ G + + G + L + ++ +G+V Q LF T+ N++
Sbjct: 60 LIAGLERPTKGDVWIGGKRVTDLPPQ--KRNVGLVFQNYALFQHMTVYDNVSFGLREKRV 117
Query: 1109 -------------EMANANGFISGLQEGYDTLVGERGV-QLSGGQKQRVAIARAIVKEPK 1154
+ R +LSGGQ+QRVA+ARA+ P+
Sbjct: 118 PKDEMDARVRELLRFMRLESY------------ANRFPHELSGGQQQRVALARALAPRPQ 165
Query: 1155 ILLLDEATSALD 1166
+LL DE +A+D
Sbjct: 166 VLLFDEPFAAID 177
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 119 bits (300), Expect = 3e-30
Identities = 68/210 (32%), Positives = 101/210 (48%), Gaps = 33/210 (15%)
Query: 417 ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQE----PVL 472
L+G +G+GKS + LI P GEV ++G ++ L R IG V Q+ P L
Sbjct: 28 VLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYALFPHL 85
Query: 473 LSSSIRDNIAYGKTHATKEEIQAAAEAA----NASHFIKNLPQGLDTNVGEHGIQLSGGQ 528
S+ NIAYG + + E +H + P +LSGG+
Sbjct: 86 ---SVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPA-----------RLSGGE 131
Query: 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIVSH----RL 582
+QRVA+ARA++ PR+LLLDE SA+D ++ ++ E L V + + V+H
Sbjct: 132 RQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAA 191
Query: 583 SLIRNANIIAVIQQGKIVEKGTHSELLENP 612
L A+ +AV+ G+IVEKG EL
Sbjct: 192 ML---ADEVAVMLNGRIVEKGKLKELFSAK 218
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 105 bits (265), Expect = 1e-25
Identities = 64/205 (31%), Positives = 99/205 (48%), Gaps = 35/205 (17%)
Query: 1034 LTIPPGKT-IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092
+ G+ L+G +G+GKS + L+ P G + L+G +I L + R+ +G V
Sbjct: 18 VDFEMGRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFV 75
Query: 1093 SQEPVLF-----------------SDTIRANIAEMANANGFISGLQEGYDTLVGERGVQL 1135
Q+ LF + EMA G I+ L + +L
Sbjct: 76 PQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLG-IAHLLDRKPA-------RL 127
Query: 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLVVAHRL 1193
SGG++QRVA+ARA+V +P++LLLDE SA+D++++ V+ + L Q D L V H L
Sbjct: 128 SGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDL 187
Query: 1194 S---TIKNAHLIAVVSQGMIVEKGS 1215
+ A +AV+ G IVEKG
Sbjct: 188 IEAAML--ADEVAVMLNGRIVEKGK 210
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 1e-29
Identities = 59/248 (23%), Positives = 102/248 (41%), Gaps = 44/248 (17%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ ++++ F Y A + + G I A++G +G GKST++ L+ + P G++
Sbjct: 5 LSVENLGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKI 62
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT-H------ATKEEIQAA 496
+ IG V Q + S+ D + G++ H + Q A
Sbjct: 63 EVYQ-------------SIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVA 109
Query: 497 AEA---ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553
+A N +H LSGGQ+Q + IARA+ + +++LLDE TSA
Sbjct: 110 MQALDYLNLTHLA-------KREFTS----LSGGQRQLILIARAIASECKLILLDEPTSA 158
Query: 554 LDSESGRMVQEALDRVMI--NRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGTH----S 606
LD + +V L + N T V +H+ + + AN ++ + T S
Sbjct: 159 LDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKFGETRNILTS 218
Query: 607 ELLENPYG 614
E L +
Sbjct: 219 ENLTALFH 226
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 1e-25
Identities = 55/235 (23%), Positives = 100/235 (42%), Gaps = 50/235 (21%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+ F Y +F+ L + G +A++G++G GKST++ LL + P G I +
Sbjct: 10 LGFYYQAEN--FLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEVY-- 65
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVL-FSDTIR---------------------ANIAEMANA 1113
Q +G V Q F+ ++ +A A
Sbjct: 66 -----------QSIGFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALD 114
Query: 1114 NGFISGLQEGYDTLVGERGV-QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
++ L + R LSGGQ+Q + IARAI E K++LLDE TSALD+ ++ +
Sbjct: 115 YLNLTHLAK--------REFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLANQDI 166
Query: 1173 VQDALDQVMVD--RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224
V L + T + H+ + + A+ ++++ G ++++++N
Sbjct: 167 VLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQNFKF-GETRNILTSEN 220
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 120 bits (304), Expect = 1e-29
Identities = 64/241 (26%), Positives = 114/241 (47%), Gaps = 36/241 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++ ++ + L+ L + +G ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYG---KTHATKEEIQAAA 497
L+DG ++ L + I V Q P + +++ N+ +G K + + A
Sbjct: 58 LLDGKDVT--DLSPEKHDIAFVYQNYSLFPHM---NVKKNLEFGMRMKKIKDPKRVLDTA 112
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
H + P LSGG++QRVA+ARA++ +P+ILLLDE SALD
Sbjct: 113 RDLKIEHLLDRNPL-----------TLSGGEQQRVALARALVTNPKILLLDEPLSALDPR 161
Query: 558 SGRMVQEALDRV--MINRTTVIVSH----RLSLIRNANIIAVIQQGKIVEKGTHSELLEN 611
+ +E L + T + ++H + A+ IAV+ GK+++ G E+ E
Sbjct: 162 TQENAREMLSVLHKKNKLTVLHITHDQTEARIM---ADRIAVVMDGKLIQVGKPEEIFEK 218
Query: 612 P 612
P
Sbjct: 219 P 219
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 106 bits (267), Expect = 9e-25
Identities = 48/154 (31%), Positives = 75/154 (48%), Gaps = 28/154 (18%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+L L + G+ ++G +G+GK+ + L+ F+ P SG I LDG ++ L + + +
Sbjct: 17 DNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDI 74
Query: 1090 GVVSQEPVLFSD-TIRANIAEMANANGFISGL-QEGYD---------TLVGERGV----- 1133
V Q LF ++ N+ F G+ + + +
Sbjct: 75 AFVYQNYSLFPHMNVKKNLE-------F--GMRMKKIKDPKRVLDTARDLKIEHLLDRNP 125
Query: 1134 -QLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGG++QRVA+ARA+V PKILLLDE SALD
Sbjct: 126 LTLSGGEQQRVALARALVTNPKILLLDEPLSALD 159
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 3e-29
Identities = 64/233 (27%), Positives = 109/233 (46%), Gaps = 24/233 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ +KD+ ++IL G I G I L+G +G+GK+T + +I P +G V
Sbjct: 16 VVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIV 72
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIA-----YG-KTHATKEEIQAAA 497
+ G N+ E + +R+ I + +E + + + Y + +E ++ A
Sbjct: 73 TVFGKNVVE-EPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERAT 131
Query: 498 EAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
E A IK+ S G +++ IARA++ +PR+ +LDE TS LD
Sbjct: 132 EIAGLGEKIKDRVSTY-----------SKGMVRKLLIARALMVNPRLAILDEPTSGLDVL 180
Query: 558 SGRMVQEALDRVMINRTTVIVS-HRLSLI-RNANIIAVIQQGKIVEKGTHSEL 608
+ R V++ L + T++VS H + + + IA+I G IVE GT EL
Sbjct: 181 NAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEEL 233
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 7e-28
Identities = 52/213 (24%), Positives = 97/213 (45%), Gaps = 22/213 (10%)
Query: 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089
+ + I G+ L+G +G+GK+T + ++ PSSG +T+ G + + + +R+ +
Sbjct: 32 KGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKLI 90
Query: 1090 GVVSQEPVLFSD-TIRANIAEMANANGF--------------ISGLQEGYDTLVGERGVQ 1134
+ +E + + + +A I+GL E V
Sbjct: 91 SYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVST---- 146
Query: 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV-AHRL 1193
S G +++ IARA++ P++ +LDE TS LD+ + R V+ L Q + T++V +H +
Sbjct: 147 YSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNM 206
Query: 1194 STI-KNAHLIAVVSQGMIVEKGSHESLISTKNG 1225
+ IA++ G IVE G+ E L
Sbjct: 207 LEVEFLCDRIALIHNGTIVETGTVEELKERYKA 239
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 115 bits (291), Expect = 7e-29
Identities = 55/251 (21%), Positives = 98/251 (39%), Gaps = 43/251 (17%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L+DV + L + G I LVG +G+GKST+++ + G +
Sbjct: 5 MQLQDVA-------ESTRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 56
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT-HATKEEIQAAAEAANA 502
G L+ + + +SQ+ + + + + E + A A
Sbjct: 57 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL 116
Query: 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM-------IKDPRILLLDEATSALD 555
L + QLSGG+ QRV +A + ++LLLDE ++LD
Sbjct: 117 DDK-------LGRSTN----QLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLD 165
Query: 556 SESGRMVQEALDRVM-----INRTTVIVSHRLSL-IRNANIIAVIQQGKIVEKGT----- 604
Q ALD+++ V+ SH L+ +R+A+ +++ GK++ G
Sbjct: 166 VAQ----QSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVL 221
Query: 605 HSELLENPYGA 615
L YG
Sbjct: 222 TPPNLAQAYGM 232
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 109 bits (274), Expect = 1e-26
Identities = 42/212 (19%), Positives = 82/212 (38%), Gaps = 32/212 (15%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086
L + G+ + LVG +G+GKST+++ + G I G ++ L
Sbjct: 14 TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLA 72
Query: 1087 QQMGVVSQEPVL-FSDTIR------------ANIAEMANANGFISGLQEGYDTLVGERGV 1133
+SQ+ F+ + + + R
Sbjct: 73 LHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKL--------GRST 124
Query: 1134 -QLSGGQKQRVAIARAIV-------KEPKILLLDEATSALDIESERVVQDALDQVMVD-R 1184
QLSGG+ QRV +A ++ ++LLLDE ++LD+ + + L +
Sbjct: 125 NQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGL 184
Query: 1185 TTLVVAHRLS-TIKNAHLIAVVSQGMIVEKGS 1215
++ +H L+ T+++AH ++ G ++ G
Sbjct: 185 AIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 216
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 4e-28
Identities = 69/254 (27%), Positives = 117/254 (46%), Gaps = 49/254 (19%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I +K+V+ + L+ + I NG ++G SG+GK+T + +I P GE
Sbjct: 3 RIIVKNVSKVFKK-GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGE 61
Query: 444 VLIDGVNLKEFQLKWIREK---IGLVSQE----PVLLSSSIRDNIAYG--KTHATKEEIQ 494
+ D + + + IG+V Q P L + +NIA+ +KEEI+
Sbjct: 62 LYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL---TAFENIAFPLTNMKMSKEEIR 118
Query: 495 A----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
A+ + H + + P+ +LSG Q+QRVA+ARA++KDP +LLLDE
Sbjct: 119 KRVEEVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEP 167
Query: 551 TSALD--------SESGRMVQEALDRVMINRTTVIVSH----RLSLIRNANIIAVIQQGK 598
S LD + + + T ++VSH ++ A+ + V+ +GK
Sbjct: 168 FSNLDARMRDSARALVKEVQSR------LGVTLLVVSHDPADIFAI---ADRVGVLVKGK 218
Query: 599 IVEKGTHSELLENP 612
+V+ G +L +NP
Sbjct: 219 LVQVGKPEDLYDNP 232
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 2e-20
Identities = 46/181 (25%), Positives = 81/181 (44%), Gaps = 31/181 (17%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + VS + + ++ + I G+ ++G SG+GK+T + ++ PS+
Sbjct: 1 MVRIIVKNVSKVFKKGK-VVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1068 GHITLDGVEIQKLQVKWL---RQQMGVVSQEPVLF-------------------SDTIRA 1105
G + D + + +++G+V Q L+ + IR
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165
+ E+A I + ++ +LSG Q+QRVA+ARA+VK+P +LLLDE S L
Sbjct: 120 RVEEVAK----ILDIHH----VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 1166 D 1166
D
Sbjct: 172 D 172
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 2e-23
Identities = 83/256 (32%), Positives = 126/256 (49%), Gaps = 60/256 (23%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+I+L+++ + + LN L I +G AL+G SGSGKST++ I Y P +G+
Sbjct: 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGK 59
Query: 444 VLIDG--VNL---KEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYG--KTHATKEE 492
+ D V K+ R +GLV Q P + ++ NIA+ A +EE
Sbjct: 60 IYFDEKDVTELPPKD------RN-VGLVFQNWALYPHM---TVYKNIAFPLELRKAPREE 109
Query: 493 IQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLD 548
I A+ + + P QLSGGQ+QRVAIARA++K+P +LLLD
Sbjct: 110 IDKKVREVAKMLHIDKLLNRYPW-----------QLSGGQQQRVAIARALVKEPEVLLLD 158
Query: 549 EATSALD--------SESGRMVQEALDRVMINRTTVIVSH----RLSLIRNANIIAVIQQ 596
E S LD +E R+ +E + TTV V+H L++ A+ IAVI++
Sbjct: 159 EPLSNLDALLRLEVRAELKRLQKE------LGITTVYVTHDQAEALAM---ADRIAVIRE 209
Query: 597 GKIVEKGTHSELLENP 612
G+I++ GT E+ P
Sbjct: 210 GEILQVGTPDEVYYKP 225
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 86.1 bits (214), Expect = 6e-18
Identities = 55/184 (29%), Positives = 85/184 (46%), Gaps = 44/184 (23%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M E++ + K+ ++ L I G+ +AL+G SGSGKST++ + Y P+S
Sbjct: 1 MVEIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTS 57
Query: 1068 GHITLDGVEIQKLQVK-----------------WLRQQMGVVSQEPVLFS--------DT 1102
G I D ++ +L K + + + F +
Sbjct: 58 GKIYFDEKDVTELPPKDRNVGLVFQNWALYPHMTVYKNIA--------FPLELRKAPREE 109
Query: 1103 IRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162
I + E+A + + + L+ QLSGGQ+QRVAIARA+VKEP++LLLDE
Sbjct: 110 IDKKVREVAK----MLHIDK----LLNRYPWQLSGGQQQRVAIARALVKEPEVLLLDEPL 161
Query: 1163 SALD 1166
S LD
Sbjct: 162 SNLD 165
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 95.7 bits (239), Expect = 3e-21
Identities = 72/259 (27%), Positives = 121/259 (46%), Gaps = 66/259 (25%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I + ++ + + ++G + +G AL+G SG GK+T + ++ Y P +GE
Sbjct: 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGE 59
Query: 444 VLIDG--VNL---KEFQLKWIREKIGLVSQEPVLLSS-------SIRDNIAYG--KTHAT 489
+ D VN K RE +G+V Q + ++ +NIA+ +
Sbjct: 60 IYFDDVLVNDIPPKY------RE-VGMVFQ------NYALYPHMTVFENIAFPLRARRIS 106
Query: 490 KEEIQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
K+E++ A + + P QLSGGQ+QRVA+ARA++K P++L
Sbjct: 107 KDEVEKRVVEIARKLLIDNLLDRKPT-----------QLSGGQQQRVALARALVKQPKVL 155
Query: 546 LLDEATSALD--------SESGRMVQEALDRVMINRTTVIVSH----RLSLIRNANIIAV 593
L DE S LD +E + QE + T+V V+H +++ A+ IAV
Sbjct: 156 LFDEPLSNLDANLRMIMRAEIKHLQQE------LGITSVYVTHDQAEAMTM---ASRIAV 206
Query: 594 IQQGKIVEKGTHSELLENP 612
QGK+V+ GT E+ ++P
Sbjct: 207 FNQGKLVQYGTPDEVYDSP 225
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 80.3 bits (199), Expect = 5e-16
Identities = 50/184 (27%), Positives = 81/184 (44%), Gaps = 44/184 (23%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M ++ + + KY ++ + + G+ +AL+G SG GK+T + +L Y P+S
Sbjct: 1 MPSIRVVNLK-KYF--GKVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTS 57
Query: 1068 GHITLDGVEIQKLQVK-----------------WLRQQMGVVSQEPVLFS--------DT 1102
G I D V + + K + + + F D
Sbjct: 58 GEIYFDDVLVNDIPPKYREVGMVFQNYALYPHMTVFENIA--------FPLRARRISKDE 109
Query: 1103 IRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162
+ + E+A + L+ + QLSGGQ+QRVA+ARA+VK+PK+LL DE
Sbjct: 110 VEKRVVEIAR----KLLIDN----LLDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPL 161
Query: 1163 SALD 1166
S LD
Sbjct: 162 SNLD 165
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 92.7 bits (231), Expect = 5e-20
Identities = 63/265 (23%), Positives = 112/265 (42%), Gaps = 72/265 (27%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+ L DV + + + L + +G L+G SG GK+T + +I +P G+
Sbjct: 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 444 VLIDG--VNLKEFQLKWIREK---IGLVSQEPVLLSS-------SIRDNIAYG-KTHAT- 489
+ I V + ++ K I +V Q S ++ DNIA+ K
Sbjct: 60 IYIGDKLVA-DPEKGIFVPPKDRDIAMVFQ------SYALYPHMTVYDNIAFPLKLRKVP 112
Query: 490 KEEIQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
++EI AE + + P+ +LSGGQ+QRVA+ RA+++ P++
Sbjct: 113 RQEIDQRVREVAELLGLTELLNRKPR-----------ELSGGQRQRVALGRAIVRKPQVF 161
Query: 546 LLDEATSALD--------SESGRMVQEALDRVMINRTTVIVSH----------RLSLIRN 587
L+DE S LD +E ++ ++ + TT+ V+H R
Sbjct: 162 LMDEPLSNLDAKLRVRMRAELKKLQRQ------LGVTTIYVTHDQVEAMTMGDR------ 209
Query: 588 ANIIAVIQQGKIVEKGTHSELLENP 612
IAV+ +G + + G+ E+ + P
Sbjct: 210 ---IAVMNRGVLQQVGSPDEVYDKP 231
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 79.6 bits (197), Expect = 9e-16
Identities = 45/190 (23%), Positives = 77/190 (40%), Gaps = 50/190 (26%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M V+ + V + + R++ L + G+ + L+G SG GK+T + ++ +PS
Sbjct: 1 MAGVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
Query: 1068 GHITLDGVEIQKLQVKWL-----------------------RQQMGVVSQEPVLFS---- 1100
G I + + + + F
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIA--------FPLKLR 109
Query: 1101 ----DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156
I + E+A + GL E L+ + +LSGGQ+QRVA+ RAIV++P++
Sbjct: 110 KVPRQEIDQRVREVAE----LLGLTE----LLNRKPRELSGGQRQRVALGRAIVRKPQVF 161
Query: 1157 LLDEATSALD 1166
L+DE S LD
Sbjct: 162 LMDEPLSNLD 171
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 91.9 bits (229), Expect = 8e-20
Identities = 67/256 (26%), Positives = 119/256 (46%), Gaps = 60/256 (23%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+++L+++ + + +N L I +G L+G SG GK+T + +I +P G
Sbjct: 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 67
Query: 444 VLIDG--VNL---KEFQLKWIREKIGLVSQE----PVLLSSSIRDNIAYG-KTHAT-KEE 492
+ V K+ R I +V Q P + ++ +NIA+ K K+E
Sbjct: 68 IYFGDRDVTYLPPKD------RN-ISMVFQSYAVWPHM---TVYENIAFPLKIKKFPKDE 117
Query: 493 IQA----AAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLD 548
I AAE + P QLSGGQ+QRVA+ARA++ +P +LL+D
Sbjct: 118 IDKRVRWAAELLQIEELLNRYPA-----------QLSGGQRQRVAVARAIVVEPDVLLMD 166
Query: 549 EATSALD--------SESGRMVQEALDRVMINRTTVIVSH----RLSLIRNANIIAVIQQ 596
E S LD +E ++ Q+ + TT+ V+H +++ + IAV+ +
Sbjct: 167 EPLSNLDAKLRVAMRAEIKKLQQK------LKVTTIYVTHDQVEAMTM---GDRIAVMNR 217
Query: 597 GKIVEKGTHSELLENP 612
G++++ G+ +E+ P
Sbjct: 218 GQLLQIGSPTEVYLRP 233
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 81.1 bits (201), Expect = 3e-16
Identities = 50/184 (27%), Positives = 78/184 (42%), Gaps = 44/184 (23%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M EV+ ++ ++ L LTI G+ + L+G SG GK+T + ++ +P+
Sbjct: 9 MVEVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 65
Query: 1068 GHITLDGVEIQKLQVK-----------------WLRQQMGVVSQEPVLFS--------DT 1102
G I ++ L K + + + F D
Sbjct: 66 GRIYFGDRDVTYLPPKDRNISMVFQSYAVWPHMTVYENIA--------FPLKIKKFPKDE 117
Query: 1103 IRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162
I + A + ++E L+ QLSGGQ+QRVA+ARAIV EP +LL+DE
Sbjct: 118 IDKRVRWAAE----LLQIEE----LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPL 169
Query: 1163 SALD 1166
S LD
Sbjct: 170 SNLD 173
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 6e-18
Identities = 54/229 (23%), Positives = 100/229 (43%), Gaps = 36/229 (15%)
Query: 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG---VNLKEFQLKWI 459
L+G + + G + ++G +GSGKST+I++I F G V + N + +L
Sbjct: 23 LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELY-- 80
Query: 460 REKIGLVS--QEPVLLSS-SIRDNIAYGKTHATK-------------EEIQAAAEAANAS 503
G+V Q P L ++ +N+ G+ + +E + +A
Sbjct: 81 --HYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKIL 138
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT----SALDSESG 559
F+ L +LSGGQ + V I RA++ +P+++++DE L +
Sbjct: 139 EFL-----KLSHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIF 193
Query: 560 RMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
V E + T +I+ HRL ++ N + + V+ G+I+ +G E
Sbjct: 194 NHVLELKAK---GITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 75.2 bits (186), Expect = 5e-15
Identities = 34/156 (21%), Positives = 64/156 (41%), Gaps = 27/156 (17%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
+ +++ G ++G +GSGKST+I+++ F G + + +I + G
Sbjct: 25 GVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP-AELYHYG 83
Query: 1091 VVS--QEPVLFSD-TIRANI---AEMANANGFISGL------QE--------------GY 1124
+V Q P + T+ N+ + S +E
Sbjct: 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKL 143
Query: 1125 DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
L + +LSGGQ + V I RA++ PK++++DE
Sbjct: 144 SHLYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDE 179
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 84.1 bits (209), Expect = 3e-17
Identities = 72/264 (27%), Positives = 111/264 (42%), Gaps = 76/264 (28%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
++L++V ++ + + L I G VG SG GKST++ +I +G+
Sbjct: 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 59
Query: 444 VLIDG--VNL---KEFQLKWIREKIGLVSQEPVLLSS-------SIRDNIAYG-K-THAT 489
+ I +N E R +G+V Q S S+ +N+++G K A
Sbjct: 60 LFIGEKRMNDTPPAE------RG-VGMVFQ------SYALYPHLSVAENMSFGLKLAGAK 106
Query: 490 KEEI----QAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545
KE I AE +H + P+ LSGGQ+QRVAI R ++ +P +
Sbjct: 107 KEVINQRVNQVAEVLQLAHLLDRKPK-----------ALSGGQRQRVAIGRTLVAEPSVF 155
Query: 546 LLDEATSALDSESGRMVQEALDRV-M----------INRTTVIVSH------RLSLIRNA 588
LLDE S LD+ AL RV M + RT + V+H L A
Sbjct: 156 LLDEPLSNLDA--------AL-RVQMRIEISRLHKRLGRTMIYVTHDQVEAMTL-----A 201
Query: 589 NIIAVIQQGKIVEKGTHSELLENP 612
+ I V+ G++ + G EL P
Sbjct: 202 DKIVVLDAGRVAQVGKPLELYHYP 225
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 2e-10
Identities = 21/33 (63%), Positives = 24/33 (72%)
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166
LSGGQ+QRVAI R +V EP + LLDE S LD
Sbjct: 133 ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLD 165
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 80.6 bits (200), Expect = 7e-17
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 38/244 (15%)
Query: 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445
E++ ++ Y A + G L +P G I L+G +G+GK+T +S I Q G+++
Sbjct: 8 EVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 446 IDGVNLKEFQLKWI-REKIGLVSQE----PVLLSSSIRDNIAYGK-THATKEEIQAAAEA 499
+G ++ I R I LV + P L ++ +N+ G KE I+ E
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPEL---TVYENLMMGAYNRKDKEGIKRDLEW 121
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
S F P+ L + + G LSGG++Q +AI RA++ P++L++DE + L +
Sbjct: 122 I-FSLF----PR-LKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGL---AP 172
Query: 560 RMVQEALDRV-MINR--TTVIVSHRLSLI-RNANI---IA----VIQQGKIVEKGTHSEL 608
+V E + + IN+ TT++ L+ +NA +A V++ G+IV +G SEL
Sbjct: 173 ILVSEVFEVIQKINQEGTTIL------LVEQNALGALKVAHYGYVLETGQIVLEGKASEL 226
Query: 609 LENP 612
L+N
Sbjct: 227 LDNE 230
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 78.3 bits (194), Expect = 4e-16
Identities = 41/151 (27%), Positives = 73/151 (48%), Gaps = 18/151 (11%)
Query: 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084
I + + L +P G+ + L+G +G+GK+T +S + G I +G +I
Sbjct: 18 AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA-H 76
Query: 1085 LRQQMGVVSQEP---VLFSD-TIRANIAEM-----ANANGFISGLQEGYDTL--VGERGV 1133
+ +MG+ P +F + T+ N+ M + G L+ + + ER
Sbjct: 77 VINRMGIA-LVPEGRRIFPELTVYENL-MMGAYNRKDKEGIKRDLEWIFSLFPRLKERLK 134
Query: 1134 Q----LSGGQKQRVAIARAIVKEPKILLLDE 1160
Q LSGG++Q +AI RA++ PK+L++DE
Sbjct: 135 QLGGTLSGGEQQMLAIGRALMSRPKLLMMDE 165
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 83.5 bits (206), Expect = 3e-16
Identities = 57/270 (21%), Positives = 107/270 (39%), Gaps = 34/270 (12%)
Query: 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILN 404
++ F + A E R + N +D D+ + + +Y A+ +LN
Sbjct: 396 MTIFLHEKKAKDILDEFRKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLN 452
Query: 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464
L + + G +G GKST++ I A +DG +E +
Sbjct: 453 KTQLRLKRARRYGICGPNGCGKSTLMRAI-------ANG-QVDGFPTQE------ECRTV 498
Query: 465 LVSQEPVLLSS--SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522
V + S S+ D + + +A + F + + +
Sbjct: 499 YVEHDIDGTHSDTSVLDFV----FESGVGTKEAIKDKLIEFGF---TDEMIAMPISA--- 548
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582
LSGG K ++A+ARA++++ ILLLDE T+ LD+ + + L+ T++ +SH
Sbjct: 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDS 605
Query: 583 SLIRN-ANIIAVIQQGKIVE-KGTHSELLE 610
+ N I + K+ + KG +E ++
Sbjct: 606 VFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 82.8 bits (204), Expect = 4e-16
Identities = 54/331 (16%), Positives = 111/331 (33%), Gaps = 44/331 (13%)
Query: 868 EASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFM 927
EA +V A+ ++R V + ++ + AG + + L
Sbjct: 310 EAREVTLRALKTLRRVGNVGEDDAI--------PELSHAGDVSTTLQVVNELLKDETVAP 361
Query: 928 AYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGL 987
+ + A + + +F + + K + +
Sbjct: 362 RFKIVVEYIAAIGADLIDERIIDQQAWFTHITPYM---------TIFLHEKKAKDILDEF 412
Query: 988 IDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGE 1047
+ E+ ++ S Y + + L + + + G
Sbjct: 413 RKRAVDNIPVGPNFDDEEDEGEDLCNCEFSLAYGAKI---LLNKTQLRLKRARRYGICGP 469
Query: 1048 SGSGKSTVISLLQRFYDPSSGHITLDGVEIQK-LQVKWLRQQM-GVVSQEPVL-----FS 1100
+G GKST++ + + +DG Q+ + ++ + G S VL
Sbjct: 470 NGCGKSTLMRAI--------ANGQVDGFPTQEECRTVYVEHDIDGTHSDTSVLDFVFESG 521
Query: 1101 DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
+ I + GF E + LSGG K ++A+ARA+++ ILLLDE
Sbjct: 522 VGTKEAIKDKLIEFGF---TDEMIAMPISA----LSGGWKMKLALARAVLRNADILLLDE 574
Query: 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAH 1191
T+ LD + + + L+ T++ ++H
Sbjct: 575 PTNHLDTVNVAWLVNYLNT--CGITSITISH 603
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 68.9 bits (168), Expect = 8e-12
Identities = 22/82 (26%), Positives = 42/82 (51%), Gaps = 3/82 (3%)
Query: 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582
LSGGQK ++ +A + P +++LDE T+ LD +S + +AL +I++H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITHSA 958
Query: 583 SLIRN-ANIIAVIQQGKIVEKG 603
+N + ++ G++ G
Sbjct: 959 EFTKNLTEEVWAVKDGRMTPSG 980
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 60.8 bits (147), Expect = 3e-09
Identities = 22/97 (22%), Positives = 44/97 (45%), Gaps = 13/97 (13%)
Query: 1134 QLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRL 1193
LSGGQK ++ +A + P +++LDE T+ LD +S + AL + + +++ H
Sbjct: 901 GLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE--FEGGVIIITH-- 956
Query: 1194 STIKNAHLI-AVVSQGMIVEKGSHESLISTKNGIYTS 1229
+A + + V+ G ++ + S
Sbjct: 957 ----SAEFTKNLTEEVWAVKDGR----MTPSGHNWVS 985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 48.5 bits (115), Expect = 1e-05
Identities = 18/85 (21%), Positives = 37/85 (43%), Gaps = 12/85 (14%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+++ ++ F YP + + + A++G +G+GKST+I+++ P +GEV
Sbjct: 672 VKVTNMEFQYPG-TSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEV 730
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQE 469
N +I + Q
Sbjct: 731 YT-HENC----------RIAYIKQH 744
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 46.6 bits (110), Expect = 6e-05
Identities = 17/58 (29%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Query: 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072
+ F+YP D+ IA++G +G+GKST+I++L P+SG +
Sbjct: 676 NMEFQYPGTSKP-QITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYT 732
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 71.8 bits (175), Expect = 1e-12
Identities = 74/562 (13%), Positives = 158/562 (28%), Gaps = 191/562 (33%)
Query: 397 RPDE--QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLID-GVNLK- 452
R ++ L P + + G GSGK+ V A +V + V K
Sbjct: 133 RLQPYLKLRQALLELRPAKNVL-IDGVLGSGKTWV-----------ALDVCLSYKVQCKM 180
Query: 453 EFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQG 512
+F++ W+ + + +L + + Y Q + S N+
Sbjct: 181 DFKIFWL--NLKNCNSPETVL--EMLQKLLY----------QIDPNWTSRSDHSSNIKLR 226
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKD---PRILL-LDEATSALDSESGRMVQEALD- 567
+ + + + R ++K LL L + ++ + A +
Sbjct: 227 IHS------------IQAEL---RRLLKSKPYENCLLVLL------NVQNAKAW-NAFNL 264
Query: 568 --RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVE-------KG-THSELLE------- 610
++++ TT R + + T E+
Sbjct: 265 SCKILL--TT----------RFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 611 -------------NPY-----GAY--NRLIRLQ-------ETCKESEKSAVNNSDSDN-- 641
NP + L + +S++N +
Sbjct: 313 CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 642 QPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLL------GAIA 695
+ F + FP A +P + LS + + +++ +
Sbjct: 373 KMFDRLSV-----------FP--PSAHIPTIL-LSLIWFDVIKSDVMVVVNKLHKYSLVE 418
Query: 696 SMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSK---HWALMFVALGAASLLTSPLSMYC 752
I I + L V NE L H H+ + + L+ L Y
Sbjct: 419 KQPKESTISIPSIYLELKVKLENEY--AL--HRSIVDHYNIP-KTFDSDDLIPPYLDQYF 473
Query: 753 FA-----VAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGD 807
++ + + +R+ F V+++ + + ++ D + + G
Sbjct: 474 YSHIGHHLKNIEHPERMTL--FRM-VFLDFRF----------LEQKIRHD-STAWNASGS 519
Query: 808 TLSLLVQ------------NTATAVVGLVIAFKACWQLALLVLAIFPLLGITGH---IQM 852
L+ L Q +V ++ F + I L + + +++
Sbjct: 520 ILNTLQQLKFYKPYICDNDPKYERLVNAILDF---------LPKIEENLICSKYTDLLRI 570
Query: 853 KSMKGFSANAENMYEEA-SQVA 873
A E ++EEA QV
Sbjct: 571 ----ALMAEDEAIFEEAHKQVQ 588
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 67.2 bits (163), Expect = 3e-11
Identities = 92/647 (14%), Positives = 193/647 (29%), Gaps = 216/647 (33%)
Query: 513 LDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572
+D GEH Q V A + + D D + +E +D ++++
Sbjct: 7 MDFETGEH--QYQYKDILSV-FEDAFVDN-----FD-CKDVQDMPKSILSKEEIDHIIMS 57
Query: 573 RTTVIVSHRL-SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI-RLQETCKESE 630
+ V + RL + + +Q ++V+K L N Y L+ ++ ++
Sbjct: 58 KDAVSGTLRLFWTLLS-------KQEEMVQKFVEEVLRIN----YKFLMSPIKTEQRQPS 106
Query: 631 K------SAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSP 684
+ +DNQ FA ++ + + +A L L P
Sbjct: 107 MMTRMYIEQRDRLYNDNQVFAKYNVSRLQP------YLKLRQA-------LLEL----RP 149
Query: 685 EVPALLLGAIASMTNGIIIPIFG--VMLAAMVNTLNEPKEELMRHSKHWALMFVALGAAS 742
L+ G + G G +A V L+ + M W + L
Sbjct: 150 AKNVLIDG----VL-G-----SGKTW-VALDV-CLSYKVQCKMDFKIFW----LNLK--- 190
Query: 743 LLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVR 802
C + +++ ++ + ++ ++ W +DHS+ +L +
Sbjct: 191 --------NCNSPET--VLEMLQKLLYQ----IDPNWTSRSDHSS---NIKLRIHSIQAE 233
Query: 803 SLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANA 862
L L+++ ++ C LLVL
Sbjct: 234 ------LRRLLKSK---------PYENC----LLVL------------------------ 250
Query: 863 ENMYEEASQVASDAVSSIRTVASF---CAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFG 919
V + + +F C K++ + K
Sbjct: 251 ------------LNVQNAKAWNAFNLSC---KILLTTRFK-------------------- 275
Query: 920 LSFFFFFMAYAVTFYVGAKL-----VDHKQATFT--EVFRVFFALSMTAIGISQTSSLAS 972
VT ++ A +DH T T EV + + + L
Sbjct: 276 ----------QVTDFLSAATTTHISLDHHSMTLTPDEVKSLL----LKYLDCR-PQDLPR 320
Query: 973 DASKAKSSAASVFG--LIDQVSKIDSSEYTGR-TLENVMGEVQFLRVSFKYPTRPHIE-- 1027
+ S+ + D ++ D+ ++ L ++ L V R +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIE--SSLNVLEPAEYRKMFDRL 378
Query: 1028 -VFRDLCLTIPPGKTIALV-GESGSGKSTVI-------SLLQRFYDPSSGHITLDGVEIQ 1078
VF IP ++L+ + V+ SL+++ P I++
Sbjct: 379 SVFPP-SAHIPT-ILLSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPS---- 430
Query: 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRA-NIAEMANANGFISGLQEGY 1124
+ ++ L+ + + E L + NI + +++ I + Y
Sbjct: 431 -IYLE-LKVK---LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQY 472
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 65.3 bits (158), Expect = 1e-10
Identities = 44/291 (15%), Positives = 83/291 (28%), Gaps = 74/291 (25%)
Query: 975 SKAKSSAASVFGLIDQ------VSKIDSSEYTGRTLENVMGEVQFLRV-----SF-KYP- 1021
SK + + + +S I +E ++ M Q R+ F KY
Sbjct: 73 SKQEEMVQKFVEEVLRINYKFLMSPI-KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131
Query: 1022 TRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVI-------SLLQRFYDP----SSGH 1069
+R R L + P K + + G GSGK+ V + + + +
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVG 1129
++ LQ L Q+ S I+ I +Q L+
Sbjct: 192 CNSPETVLEMLQK--LLYQIDPNWTSRSDHSSNIKLRIHS----------IQAELRRLLK 239
Query: 1130 ERGVQLSGGQKQRVAIARAIVKEPKILL-LDEATSALDIESERVVQDALD---QVMVDRT 1185
+ LL L ++++ + +A + ++++ T
Sbjct: 240 SK-------------------PYENCLLVLL------NVQNAKAW-NAFNLSCKILL--T 271
Query: 1186 T--LVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234
T V LS H+ + L+ + L P
Sbjct: 272 TRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDL--PR 320
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 64.9 bits (157), Expect = 1e-10
Identities = 108/763 (14%), Positives = 203/763 (26%), Gaps = 254/763 (33%)
Query: 367 EIDLCCVNGKKL-----DDIRGDIELKDV-NFSYPARPDEQ---ILNGFCLLIPNGTIAA 417
E K + D + + KDV + E+ I+ +
Sbjct: 13 EHQYQY---KDILSVFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIM-----SKDAVSGT 64
Query: 418 --LVGT-SGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS 474
L T + V Q+F EVL K++ I ++P +++
Sbjct: 65 LRLFWTLLSKQEEMV----QKFV----EEVL-------RINYKFLMSPIKTEQRQPSMMT 109
Query: 475 SSI--------RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL-----DTNVGEHG 521
DN + K + ++ + L Q L NV G
Sbjct: 110 RMYIEQRDRLYNDNQVFAKYNVSRLQP------------YLKLRQALLELRPAKNVLIDG 157
Query: 522 IQLSGGQKQRVAIARAMIKDPRILLL-------------DEATSALDSESGRMVQEALDR 568
+ SG K VA+ + ++ + + L+ M+Q+ L +
Sbjct: 158 VLGSG--KTWVAL--DVCLSYKVQCKMDFKIFWLNLKNCNSPETVLE-----MLQKLLYQ 208
Query: 569 VMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR-LIRLQETCK 627
+ N T+ H ++ + I + LL++ Y L+ L
Sbjct: 209 IDPNWTS-RSDHSSNIKLRIHSI----------QAELRRLLKSK--PYENCLLVLLNVQN 255
Query: 628 ESEKSAVNNS--------DSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLA 679
+A N S F S TT + S + PD S L
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSM-------TLTPDEVKSLLL 308
Query: 680 -YLNSP--EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFV 736
YL+ ++P TN + I + + T + +H L
Sbjct: 309 KYLDCRPQDLPRE-----VLTTNPRRLSIIAESIRDGLATWDN-----WKHVNCDKL--- 355
Query: 737 ALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFE-------KVVYMEVGWFDEADHSTGA 789
I + ++ + F
Sbjct: 356 -------------------------TTIIESSLNVLEPAEYRKMFDRLSVFPP------- 383
Query: 790 IGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGH 849
A + + LSL+ + + V +V+ + +L+ I+
Sbjct: 384 -SAHIPT----------ILLSLIWFDVIKSDVMVVV--NKLHKYSLVEKQPKEST-ISIP 429
Query: 850 -IQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGI 908
I ++ EN Y + V +F ++ L +
Sbjct: 430 SIYLE----LKVKLENEYALHRSI----VDHYNIPKTFDSD----DLIPPYLDQ------ 471
Query: 909 RQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDH----KQATFTEVFR-VFFALSMTAIG 963
+F+ + + H + +FR VF
Sbjct: 472 -------------YFYSHIGH------------HLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 964 ISQTSSLASDASKAKSSAASVFGLIDQVSK-----IDSSEYTGRTLENVMGEVQFLRVSF 1018
I S+ A +++ S+ + Q+ D+ R + ++ FL
Sbjct: 507 IRHDST-------AWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAIL---DFL---P 553
Query: 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061
K + DL IAL+ E + +QR
Sbjct: 554 KIEENLICSKYTDLL-------RIALMAEDEAIFEEAHKQVQR 589
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.9 bits (126), Expect = 7e-07
Identities = 102/674 (15%), Positives = 199/674 (29%), Gaps = 213/674 (31%)
Query: 3 HDDNNLDTSTGQAPDQSTGNFTDKRCDHERGMNINIITVNGRIPFHKLLSFADLLDSVLM 62
H +++D TG+ ++ +I++V F D+ D
Sbjct: 2 HHHHHMDFETGEH-------------QYQ---YKDILSVF-EDAFVDNFDCKDVQDMPKS 44
Query: 63 LVGT-----IAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGA 117
++ I + + V LF L+ + + + VL+++ KF+
Sbjct: 45 ILSKEEIDHIIMSKDA--VSGTLRLFWTLLSK-QEEMVQK-FVEEVLRINYKFLM----- 95
Query: 118 GVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEV-----VGRISGDT 172
S + RQ + + Y+E D+ N +V V R+
Sbjct: 96 ---SPIKTEQ------RQPSMMTRMYIEQR--------DRLYNDNQVFAKYNVSRLQ-PY 137
Query: 173 LLIQDAIGE-KVGKFIQ-FGASFIGGF----LIA-----------FFKG--WLLTLTMLS 213
L ++ A+ E + K + G + G + W L L +
Sbjct: 138 LKLRQALLELRPAKNVLIDG---VLGSGKTWVALDVCLSYKVQCKMDFKIFW-LNLKNCN 193
Query: 214 SIPPLVIAGVVMIKLVGNLASQ-----KQAADSLAATVVAQTIGSIRTVASFTGEQQASS 268
S V+ L L Q +D + + I SI+ S
Sbjct: 194 S------PETVLEMLQ-KLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELR---RLLKSK 241
Query: 269 IYNKCL-----VKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGD 323
Y CL V++ K ++A+ L K++L +
Sbjct: 242 PYENCLLVLLNVQNAK-------------------AWNAFNL----SCKILLTTRFKQ-- 276
Query: 324 VMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDL----CCVN----- 374
V + +SL S + + + ++ +P+ DL N
Sbjct: 277 VTDFLSAATTTHISLDHHSM---TLTPDEVKSL-LLKYLDCRPQ-DLPREVLTTNPRRLS 331
Query: 375 --GKKLDDIRGDIE-LKDVNF---------SYPA-RPDE--QILNGFCLL-----IPNGT 414
+ + D + K VN S P E ++ + + IP
Sbjct: 332 IIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391
Query: 415 IAALVGTSGSGKSTVI-------SLIQRFYDPQAGEVLIDGVNLK-------EFQL-KWI 459
++ + V+ SL+++ P+ + I + L+ E+ L + I
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHKYSLVEK--QPKESTISIPSIYLELKVKLENEYALHRSI 449
Query: 460 REKIGLVSQ-EPVLLSSSIRDN-----IAYGKTHATKEE--------------------- 492
+ + + L D I + H E
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGH---HLKNIEHPERMTLFRMVFLDFRFLEQK 506
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
I+ + A NAS I N Q L + I + + +R ++ L +
Sbjct: 507 IRHDSTAWNASGSILNTLQQLK-FYKPY-ICDNDPKYER------LVNAILDFLPKIEEN 558
Query: 553 ALDSESGRMVQEAL 566
+ S+ +++ AL
Sbjct: 559 LICSKYTDLLRIAL 572
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 66.0 bits (162), Expect = 7e-12
Identities = 61/242 (25%), Positives = 109/242 (45%), Gaps = 38/242 (15%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAGEVLIDGVNLKEFQL 456
E IL G L++P G + AL+G +G+GKST+ ++ Y + GE+L+DG N+ E
Sbjct: 15 GETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSP 74
Query: 457 KWIREKIG--LVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGL 513
R + G L Q PV + +I + + E+ + F + + L
Sbjct: 75 -DERARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREV-------GVAEFWTKVKKAL 126
Query: 514 DT------------NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ N G SGG+K+R I + ++ +P +LDE S LD ++ ++
Sbjct: 127 ELLDWDESYLSRYLNEG-----FSGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKV 181
Query: 562 VQEALDRVMI-NRTTVIVSH--R-LSLIRNANIIAVIQQGKIVEKGTHS---ELLENPYG 614
V ++ + N ++++H R L+ I+ + + V+ G++V G EL Y
Sbjct: 182 VARGVNAMRGPNFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGGPELALELEAKGYE 240
Query: 615 AY 616
Sbjct: 241 WL 242
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 65.2 bits (160), Expect = 1e-11
Identities = 57/225 (25%), Positives = 95/225 (42%), Gaps = 46/225 (20%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGVEIQKLQV-- 1082
+ + + L +P G+ AL+G +G+GKST+ +L Y G I LDG I +L
Sbjct: 17 TILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDE 76
Query: 1083 ----------------------KWLRQQMGVVSQEPVL---FSDTIRANIAEMANANGFI 1117
+LR + V F ++ + + ++
Sbjct: 77 RARKGLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYL 136
Query: 1118 S-GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDA 1176
S L EG+ SGG+K+R I + +V EP +LDE S LDI++ +VV
Sbjct: 137 SRYLNEGF-----------SGGEKKRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARG 185
Query: 1177 LDQVMV-DRTTLVVAH--R-LSTIKNAHLIAVVSQGMIVEKGSHE 1217
++ + + LV+ H R L+ I+ + V+ G +V G E
Sbjct: 186 VNAMRGPNFGALVITHYQRILNYIQ-PDKVHVMMDGRVVATGGPE 229
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 64.5 bits (158), Expect = 3e-11
Identities = 61/219 (27%), Positives = 104/219 (47%), Gaps = 30/219 (13%)
Query: 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--QRFYDPSSGHITLDGVEIQKLQVKW 1084
+ R L L + PG+ A++G +GSGKST+ + L + Y+ + G + G ++ L
Sbjct: 34 AILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP-E 92
Query: 1085 LRQQMGV--VSQEP-----VLFSDTIRANIAEMANANG--------FISGLQEGYDTL-- 1127
R G+ Q P V ++ + + + G F ++E L
Sbjct: 93 DRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKM 152
Query: 1128 ---VGERGVQ--LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182
+ R V SGG+K+R I + V EP++ +LDE+ S LDI++ +VV D ++ +
Sbjct: 153 PEDLLTRSVNVGFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRD 212
Query: 1183 -DRTTLVVAH--R-LSTIKNAHLIAVVSQGMIVEKGSHE 1217
R+ ++V H R L IK + + V+ QG IV+ G
Sbjct: 213 GKRSFIIVTHYQRILDYIKPDY-VHVLYQGRIVKSGDFT 250
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 63.3 bits (155), Expect = 6e-11
Identities = 60/244 (24%), Positives = 112/244 (45%), Gaps = 42/244 (17%)
Query: 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--QRFYDPQAGEVLIDGVNLKEFQL 456
D+ IL G L + G + A++G +GSGKST+ + + + Y+ G V G +L
Sbjct: 32 DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSP 91
Query: 457 KWIREKIG--LVSQEP-----VLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509
R G + Q P V ++ + +++ +E + + F +
Sbjct: 92 -EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETL-------DRFDFQDLM 143
Query: 510 PQGLDT------------NVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557
+ + NVG SGG+K+R I + + +P + +LDE+ S LD +
Sbjct: 144 EEKIALLKMPEDLLTRSVNVG-----FSGGEKKRNDILQMAVLEPELCILDESDSGLDID 198
Query: 558 SGRMVQEALDRVMI-NRTTVIVSH--R-LSLIRNANIIAVIQQGKIVEKGTHS---ELLE 610
+ ++V + ++ + R+ +IV+H R L I+ + + V+ QG+IV+ G + +L E
Sbjct: 199 ALKVVADGVNSLRDGKRSFIIVTHYQRILDYIK-PDYVHVLYQGRIVKSGDFTLVKQLEE 257
Query: 611 NPYG 614
YG
Sbjct: 258 QGYG 261
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 58.1 bits (140), Expect = 6e-09
Identities = 31/175 (17%), Positives = 62/175 (35%), Gaps = 17/175 (9%)
Query: 432 LIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKE 491
+++ + E ++ + E I V + L + I E
Sbjct: 156 VVREVLNLDKFETAYKKLSELKGGSGGTEELIEKVKKYKALAREAALSKIG----ELASE 211
Query: 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGI-----QLSGGQKQRV------AIARAMIK 540
E + ++ + V G LSGG++ + A++ +
Sbjct: 212 IFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAG 271
Query: 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNA-NIIAV 593
+ +L+LDE T LD E R + ++R + ++VSH L A ++I +
Sbjct: 272 EISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRI 326
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 49.7 bits (118), Expect = 4e-06
Identities = 27/129 (20%), Positives = 50/129 (38%), Gaps = 18/129 (13%)
Query: 1101 DTIRANIAEMANANGFISGLQEGYDTLVGERGV-----QLSGGQKQRV------AIARAI 1149
I A E + + + V G LSGG++ + A++ +
Sbjct: 210 SEIFAEFTEGKYSEVVVRAEENKVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYL 269
Query: 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRLSTIKNA-HLIAV--- 1204
E +L+LDE T LD E R + +++ + ++V+H A H+I +
Sbjct: 270 AGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIRISLE 329
Query: 1205 --VSQGMIV 1211
S+ +V
Sbjct: 330 NGSSKVEVV 338
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 48.2 bits (115), Expect = 2e-06
Identities = 22/103 (21%), Positives = 44/103 (42%), Gaps = 16/103 (15%)
Query: 1123 GYDTLVGERGVQLSGGQKQRVAIA------RAIVKEPKILLLDEATSALDIESERVVQDA 1176
++ LSGG++ + +A + E +L+LDE T LD E R +
Sbjct: 47 VWEGK-ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITI 105
Query: 1177 LDQVMVDR--TTLVVAHRLSTIKNA-HLIAV-----VSQGMIV 1211
+++ + + ++V+H A H+I + S+ +V
Sbjct: 106 MER-YLKKIPQVILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 13/91 (14%)
Query: 523 QLSGGQKQRVAIA------RAMIKDPRILLLDEATSALDSESGRMVQEALDR-VMINRTT 575
LSGG++ + +A + + +L+LDE T LD E R + ++R +
Sbjct: 57 FLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQV 116
Query: 576 VIVSHRLSLIRNA-NIIAV-----IQQGKIV 600
++VSH L A ++I + + ++V
Sbjct: 117 ILVSHDEELKDAADHVIRISLENGSSKVEVV 147
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 46.8 bits (111), Expect = 3e-05
Identities = 22/83 (26%), Positives = 35/83 (42%), Gaps = 8/83 (9%)
Query: 523 QLSGGQKQRVAIA-------RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTT 575
LSGG++ VA++ + ++LDE T LD + E +V
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 576 VIVSHRLSLIRNA-NIIAVIQQG 597
+I++H L A II V + G
Sbjct: 340 IIITHHRELEDVADVIINVKKDG 362
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 42.1 bits (99), Expect = 7e-04
Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 7/81 (8%)
Query: 1134 QLSGGQKQRVAIARAI-------VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186
LSGG++ VA++ + + ++LDE T LD + + +V
Sbjct: 280 NLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQM 339
Query: 1187 LVVAHRLSTIKNAHLIAVVSQ 1207
+++ H A +I V +
Sbjct: 340 IIITHHRELEDVADVIINVKK 360
|
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1236 | |||
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 99.98 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 99.97 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.97 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.96 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 99.95 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 99.95 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.93 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.92 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.91 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.91 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.9 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.9 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.9 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.89 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.89 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.89 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.87 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.87 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.86 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.84 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.83 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.83 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.83 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.82 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.82 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.82 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.82 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.81 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.81 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.81 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.79 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.78 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.78 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.78 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.77 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.77 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.77 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.76 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.76 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.75 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.75 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.74 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.74 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.74 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.74 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.74 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.73 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.73 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.73 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.72 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.71 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.71 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.7 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.7 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.69 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.69 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.69 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.69 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.68 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.68 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.67 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.67 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.67 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.67 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.66 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.66 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.66 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.66 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.65 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.65 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.65 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.65 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.65 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.64 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.63 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.63 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.63 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.62 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.62 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.61 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.6 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.59 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.59 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.58 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.58 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.58 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.56 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.56 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.56 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.56 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.55 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.54 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.52 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.51 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.5 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.5 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.49 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.49 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.49 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.48 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.48 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.47 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.46 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.45 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.44 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.44 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.42 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.39 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.38 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.38 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.37 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.36 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.36 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.34 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.33 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.31 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.3 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.3 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.28 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.28 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.28 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.27 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.26 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.26 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.25 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.25 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.24 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.23 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.23 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.22 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.19 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.19 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.19 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.18 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.16 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.16 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.14 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.14 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.13 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.1 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.03 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.03 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.02 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.02 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.0 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 98.97 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.97 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.96 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.9 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.88 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.88 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.87 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 98.87 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.86 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 98.86 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.85 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 98.84 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 98.84 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.83 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.83 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 98.81 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.81 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 98.81 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.78 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.76 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 98.75 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.75 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 98.74 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 98.73 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.72 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.71 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.71 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.7 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.69 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 98.68 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.67 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.67 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 98.64 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.63 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 98.63 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 98.63 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.61 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.59 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 98.59 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 98.56 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 98.56 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 98.56 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.54 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 98.54 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.5 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.47 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.46 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.45 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.42 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.41 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.39 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.38 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 98.37 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.32 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.31 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.3 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.28 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.23 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.22 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.22 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.21 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.21 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.2 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.18 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 98.18 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.17 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.17 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.17 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 98.17 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.15 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.15 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.15 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.14 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.13 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.13 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.11 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.09 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.08 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.07 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.03 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.02 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.02 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.97 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.97 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.97 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 97.96 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.96 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 97.95 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 97.94 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 97.94 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 97.93 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.93 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 97.92 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 97.86 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.85 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.82 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.81 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 97.77 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.74 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.73 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 97.72 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 97.71 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.7 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 97.67 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.67 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 97.63 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 97.59 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 97.59 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 97.54 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 97.51 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.45 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.45 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.42 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.35 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.31 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 97.31 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 97.26 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.26 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 97.26 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.24 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.23 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.23 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 97.22 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.22 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.2 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.18 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 97.18 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.18 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.15 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.15 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 97.15 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 97.13 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.12 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 97.08 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.08 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 97.06 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.03 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.02 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.01 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 97.01 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 97.0 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.0 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 97.0 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.0 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.99 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 96.99 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.98 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 96.97 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 96.97 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 96.94 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 96.94 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 96.92 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.92 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.86 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 96.85 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.84 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 96.83 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 96.8 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.8 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.78 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.76 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 96.75 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.73 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.7 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.7 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 96.69 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.68 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.68 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.67 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.59 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 96.56 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 96.55 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.51 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.48 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 96.44 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.43 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.43 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.42 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.42 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 96.39 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 96.39 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 96.39 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.39 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.38 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.36 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.33 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.29 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.29 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.25 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.21 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 96.21 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 96.16 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 96.15 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.15 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 96.12 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 96.11 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 96.08 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 96.07 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 96.06 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 96.03 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 96.01 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 96.0 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.95 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.93 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.93 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 95.93 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 95.91 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 95.86 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 95.83 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 95.81 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 95.75 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.73 | |
| 2b8t_A | 223 | Thymidine kinase; deoxyribonucleoside kinase, zinc | 95.67 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 95.66 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.65 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.64 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.62 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 95.62 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.59 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.56 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 95.54 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.51 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 95.5 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 95.48 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 95.48 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 95.47 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.44 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 95.44 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 95.43 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.43 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.42 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.42 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.4 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 95.36 |
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-197 Score=1958.80 Aligned_cols=1190 Identities=36% Similarity=0.630 Sum_probs=1051.3
Q ss_pred cccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-----------------chhHHHhhHH
Q 040099 42 NGRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNA-----------------TKTLAIHGVL 104 (1236)
Q Consensus 42 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~-----------------~~~~~~~~~~ 104 (1236)
..+++++++|+|+.++++++++++++++++.++..|++++++|+++|.+.... ....+...+.
T Consensus 57 ~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 136 (1321)
T 4f4c_A 57 VNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHDVM 136 (1321)
T ss_dssp SSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHHHH
T ss_pred cCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHH
Confidence 35678999999999999999999999999999999999999999998763210 1112334455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHH
Q 040099 105 KVSKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVG 184 (1236)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~ 184 (1236)
.+++++++++++.+++.|++.+++.++++++..++|.++|+|++++|++|||++ ++|++++|+++|++.+++++++.+.
T Consensus 137 ~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~~-~~G~l~sr~~~D~~~i~~~~~~~l~ 215 (1321)
T 4f4c_A 137 NVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDTN-HSGTLATKLFDNLERVKEGTGDKIG 215 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHHT-CCTTHHHHHHHHHHHHHHTSSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCC-ChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667778888889999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHH
Q 040099 185 KFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQ 264 (1236)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 264 (1236)
.++..+++++++++++|+++|++++++++++|+++++..++.++.++..++.++..+++++.++|.++|+++||+|++|+
T Consensus 216 ~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~ 295 (1321)
T 4f4c_A 216 MAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLNGLR 295 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhcccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 265 QASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPC 344 (1236)
Q Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~ 344 (1236)
.+.++|.+..++..+...+.....++..++..++..+++++++|+|++++.+|.+|+|++++++.++.....|+..+++.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~~~~ 375 (1321)
T 4f4c_A 296 YELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLAGPQ 375 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCC
Q 040099 345 LSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGS 424 (1236)
Q Consensus 345 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGs 424 (1236)
+..++++.+|++|++++++.+|+.+.....+..+.+.+|+|+|+||+|+||+++++++|+|+||+|++||++||||||||
T Consensus 376 ~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGs 455 (1321)
T 4f4c_A 376 LAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGC 455 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSS
T ss_pred HHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCC
Confidence 99999999999999999998887654432233344567899999999999977778999999999999999999999999
Q ss_pred cHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHH
Q 040099 425 GKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASH 504 (1236)
Q Consensus 425 GKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~ 504 (1236)
|||||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+||||++||+|||+||+|+++++++++||+.|++++
T Consensus 456 GKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~l~~ 535 (1321)
T 4f4c_A 456 GKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMANAEK 535 (1321)
T ss_dssp CHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHH
T ss_pred cHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHccchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 505 FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 505 ~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
||++||+||||.|||+|.+||||||||||||||+++||+||||||||||||+++|+.++++|+++.+|||+|+||||+++
T Consensus 536 ~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~ 615 (1321)
T 4f4c_A 536 FIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLST 615 (1321)
T ss_dssp HHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTT
T ss_pred HHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccCCC----C-----CCCCCCCCC----C---
Q 040099 585 IRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVNNS----D-----SDNQPFASP----K--- 648 (1236)
Q Consensus 585 ~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~----~-----~~~~~~~~~----~--- 648 (1236)
+++||+|+||++|+|+|+|+|+||+++ +|.|+++++.|...+..+....... . ......... .
T Consensus 616 i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 694 (1321)
T 4f4c_A 616 IRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIM 694 (1321)
T ss_dssp TTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHHHHHHHHHHHHCC-----------------------------
T ss_pred HHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhhhcccccccccccccccccccccccccccccccccccccchh
Confidence 999999999999999999999999998 8999999998864432211110000 0 000000000 0
Q ss_pred ----CCC--C--CC---CCcCCCC--------ccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHH
Q 040099 649 ----ITT--P--KQ---SETESDF--------PASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVM 709 (1236)
Q Consensus 649 ----~~~--~--~~---~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 709 (1236)
... . .. .+.+... ....++.......+++++++.+++++.++++++++.+.+...|.++++
T Consensus 695 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~i~~~~~~~~~~~ 774 (1321)
T 4f4c_A 695 NRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLFEILYHARPHALSLFIGMSTATIGGFIYPTYSVF 774 (1321)
T ss_dssp ---------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHHHTGGGHHHHHHHHHHHHHGGGHHHHHHHH
T ss_pred hhhhccccccccCCcchhHHHhhccchhHHHHHHHHHHcCCcceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 000 0 00 0000000 000111223345677788888999999999999999999999999999
Q ss_pred HHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhH
Q 040099 710 LAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGA 789 (1236)
Q Consensus 710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~ 789 (1236)
+..+++.+............+|.++|++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||..++++|+
T Consensus 775 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~l~~~il~~~~~ffd~~~~~~G~ 854 (1321)
T 4f4c_A 775 FTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNKLFRNVLSQHIGFFDSPQNASGK 854 (1321)
T ss_dssp HHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCSSSTTSGGGCHHH
T ss_pred HHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhccCCCChHH
Confidence 99988877654444445567888999999999999999999999999999999999999999999999999987899999
Q ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 040099 790 IGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEA 869 (1236)
Q Consensus 790 l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~ 869 (1236)
++||+++|++.++..++..+..++..++.++++++++++.+|.+++++++++|++++..+++.+.......+..+...+.
T Consensus 855 i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 934 (1321)
T 4f4c_A 855 ISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLIIAILPIVAFGQYLRGRRFTGKNVKSASEFADS 934 (1321)
T ss_dssp HHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH
T ss_pred HHhcchhhHHHHHHHHHHHHHHHHHHhhhHHHHeeeehHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999998888877766655555556667778
Q ss_pred HHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHH-
Q 040099 870 SQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFT- 948 (1236)
Q Consensus 870 ~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~- 948 (1236)
..++.|+++|+++||+|+.++++.++|.+..+...+...+.....++..++...+..+..++++++|..++..+..+.+
T Consensus 935 ~~~~~e~l~gi~tIra~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~ 1014 (1321)
T 4f4c_A 935 GKIAIEAIENVRTVQALAREDTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQP 1014 (1321)
T ss_dssp HHHHHHHHHTHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCH
T ss_pred HHHHHHHHhhHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCccccch
Confidence 8899999999999999999999999999999999999999888999989998889999999999999999988876654
Q ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcc
Q 040099 949 -EVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIE 1027 (1236)
Q Consensus 949 -~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~ 1027 (1236)
.++.++.++.+...++..+...+.++.++..+++|++++++.+++.+..... .+.++..|+|+|+||+|+||++++.+
T Consensus 1015 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~-~~~~~~~g~I~f~nVsf~Y~~~~~~~ 1093 (1321)
T 4f4c_A 1015 MRVLRVMYAITISTSTLGFATSYFPEYAKATFAGGIIFGMLRKISKIDSLSLA-GEKKKLYGKVIFKNVRFAYPERPEIE 1093 (1321)
T ss_dssp HHHHHHHHHHHTTTSSTTGGGGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCC-SBCCCCCCCEEEEEEEECCTTSCSSC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCcccCCCccCC-CCCCCCCCeEEEEEEEEeCCCCCCCc
Confidence 4444455555556677788888999999999999999999987766543322 22345678999999999999888778
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
||+||||+|+|||+||||||||||||||+++|+|||+|++|+|+|||+||+++++++||++|++|||||+||+|||||||
T Consensus 1094 VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNI 1173 (1321)
T 4f4c_A 1094 ILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFDCSIAENI 1173 (1321)
T ss_dssp SEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCSEEHHHHH
T ss_pred cccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCHHHHHhheEEECCCCEeeCccHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999997
Q ss_pred H-----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1108 A-----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1108 ~-----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
+ +.|++++||.+||+||||.|||+|.+|||||||||||||||+|||+|||||||||+||++||
T Consensus 1174 ~~gld~~~~sd~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1174 IYGLDPSSVTMAQVEEAARLANIHNFIAELPEGFETRVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 1253 (1321)
T ss_dssp SSSSCTTTSCHHHHHHHHHHTTCHHHHHTSTTTTCSEETTTSCSSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHH
T ss_pred hccCCCCCCCHHHHHHHHHHhCChHHHHcCcCCCCCEecCCCcccCHHHHHHHHHHHHHHhCCCEEEEeCccccCCHHHH
Confidence 2 67899999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1171 RVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1171 ~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+.||++|++.+++||+|+|||||+|+++||||+|||+|+|+|+|+|+||+++ +|.|++||+.|.
T Consensus 1254 ~~Iq~~l~~~~~~~TvI~IAHRLsTi~~aD~I~Vld~G~IvE~Gth~eLl~~-~g~y~~L~~~Q~ 1317 (1321)
T 4f4c_A 1254 KVVQEALDRAREGRTCIVIAHRLNTVMNADCIAVVSNGTIIEKGTHTQLMSE-KGAYYKLTQKQM 1317 (1321)
T ss_dssp HHHHHHHTTTSSSSEEEEECSSSSTTTTCSEEEEESSSSEEEEECHHHHHHC-C-----------
T ss_pred HHHHHHHHHHcCCCEEEEeccCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999997 899999999885
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-174 Score=1731.06 Aligned_cols=1190 Identities=40% Similarity=0.691 Sum_probs=1048.0
Q ss_pred ccchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc----------------hhHHHhhHHHH
Q 040099 43 GRIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNAT----------------KTLAIHGVLKV 106 (1236)
Q Consensus 43 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~----------------~~~~~~~~~~~ 106 (1236)
.+..++++++|..++++.+++++++++++.+++.|+++++++.++|.+....+ .......+..+
T Consensus 31 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 110 (1284)
T 3g5u_A 31 PAVSVLTMFRYAGWLDRLYMLVGTLAAIIHGVALPLMMLIFGDMTDSFASVGNVSKNSTNMSEADKRAMFAKLEEEMTTY 110 (1284)
T ss_dssp --CTTHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccccccccccchhhhHHHHHHH
Confidence 34578899999988777788889999999999999999999999997642110 00111234455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHH
Q 040099 107 SKKFVYLALGAGVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKF 186 (1236)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~ 186 (1236)
++++++++++.+++.+++.+++.+.++++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+...+..+
T Consensus 111 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~f~~~-~~G~l~sr~~~D~~~i~~~~~~~~~~~ 189 (1284)
T 3g5u_A 111 AYYYTGIGAGVLIVAYIQVSFWCLAAGRQIHKIRQKFFHAIMNQEIGWFDVH-DVGELNTRLTDDVSKINEGIGDKIGMF 189 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTTHHHHSC-CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6677778888889999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHH
Q 040099 187 IQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQA 266 (1236)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~ 266 (1236)
+..+++++++++++++++|++++++++++|+++++..++.++.++..++.++..+++++.+.|+++|+++||+|++|+.+
T Consensus 190 ~~~~~~~i~~~~~~~~~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~l~gi~~ikaf~~e~~~ 269 (1284)
T 3g5u_A 190 FQAMATFFGGFIIGFTRGWKLTLVILAISPVLGLSAGIWAKILSSFTDKELHAYAKAGAVAEEVLAAIRTVIAFGGQKKE 269 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCHHHHHTTCCCCSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHhcchHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 267 SSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLS 346 (1236)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~ 346 (1236)
.++|.+..++..+...+.....+...++..++.++.+++++|+|++++..|.+++|.++++++++.....|+.++.+.+.
T Consensus 270 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~g~~~~g~~~~~~~~~~~~~~~~~~~~~~~~ 349 (1284)
T 3g5u_A 270 LERYNNNLEEAKRLGIKKAITANISMGAAFLLIYASYALAFWYGTSLVISKEYSIGQVLTVFFSVLIGAFSVGQASPNIE 349 (1284)
T ss_dssp HHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988888888889999999999
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcH
Q 040099 347 AFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGK 426 (1236)
Q Consensus 347 ~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGK 426 (1236)
.++++.++++|++++++.+|+++.....+..++..+|.|+|+||+|+|+++++.++|+||||+|++||++||||||||||
T Consensus 350 ~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGK 429 (1284)
T 3g5u_A 350 AFANARGAAYEVFKIIDNKPSIDSFSKSGHKPDNIQGNLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGK 429 (1284)
T ss_dssp HHHHHHHHHHHHHHTTSCCCCCSSCCSSCCCCTTCCCCEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCcccccCCCCCCCCCeEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCH
Confidence 99999999999999999877654322122233345688999999999986555689999999999999999999999999
Q ss_pred HHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHH
Q 040099 427 STVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFI 506 (1236)
Q Consensus 427 STl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i 506 (1236)
|||+++|+|+|+|++|+|.+||+|+++++.+++|++||||+|+|+||++||+|||.+|.++.++++++++++.+++++++
T Consensus 430 STl~~ll~g~~~~~~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~g~~~~~~~~~~~~~~~~~~~~~i 509 (1284)
T 3g5u_A 430 STTVQLMQRLYDPLDGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFATTIAENIRYGREDVTMDEIEKAVKEANAYDFI 509 (1284)
T ss_dssp HHHHHHTTTSSCCSEEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSSCHHHHHHHHCSSCCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHhCCCCCCCeEEEECCEEHHhCCHHHHHhheEEEcCCCccCCccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999888999999999999999999
Q ss_pred HhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh
Q 040099 507 KNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR 586 (1236)
Q Consensus 507 ~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 586 (1236)
.++|+|+||.+||+|.+|||||||||+|||||+++|+|||||||||+||+++++.+++.++++.+|+|+|+||||+++++
T Consensus 510 ~~l~~g~~t~~~~~g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~ 589 (1284)
T 3g5u_A 510 MKLPHQFDTLVGERGAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVR 589 (1284)
T ss_dssp HHSTTGGGCCCSSSSCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHT
T ss_pred HhccccccccccCCCCccCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999888999999999999999
Q ss_pred hcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhhhhcccccccC---CCCCCCCCCC--CC-------CCCC-C-
Q 040099 587 NANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQETCKESEKSAVN---NSDSDNQPFA--SP-------KITT-P- 652 (1236)
Q Consensus 587 ~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~--~~-------~~~~-~- 652 (1236)
.||+|+||++|+|+++|+|+|++++ ++.|.+++..|......+..... .......... .. .... .
T Consensus 590 ~~d~i~vl~~G~i~~~g~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 668 (1284)
T 3g5u_A 590 NADVIAGFDGGVIVEQGNHDELMRE-KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRRRSTRKSI 668 (1284)
T ss_dssp TCSEEEECSSSCCCCEECHHHHHHT-TSHHHHHHHHTC------------------------------------------
T ss_pred cCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHhhhccccccccccccccccccccccccccccccccccccccccc
Confidence 9999999999999999999999988 79999998776543221100000 0000000000 00 0000 0
Q ss_pred -CCC-CcCCCCccccccCCCCcchhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCch--hHHhhhH
Q 040099 653 -KQS-ETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPK--EELMRHS 728 (1236)
Q Consensus 653 -~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~ 728 (1236)
... .......++..+.......+++++.+.+++++.++++++++++.+...|.+++++..+++.+.... .......
T Consensus 669 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 748 (1284)
T 3g5u_A 669 CGPHDQDRKLSTKEALDEDVPPASFWRILKLNSTEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNS 748 (1284)
T ss_dssp ---------------CCCCCSCCCTTHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHH
T ss_pred ccccccccccchhhhhhccccchHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHH
Confidence 000 000000001111122334566777777777888888888888899999999999988887664331 2233445
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHH
Q 040099 729 KHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDT 808 (1236)
Q Consensus 729 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~ 808 (1236)
..|..++++++++..++.+++.+++.+.+.++..++|.++|++++++|++|||.+++++|++++|+++|++.++..++..
T Consensus 749 ~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~~~G~l~~rl~~D~~~i~~~~~~~ 828 (1284)
T 3g5u_A 749 NLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKNTTGALTTRLANDAAQVKGATGSR 828 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 66788888888889999999999999999999999999999999999999999888999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcc
Q 040099 809 LSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCA 888 (1236)
Q Consensus 809 l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~ 888 (1236)
+..++..+..++.++++++.++|.+++++++++|+++++.++..+.......+..+........+.|+++|+++||+|+.
T Consensus 829 l~~~~~~~~~~~~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~ 908 (1284)
T 3g5u_A 829 LAVIFQNIANLGTGIIISLIYGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTR 908 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHSSCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 99999999999999999999999999999999999999998888888887778888888888999999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHH
Q 040099 889 EEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTS 968 (1236)
Q Consensus 889 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 968 (1236)
++++.++|.+..+...+...+...+.+...++...+.++..++++|+|++++..+.++++.++.++.++.+...++..+.
T Consensus 909 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 988 (1284)
T 3g5u_A 909 EQKFETMYAQSLQIPYRNAMKKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVS 988 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999888888888999999999999999999999999999999999999999998888888999888
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCC
Q 040099 969 SLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGES 1048 (1236)
Q Consensus 969 ~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~S 1048 (1236)
...+++.++..+++|+.++++.+++.+.....+..+++..|.|+|+||+|+||++++.++|+|+||+|+|||++||||||
T Consensus 989 ~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~s 1068 (1284)
T 3g5u_A 989 SFAPDYAKATVSASHIIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSS 1068 (1284)
T ss_dssp SSSCCSTHHHHHHHHHHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSS
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCC
Confidence 88889999999999999999987665432222223334568999999999998766567999999999999999999999
Q ss_pred CCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH-----------------HHh
Q 040099 1049 GSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA-----------------EMA 1111 (1236)
Q Consensus 1049 GSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~-----------------~~a 1111 (1236)
|||||||+++|+|+|+|++|+|.+||+|+++++++++|++|+||||||.+|++||+|||. +.+
T Consensus 1069 GsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~ 1148 (1284)
T 3g5u_A 1069 GCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEA 1148 (1284)
T ss_dssp STTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999999999993 467
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaH 1191 (1236)
++++++.++|+||||.+||+|.+||||||||+||||||+++|+|||||||||+||+++++.|+++|++..+++|+|+|||
T Consensus 1149 ~~~~~i~~l~~gldt~vge~G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH 1228 (1284)
T 3g5u_A 1149 NIHQFIDSLPDKYNTRVGDKGTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAH 1228 (1284)
T ss_dssp TCHHHHSSTTTGGGCBCSTTSCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECS
T ss_pred CcHHHHHhCccccccccCCCCCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEec
Confidence 88899999999999999999999999999999999999999999999999999999999999999999888999999999
Q ss_pred CchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhccC
Q 040099 1192 RLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1192 Rl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
|+++++.||||+||++|+|+|.|+|+||+++ +|.|++|++.|.
T Consensus 1229 ~l~~i~~~dri~vl~~G~i~~~g~~~~l~~~-~g~y~~l~~~q~ 1271 (1284)
T 3g5u_A 1229 RLSTIQNADLIVVIQNGKVKEHGTHQQLLAQ-KGIYFSMVSVQA 1271 (1284)
T ss_dssp CTTGGGSCSEEEEEETBEEEEEECHHHHHHS-CSHHHHHHHHHC
T ss_pred CHHHHHcCCEEEEEECCEEEEECCHHHHHhC-CCHHHHHHHHHh
Confidence 9999999999999999999999999999996 899999998763
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-90 Score=855.95 Aligned_cols=572 Identities=26% Similarity=0.380 Sum_probs=522.0
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
+..++++++|.+++++ .++++++++++.+++.+..|+++++++|.+....+. ..+..+.+++++++++..++.++
T Consensus 8 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (587)
T 3qf4_A 8 GGGSKTLARYLKPYWI-FAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGDF----SLVLKTGILMLIVALIGAVGGIG 82 (587)
T ss_dssp CCCCCCGGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCH----HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678889988865 456677777888888889999999999986433222 22334445555666677788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
..++..+.++++..++|.++|+|++++|+.||+++ ++|++++|+++|++.+++++...+..++..++++++++++++++
T Consensus 83 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 161 (587)
T 3qf4_A 83 CTVFASYASQNFGADLRRDLFRKVLSFSISNVNRF-HTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSI 161 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHS-CHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHccC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+
T Consensus 162 ~~~l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 241 (587)
T 3qf4_A 162 NVKLSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIIS 241 (587)
T ss_dssp CTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..+..++++|+|++++.+|.+++|.+++++.++.....|+..++..+..++++.+|++|++++++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 321 (587)
T 3qf4_A 242 AFSLIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLN 321 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+|+.++.. .....++..+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 322 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~ 399 (587)
T 3qf4_A 322 EKPAIEEAD-NALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGR 399 (587)
T ss_dssp CCCSCCCCT-TCBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEE
T ss_pred CCCccCCCC-CccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcE
Confidence 877644322 112223346789999999999743 467999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++|+||||+|++|++||+|||.+|.+..++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 400 i~i~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~ 479 (587)
T 3qf4_A 400 VEVDELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRN 479 (587)
T ss_dssp EEESSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCS
T ss_pred EEECCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCC
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+++.|+++.+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 480 LSgGqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g 559 (587)
T 3qf4_A 480 FSGGQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFG 559 (587)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEE
T ss_pred cCHHHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhhh
Q 040099 604 THSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
+|+|++++ ++.|++++..|.
T Consensus 560 ~~~el~~~-~~~~~~~~~~~~ 579 (587)
T 3qf4_A 560 THKELLEH-CKPYREIYESQF 579 (587)
T ss_dssp CHHHHHHH-CHHHHHHHHHHC
T ss_pred CHHHHHhC-CcHHHHHHHHHh
Confidence 99999987 789999998764
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-89 Score=851.25 Aligned_cols=572 Identities=30% Similarity=0.418 Sum_probs=519.1
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccc---hhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNAT---KTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+ ..........++..++++.++..++.++
T Consensus 2 ~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (578)
T 4a82_A 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (578)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788899998865 45667777777888888899999999998654321 1111011123334445556667788899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++.+++++++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999988888999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..++.++++++|++++.+|.+|+|.+++++.++.....|+.++...+..++++.+|++|++++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.++.. ...+.+...+.|+++||+|+|+++ ++++|+|+||+|++||++|||||||||||||+++|+|+++|++|+
T Consensus 320 ~~~~~~~~~-~~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGV-GAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCT-TCCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCC-CccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 877654321 112223345789999999999742 457999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|.+..+++++.++++.+++++++.++|+|++|.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+.+.++++.+++|+|+||||+++++.||+|++|++|+|+++|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+|++++ ++.|+++++.|
T Consensus 558 ~~~el~~~-~~~~~~~~~~q 576 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQ 576 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTT
T ss_pred CHHHHHhC-CcHHHHHHHhh
Confidence 99999987 78999998765
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-89 Score=920.72 Aligned_cols=564 Identities=35% Similarity=0.626 Sum_probs=520.9
Q ss_pred CCCCcchhHHHhhhcCC-chHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCc-------------------hhHHhhh
Q 040099 668 KMPPDVSLSRLAYLNSP-EVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEP-------------------KEELMRH 727 (1236)
Q Consensus 668 ~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~ 727 (1236)
+..+++++++++.|..+ ++..+++|++++++.|+..|+++++++.+++.+... .......
T Consensus 55 ~~~~~v~~~~Lfrya~~~d~~l~~~g~~~a~~~G~~~p~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (1321)
T 4f4c_A 55 EVVNKVSIPQLYRYTTTLEKLLLFIGTLVAVITGAGLPLMSILQGKVSQAFINEQIVINNNGSTFLPTGQNYTKTDFEHD 134 (1321)
T ss_dssp CCSSCCCHHHHTTTCCHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHTTSCBCSSTTCBCCHHHHHHH
T ss_pred cccCCCCHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHH
Confidence 34456788888887654 456677889999999999999999998887764211 1122344
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHH
Q 040099 728 SKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGD 807 (1236)
Q Consensus 728 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~ 807 (1236)
...+.+++++++++.+++.+++.+++.+.+++...++|.++|++++++|++|||+ +++|++++|+++|++.++..+..
T Consensus 135 ~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~r~~~~lR~~~~~~ll~~~~~~fd~--~~~G~l~sr~~~D~~~i~~~~~~ 212 (1321)
T 4f4c_A 135 VMNVVWSYAAMTVGMWAAGQITVTCYLYVAEQMNNRLRREFVKSILRQEISWFDT--NHSGTLATKLFDNLERVKEGTGD 212 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCHHHHHH--TCCTTHHHHHHHHHHHHHHTSSH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCC--CChHHHHHHHHHHHHHHHHHHHH
Confidence 5567778888888899999999999999999999999999999999999999995 88999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhc
Q 040099 808 TLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFC 887 (1236)
Q Consensus 808 ~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~ 887 (1236)
.+..++..+++++++++++++.+|.+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+
T Consensus 213 ~l~~~~~~~~~~i~~~i~~~~~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~ 292 (1321)
T 4f4c_A 213 KIGMAFQYLSQFITGFIVAFTHSWQLTLVMLAVTPIQALCGFAIAKSMSTFAIRETLRYAKAGKVVEETISSIRTVVSLN 292 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999899999999999999999999999999999
Q ss_pred cHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHH
Q 040099 888 AEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQT 967 (1236)
Q Consensus 888 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~ 967 (1236)
+|+++.++|.+..++..+...+.....++..+...++.++..++++|+|++++..|.+++|.+++++.++.....++..+
T Consensus 293 ~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~~ 372 (1321)
T 4f4c_A 293 GLRYELERYSTAVEEAKKAGVLKGLFLGISFGAMQASNFISFALAFYIGVGWVHDGSLNFGDMLTTFSSVMMGSMALGLA 372 (1321)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcC
Q 040099 968 SSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGE 1047 (1236)
Q Consensus 968 ~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~ 1047 (1236)
...+..+.++..+++|++++++.+++.+.....+..+.+..|+|+|+||+|+||++++.++|+|+||+|+|||++|||||
T Consensus 373 ~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~g~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~ 452 (1321)
T 4f4c_A 373 GPQLAVLGTAQGAASGIYEVLDRKPVIDSSSKAGRKDMKIKGDITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGS 452 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTTSCCSSCSSSCCCCCCCCCCCEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCccccccccccccCCCCCCcEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEec
Confidence 99999999999999999999998877655444444445567899999999999988888999999999999999999999
Q ss_pred CCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhh
Q 040099 1048 SGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMAN 1112 (1236)
Q Consensus 1048 SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~ 1112 (1236)
||||||||+++|+|+|+|++|+|++||+|++++++++||++|+||||||+||+|||||||. +.|+
T Consensus 453 sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~~TI~eNI~~g~~~~~~~~v~~a~~~a~ 532 (1321)
T 4f4c_A 453 SGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINLEFLRKNVAVVSQEPALFNCTIEENISLGKEGITREEMVAACKMAN 532 (1321)
T ss_dssp SSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHEEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTT
T ss_pred CCCcHHHHHHHhccccccccCcccCCCccchhccHHHHhhcccccCCcceeeCCchhHHHhhhcccchHHHHHHHHHHcc
Confidence 9999999999999999999999999999999999999999999999999999999999995 6788
Q ss_pred hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 040099 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192 (1236)
Q Consensus 1113 ~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR 1192 (1236)
+++||+.||+|+||.|||+|.+||||||||||||||+++||+||||||||||||++||+.|+++|++..++||+|+||||
T Consensus 533 l~~~i~~lp~G~~T~vGe~G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHr 612 (1321)
T 4f4c_A 533 AEKFIKTLPNGYNTLVGDRGTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHR 612 (1321)
T ss_dssp CHHHHHHSTTTTSSEESSSSCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSC
T ss_pred chhHHHcCCCCCccEecCCCCCCCHHHHHHHHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1193 LSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1193 l~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
++++++||+|+||++|+|+|+|||+||+++ +|.|++|++.|
T Consensus 613 ls~i~~aD~Iivl~~G~ive~Gth~eL~~~-~g~y~~l~~~q 653 (1321)
T 4f4c_A 613 LSTIRNADLIISCKNGQVVEVGDHRALMAQ-QGLYYDLVTAQ 653 (1321)
T ss_dssp TTTTTTCSEEEEEETTEEEEEECHHHHHTT-TCHHHHHHHHH
T ss_pred HHHHHhCCEEEEeeCCeeeccCCHHHHHHh-hhHHHHHHHhh
Confidence 999999999999999999999999999997 99999999866
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-89 Score=854.60 Aligned_cols=571 Identities=26% Similarity=0.423 Sum_probs=524.7
Q ss_pred cchHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 44 RIPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 44 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
+..++++++|++++++ .++++++++++.+++.+..|++++.++|.+....+. ..+..+++.++++.++..++.++
T Consensus 22 ~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 96 (598)
T 3qf4_B 22 TATLRRLLGYLRPHTF-TLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRRF----DLLPRYMLILGTIYALTSLLFWL 96 (598)
T ss_dssp HHHHHHHGGGTGGGHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCG----GGHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467889999998765 456677777888888899999999999986533221 22334455566667778889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++....+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++.+++++++++++++++
T Consensus 97 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 175 (598)
T 3qf4_B 97 QGKIMLTLSQDVVFRLRKELFEKLQRVPVGFFDRT-PHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRV 175 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCTHHHHHS-CHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHcCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|++..++..+...+
T Consensus 176 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~ 255 (598)
T 3qf4_B 176 NVILSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTK 255 (598)
T ss_dssp CHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..++.++++++|++++.+|.+++|.+++++.+......|+..+...+..++++.++++|++++++
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 335 (598)
T 3qf4_B 256 AQIFSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILD 335 (598)
T ss_dssp HHHHTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999998888899999999999999999999999999999
Q ss_pred cCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 364 RKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 364 ~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.+++.+... ..+.++..+.|+++||+|+|++ ++++|+|+||+|++||++|||||||||||||+++|+|+|+|++|+
T Consensus 336 ~~~~~~~~~--~~~~~~~~~~i~~~~v~~~y~~--~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 411 (598)
T 3qf4_B 336 LEEEKDDPD--AVELREVRGEIEFKNVWFSYDK--KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQ 411 (598)
T ss_dssp SCCCCCCSS--CCCCCSCCCCEEEEEEECCSSS--SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEE
T ss_pred CCCCCCCCC--CCCCCCCCCeEEEEEEEEECCC--CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeE
Confidence 877643221 1222344678999999999963 357999999999999999999999999999999999999999999
Q ss_pred EEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
|.+||+|+++++.+++|++||||||+|++|++||+|||.+|++..++++++++++.+++++++.++|+|++|.+|++|.+
T Consensus 412 i~~~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~ 491 (598)
T 3qf4_B 412 ILVDGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGED 491 (598)
T ss_dssp EEETTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTT
T ss_pred EEECCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCC
Confidence 99999999999999999999999999999999999999999988888999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+++.|+++.+|+|+|+||||+++++.||+|++|++|+|+++|
T Consensus 492 LSgGq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 571 (598)
T 3qf4_B 492 LSQGQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMG 571 (598)
T ss_dssp SCHHHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECS
T ss_pred CCHHHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999998899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhhhh
Q 040099 604 THSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
+|+|++++ ++.|++++..|..
T Consensus 572 ~~~~l~~~-~~~~~~~~~~~~~ 592 (598)
T 3qf4_B 572 KHDELIQK-RGFYYELFTSQYG 592 (598)
T ss_dssp CHHHHHHT-TCHHHHHHHHHHG
T ss_pred CHHHHHhC-CCHHHHHHHHHhh
Confidence 99999987 7999999987754
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-87 Score=829.07 Aligned_cols=568 Identities=31% Similarity=0.477 Sum_probs=515.7
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+. ..+...+..++++.++..++.++..
T Consensus 12 ~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (582)
T 3b5x_A 12 TFKRLWTYIRLYKA-GLVVSTIALVINAAADTYMISLLKPLLDEGFGNAES----NFLRILPFMILGLMFVRGLSGFASS 86 (582)
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46778888887755 345666777778888888899999999986532111 1122223334555667788889999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++|
T Consensus 87 ~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~ 165 (582)
T 3b5x_A 87 YCLSWVSGNVVMQMRRRLFNHFMHMPVRFFDQE-STGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSW 165 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 999999999999999999999999999999998 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+..
T Consensus 166 ~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 245 (582)
T 3b5x_A 166 QLSLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLV 245 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
+..+...++..++..+..++++|+|++++.+|.+|+|++++++.++.....|+..+...+..++++.++++|++++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~ 325 (582)
T 3b5x_A 246 SAQSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLE 325 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999877
Q ss_pred CCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 366 PEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 366 ~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
++.++. ..+.+...+.|+++||+|+|+++ ++++|+|+||++++||++|||||||||||||+++|+|+++|++|+|.
T Consensus 326 ~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~ 401 (582)
T 3b5x_A 326 TERDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSIC 401 (582)
T ss_pred CcCCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEE
Confidence 654321 11122234679999999999742 25799999999999999999999999999999999999999999999
Q ss_pred ECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCC
Q 040099 446 IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQL 524 (1236)
Q Consensus 446 ~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~L 524 (1236)
+||+|+++++.+++|++||||||+|++|++||+|||.+|. ++.++++++++++.++++++++++|+|+||.+|++|.+|
T Consensus 402 ~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~L 481 (582)
T 3b5x_A 402 LDGHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSL 481 (582)
T ss_pred ECCEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcC
Confidence 9999999999999999999999999999999999999997 677889999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
|||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+|+|+|+||||+++++.||+|++|++|+++++|+
T Consensus 482 SgGq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~ 561 (582)
T 3b5x_A 482 SGGQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGR 561 (582)
T ss_pred CHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999999888999999999999999999999999999999999
Q ss_pred cccccccccchhhhhHHhhh
Q 040099 605 HSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 605 ~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+|++++ ++.|+++++.|.
T Consensus 562 ~~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 562 HADLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHHHhC-CcHHHHHHHHhh
Confidence 9999987 789999998763
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=8.2e-87 Score=828.81 Aligned_cols=568 Identities=32% Similarity=0.493 Sum_probs=515.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..++++++|.+++++ .++++++++++.+++.+..|++++.++|.+....+. ..+...++.++++.++..++.++.
T Consensus 11 ~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 85 (582)
T 3b60_A 11 QTFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYIS 85 (582)
T ss_dssp HHHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCch----HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357788888888755 445666777778888888899999999976432111 112222333455566778888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKG 204 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (1236)
.++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++++...+..++..+++++++++++++++
T Consensus 86 ~~~~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~~-~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~ 164 (582)
T 3b60_A 86 SYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYS 164 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHH
Q 040099 205 WLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQE 284 (1236)
Q Consensus 205 ~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 284 (1236)
|.+++++++++|+++++..++.++.++..++.++..+++++.+.|.++|+++||+|++|+.+.++|.+..++..+...+.
T Consensus 165 ~~l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~ 244 (582)
T 3b60_A 165 WQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKM 244 (582)
T ss_dssp TTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 040099 285 GLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINR 364 (1236)
Q Consensus 285 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~ 364 (1236)
.+..++..++..++..+..++++|+|++++.+|.+|+|++++++.++.....|+..+...+..++++.++++|+.++++.
T Consensus 245 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~ 324 (582)
T 3b60_A 245 VSASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDS 324 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred CCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 365 KPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 365 ~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
+++.++. ..+.++..+.|+++||+|+|+++ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|
T Consensus 325 ~~~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i 400 (582)
T 3b60_A 325 EQEKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHI 400 (582)
T ss_dssp CCSCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEE
T ss_pred CCCccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeE
Confidence 7654321 11222235679999999999732 2579999999999999999999999999999999999999999999
Q ss_pred EECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCC
Q 040099 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQ 523 (1236)
Q Consensus 445 ~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~ 523 (1236)
.+||+|+++++.+++|++|+||||+|++|++||+|||.++. ++.++++++++++.++++++++++|+|+||.+|++|.+
T Consensus 401 ~~~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~ 480 (582)
T 3b60_A 401 LMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVL 480 (582)
T ss_dssp EETTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCS
T ss_pred EECCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCC
Confidence 99999999999999999999999999999999999999987 67788999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEe
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
||||||||++|||||+++|+|||||||||+||+++++.+.+.|+++.+|+|+|+||||+++++.||+|++|++|+++++|
T Consensus 481 LSgGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 481 LSGGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERG 560 (582)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred CcccccccccchhhhhHHhh
Q 040099 604 THSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 604 ~~~~l~~~~~~~y~~~~~~~ 623 (1236)
+|+|++++ ++.|+++++.|
T Consensus 561 ~~~~l~~~-~~~~~~~~~~q 579 (582)
T 3b60_A 561 THSELLAQ-HGVYAQLHKMQ 579 (582)
T ss_dssp CHHHHHHH-TSSHHHHHHHT
T ss_pred CHHHHHHc-CCHHHHHHHHh
Confidence 99999987 78999998865
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-82 Score=787.52 Aligned_cols=555 Identities=25% Similarity=0.355 Sum_probs=499.9
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.+++++.++++++++++.+++.+..+++++.+++....... ......+..+++++.++..++.+++.++
T Consensus 9 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (587)
T 3qf4_A 9 GGSKTLARYLKPYWIFAVLAPLFMVVEVICDLSQPTLLARIVDEGIARGD--FSLVLKTGILMLIVALIGAVGGIGCTVF 86 (587)
T ss_dssp CCCCCGGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34556677778888888888888888888888999999999887543211 1223344555566667777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
..+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 87 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 164 (587)
T 3qf4_A 87 ASYASQNFGADLRRDLFRKVLSFSISNVNR--FHTSSLITRLTNDVTQLQNLVMMLLRIVVRAPLLFVGGIVMAVSINVK 164 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcc--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999994 889999999999999999999999989999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++.+|++++...++.++.++..++.++..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+...
T Consensus 165 l~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 244 (587)
T 3qf4_A 165 LSSVLIFLIPPIVLLFVWLTKKGNPLFRKIQESTDEVNRVVRENLLGVRVVRAFRREEYENENFRKANESLRRSIISAFS 244 (587)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999888888888888888888889999999999999999999999999999999999999988888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
......++..++..+..++++|+|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.++
T Consensus 245 ~~~~~~~~~~~~~~~~~~~vl~~g~~~v~~g~lt~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 324 (587)
T 3qf4_A 245 LIVFALPLFIFIVNMGMIAVLWFGGVLVRNNQMEIGSIMAYTNYLMQIMFSLMMIGNILNFIVRASASAKRVLEVLNEKP 324 (587)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888999999999999999999999999999999999999999999999999999999999998766
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.... ....++..|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 325 ~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i 402 (587)
T 3qf4_A 325 AIEEADN-ALALPNVEGSVSFENVEFRYFEN-TDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEV 402 (587)
T ss_dssp SCCCCTT-CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEE
T ss_pred ccCCCCC-ccccCCCCCcEEEEEEEEEcCCC-CCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEE
Confidence 5432221 11223456789999999999754 357999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+|+++++.+++|++|+||||||.+|++||+|||. +.+++++++.++|+|+||.+|++|.+|||
T Consensus 403 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~~~~~~~~LSg 482 (587)
T 3qf4_A 403 DELDVRTVKLKDLRGHISAVPQETVLFSGTIKENLKWGREDATDDEIVEAAKIAQIHDFIISLPEGYDSRVERGGRNFSG 482 (587)
T ss_dssp SSSBGGGBCHHHHHHHEEEECSSCCCCSEEHHHHHTTTCSSCCHHHHHHHHHHTTCHHHHHTSSSGGGCEECSSSCSSCH
T ss_pred CCEEcccCCHHHHHhheEEECCCCcCcCccHHHHHhccCCCCCHHHHHHHHHHhCcHHHHHhcccchhhHhcCCCCCcCH
Confidence 999999999999999999999999999999999994 55778899999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.|++.|++..+++|+|+||||+++++.||||+||++|+|+|.|+|+
T Consensus 483 GqrQrv~lARal~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~~~d~i~vl~~G~i~~~g~~~ 562 (587)
T 3qf4_A 483 GQKQRLSIARALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTALLADKILVLHEGKVAGFGTHK 562 (587)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHTTSSEEEEEETTEEEEEECHH
T ss_pred HHHHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhcc
Q 040099 1218 SLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q 1234 (1236)
||+++ ++.|+++++.|
T Consensus 563 el~~~-~~~~~~~~~~~ 578 (587)
T 3qf4_A 563 ELLEH-CKPYREIYESQ 578 (587)
T ss_dssp HHHHH-CHHHHHHHHHH
T ss_pred HHHhC-CcHHHHHHHHH
Confidence 99997 89999999766
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-82 Score=784.32 Aligned_cols=553 Identities=28% Similarity=0.457 Sum_probs=502.5
Q ss_pred chhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 673 VSLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 673 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 752 (1236)
..+++++.+.+++++.++++++++++.+++.+..+++++.+++....... ......+..+++++.++..++.+++.+.
T Consensus 23 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 100 (598)
T 3qf4_B 23 ATLRRLLGYLRPHTFTLIMVFVFVTVSSILGVLSPYLIGKTIDVVFVPRR--FDLLPRYMLILGTIYALTSLLFWLQGKI 100 (598)
T ss_dssp HHHHHHGGGTGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTC--GGGHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35677788888888888888888888888888899999999887643211 2233456666777777888888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
....+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++++++++.++|.
T Consensus 101 ~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 178 (598)
T 3qf4_B 101 MLTLSQDVVFRLRKELFEKLQRVPVGFFDR--TPHGDIISRVINDVDNINNVLGNSIIQFFSGIVTLAGAVIMMFRVNVI 178 (598)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHSCTHHHHH--SCHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHCCCHHHHcC--CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999995 889999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+...
T Consensus 179 l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 258 (598)
T 3qf4_B 179 LSLVTLSIVPLTVLITQIVSSQTRKYFYENQRVLGQLNGIIEEDISGLTVIKLFTREEKEMEKFDRVNESLRKVGTKAQI 258 (598)
T ss_dssp HHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999988888888888888888889999999999999999999999999999999999999998888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
...+...+..++..+..++++++|++++..|.+++|.+++++.+......++..+...+..+..+..+++|+.++++.++
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~~~g~~l~~~g~ls~g~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~~~~ 338 (598)
T 3qf4_B 259 FSGVLPPLMNMVNNLGFALISGFGGWLALKDIITVGTIATFIGYSRQFTRPLNELSNQFNMIQMALASAERIFEILDLEE 338 (598)
T ss_dssp HTTTHHHHHHHHHHHHHHHHHHHHHHHGGGTSSCHHHHHHHHTTTTSSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888889999999999999999999999999988888899999999999999999999999999998766
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.+. ..+.++..|+|+++||+|+|++. .++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 339 ~~~~~~--~~~~~~~~~~i~~~~v~~~y~~~--~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~ 414 (598)
T 3qf4_B 339 EKDDPD--AVELREVRGEIEFKNVWFSYDKK--KPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILV 414 (598)
T ss_dssp CCCCSS--CCCCCSCCCCEEEEEEECCSSSS--SCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEE
T ss_pred CCCCCC--CCCCCCCCCeEEEEEEEEECCCC--CccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEE
Confidence 543211 11223456789999999999743 46999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
||+|+++++.+++|+++++|||||.+|++||+|||. +.++++++++.+|+|+||.+|++|.+|||
T Consensus 415 ~g~~i~~~~~~~~r~~i~~v~Q~~~lf~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSg 494 (598)
T 3qf4_B 415 DGIDIRKIKRSSLRSSIGIVLQDTILFSTTVKENLKYGNPGATDEEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQ 494 (598)
T ss_dssp TTEEGGGSCHHHHHHHEEEECTTCCCCSSBHHHHHHSSSTTCCTTHHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCH
T ss_pred CCEEhhhCCHHHHHhceEEEeCCCccccccHHHHHhcCCCCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCH
Confidence 999999999999999999999999999999999995 34677889999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 495 Gq~Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g~~~ 574 (598)
T 3qf4_B 495 GQRQLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKNADLIIVLRDGEIVEMGKHD 574 (598)
T ss_dssp HHHHHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHHCSEEEEECSSSEEECSCHH
T ss_pred HHHHHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhcc
Q 040099 1218 SLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q 1234 (1236)
||+++ +|.|+++++.|
T Consensus 575 ~l~~~-~~~~~~~~~~~ 590 (598)
T 3qf4_B 575 ELIQK-RGFYYELFTSQ 590 (598)
T ss_dssp HHHHT-TCHHHHHHHHH
T ss_pred HHHhC-CCHHHHHHHHH
Confidence 99996 89999999765
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-81 Score=779.04 Aligned_cols=556 Identities=30% Similarity=0.428 Sum_probs=498.8
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh-HHhhhH----HHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKE-ELMRHS----KHWALMFVALGAASLLTSPLS 749 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~----~~~~~~~~~l~~~~~~~~~~~ 749 (1236)
+++++.+.+++++.++++++++++.++..+..+++++.+++....... ...... ..+...++++.++..++.+++
T Consensus 2 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (578)
T 4a82_A 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (578)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 356677788888888888888888888888888999998887643211 001111 233344455556677788888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 750 MYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKA 829 (1236)
Q Consensus 750 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~ 829 (1236)
.+...+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++.+++.+++++++++.+
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~G~l~~r~~~D~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (578)
T 4a82_A 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYA--NNQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHH--TSCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHc--CCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999 4889999999999999999999988888888889999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHH
Q 040099 830 CWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909 (1236)
Q Consensus 830 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1236)
+|.+++++++.+|++++...++.++.++..++..+..++..+.+.|.++|+++||+|++++++.++|.+..++..+...+
T Consensus 160 ~~~l~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 239 (578)
T 4a82_A 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (578)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhcccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999988888888888888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLID 989 (1236)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 989 (1236)
...+.....++...+..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~v~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~~l~~l~~~~~~~~~~~~s~~ri~~~l~ 319 (578)
T 4a82_A 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (578)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE
Q 040099 990 QVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069 (1236)
Q Consensus 990 ~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~ 1069 (1236)
.+++.+.... ..+.+...|.|+++||+|+|++. +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+
T Consensus 320 ~~~~~~~~~~-~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~ 397 (578)
T 4a82_A 320 EDYDIKNGVG-AQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQ 397 (578)
T ss_dssp CCCSSCCCTT-CCCCCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEE
T ss_pred CCCcccCCCC-ccccCCCCCeEEEEEEEEEcCCC-CCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcE
Confidence 7665432211 11223346789999999999853 356999999999999999999999999999999999999999999
Q ss_pred EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCC
Q 040099 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQ 1134 (1236)
Q Consensus 1070 I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~ 1134 (1236)
|.+||+|+++++.+++|++++||||||.+|++||+|||. +.+++++++.++|+|+||.+|++|.+
T Consensus 398 i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~~~lp~g~~t~~~~~g~~ 477 (578)
T 4a82_A 398 ILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVK 477 (578)
T ss_dssp EEETTEEGGGSCHHHHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTT
T ss_pred EEECCEEhhhCCHHHHhhheEEEeCCCccCcccHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhCcchhhhhhccCCCc
Confidence 999999999999999999999999999999999999994 45778899999999999999999999
Q ss_pred CChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1135 LSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
||||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|
T Consensus 478 LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~~d~i~~l~~G~i~~~g 557 (578)
T 4a82_A 478 LSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETG 557 (578)
T ss_dssp SCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEE
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHcCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999999988899999999999999999999999999999999
Q ss_pred ChhHHhhccCcccHHhhhccC
Q 040099 1215 SHESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1215 t~~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+|+||+++ ++.|+++++.|+
T Consensus 558 ~~~el~~~-~~~~~~~~~~q~ 577 (578)
T 4a82_A 558 THRELIAK-QGAYEHLYSIQN 577 (578)
T ss_dssp CHHHHHHT-TSHHHHHHTTTT
T ss_pred CHHHHHhC-CcHHHHHHHhhc
Confidence 99999996 899999998875
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-81 Score=839.11 Aligned_cols=580 Identities=35% Similarity=0.603 Sum_probs=520.5
Q ss_pred chHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 45 IPFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQ 124 (1236)
Q Consensus 45 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (1236)
..+++++++.+++++ .++++++++++.+++.|..+++++.+++.+...............+..++++++++..++.+++
T Consensus 691 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~ 769 (1284)
T 3g5u_A 691 ASFWRILKLNSTEWP-YFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNGGPPETQRQNSNLFSLLFLILGIISFITFFLQ 769 (1284)
T ss_dssp CCTTHHHHHHHHTCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHhcchHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456778888777644 4567777888888899999999999998764321111111223344556667777788888999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhc--cCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 125 VACWMITGERQAARIRSFYLETILRQDIAFFDK--EINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFF 202 (1236)
Q Consensus 125 ~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~--~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 202 (1236)
.++..+.++++..++|.++|+|++++|++||++ + ++|++++|+++|++.+++.+...+..++..++.++++++++++
T Consensus 770 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~ff~~~~~-~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~ 848 (1284)
T 3g5u_A 770 GFTFGKAGEILTKRLRYMVFKSMLRQDVSWFDDPKN-TTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLI 848 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCSHHHHSCSC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHcCCCC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999994 6 8999999999999999999999999999999999999999999
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHH
Q 040099 203 KGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSV 282 (1236)
Q Consensus 203 ~~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~ 282 (1236)
++|++++++++++|+++++.++..++.++...+.++..+.....+.|+++|+++||+|++|+.+.++|.+..+...+...
T Consensus 849 ~~~~l~lv~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~~e~~~~~~~~~~~~~~~~~~~ 928 (1284)
T 3g5u_A 849 YGWQLTLLLLAIVPIIAIAGVVEMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLTREQKFETMYAQSLQIPYRNAM 928 (1284)
T ss_dssp SCSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 283 QEGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAI 362 (1236)
Q Consensus 283 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l 362 (1236)
+.....+...++...+.++.+++++|+|++++..|.+++|.++.++.++.....|+..+......++++..+++|+++++
T Consensus 929 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l 1008 (1284)
T 3g5u_A 929 KKAHVFGITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRII 1008 (1284)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999988888888888888888888999999999999999
Q ss_pred ccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 363 NRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
+.+|+.+.....+..++...+.|+++||+|+|+++++.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|
T Consensus 1009 ~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G 1088 (1284)
T 3g5u_A 1009 EKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAG 1088 (1284)
T ss_dssp HSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEE
T ss_pred cCCCcccccccccccccCCCCcEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCC
Confidence 98776543221222233446789999999999865445799999999999999999999999999999999999999999
Q ss_pred EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCC
Q 040099 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH 520 (1236)
Q Consensus 443 ~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~ 520 (1236)
+|.+||+|+++++.+++|++|+||||||.+|++||+|||.+|.+ ..++++++++++.+++++++.++|+||||.+||+
T Consensus 1089 ~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~vge~ 1168 (1284)
T 3g5u_A 1089 SVFLDGKEIKQLNVQWLRAQLGIVSQEPILFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTRVGDK 1168 (1284)
T ss_dssp EEESSSSCTTSSCHHHHTTSCEEEESSCCCCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCBCSTT
T ss_pred EEEECCEEcccCCHHHHHhceEEECCCCccccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccccCCC
Confidence 99999999999999999999999999999999999999999875 3678999999999999999999999999999999
Q ss_pred CCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEE
Q 040099 521 GIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIV 600 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~ 600 (1236)
|.+|||||||||+|||||+++|+|||||||||+||+++++.|++.|++..+|+|+|+||||+++++.||||+||++|+|+
T Consensus 1169 G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~~~dri~vl~~G~i~ 1248 (1284)
T 3g5u_A 1169 GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQNADLIVVIQNGKVK 1248 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGGSCSEEEEEETBEEE
T ss_pred CCccCHHHHHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHHcCCEEEEEECCEEE
Confidence 99999999999999999999999999999999999999999999999988899999999999999999999999999999
Q ss_pred EEeCcccccccccchhhhhHHhhhhhh
Q 040099 601 EKGTHSELLENPYGAYNRLIRLQETCK 627 (1236)
Q Consensus 601 ~~g~~~~l~~~~~~~y~~~~~~~~~~~ 627 (1236)
+.|+|+|++++ +|.|+++++.|....
T Consensus 1249 ~~g~~~~l~~~-~g~y~~l~~~q~~~~ 1274 (1284)
T 3g5u_A 1249 EHGTHQQLLAQ-KGIYFSMVSVQAGAK 1274 (1284)
T ss_dssp EEECHHHHHHS-CSHHHHHHHHHC---
T ss_pred EECCHHHHHhC-CCHHHHHHHHHhhcc
Confidence 99999999998 799999999876443
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-79 Score=761.37 Aligned_cols=551 Identities=31% Similarity=0.450 Sum_probs=492.4
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWA-LMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
+++++.+.++.++.+.++++++++.+++.+..+++++.+++....... . ....+. ..++++.++..++.++..+..
T Consensus 13 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (582)
T 3b5x_A 13 FKRLWTYIRLYKAGLVVSTIALVINAAADTYMISLLKPLLDEGFGNAE--S-NFLRILPFMILGLMFVRGLSGFASSYCL 89 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777788888888888888888876542211 1 112222 235556667778888888999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.++..++|.++|++++++|++||+ ++++|++++|+++|++.++..+...+..++..++.++++++++++++|.+
T Consensus 90 ~~~~~~~~~~lr~~l~~~ll~~~~~~~~--~~~~g~l~~rl~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~l 167 (582)
T 3b5x_A 90 SWVSGNVVMQMRRRLFNHFMHMPVRFFD--QESTGGLLSRITYDSEQVAGATSRALVSIVREGASIIGLLTLMFWNSWQL 167 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCHHHHC--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Confidence 9999999999999999999999999999 47899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+....
T Consensus 168 ~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 247 (582)
T 3b5x_A 168 SLVLIVVAPVVAFAISFVSKRFRKISRNMQTAMGHVTSSAEQMLKGHKVVLSYGGQEVERKRFDKVSNSMRQQTMKLVSA 247 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999988888888888888888888889999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..+...+..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+.++..+++|+.++++.+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~i~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~~ 327 (582)
T 3b5x_A 248 QSIADPVIQMIASLALFAVLFLASVDSIRAELTPGTFTVVFSAMFGLMRPLKALTSVTSEFQRGMAACQTLFGLMDLETE 327 (582)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCc
Confidence 88888888888889999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 994 IDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 994 ~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+.. ..+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+|
T Consensus 328 ~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~ 403 (582)
T 3b5x_A 328 RDNG---KYEAERVNGEVDVKDVTFTYQGK-EKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLD 403 (582)
T ss_pred CCCC---CCCCCCCCCeEEEEEEEEEcCCC-CccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEEC
Confidence 3211 11112235789999999999753 2469999999999999999999999999999999999999999999999
Q ss_pred CeecccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCCh
Q 040099 1074 GVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSG 1137 (1236)
Q Consensus 1074 G~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSG 1137 (1236)
|+|+++++.+++|++++||||||.+|++||+|||. +.++++++++++|+|+||.+|++|.+|||
T Consensus 404 g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSg 483 (582)
T 3b5x_A 404 GHDVRDYKLTNLRRHFALVSQNVHLFNDTIANNIAYAAEGEYTREQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSG 483 (582)
T ss_pred CEEhhhCCHHHHhcCeEEEcCCCccccccHHHHHhccCCCCCCHHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCH
Confidence 99999999999999999999999999999999994 34677889999999999999999999999
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChh
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHE 1217 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~ 1217 (1236)
|||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|+
T Consensus 484 Gq~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~~ 563 (582)
T 3b5x_A 484 GQRQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIEQADEILVVDEGEIIERGRHA 563 (582)
T ss_pred HHHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHhCCEEEEEECCEEEEECCHH
Confidence 99999999999999999999999999999999999999999988899999999999999999999999999999999999
Q ss_pred HHhhccCcccHHhhhccC
Q 040099 1218 SLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1218 eLl~~~~g~y~~L~~~q~ 1235 (1236)
||+++ ++.|+++++.|.
T Consensus 564 ~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b5x_A 564 DLLAQ-DGAYAQLHRIQF 580 (582)
T ss_pred HHHhC-CcHHHHHHHHhh
Confidence 99986 889999998773
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-79 Score=761.12 Aligned_cols=552 Identities=32% Similarity=0.512 Sum_probs=493.6
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWA-LMFVALGAASLLTSPLSMYC 752 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~ 752 (1236)
.+++++.+.++.++.+.++++++++.+++.+..+++++.+++....... . ....+. ..++++.++..++.+++.+.
T Consensus 12 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (582)
T 3b60_A 12 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--R-SVLLWMPLVVIGLMILRGITSYISSYC 88 (582)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--H-HHHHHSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc--h-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666677777777778888888888888888888888876543211 1 112222 33455666777888888899
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Q 040099 753 FAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQ 832 (1236)
Q Consensus 753 ~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~ 832 (1236)
..+.+.++..++|.++|++++++|++||++ +++|++++|+++|++.++..+...+..++..++.+++.++++++++|.
T Consensus 89 ~~~~~~~~~~~lr~~l~~~l~~~~~~~~~~--~~~g~l~~r~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~~~~ 166 (582)
T 3b60_A 89 ISWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQ 166 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCHHHHCC--CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHH
Confidence 999999999999999999999999999994 789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHH
Q 040099 833 LALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGL 912 (1236)
Q Consensus 833 l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~ 912 (1236)
+++++++++|+++++..++.+..++..++.++..++..+.+.|.++|+++||+|+.++++.++|.+..++..+...+...
T Consensus 167 l~li~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~Ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~ 246 (582)
T 3b60_A 167 LSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVS 246 (582)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999998888888888888888888888999999999999999999999999999999999999999999988
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 040099 913 MSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVS 992 (1236)
Q Consensus 913 ~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~ 992 (1236)
...+..++..++..+..++++++|++++..|.+++|.++++..+......++..+...+..+..+..+++|+.++++.++
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~lt~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~a~~ri~~~l~~~~ 326 (582)
T 3b60_A 247 ASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQ 326 (582)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 88888888888888888899999999999999999999999999999999999999999999999999999999998765
Q ss_pred ccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 993 KIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 993 ~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
+.+.. ..+.++..+.|+++||+|+|+++ +.++|+|+||+|++||++|||||||||||||+++|.|+|+|++|+|.+
T Consensus 327 ~~~~~---~~~~~~~~~~i~~~~v~~~y~~~-~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~ 402 (582)
T 3b60_A 327 EKDEG---KRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILM 402 (582)
T ss_dssp SCCCC---CBCCSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEE
T ss_pred CccCC---CCCCCCCCCcEEEEEEEEEcCCC-CCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEE
Confidence 43221 11122335789999999999743 246999999999999999999999999999999999999999999999
Q ss_pred CCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCC
Q 040099 1073 DGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLS 1136 (1236)
Q Consensus 1073 dG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LS 1136 (1236)
||+|+++++.+++|++++||||||.+|++||+|||. +.++++++++++|+|+||.+|++|.+||
T Consensus 403 ~g~~~~~~~~~~~~~~i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~l~~~~l~~~~~~~p~g~~~~~~~~~~~LS 482 (582)
T 3b60_A 403 DGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLS 482 (582)
T ss_dssp TTEETTTBCHHHHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSC
T ss_pred CCEEccccCHHHHHhhCeEEccCCcCCCCCHHHHHhccCCCCCCHHHHHHHHHHcCCHHHHHhccccccccccCCCCCCC
Confidence 999999999999999999999999999999999994 3457788999999999999999999999
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
||||||+||||||+++|+|||||||||+||+++++.+++.|++..+++|+|+||||+++++.||+|+||++|+|+|.|+|
T Consensus 483 gGq~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~~~d~i~~l~~G~i~~~g~~ 562 (582)
T 3b60_A 483 GGQRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTH 562 (582)
T ss_dssp HHHHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECH
T ss_pred HHHHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHhCCEEEEEECCEEEEecCH
Confidence 99999999999999999999999999999999999999999998889999999999999999999999999999999999
Q ss_pred hHHhhccCcccHHhhhccC
Q 040099 1217 ESLISTKNGIYTSLIEPHT 1235 (1236)
Q Consensus 1217 ~eLl~~~~g~y~~L~~~q~ 1235 (1236)
+||+++ ++.|+++++.|.
T Consensus 563 ~~l~~~-~~~~~~~~~~q~ 580 (582)
T 3b60_A 563 SELLAQ-HGVYAQLHKMQF 580 (582)
T ss_dssp HHHHHH-TSSHHHHHHHTC
T ss_pred HHHHHc-CCHHHHHHHHhc
Confidence 999986 899999998774
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-66 Score=636.16 Aligned_cols=438 Identities=22% Similarity=0.312 Sum_probs=320.9
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE---------EECCeecCCCCHHH
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV---------LIDGVNLKEFQLKW 458 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i---------~~~g~~~~~~~~~~ 458 (1236)
+|++++|++ ...+|+|+| ++++||++||+||||||||||+++|+|+++|++|++ .++|.++.+.....
T Consensus 95 ~~ls~~yg~--~~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~~~~~G~~~~~~~~~~ 171 (607)
T 3bk7_A 95 EDCVHRYGV--NAFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERL 171 (607)
T ss_dssp GSEEEECST--TCCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHHHHTTTSTHHHHHHHH
T ss_pred CCeEEEECC--CCeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhhheeCCEehhhhhhhh
Confidence 899999963 225899999 999999999999999999999999999999999996 45665543321111
Q ss_pred --HhcceEEEccCCC----CCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 459 --IREKIGLVSQEPV----LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 459 --~r~~i~~v~Q~~~----l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
.+..+++++|+.. ++.+|++||+..... .+++.++++..++ +........+||||||||+
T Consensus 172 ~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~---~~~~~~~L~~lgL-----------~~~~~~~~~~LSGGekQRv 237 (607)
T 3bk7_A 172 KNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVDE---VGKFEEVVKELEL-----------ENVLDRELHQLSGGELQRV 237 (607)
T ss_dssp HHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTCC---SSCHHHHHHHTTC-----------TTGGGSBGGGCCHHHHHHH
T ss_pred hhhhcceEEeechhhhchhhccccHHHHhhhhHH---HHHHHHHHHHcCC-----------CchhCCChhhCCHHHHHHH
Confidence 2346889998743 345699999975321 2344555555544 3334444568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+|||||+.+|++||||||||+||+.+...+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|+++.. ..|.. .
T Consensus 238 aIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl~~~~~-~~g~~---~- 312 (607)
T 3bk7_A 238 AIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVVYGEPG-VYGIF---S- 312 (607)
T ss_dssp HHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEESCTT-TEEEE---C-
T ss_pred HHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEECCCcc-cccee---c-
Confidence 999999999999999999999999999999999998854 8899999999999865 999999975421 00100 0
Q ss_pred cccchhhhhHHhhhhhhcccccccCCCCCCCCCCCCCCCCCCCCCCcCCCCccccccCCCCcchhHHHhhhcCCchHHHH
Q 040099 611 NPYGAYNRLIRLQETCKESEKSAVNNSDSDNQPFASPKITTPKQSETESDFPASEKAKMPPDVSLSRLAYLNSPEVPALL 690 (1236)
Q Consensus 611 ~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 690 (1236)
.+... ...
T Consensus 313 ~~~~~------------------------------------------------------------~~~------------ 320 (607)
T 3bk7_A 313 KPKGT------------------------------------------------------------RNG------------ 320 (607)
T ss_dssp CCEEH------------------------------------------------------------HHH------------
T ss_pred cchhH------------------------------------------------------------HHH------------
Confidence 00000 000
Q ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 691 LGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCFAVAGCKLIKRIRSMCFE 770 (1236)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~lr~~~~~ 770 (1236)
+ .........
T Consensus 321 ---i----------------~~~~~~~~~--------------------------------------------------- 330 (607)
T 3bk7_A 321 ---I----------------NEFLQGYLK--------------------------------------------------- 330 (607)
T ss_dssp ---H----------------HHHHHTEET---------------------------------------------------
T ss_pred ---H----------------HHHHhhcch---------------------------------------------------
Confidence 0 000000000
Q ss_pred HHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Q 040099 771 KVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQLALLVLAIFPLLGITGHI 850 (1236)
Q Consensus 771 ~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l~lv~l~~~pl~~~~~~~ 850 (1236)
..... +.
T Consensus 331 ---~~~~~-~~--------------------------------------------------------------------- 337 (607)
T 3bk7_A 331 ---DENVR-FR--------------------------------------------------------------------- 337 (607)
T ss_dssp ---TTTEE-CC---------------------------------------------------------------------
T ss_pred ---hhhhh-cc---------------------------------------------------------------------
Confidence 00000 00
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 851 QMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLMSGIGFGLSFFFFFMAYA 930 (1236)
Q Consensus 851 ~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 930 (1236)
T Consensus 338 -------------------------------------------------------------------------------- 337 (607)
T 3bk7_A 338 -------------------------------------------------------------------------------- 337 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCcccc
Q 040099 931 VTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGE 1010 (1236)
Q Consensus 931 ~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~ 1010 (1236)
..+........ .......-.
T Consensus 338 ----------------------------------------------------------~~~~~~~~~~~--~~~~~~~~~ 357 (607)
T 3bk7_A 338 ----------------------------------------------------------PYEIRFTKLSE--RVDVERETL 357 (607)
T ss_dssp ----------------------------------------------------------SSCCCCCCSTT--SCCCCCCEE
T ss_pred ----------------------------------------------------------ccccccccCCC--cccccCceE
Confidence 00000000000 000001124
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.+++
T Consensus 358 l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~-------------~~~i~ 420 (607)
T 3bk7_A 358 VEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW-------------DLTVA 420 (607)
T ss_dssp EEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC-------------CCCEE
T ss_pred EEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE-------------eeEEE
Confidence 889999999963 2689999999999999999999999999999999999999999986 24699
Q ss_pred EEcCCCCC-ChhhHHHHHHHH-h-h------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1091 VVSQEPVL-FSDTIRANIAEM-A-N------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1091 ~V~Qdp~L-F~gTIreNL~~~-a-~------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
|+||++.+ ++.|++||+... . . +.+.+..+ |++........+||||||||++|||||+++|+|||||||
T Consensus 421 ~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGe~QRv~iAraL~~~p~lLlLDEP 498 (607)
T 3bk7_A 421 YKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL--GIIDLYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEP 498 (607)
T ss_dssp EECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH--TCTTTTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECT
T ss_pred EEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCC
Confidence 99999865 567999998532 1 1 11222222 444444556678999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 040099 1162 TSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIS 1221 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++.
T Consensus 499 t~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 499 SAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 99999999999999999874 48899999999999975 999999996 88889999999876
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-65 Score=626.84 Aligned_cols=196 Identities=27% Similarity=0.354 Sum_probs=164.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 4889999999953 2689999999999999999999999999999999999999999986 2469
Q ss_pred EEEcCCCCC-ChhhHHHHHHHH-h-hh--chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEM-A-NA--NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~-a-~~--~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
+||||++.+ +..|+.||+... . .. .+.+..+- -|+.........+||||||||++|||||+++|++|||||||
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGe~qrv~lAraL~~~p~lLlLDEPt 429 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKPLGIIDLYDREVNELSGGELQRVAIAATLLRDADIYLLDEPS 429 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHTTTTTTCGGGTTSBGGGCCHHHHHHHHHHHHHTSCCSEEEEECTT
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHcCChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCc
Confidence 999999976 567999988532 1 10 11121111 14444455666789999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 040099 1163 SALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIST 1222 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~~ 1222 (1236)
++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |++++.|+|++++..
T Consensus 430 ~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~~ 494 (538)
T 1yqt_A 430 AYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMREG 494 (538)
T ss_dssp TTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHhh
Confidence 9999999999999999874 38899999999999975 999999996 788899999998763
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-64 Score=636.98 Aligned_cols=197 Identities=26% Similarity=0.341 Sum_probs=161.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..+...|++++|+ ++.+|+|+||+|++|++++|+||||||||||+++|+| |+| +|.+... +.+
T Consensus 434 ~~L~~~~ls~~yg---~~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~~------~~~ 496 (986)
T 2iw3_A 434 EDLCNCEFSLAYG---AKILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQE------ECR 496 (986)
T ss_dssp CEEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCTT------TSC
T ss_pred ceeEEeeEEEEEC---CEEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCcccc------cee
Confidence 3688889999995 3469999999999999999999999999999999996 554 5544321 124
Q ss_pred eEEEccCC-CCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccH-HHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEP-VLL-SSSIRDNIAYGKTHATKEEIQAAAEAANAS-HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~-~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~-~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++|++|++ .++ ..|+.||+.+..... .+++.++++..++. ++..+ ...+||||||||++|||||+
T Consensus 497 ~~~v~q~~~~~~~~ltv~e~l~~~~~~~-~~~v~~~L~~lgL~~~~~~~-----------~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 497 TVYVEHDIDGTHSDTSVLDFVFESGVGT-KEAIKDKLIEFGFTDEMIAM-----------PISALSGGWKMKLALARAVL 564 (986)
T ss_dssp EEETTCCCCCCCTTSBHHHHHHTTCSSC-HHHHHHHHHHTTCCHHHHHS-----------BGGGCCHHHHHHHHHHHHHH
T ss_pred EEEEcccccccccCCcHHHHHHHhhcCH-HHHHHHHHHHcCCChhhhcC-----------CcccCCHHHHHHHHHHHHHh
Confidence 79999985 444 459999998621112 56677777777763 34333 23479999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECCEEE-EEeCcccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIV-EKGTHSELLE 610 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~-~~g~~~~l~~ 610 (1236)
.+|+||||||||++||+.+..++.+.|++ .|+|+|+|||+++.+.. ||+|++|++|+++ ..|++++++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~~~G~~~e~~~ 635 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRKYKGNFTEFVK 635 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEEEESCHHHHHH
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeecCCCCHHHHHh
Confidence 99999999999999999999999999988 68999999999999975 9999999999997 5788777653
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-64 Score=637.83 Aligned_cols=202 Identities=24% Similarity=0.387 Sum_probs=136.2
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHH---------------------HHHHcCCCCC-------CcEEEECCeec
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVI---------------------SLIQRFYDPQ-------AGEVLIDGVNL 451 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~---------------------~ll~~~~~~~-------~G~i~~~g~~~ 451 (1236)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4699999999999999999999999999998 8999999998 45556666544
Q ss_pred CCCCHHHHhcceEEEccCCCC--------------------CchhHHHHHhcCCCC-CCH--HH-----HHHHHHHhccH
Q 040099 452 KEFQLKWIREKIGLVSQEPVL--------------------LSSSIRDNIAYGKTH-ATK--EE-----IQAAAEAANAS 503 (1236)
Q Consensus 452 ~~~~~~~~r~~i~~v~Q~~~l--------------------~~~ti~~ni~~g~~~-~~~--~~-----~~~~~~~~~~~ 503 (1236)
.. ..++.+++|+|.+.+ ...|++||+.+.... ... .+ ..++.+..
T Consensus 111 ~~----~~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 183 (670)
T 3ux8_A 111 SR----NPRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRL--- 183 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHH---
T ss_pred hc----cchhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHH---
Confidence 32 224456666665433 234899999874211 111 11 11111111
Q ss_pred HHHHhCCCCcccc-ccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEe
Q 040099 504 HFIKNLPQGLDTN-VGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVS 579 (1236)
Q Consensus 504 ~~i~~l~~g~~t~-~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 579 (1236)
+.+..+ |++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+..++.+.|+++. +|.|+|+||
T Consensus 184 ~~l~~~--gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vt 261 (670)
T 3ux8_A 184 GFLQNV--GLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVE 261 (670)
T ss_dssp HHHHHT--TCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEEC
T ss_pred HHHHHc--CCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEe
Confidence 223333 44432 345567899999999999999999998 999999999999999999999999885 478999999
Q ss_pred cCchhHhhcCeEEEE------ECCEEEEEeCcccccc
Q 040099 580 HRLSLIRNANIIAVI------QQGKIVEKGTHSELLE 610 (1236)
Q Consensus 580 H~~~~~~~ad~i~vl------~~G~i~~~g~~~~l~~ 610 (1236)
|+++.+..||+|++| ++|++++.|+++++..
T Consensus 262 Hd~~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~ 298 (670)
T 3ux8_A 262 HDEDTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVMN 298 (670)
T ss_dssp CCHHHHHHCSEEEEECSSSGGGCCSEEEEECHHHHHT
T ss_pred CCHHHHhhCCEEEEecccccccCCEEEEecCHHHHhc
Confidence 999988889999999 8999999998887754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-63 Score=561.49 Aligned_cols=279 Identities=41% Similarity=0.638 Sum_probs=252.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCC
Q 040099 343 PCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTS 422 (1236)
Q Consensus 343 ~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~s 422 (1236)
+.+..++++.++++|++++++.+++..... ...+.+...+.|+++||+|+|++ ++++|+||||+|++||++||||||
T Consensus 13 ~~~~~~~~~~~~~~ri~~~l~~~~~~~~~~-~~~~~~~~~~~i~~~~vs~~y~~--~~~vL~~isl~i~~Ge~vaivG~s 89 (306)
T 3nh6_A 13 GLVPRGSHMFIDMENMFDLLKEETEVKDLP-GAGPLRFQKGRIEFENVHFSYAD--GRETLQDVSFTVMPGQTLALVGPS 89 (306)
T ss_dssp ------CCTTCCHHHHHHHHHHHHSCCCCT-TCBCCCCSSCCEEEEEEEEESST--TCEEEEEEEEEECTTCEEEEESSS
T ss_pred ccchhHHHHHHHHHHHHHHHhCCccccccc-cccccCCCCCeEEEEEEEEEcCC--CCceeeeeeEEEcCCCEEEEECCC
Confidence 345678889999999999998766543221 11222234578999999999973 357999999999999999999999
Q ss_pred CCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhcc
Q 040099 423 GSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANA 502 (1236)
Q Consensus 423 GsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~ 502 (1236)
|||||||+++|+|+|+|++|+|.+||+|+.+++..++|++||||+|+|++|++||+|||.+|.+..++++++++++.+++
T Consensus 90 GsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l 169 (306)
T 3nh6_A 90 GAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGI 169 (306)
T ss_dssp CHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTC
T ss_pred CchHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999988889999999999999
Q ss_pred HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCc
Q 040099 503 SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRL 582 (1236)
Q Consensus 503 ~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~ 582 (1236)
++++..+|+||+|.+|++|.+|||||||||+|||||+++|+|||||||||+||+.++..|++.|+++.+++|+|+||||+
T Consensus 170 ~~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l 249 (306)
T 3nh6_A 170 HDAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249 (306)
T ss_dssp HHHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSH
T ss_pred HHHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcCh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998899999999999
Q ss_pred hhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhhh
Q 040099 583 SLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQET 625 (1236)
Q Consensus 583 ~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~~ 625 (1236)
+++..||+|++|++|+|+++|+|+++++. ++.|+++|..|..
T Consensus 250 ~~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q~~ 291 (306)
T 3nh6_A 250 STVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQQG 291 (306)
T ss_dssp HHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHHHC
T ss_pred HHHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHHHh
Confidence 99999999999999999999999999987 7999999987753
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9e-63 Score=600.60 Aligned_cols=196 Identities=22% Similarity=0.286 Sum_probs=162.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.++++|++.+|.+ ..|+++||+|++||++||+||||||||||+++|.|+++|++|+|.++| +.+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 4789999999963 358888999999999999999999999999999999999999999875 358
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHhhh-----chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMANA-----NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a~~-----~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
+++||++.. |..|+++|+...... ...+..+- -|++........+||||||||++|||||+++|+|||||||
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSGGq~QRv~iAraL~~~p~lLlLDEP 412 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRLNLHRLLESNVNDLSGGELQKLYIAATLAKEADLYVLDQP 412 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTTTGGGCTTSBGGGCCHHHHHHHHHHHHHHSCCSEEEEEST
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHcCCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEeCC
Confidence 999999864 578999998642110 01111111 1444445566778999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhh
Q 040099 1162 TSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIS 1221 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |++...++|.++..
T Consensus 413 T~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~~ 477 (538)
T 3ozx_A 413 SSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLKT 477 (538)
T ss_dssp TTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred ccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHHH
Confidence 99999999999999999875 47899999999999976 999999986 56677778766543
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-62 Score=600.41 Aligned_cols=192 Identities=26% Similarity=0.410 Sum_probs=160.1
Q ss_pred eEEEEECCCCCCcccccceeEEecCC-----CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPG-----KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~G-----e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
++++|+|+.. ..+++|+||++++| |++||+||||||||||+++|.|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~~--~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPSL--KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECCE--EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecCc--ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 5678889753 34799999999999 8899999999999999999999999999962 21 346
Q ss_pred eEEEcCCCC-CChhhHHHHHHHHhh--------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1089 MGVVSQEPV-LFSDTIRANIAEMAN--------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1089 i~~V~Qdp~-LF~gTIreNL~~~a~--------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
++++||++. .|++|+++|+..... ..+.++.+ |+.........+||||||||++|||||+.+|+|||||
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l--~l~~~~~~~~~~LSGGqkQRv~iAraL~~~p~lLlLD 492 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPL--RIDDIIDQEVQHLSGGELQRVAIVLALGIPADIYLID 492 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHH--TSTTTSSSBSSSCCHHHHHHHHHHHHTTSCCSEEEEC
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 999999974 567899999853211 01112111 3444455667789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeC--CEEEEecChhHHhhc
Q 040099 1160 EATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQ--GMIVEKGSHESLIST 1222 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~--G~Ive~Gt~~eLl~~ 1222 (1236)
|||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||+||++ |+++..|+|++++..
T Consensus 493 EPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 493 EPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp CTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999998864 48999999999999976 999999997 999999999999875
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-61 Score=543.54 Aligned_cols=261 Identities=46% Similarity=0.722 Sum_probs=234.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCC
Q 040099 970 LASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESG 1049 (1236)
Q Consensus 970 ~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SG 1049 (1236)
++++++++..+++|++++++.+++...... ..+.+...|.|+|+||+|+|++. .++|+||||+|++||++|||||||
T Consensus 14 ~~~~~~~~~~~~~ri~~~l~~~~~~~~~~~-~~~~~~~~~~i~~~~vs~~y~~~--~~vL~~isl~i~~Ge~vaivG~sG 90 (306)
T 3nh6_A 14 LVPRGSHMFIDMENMFDLLKEETEVKDLPG-AGPLRFQKGRIEFENVHFSYADG--RETLQDVSFTVMPGQTLALVGPSG 90 (306)
T ss_dssp -----CCTTCCHHHHHHHHHHHHSCCCCTT-CBCCCCSSCCEEEEEEEEESSTT--CEEEEEEEEEECTTCEEEEESSSC
T ss_pred cchhHHHHHHHHHHHHHHHhCCcccccccc-ccccCCCCCeEEEEEEEEEcCCC--CceeeeeeEEEcCCCEEEEECCCC
Confidence 456778888899999999987765432211 11122345789999999999743 469999999999999999999999
Q ss_pred CChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH---------------HHhhhc
Q 040099 1050 SGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANAN 1114 (1236)
Q Consensus 1050 SGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~ 1114 (1236)
||||||+++|+|+|+|++|+|++||.|+++++...+|++|+||||+|.+|++||+|||. +.++++
T Consensus 91 sGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~~~~r~~i~~v~Q~~~lf~~Tv~eNi~~~~~~~~~~~~~~~~~~~~l~ 170 (306)
T 3nh6_A 91 AGKSTILRLLFRFYDISSGCIRIDGQDISQVTQASLRSHIGVVPQDTVLFNDTIADNIRYGRVTAGNDEVEAAAQAAGIH 170 (306)
T ss_dssp HHHHHHHHHHTTSSCCSEEEEEETTEETTSBCHHHHHHTEEEECSSCCCCSEEHHHHHHTTSTTCCHHHHHHHHHHHTCH
T ss_pred chHHHHHHHHHcCCCCCCcEEEECCEEcccCCHHHHhcceEEEecCCccCcccHHHHHHhhcccCCHHHHHHHHHHhCcH
Confidence 99999999999999999999999999999999999999999999999999999999994 567788
Q ss_pred hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch
Q 040099 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194 (1236)
Q Consensus 1115 ~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ 1194 (1236)
+++..+|+||+|.+|++|.+||||||||+||||||+++|+|||||||||+||+.+++.|++.|++..+++|+|+||||++
T Consensus 171 ~~i~~lp~gl~t~~~~~g~~LSGGqrQRvaiARAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~ 250 (306)
T 3nh6_A 171 DAIMAFPEGYRTQVGERGLKLSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLS 250 (306)
T ss_dssp HHHHHSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHH
T ss_pred HHHHhccchhhhHhcCCcCCCCHHHHHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChH
Confidence 99999999999999999999999999999999999999999999999999999999999999999888999999999999
Q ss_pred hhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1195 TIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1195 ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
++..||+|+||++|+|+|.|+|++|+++ ++.|++|++.|
T Consensus 251 ~~~~aD~i~vl~~G~iv~~G~~~el~~~-~~~y~~l~~~q 289 (306)
T 3nh6_A 251 TVVNADQILVIKDGCIVERGRHEALLSR-GGVYADMWQLQ 289 (306)
T ss_dssp HHHTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHHH
T ss_pred HHHcCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHHH
Confidence 9999999999999999999999999996 89999999765
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-53 Score=466.54 Aligned_cols=240 Identities=46% Similarity=0.749 Sum_probs=223.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
.+|+++||+|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++
T Consensus 6 ~~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~ 84 (247)
T 2ff7_A 6 HDITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQ 84 (247)
T ss_dssp EEEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHH
T ss_pred CceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhc
Confidence 479999999999521 3579999999999999999999999999999999999999999999999999998888888999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
||||+|++.+|+.||+|||.++.+..+++++.++++.+++.+++.++|.|+++.+++++.+||||||||++|||||+++|
T Consensus 85 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p 164 (247)
T 2ff7_A 85 VGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNP 164 (247)
T ss_dssp EEEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999987656778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
++||||||||+||+.+++.+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++..+.+.|.+++..
T Consensus 165 ~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~ 244 (247)
T 2ff7_A 165 KILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQL 244 (247)
T ss_dssp SEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHH
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHh
Confidence 99999999999999999999999999877899999999999988899999999999999999999987656788887764
Q ss_pred h
Q 040099 623 Q 623 (1236)
Q Consensus 623 ~ 623 (1236)
+
T Consensus 245 ~ 245 (247)
T 2ff7_A 245 Q 245 (247)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-52 Score=461.25 Aligned_cols=240 Identities=46% Similarity=0.778 Sum_probs=222.3
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+|+|++...+++|+|+||+|++||++||+||||||||||+++|+|+++| +|+|.++|+++.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 459999999999743224699999999999999999999999999999999999987 8999999999988888888999
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|+|.+|+.||+|||.++.+...++++.++++.+++.+++..+|+|++|.+++++.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999999986555677888999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 543 RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
+|||||||||+||+.++..+.+.|+++.+++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999888999999999999999999999876 5788888776
Q ss_pred hh
Q 040099 623 QE 624 (1236)
Q Consensus 623 ~~ 624 (1236)
+.
T Consensus 254 ~~ 255 (260)
T 2ghi_A 254 QS 255 (260)
T ss_dssp HH
T ss_pred hh
Confidence 53
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-51 Score=459.53 Aligned_cols=241 Identities=44% Similarity=0.744 Sum_probs=219.8
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 461 (1236)
.+.|+++||+|+|++.+++++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 35699999999996422357999999999999999999999999999999999999999999999999998888888889
Q ss_pred ceEEEccCCCCCchhHHHHHhcCCCCCCH-HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 462 KIGLVSQEPVLLSSSIRDNIAYGKTHATK-EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+|+||+|++.+|+.||+|||.++.+.... +++.++++..++.+++..+|+|+++.+++++.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 99999999999999999999998654443 66777888889999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNR 618 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~ 618 (1236)
+|+|||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999999854 7899999999999888999999999999999999999876 578888
Q ss_pred hHHhh
Q 040099 619 LIRLQ 623 (1236)
Q Consensus 619 ~~~~~ 623 (1236)
++..+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 77654
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-51 Score=452.22 Aligned_cols=225 Identities=46% Similarity=0.796 Sum_probs=208.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
+|+++||+++|++. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+++...+|++|
T Consensus 7 ~~~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~~~~~~~i 85 (247)
T 2ff7_A 7 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 85 (247)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred ceeEEEEEEEeCCC-CcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhcE
Confidence 69999999999521 23699999999999999999999999999999999999999999999999999998888899999
Q ss_pred EEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|.+|++|++||+. +.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 86 ~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qRv~iAraL~~~p~ 165 (247)
T 2ff7_A 86 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 165 (247)
T ss_dssp EEECSSCCCTTSBHHHHHTTTCTTCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEeCCCccccccHHHHHhccCCCCCHHHHHHHHHHhChHHHHHhCcchhhhhhhCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 9999999999999999994 2356677888899999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+++++++.+.+.|++++..|
T Consensus 166 lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~~~~~~~~l~~~~ 245 (247)
T 2ff7_A 166 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 245 (247)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHTSTTCHHHHHHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCchHHHHHHHhh
Confidence 99999999999999999999999988778999999999999988999999999999999999999986578899998765
Q ss_pred C
Q 040099 1235 T 1235 (1236)
Q Consensus 1235 ~ 1235 (1236)
.
T Consensus 246 ~ 246 (247)
T 2ff7_A 246 S 246 (247)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-52 Score=459.20 Aligned_cols=235 Identities=43% Similarity=0.748 Sum_probs=218.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||+|+|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 357999999999999999999999999999999999999999999999999998877777888999
Q ss_pred EEccCCCCCchhHHHHHhcC-CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 465 LVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g-~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
||+|++.+|+.|++|||.++ .+..+++++.++++.+++.+++.++|.|+++.+++++.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999998 45566788999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHh
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRL 622 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~ 622 (1236)
+||||||||+||+.+++.+.+.|+++.+++|+|++||+++.+..||+|++|++|++++.|++++++.. .+.|.+++..
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~ 237 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSE 237 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHh
Confidence 99999999999999999999999988778999999999999888999999999999999999999875 4667777653
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-50 Score=505.20 Aligned_cols=207 Identities=22% Similarity=0.358 Sum_probs=157.5
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHH-HhcccC-------C---------------
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISL-LQRFYD-------P--------------- 1065 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~l-L~r~~~-------~--------------- 1065 (1236)
..++++|+++. +|+||||+|++||++||+|+||||||||++. |.++.. |
T Consensus 501 ~~L~v~~l~~~--------~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTRN--------NLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEET--------TEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeeec--------ccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 35899999861 5999999999999999999999999999996 765531 2
Q ss_pred ---CCc-------EEEECCeecccCCh----------HHHhcceEEEcC-------------------------------
Q 040099 1066 ---SSG-------HITLDGVEIQKLQV----------KWLRQQMGVVSQ------------------------------- 1094 (1236)
Q Consensus 1066 ---~~G-------~I~idG~di~~i~~----------~~lR~~i~~V~Q------------------------------- 1094 (1236)
.+| .|.+||.++..-+. +.+|+.++.+|+
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 78999988864332 344443333222
Q ss_pred CCCCC-------------------------hhhHHHHHH----HH----------hhhchHHHhhhhchhh-hhcCCCCC
Q 040099 1095 EPVLF-------------------------SDTIRANIA----EM----------ANANGFISGLQEGYDT-LVGERGVQ 1134 (1236)
Q Consensus 1095 dp~LF-------------------------~gTIreNL~----~~----------a~~~~~i~~lp~Gldt-~vge~G~~ 1134 (1236)
|-.++ ..||.||+. +. ....+.+..+ |+.. .++.....
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~ 730 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIFRALDTLREV--GLGYLRLGQPATE 730 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHHHHHHHHHHT--TCTTSBTTCCGGG
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHHHHHHHHHHc--CCCcccccCCccc
Confidence 11111 126666652 11 1112222222 4443 35677889
Q ss_pred CChhHHHHHHHHHHHccC---CCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE-----
Q 040099 1135 LSGGQKQRVAIARAIVKE---PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV----- 1205 (1236)
Q Consensus 1135 LSGGQrQRlaLARALlr~---p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl----- 1205 (1236)
||||||||++|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|||+|+|+++.+..||+|++|
T Consensus 731 LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~L~p~~g 810 (842)
T 2vf7_A 731 LSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLDIGPGAG 810 (842)
T ss_dssp CCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSG
T ss_pred CCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEECCCCC
Confidence 999999999999999996 79999999999999999999999998874 588999999999999889999999
Q ss_pred -eCCEEEEecChhHHhhccCc
Q 040099 1206 -SQGMIVEKGSHESLISTKNG 1225 (1236)
Q Consensus 1206 -~~G~Ive~Gt~~eLl~~~~g 1225 (1236)
++|+|++.|+|+++++.+..
T Consensus 811 ~~~G~Iv~~g~~~el~~~~~~ 831 (842)
T 2vf7_A 811 EDGGRLVAQGTPAEVAQAAGS 831 (842)
T ss_dssp GGCCSEEEEECHHHHTTCTTC
T ss_pred CCCCEEEEEcCHHHHHhCchh
Confidence 69999999999999886443
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-50 Score=446.23 Aligned_cols=224 Identities=42% Similarity=0.747 Sum_probs=206.3
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|+++||+|+|+.....++|+|+||+|++||++||+||||||||||+++|.|+++| +|+|.+||.|+.+.+...+|++
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~~~~~~~ 94 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNRNSIRSI 94 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCHHHHHTT
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCHHHHhcc
Confidence 469999999999754224699999999999999999999999999999999999987 8999999999998888889999
Q ss_pred eEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|+||||+|.+|++|++||+. +.+++.+++..+|+|+||.+++.+.+||||||||++|||||+++|
T Consensus 95 i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p 174 (260)
T 2ghi_A 95 IGIVPQDTILFNETIKYNILYGKLDATDEEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGGERQRIAIARCLLKDP 174 (260)
T ss_dssp EEEECSSCCCCSEEHHHHHHTTCTTCCHHHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHHHHHHHHHHHHHHHCC
T ss_pred EEEEcCCCcccccCHHHHHhccCCCCCHHHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHHHHHHHHHHHHHHcCC
Confidence 99999999999999999984 223555667788999999999999999999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEP 1233 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~ 1233 (1236)
+|||||||||+||+.++..+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..
T Consensus 175 ~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~~~~~ 253 (260)
T 2ghi_A 175 KIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTISSAESIILLNKGKIVEKGTHKDLLKL-NGEYAEMWNM 253 (260)
T ss_dssp SEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGSTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHHHh
Confidence 999999999999999999999999998778999999999999988999999999999999999999986 7889888865
Q ss_pred c
Q 040099 1234 H 1234 (1236)
Q Consensus 1234 q 1234 (1236)
|
T Consensus 254 ~ 254 (260)
T 2ghi_A 254 Q 254 (260)
T ss_dssp H
T ss_pred h
Confidence 4
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-50 Score=447.07 Aligned_cols=226 Identities=45% Similarity=0.745 Sum_probs=206.2
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+++|++.+..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|+
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~ 93 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDHHYLHT 93 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHHHH
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCHHHHhc
Confidence 45799999999997522246999999999999999999999999999999999999999999999999999888888999
Q ss_pred ceEEEcCCCCCChhhHHHHHHH----------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1088 QMGVVSQEPVLFSDTIRANIAE----------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~gTIreNL~~----------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|+||||+|.+|+.|++|||.- ..++.+++..+|+|+++.+++.+.+||||||||++|||||++
T Consensus 94 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~~~~~~~~LSgGq~QRv~lAraL~~ 173 (271)
T 2ixe_A 94 QVAAVGQEPLLFGRSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTEVGETGNQLSGGQRQAVALARALIR 173 (271)
T ss_dssp HEEEECSSCCCCSSBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSBCCGGGTTSCHHHHHHHHHHHHHTT
T ss_pred cEEEEecCCccccccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhhhcCCcCCCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999951 124456778888899999999999999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+|+|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+..||+|++|++|+|++.|+++++++. .+.|.+
T Consensus 174 ~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~~~d~v~~l~~G~i~~~g~~~~l~~~-~~~~~~ 252 (271)
T 2ixe_A 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAERAHHILFLKEGSVCEQGTHLQLMER-GGCYRS 252 (271)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHTTCSEEEEEETTEEEEEECHHHHHHH-TSHHHH
T ss_pred CCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-cHHHHH
Confidence 9999999999999999999999999998754 7899999999999988999999999999999999999986 788999
Q ss_pred hhhcc
Q 040099 1230 LIEPH 1234 (1236)
Q Consensus 1230 L~~~q 1234 (1236)
+++.+
T Consensus 253 ~~~~~ 257 (271)
T 2ixe_A 253 MVEAL 257 (271)
T ss_dssp HHHC-
T ss_pred HHHHh
Confidence 88654
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-50 Score=506.11 Aligned_cols=199 Identities=29% Similarity=0.463 Sum_probs=150.3
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHH---------HHHhcccCCC------Cc------EEEECCeecccCCh----
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVI---------SLLQRFYDPS------SG------HITLDGVEIQKLQV---- 1082 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~---------~lL~r~~~~~------~G------~I~idG~di~~i~~---- 1082 (1236)
.|+||||+|++||++||+|+||||||||+ +++.+...+. +| .|.+|..++...+.
T Consensus 599 ~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~a 678 (916)
T 3pih_A 599 NLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNPA 678 (916)
T ss_dssp TCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCHH
T ss_pred cccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeecccccccccccccc
Confidence 69999999999999999999999999997 3444433332 23 35666655533211
Q ss_pred ------HHHh-------------------------------cceEEEcCCCCCCh-------------------------
Q 040099 1083 ------KWLR-------------------------------QQMGVVSQEPVLFS------------------------- 1100 (1236)
Q Consensus 1083 ------~~lR-------------------------------~~i~~V~Qdp~LF~------------------------- 1100 (1236)
+.+| +..|+++||..+++
T Consensus 679 t~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~g 758 (916)
T 3pih_A 679 TYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYKG 758 (916)
T ss_dssp HHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBTT
T ss_pred chhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhcc
Confidence 1111 23577777765543
Q ss_pred --------hhHHHHHHHH------hhhchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCC---CEEEEecCC
Q 040099 1101 --------DTIRANIAEM------ANANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEP---KILLLDEAT 1162 (1236)
Q Consensus 1101 --------gTIreNL~~~------a~~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p---~ILlLDEaT 1162 (1236)
.|++||+.-. ....+.+..+ |+. ..++..+.+||||||||++|||||+++| +||||||||
T Consensus 759 ~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~p~LLILDEPT 836 (916)
T 3pih_A 759 KNISDILDMTVDEALEFFKNIPSIKRTLQVLHDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTGRTLYILDEPT 836 (916)
T ss_dssp BCHHHHHSSBHHHHHHHTTTCHHHHHHHHHHHHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCSSEEEEEESTT
T ss_pred CCHHHHhhCCHHHHHHHHhcchhHHHHHHHHHHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCCCCEEEEECCC
Confidence 3667766411 1122222222 332 2467888999999999999999999876 799999999
Q ss_pred CCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChhHHhhccCcccHH
Q 040099 1163 SALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV------SQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl------~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
++||+.+.+.+++.|+++. +|+|||+|+|+++.++.||+|++| ++|+|++.|+|+++++.+ +.|..
T Consensus 837 sGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~syt~ 909 (916)
T 3pih_A 837 VGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-HSYTG 909 (916)
T ss_dssp TTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-TCHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-chHHH
Confidence 9999999999999999875 589999999999999999999999 899999999999999975 44543
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-49 Score=461.40 Aligned_cols=234 Identities=27% Similarity=0.466 Sum_probs=218.0
Q ss_pred CCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh
Q 040099 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR 460 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r 460 (1236)
..+.|+++||+|+|+.. +.++|+||||+|++||+++|+||||||||||+++|+|+++ ++|+|.++|+++.+.+...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34679999999999632 3579999999999999999999999999999999999998 999999999999999999999
Q ss_pred cceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 461 EKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
++||||+|++.+|+.||+||+.+.. ...+++++++++.+++.+++.+.|.+++|.++++|.+||||||||++|||||++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~-~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~ 172 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNA-AHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLS 172 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTC-CSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHT
T ss_pred CCEEEEcCCcccCccCHHHHhhhcc-ccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhc
Confidence 9999999999999999999998654 346788999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
+|++||||||||+||+.++..+++.|+++.+++|+|+|||+++.+..||||++|++|+|++.|+++|++.++...|.
T Consensus 173 ~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~v 249 (390)
T 3gd7_A 173 KAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFV 249 (390)
T ss_dssp TCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHH
Confidence 99999999999999999999999999988778999999999998888999999999999999999999987655554
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-50 Score=443.50 Aligned_cols=221 Identities=45% Similarity=0.759 Sum_probs=204.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|++ +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+...+|++|+
T Consensus 2 l~~~~l~~~y~~--~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~i~ 79 (243)
T 1mv5_A 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (243)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEEeCC--CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCHHHHHhhEE
Confidence 789999999952 246999999999999999999999999999999999999999999999999999888778899999
Q ss_pred EEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1091 VVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
||||+|.+|++|++|||. +.+++.+++..+|.|+++.+++.+.+||||||||++|||||+++|+
T Consensus 80 ~v~q~~~l~~~tv~enl~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~gl~~~~~~~~~~LSgGq~qrv~lAral~~~p~ 159 (243)
T 1mv5_A 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (243)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEcCCCccccccHHHHHhhhccCCCCHHHHHHHHHHhChHHHHHhCccchhchhccCcCcCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999983 2345566778888999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.+.+.|++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. .+.|.+++..+
T Consensus 160 lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~~~ 238 (243)
T 1mv5_A 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (243)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHHhCCEEEEEECCEEEEeCCHHHHHhc-cHHHHHHHHhh
Confidence 99999999999999999999999987778999999999999988999999999999999999999986 67788887654
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=423.00 Aligned_cols=221 Identities=25% Similarity=0.452 Sum_probs=198.2
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+|+|+.+ ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999632 35799999999999999999999999999999999999999999999998 5
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|++++|+.||+||+.++... ...+..++++.+++.+++..+|.++++.+++++.+||||||||++|||||+++|
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p 149 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSY-DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDA 149 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCC-CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEecCCcccCCCHHHHhhccCCc-ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCC
Confidence 9999999999999999999998542 345566777888999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHH-HHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhh
Q 040099 543 RILLLDEATSALDSESGRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~ 619 (1236)
++||||||||+||+.+++.+.+. ++++.+++|+|++||+++.+..||+|++|++|++++.|+++++.++ .+.|.++
T Consensus 150 ~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~ 226 (229)
T 2pze_A 150 DLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSK 226 (229)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHH
T ss_pred CEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHH
Confidence 99999999999999999999987 4555568999999999999888999999999999999999999865 3445443
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-48 Score=427.15 Aligned_cols=225 Identities=33% Similarity=0.576 Sum_probs=203.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+|+|+.. ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| +|
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999631 35799999999999999999999999999999999999999999999998 49
Q ss_pred EEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
+||+|+|++++.|++|||.++... ..++..++.+.+++.+++..+|.|++|.+++++.+||||||||++|||||+++|+
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~ 147 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQL-EEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCC-CTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEEcCCCcCCCcCHHHHhhCcccc-CHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999997642 3345667777888888888899999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHH---HHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 544 ILLLDEATSALDSESGRMVQEALD---RVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~---~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+||||||||+||+.++..+.+.|. ++.+++|+|+|||+++.+..||+|++|++|++++.|++++++.. .+.|.+++
T Consensus 148 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 226 (237)
T 2cbz_A 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFL 226 (237)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHH
T ss_pred EEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHH
Confidence 999999999999999999999984 44468999999999999888999999999999999999999876 67888887
Q ss_pred Hhhh
Q 040099 621 RLQE 624 (1236)
Q Consensus 621 ~~~~ 624 (1236)
..|.
T Consensus 227 ~~~~ 230 (237)
T 2cbz_A 227 RTYA 230 (237)
T ss_dssp HHTC
T ss_pred HHHH
Confidence 7654
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-48 Score=454.70 Aligned_cols=221 Identities=26% Similarity=0.467 Sum_probs=206.2
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHh
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR 1086 (1236)
..+.|+++||+++|+.. ..++|+||||+|++||+++|+||||||||||+++|.|+++ ++|+|.+||.|+.+++...+|
T Consensus 16 ~~~~i~~~~l~~~y~~~-~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~~~~r 93 (390)
T 3gd7_A 16 SGGQMTVKDLTAKYTEG-GNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITLEQWR 93 (390)
T ss_dssp SSCCEEEEEEEEESSSS-SCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCHHHHH
T ss_pred CCCeEEEEEEEEEecCC-CeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCChHHHh
Confidence 34689999999999643 3469999999999999999999999999999999999998 899999999999999999999
Q ss_pred cceEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++|+||||++.+|+.|++||+. +.+++.++..+.|.+++|.++++|.+||||||||+||||||+++
T Consensus 94 r~ig~v~Q~~~lf~~tv~enl~~~~~~~~~~v~~~l~~~~L~~~~~~~p~~l~~~i~~~g~~LSGGqrQRvalARAL~~~ 173 (390)
T 3gd7_A 94 KAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVADEVGLRSVIEQFPGKLDFVLVDGGCVLSHGHKQLMCLARSVLSK 173 (390)
T ss_dssp HTEEEESCCCCCCSEEHHHHHCTTCCSCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTTTTSCHHHHHHHHHHHHHHTT
T ss_pred CCEEEEcCCcccCccCHHHHhhhccccCHHHHHHHHHHhCCHHHHhhcccccccccccccccCCHHHHHHHHHHHHHhcC
Confidence 9999999999999999999983 45667778889999999999999999999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|+|||||||||+||+.++..+++.|++..+++|+|+|||+++.+..||||+||++|+|++.|+|+|+++++...|..
T Consensus 174 P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~va 250 (390)
T 3gd7_A 174 AKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAMLECDQFLVIEENKVRQYDSILELYHYPADRFVA 250 (390)
T ss_dssp CCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGGTTCSEEEEEETTEEEEESSHHHHHHCCSBHHHH
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCchHHH
Confidence 99999999999999999999999999887789999999999999889999999999999999999999987666654
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-48 Score=443.86 Aligned_cols=226 Identities=32% Similarity=0.502 Sum_probs=193.7
Q ss_pred CcEEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---
Q 040099 383 GDIELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW--- 458 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~--- 458 (1236)
.-|+++||+++|+.+. ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999996422 246999999999999999999999999999999999999999999999999999888654
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqR 531 (1236)
+|++||||||++.+|+. ||+||+.++.. ..+.+ ++.++++.+++. ........+||||||||
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~vgL~-----------~~~~~~~~~LSGGqkQR 171 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLG-----------DKHDSYPSNLSGGQKQR 171 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCG-----------GGTTCCTTTSCHHHHHH
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhcCChhhCCHHHHHH
Confidence 47889999999999876 99999998631 12332 344555555444 34455567999999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l 608 (1236)
++|||||+.+|++||||||||+||+.+...+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|+++|+++++
T Consensus 172 VaIArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev 251 (366)
T 3tui_C 172 VAIARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEV 251 (366)
T ss_dssp HHHHHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHH
T ss_pred HHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998853 8999999999999875 999999999999999999999
Q ss_pred cccccchhhhh
Q 040099 609 LENPYGAYNRL 619 (1236)
Q Consensus 609 ~~~~~~~y~~~ 619 (1236)
+.++...|.+.
T Consensus 252 ~~~p~~~~~~~ 262 (366)
T 3tui_C 252 FSHPKTPLAQK 262 (366)
T ss_dssp HSSCCSHHHHH
T ss_pred HhCCCcHHHHH
Confidence 98766666443
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-47 Score=426.51 Aligned_cols=215 Identities=27% Similarity=0.511 Sum_probs=185.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|++ ..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~--~~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSD--GTHALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTT--SCEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECC--CCeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 4899999999963 245999999999999999999999999999999999999999999999999984 333456788
Q ss_pred ceEEEccCC--CCCchhHHHHHhcCCC--CCCHHH----HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEP--VLLSSSIRDNIAYGKT--HATKEE----IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~--~l~~~ti~~ni~~g~~--~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+||||||+| .+|..||+||+.++.. ..+.++ +.++++.. |++......+.+||||||||++
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 153 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT-----------GIEHLKDKPTHCLSFGQKKRVA 153 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHHHHHHH
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhcCCcccCCHHHHHHHH
Confidence 999999997 5788899999998632 223333 34444444 4444455566789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++||||||||+||+.++..+.+.|+++. + |+|+|+|||+++.+.. ||+|++|++|+++++|++++++.
T Consensus 154 iAraL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~ 233 (275)
T 3gfo_A 154 IAGVLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFA 233 (275)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTH
T ss_pred HHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhc
Confidence 9999999999999999999999999999999999885 3 8999999999999865 99999999999999999999986
Q ss_pred c
Q 040099 611 N 611 (1236)
Q Consensus 611 ~ 611 (1236)
+
T Consensus 234 ~ 234 (275)
T 3gfo_A 234 E 234 (275)
T ss_dssp H
T ss_pred C
Confidence 5
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-47 Score=416.65 Aligned_cols=211 Identities=29% Similarity=0.512 Sum_probs=188.6
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| ++
T Consensus 3 ~l~~~~l~~~y~~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g-------------~i 68 (237)
T 2cbz_A 3 SITVRNATFTWARS-DPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG-------------SV 68 (237)
T ss_dssp CEEEEEEEEESCTT-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS-------------CE
T ss_pred eEEEEEEEEEeCCC-CCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC-------------EE
Confidence 38999999999632 24699999999999999999999999999999999999999999999999 49
Q ss_pred EEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1090 GVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+||||+|.+|+.|++|||. +..++.+.+..+|.|++|.+++.+.+||||||||++|||||+++|+|
T Consensus 69 ~~v~Q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~l 148 (237)
T 2cbz_A 69 AYVPQQAWIQNDSLRENILFGCQLEEPYYRSVIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNADI 148 (237)
T ss_dssp EEECSSCCCCSEEHHHHHHTTSCCCTTHHHHHHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHHHHHHHCCSE
T ss_pred EEEcCCCcCCCcCHHHHhhCccccCHHHHHHHHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHHHHHhcCCCE
Confidence 9999999999999999995 11222234455677888889999999999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHH---HHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhh
Q 040099 1156 LLLDEATSALDIESERVVQDALD---QVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~---~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1232 (1236)
||||||||+||+.++..+.+.|. +..+++|+|+|||+++.+..||+|++|++|++++.|+++++++. .+.|.+++.
T Consensus 149 llLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~~ 227 (237)
T 2cbz_A 149 YLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLPQVDVIIVMSGGKISEMGSYQELLAR-DGAFAEFLR 227 (237)
T ss_dssp EEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGGGSSEEEEEETTEEEEEECHHHHHHH-TSHHHHHHH
T ss_pred EEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHHhCCEEEEEeCCEEEEeCCHHHHhhc-cHHHHHHHH
Confidence 99999999999999999999984 34468999999999999988999999999999999999999986 788999987
Q ss_pred ccC
Q 040099 1233 PHT 1235 (1236)
Q Consensus 1233 ~q~ 1235 (1236)
.|-
T Consensus 228 ~~~ 230 (237)
T 2cbz_A 228 TYA 230 (237)
T ss_dssp HTC
T ss_pred HHH
Confidence 763
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-47 Score=418.38 Aligned_cols=214 Identities=31% Similarity=0.464 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCCC-CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----
Q 040099 385 IELKDVNFSYPARP-DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI---- 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~-~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~---- 459 (1236)
|+++||+|+|+++. +.++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|.++.+.+...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999996422 2469999999999999999999999999999999999999999999999999998887653
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCC-----CCCCHHH----HHHHHHHhccHHHHHhCCCCcccc-ccCCCCCCChHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGK-----THATKEE----IQAAAEAANASHFIKNLPQGLDTN-VGEHGIQLSGGQ 528 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~-----~~~~~~~----~~~~~~~~~~~~~i~~l~~g~~t~-~g~~g~~LSgGq 528 (1236)
|++||||+|++.+|+. ||+||+.++. .....++ +.++++.. |+... ....+.+|||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 150 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMA-----------ELEERFANHKPNQLSGGQ 150 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHT-----------TCCGGGTTCCGGGSCHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHC-----------CCChhhhhCChhhCCHHH
Confidence 4569999999999986 9999998742 1222222 33333333 33332 255677899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~ 606 (1236)
|||++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.++.||+|++|++|+|++.|+.+
T Consensus 151 ~QRv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~ 230 (235)
T 3tif_A 151 QQRVAIARALANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLR 230 (235)
T ss_dssp HHHHHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC
T ss_pred HHHHHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChh
Confidence 9999999999999999999999999999999999999998853 89999999999977779999999999999999877
Q ss_pred ccc
Q 040099 607 ELL 609 (1236)
Q Consensus 607 ~l~ 609 (1236)
++.
T Consensus 231 ~~~ 233 (235)
T 3tif_A 231 GFD 233 (235)
T ss_dssp ---
T ss_pred hhc
Confidence 653
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-46 Score=410.97 Aligned_cols=208 Identities=26% Similarity=0.458 Sum_probs=185.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|+++||+++|+.. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+|| +
T Consensus 5 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-------------~ 70 (229)
T 2pze_A 5 TEVVMENVTAFWEEG-GTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------R 70 (229)
T ss_dssp EEEEEEEEEECSSTT-SCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS-------------C
T ss_pred ceEEEEEEEEEeCCC-CceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC-------------E
Confidence 469999999999642 24699999999999999999999999999999999999999999999998 4
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+||||+|.+|++|++||+. +..++.+++..+|.+.++.+++++.+||||||||++|||||+++|+
T Consensus 71 i~~v~q~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAral~~~p~ 150 (229)
T 2pze_A 71 ISFCSQFSWIMPGTIKENIIFGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 150 (229)
T ss_dssp EEEECSSCCCCSBCHHHHHHTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEecCCcccCCCHHHHhhccCCcChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHHHHhcCCC
Confidence 99999999999999999985 1223445667788889999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1155 ILLLDEATSALDIESERVVQDAL-DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
+||||||||+||+.++..+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|++++++++ .+.|.+++
T Consensus 151 lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~-~~~~~~~~ 227 (229)
T 2pze_A 151 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-QPDFSSKL 227 (229)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHCSEEEEEETTEEEEEECHHHHHTC---CHHHHH
T ss_pred EEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHHhCCEEEEEECCEEEEECCHHHHHhc-ChHHHHHh
Confidence 99999999999999999999974 555568899999999999988999999999999999999999875 56676654
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-46 Score=467.44 Aligned_cols=203 Identities=25% Similarity=0.384 Sum_probs=153.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHh-cc----cC---CCCc-------------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RF----YD---PSSG------------- 1068 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~----~~---~~~G------------- 1068 (1236)
.+++++++. .+|+||||+|++||.+||+|+||||||||++.|+ +. +. +..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 2699999999999999999999999999999854 21 11 1233
Q ss_pred EEEECCeecccCC---hH-------HHh---------cceEEEcCCCCC-------------------------------
Q 040099 1069 HITLDGVEIQKLQ---VK-------WLR---------QQMGVVSQEPVL------------------------------- 1098 (1236)
Q Consensus 1069 ~I~idG~di~~i~---~~-------~lR---------~~i~~V~Qdp~L------------------------------- 1098 (1236)
.|.+||.++..-+ +. .+| +.++|+||...+
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4889988874321 11 122 345788885321
Q ss_pred ---------------C---------hhhHHHHHHHH------hhhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHH
Q 040099 1099 ---------------F---------SDTIRANIAEM------ANANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1099 ---------------F---------~gTIreNL~~~------a~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLAR 1147 (1236)
| ..|+.||+.-. ....+.+..+ |++. ..+....+||||||||++|||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~~~~~~~~~~L~~~--gL~~~~l~~~~~~LSGGekQRv~LAr 858 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASIPKIKRKLETLYDV--GLGYMKLGQPATTLSGGEAQRVKLAA 858 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSCHHHHHHHHHHHHT--TCSSSBTTCCGGGCCHHHHHHHHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcchhHHHHHHHHHHc--CCCcccccCchhhCCHHHHHHHHHHH
Confidence 1 11444444211 1112223322 4544 466778899999999999999
Q ss_pred HHccCC---CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEE------eCCEEEEecChh
Q 040099 1148 AIVKEP---KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVV------SQGMIVEKGSHE 1217 (1236)
Q Consensus 1148 ALlr~p---~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl------~~G~Ive~Gt~~ 1217 (1236)
||+++| +||||||||++||+.+.+.+.+.|+++. +|+|||+|+|+++.+..||+|++| ++|+|++.|+|+
T Consensus 859 aL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G~Iv~~g~~~ 938 (972)
T 2r6f_A 859 ELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGGQIVAVGTPE 938 (972)
T ss_dssp HHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCCSEEEEESHH
T ss_pred HHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCCEEEEecCHH
Confidence 999875 9999999999999999999999998864 578999999999999889999999 689999999999
Q ss_pred HHhhc
Q 040099 1218 SLIST 1222 (1236)
Q Consensus 1218 eLl~~ 1222 (1236)
++.+.
T Consensus 939 el~~~ 943 (972)
T 2r6f_A 939 EVAEV 943 (972)
T ss_dssp HHHTC
T ss_pred HHHhC
Confidence 99876
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-46 Score=411.63 Aligned_cols=219 Identities=28% Similarity=0.457 Sum_probs=187.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH-hcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI-REK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~-r~~ 462 (1236)
-|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999953 469999999999999999999999999999999999999999999999999988776554 556
Q ss_pred eEEEccCCCCCch-hHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||||+|++.+|.. |++||+.++. +....++..+.+ .+.++.++ |++...++.+.+||||||||++|||||+.
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~-----~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~ 156 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDL-----EWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHH-----HHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHH-----HHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHc
Confidence 9999999999987 9999999874 222222222222 23344443 35556677788999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||+|++|++|++++.|+++++.+.
T Consensus 157 ~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 5899999999998875 5999999999999999999988753
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-46 Score=426.48 Aligned_cols=219 Identities=30% Similarity=0.483 Sum_probs=189.4
Q ss_pred ccEEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---
Q 040099 1009 GEVQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW--- 1084 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~--- 1084 (1236)
.-|+++||+++|+... ..++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++...
T Consensus 23 ~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~~~ 102 (366)
T 3tui_C 23 HMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK 102 (366)
T ss_dssp CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHHHH
T ss_pred ceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHHHH
Confidence 3599999999997432 246999999999999999999999999999999999999999999999999999988655
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
+|++||||||+|.+|.. ||+||+.-.. .+.+.++.+ |++........+||||||||++|||||+.
T Consensus 103 ~r~~Ig~v~Q~~~l~~~~TV~env~~~~~~~~~~~~~~~~~v~~lL~~v--gL~~~~~~~~~~LSGGqkQRVaIArAL~~ 180 (366)
T 3tui_C 103 ARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALAS 180 (366)
T ss_dssp HHTTEEEECSSCCCCTTSCHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH--TCGGGTTCCTTTSCHHHHHHHHHHHHTTT
T ss_pred HhCcEEEEeCCCccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHhc
Confidence 47899999999999876 9999996211 112222222 55555667788999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+|+|||||||||+||+.+...|.+.|+++. .|+|+|+|||+++.+.. ||||+||++|+|++.|+++++++++...|.
T Consensus 181 ~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~~~ev~~~p~~~~~ 260 (366)
T 3tui_C 181 NPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 260 (366)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCBHHHHHSSCCSHHH
T ss_pred CCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCcHHH
Confidence 999999999999999999999999999875 38999999999999976 999999999999999999999987655553
Q ss_pred H
Q 040099 1229 S 1229 (1236)
Q Consensus 1229 ~ 1229 (1236)
+
T Consensus 261 ~ 261 (366)
T 3tui_C 261 Q 261 (366)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-46 Score=428.44 Aligned_cols=219 Identities=32% Similarity=0.524 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC--CCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE--FQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~--~~~~~~r~ 461 (1236)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ ......++
T Consensus 4 ~l~i~~ls~~y~---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQ---NTPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 489999999995 3579999999999999999999999999999999999999999999999999833 22234567
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCCC--CC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKTH--AT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI 534 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai 534 (1236)
+||||+|++.+|+. ||+|||.|+... .. .+++.++++..++.++ ......+||||||||++|
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~r~~~~LSGGq~QRVal 149 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELTGISEL-----------AGRYPHELSGGQQQRAAL 149 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHHTCGGG-----------TTSCGGGSCHHHHHHHHH
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHcCCchH-----------hcCChhhCCHHHHHHHHH
Confidence 89999999999975 999999998532 11 2345566666655444 444456899999999999
Q ss_pred HHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 535 ARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 535 ARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
||||+.+|++||||||||+||+.+...+++.|.++. .|.|+|+|||+++.+.. ||||++|++|+|++.|+++++..+
T Consensus 150 ArAL~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~ 229 (359)
T 3fvq_A 150 ARALAPDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQ 229 (359)
T ss_dssp HHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhC
Confidence 999999999999999999999999999998777663 48899999999999865 999999999999999999999887
Q ss_pred ccchh
Q 040099 612 PYGAY 616 (1236)
Q Consensus 612 ~~~~y 616 (1236)
+...+
T Consensus 230 p~~~~ 234 (359)
T 3fvq_A 230 PADLD 234 (359)
T ss_dssp CSCHH
T ss_pred cccHH
Confidence 54444
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-46 Score=412.86 Aligned_cols=215 Identities=33% Similarity=0.539 Sum_probs=184.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~---~~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFG---SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 499999999995 246999999999999999999999999999999999999999999999999985 334556788
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+||||+|++.+|+. ||+||+.++. ...+. +++.++++.. |++......+.+||||||||++
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~L~~~~~~~~~~LSgGqkQRv~ 169 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV-----------GLKDKAHAYPDSLSGGQAQRVA 169 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT-----------TCGGGTTSCGGGSCHHHHHHHH
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC-----------CCchHhcCChhhCCHHHHHHHH
Confidence 89999999998876 9999998852 11222 2334444444 4444455566789999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||+|++|++|++++.|++++++.+
T Consensus 170 lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 249 (263)
T 2olj_A 170 IARALAMEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDR 249 (263)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHS
T ss_pred HHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhC
Confidence 9999999999999999999999999999999999885 47899999999999875 999999999999999999998765
Q ss_pred c
Q 040099 612 P 612 (1236)
Q Consensus 612 ~ 612 (1236)
+
T Consensus 250 ~ 250 (263)
T 2olj_A 250 P 250 (263)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-46 Score=414.95 Aligned_cols=214 Identities=29% Similarity=0.440 Sum_probs=188.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+...+++.+
T Consensus 11 ~l~~~~l~~~~~---~~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQ---QQALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeC---CeeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 589999999995 35799999999999999999999999999999999999999999999999999999998899999
Q ss_pred EEEccCCCC-CchhHHHHHhcCCCCC----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYGKTHA----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g~~~~----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+|++|++.+ ++.||+||+.++.... ..+++.++++..++.+ .......+||||||||++|||||
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~~l~~-----------~~~~~~~~LSgGq~QRv~iAraL 156 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQTDCLA-----------LAQRDYRVLSGGEQQRVQLARVL 156 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHTTCST-----------TTTSBGGGCCHHHHHHHHHHHHH
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHcCChh-----------HhcCCcccCCHHHHHHHHHHHHH
Confidence 999999877 5679999999875322 2345556666555433 33344568999999999999999
Q ss_pred cC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 539 IK------DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 539 ~~------~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+. +|++||||||||+||+.++..+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|++++++
T Consensus 157 ~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~ 236 (266)
T 4g1u_C 157 AQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVL 236 (266)
T ss_dssp HHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHC
T ss_pred hcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHh
Confidence 99 9999999999999999999999999998853 4699999999999865 9999999999999999999987
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
..
T Consensus 237 ~~ 238 (266)
T 4g1u_C 237 NA 238 (266)
T ss_dssp CH
T ss_pred Cc
Confidence 64
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-46 Score=431.37 Aligned_cols=219 Identities=27% Similarity=0.457 Sum_probs=189.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~yg---~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 489999999995 35799999999999999999999999999999999999999999999999999887765 4679
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.||+. ||+|||.|+.. ..+. +++.++++..++.+ .......+||||||||++|||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~-----------~~~r~p~~LSGGqrQRVaiAr 146 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAH-----------LLDRKPKALSGGQRQRVAIGR 146 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHTTCGG-----------GTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCch-----------hhcCChhHCCHHHHHHHHHHH
Confidence 999999999975 99999998732 2233 33445555554443 444555689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++++...+.
T Consensus 147 AL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~ 226 (381)
T 3rlf_A 147 TLVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPA 226 (381)
T ss_dssp HHHHCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHHcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCc
Confidence 99999999999999999999999999999998853 8999999999998865 99999999999999999999988765
Q ss_pred chhhh
Q 040099 614 GAYNR 618 (1236)
Q Consensus 614 ~~y~~ 618 (1236)
..|..
T Consensus 227 ~~~v~ 231 (381)
T 3rlf_A 227 DRFVA 231 (381)
T ss_dssp BHHHH
T ss_pred cHHHH
Confidence 55543
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.9e-46 Score=413.89 Aligned_cols=209 Identities=27% Similarity=0.452 Sum_probs=182.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|++. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+. ..+...+|+
T Consensus 7 ~l~i~~ls~~y~~~--~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 84 (275)
T 3gfo_A 7 ILKVEELNYNYSDG--THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRKGIMKLRE 84 (275)
T ss_dssp EEEEEEEEEECTTS--CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHHHHHHHHH
T ss_pred EEEEEEEEEEECCC--CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccccHHHHhC
Confidence 48999999999753 35999999999999999999999999999999999999999999999999994 445567899
Q ss_pred ceEEEcCCC--CCChhhHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1088 QMGVVSQEP--VLFSDTIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1088 ~i~~V~Qdp--~LF~gTIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
+|+||||+| .+|..|++||+.-.. .+.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 85 ~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~iAraL~~~P 162 (275)
T 3gfo_A 85 SIGIVFQDPDNQLFSASVYQDVSFGAVNMKLPEDEIRKRVDNALKRT--GIEHLKDKPTHCLSFGQKKRVAIAGVLVMEP 162 (275)
T ss_dssp SEEEECSSGGGTCCSSBHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEEcCcccccccCcHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhcCCcccCCHHHHHHHHHHHHHHcCC
Confidence 999999998 578899999995211 111222222 4555556677889999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+.. ||||++|++|+|++.|++++++++
T Consensus 163 ~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~~~~~~~~ 234 (275)
T 3gfo_A 163 KVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGNPKEVFAE 234 (275)
T ss_dssp SEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEECHHHHTHH
T ss_pred CEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcC
Confidence 9999999999999999999999998875 38999999999999975 999999999999999999999875
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-46 Score=406.16 Aligned_cols=208 Identities=27% Similarity=0.397 Sum_probs=176.7
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL---- 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l---- 1085 (1236)
|+++||+++|+..+ ..++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+..++...+
T Consensus 2 l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 81 (235)
T 3tif_A 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (235)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHHh
Confidence 78999999997432 2469999999999999999999999999999999999999999999999999999887654
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHhh---------------hchHHHhhhhchhhhh-cCCCCCCChhHHHHHHHHHH
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMAN---------------ANGFISGLQEGYDTLV-GERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a~---------------~~~~i~~lp~Gldt~v-ge~G~~LSGGQrQRlaLARA 1148 (1236)
|++|+||||+|.+|.. |++||+.-... +.+.+.. -|++... .....+||||||||++||||
T Consensus 82 ~~~i~~v~Q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM--AELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hccEEEEecCCccCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHH--CCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 4579999999999987 99999952111 1111111 1343332 56678999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
|+.+|+|||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++..+.||+|++|++|+|++.|+.+++.
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~~~~~d~i~~l~~G~i~~~~~~~~~~ 233 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKLRGFD 233 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEECC---
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEcChhhhc
Confidence 9999999999999999999999999999998753 89999999999987779999999999999999988764
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-45 Score=404.48 Aligned_cols=209 Identities=24% Similarity=0.398 Sum_probs=184.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH-hcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL-RQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l-R~~ 1088 (1236)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.+.+...+ |++
T Consensus 6 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (240)
T 1ji0_A 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred eEEEEeEEEEECC---eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCHHHHHhCC
Confidence 3899999999964 359999999999999999999999999999999999999999999999999988876655 556
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh-----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA-----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a-----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
|+||||+|.+|.+ |++||+.-.. .+.++++.++ |++...+....+||||||||++|||||+++|+||
T Consensus 83 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~l~~~~-~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ll 161 (240)
T 1ji0_A 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFP-RLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLL 161 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCH-HHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEEecCCccCCCCcHHHHHHHhhhcCCCHHHHHHHHHHHHHHcc-cHhhHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 9999999999987 9999995211 1122333333 5767777888999999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1157 LLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 162 lLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 229 (240)
T 1ji0_A 162 MMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp EEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred EEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 9999999999999999999998875 5899999999998875 5999999999999999999999763
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-46 Score=412.98 Aligned_cols=216 Identities=30% Similarity=0.499 Sum_probs=184.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC----------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE---------- 453 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~---------- 453 (1236)
-|+++|++++|+ ++++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 6 ~l~i~~l~~~y~---~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 389999999995 2469999999999999999999999999999999999999999999999999862
Q ss_pred CCH---HHHhcceEEEccCCCCCch-hHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCC
Q 040099 454 FQL---KWIREKIGLVSQEPVLLSS-SIRDNIAYGK---THATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGI 522 (1236)
Q Consensus 454 ~~~---~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~ 522 (1236)
.+. ..+|++||||+|++.+|+. ||+||+.++. ..... +++.++++..++.+++ ......
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~----------~~~~~~ 152 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERA----------QGKYPV 152 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHH----------HTSCGG
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHcCCCchh----------hcCCcc
Confidence 443 3467789999999998876 9999998852 11222 3344555555554440 344456
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEE
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~ 600 (1236)
+||||||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|+++
T Consensus 153 ~LSgGq~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~ 232 (262)
T 1b0u_A 153 HLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIE 232 (262)
T ss_dssp GSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEE
T ss_pred cCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEE
Confidence 899999999999999999999999999999999999999999999885 47899999999999864 9999999999999
Q ss_pred EEeCcccccccc
Q 040099 601 EKGTHSELLENP 612 (1236)
Q Consensus 601 ~~g~~~~l~~~~ 612 (1236)
+.|++++++.++
T Consensus 233 ~~g~~~~~~~~~ 244 (262)
T 1b0u_A 233 EEGDPEQVFGNP 244 (262)
T ss_dssp EEECHHHHHHSC
T ss_pred EeCCHHHHHhCc
Confidence 999999998653
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-45 Score=401.33 Aligned_cols=207 Identities=28% Similarity=0.424 Sum_probs=177.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
-|+++|++|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999953 56999999999999999999999999999999999999999999999999998776543 34
Q ss_pred -cceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 461 -EKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 461 -~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++|+||+|++.+|.. |++||+.++.. .... +++.++++.. |++........+||||||||+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGq~qrv 149 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL-----------GLGDKLSRKPYELSGGEQQRV 149 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT-----------TCTTCTTCCGGGSCHHHHHHH
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc-----------CCchhhhCChhhCCHHHHHHH
Confidence 689999999998875 99999988531 1122 2233333333 444445566679999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
+|||||+.+|++||||||||+||+.++..+.+.|+++. +|+|+|++||+++.+..||+|++|++|+++++|+
T Consensus 150 ~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 150 AIARALANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp HHHHHTTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred HHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999999999999999885 4899999999999887799999999999999986
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-45 Score=421.88 Aligned_cols=217 Identities=29% Similarity=0.509 Sum_probs=187.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFG---KVKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999877653 5789
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+.... + ++++.++++..++.++. .....+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~r~~~~LSgGq~QRvalAr 146 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKLLIDNLL-----------DRKPTQLSGGQQQRVALAR 146 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHH
Confidence 999999999975 9999999975321 1 23455666666555444 3444689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~ 226 (359)
T 2yyz_A 147 ALVKQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPK 226 (359)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998753 889999999999885 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 227 ~~~ 229 (359)
T 2yyz_A 227 NMF 229 (359)
T ss_dssp BHH
T ss_pred cHH
Confidence 433
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-45 Score=407.56 Aligned_cols=214 Identities=22% Similarity=0.388 Sum_probs=183.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~ 462 (1236)
-|+++|++|+|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999952 469999999999999999999999999999999999999999999999999987664 345778
Q ss_pred eEEEccCCCCCc-hhHHHHHhcCCCC---------------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 463 IGLVSQEPVLLS-SSIRDNIAYGKTH---------------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 463 i~~v~Q~~~l~~-~ti~~ni~~g~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
||||+|++.+|. .||+||+.++... ...++.. ..+.+.++.+ |++......+.+|||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~--~l~~~~~~~~~~LSg 156 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMV-----EKAFKILEFL--KLSHLYDRKAGELSG 156 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHH-----HHHHHHHHHT--TCGGGTTSBGGGSCH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHH-----HHHHHHHHHc--CCchhhCCCchhCCH
Confidence 999999998886 4999999986421 1111111 1123344444 666666777789999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHh-hcCeEEEEECCEEEEEeC
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~ 604 (1236)
|||||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|++++.|+
T Consensus 157 GqkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~ 236 (257)
T 1g6h_A 157 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 236 (257)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999999999998854 799999999999986 599999999999999999
Q ss_pred ccc
Q 040099 605 HSE 607 (1236)
Q Consensus 605 ~~~ 607 (1236)
+++
T Consensus 237 ~~~ 239 (257)
T 1g6h_A 237 GEE 239 (257)
T ss_dssp SHH
T ss_pred HHH
Confidence 988
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=413.18 Aligned_cols=231 Identities=25% Similarity=0.427 Sum_probs=183.6
Q ss_pred HHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 357 KFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 357 ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
|+.++++.+++.... .......+.|+++||+|.| +++|+|+||+|++||++||+||||||||||+++|+|+
T Consensus 17 ~~~~~~~~~~~~~~~----~~~~~~~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl 87 (290)
T 2bbs_A 17 GFGELFEKAKQNNNN----RKTSNGDDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGE 87 (290)
T ss_dssp HHHHHHHHCC---------------------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTS
T ss_pred HHHHHhccccccccc----ccccCCCceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcC
Confidence 667777655432211 1111223569999999964 3599999999999999999999999999999999999
Q ss_pred CCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 437 YDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 437 ~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
++|++|+|.++| +|+||+|++.+|++|++|||. +.. .....+.++++..++.+++..+|.++++.
T Consensus 88 ~~p~~G~I~~~g-------------~i~~v~Q~~~l~~~tv~enl~-~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~~~~ 152 (290)
T 2bbs_A 88 LEPSEGKIKHSG-------------RISFCSQNSWIMPGTIKENII-GVS-YDEYRYRSVIKACQLEEDISKFAEKDNIV 152 (290)
T ss_dssp SCEEEEEEECCS-------------CEEEECSSCCCCSSBHHHHHH-TTC-CCHHHHHHHHHHTTCHHHHHTSTTGGGCB
T ss_pred CCCCCcEEEECC-------------EEEEEeCCCccCcccHHHHhh-Ccc-cchHHHHHHHHHhChHHHHHhccccccch
Confidence 999999999998 599999999999999999998 543 23455666778889999999999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHccCceEEEEecCchhHhhcCeEEEEE
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEAL-DRVMINRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l-~~~~~~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
+++++.+||||||||++|||||+++|++||||||||+||+.++..+.+.+ +++.+++|+|+|||+++.+..||+|++|+
T Consensus 153 ~~~~~~~LSgGq~QRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~ 232 (290)
T 2bbs_A 153 LGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILH 232 (290)
T ss_dssp C----CCCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEE
T ss_pred hcCccCcCCHHHHHHHHHHHHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEE
Confidence 99999999999999999999999999999999999999999999999864 45556899999999999988899999999
Q ss_pred CCEEEEEeCccccccc
Q 040099 596 QGKIVEKGTHSELLEN 611 (1236)
Q Consensus 596 ~G~i~~~g~~~~l~~~ 611 (1236)
+|++++.|++++++..
T Consensus 233 ~G~i~~~g~~~~l~~~ 248 (290)
T 2bbs_A 233 EGSSYFYGTFSELQNL 248 (290)
T ss_dssp TTEEEEEECHHHHHHH
T ss_pred CCeEEEeCCHHHHhhh
Confidence 9999999999998753
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-45 Score=406.49 Aligned_cols=213 Identities=29% Similarity=0.444 Sum_probs=184.8
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++||+++|+ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ....+|++
T Consensus 14 ~~l~i~~l~~~y~---~~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~~ 89 (256)
T 1vpl_A 14 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 89 (256)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CeEEEEEEEEEEC---CEEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhhc
Confidence 4699999999995 3579999999999999999999999999999999999999999999999999876 45667889
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||||+|++.+|.. |++||+.++.. .... +++.++++..++. ......+.+||||||||++||
T Consensus 90 i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~gL~-----------~~~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 90 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLG-----------EKIKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCG-----------GGGGSBGGGCCHHHHHHHHHH
T ss_pred EEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCc-----------hHhcCChhhCCHHHHHHHHHH
Confidence 9999999998876 99999987521 1222 2344555555443 334455668999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||+.+|++||||||||+||+.+...+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|+++++.+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 235 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 235 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHH
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHH
Confidence 99999999999999999999999999999999885 47899999999999876 99999999999999999998864
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-45 Score=423.37 Aligned_cols=217 Identities=35% Similarity=0.513 Sum_probs=186.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFG---NFTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESS---SSEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEEC---CEEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 389999999995 34699999999999999999999999999999999999999999999999999877653 5689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+.. .... +++.++++..++. ........+||||||||++|||
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~-----------~~~~r~~~~LSGGq~QRvalAr 146 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKMLHID-----------KLLNRYPWQLSGGQQQRVAIAR 146 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCT-----------TCTTCCGGGSCHHHHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCCc-----------hHhhCChhhCCHHHHHHHHHHH
Confidence 999999999975 99999998631 1222 2344555555443 3344555689999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 147 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~ 226 (362)
T 2it1_A 147 ALVKEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPK 226 (362)
T ss_dssp HHTTCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCS
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcc
Confidence 99999999999999999999999999999998853 899999999999875 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 227 ~~~ 229 (362)
T 2it1_A 227 YKF 229 (362)
T ss_dssp BHH
T ss_pred chH
Confidence 333
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-45 Score=420.88 Aligned_cols=219 Identities=30% Similarity=0.502 Sum_probs=187.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+++|++++|++ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2469999999999999999999999999999999999999999999999999977654 3678
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
||||+|++.+|+. ||+|||.|+.. ..+. +++.++++..++.++ ......+||||||||++||
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~-----------~~r~~~~LSGGq~QRvalA 157 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFMRLESY-----------ANRFPHELSGGQQQRVALA 157 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTCGGG-----------TTSCGGGSCHHHHHHHHHH
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCChhH-----------hcCCcccCCHHHHHHHHHH
Confidence 9999999999975 99999998632 1222 345555555555444 3444568999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
|||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+.. ||+|++|++|+|++.|+++++..++
T Consensus 158 rAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p 237 (355)
T 1z47_A 158 RALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKP 237 (355)
T ss_dssp HHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred HHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCc
Confidence 999999999999999999999999999999998853 8999999999998865 9999999999999999999998765
Q ss_pred cchh
Q 040099 613 YGAY 616 (1236)
Q Consensus 613 ~~~y 616 (1236)
...|
T Consensus 238 ~~~~ 241 (355)
T 1z47_A 238 GTLF 241 (355)
T ss_dssp SSHH
T ss_pred cchH
Confidence 4333
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.4e-45 Score=420.92 Aligned_cols=217 Identities=27% Similarity=0.455 Sum_probs=182.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+.. +++|
T Consensus 11 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 499999999995 24699999999999999999999999999999999999999999999999999877653 5689
Q ss_pred EEEccCCCCCch-hHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
|||+|++.+|+. ||+|||.|+... .+. +++.++++..++.++ ......+||||||||++|||
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~QRvalAr 154 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELLQIEEL-----------LNRYPAQLSGGQRQRVAVAR 154 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHTTCGGG-----------TTSCTTTCCSSCHHHHHHHH
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHH
Confidence 999999999875 999999998532 233 234555555554443 44555699999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccccccc
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPY 613 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~ 613 (1236)
||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++++.++.
T Consensus 155 AL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~ 234 (372)
T 1v43_A 155 AIVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPN 234 (372)
T ss_dssp HHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCS
T ss_pred HHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcc
Confidence 99999999999999999999999999999998853 789999999999885 599999999999999999999987654
Q ss_pred chh
Q 040099 614 GAY 616 (1236)
Q Consensus 614 ~~y 616 (1236)
..|
T Consensus 235 ~~~ 237 (372)
T 1v43_A 235 SVF 237 (372)
T ss_dssp BHH
T ss_pred cHH
Confidence 443
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-45 Score=406.66 Aligned_cols=213 Identities=31% Similarity=0.542 Sum_probs=185.8
Q ss_pred EEEEeEEEECCCCCC--CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 385 IELKDVNFSYPARPD--EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~--~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
|+++|++|+|+.+.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 4699999999999999999999999999999999999999999999999998642 66788
Q ss_pred eEEEccCC--CCCchhHHHHHhcCCCC-----CCHHHHHHHHHHhccH--HHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 463 IGLVSQEP--VLLSSSIRDNIAYGKTH-----ATKEEIQAAAEAANAS--HFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 463 i~~v~Q~~--~l~~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~--~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
||||+|+| .+++.|++||+.++... ...+++.++++..++. ++..+.| .+||||||||++
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~-----------~~LSgGq~qRv~ 148 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFVGLDFDSFKDRVP-----------FFLSGGEKRRVA 148 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHTTCCHHHHTTCCG-----------GGSCHHHHHHHH
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHcCcCCcccccCCh-----------hhCCHHHHHHHH
Confidence 99999996 46778999999987421 1245677778877776 5554443 589999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
|||||+.+|++||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+.. ||++++|++|++++.|++++++.+
T Consensus 149 lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 149 IASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred HHHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999999999999885 48999999999999875 999999999999999999998764
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=401.63 Aligned_cols=210 Identities=32% Similarity=0.492 Sum_probs=182.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+. ..+...+|+
T Consensus 24 ~l~i~~l~~~y~~---~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~~ 100 (263)
T 2olj_A 24 MIDVHQLKKSFGS---LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNLNKVRE 100 (263)
T ss_dssp SEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESSSTTCCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECCCccccHHHHhC
Confidence 4999999999964 35999999999999999999999999999999999999999999999999985 334567788
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHh----h---------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMA----N---------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a----~---------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
+|+||||++.+|.. |++||+.-.. + +.+.++.+ |++........+||||||||++|||||+.+|
T Consensus 101 ~i~~v~Q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~LSgGqkQRv~lAraL~~~p 178 (263)
T 2olj_A 101 EVGMVFQRFNLFPHMTVLNNITLAPMKVRKWPREKAEAKAMELLDKV--GLKDKAHAYPDSLSGGQAQRVAIARALAMEP 178 (263)
T ss_dssp HEEEECSSCCCCTTSCHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred cEEEEeCCCcCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHCCC
Confidence 99999999999987 9999995311 1 11122222 4555556677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccC
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKN 1224 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~ 1224 (1236)
++||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++.
T Consensus 179 ~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~ 251 (263)
T 2olj_A 179 KIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEGKPEDLFDRPQ 251 (263)
T ss_dssp SEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCC
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcc
Confidence 9999999999999999999999998874 47899999999999875 99999999999999999999987643
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-45 Score=417.96 Aligned_cols=215 Identities=29% Similarity=0.528 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++++|+ ++ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+. .+++||
T Consensus 2 l~~~~l~~~y~---~~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWK---NF-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECS---SC-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEEC---CE-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 78999999995 24 9999999999999999999999999999999999999999999999999987554 367899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||+|++.+|+. ||+|||.|+.. ....+++.++++..++.++. .....+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSgGq~QRvalAraL~~ 144 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLL-----------DRNPLTLSGGEQQRVALARALVT 144 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTT-----------TSCGGGSCHHHHHHHHHHHHTTS
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHHHHHHHHHc
Confidence 99999999976 99999998631 11225666666666554443 34456899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccccchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+. .||+|++|++|+|++.|+++++..++...|
T Consensus 145 ~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~ 223 (348)
T 3d31_A 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (348)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHH
Confidence 9999999999999999999999999998853 789999999999875 599999999999999999999987654333
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-45 Score=411.11 Aligned_cols=214 Identities=25% Similarity=0.380 Sum_probs=183.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC--CCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK--EFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~--~~~~~~~r~ 461 (1236)
-|+++||+|+|++ +++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999953 46999999999999999999999999999999999999999999999999987 677777888
Q ss_pred ceEEEccCCCC-Cch--hHHHHHhcCCCC-------CCH---HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 462 KIGLVSQEPVL-LSS--SIRDNIAYGKTH-------ATK---EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 462 ~i~~v~Q~~~l-~~~--ti~~ni~~g~~~-------~~~---~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
+||||+|++.+ |.. ||+||+.++... ..+ +++.++++.. |++........+|||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~LSgGq 166 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV-----------GMSAKAQQYIGYLSTGE 166 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT-----------TCGGGTTSBGGGSCHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc-----------CChhHhcCChhhCCHHH
Confidence 99999999864 544 999999987421 122 2233333333 44445556667899999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceE--EEEecCchhHh-hcCeEEEEECCEEEEEeC
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTT--VIVSHRLSLIR-NANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~--i~itH~~~~~~-~ad~i~vl~~G~i~~~g~ 604 (1236)
|||++|||||+.+|++||||||||+||+.+++.+.+.|+++.+ |+|+ |+|||+++.+. .||+|++|++|++++.|+
T Consensus 167 kqRv~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~ 246 (279)
T 2ihy_A 167 KQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGA 246 (279)
T ss_dssp HHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998854 8899 99999999985 599999999999999999
Q ss_pred ccccccc
Q 040099 605 HSELLEN 611 (1236)
Q Consensus 605 ~~~l~~~ 611 (1236)
++++...
T Consensus 247 ~~~~~~~ 253 (279)
T 2ihy_A 247 VEDILTS 253 (279)
T ss_dssp HHHHCSH
T ss_pred HHHHhcc
Confidence 9998753
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=5.4e-45 Score=400.07 Aligned_cols=209 Identities=32% Similarity=0.466 Sum_probs=179.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|++|+|+ + +|+|+||++++ |++||+||||||||||+++|+|+++|++|+|.++|+++.+.+ ..|++||
T Consensus 2 l~~~~l~~~y~---~--~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLG---N--FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEET---T--EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeC---C--EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 68999999994 1 59999999999 999999999999999999999999999999999999987543 3467899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
||+|++.+|+. |++||+.++..... .+++.++++.. |++........+||||||||++|||||+
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL-----------GIAHLLDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT-----------TCTTTTTCCGGGSCHHHHHHHHHHHHHT
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 99999999876 99999999754222 12233333333 4444445556789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLENP 612 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~~~ 612 (1236)
++|++||||||||+||+.+++.+.+.|+++.+ |+|+|++||+++.+. .||+|++|++|++++.|++++++.++
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999999999999998853 899999999999875 49999999999999999999987653
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.8e-45 Score=421.15 Aligned_cols=218 Identities=31% Similarity=0.452 Sum_probs=186.2
Q ss_pred EEEEeEEEECCCCCCCc--cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---HHHH
Q 040099 385 IELKDVNFSYPARPDEQ--ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWI 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~--~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~ 459 (1236)
|+++|++++|+ +.+ +|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+ ....
T Consensus 4 l~i~~l~~~y~---~~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~~ 80 (353)
T 1oxx_K 4 IIVKNVSKVFK---KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPE 80 (353)
T ss_dssp EEEEEEEEEEG---GGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGG
T ss_pred EEEEeEEEEEC---CEeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCChh
Confidence 89999999995 246 999999999999999999999999999999999999999999999999986521 2234
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCCC--CCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKTH--ATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~--~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+++||||+|++.+|+. ||+|||.|+... .+. +++.++++..++.++. .....+||||||||+
T Consensus 81 ~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~~-----------~~~~~~LSGGq~QRv 149 (353)
T 1oxx_K 81 DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQRV 149 (353)
T ss_dssp GSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHH
T ss_pred hCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchHh-----------cCChhhCCHHHHHHH
Confidence 6789999999999976 999999997532 222 3455555555554443 444568999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++||||||||+||+.++..+.+.|+++.+ |+|+|+|||+++.+.. ||+|++|++|+|++.|++++++
T Consensus 150 alAraL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~ 229 (353)
T 1oxx_K 150 ALARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLY 229 (353)
T ss_dssp HHHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998853 7999999999998865 9999999999999999999998
Q ss_pred ccccchh
Q 040099 610 ENPYGAY 616 (1236)
Q Consensus 610 ~~~~~~y 616 (1236)
.++...|
T Consensus 230 ~~p~~~~ 236 (353)
T 1oxx_K 230 DNPVSIQ 236 (353)
T ss_dssp HSCSSHH
T ss_pred hCcccHH
Confidence 7654333
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-44 Score=403.08 Aligned_cols=208 Identities=28% Similarity=0.399 Sum_probs=181.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-++++||+++|.+ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+...+|+.+
T Consensus 11 ~l~~~~l~~~~~~---~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~i 87 (266)
T 4g1u_C 11 LLEASHLHYHVQQ---QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQPKALARTR 87 (266)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCHHHHHHHE
T ss_pred eEEEEeEEEEeCC---eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCHHHHhheE
Confidence 5899999999974 3599999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCC-ChhhHHHHHHHHh----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc------C
Q 040099 1090 GVVSQEPVL-FSDTIRANIAEMA----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK------E 1152 (1236)
Q Consensus 1090 ~~V~Qdp~L-F~gTIreNL~~~a----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr------~ 1152 (1236)
++++|++.+ |..|++||+.-.. .+.+.++.+ |+.........+||||||||++|||||++ +
T Consensus 88 ~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~QRv~iAraL~~~~~~~~~ 165 (266)
T 4g1u_C 88 AVMRQYSELAFPFSVSEVIQMGRAPYGGSQDRQALQQVMAQT--DCLALAQRDYRVLSGGEQQRVQLARVLAQLWQPQPT 165 (266)
T ss_dssp EEECSCCCCCSCCBHHHHHHGGGTTSCSTTHHHHHHHHHHHT--TCSTTTTSBGGGCCHHHHHHHHHHHHHHHTCCSSCC
T ss_pred EEEecCCccCCCCCHHHHHHhhhhhcCcHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHhcccccCCC
Confidence 999999976 6779999995211 112222222 34334445567899999999999999999 9
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|++||||||||+||+.+...+.+.|+++.+ ++|+|+|||+++.+.. ||||++|++|++++.|++++++..
T Consensus 166 p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~~~~~~~~ 238 (266)
T 4g1u_C 166 PRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGTPEEVLNA 238 (266)
T ss_dssp CEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHCCH
T ss_pred CCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcCHHHHhCc
Confidence 999999999999999999999999998753 4699999999999875 999999999999999999999764
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-44 Score=396.97 Aligned_cols=209 Identities=26% Similarity=0.407 Sum_probs=182.8
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+++|.+ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++.. ....+|+
T Consensus 13 ~~~l~i~~l~~~y~~---~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~-~~~~~~~ 88 (256)
T 1vpl_A 13 MGAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRK 88 (256)
T ss_dssp -CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHT
T ss_pred CCeEEEEEEEEEECC---EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCc-cHHHHhh
Confidence 357999999999963 359999999999999999999999999999999999999999999999999976 4567889
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+||||+|.+|.+ |++||+.-... +.+.++.+ |++........+||||||||++|||||+++|+
T Consensus 89 ~i~~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--gL~~~~~~~~~~LSgGq~qRv~lAraL~~~p~ 166 (256)
T 1vpl_A 89 LISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIA--GLGEKIKDRVSTYSKGMVRKLLIARALMVNPR 166 (256)
T ss_dssp TEEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCS
T ss_pred cEEEEcCCCCCCCCCcHHHHHHHHHHHcCCChHHHHHHHHHHHHHC--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 99999999999887 99999952111 11222221 55555566778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|++|++|++++.|+++++.+.
T Consensus 167 lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 236 (256)
T 1vpl_A 167 LAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 236 (256)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred EEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEecCHHHHHHh
Confidence 999999999999999999999999875 57899999999999976 999999999999999999999763
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-44 Score=413.34 Aligned_cols=215 Identities=31% Similarity=0.494 Sum_probs=183.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc--CChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK--LQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~--i~~~~lR~ 1087 (1236)
.|+++||+++|.+ .++|+||||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+ .+....|+
T Consensus 4 ~l~i~~ls~~y~~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~~~~~~r 80 (359)
T 3fvq_A 4 ALHIGHLSKSFQN---TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTNLPVRER 80 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCBCCGGGS
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccccchhhC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999933 22334578
Q ss_pred ceEEEcCCCCCChh-hHHHHHHH------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAE------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|++.+|.. |++||+.- ...+.+.++.+ |++........+||||||||+||||||+.+|+
T Consensus 81 ~ig~vfQ~~~l~p~ltV~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRValArAL~~~P~ 158 (359)
T 3fvq_A 81 RLGYLVQEGVLFPHLTVYRNIAYGLGNGKGRTAQERQRIEAMLELT--GISELAGRYPHELSGGQQQRAALARALAPDPE 158 (359)
T ss_dssp CCEEECTTCCCCTTSCHHHHHHTTSTTSSCCSHHHHHHHHHHHHHH--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred CEEEEeCCCcCCCCCCHHHHHHHHHHHcCCChHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 89999999999975 99999951 11122222222 55555667778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+||||||||+||+.+...+++.|++.. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|+++++++...|..
T Consensus 159 lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~el~~~p~~~~~a 236 (359)
T 3fvq_A 159 LILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTASPHELYRQPADLDAA 236 (359)
T ss_dssp EEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSCHHHH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeCHHHHHhCcccHHHH
Confidence 999999999999999999998776653 47899999999999865 9999999999999999999999876655544
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-44 Score=420.54 Aligned_cols=217 Identities=26% Similarity=0.451 Sum_probs=185.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC------CCHH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE------FQLK 457 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~------~~~~ 457 (1236)
.|+++|++++|+ +.++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+ .+.
T Consensus 3 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~- 78 (372)
T 1g29_1 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPP- 78 (372)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCG-
T ss_pred EEEEEeEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCH-
Confidence 389999999995 3469999999999999999999999999999999999999999999999999865 443
Q ss_pred HHhcceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHH
Q 040099 458 WIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkq 530 (1236)
.+++||||+|++.+|+. ||+|||.|+.. .... +++.++++..++.++ ......+|||||||
T Consensus 79 -~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~L~~~-----------~~r~~~~LSGGq~Q 146 (372)
T 1g29_1 79 -KDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTEL-----------LNRKPRELSGGQRQ 146 (372)
T ss_dssp -GGSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGG-----------TTCCGGGSCHHHHH
T ss_pred -hHCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHCCCchH-----------hcCCcccCCHHHHH
Confidence 35789999999999864 99999998632 1222 345555555555444 34445689999999
Q ss_pred HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccc
Q 040099 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 531 RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
|++|||||+.+|++||||||||+||+.++..+.+.|+++.+ |.|+|+|||+++.+. .||+|++|++|+|++.|++++
T Consensus 147 RvalArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~ 226 (372)
T 1g29_1 147 RVALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDE 226 (372)
T ss_dssp HHHHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHH
T ss_pred HHHHHHHHhcCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHH
Confidence 99999999999999999999999999999999999998853 889999999999886 499999999999999999999
Q ss_pred ccccccchh
Q 040099 608 LLENPYGAY 616 (1236)
Q Consensus 608 l~~~~~~~y 616 (1236)
++.++...|
T Consensus 227 l~~~p~~~~ 235 (372)
T 1g29_1 227 VYDKPANTF 235 (372)
T ss_dssp HHHSCSBHH
T ss_pred HHhCcccHH
Confidence 987654333
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-44 Score=414.91 Aligned_cols=213 Identities=27% Similarity=0.397 Sum_probs=186.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|+. ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+.. +++|
T Consensus 3 ~l~~~~l~~~yg~---~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~~--~r~i 77 (381)
T 3rlf_A 3 SVQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGV 77 (381)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCGG--GSCE
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCHH--HCCE
Confidence 4899999999964 3699999999999999999999999999999999999999999999999999988765 4789
Q ss_pred EEEcCCCCCChh-hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||+|++.||+. ||+|||.-- ..+.+.++.+ |++........+||||||||++|||||+++|+||
T Consensus 78 g~VfQ~~~l~p~ltV~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~p~~LSGGqrQRVaiArAL~~~P~lL 155 (381)
T 3rlf_A 78 GMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVF 155 (381)
T ss_dssp EEECTTCCCCTTSCHHHHHTHHHHHTTCCHHHHHHHHHHHHHHT--TCGGGTTCCGGGSCHHHHHHHHHHHHHHHCCSEE
T ss_pred EEEecCCcCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhcCChhHCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 999999511 1112222222 4555566777899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+++.+++...|..
T Consensus 156 LLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g~~~~l~~~p~~~~v~ 231 (381)
T 3rlf_A 156 LLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFVA 231 (381)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred EEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCccHHHH
Confidence 99999999999999999999988753 7899999999999865 9999999999999999999999876666654
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-44 Score=396.55 Aligned_cols=207 Identities=25% Similarity=0.343 Sum_probs=184.9
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+|+ ++|+|+||+|++||+++|+||||||||||+++|+|+++|+ |+|.++|+++.+.+...+|++|+
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 899999986 4899999999999999999999999999999999999999 99999999998888888889999
Q ss_pred EEccCCCCCch-hHHHHHhcCCC-CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
||+|++.+|.. |++||+.++.. ..+.+++.++++..++.++ ....+.+||||||||++|||||+++|
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~~l~~~-----------~~~~~~~LSgGq~qrv~lAraL~~~p 145 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDK-----------LGRSTNQLSGGEWQRVRLAAVVLQIT 145 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHTTCGGG-----------TTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHcCChhH-----------hcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999998875 99999999742 2235566677766655443 34456689999999999999999999
Q ss_pred C-------EEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHh-hcCeEEEEECCEEEEEeCcccccc
Q 040099 543 R-------ILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 543 ~-------ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
+ +||||||||+||+.+++.+.+.|+++. +|+|+|++||+++.+. .||++++|++|++++.|+++++..
T Consensus 146 ~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 146 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp TTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred CcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 9 999999999999999999999999885 4889999999999985 599999999999999999999875
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-44 Score=398.61 Aligned_cols=210 Identities=33% Similarity=0.516 Sum_probs=181.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK---------- 1079 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~---------- 1079 (1236)
-|+++||+++|.. .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.++|.++..
T Consensus 6 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 82 (262)
T 1b0u_A 6 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 82 (262)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEeeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEccccccccccccc
Confidence 4899999999964 359999999999999999999999999999999999999999999999999862
Q ss_pred CCh---HHHhcceEEEcCCCCCChh-hHHHHHHHHh----h---------hchHHHhhhhchhhh-hcCCCCCCChhHHH
Q 040099 1080 LQV---KWLRQQMGVVSQEPVLFSD-TIRANIAEMA----N---------ANGFISGLQEGYDTL-VGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1080 i~~---~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a----~---------~~~~i~~lp~Gldt~-vge~G~~LSGGQrQ 1141 (1236)
++. ..+|++++||||++.+|.. |++||+.-.. + +.+.++.+ |++.. ......+|||||||
T Consensus 83 ~~~~~~~~~~~~i~~v~Q~~~l~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~~l~~~--~L~~~~~~~~~~~LSgGq~q 160 (262)
T 1b0u_A 83 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQ 160 (262)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHH
T ss_pred cChhhHHHHhcceEEEecCcccCCCCcHHHHHHhhHHHhcCCCHHHHHHHHHHHHHHc--CCCchhhcCCcccCCHHHHH
Confidence 443 3568899999999999877 9999995311 1 11122222 45555 56777899999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++
T Consensus 161 Rv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~ 240 (262)
T 1b0u_A 161 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 240 (262)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHH
Confidence 9999999999999999999999999999999999998874 47899999999999864 999999999999999999999
Q ss_pred hhccC
Q 040099 1220 ISTKN 1224 (1236)
Q Consensus 1220 l~~~~ 1224 (1236)
++.+.
T Consensus 241 ~~~~~ 245 (262)
T 1b0u_A 241 FGNPQ 245 (262)
T ss_dssp HHSCC
T ss_pred HhCcc
Confidence 87533
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=7e-44 Score=388.24 Aligned_cols=201 Identities=28% Similarity=0.417 Sum_probs=173.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
-|+++|++++|++ .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+... +|
T Consensus 4 ~l~~~~l~~~y~~---~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 4 ILRAENIKKVIRG---YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred EEEEEeEEEEECC---EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 3899999999964 35999999999999999999999999999999999999999999999999998877543 44
Q ss_pred -cceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1087 -QQMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1087 -~~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
++|+||||+|.+|.. |++||+.-... +.+.++.+ |++........+||||||||++|||||+.+
T Consensus 81 ~~~i~~v~q~~~l~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~laral~~~ 158 (224)
T 2pcj_A 81 NRKLGFVFQFHYLIPELTALENVIVPMLKMGKPKKEAKERGEYLLSEL--GLGDKLSRKPYELSGGEQQRVAIARALANE 158 (224)
T ss_dssp HHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHTTTC
T ss_pred hCcEEEEecCcccCCCCCHHHHHHhHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHHHHHHcC
Confidence 789999999998875 99999952111 11122221 444445566778999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecC
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt 1215 (1236)
|++||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+..||+|++|++|++++.|+
T Consensus 159 p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~d~v~~l~~G~i~~~g~ 222 (224)
T 2pcj_A 159 PILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELAELTHRTLEMKDGKVVGEIT 222 (224)
T ss_dssp CSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHTTSSEEEEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhCCEEEEEECCEEEEEee
Confidence 99999999999999999999999998874 4789999999999987799999999999999986
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.7e-44 Score=396.26 Aligned_cols=204 Identities=20% Similarity=0.324 Sum_probs=178.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQ 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~ 1088 (1236)
-|+++||+++|++ .++|+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++...+. ..+|++
T Consensus 7 ~l~i~~l~~~y~~---~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 83 (257)
T 1g6h_A 7 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 83 (257)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred EEEEeeeEEEECC---EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCHHHHHhCC
Confidence 4899999999964 359999999999999999999999999999999999999999999999999987764 456788
Q ss_pred eEEEcCCCCCCh-hhHHHHHHHHhhh-------------------------chHHHhhhhchhhhhcCCCCCCChhHHHH
Q 040099 1089 MGVVSQEPVLFS-DTIRANIAEMANA-------------------------NGFISGLQEGYDTLVGERGVQLSGGQKQR 1142 (1236)
Q Consensus 1089 i~~V~Qdp~LF~-gTIreNL~~~a~~-------------------------~~~i~~lp~Gldt~vge~G~~LSGGQrQR 1142 (1236)
|+||||+|.+|. .|++||+.-.... .++++.+ |++........+||||||||
T Consensus 84 i~~v~q~~~l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkQr 161 (257)
T 1g6h_A 84 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKL 161 (257)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred EEEEccCCccCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHc--CCchhhCCCchhCCHHHHHH
Confidence 999999999886 5999999521111 1111111 56656667778999999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhH
Q 040099 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHES 1218 (1236)
Q Consensus 1143 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~e 1218 (1236)
++|||||+.+|+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+. .||+|++|++|++++.|++++
T Consensus 162 v~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~ 239 (257)
T 1g6h_A 162 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 239 (257)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHH
T ss_pred HHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEeCHHH
Confidence 999999999999999999999999999999999999875 4789999999999986 599999999999999999999
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-44 Score=398.61 Aligned_cols=208 Identities=26% Similarity=0.440 Sum_probs=171.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCeecCCCCHHHH-hc
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEVLIDGVNLKEFQLKWI-RE 461 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r~ 461 (1236)
|+++||+|+|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++.+.+.... +.
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 899999999952 5699999999999999999999999999999999999 89999999999999988776654 45
Q ss_pred ceEEEccCCCCCch-hHHHHHhcCCC-----CCCH----HHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCC-CChHHH
Q 040099 462 KIGLVSQEPVLLSS-SIRDNIAYGKT-----HATK----EEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQ-LSGGQK 529 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~~-ti~~ni~~g~~-----~~~~----~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~-LSgGqk 529 (1236)
.++||+|++.+|+. |++||+.++.. .... +++.++++.. |++ ........+ ||||||
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~~LSgGqk 149 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELL-----------DWDESYLSRYLNEGFSGGEK 149 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------TCCGGGGGSBTTCC----HH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHc-----------CCChhHhcCCcccCCCHHHH
Confidence 69999999999876 99999987521 1121 2233333333 342 223334456 999999
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh--cCeEEEEECCEEEEEeCcc
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN--ANIIAVIQQGKIVEKGTHS 606 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--ad~i~vl~~G~i~~~g~~~ 606 (1236)
||++|||||+++|++||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|+++
T Consensus 150 Qrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~ 229 (250)
T 2d2e_A 150 KRNEILQLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPE 229 (250)
T ss_dssp HHHHHHHHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHH
T ss_pred HHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHH
Confidence 99999999999999999999999999999999999999985 47899999999999876 5999999999999999987
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-43 Score=407.27 Aligned_cols=212 Identities=34% Similarity=0.479 Sum_probs=183.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.|+.+.+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (362)
T 2it1_A 3 EIKLENIVKKFGN---FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPPK--DRNV 77 (362)
T ss_dssp CEEEEEEEEESSS---SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEeEEEEECC---EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHh--HCcE
Confidence 3899999999963 3599999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 155 (362)
T 2it1_A 78 GLVFQNWALYPHMTVYKNIAFPLELRKAPREEIDKKVREVAKML--HIDKLLNRYPWQLSGGQQQRVAIARALVKEPEVL 155 (362)
T ss_dssp EEECTTCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCTTCTTCCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhhCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 9999995211 111222222 4544455667799999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|+||++|+|++.|+|+++++++...|.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 230 (362)
T 2it1_A 156 LLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVGTPDEVYYKPKYKFV 230 (362)
T ss_dssp EEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred EEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchHH
Confidence 99999999999999999999988753 789999999999985 4999999999999999999999987554443
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-43 Score=406.35 Aligned_cols=212 Identities=30% Similarity=0.494 Sum_probs=183.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 77 (359)
T 2yyz_A 3 SIRVVNLKKYFGK---VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPPK--YREV 77 (359)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GTTE
T ss_pred EEEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCChh--hCcE
Confidence 3899999999963 3589999999999999999999999999999999999999999999999999887754 6789
Q ss_pred EEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 78 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSgGq~QRvalArAL~~~P~lL 155 (359)
T 2yyz_A 78 GMVFQNYALYPHMTVFENIAFPLRARRISKDEVEKRVVEIARKL--LIDNLLDRKPTQLSGGQQQRVALARALVKQPKVL 155 (359)
T ss_dssp EEECSSCCCCTTSCHHHHHHGGGSSSCSHHHHTTHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEE
Confidence 999999999976 9999996111 112222222 4555556677899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 156 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 230 (359)
T 2yyz_A 156 LFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYGTPDEVYDSPKNMFV 230 (359)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred EEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 99999999999999999999988753 789999999999985 4999999999999999999999987555443
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=404.29 Aligned_cols=213 Identities=27% Similarity=0.452 Sum_probs=183.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
..|+++||+++|++ +.++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+. .|++
T Consensus 13 ~~l~~~~l~~~y~g--~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~--~~r~ 88 (355)
T 1z47_A 13 MTIEFVGVEKIYPG--GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLPP--QKRN 88 (355)
T ss_dssp EEEEEEEEEECCTT--STTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG--GGSS
T ss_pred ceEEEEEEEEEEcC--CCEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCCh--hhCc
Confidence 36999999999942 2358999999999999999999999999999999999999999999999999987654 4788
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
|+||+|++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++
T Consensus 89 ig~v~Q~~~l~~~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~r~~~~LSGGq~QRvalArAL~~~P~l 166 (355)
T 1z47_A 89 VGLVFQNYALFQHMTVYDNVSFGLREKRVPKDEMDARVRELLRFM--RLESYANRFPHELSGGQQQRVALARALAPRPQV 166 (355)
T ss_dssp EEEECGGGCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCCSE
T ss_pred EEEEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhHhcCCcccCCHHHHHHHHHHHHHHcCCCE
Confidence 9999999999976 9999995211 111222222 455555666789999999999999999999999
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 167 LLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 241 (355)
T 1z47_A 167 LLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFGTPEEVYEKPGTLF 241 (355)
T ss_dssp EEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred EEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCccchH
Confidence 999999999999999999999988753 7899999999999865 99999999999999999999998755444
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.6e-43 Score=393.63 Aligned_cols=216 Identities=25% Similarity=0.365 Sum_probs=179.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC--CCCCCcEEEECCeecCCCCHHHH-h
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF--YDPQAGEVLIDGVNLKEFQLKWI-R 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~--~~~~~G~i~~~g~~~~~~~~~~~-r 460 (1236)
-|+++||+|+|+ ++++|+||||+|++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...+.... +
T Consensus 20 ~l~~~~l~~~y~---~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVE---DKAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEEC---CEEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 599999999995 35799999999999999999999999999999999999 57999999999999988776655 4
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCC---------CCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCC-CCChHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGK---------THATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGI-QLSGGQ 528 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~---------~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~-~LSgGq 528 (1236)
..|+||+|++.+|+. |++||+.++. +..+.++..+ .+.+.++.+ |+++ ....... +|||||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--gl~~~~~~~~~~~~LSgGq 169 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQD-----LMEEKIALL--KMPEDLLTRSVNVGFSGGE 169 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHH-----HHHHHHHHT--TCCTTTTTSBTTTTCCHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHH-----HHHHHHHHc--CCChhHhcCCcccCCCHHH
Confidence 569999999998876 9999997532 1122222211 122333333 5543 2333444 599999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh--cCeEEEEECCEEEEEeCc
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN--ANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~--ad~i~vl~~G~i~~~g~~ 605 (1236)
|||++|||||+.+|+|||||||||+||+.+++.+.+.|+++. +|+|+|+|||+++.+.. ||+|++|++|++++.|++
T Consensus 170 ~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~ 249 (267)
T 2zu0_C 170 KKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDF 249 (267)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECT
T ss_pred HHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCH
Confidence 999999999999999999999999999999999999999885 47899999999999875 899999999999999998
Q ss_pred cccc
Q 040099 606 SELL 609 (1236)
Q Consensus 606 ~~l~ 609 (1236)
+++.
T Consensus 250 ~~~~ 253 (267)
T 2zu0_C 250 TLVK 253 (267)
T ss_dssp THHH
T ss_pred HHHh
Confidence 8764
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-43 Score=399.35 Aligned_cols=203 Identities=27% Similarity=0.473 Sum_probs=166.5
Q ss_pred cccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.+.|+++||+|.| .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||
T Consensus 38 ~~~l~~~~l~~~~-----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG-----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99 (290)
T ss_dssp ------------C-----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS-------------
T ss_pred CceEEEEEEEEcC-----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC-------------
Confidence 3569999999964 2589999999999999999999999999999999999999999999998
Q ss_pred ceEEEcCCCCCChhhHHHHHH-------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1088 QMGVVSQEPVLFSDTIRANIA-------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~gTIreNL~-------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+|+||||+|.+|++|++||+. +..++.+++..+|.++++.+++.+.+||||||||++|||||+++|+
T Consensus 100 ~i~~v~Q~~~l~~~tv~enl~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lAraL~~~p~ 179 (290)
T 2bbs_A 100 RISFCSQNSWIMPGTIKENIIGVSYDEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDAD 179 (290)
T ss_dssp CEEEECSSCCCCSSBHHHHHHTTCCCHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEEeCCCccCcccHHHHhhCcccchHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHHHHHHCCCC
Confidence 499999999999999999985 1123344566778888899999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHH-HHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1155 ILLLDEATSALDIESERVVQDAL-DQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L-~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+||||||||+||+.++..+.+.+ ++..+++|+|+|||+++.+..||+|++|++|++++.|+|+++++. ...|.+
T Consensus 180 lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~~~d~i~~l~~G~i~~~g~~~~l~~~-~~~~~~ 254 (290)
T 2bbs_A 180 LYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLKKADKILILHEGSSYFYGTFSELQNL-RPDFSS 254 (290)
T ss_dssp EEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHHHSSEEEEEETTEEEEEECHHHHHHH-CHHHHH
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHcCCEEEEEECCeEEEeCCHHHHhhh-cHHHHH
Confidence 99999999999999999999874 444568999999999999988999999999999999999999864 344443
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-43 Score=387.27 Aligned_cols=203 Identities=33% Similarity=0.488 Sum_probs=175.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|+. +|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.+||.++.+.+ ..|++|+
T Consensus 2 l~~~~l~~~y~~-----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~--~~~~~i~ 73 (240)
T 2onk_A 2 FLKVRAEKRLGN-----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP--PERRGIG 73 (240)
T ss_dssp CEEEEEEEEETT-----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC--TTTSCCB
T ss_pred EEEEEEEEEeCC-----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc--hhhCcEE
Confidence 689999999952 49999999999 999999999999999999999999999999999999997643 3578899
Q ss_pred EEcCCCCCChh-hHHHHHHHHh----------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA----------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a----------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
||||+|.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++|||||+++|++||||
T Consensus 74 ~v~q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGqkqRv~lAral~~~p~lllLD 151 (240)
T 2onk_A 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLD 151 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEE
T ss_pred EEcCCCccCCCCcHHHHHHHHHHHcCCchHHHHHHHHHHHc--CCHHHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEe
Confidence 99999999987 9999995211 111222222 4444455667789999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1160 EATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
||||+||+.+.+.+.+.|+++.+ ++|+|+|||+++.+.. ||+|++|++|++++.|+++++++++
T Consensus 152 EPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g~~~~~~~~~ 218 (240)
T 2onk_A 152 EPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAK 218 (240)
T ss_dssp STTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSC
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCc
Confidence 99999999999999999998753 7899999999998854 9999999999999999999998764
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=397.21 Aligned_cols=208 Identities=25% Similarity=0.389 Sum_probs=179.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc--cCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ--KLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~--~i~~~~lR~ 1087 (1236)
-|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. ..+...+|+
T Consensus 21 ~l~~~~l~~~y~~---~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~~ 97 (279)
T 2ihy_A 21 LIQLDQIGRMKQG---KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQ 97 (279)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCHHHHHT
T ss_pred eEEEEeEEEEECC---EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCHHHHcC
Confidence 5999999999964 35999999999999999999999999999999999999999999999999998 777788899
Q ss_pred ceEEEcCCCCC-Chh--hHHHHHHHHh----------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1088 QMGVVSQEPVL-FSD--TIRANIAEMA----------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1088 ~i~~V~Qdp~L-F~g--TIreNL~~~a----------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
+|+||||+|.+ |.. |++||+.-.. .+.+.++.+ |++........+||||||||++||||
T Consensus 98 ~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~LSgGqkqRv~lAra 175 (279)
T 2ihy_A 98 HIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLV--GMSAKAQQYIGYLSTGEKQRVMIARA 175 (279)
T ss_dssp TEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHHHHHHHH
T ss_pred cEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHH
Confidence 99999999864 554 9999995210 011112211 45555566778999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeE--EEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTT--LVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~Tv--I~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+.+|++||||||||+||+.+.+.+.+.|+++.+ ++|+ |+|||+++.+. .||+|++|++|++++.|+++++++.
T Consensus 176 L~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 253 (279)
T 2ihy_A 176 LMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTS 253 (279)
T ss_dssp HHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEEEHHHHCSH
T ss_pred HhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEECCHHHHhcc
Confidence 9999999999999999999999999999988753 7899 99999999985 5999999999999999999998754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-43 Score=403.69 Aligned_cols=210 Identities=30% Similarity=0.463 Sum_probs=181.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|.+ . +|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+.+. .|++|+
T Consensus 2 l~~~~l~~~y~~---~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~--~~r~ig 75 (348)
T 3d31_A 2 IEIESLSRKWKN---F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP--EKHDIA 75 (348)
T ss_dssp EEEEEEEEECSS---C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH--HHHTCE
T ss_pred EEEEEEEEEECC---E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCch--hhCcEE
Confidence 689999999953 4 8999999999999999999999999999999999999999999999999987654 478899
Q ss_pred EEcCCCCCChh-hHHHHHHHHh---------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA---------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a---------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
||||++.+|+. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+++|++|||||
T Consensus 76 ~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSgGq~QRvalAraL~~~P~lLLLDE 153 (348)
T 3d31_A 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (348)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EEecCcccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHcCCCEEEEEC
Confidence 99999999986 9999996211 112222222 45444556677999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1161 ATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||+||+.+...+.+.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 154 P~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~~~~~p~~~~~ 224 (348)
T 3d31_A 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224 (348)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTHH
T ss_pred ccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCcccHHH
Confidence 9999999999999999998743 789999999999885 4999999999999999999999987555553
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-43 Score=390.70 Aligned_cols=207 Identities=27% Similarity=0.479 Sum_probs=178.9
Q ss_pred EEEeEEEEECCCCCC--cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPH--IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~--~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|+++||+++|+.... .++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++... .+|++
T Consensus 3 l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~---~~~~~ 79 (266)
T 2yz2_A 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY---EIRRN 79 (266)
T ss_dssp EEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH---HHGGG
T ss_pred EEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH---Hhhhh
Confidence 789999999962111 3699999999999999999999999999999999999999999999999998653 67889
Q ss_pred eEEEcCCC--CCChhhHHHHHHHHhh-----------hchHHHhhhhchh--hhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1089 MGVVSQEP--VLFSDTIRANIAEMAN-----------ANGFISGLQEGYD--TLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1089 i~~V~Qdp--~LF~gTIreNL~~~a~-----------~~~~i~~lp~Gld--t~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
|+||||+| .++..|++||+.-... +.+.++.+ |++ ........+||||||||++|||||+++|
T Consensus 80 i~~v~q~~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~~LSgGq~qRv~lAraL~~~p 157 (266)
T 2yz2_A 80 IGIAFQYPEDQFFAERVFDEVAFAVKNFYPDRDPVPLVKKAMEFV--GLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEP 157 (266)
T ss_dssp EEEECSSGGGGCCCSSHHHHHHHTTTTTCTTSCSHHHHHHHHHHT--TCCHHHHTTCCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred EEEEeccchhhcCCCcHHHHHHHHHHhcCCHHHHHHHHHHHHHHc--CcCCcccccCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999997 5778899999963211 11122211 555 4556667899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+|||||||||+||+.+.+.+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++++.
T Consensus 158 ~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~ 228 (266)
T 2yz2_A 158 DILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDGTRMEFLEK 228 (266)
T ss_dssp SEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred CEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhcC
Confidence 9999999999999999999999999874 57899999999999976 999999999999999999999875
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-43 Score=405.39 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=179.0
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|.+ ..+|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++...+.. +++|
T Consensus 11 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~--~r~i 85 (372)
T 1v43_A 11 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 85 (372)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCChh--hCcE
Confidence 4999999999963 3589999999999999999999999999999999999999999999999999887754 5789
Q ss_pred EEEcCCCCCChh-hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
+||||++.+|.. |++||+.-. ..+.+.++.+ |++........+||||||||+||||||+++|++|
T Consensus 86 g~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~~~P~lL 163 (372)
T 1v43_A 86 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 163 (372)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEEecCcccCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcCCCEE
Confidence 999999999975 999999510 1122223322 5555566778899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+. .||+|++|++|+|++.|+|+++++++...|.
T Consensus 164 LLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~~ 238 (372)
T 1v43_A 164 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 238 (372)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred EEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHHhCcccHHH
Confidence 99999999999999999999988753 789999999999985 5999999999999999999999987555553
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-43 Score=392.70 Aligned_cols=208 Identities=20% Similarity=0.319 Sum_probs=179.8
Q ss_pred EEEEeEEEECCCC-CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 385 IELKDVNFSYPAR-PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 385 i~~~~v~f~y~~~-~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
|+++|++++|++. ..+++|+|+||+|+ ||+++|+||||||||||+++|+|++ |++|+|.++|+++.+. .. |++|
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 7899999999631 01469999999999 9999999999999999999999999 9999999999998754 23 6789
Q ss_pred E-EEccCCCCCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 G-LVSQEPVLLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~-~v~Q~~~l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+ ||+|++.+ +.|++||+.++.+ ...++++.++++.. |++ ...+.++.+||||||||++|||||+
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~-----------gl~~~~~~~~~~~LSgGqkqRv~lAraL~ 144 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL-----------KLGEEILRRKLYKLSAGQSVLVRTSLALA 144 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT-----------TCCGGGGGSBGGGSCHHHHHHHHHHHHHH
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc-----------CCChhHhcCChhhCCHHHHHHHHHHHHHH
Confidence 9 99999998 8899999998532 23445555555544 454 5566667799999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh-hcC-eEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR-NAN-IIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~ad-~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
.+|++||||||||+||+.+++.+.+.|+++.+ |+|++||+++.+. .|| ++++|++|++++.|+++++.+.
T Consensus 145 ~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 145 SQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp TCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred hCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999999999999998754 9999999999986 599 9999999999999999988653
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-43 Score=388.84 Aligned_cols=220 Identities=26% Similarity=0.366 Sum_probs=175.2
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc--cCCCCcEEEECCeecccCChHHH-hc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKWL-RQ 1087 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~--~~~~~G~I~idG~di~~i~~~~l-R~ 1087 (1236)
|+++||+++|+. .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+...+.... |+
T Consensus 4 l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (250)
T 2d2e_A 4 LEIRDLWASIDG---ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPDERARK 80 (250)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHHHHHHT
T ss_pred EEEEeEEEEECC---EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHHHHHhC
Confidence 789999999964 3599999999999999999999999999999999999 89999999999999988876655 55
Q ss_pred ceEEEcCCCCCChh-hHHHHHHHHh----hh----chHHHhhhh-----chh-hhhcCCCCC-CChhHHHHHHHHHHHcc
Q 040099 1088 QMGVVSQEPVLFSD-TIRANIAEMA----NA----NGFISGLQE-----GYD-TLVGERGVQ-LSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF~g-TIreNL~~~a----~~----~~~i~~lp~-----Gld-t~vge~G~~-LSGGQrQRlaLARALlr 1151 (1236)
.++||||+|.+|.+ |++||+.-.. +. .+.....++ |++ ........+ ||||||||++|||||++
T Consensus 81 ~i~~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGqkQrv~iAraL~~ 160 (250)
T 2d2e_A 81 GLFLAFQYPVEVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESYLSRYLNEGFSGGEKKRNEILQLLVL 160 (250)
T ss_dssp TBCCCCCCCC-CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGGGGSBTTCC----HHHHHHHHHHHHH
T ss_pred cEEEeccCCccccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHHHHHHc
Confidence 69999999999886 9999985211 10 111112222 453 233444456 99999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+|+|||||||||+||+.+...+.+.|++.. +++|+|+|||+++.+.. ||+|++|++|++++.|+++.........|.
T Consensus 161 ~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~~~~~~ 240 (250)
T 2d2e_A 161 EPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGGPELALELEAKGYE 240 (250)
T ss_dssp CCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEESHHHHHHHHHHCHH
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeCHHHHHHHHHHHHH
Confidence 999999999999999999999999999875 47899999999999976 599999999999999999833221122366
Q ss_pred Hhhhc
Q 040099 1229 SLIEP 1233 (1236)
Q Consensus 1229 ~L~~~ 1233 (1236)
.+.+.
T Consensus 241 ~~~~~ 245 (250)
T 2d2e_A 241 WLKEK 245 (250)
T ss_dssp HHHHC
T ss_pred HHHhh
Confidence 65543
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-43 Score=390.31 Aligned_cols=220 Identities=24% Similarity=0.340 Sum_probs=180.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc--cCCCCcEEEECCeecccCChHHH-h
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF--YDPSSGHITLDGVEIQKLQVKWL-R 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~--~~~~~G~I~idG~di~~i~~~~l-R 1086 (1236)
-|+++||+++|.+ .++|+|+||+|++||++||+||||||||||+++|.|+ ++|++|+|.+||.|+...+.... |
T Consensus 20 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~~~~~~~~~~ 96 (267)
T 2zu0_C 20 MLSIKDLHVSVED---KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLALSPEDRAG 96 (267)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGGGSCHHHHHH
T ss_pred eEEEEeEEEEECC---EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCcCCHHHHhh
Confidence 5999999999963 3699999999999999999999999999999999999 57899999999999988877665 4
Q ss_pred cceEEEcCCCCCChh-hHHHHHHHHh-hh--------------chHHHhhh--hchhhhh-cCCCC-CCChhHHHHHHHH
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIAEMA-NA--------------NGFISGLQ--EGYDTLV-GERGV-QLSGGQKQRVAIA 1146 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~~~a-~~--------------~~~i~~lp--~Gldt~v-ge~G~-~LSGGQrQRlaLA 1146 (1236)
+.++||||+|.+|.+ |++||+.... .. .+.+..+- -|+++.. ..... +||||||||++||
T Consensus 97 ~~i~~v~Q~~~l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~LSgGq~QRv~iA 176 (267)
T 2zu0_C 97 EGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRNDIL 176 (267)
T ss_dssp HTEEEECSSCCCCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTTTCCHHHHHHHHHH
T ss_pred CCEEEEccCccccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCcccCCCHHHHHHHHHH
Confidence 569999999999876 8999985211 00 00111111 1444322 33333 5999999999999
Q ss_pred HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh--cCEEEEEeCCEEEEecChhHHhhcc
Q 040099 1147 RAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN--AHLIAVVSQGMIVEKGSHESLISTK 1223 (1236)
Q Consensus 1147 RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~--aD~I~Vl~~G~Ive~Gt~~eLl~~~ 1223 (1236)
|||+++|+|||||||||+||+.+.+.+.+.|+++. +++|+|+|||+++.+.. ||+|++|++|++++.|+++++...+
T Consensus 177 raL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~~~ 256 (267)
T 2zu0_C 177 QMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSGDFTLVKQLE 256 (267)
T ss_dssp HHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEEEEEECTTHHHHHH
T ss_pred HHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEEEEEcCHHHHhhhh
Confidence 99999999999999999999999999999999875 47899999999999875 8999999999999999999875443
Q ss_pred CcccHHhhh
Q 040099 1224 NGIYTSLIE 1232 (1236)
Q Consensus 1224 ~g~y~~L~~ 1232 (1236)
...|..+.+
T Consensus 257 ~~~~~~~~~ 265 (267)
T 2zu0_C 257 EQGYGWLTE 265 (267)
T ss_dssp TTTCTTSSC
T ss_pred hcchhhhhh
Confidence 333654443
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.4e-43 Score=404.39 Aligned_cols=212 Identities=27% Similarity=0.451 Sum_probs=182.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc------CChH
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK------LQVK 1083 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~------i~~~ 1083 (1236)
.|+++||+++|.+ .++|+|+||+|++||+++|+||||||||||+++|.|+++|++|+|.+||.++.+ .+..
T Consensus 3 ~l~~~~l~~~y~~---~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~ 79 (372)
T 1g29_1 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (372)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred EEEEEeEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHh
Confidence 3899999999963 359999999999999999999999999999999999999999999999999976 5543
Q ss_pred HHhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc
Q 040099 1084 WLRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl 1150 (1236)
+++|+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||+||||||+
T Consensus 80 --~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 80 --DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp --GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHH
T ss_pred --HCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHC--CCchHhcCCcccCCHHHHHHHHHHHHHh
Confidence 6789999999999975 9999995211 112222222 4555556677899999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
++|++||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 235 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTF 235 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHH
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeCCHHHHHhCcccHH
Confidence 99999999999999999999999999988753 7899999999999864 99999999999999999999998755555
Q ss_pred H
Q 040099 1228 T 1228 (1236)
Q Consensus 1228 ~ 1228 (1236)
.
T Consensus 236 ~ 236 (372)
T 1g29_1 236 V 236 (372)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-43 Score=389.55 Aligned_cols=201 Identities=26% Similarity=0.385 Sum_probs=172.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++++|++ ++++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|. ++++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999951 24699999999999999999999999999999999999999999998 25689
Q ss_pred EEEccCCCCC-chhHHHHHhcCCCC-------CC---HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 464 GLVSQEPVLL-SSSIRDNIAYGKTH-------AT---KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 464 ~~v~Q~~~l~-~~ti~~ni~~g~~~-------~~---~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+||||++.+| ..|++||+.++... .. .+++.++++..++. ......+.+||||||||+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-----------~~~~~~~~~LSgGq~qrv 137 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLT-----------HLAKREFTSLSGGQRQLI 137 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCG-----------GGTTSBGGGSCHHHHHHH
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCCh-----------HHhcCChhhCCHHHHHHH
Confidence 9999999887 56999999986421 11 23344555555443 334455678999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHh-hcCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIR-NANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~-~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|++||||||||+||+.+.+.+.+.|+++.+ |+|+|++||+++.+. .||++++|++|+ ++.|+++++.
T Consensus 138 ~lAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~ 216 (253)
T 2nq2_C 138 LIARAIASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNIL 216 (253)
T ss_dssp HHHHHHHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHC
T ss_pred HHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHh
Confidence 999999999999999999999999999999999998854 789999999999985 599999999999 9999999987
Q ss_pred cc
Q 040099 610 EN 611 (1236)
Q Consensus 610 ~~ 611 (1236)
..
T Consensus 217 ~~ 218 (253)
T 2nq2_C 217 TS 218 (253)
T ss_dssp CH
T ss_pred Cc
Confidence 53
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.4e-43 Score=404.81 Aligned_cols=213 Identities=29% Similarity=0.385 Sum_probs=182.2
Q ss_pred cEEEeEEEEECCCCCCcc--cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHH
Q 040099 1010 EVQFLRVSFKYPTRPHIE--VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKW 1084 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~--vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~ 1084 (1236)
.|+++||+++|.+ .+ +|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+.+.+ ...
T Consensus 3 ~l~i~~l~~~y~~---~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK---GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPP 79 (353)
T ss_dssp CEEEEEEEEEEGG---GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCG
T ss_pred EEEEEeEEEEECC---EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccCCh
Confidence 3899999999963 35 899999999999999999999999999999999999999999999999997621 233
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK 1151 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr 1151 (1236)
.|++|+||||++.+|.. |++||+.-.. .+.+.++.+ |++........+||||||||++|||||++
T Consensus 80 ~~r~ig~v~Q~~~l~~~ltv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~L~~~~~~~~~~LSGGq~QRvalAraL~~ 157 (353)
T 1oxx_K 80 EDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVK 157 (353)
T ss_dssp GGSCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTT
T ss_pred hhCCEEEEeCCCccCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 57899999999999986 9999995111 112222222 45555556677999999999999999999
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
+|++||||||||+||+.+...+.+.|+++.+ +.|+|+|||+++.+.. ||+|++|++|+|++.|+|+++++++...|
T Consensus 158 ~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g~~~~l~~~p~~~~ 236 (353)
T 1oxx_K 158 DPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQ 236 (353)
T ss_dssp CCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHH
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCcccHH
Confidence 9999999999999999999999999988753 7899999999999865 99999999999999999999998755444
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-42 Score=383.21 Aligned_cols=201 Identities=23% Similarity=0.343 Sum_probs=178.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++ ++|+|+||+|++||++||+||||||||||+++|.|+++|+ |+|.+||.++.+.+...+|++++
T Consensus 5 l~~~~l~~~-------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~~~~~~~i~ 76 (249)
T 2qi9_C 5 MQLQDVAES-------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSATKLALHRA 76 (249)
T ss_dssp EEEEEEEET-------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCHHHHHHHEE
T ss_pred EEEEceEEE-------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCHHHHhceEE
Confidence 789999986 3899999999999999999999999999999999999999 99999999999888889999999
Q ss_pred EEcCCCCCChh-hHHHHHHHHh-------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC-------E
Q 040099 1091 VVSQEPVLFSD-TIRANIAEMA-------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK-------I 1155 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~a-------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~-------I 1155 (1236)
||||+|.+|.+ |++||+.-.. .+.+.++.+ |++........+||||||||++|||||+++|+ +
T Consensus 77 ~v~q~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~~~~~~~~l 154 (249)
T 2qi9_C 77 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 154 (249)
T ss_dssp EECSCCCCCTTCBHHHHHHTTCSSTTCHHHHHHHHHHT--TCGGGTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred EECCCCccCCCCcHHHHHHHhhccCCcHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHHcCCCcCCCCCeE
Confidence 99999998876 9999995211 111222221 55555667778999999999999999999999 9
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhh
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
||||||||+||+.+...+.+.|+++. +++|+|+|||+++.+. .||+|++|++|++++.|+++++++
T Consensus 155 llLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g~~~~~~~ 222 (249)
T 2qi9_C 155 LLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLT 222 (249)
T ss_dssp EEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEEEHHHHSC
T ss_pred EEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCCHHHHhc
Confidence 99999999999999999999999874 5789999999999985 599999999999999999999976
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-42 Score=381.90 Aligned_cols=202 Identities=18% Similarity=0.298 Sum_probs=176.6
Q ss_pred EEEeEEEEECCCC-CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1011 VQFLRVSFKYPTR-PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~-~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
|+++||+++|+.. ...++|+|+||+|+ ||++||+||||||||||+++|.|++ |++|+|.++|.++.+. .. |+++
T Consensus 2 l~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~--~~-~~~i 76 (263)
T 2pjz_A 2 IQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI--RN-YIRY 76 (263)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC--SC-CTTE
T ss_pred EEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch--HH-hhhe
Confidence 6899999999641 01359999999999 9999999999999999999999999 9999999999999765 33 7899
Q ss_pred E-EEcCCCCCChhhHHHHHHHHhh--------hchHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe
Q 040099 1090 G-VVSQEPVLFSDTIRANIAEMAN--------ANGFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD 1159 (1236)
Q Consensus 1090 ~-~V~Qdp~LF~gTIreNL~~~a~--------~~~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD 1159 (1236)
+ ||||+|.+ ..|++||+.-... +.+.++.+ |++ ...+....+||||||||++|||||+++|++||||
T Consensus 77 ~~~v~Q~~~l-~~tv~enl~~~~~~~~~~~~~~~~~l~~~--gl~~~~~~~~~~~LSgGqkqRv~lAraL~~~p~lllLD 153 (263)
T 2pjz_A 77 STNLPEAYEI-GVTVNDIVYLYEELKGLDRDLFLEMLKAL--KLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLD 153 (263)
T ss_dssp EECCGGGSCT-TSBHHHHHHHHHHHTCCCHHHHHHHHHHT--TCCGGGGGSBGGGSCHHHHHHHHHHHHHHTCCSEEEEE
T ss_pred EEEeCCCCcc-CCcHHHHHHHhhhhcchHHHHHHHHHHHc--CCChhHhcCChhhCCHHHHHHHHHHHHHHhCCCEEEEE
Confidence 9 99999998 8899999963221 22333333 666 6677888899999999999999999999999999
Q ss_pred cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh-hcC-EEEEEeCCEEEEecChhHHhhc
Q 040099 1160 EATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK-NAH-LIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1160 EaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~aD-~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||+||+.+.+.+.+.|++..+ |+|+|||+++.+. .|| +|++|++|++++.|+++++.+.
T Consensus 154 EPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g~~~~l~~~ 216 (263)
T 2pjz_A 154 EPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPISVSELLES 216 (263)
T ss_dssp CTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEEEHHHHHTE
T ss_pred CCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEecCHHHHHhh
Confidence 99999999999999999998754 9999999999985 599 9999999999999999999854
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-42 Score=371.88 Aligned_cols=194 Identities=23% Similarity=0.381 Sum_probs=165.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++||+++|+ + ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++. .+|++|
T Consensus 10 ~l~~~~ls~~y~---~-~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYD---K-PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESS---S-EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeC---C-eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 599999999995 3 6999999999999999999999999999999999999999999999999886 257889
Q ss_pred EEEccCCCCCch-hHHHHHhcCCC----CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYGKT----HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g~~----~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+||+|++.+|.. |++||+.++.. ....+++.++++.. |++.. +..+.+||||||||++|||||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~-----------gl~~~-~~~~~~LSgGqkqrv~laraL 148 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV-----------EVLDL-KKKLGELSQGTIRRVQLASTL 148 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT-----------TCCCT-TSBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc-----------CCCcC-CCChhhCCHHHHHHHHHHHHH
Confidence 999999999876 99999988521 12244555555444 45555 666789999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
+.+|++||||||||+||+.+...+.+.|+++. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 149 ~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 149 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred HhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999999999999998875 47899999999999877 67765 456665
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-41 Score=373.33 Aligned_cols=197 Identities=26% Similarity=0.369 Sum_probs=168.4
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
-|+++||+++|+. +.++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|. +|++|
T Consensus 4 ~l~i~~l~~~y~~--~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~-------------~~~~i 68 (253)
T 2nq2_C 4 ALSVENLGFYYQA--ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE-------------VYQSI 68 (253)
T ss_dssp EEEEEEEEEEETT--TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEE-------------ECSCE
T ss_pred eEEEeeEEEEeCC--CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEE-------------EeccE
Confidence 3899999999962 13599999999999999999999999999999999999999999998 36789
Q ss_pred EEEcCCCCCC-hhhHHHHHHHHhhh--------c----hHHHh-hh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLF-SDTIRANIAEMANA--------N----GFISG-LQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF-~gTIreNL~~~a~~--------~----~~i~~-lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||+|.+| ..|++||+.-.... . +.+.. +. -|++........+||||||||++|||||+++|+
T Consensus 69 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~LSgGq~qrv~lAraL~~~p~ 148 (253)
T 2nq2_C 69 GFVPQFFSSPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHLAKREFTSLSGGQRQLILIARAIASECK 148 (253)
T ss_dssp EEECSCCCCSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGGTTSBGGGSCHHHHHHHHHHHHHHTTCS
T ss_pred EEEcCCCccCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHHhcCChhhCCHHHHHHHHHHHHHHcCCC
Confidence 9999999887 56999999621100 0 11111 11 155555666778999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhh-hcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIK-NAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~-~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||||||+||+.+...+.+.|++..+ ++|+|+|||+++.+. .||+|++|++|+ ++.|+++++++.
T Consensus 149 lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g~~~~~~~~ 218 (253)
T 2nq2_C 149 LILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFGETRNILTS 218 (253)
T ss_dssp EEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEEEHHHHCCH
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecCCHHHHhCc
Confidence 9999999999999999999999998753 789999999999985 599999999999 999999998753
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-41 Score=360.38 Aligned_cols=188 Identities=18% Similarity=0.327 Sum_probs=161.5
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ++|+|+||+|++||++||+||||||||||+++|.|+++|++|+|.+||.++. .+|+++
T Consensus 10 ~l~~~~ls~~y~~----~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~-----~~~~~i 80 (214)
T 1sgw_A 10 KLEIRDLSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT-----KVKGKI 80 (214)
T ss_dssp EEEEEEEEEESSS----EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG-----GGGGGE
T ss_pred eEEEEEEEEEeCC----eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh-----hhcCcE
Confidence 6999999999963 5999999999999999999999999999999999999999999999999986 368899
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhh----------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMAN----------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~----------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
+||||+|.+|.+ |++||+.-... +.+.++.+ |++.. +..+.+||||||||++|||||+++|++|||
T Consensus 81 ~~v~q~~~~~~~~tv~enl~~~~~~~~~~~~~~~~~~~l~~~--gl~~~-~~~~~~LSgGqkqrv~laraL~~~p~lllL 157 (214)
T 1sgw_A 81 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESV--EVLDL-KKKLGELSQGTIRRVQLASTLLVNAEIYVL 157 (214)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHT--TCCCT-TSBGGGSCHHHHHHHHHHHHTTSCCSEEEE
T ss_pred EEEeCCCcCCCCCCHHHHHHHHHHhcCCchHHHHHHHHHHHc--CCCcC-CCChhhCCHHHHHHHHHHHHHHhCCCEEEE
Confidence 999999999987 99999953211 11222222 56665 677889999999999999999999999999
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEE
Q 040099 1159 DEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMI 1210 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~I 1210 (1236)
|||||+||+.+...+.+.|++.. +++|+|++||+++.+.. ||+|+ +.+|+|
T Consensus 158 DEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~-~~~~~~ 210 (214)
T 1sgw_A 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLH-KYSTKI 210 (214)
T ss_dssp ESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGG-GGBC--
T ss_pred ECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEE-EeCCcc
Confidence 99999999999999999998875 47899999999999987 56655 556776
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.2e-38 Score=385.20 Aligned_cols=168 Identities=14% Similarity=0.066 Sum_probs=123.9
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+.+++++.|+.- ..+|++ .|++|+.++|+|+||||||||++.+++...|. |. +.+.+
T Consensus 259 ~~~~l~~g~~~l--d~vL~g---~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~ 315 (525)
T 1tf7_A 259 SNVRVSSGVVRL--DEMCGG---GFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILF 315 (525)
T ss_dssp CCCEECCSCHHH--HHHTTS---SEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEE
T ss_pred ccceeecChHHH--HHHhCC---CCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEE
Confidence 455677666420 124444 99999999999999999999999999998875 53 12456
Q ss_pred EcCCCCCChhhHHHHHHHHhhhchHHHhh-hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHH--
Q 040099 1092 VSQEPVLFSDTIRANIAEMANANGFISGL-QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE-- 1168 (1236)
Q Consensus 1092 V~Qdp~LF~gTIreNL~~~a~~~~~i~~l-p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~-- 1168 (1236)
++||+. .++++|... .+.. +..+ ..|+..........|||||+||+++||++..+|++||+| ||++||..
T Consensus 316 ~~ee~~---~~l~~~~~~-~g~~--~~~~~~~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~ 388 (525)
T 1tf7_A 316 AYEESR---AQLLRNAYS-WGMD--FEEMERQNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVS 388 (525)
T ss_dssp ESSSCH---HHHHHHHHT-TSCC--HHHHHHTTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSC
T ss_pred EEeCCH---HHHHHHHHH-cCCC--HHHHHhCCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCC
Confidence 677762 355555421 1111 0111 123333334455679999999999999999999999999 99999999
Q ss_pred ---HHHHHHHHHHHHc-CCCeEEEEecCc----------hhhhh-cCEEEEEeCCE
Q 040099 1169 ---SERVVQDALDQVM-VDRTTLVVAHRL----------STIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1169 ---te~~I~~~L~~~~-~~~TvI~IaHRl----------~ti~~-aD~I~Vl~~G~ 1209 (1236)
..+.+.+.++.+. .++|+|+|+|.. ..+.. ||+|++|++|+
T Consensus 389 ~~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 389 NNAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred hHHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888888887654 478999999998 66654 99999999886
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-39 Score=367.13 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=198.0
Q ss_pred HHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEE
Q 040099 314 ILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFS 393 (1236)
Q Consensus 314 v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~ 393 (1236)
...+..+-+.+.+|+.+..+ ..|+.+++..+..++++.++.+|+.++++.+++..... ...+...+.|+++||+|+
T Consensus 35 ~a~~~~~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~---~~~~~~~~~i~~~~vs~~ 110 (305)
T 2v9p_A 35 YALAAGSDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE---GSWKSILTFFNYQNIELI 110 (305)
T ss_dssp HHHTTTTCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS---CCTHHHHHHHHHTTCCHH
T ss_pred HHHhcCccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC---CcccccCCeEEEEEEEEE
Confidence 34556677888888877656 57899999999999999999999999998755432111 111112245899999999
Q ss_pred CCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC
Q 040099 394 YPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL 473 (1236)
Q Consensus 394 y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 473 (1236)
|+ .++|+|+||+|++|++++|+||||||||||+++|+|++ +|+| ++|++|++++|
T Consensus 111 y~----~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf 165 (305)
T 2v9p_A 111 TF----INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFW 165 (305)
T ss_dssp HH----HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGG
T ss_pred cC----hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccc
Confidence 95 36999999999999999999999999999999999999 8988 46789999999
Q ss_pred chhHHH-HHhcCCCCCCHHHHHHHHHHhccHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcC
Q 040099 474 SSSIRD-NIAYGKTHATKEEIQAAAEAANASHFIKN-LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT 551 (1236)
Q Consensus 474 ~~ti~~-ni~~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~t 551 (1236)
.+|++| ||.++ ++.++ ++++++.. +|+|++ |.+|||||||| |||++++|+||| |
T Consensus 166 ~~ti~~~ni~~~-~~~~~----------~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----T 221 (305)
T 2v9p_A 166 LASLADTRAALV-DDATH----------ACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----T 221 (305)
T ss_dssp GGGGTTCSCEEE-EEECH----------HHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----E
T ss_pred cccHHHHhhccC-ccccH----------HHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----E
Confidence 999998 99987 33342 34567777 899988 77999999999 999999999999 9
Q ss_pred CCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhhh
Q 040099 552 SALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQE 624 (1236)
Q Consensus 552 s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~~ 624 (1236)
|+||+.+++.+.. +|||+++++.||+| +|++|+|++.|+|+++ ++.|++++..+.
T Consensus 222 s~LD~~~~~~i~~-------------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~~ 276 (305)
T 2v9p_A 222 SNIDVQAEDRYLY-------------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRLD 276 (305)
T ss_dssp ESSCSTTCGGGGG-------------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTTT
T ss_pred CCCCHHHHHHHHH-------------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHcc
Confidence 9999999988752 29999999999999 9999999999999999 478998887554
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-38 Score=354.99 Aligned_cols=229 Identities=17% Similarity=0.251 Sum_probs=186.8
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCCCccccCccCCccccEEEeEEEEECCCCCC
Q 040099 946 TFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPH 1025 (1236)
Q Consensus 946 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~~~~~~~~~~~~~~~~g~I~f~~Vsf~Y~~~~~ 1025 (1236)
+.+.+.+++.+... ..++..+...+..+.++..+.+|+.++++.+++..... . ..++..+.|+++||+|+|+
T Consensus 41 ~~~n~~afl~~~~q-~~~v~~~~~~~~~~~~a~~a~~ri~~~l~~~~~~~~~~--~-~~~~~~~~i~~~~vs~~y~---- 112 (305)
T 2v9p_A 41 SDSNARAFLATNSQ-AKHVKDCATMVRHYLRAETQALSMPAYIKARCKLATGE--G-SWKSILTFFNYQNIELITF---- 112 (305)
T ss_dssp TCHHHHHHTTCTTH-HHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHCCSS--C-CTHHHHHHHHHTTCCHHHH----
T ss_pred ccHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCC--C-cccccCCeEEEEEEEEEcC----
Confidence 33444444444333 47788899999999999999999999998765432211 1 1112234699999999996
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.++|+|+||+|++||++|||||||||||||+++|.|++ +|+| +++++|+|.+|.+|+++
T Consensus 113 ~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I------------------~~~v~q~~~lf~~ti~~ 171 (305)
T 2v9p_A 113 INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSV------------------LSFANHKSHFWLASLAD 171 (305)
T ss_dssp HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEE------------------ECGGGTTSGGGGGGGTT
T ss_pred hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceE------------------EEEecCccccccccHHH
Confidence 35999999999999999999999999999999999999 8998 45789999999999998
Q ss_pred -HHHH----HhhhchHHHh-hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040099 1106 -NIAE----MANANGFISG-LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179 (1236)
Q Consensus 1106 -NL~~----~a~~~~~i~~-lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~ 1179 (1236)
||.- .-+++++++. +|+|+| |.+|||||||| |||++++|+||| ||+||+.+++.|+.
T Consensus 172 ~ni~~~~~~~~~~~~~i~~~L~~gld------g~~LSgGqkQR---ARAll~~p~iLl----Ts~LD~~~~~~i~~---- 234 (305)
T 2v9p_A 172 TRAALVDDATHACWRYFDTYLRNALD------GYPVSIDRKHK---AAVQIKAPPLLV----TSNIDVQAEDRYLY---- 234 (305)
T ss_dssp CSCEEEEEECHHHHHHHHHTTTGGGG------TCCEECCCSSC---CCCEECCCCEEE----EESSCSTTCGGGGG----
T ss_pred HhhccCccccHHHHHHHHHHhHccCC------ccCcCHHHHHH---HHHHhCCCCEEE----ECCCCHHHHHHHHH----
Confidence 8740 1145678888 999998 67899999999 999999999999 99999999998862
Q ss_pred HcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1180 VMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1180 ~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
+|||+++++.||+| ||++|+|++.|+|++| ++.|++++..+
T Consensus 235 ---------ltH~~~~~~~aD~i-vl~~G~iv~~g~~~el----~~~y~~l~~~~ 275 (305)
T 2v9p_A 235 ---------LHSRVQTFRFEQPC-TDESGEQPFNITDADW----KSFFVRLWGRL 275 (305)
T ss_dssp ---------GTTTEEEEECCCCC-CCC---CCCCCCHHHH----HHHHHHSTTTT
T ss_pred ---------HhCCHHHHHhCCEE-EEeCCEEEEeCCHHHH----HHHHHHHHHHc
Confidence 39999999999999 9999999999999999 47899998754
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=352.49 Aligned_cols=199 Identities=23% Similarity=0.297 Sum_probs=166.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|.+ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+ +.+|
T Consensus 287 ~l~~~~l~~~~~~----~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~-------------~~~i 349 (538)
T 1yqt_A 287 LVTYPRLVKDYGS----FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW-------------DLTV 349 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC-------------CCCE
T ss_pred EEEEeeEEEEECC----EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE-------------CceE
Confidence 5899999999952 3699999999999999999999999999999999999999999975 2369
Q ss_pred EEEccCCCC-CchhHHHHHhcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYG-KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+||+|++.+ +..||.||+... .+. ...+.+.++ +..+ |+.........+||||||||++|||||+.
T Consensus 350 ~~v~Q~~~~~~~~tv~~~~~~~~~~~~~~~~~~~~~---------l~~~--~l~~~~~~~~~~LSGGe~qrv~lAraL~~ 418 (538)
T 1yqt_A 350 AYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTEL---------LKPL--GIIDLYDREVNELSGGELQRVAIAATLLR 418 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHTCHHHHHHT---------TTTT--TCGGGTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCCcCCCCCcHHHHHHhhhccCCCHHHHHHHH---------HHHc--CChhhhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999876 566999998753 110 112222222 2222 45445566677899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~ 610 (1236)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 419 ~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~g~~~~~~~ 493 (538)
T 1yqt_A 419 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRALPPMGMRE 493 (538)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 78889999988864
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-34 Score=354.90 Aligned_cols=199 Identities=23% Similarity=0.293 Sum_probs=166.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.++ .+|
T Consensus 357 ~l~~~~l~~~~~~----~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~-------------~~i 419 (607)
T 3bk7_A 357 LVEYPRLVKDYGS----FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEWD-------------LTV 419 (607)
T ss_dssp EEEECCEEEECSS----CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCCC-------------CCE
T ss_pred EEEEeceEEEecc----eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEEe-------------eEE
Confidence 5899999999952 36999999999999999999999999999999999999999999762 379
Q ss_pred EEEccCCCC-CchhHHHHHhcC-CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYG-KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g-~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||+||++.+ ++.||.||+... .+. ...+.+.++++.. |++........+||||||||++|||||++
T Consensus 420 ~~v~Q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGe~QRv~iAraL~~ 488 (607)
T 3bk7_A 420 AYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKPL-----------GIIDLYDRNVEDLSGGELQRVAIAATLLR 488 (607)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHHHHHHHCHHHHHHTHHHH-----------TCTTTTTSBGGGCCHHHHHHHHHHHHHTS
T ss_pred EEEecCccCCCCCcHHHHHHhhhccCCCHHHHHHHHHHHc-----------CCchHhcCChhhCCHHHHHHHHHHHHHHh
Confidence 999999866 567999998753 110 0122233333333 34334455566899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCcccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLE 610 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~ 610 (1236)
+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++.
T Consensus 489 ~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~g~p~~~~~ 563 (607)
T 3bk7_A 489 DADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRALPPMGMRE 563 (607)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHHH
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEecCCHHHHHh
Confidence 999999999999999999999999999874 48999999999999875 999999986 88888999988865
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=8.5e-34 Score=345.60 Aligned_cols=199 Identities=21% Similarity=0.239 Sum_probs=164.8
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.++++|++++|++ ..|+++||+|++||++||+||||||||||+++|+|+++|++|+|.+++ ..+
T Consensus 269 ~l~~~~l~~~~~~----~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------~~i 332 (538)
T 3ozx_A 269 KMKWTKIIKKLGD----FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------QIL 332 (538)
T ss_dssp EEEECCEEEEETT----EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC------------CCE
T ss_pred eEEEcceEEEECC----EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC------------eee
Confidence 5899999999952 468888999999999999999999999999999999999999999875 369
Q ss_pred EEEccCCCC-CchhHHHHHhcCCCCC---CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 464 GLVSQEPVL-LSSSIRDNIAYGKTHA---TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 464 ~~v~Q~~~l-~~~ti~~ni~~g~~~~---~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|++|++.. +..||+||+.+..... ..+.+.++++.. |+.........+||||||||++|||||+
T Consensus 333 ~~~~q~~~~~~~~tv~~~l~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~LSGGq~QRv~iAraL~ 401 (538)
T 3ozx_A 333 SYKPQRIFPNYDGTVQQYLENASKDALSTSSWFFEEVTKRL-----------NLHRLLESNVNDLSGGELQKLYIAATLA 401 (538)
T ss_dssp EEECSSCCCCCSSBHHHHHHHHCSSTTCTTSHHHHHTTTTT-----------TGGGCTTSBGGGCCHHHHHHHHHHHHHH
T ss_pred EeechhcccccCCCHHHHHHHhhhhccchhHHHHHHHHHHc-----------CCHHHhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999764 4679999998743221 122333333333 4444455566789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELL 609 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~ 609 (1236)
++|+||||||||++||+.+...+.+.|+++. .++|+|+|||+++.+.. ||||++|++ |.+...+++.++.
T Consensus 402 ~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~~~~~~~~~~~~~~~~ 476 (538)
T 3ozx_A 402 KEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKGEPEKAGLATSPVTLK 476 (538)
T ss_dssp SCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEECCCEEHH
T ss_pred cCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceeccCCChHHHH
Confidence 9999999999999999999999999999885 37899999999999876 999999986 5566666666553
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-33 Score=355.96 Aligned_cols=205 Identities=23% Similarity=0.399 Sum_probs=155.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
-|+++|++|+|++. ++++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|+++|. .+|
T Consensus 671 mL~v~nLs~~Y~g~-~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~-----------~~I 738 (986)
T 2iw3_A 671 IVKVTNMEFQYPGT-SKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN-----------CRI 738 (986)
T ss_dssp EEEEEEEEECCTTC-SSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT-----------CCE
T ss_pred eEEEEeeEEEeCCC-CceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc-----------cce
Confidence 39999999999742 357999999999999999999999999999999999999999999999862 258
Q ss_pred EEEccCCCC-----CchhHHHHHhc-------------------------------------------------------
Q 040099 464 GLVSQEPVL-----LSSSIRDNIAY------------------------------------------------------- 483 (1236)
Q Consensus 464 ~~v~Q~~~l-----~~~ti~~ni~~------------------------------------------------------- 483 (1236)
+|++|++.. .+.|+++++.+
T Consensus 739 ~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e 818 (986)
T 2iw3_A 739 AYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYE 818 (986)
T ss_dssp EEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEE
T ss_pred EeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhcccchhh
Confidence 888887531 13355665532
Q ss_pred -----------CCC---CCC--------HHHHH-------------HHHH--------HhccHHHHHhCCCCcccc--cc
Q 040099 484 -----------GKT---HAT--------KEEIQ-------------AAAE--------AANASHFIKNLPQGLDTN--VG 518 (1236)
Q Consensus 484 -----------g~~---~~~--------~~~~~-------------~~~~--------~~~~~~~i~~l~~g~~t~--~g 518 (1236)
+.. ..+ .+++. ++.. ...+.+.+..+ |++.. ..
T Consensus 819 ~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~l--GL~~~~~~~ 896 (986)
T 2iw3_A 819 CSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSML--GLDPEIVSH 896 (986)
T ss_dssp EEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHT--TCCHHHHHH
T ss_pred hhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHc--CCCchhhcC
Confidence 100 000 00000 0000 01123344444 55543 24
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhh-cCeEEEEECC
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRN-ANIIAVIQQG 597 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~-ad~i~vl~~G 597 (1236)
....+||||||||++|||||+.+|++|||||||++||+.+...+.+.|+++ ++|+|+|||+++.+.. ||+|++|++|
T Consensus 897 ~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrVivL~~G 974 (986)
T 2iw3_A 897 SRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWAVKDG 974 (986)
T ss_dssp SCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEECCBTT
T ss_pred CCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEEEECC
Confidence 556789999999999999999999999999999999999999999999876 5799999999999865 9999999999
Q ss_pred EEEEEeC
Q 040099 598 KIVEKGT 604 (1236)
Q Consensus 598 ~i~~~g~ 604 (1236)
++++.|+
T Consensus 975 ~Iv~~G~ 981 (986)
T 2iw3_A 975 RMTPSGH 981 (986)
T ss_dssp BCCC---
T ss_pred EEEEeCC
Confidence 9987764
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.98 E-value=1.1e-32 Score=339.07 Aligned_cols=198 Identities=24% Similarity=0.370 Sum_probs=164.2
Q ss_pred EeEEEECCCCCCCccccceeEEecCC-----cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNG-----TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g-----~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
++++|+|+. ...+++|+||++++| |++||+||||||||||+++|+|+++|++|+. +. +..
T Consensus 350 ~~~~~~y~~--~~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~~-------~~~ 414 (608)
T 3j16_B 350 ASRAFSYPS--LKKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------IP-------KLN 414 (608)
T ss_dssp SSSCCEECC--EEEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------CC-------SCC
T ss_pred cceeEEecC--cccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------cc-------CCc
Confidence 677889973 245899999999999 7899999999999999999999999999973 11 346
Q ss_pred eEEEccCCC-CCchhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEPV-LLSSSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~~-l~~~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
++|++|++. .|+.|+++|+..... ....+...++++..++ .........+||||||||++|||||+
T Consensus 415 i~~~~q~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~l~~l~l-----------~~~~~~~~~~LSGGqkQRv~iAraL~ 483 (608)
T 3j16_B 415 VSMKPQKIAPKFPGTVRQLFFKKIRGQFLNPQFQTDVVKPLRI-----------DDIIDQEVQHLSGGELQRVAIVLALG 483 (608)
T ss_dssp EEEECSSCCCCCCSBHHHHHHHHCSSTTTSHHHHHHTHHHHTS-----------TTTSSSBSSSCCHHHHHHHHHHHHTT
T ss_pred EEEecccccccCCccHHHHHHHHhhcccccHHHHHHHHHHcCC-----------hhhhcCChhhCCHHHHHHHHHHHHHH
Confidence 999999975 467899999864321 1233444444444443 33445566789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEEC--CEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQ--GKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~--G~i~~~g~~~~l~~~ 611 (1236)
.+|+||||||||++||+.+...+.+.|+++. .|+|+|+|||+++.+.. ||||++|++ |+++..|++++++..
T Consensus 484 ~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~ 560 (608)
T 3j16_B 484 IPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHARAPESLLTG 560 (608)
T ss_dssp SCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECCCCEEHHHH
T ss_pred hCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecCChHHHhhh
Confidence 9999999999999999999999999999874 48999999999999875 999999996 899999999999864
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-31 Score=336.93 Aligned_cols=199 Identities=25% Similarity=0.380 Sum_probs=138.4
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHH---------------------HHHhcccCCC-------CcEEEECCeec
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVI---------------------SLLQRFYDPS-------SGHITLDGVEI 1077 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~---------------------~lL~r~~~~~-------~G~I~idG~di 1077 (1236)
..+|+||||+|++||++||+||||||||||+ +++.++..|+ .|.|.++|.++
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 3589999999999999999999999999998 8889999998 55666777665
Q ss_pred ccCChHHHhcceEEEcCCCCCC--------------------hhhHHHHHHHHhhh--------------chHHHh---h
Q 040099 1078 QKLQVKWLRQQMGVVSQEPVLF--------------------SDTIRANIAEMANA--------------NGFISG---L 1120 (1236)
Q Consensus 1078 ~~i~~~~lR~~i~~V~Qdp~LF--------------------~gTIreNL~~~a~~--------------~~~i~~---l 1120 (1236)
... .|+.+++|+|.+.++ ..|++||+.-.... .+.... +
T Consensus 111 ~~~----~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 186 (670)
T 3ux8_A 111 SRN----PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDRLGFL 186 (670)
T ss_dssp --------CCBHHHHTTCC-------------------------CC--------------------------CHHHHHHH
T ss_pred hcc----chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHHHHHH
Confidence 432 355677777765432 34888987421100 000000 1
Q ss_pred h-hchhhh-hcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchh
Q 040099 1121 Q-EGYDTL-VGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLST 1195 (1236)
Q Consensus 1121 p-~Gldt~-vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~t 1195 (1236)
. -|++.. ......+||||||||++|||||+.+|+ +||||||||+||+.+...+.+.|+++. +++|+|+|||+++.
T Consensus 187 ~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~ 266 (670)
T 3ux8_A 187 QNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDT 266 (670)
T ss_dssp HHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECCCHHH
T ss_pred HHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH
Confidence 1 022211 234456899999999999999999988 999999999999999999999998864 57899999999999
Q ss_pred hhhcCEEEEE------eCCEEEEecChhHHhhccCcccH
Q 040099 1196 IKNAHLIAVV------SQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1196 i~~aD~I~Vl------~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+..||+|++| ++|++++.|+++++.+.+...+.
T Consensus 267 ~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~~~~~~~~~ 305 (670)
T 3ux8_A 267 MLAADYLIDIGPGAGIHGGEVVAAGTPEEVMNDPNSLTG 305 (670)
T ss_dssp HHHCSEEEEECSSSGGGCCSEEEEECHHHHHTCTTCHHH
T ss_pred HhhCCEEEEecccccccCCEEEEecCHHHHhcCchhHHH
Confidence 8889999999 89999999999999886443333
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.97 E-value=1.8e-30 Score=329.83 Aligned_cols=207 Identities=29% Similarity=0.470 Sum_probs=154.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHH---------HHHHcCCCCC------Cc------EEEECCeecCCCCH---
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVI---------SLIQRFYDPQ------AG------EVLIDGVNLKEFQL--- 456 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~---------~ll~~~~~~~------~G------~i~~~g~~~~~~~~--- 456 (1236)
..|+||||+|++|++++|+||||||||||+ +++.+...+. +| .+.++..++...+.
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred ccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccceEeeccccccccccccc
Confidence 479999999999999999999999999997 4454444333 33 35555555432110
Q ss_pred -------HHHh-------------------------------cceEEEccCCCCCc------------------------
Q 040099 457 -------KWIR-------------------------------EKIGLVSQEPVLLS------------------------ 474 (1236)
Q Consensus 457 -------~~~r-------------------------------~~i~~v~Q~~~l~~------------------------ 474 (1236)
..+| +..|++.|+..+++
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred cchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeeeccCcceeecccccccccchhhhhhhhc
Confidence 0111 23577777765543
Q ss_pred ---------hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCC--
Q 040099 475 ---------SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDP-- 542 (1236)
Q Consensus 475 ---------~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p-- 542 (1236)
.|+.|++.|.......++..+++ ..+ |+. ..+|+.+.+|||||||||+|||||+++|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~~~~~~~~~~~L---------~~v--GL~~~~lgq~~~~LSGGErQRV~LAraL~~~p~~ 826 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKNIPSIKRTLQVL---------HDV--GLGYVKLGQPATTLSGGEAQRIKLASELRKRDTG 826 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTTCHHHHHHHHHH---------HHT--TGGGSBTTCCSTTCCHHHHHHHHHHHHHTSCCCS
T ss_pred cCCHHHHhhCCHHHHHHHHhcchhHHHHHHHH---------HHc--CCchhhccCCccCCCHHHHHHHHHHHHHhhCCCC
Confidence 35666666543221122233333 333 443 3478889999999999999999999876
Q ss_pred -CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEE------ECCEEEEEeCcccccccccc
Q 040099 543 -RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVI------QQGKIVEKGTHSELLENPYG 614 (1236)
Q Consensus 543 -~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl------~~G~i~~~g~~~~l~~~~~~ 614 (1236)
+||||||||++||+.+++.+++.|+++. +|+|+|+|+|+++.++.||+|++| ++|+|+++|+|+++++++ +
T Consensus 827 p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpeel~~~~-~ 905 (916)
T 3pih_A 827 RTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIKNADHIIDLGPEGGKEGGYIVATGTPEEIAKNP-H 905 (916)
T ss_dssp SEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEEESSSGGGCCEEEEEESHHHHHSCT-T
T ss_pred CCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEecCCCCCCCCEEEEEcCHHHHHhCC-c
Confidence 7999999999999999999999999885 489999999999999999999999 899999999999999874 5
Q ss_pred hhhhh
Q 040099 615 AYNRL 619 (1236)
Q Consensus 615 ~y~~~ 619 (1236)
.|...
T Consensus 906 syt~~ 910 (916)
T 3pih_A 906 SYTGR 910 (916)
T ss_dssp CHHHH
T ss_pred hHHHH
Confidence 55443
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=5.8e-29 Score=313.49 Aligned_cols=213 Identities=25% Similarity=0.413 Sum_probs=157.4
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHH-HHcCC-------CC---------------
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISL-IQRFY-------DP--------------- 439 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~l-l~~~~-------~~--------------- 439 (1236)
..|+++|+++ .+|+||||+|++||++||+|+||||||||++. |.|.. .|
T Consensus 501 ~~L~v~~l~~--------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~~ 572 (842)
T 2vf7_A 501 GWLELNGVTR--------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTAG 572 (842)
T ss_dssp CEEEEEEEEE--------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------C
T ss_pred ceEEEEeeee--------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCccccccccccccccc
Confidence 4599999986 16999999999999999999999999999996 66443 22
Q ss_pred ---CCc-------EEEECCeecCCCCH----------HHHhcce---------EEEccC---------------------
Q 040099 440 ---QAG-------EVLIDGVNLKEFQL----------KWIREKI---------GLVSQE--------------------- 469 (1236)
Q Consensus 440 ---~~G-------~i~~~g~~~~~~~~----------~~~r~~i---------~~v~Q~--------------------- 469 (1236)
.+| .|.+||.++...+. +.+|+.+ ||.++.
T Consensus 573 ~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~~ 652 (842)
T 2vf7_A 573 SARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVMV 652 (842)
T ss_dssp CCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEEE
T ss_pred cccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccch
Confidence 466 68899988754321 2333322 232221
Q ss_pred -CCCC-------------------------chhHHHHHhcCCCC-----CCHHHHHHHHHHhccHHHHHhCCCCccc-cc
Q 040099 470 -PVLL-------------------------SSSIRDNIAYGKTH-----ATKEEIQAAAEAANASHFIKNLPQGLDT-NV 517 (1236)
Q Consensus 470 -~~l~-------------------------~~ti~~ni~~g~~~-----~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~ 517 (1236)
-.++ ..||.||+.+...+ ....+.. .+.+.+..+ |+.. ..
T Consensus 653 ~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~~~~~------~~~~~L~~~--gL~~~~l 724 (842)
T 2vf7_A 653 ELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADESAIF------RALDTLREV--GLGYLRL 724 (842)
T ss_dssp TTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTSHHHH------HHHHHHHHT--TCTTSBT
T ss_pred hhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcchHHH------HHHHHHHHc--CCCcccc
Confidence 1111 12555555432100 0001111 123445555 5555 46
Q ss_pred cCCCCCCChHHHHHHHHHHHhcCC---CCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEE
Q 040099 518 GEHGIQLSGGQKQRVAIARAMIKD---PRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAV 593 (1236)
Q Consensus 518 g~~g~~LSgGqkqRiaiARal~~~---p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~v 593 (1236)
+....+|||||||||+|||+|+++ |+||||||||++||+.+.+.+.+.|+++. +|+|+|+|||+++.+..||+|++
T Consensus 725 ~~~~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i~~aDrii~ 804 (842)
T 2vf7_A 725 GQPATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVVAASDWVLD 804 (842)
T ss_dssp TCCGGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEE
T ss_pred cCCcccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEE
Confidence 788889999999999999999996 69999999999999999999999999884 58999999999999978999999
Q ss_pred E------ECCEEEEEeCccccccc
Q 040099 594 I------QQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 594 l------~~G~i~~~g~~~~l~~~ 611 (1236)
| ++|+|+++|+++++.+.
T Consensus 805 L~p~~g~~~G~Iv~~g~~~el~~~ 828 (842)
T 2vf7_A 805 IGPGAGEDGGRLVAQGTPAEVAQA 828 (842)
T ss_dssp ECSSSGGGCCSEEEEECHHHHTTC
T ss_pred ECCCCCCCCCEEEEEcCHHHHHhC
Confidence 9 69999999999999876
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.95 E-value=1e-28 Score=310.27 Aligned_cols=209 Identities=25% Similarity=0.388 Sum_probs=157.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH-c----CC---CCCCc-------------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-R----FY---DPQAG------------- 442 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~-~----~~---~~~~G------------- 442 (1236)
.++++|++. .+|+||||+|++||++||+|+||||||||++.|+ | .+ .+..|
T Consensus 629 ~L~v~~l~~--------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 629 WLEVVGARE--------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp EEEEEEECS--------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred EEEEecCcc--------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 588888852 3699999999999999999999999999999854 2 11 12333
Q ss_pred EEEECCeecCCCC---HH-------HH---------hcceEEEccCCCC---------------------C---------
Q 040099 443 EVLIDGVNLKEFQ---LK-------WI---------REKIGLVSQEPVL---------------------L--------- 473 (1236)
Q Consensus 443 ~i~~~g~~~~~~~---~~-------~~---------r~~i~~v~Q~~~l---------------------~--------- 473 (1236)
.|.+||.++...+ +. .+ .+.+||++|...+ |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 4788888874321 11 11 1346888885321 0
Q ss_pred -------------------------chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccCCCCCCChH
Q 040099 474 -------------------------SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT-NVGEHGIQLSGG 527 (1236)
Q Consensus 474 -------------------------~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgG 527 (1236)
..|+.||+.+.... . ++.+ ..+.+..+ |+.. ..+....+||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~~~--~-~~~~------~~~~L~~~--gL~~~~l~~~~~~LSGG 849 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFASI--P-KIKR------KLETLYDV--GLGYMKLGQPATTLSGG 849 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTCSC--H-HHHH------HHHHHHHT--TCSSSBTTCCGGGCCHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHhcc--h-hHHH------HHHHHHHc--CCCcccccCchhhCCHH
Confidence 12556666553221 1 1111 12344555 6665 578888899999
Q ss_pred HHHHHHHHHHhcCCC---CEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEEEE------ECC
Q 040099 528 QKQRVAIARAMIKDP---RILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIAVI------QQG 597 (1236)
Q Consensus 528 qkqRiaiARal~~~p---~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~vl------~~G 597 (1236)
|||||+|||||+++| ++|||||||++||+.+...+.+.|+++. +|+|+|+|||+++.+..||+|++| ++|
T Consensus 850 ekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i~~aDrIivL~p~gG~~~G 929 (972)
T 2r6f_A 850 EAQRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVIKTADYIIDLGPEGGDRGG 929 (972)
T ss_dssp HHHHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHTTCSEEEEECSSSTTSCC
T ss_pred HHHHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHhCCEEEEEcCCCCCCCC
Confidence 999999999999875 9999999999999999999999999885 589999999999999889999999 789
Q ss_pred EEEEEeCccccccc
Q 040099 598 KIVEKGTHSELLEN 611 (1236)
Q Consensus 598 ~i~~~g~~~~l~~~ 611 (1236)
+|++.|+++++...
T Consensus 930 ~Iv~~g~~~el~~~ 943 (972)
T 2r6f_A 930 QIVAVGTPEEVAEV 943 (972)
T ss_dssp SEEEEESHHHHHTC
T ss_pred EEEEecCHHHHHhC
Confidence 99999999999876
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.1e-28 Score=295.48 Aligned_cols=201 Identities=20% Similarity=0.295 Sum_probs=150.7
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC--------------------------------------CCCcE
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD--------------------------------------PQAGE 443 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~--------------------------------------~~~G~ 443 (1236)
+|++++|++++| +++|+||||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 799999999999 999999999999999999966653 45789
Q ss_pred EEECCeecCCCCHHHHhcc-eEEEccCCCCCchhHHHHHhcCCCCCCH--------------------------------
Q 040099 444 VLIDGVNLKEFQLKWIREK-IGLVSQEPVLLSSSIRDNIAYGKTHATK-------------------------------- 490 (1236)
Q Consensus 444 i~~~g~~~~~~~~~~~r~~-i~~v~Q~~~l~~~ti~~ni~~g~~~~~~-------------------------------- 490 (1236)
+++||.+++..+...+.+. +++++|++.++..+..++..+-......
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999986666777666 8999999877655544443332111100
Q ss_pred ------------HHHHHHHHH-------------hccHHHHHhC--CC----------------Cccc---cccCCCCC-
Q 040099 491 ------------EEIQAAAEA-------------ANASHFIKNL--PQ----------------GLDT---NVGEHGIQ- 523 (1236)
Q Consensus 491 ------------~~~~~~~~~-------------~~~~~~i~~l--~~----------------g~~t---~~g~~g~~- 523 (1236)
+++.+.+.. ..+.+.+..+ |+ |.+. .++.++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 000000000 0111222222 11 2222 34444433
Q ss_pred -------CChHHHHHHHHHHHhcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 524 -------LSGGQKQRVAIARAMIKDP--RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 524 -------LSgGqkqRiaiARal~~~p--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
||||||||++|||+|+.+| ++|||||||++||+.+...+.+.|+++.+++|+|+|||+++.+..||++++|
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 8999999999999999999 9999999999999999999999999998889999999999988889999999
Q ss_pred ----ECCEEEEEe
Q 040099 595 ----QQGKIVEKG 603 (1236)
Q Consensus 595 ----~~G~i~~~g 603 (1236)
++|+++...
T Consensus 369 ~k~~~~G~~~~~~ 381 (415)
T 4aby_A 369 EKQVEDGRTVSHV 381 (415)
T ss_dssp EEEEETTEEEEEE
T ss_pred EEeccCCceEEEE
Confidence 999987653
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.95 E-value=5.6e-28 Score=289.20 Aligned_cols=185 Identities=22% Similarity=0.251 Sum_probs=146.9
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC--------------------------------------CCCcE
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD--------------------------------------PSSGH 1069 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--------------------------------------~~~G~ 1069 (1236)
+|+++||++++| +++|+|+||||||||+++|.++.. +.+|+
T Consensus 50 ~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~~ 128 (415)
T 4aby_A 50 TITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRGA 128 (415)
T ss_dssp TEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCEE
T ss_pred ceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCceE
Confidence 699999999999 999999999999999999966553 45789
Q ss_pred EEECCeecccCChHHHhcc-eEEEcCCCCCChhhHHHHHH---HHhh---------------------------------
Q 040099 1070 ITLDGVEIQKLQVKWLRQQ-MGVVSQEPVLFSDTIRANIA---EMAN--------------------------------- 1112 (1236)
Q Consensus 1070 I~idG~di~~i~~~~lR~~-i~~V~Qdp~LF~gTIreNL~---~~a~--------------------------------- 1112 (1236)
+++||.+++..++..+++. +++++|++.++-.+..++.. ..+.
T Consensus 129 i~ing~~~~~~~~~~~~~~~i~~~~q~~~l~l~~~~~~r~~ld~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~~~~~~~~ 208 (415)
T 4aby_A 129 ARLSGEVVSVRELQEWAQGRLTIHWQHSAVSLLSPANQRGLLDRRVTKEAQAYAAAHAAWREAVSRLERLQASESSKHPT 208 (415)
T ss_dssp EEETTEEECHHHHHHHHTTTEEEETTTCTTTTSSHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHC----------
T ss_pred EEECCEECCHHHHHHHHhhceEEecCcccccccCHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHHhhhhhhcCc
Confidence 9999999987777888777 89999999877555443321 0000
Q ss_pred ------------------------------------hchHHHhh--h----------------hchhh---hhcCCCCC-
Q 040099 1113 ------------------------------------ANGFISGL--Q----------------EGYDT---LVGERGVQ- 1134 (1236)
Q Consensus 1113 ------------------------------------~~~~i~~l--p----------------~Gldt---~vge~G~~- 1134 (1236)
+.+.+..+ | .|++. .+..++..
T Consensus 209 ~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~ 288 (415)
T 4aby_A 209 SLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRFSANPGEE 288 (415)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEEESSSSCC
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEEEcCCCCc
Confidence 00001111 1 11111 23334333
Q ss_pred -------CChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1135 -------LSGGQKQRVAIARAIVKEP--KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1135 -------LSGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
||||||||++|||+|+.+| +||||||||++||+.+...+.+.|+++.+++|||+|||+++.+..||+|+||
T Consensus 289 ~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~~~~d~i~~l 368 (415)
T 4aby_A 289 LGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKV 368 (415)
T ss_dssp CCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEE
T ss_pred ccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHhhcCeEEEE
Confidence 7999999999999999999 9999999999999999999999999988889999999999998889999999
Q ss_pred ----eCCEEEEe
Q 040099 1206 ----SQGMIVEK 1213 (1236)
Q Consensus 1206 ----~~G~Ive~ 1213 (1236)
++|+++..
T Consensus 369 ~k~~~~G~~~~~ 380 (415)
T 4aby_A 369 EKQVEDGRTVSH 380 (415)
T ss_dssp EEEEETTEEEEE
T ss_pred EEeccCCceEEE
Confidence 99998755
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=8.4e-32 Score=321.54 Aligned_cols=194 Identities=14% Similarity=0.132 Sum_probs=151.9
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-E-EEECCeecCCCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-E-VLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~-i~~~g~~~~~~~~~~~r~ 461 (1236)
-++++||+|+| .++||++++|++++|+||||||||||+|+|+|++.|++| + |++|| + .|+
T Consensus 118 mi~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~ 179 (460)
T 2npi_A 118 MKYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQ 179 (460)
T ss_dssp HHHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTS
T ss_pred hhhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccC
Confidence 35566666666 279999999999999999999999999999999999999 9 99998 1 367
Q ss_pred ceEEEccCCCCCc----hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 462 KIGLVSQEPVLLS----SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~----~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
.++||||++.+|. .|++||+ ++........ ....+.+.+..+ |+++... +.+||||||||++||||
T Consensus 180 ~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~--gl~~~~~--~~~LSgGq~qrlalAra 249 (460)
T 2npi_A 180 PIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNF--GLERINE--NKDLYLECISQLGQVVG 249 (460)
T ss_dssp CSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCC--CSSSGGG--CHHHHHHHHHHHHHHHH
T ss_pred Ceeeeccchhhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHh--CCCcccc--hhhhhHHHHHHHHHHHH
Confidence 8999999986543 4899999 7643100000 000111112222 5555443 67899999999999999
Q ss_pred --hcCCCCE----EEEeC-cCCCCCHHHHHHHHHHHHHHccCceEEEEecCch------hHh-hcCe-----EEEEE-CC
Q 040099 538 --MIKDPRI----LLLDE-ATSALDSESGRMVQEALDRVMINRTTVIVSHRLS------LIR-NANI-----IAVIQ-QG 597 (1236)
Q Consensus 538 --l~~~p~i----lilDE-~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~------~~~-~ad~-----i~vl~-~G 597 (1236)
|+.+|++ ||||| ||++||+. ...+.+.++++ ++|+|+|+|+.+ .+. .||+ |++|+ +|
T Consensus 250 ~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G 326 (460)
T 2npi_A 250 QRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLD 326 (460)
T ss_dssp HHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCT
T ss_pred HHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCC
Confidence 9999999 99999 99999999 66677776664 789999999987 554 4999 99999 99
Q ss_pred EEEEEeCccccc
Q 040099 598 KIVEKGTHSELL 609 (1236)
Q Consensus 598 ~i~~~g~~~~l~ 609 (1236)
+++ .|+++++.
T Consensus 327 ~iv-~g~~~~~~ 337 (460)
T 2npi_A 327 GVS-AVDDVYKR 337 (460)
T ss_dssp TCC-CCCHHHHH
T ss_pred cEE-ECCHHHHh
Confidence 999 99998874
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.95 E-value=4.1e-31 Score=315.56 Aligned_cols=186 Identities=11% Similarity=0.071 Sum_probs=148.7
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-E-EEECCeecccCChHHHhcc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-H-ITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~-I~idG~di~~i~~~~lR~~ 1088 (1236)
++++||+++| .++||++++||+++|+||||||||||+++|+|++.|++| + |++|| | .|+.
T Consensus 119 i~~~nl~~~y---------~~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg-~--------~~~~ 180 (460)
T 2npi_A 119 KYIYNLHFML---------EKIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINL-D--------PQQP 180 (460)
T ss_dssp HHHHHHHHHH---------HHHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEEC-C--------TTSC
T ss_pred hhhhhhhehh---------hcCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcC-C--------ccCC
Confidence 5555555555 379999999999999999999999999999999999999 9 99998 2 3788
Q ss_pred eEEEcCCCCCCh----hhHHHHHHHHhhh------chHHHhhh--hchhhhhcCCCCCCChhHHHHHHHHHH--HccCCC
Q 040099 1089 MGVVSQEPVLFS----DTIRANIAEMANA------NGFISGLQ--EGYDTLVGERGVQLSGGQKQRVAIARA--IVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~----gTIreNL~~~a~~------~~~i~~lp--~Gldt~vge~G~~LSGGQrQRlaLARA--Llr~p~ 1154 (1236)
+++|||++.+|. .|++||+. .... .+.+..+- -|++.... ..+||||||||++|||| |+.+|+
T Consensus 181 i~~vpq~~~l~~~~~~~tv~eni~-~~~~~~~~~~~~~~~~ll~~~gl~~~~~--~~~LSgGq~qrlalAra~rL~~~p~ 257 (460)
T 2npi_A 181 IFTVPGCISATPISDILDAQLPTW-GQSLTSGATLLHNKQPMVKNFGLERINE--NKDLYLECISQLGQVVGQRLHLDPQ 257 (460)
T ss_dssp SSSCSSCCEEEECCSCCCTTCTTC-SCBCBSSCCSSCCBCCEECCCCSSSGGG--CHHHHHHHHHHHHHHHHHHHHHCHH
T ss_pred eeeeccchhhcccccccchhhhhc-ccccccCcchHHHHHHHHHHhCCCcccc--hhhhhHHHHHHHHHHHHHHhccCcc
Confidence 999999986543 48888871 1100 00010000 14444433 67899999999999999 999999
Q ss_pred E----EEEec-CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch------hhh-hcCE-----EEEEe-CCEEEEecCh
Q 040099 1155 I----LLLDE-ATSALDIESERVVQDALDQVMVDRTTLVVAHRLS------TIK-NAHL-----IAVVS-QGMIVEKGSH 1216 (1236)
Q Consensus 1155 I----LlLDE-aTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~------ti~-~aD~-----I~Vl~-~G~Ive~Gt~ 1216 (1236)
| ||||| ||++||+. ...+.+.+++. +.|+|+|+|+.+ .++ .||+ |++|+ +|+|+ .|++
T Consensus 258 i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~l~k~G~iv-~g~~ 333 (460)
T 2npi_A 258 VRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFFIPKLDGVS-AVDD 333 (460)
T ss_dssp HHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEEECCCTTCC-CCCH
T ss_pred cCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEEEeCCCcEE-ECCH
Confidence 9 99999 99999999 77777777764 789999999988 554 4999 99999 99999 9999
Q ss_pred hHHhh
Q 040099 1217 ESLIS 1221 (1236)
Q Consensus 1217 ~eLl~ 1221 (1236)
+++.+
T Consensus 334 ~~~~~ 338 (460)
T 2npi_A 334 VYKRS 338 (460)
T ss_dssp HHHHH
T ss_pred HHHhh
Confidence 98854
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.93 E-value=7e-26 Score=260.86 Aligned_cols=194 Identities=19% Similarity=0.267 Sum_probs=141.1
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----------------------------------------------
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY----------------------------------------------- 437 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~----------------------------------------------- 437 (1236)
++++++.+| +++|+||||||||||+++|..+.
T Consensus 17 ~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~r 95 (322)
T 1e69_A 17 PSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVAR 95 (322)
T ss_dssp CEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEEE
T ss_pred CeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEEE
Confidence 578899999 99999999999999999998432
Q ss_pred ---CCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCC---------------CHHHHHHHHH
Q 040099 438 ---DPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHA---------------TKEEIQAAAE 498 (1236)
Q Consensus 438 ---~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~---------------~~~~~~~~~~ 498 (1236)
.+.+|.+++||.+++..+...+...+++.+|+..++ .+++.+|+....... +.+++.+...
T Consensus 96 ~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~~ 175 (322)
T 1e69_A 96 ELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESFN 175 (322)
T ss_dssp EEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHHH
T ss_pred EEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Confidence 344678999999876555566667889999988765 789999987532100 0011222111
Q ss_pred Hh------------cc-HHHHHhCCCCcccccc------CCCCCCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCC
Q 040099 499 AA------------NA-SHFIKNLPQGLDTNVG------EHGIQLSGGQKQRVAIARAMI----KDPRILLLDEATSALD 555 (1236)
Q Consensus 499 ~~------------~~-~~~i~~l~~g~~t~~g------~~g~~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD 555 (1236)
.. .+ ......++.|+++.++ .....||||||||++|||||+ .+|++|||||||++||
T Consensus 176 ~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD 255 (322)
T 1e69_A 176 RFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLD 255 (322)
T ss_dssp HHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCC
T ss_pred HHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCC
Confidence 10 00 0011234556665433 234689999999999999996 7899999999999999
Q ss_pred HHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeE--EEEECCEE
Q 040099 556 SESGRMVQEALDRVMINRTTVIVSHRLSLIRNANII--AVIQQGKI 599 (1236)
Q Consensus 556 ~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i--~vl~~G~i 599 (1236)
+.+...+.+.|+++.+++|+|+|||+++.+..||++ ++|++|+.
T Consensus 256 ~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s 301 (322)
T 1e69_A 256 DYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVS 301 (322)
T ss_dssp HHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCE
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEE
Confidence 999999999999987788999999998877889987 88888864
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.92 E-value=1.5e-25 Score=258.22 Aligned_cols=189 Identities=21% Similarity=0.278 Sum_probs=142.4
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcc-----------------------------------------------
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRF----------------------------------------------- 1062 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~----------------------------------------------- 1062 (1236)
+++++++.+| .++|+|+||||||||+.+|..+
T Consensus 16 ~~~~l~~~~g-~~~i~G~NGsGKS~ll~ai~~llg~~~~~s~r~~~~~~li~~g~~~~~~~~~~~v~~~f~~~~~~~~i~ 94 (322)
T 1e69_A 16 RPSLIGFSDR-VTAIVGPNGSGKSNIIDAIKWVFGEQSKKELRASEKFDMIFAGSENLPPAGSAYVELVFEENGEEITVA 94 (322)
T ss_dssp SCEEEECCSS-EEEEECCTTTCSTHHHHHHHHTSCC----------CCTTBCCCBTTBCCCSEEEEEEEEESSSCEEEEE
T ss_pred CCeEEecCCC-cEEEECCCCCcHHHHHHHHHHHhCCCchhhcccccHHHhhccCccCCCCCceEEEEEEEEeCCeEEEEE
Confidence 3678899999 9999999999999999999833
Q ss_pred ---cCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHH-----------HH--------------hhh
Q 040099 1063 ---YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIA-----------EM--------------ANA 1113 (1236)
Q Consensus 1063 ---~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~-----------~~--------------a~~ 1113 (1236)
+.+.+|.+++||.+++.-+...+++.+++.||+..++ .|+|.+|+. .. .+.
T Consensus 95 r~~~~~~~~~~~ing~~~~~~~~~~~~~~~g~~~~~~~lv~qg~i~~~~~~~p~~rr~~ld~~~~~~~~~~~y~rv~e~~ 174 (322)
T 1e69_A 95 RELKRTGENTYYLNGSPVRLKDIRDRFAGTGLGVDFYSIVGQGQIDRIVNASPEELRLESSKHPTSLVPRGSYQRVNESF 174 (322)
T ss_dssp EEEETTSCEEEEETTEEECHHHHHHHTTTSSTTTTCCSEEEHHHHHHHHTC---------------------CHHHHHHH
T ss_pred EEEEcCCceEEEECCcCccHHHHHHHHHHcCCChhheeeEehhhHHHHHhccHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 3444679999999987666777778899999988765 888888762 00 000
Q ss_pred chH------------------HHhhhhchhhhhc------CCCCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCC
Q 040099 1114 NGF------------------ISGLQEGYDTLVG------ERGVQLSGGQKQRVAIARAIV----KEPKILLLDEATSAL 1165 (1236)
Q Consensus 1114 ~~~------------------i~~lp~Gldt~vg------e~G~~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaL 1165 (1236)
.++ ...++.|+++.++ .....||||||||++|||||. ++|+||||||||++|
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~~~~~~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~L 254 (322)
T 1e69_A 175 NRFISLLFFGGEGRLNIVSEAKSILDAGFEISIRKPGRRDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPL 254 (322)
T ss_dssp HHHHHHHHTSCEEEC--------------CCEEECTTSCCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSC
T ss_pred HHHHHHhcCCceEEEEeeccccccccCCeEEEEecCccccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCC
Confidence 011 0123445555433 234689999999999999996 789999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEE--EEEeCCEE-EEecChhHH
Q 040099 1166 DIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLI--AVVSQGMI-VEKGSHESL 1219 (1236)
Q Consensus 1166 D~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I--~Vl~~G~I-ve~Gt~~eL 1219 (1236)
|+.+...+.+.|++..+++|+|+|||+.+.+..||++ ++|++|+. +...+.++.
T Consensus 255 D~~~~~~l~~~l~~~~~~~~vi~~tH~~~~~~~~d~~~~v~~~~g~s~~~~~~~~~~ 311 (322)
T 1e69_A 255 DDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMVNGVSAIVPVEVEKI 311 (322)
T ss_dssp CHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEESSSCEEEEECCC---
T ss_pred CHHHHHHHHHHHHHhcCCCeEEEEECCHHHHhhCceEEEEEEeCCEEEEEEEEcchh
Confidence 9999999999999987788999999998888889987 88888853 333444443
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.1e-27 Score=254.48 Aligned_cols=158 Identities=18% Similarity=0.250 Sum_probs=102.0
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
+.+|+|+ ++||+++|+||||||||||+++|+|+ +|++|+|. +.++.. +...++++||||||++ +|
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~e 77 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NE 77 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC-----------
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HH
Confidence 4689996 89999999999999999999999999 99999994 333321 2223577899999997 56
Q ss_pred HH-hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHH
Q 040099 480 NI-AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 480 ni-~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~ 558 (1236)
|+ .++.+. .+.+........+.+.+.. | | |||||++|||||+.+|++||||||||+ +
T Consensus 78 nl~~~~~~~--~~~~~~~~~~~~~~~~l~~---g-----------l--Gq~qrv~lAraL~~~p~lllLDEPts~----~ 135 (208)
T 3b85_A 78 KIDPYLRPL--HDALRDMVEPEVIPKLMEA---G-----------I--VEVAPLAYMRGRTLNDAFVILDEAQNT----T 135 (208)
T ss_dssp --CTTTHHH--HHHHTTTSCTTHHHHHHHT---T-----------S--EEEEEGGGGTTCCBCSEEEEECSGGGC----C
T ss_pred HHHHHHHHH--HHHHHHhccHHHHHHHHHh---C-----------C--chHHHHHHHHHHhcCCCEEEEeCCccc----c
Confidence 66 332110 0000000000111222221 2 1 999999999999999999999999999 8
Q ss_pred HHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 559 GRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 559 ~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
...+.+.|+++.+++|+| +||+++.+. ++...++|.
T Consensus 136 ~~~l~~~l~~l~~g~tii-vtHd~~~~~---~~~~~~~G~ 171 (208)
T 3b85_A 136 PAQMKMFLTRLGFGSKMV-VTGDITQVD---LPGGQKSGL 171 (208)
T ss_dssp HHHHHHHHTTBCTTCEEE-EEEC---------------CC
T ss_pred HHHHHHHHHHhcCCCEEE-EECCHHHHh---CcCCCCCcH
Confidence 888999998875578888 999988654 344455653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.91 E-value=9.9e-27 Score=249.33 Aligned_cols=156 Identities=13% Similarity=0.170 Sum_probs=103.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
.+|+|+ ++||++||+||||||||||+++|.|+ +|++|+|. +.++.. +...+|++++||||+| +||
T Consensus 14 ~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~--~~~~~~-~~~~~~~~ig~v~q~~-------~en 78 (208)
T 3b85_A 14 HYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVS--RIILTR-PAVEAGEKLGFLPGTL-------NEK 78 (208)
T ss_dssp HHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCS--EEEEEE-CSCCTTCCCCSSCC------------
T ss_pred HHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeee--eEEecC-CchhhhcceEEecCCH-------HHH
Confidence 589995 99999999999999999999999999 99999994 344432 2334688999999998 444
Q ss_pred HHHHh-hhchHHHh--hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCC
Q 040099 1107 IAEMA-NANGFISG--LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVD 1183 (1236)
Q Consensus 1107 L~~~a-~~~~~i~~--lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~ 1183 (1236)
+.... ...+-+.. -.+..+..+.. | | |||||++|||||+.+|+|||||||||+ +...+.+.|+++.++
T Consensus 79 l~~~~~~~~~~~~~~~~~~~~~~~l~~-g--l--Gq~qrv~lAraL~~~p~lllLDEPts~----~~~~l~~~l~~l~~g 149 (208)
T 3b85_A 79 IDPYLRPLHDALRDMVEPEVIPKLMEA-G--I--VEVAPLAYMRGRTLNDAFVILDEAQNT----TPAQMKMFLTRLGFG 149 (208)
T ss_dssp -CTTTHHHHHHHTTTSCTTHHHHHHHT-T--S--EEEEEGGGGTTCCBCSEEEEECSGGGC----CHHHHHHHHTTBCTT
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHh-C--C--chHHHHHHHHHHhcCCCEEEEeCCccc----cHHHHHHHHHHhcCC
Confidence 41000 00000000 01123333433 2 3 999999999999999999999999999 888999999887457
Q ss_pred CeEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1184 RTTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1184 ~TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
+|+| |||+++.+. ++...++|..
T Consensus 150 ~tii-vtHd~~~~~---~~~~~~~G~~ 172 (208)
T 3b85_A 150 SKMV-VTGDITQVD---LPGGQKSGLR 172 (208)
T ss_dssp CEEE-EEEC---------------CCH
T ss_pred CEEE-EECCHHHHh---CcCCCCCcHH
Confidence 8899 999988655 3445667743
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.91 E-value=2.8e-25 Score=231.71 Aligned_cols=149 Identities=16% Similarity=0.205 Sum_probs=115.4
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC--CCChhhHHHHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP--VLFSDTIRANIA 1108 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp--~LF~gTIreNL~ 1108 (1236)
||||++++||.++|+||||||||||++++.+ |... ++.+.+| ++++|++ ..+.++..+++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~--------~~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEV--------ISSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGE--------EEHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeE--------EccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 2111 2334455 6788987 466777777764
Q ss_pred HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH----------------HH
Q 040099 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE----------------RV 1172 (1236)
Q Consensus 1109 ~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te----------------~~ 1172 (1236)
..+. ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++ ..
T Consensus 64 ~~~~-----~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~~~~~~~~vi~~~~~~ 137 (171)
T 4gp7_A 64 YIVS-----KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRTDRQVEEYVIRKHTQQ 137 (171)
T ss_dssp HHHH-----HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCSSCCCCHHHHHHHHHH
T ss_pred HHHH-----HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhcccCCCCCHHHHHHHHHH
Confidence 3322 22345665555443 35699999999999999999999999999999999954 77
Q ss_pred HHHHHHHHc-CCCeEEEEecCchhhhhcCEE
Q 040099 1173 VQDALDQVM-VDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1173 I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
+.+.|++.. +|.|+|+|+|+++.+..++++
T Consensus 138 l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 138 MKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp HHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred hhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 777766543 488999999999999888775
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.90 E-value=8.9e-28 Score=276.21 Aligned_cols=205 Identities=14% Similarity=0.074 Sum_probs=147.7
Q ss_pred CcChhHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHhccCCCccccccCCCCC-CCCCCcEE---------
Q 040099 318 GYSGGDVMSVIFGVLIGSMSLGQASP-CLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL-DDIRGDIE--------- 386 (1236)
Q Consensus 318 ~~t~g~~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~~~~i~--------- 386 (1236)
.+|.|++.+++.++.....+ .+.. ....++.+..+.+|+.++++.|+...... .... ....+.++
T Consensus 75 ~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~~~~~~~Ri~~~l~~p~~~~~~~--~~~ir~~~~~~i~l~~l~~~g~ 150 (330)
T 2pt7_A 75 AFSLSRLMHFARCCASFKKK--TIDNYENPILSSNLANGERVQIVLSPVTVNDETI--SISIRIPSKTTYPHSFFEEQGF 150 (330)
T ss_dssp GGSHHHHHHHHHHHHHHTTC--CCCSSSCCEEEEECTTSCEEEEECTTTSSSTTCC--EEEEECCCCCCCCHHHHHHTTT
T ss_pred CCCHHHHHHHHHHHHHHhCC--CCCCCCCeeEEEEcCCCcEEEEEEcCCccCCCCc--eEEEeCCCCCCCCHHHHHhCCC
Confidence 68999999888776654433 2222 22233334445678877775433211100 0000 00122344
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEE
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLV 466 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 466 (1236)
|++++| | .++++++||++++|+.++|+||||||||||+++|+|+++|++|.|.++|.+. +....+++.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e--~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEE--IVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCC--CCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeec--cccccchhEEEEE
Confidence 666666 6 2489999999999999999999999999999999999999999999998752 2222345566665
Q ss_pred ccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 040099 467 SQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546 (1236)
Q Consensus 467 ~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ili 546 (1236)
+| |||+||++|||||..+|+++|
T Consensus 223 ~g---------------------------------------------------------gg~~~r~~la~aL~~~p~ili 245 (330)
T 2pt7_A 223 FG---------------------------------------------------------GNITSADCLKSCLRMRPDRII 245 (330)
T ss_dssp CB---------------------------------------------------------TTBCHHHHHHHHTTSCCSEEE
T ss_pred eC---------------------------------------------------------CChhHHHHHHHHhhhCCCEEE
Confidence 40 899999999999999999999
Q ss_pred EeCcCCCCCHHHHHHHHHHHHHHccCc-eEEEEecCchhHhhcCeEEEEECCE
Q 040099 547 LDEATSALDSESGRMVQEALDRVMINR-TTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 547 lDE~ts~lD~~~~~~i~~~l~~~~~~~-t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
|||||+. .+.+.|+.+..|+ |+|+++|+++....|||+++|++|+
T Consensus 246 ldE~~~~-------e~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 246 LGELRSS-------EAYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSN 291 (330)
T ss_dssp ECCCCST-------HHHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTS
T ss_pred EcCCChH-------HHHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCC
Confidence 9999992 2456666666665 7999999999878899999998874
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=5.5e-25 Score=229.42 Aligned_cols=149 Identities=19% Similarity=0.236 Sum_probs=109.2
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCC--CCchhHHHHHh
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIA 482 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~ 482 (1236)
||||++++||+++|+||||||||||++++.+ |...+ +.+.+| ++++|++. .+.+++++++.
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~--------~~d~~~---g~~~~~~~~~~~~~~~~~~~~ 63 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVI--------SSDFCR---GLMSDDENDQTVTGAAFDVLH 63 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEE--------EHHHHH---HHHCSSTTCGGGHHHHHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEE--------ccHHHH---HHhcCcccchhhHHHHHHHHH
Confidence 6899999999999999999999999999653 22222 222333 67888763 33444444432
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH---
Q 040099 483 YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG--- 559 (1236)
Q Consensus 483 ~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~--- 559 (1236)
. ..+ ..+..|+.+.+... ...|||||||++||||+..+|++|+|||||++||+.++
T Consensus 64 ~------------~~~--------~~~~~g~~~~~~~~-~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~~R~ 122 (171)
T 4gp7_A 64 Y------------IVS--------KRLQLGKLTVVDAT-NVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNKNRT 122 (171)
T ss_dssp H------------HHH--------HHHHTTCCEEEESC-CCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHHTCS
T ss_pred H------------HHH--------HHHhCCCeEEEECC-CCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHhccc
Confidence 1 110 11122565555543 35699999999999999999999999999999999944
Q ss_pred -------------HHHHHHHHHHc-cCceEEEEecCchhHhhcCeE
Q 040099 560 -------------RMVQEALDRVM-INRTTVIVSHRLSLIRNANII 591 (1236)
Q Consensus 560 -------------~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i 591 (1236)
+.+.+.++++. +|.|+|+|||+++.+..++++
T Consensus 123 ~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~~~~ 168 (171)
T 4gp7_A 123 DRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEVVFE 168 (171)
T ss_dssp SCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHEEEE
T ss_pred CCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhhhhc
Confidence 77788776663 489999999999999877665
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=2.1e-23 Score=243.55 Aligned_cols=84 Identities=24% Similarity=0.361 Sum_probs=76.9
Q ss_pred cCCCCCCChHHHHHHHHHHHhc------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCe
Q 040099 518 GEHGIQLSGGQKQRVAIARAMI------KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANI 590 (1236)
Q Consensus 518 g~~g~~LSgGqkqRiaiARal~------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~ 590 (1236)
+....+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .|+|+|+|||+++....||+
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~ 353 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDR 353 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSC
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCE
Confidence 3456689999999999999999 7999999999999999999999999999885 47899999999999878999
Q ss_pred EEEEECCEEEE
Q 040099 591 IAVIQQGKIVE 601 (1236)
Q Consensus 591 i~vl~~G~i~~ 601 (1236)
+++|++|++++
T Consensus 354 ~~~l~~G~i~~ 364 (365)
T 3qf7_A 354 KLRITGGVVVN 364 (365)
T ss_dssp EEEEETTEEC-
T ss_pred EEEEECCEEEe
Confidence 99999999975
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7e-26 Score=260.43 Aligned_cols=141 Identities=18% Similarity=0.211 Sum_probs=119.6
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
|++|+| | .++++++||+|++|+.++|+||||||||||+++|.|+++|++|.|+++|.+ ++....+|+.++++
T Consensus 151 ~~~v~f-y-----~~~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~--e~~~~~~~~~i~~~ 222 (330)
T 2pt7_A 151 YNLLDN-K-----EQAISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTE--EIVFKHHKNYTQLF 222 (330)
T ss_dssp TTTSTT-H-----HHHHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSC--CCCCSSCSSEEEEE
T ss_pred cCchhh-H-----HHHHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCee--ccccccchhEEEEE
Confidence 666666 6 138999999999999999999999999999999999999999999999976 33333456777776
Q ss_pred cCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1093 SQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1093 ~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
+| |||+||++|||||.++|++|+|||||+. .
T Consensus 223 ~g------------------------------------------gg~~~r~~la~aL~~~p~ilildE~~~~-------e 253 (330)
T 2pt7_A 223 FG------------------------------------------GNITSADCLKSCLRMRPDRIILGELRSS-------E 253 (330)
T ss_dssp CB------------------------------------------TTBCHHHHHHHHTTSCCSEEEECCCCST-------H
T ss_pred eC------------------------------------------CChhHHHHHHHHhhhCCCEEEEcCCChH-------H
Confidence 51 8999999999999999999999999982 2
Q ss_pred HHHHHHHHcCCC-eEEEEecCchhhhhcCEEEEEeCCEE
Q 040099 1173 VQDALDQVMVDR-TTLVVAHRLSTIKNAHLIAVVSQGMI 1210 (1236)
Q Consensus 1173 I~~~L~~~~~~~-TvI~IaHRl~ti~~aD~I~Vl~~G~I 1210 (1236)
+++.|+.+..++ |+|+++|+++....||||++|++|..
T Consensus 254 ~~~~l~~~~~g~~tvi~t~H~~~~~~~~dri~~l~~g~~ 292 (330)
T 2pt7_A 254 AYDFYNVLCSGHKGTLTTLHAGSSEEAFIRLANMSSSNS 292 (330)
T ss_dssp HHHHHHHHHTTCCCEEEEEECSSHHHHHHHHHHHHHTSG
T ss_pred HHHHHHHHhcCCCEEEEEEcccHHHHHhhhheehhcCCc
Confidence 456666666665 79999999998888999999998863
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=6.1e-23 Score=239.66 Aligned_cols=82 Identities=20% Similarity=0.353 Sum_probs=75.5
Q ss_pred CCCCCChhHHHHHHHHHHHc------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEE
Q 040099 1131 RGVQLSGGQKQRVAIARAIV------KEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIA 1203 (1236)
Q Consensus 1131 ~G~~LSGGQrQRlaLARALl------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~ 1203 (1236)
...+||||||||++|||||+ .+|++|||||||++||+.+...+.+.|+++. .++|+|+|||+++.+..||+|+
T Consensus 276 ~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~~~~~d~~~ 355 (365)
T 3qf7_A 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREFSEAFDRKL 355 (365)
T ss_dssp EGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHHHTTCSCEE
T ss_pred CchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHHHHhCCEEE
Confidence 44579999999999999999 7999999999999999999999999999874 4789999999999988899999
Q ss_pred EEeCCEEEE
Q 040099 1204 VVSQGMIVE 1212 (1236)
Q Consensus 1204 Vl~~G~Ive 1212 (1236)
+|++|+|++
T Consensus 356 ~l~~G~i~~ 364 (365)
T 3qf7_A 356 RITGGVVVN 364 (365)
T ss_dssp EEETTEEC-
T ss_pred EEECCEEEe
Confidence 999999975
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.4e-25 Score=228.84 Aligned_cols=148 Identities=16% Similarity=0.219 Sum_probs=111.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
+++|+||||||||||+++|.|++. |.++|.+..+......++++++++|++ +..+|+. +.. . .
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~~--~~~-~----~ 64 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKIF--SSK-F----F 64 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEEE--EET-T----C
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHHH--Hhh-c----C
Confidence 689999999999999999999995 678888775554225678999999997 2333331 111 0 0
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHH-----HccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHcCCCeEEEEec--
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARA-----IVKEPKILLLDE--ATSALDIESERVVQDALDQVMVDRTTLVVAH-- 1191 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARA-----Llr~p~ILlLDE--aTSaLD~~te~~I~~~L~~~~~~~TvI~IaH-- 1191 (1236)
+ .+..++..+.+||||||||++|||| ++.+|++||||| ||+++|+.+.+.+.+.+++ .+.|+|+++|
T Consensus 65 ~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~~--~~~~~i~~~H~~ 140 (178)
T 1ye8_A 65 T--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHD--PNVNVVATIPIR 140 (178)
T ss_dssp C--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHTC--TTSEEEEECCSS
T ss_pred C--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHhc--CCCeEEEEEccC
Confidence 1 1124566677899999999999996 999999999999 9999999999999999976 4677899885
Q ss_pred -Cchhhhh-cCEEEEEeCCEEEEe
Q 040099 1192 -RLSTIKN-AHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1192 -Rl~ti~~-aD~I~Vl~~G~Ive~ 1213 (1236)
+.+.+.. ||+ .+|+|++.
T Consensus 141 h~~~~~~~i~~r----~~~~i~~~ 160 (178)
T 1ye8_A 141 DVHPLVKEIRRL----PGAVLIEL 160 (178)
T ss_dssp CCSHHHHHHHTC----TTCEEEEC
T ss_pred CCchHHHHHHhc----CCcEEEEe
Confidence 6677765 777 66777763
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=3.9e-27 Score=255.68 Aligned_cols=166 Identities=17% Similarity=0.175 Sum_probs=120.4
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH-HHHhcceEEEccCCCCCch----
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL-KWIREKIGLVSQEPVLLSS---- 475 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~-~~~r~~i~~v~Q~~~l~~~---- 475 (1236)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++...+. ...++.++|++|++.+|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 4799999999999999999999999999999999999 6 99999 877654322 2346789999999876653
Q ss_pred -------hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHH-----HHHhcCCCC
Q 040099 476 -------SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAI-----ARAMIKDPR 543 (1236)
Q Consensus 476 -------ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiai-----ARal~~~p~ 543 (1236)
++.+| .+|. ..+++.++++... ...++ .+||||||||++| ||+++.+|+
T Consensus 87 ~~~l~~~~~~~~-~~g~---~~~~i~~~l~~~~------------~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~ 147 (218)
T 1z6g_A 87 EDFLEYDNYANN-FYGT---LKSEYDKAKEQNK------------ICLFE---MNINGVKQLKKSTHIKNALYIFIKPPS 147 (218)
T ss_dssp TCEEEEEEETTE-EEEE---EHHHHHHHHHTTC------------EEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSC
T ss_pred cchhhhhhcccc-cCCC---cHHHHHHHHhCCC------------cEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcC
Confidence 22333 2332 2344555544321 12222 5799999999999 999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
+++|||||+++|.+++..|.+.+.+..+++| ++| +..||.|+|+++
T Consensus 148 ~~~Lde~~~~~d~~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 148 TDVLLSRLLTRNTENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 9999999999999999999999988877777 677 467999988764
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.89 E-value=8.5e-25 Score=228.83 Aligned_cols=147 Identities=14% Similarity=0.212 Sum_probs=109.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ 494 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 494 (1236)
+++|+||||||||||+++|+|++. |.++|.+..+......++++||++|++ +..+|+ ++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~~~~~~~~ig~~~~~~-----~~~~~~-~~~~-------- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVRDPETKKRTGFRIITT-----EGKKKI-FSSK-------- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC------CCEEEEEET-----TCCEEE-EEET--------
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhccccccceeEEEeecC-----cHHHHH-HHhh--------
Confidence 689999999999999999999985 567776654433224577899999986 222332 1100
Q ss_pred HHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH-----hcCCCCEEEEeC--cCCCCCHHHHHHHHHHHH
Q 040099 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA-----MIKDPRILLLDE--ATSALDSESGRMVQEALD 567 (1236)
Q Consensus 495 ~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa-----l~~~p~ililDE--~ts~lD~~~~~~i~~~l~ 567 (1236)
..+ .+..+++.+.+||||||||++|||| ++.+|+++|||| ||++||+...+.+.+.++
T Consensus 63 -------------~~~--~~~~~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l~~~l~ 127 (178)
T 1ye8_A 63 -------------FFT--SKKLVGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMH 127 (178)
T ss_dssp -------------TCC--CSSEETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHHHHHHT
T ss_pred -------------cCC--ccccccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHHHHHHh
Confidence 001 1135677788999999999999996 999999999999 999999999999999887
Q ss_pred HHccCceEEEEec---CchhHhh-cCeEEEEECCEEEE
Q 040099 568 RVMINRTTVIVSH---RLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 568 ~~~~~~t~i~itH---~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
+ .+.|+|+++| +...+.. ||+ .+|++++
T Consensus 128 ~--~~~~~i~~~H~~h~~~~~~~i~~r----~~~~i~~ 159 (178)
T 1ye8_A 128 D--PNVNVVATIPIRDVHPLVKEIRRL----PGAVLIE 159 (178)
T ss_dssp C--TTSEEEEECCSSCCSHHHHHHHTC----TTCEEEE
T ss_pred c--CCCeEEEEEccCCCchHHHHHHhc----CCcEEEE
Confidence 6 4667889885 7777765 777 5667665
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.89 E-value=1.1e-26 Score=252.01 Aligned_cols=164 Identities=15% Similarity=0.150 Sum_probs=117.4
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh-HHHhcceEEEcCCCCCChhh---
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV-KWLRQQMGVVSQEPVLFSDT--- 1102 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~-~~lR~~i~~V~Qdp~LF~gT--- 1102 (1236)
.-|+||||+|++|+++||+||||||||||+++|.|++ | |+|.+ |+++.+.+. ...|+.++|++|++.+|..-
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 86 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKKREKEKEGVDYYFIDKTIFEDKLKN 86 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCCCSSCCBTTTBEECCHHHHHHHHHT
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCCCcccccCCeEEECCHHHHHHhhhc
Confidence 3699999999999999999999999999999999999 6 99999 888765432 34578899999998776532
Q ss_pred --------HHHHHH--HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHH-----HHHHccCCCEEEEecCCCCCCH
Q 040099 1103 --------IRANIA--EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAI-----ARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1103 --------IreNL~--~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaL-----ARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
+++|.. ....+.+.+. .+....++ .+||||||||++| ||+++++|++++|||||+++|.
T Consensus 87 ~~~l~~~~~~~~~~g~~~~~i~~~l~---~~~~~il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Lde~~~~~d~ 160 (218)
T 1z6g_A 87 EDFLEYDNYANNFYGTLKSEYDKAKE---QNKICLFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLLSRLLTRNT 160 (218)
T ss_dssp TCEEEEEEETTEEEEEEHHHHHHHHH---TTCEEEEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHHHHHHHTCC
T ss_pred cchhhhhhcccccCCCcHHHHHHHHh---CCCcEEEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHHHHHHhcCC
Confidence 222210 0011111111 12222222 5789999999999 9999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeC
Q 040099 1168 ESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQ 1207 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~ 1207 (1236)
+++..|++.+.+..+++| ++| +..||.|+|+++
T Consensus 161 ~~~~~i~~~l~~~~~~~~---~~h----~~~~d~iiv~~~ 193 (218)
T 1z6g_A 161 ENQEQIQKRMEQLNIELH---EAN----LLNFNLSIINDD 193 (218)
T ss_dssp CCHHHHHHHHHHHHHHHH---HHT----TSCCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHHHH---hhc----ccCCCEEEECCC
Confidence 999999999988776777 678 577899888765
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=1.3e-24 Score=258.11 Aligned_cols=195 Identities=16% Similarity=0.148 Sum_probs=158.5
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe---ecccCC----
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV---EIQKLQ---- 1081 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~---di~~i~---- 1081 (1236)
..+++++|++.|+. ...+|+++ |+|++||++||+||||||||||+++|.|+++|+.|.|.++|. +++++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999973 24699999 999999999999999999999999999999999999999998 565542
Q ss_pred -hHHHhcceEEEcCC--CCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1082 -VKWLRQQMGVVSQE--PVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1082 -~~~lR~~i~~V~Qd--p~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
...+++.+++|+|+ |....-|+.+|+...+.... .........+ +...+||+|| ||++|| +++|++
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~ae~~~---~~~~~v~~~l-d~l~~lS~g~-qrvslA---l~~p~~--- 275 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIAEDFR---DRGQHVLLIM-DSLTRYAMAQ-REIALA---IGEPPA--- 275 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHHHHHH---TTTCEEEEEE-ECHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHHHHHH---hCCCCHHHHH-HhHHHHHHHH-HHHHHH---hCCCcc---
Confidence 45688999999995 34446699999864332211 0000111111 2356799999 999999 999998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC-----CC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1159 DEATSALDIESERVVQDALDQVMV-----DR-----TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~-----~~-----TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.+|+|++.|++.++..
T Consensus 276 ---t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~~~~~~~~~ 344 (438)
T 2dpy_A 276 ---TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLSRRLAEAGH 344 (438)
T ss_dssp ---SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEECHHHHHTTC
T ss_pred ---cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEeCCHHHccC
Confidence 999999999999999988755 43 9999999999 67799999999999999999999865
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.87 E-value=8.5e-25 Score=259.78 Aligned_cols=195 Identities=15% Similarity=0.135 Sum_probs=156.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe---ecCCCC----
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV---NLKEFQ---- 455 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~---~~~~~~---- 455 (1236)
..++++|+++.|+. +..+|+++ |+|++||+++|+||||||||||+++|+|+++|+.|.|.++|+ ++.++.
T Consensus 130 ~~l~~~~v~~~~~t--g~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~ 206 (438)
T 2dpy_A 130 NPLQRTPIEHVLDT--GVRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENIL 206 (438)
T ss_dssp CTTTSCCCCSBCCC--SCHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTT
T ss_pred CceEEeccceecCC--CceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhc
Confidence 45889999999962 35799999 999999999999999999999999999999999999999998 554431
Q ss_pred -HHHHhcceEEEccC-CCC-CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 456 -LKWIREKIGLVSQE-PVL-LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 456 -~~~~r~~i~~v~Q~-~~l-~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
...+++.++||+|+ ..+ ...|+.+|+.+.. +.... +...+..+ + +...+||+|| ||+
T Consensus 207 ~~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a------e~~~~-~~~~v~~~-----------l-d~l~~lS~g~-qrv 266 (438)
T 2dpy_A 207 GPDGRARSVVIAAPADVSPLLRMQGAAYATRIA------EDFRD-RGQHVLLI-----------M-DSLTRYAMAQ-REI 266 (438)
T ss_dssp HHHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH------HHHHT-TTCEEEEE-----------E-ECHHHHHHHH-HHH
T ss_pred cccccCceEEEEECCCCCHHHHHHHHHHHHHHH------HHHHh-CCCCHHHH-----------H-HhHHHHHHHH-HHH
Confidence 34578899999995 333 3569999988631 11110 00111111 1 2245799999 999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-----Cc-----eEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-----NR-----TTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-----~~-----t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
+|| +.+|++ |++||+.+...+.+.+.++.+ |+ |++++||+++ ...||++++|.+|+|+.+
T Consensus 267 slA---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~-~~iad~v~~l~dG~Ivl~ 336 (438)
T 2dpy_A 267 ALA---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ-DPIADSARAILDGHIVLS 336 (438)
T ss_dssp HHH---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC-CHHHHHHHHHSSEEEEEC
T ss_pred HHH---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc-chhhceEEEEeCcEEEEe
Confidence 999 899998 999999999999999988854 53 9999999999 667999999999999999
Q ss_pred eCcccccc
Q 040099 603 GTHSELLE 610 (1236)
Q Consensus 603 g~~~~l~~ 610 (1236)
|++.++..
T Consensus 337 ~~~~~~~~ 344 (438)
T 2dpy_A 337 RRLAEAGH 344 (438)
T ss_dssp HHHHHTTC
T ss_pred CCHHHccC
Confidence 99888754
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.86 E-value=2.5e-24 Score=252.27 Aligned_cols=167 Identities=18% Similarity=0.173 Sum_probs=131.7
Q ss_pred CccccceeEEecCCc--------------------EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 400 EQILNGFCLLIPNGT--------------------IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~--------------------~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
+.+|++|||++++|+ ++||+||||||||||+|+|+|+++|++|+|.++|.++.
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 358999999999999 99999999999999999999999999999999997653
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHH
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG--QKQRVAIARA 537 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG--qkqRiaiARa 537 (1236)
| .++++|++...+.|++||+.++.+. +.+.+.++..++.+ ++..+ . |||| ||||++||||
T Consensus 109 ~--~~~v~q~~~~~~ltv~D~~g~~~~~---~~~~~~L~~~~L~~--------~~~~~----~-lS~G~~~kqrv~la~a 170 (413)
T 1tq4_A 109 M--ERHPYKHPNIPNVVFWDLPGIGSTN---FPPDTYLEKMKFYE--------YDFFI----I-ISATRFKKNDIDIAKA 170 (413)
T ss_dssp C--CCEEEECSSCTTEEEEECCCGGGSS---CCHHHHHHHTTGGG--------CSEEE----E-EESSCCCHHHHHHHHH
T ss_pred e--eEEeccccccCCeeehHhhcccchH---HHHHHHHHHcCCCc--------cCCeE----E-eCCCCccHHHHHHHHH
Confidence 1 2889999754466999998877542 23445555554332 12222 2 8999 9999999999
Q ss_pred hcC----------CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc------c----CceEEEEecCchh--Hhh-cCeE
Q 040099 538 MIK----------DPRILLLDEATSALDSESGRMVQEALDRVM------I----NRTTVIVSHRLSL--IRN-ANII 591 (1236)
Q Consensus 538 l~~----------~p~ililDE~ts~lD~~~~~~i~~~l~~~~------~----~~t~i~itH~~~~--~~~-ad~i 591 (1236)
|.+ +|++++|||||++||+.++..+.+.++++. . .+++++.||.++. ++. ||+|
T Consensus 171 L~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I 247 (413)
T 1tq4_A 171 ISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKL 247 (413)
T ss_dssp HHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHH
T ss_pred HHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHH
Confidence 999 999999999999999999999988887763 1 2567778998876 654 7776
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.84 E-value=8.7e-23 Score=231.30 Aligned_cols=175 Identities=16% Similarity=0.211 Sum_probs=127.3
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCC-CCc-
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPV-LLS- 474 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~- 474 (1236)
++++||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |.+|+|++|++. +++
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 35688899999999999999999999999999999999999999999876542 1233 457999999987 765
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCC
Q 040099 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATS 552 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts 552 (1236)
.|++||+.++.....+ ...++.. |..........+|| |||++||||+..+|+ +|+|| ||+
T Consensus 170 ~~v~e~l~~~~~~~~d------------~~lldt~--gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pts 231 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYD------------VVLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNT 231 (302)
T ss_dssp HHHHHHHHHHHHTTCS------------EEEECCC--CCSSCCHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGG
T ss_pred HHHHHHHHHHHHcCCc------------chHHhcC--CCCcchhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCC
Confidence 4999999864211000 0011111 22222222233588 999999999999999 99999 999
Q ss_pred CCCHHHHHHHHHHHHHHccCceEEEEec---------CchhHhh-cCeEEEEECCEE
Q 040099 553 ALDSESGRMVQEALDRVMINRTTVIVSH---------RLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 553 ~lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~~-ad~i~vl~~G~i 599 (1236)
++|+.+.. +.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.
T Consensus 232 glD~~~~~---~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~ 284 (302)
T 3b9q_A 232 GLNMLPQA---REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 284 (302)
T ss_dssp GGGGHHHH---HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred CcCHHHHH---HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCC
Confidence 99998653 22221 23789999999 3444433 789999999964
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=2.2e-23 Score=244.28 Aligned_cols=163 Identities=18% Similarity=0.212 Sum_probs=124.7
Q ss_pred ccccceeEEecCCC--------------------EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHh
Q 040099 1027 EVFRDLCLTIPPGK--------------------TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLR 1086 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge--------------------~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR 1086 (1236)
.+|++|||+|++|| .+||+||||||||||+++|.|+++|++|+|.++|.++. |
T Consensus 37 ~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t-------~ 109 (413)
T 1tq4_A 37 EILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT-------M 109 (413)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------C
T ss_pred HHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------e
Confidence 58999999999999 99999999999999999999999999999999998763 2
Q ss_pred cceEEEcCCCCCChhhHHHHHHH---HhhhchHHHhhh-hchhhhhcCCCCCCChh--HHHHHHHHHHHcc---------
Q 040099 1087 QQMGVVSQEPVLFSDTIRANIAE---MANANGFISGLQ-EGYDTLVGERGVQLSGG--QKQRVAIARAIVK--------- 1151 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~gTIreNL~~---~a~~~~~i~~lp-~Gldt~vge~G~~LSGG--QrQRlaLARALlr--------- 1151 (1236)
.++++|++....-|++||+.- ...+.++++.+. ..++..+ .|||| ||||++|||||.+
T Consensus 110 --~~~v~q~~~~~~ltv~D~~g~~~~~~~~~~~L~~~~L~~~~~~~-----~lS~G~~~kqrv~la~aL~~~~~p~~lV~ 182 (413)
T 1tq4_A 110 --ERHPYKHPNIPNVVFWDLPGIGSTNFPPDTYLEKMKFYEYDFFI-----IISATRFKKNDIDIAKAISMMKKEFYFVR 182 (413)
T ss_dssp --CCEEEECSSCTTEEEEECCCGGGSSCCHHHHHHHTTGGGCSEEE-----EEESSCCCHHHHHHHHHHHHTTCEEEEEE
T ss_pred --eEEeccccccCCeeehHhhcccchHHHHHHHHHHcCCCccCCeE-----EeCCCCccHHHHHHHHHHHhcCCCeEEEE
Confidence 278999986546688777520 111222332221 0112111 28999 9999999999999
Q ss_pred -CCCEEEEecCCCCCCHHHHHHHHHHHHHHc------C----CCeEEEEecCchh--hhh-cCEEE
Q 040099 1152 -EPKILLLDEATSALDIESERVVQDALDQVM------V----DRTTLVVAHRLST--IKN-AHLIA 1203 (1236)
Q Consensus 1152 -~p~ILlLDEaTSaLD~~te~~I~~~L~~~~------~----~~TvI~IaHRl~t--i~~-aD~I~ 1203 (1236)
+|++|+|||||++||+.+...+.+.|++.. . ..++++-||.++. +.. ||+|.
T Consensus 183 tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d~I~ 248 (413)
T 1tq4_A 183 TKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMDKLI 248 (413)
T ss_dssp CCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHHHHH
T ss_pred ecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHHHHH
Confidence 999999999999999999999999888763 1 2456677999886 655 77774
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.83 E-value=2.8e-21 Score=218.91 Aligned_cols=171 Identities=16% Similarity=0.238 Sum_probs=126.1
Q ss_pred ccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCC-CCh-
Q 040099 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPV-LFS- 1100 (1236)
Q Consensus 1029 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~-LF~- 1100 (1236)
++++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 45789999999999999999999999999999999999999999999986543 2334 457999999997 665
Q ss_pred hhHHHHHHHHh--hhc-hHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHH
Q 040099 1101 DTIRANIAEMA--NAN-GFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVV 1173 (1236)
Q Consensus 1101 gTIreNL~~~a--~~~-~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I 1173 (1236)
.|++||+.... +.. .+++.. .+-.+..+ ..|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 170 ~~v~e~l~~~~~~~~d~~lldt~gl~~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-ptsglD~~~~~-- 239 (302)
T 3b9q_A 170 TVLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA-- 239 (302)
T ss_dssp HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHH----HHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGGGGGHHHH--
T ss_pred HHHHHHHHHHHHcCCcchHHhcCCCCcchhHHH----HHHH---HHHHHHHHhhccCCCeeEEEEe-CCCCcCHHHHH--
Confidence 59999986321 110 011110 01111222 2488 999999999999999 99999 99999998653
Q ss_pred HHHHHHHcCCCeEEEEec---------Cchhhhh-cCEEEEEeCCEEE
Q 040099 1174 QDALDQVMVDRTTLVVAH---------RLSTIKN-AHLIAVVSQGMIV 1211 (1236)
Q Consensus 1174 ~~~L~~~~~~~TvI~IaH---------Rl~ti~~-aD~I~Vl~~G~Iv 1211 (1236)
+.+.+ ..+.|+|++|| .++.+.. .+.|.++..|+.+
T Consensus 240 -~~~~~-~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 240 -REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp -HHHHH-HTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred -HHHHH-hcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 22332 23789999999 4444433 6899999999653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=1.8e-23 Score=238.12 Aligned_cols=201 Identities=14% Similarity=0.170 Sum_probs=140.6
Q ss_pred HHHHHHHHHHhccCCCccccccCCCCCCCCCCcEEEEeEEEECCCCCCCccccceeEE----------------------
Q 040099 352 QAAAFKFFEAINRKPEIDLCCVNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLL---------------------- 409 (1236)
Q Consensus 352 ~~s~~ri~~~l~~~~~~~~~~~~~~~~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~---------------------- 409 (1236)
+.+..|+.+.+..+.+.++. .......+.|+++||++.|. ++++++++.
T Consensus 15 r~~~~~l~~~~~~~~~~~~~----~~l~~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 85 (312)
T 3aez_A 15 RRQWRALRMSTPLALTEEEL----VGLRGLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNP 85 (312)
T ss_dssp HHHHHGGGTTCCCCCCHHHH----HTTCCTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCS
T ss_pred HHHHHHHHhcCCCCCCHHHH----HhccCCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhccccccc
Confidence 34556666555444332211 12334556799999999993 577887775
Q ss_pred -ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC---
Q 040099 410 -IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK--- 485 (1236)
Q Consensus 410 -i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~--- 485 (1236)
+++|+++||+||||||||||+++|.|+++|+.|. ++++||+|++++++.|++||+.+..
T Consensus 86 ~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g 148 (312)
T 3aez_A 86 DRPVPFIIGVAGSVAVGKSTTARVLQALLARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKG 148 (312)
T ss_dssp SSCCCEEEEEECCTTSCHHHHHHHHHHHHHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTT
T ss_pred CCCCCEEEEEECCCCchHHHHHHHHHhhccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcC
Confidence 8999999999999999999999999999998763 4799999999999889999997632
Q ss_pred -CCC-CHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 486 -THA-TKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 486 -~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
+.. ..+.+. +++..+..|.. ..+ ..|||||+||+++|||++.+|+|||||||++.+|+..
T Consensus 149 ~~~~~d~~~~~---------~~L~~l~~~~~~~~~----~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~---- 211 (312)
T 3aez_A 149 FPESYNRRALM---------RFVTSVKSGSDYACA----PVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT---- 211 (312)
T ss_dssp SGGGBCHHHHH---------HHHHHHHTTCSCEEE----EEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS----
T ss_pred CChHHHHHHHH---------HHHHHhCCCcccCCc----ccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch----
Confidence 211 122333 33333333433 333 4799999999999999999999999999999998622
Q ss_pred HHHHHHHccCceEEEEecCchhHh--hcCeEEEEECCE
Q 040099 563 QEALDRVMINRTTVIVSHRLSLIR--NANIIAVIQQGK 598 (1236)
Q Consensus 563 ~~~l~~~~~~~t~i~itH~~~~~~--~ad~i~vl~~G~ 598 (1236)
..+.++. ..+|+|+|+.+... ..+|.+.+.+|+
T Consensus 212 -~~l~~~~--D~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 212 -LMVSDLF--DFSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp -CCGGGGC--SEEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred -HHHHHhc--CcEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 1122221 24577777776542 356655555543
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-20 Score=215.14 Aligned_cols=82 Identities=22% Similarity=0.246 Sum_probs=75.9
Q ss_pred CCChHHHHHHHHHHHhc---------CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEE
Q 040099 523 QLSGGQKQRVAIARAMI---------KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAV 593 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~---------~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~v 593 (1236)
.||||||||++|||+|+ .+|+|||||||||+||+.....+.+.+.++. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 59999999999999999 8999999999999999999999999998864 79999999 444 8999999
Q ss_pred EECCEEEEEeCccccc
Q 040099 594 IQQGKIVEKGTHSELL 609 (1236)
Q Consensus 594 l~~G~i~~~g~~~~l~ 609 (1236)
|++|++++.|+++++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999998873
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.7e-22 Score=225.49 Aligned_cols=147 Identities=16% Similarity=0.160 Sum_probs=96.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCC---H
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHAT---K 490 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~---~ 490 (1236)
.+|||||||||||||+|+|+|++.|++|+|.++|.++.. ...++.++|++|++.++.. ||.||+.||..... .
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 589999999999999999999999999999999988743 2345789999999988765 99999999864322 2
Q ss_pred HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 491 ~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
+.+.+... .++...++ ..||||||||+++|||++. +++|||||++||+... .+ ++.+.
T Consensus 81 ~~i~~~~~----~~~~~~~~-----------~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~---l~~L~ 138 (270)
T 3sop_A 81 EPIEKYIN----EQYEKFLK-----------EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EF---MKHLS 138 (270)
T ss_dssp HHHHHHHH----HHHHHHHH-----------HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HH---HHHHH
T ss_pred HHHHHHHH----HHHHhhhH-----------HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HH---HHHHH
Confidence 33333332 23333332 2699999999999999886 9999999999999873 33 33343
Q ss_pred cCceEEEEecCchhHh
Q 040099 571 INRTTVIVSHRLSLIR 586 (1236)
Q Consensus 571 ~~~t~i~itH~~~~~~ 586 (1236)
+..++|+|.|+.+.+.
T Consensus 139 ~~~~vI~Vi~K~D~lt 154 (270)
T 3sop_A 139 KVVNIIPVIAKADTMT 154 (270)
T ss_dssp TTSEEEEEETTGGGSC
T ss_pred hcCcEEEEEeccccCC
Confidence 3489999999887653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.82 E-value=7.4e-23 Score=232.97 Aligned_cols=172 Identities=19% Similarity=0.238 Sum_probs=129.8
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEE-----------------------ecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLT-----------------------IPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~-----------------------I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
...+.|+++||++.|. ++++++++. +++|+.+||+||||||||||+++|.|+
T Consensus 39 ~~~~~i~~~~v~~~y~-----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gl 113 (312)
T 3aez_A 39 GLGEQIDLLEVEEVYL-----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQAL 113 (312)
T ss_dssp CTTCCCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CCCCeEEeeehhhhhh-----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhh
Confidence 4456799999999994 367777765 899999999999999999999999999
Q ss_pred cCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH-----------hhhchHHHhhhhchhhhhcCC
Q 040099 1063 YDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM-----------ANANGFISGLQEGYDTLVGER 1131 (1236)
Q Consensus 1063 ~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~-----------a~~~~~i~~lp~Gldt~vge~ 1131 (1236)
++|..|. +++++|+||+++++.|++||+... ..+.+++..+..|.. ...
T Consensus 114 l~~~~G~-----------------~~v~~v~qd~~~~~~t~~e~~~~~~~~g~~~~~d~~~~~~~L~~l~~~~~---~~~ 173 (312)
T 3aez_A 114 LARWDHH-----------------PRVDLVTTDGFLYPNAELQRRNLMHRKGFPESYNRRALMRFVTSVKSGSD---YAC 173 (312)
T ss_dssp HHTSTTC-----------------CCEEEEEGGGGBCCHHHHHHTTCTTCTTSGGGBCHHHHHHHHHHHHTTCS---CEE
T ss_pred ccccCCC-----------------CeEEEEecCccCCcccHHHHHHHHHhcCCChHHHHHHHHHHHHHhCCCcc---cCC
Confidence 9998663 579999999999988999997411 122334444443332 011
Q ss_pred CCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhh--hcCEEEEEeCCE
Q 040099 1132 GVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIK--NAHLIAVVSQGM 1209 (1236)
Q Consensus 1132 G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~--~aD~I~Vl~~G~ 1209 (1236)
...|||||+||+++|||++.+|+|||||||++.+|+.. ..+.+.+ + .+|+|.|..+... ..+|.+.+.+|+
T Consensus 174 ~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~-----~~l~~~~-D-~~I~V~a~~~~~~~R~i~R~~~~rd~~ 246 (312)
T 3aez_A 174 APVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT-----LMVSDLF-D-FSLYVDARIEDIEQWYVSRFLAMRTTA 246 (312)
T ss_dssp EEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS-----CCGGGGC-S-EEEEEEECHHHHHHHHHHHHHHHTTTG
T ss_pred cccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch-----HHHHHhc-C-cEEEEECCHHHHHHHHHHHHHHHHhcc
Confidence 24799999999999999999999999999999998632 1233332 3 4577888777652 366766665543
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.82 E-value=6.8e-22 Score=227.75 Aligned_cols=173 Identities=16% Similarity=0.209 Sum_probs=127.7
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCC-CCc-h
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPV-LLS-S 475 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~-l~~-~ 475 (1236)
+.+||++++|++++|||||||||||+++.|+|++.|++|+|.++|.|+.... ...+ |..|+|++|++. +++ .
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 3578899999999999999999999999999999999999999999886532 1223 467999999987 665 5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSA 553 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~ 553 (1236)
|++||+.++.....+ . ..++.. |..........+|| |||++||||+..+|+ +|+|| ||++
T Consensus 228 tv~e~l~~~~~~~~d---------~---~lldt~--Gl~~~~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttg 289 (359)
T 2og2_A 228 VLSKAVKRGKEEGYD---------V---VLCDTS--GRLHTNYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 289 (359)
T ss_dssp HHHHHHHHHHHTTCS---------E---EEEECC--CCSSCCHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGG
T ss_pred hHHHHHHHHHhCCCH---------H---HHHHhc--CCChhhhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCC
Confidence 999999875211000 0 011111 22222222233588 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHHccCceEEEEec---------CchhHh-hcCeEEEEECCE
Q 040099 554 LDSESGRMVQEALDRVMINRTTVIVSH---------RLSLIR-NANIIAVIQQGK 598 (1236)
Q Consensus 554 lD~~~~~~i~~~l~~~~~~~t~i~itH---------~~~~~~-~ad~i~vl~~G~ 598 (1236)
+|+.+... .+.+ ..+.|+|++|| .++.+. ..+.|..+..|+
T Consensus 290 lD~~~~~~---~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge 340 (359)
T 2og2_A 290 LNMLPQAR---EFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGE 340 (359)
T ss_dssp GGGHHHHH---HHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSS
T ss_pred CCHHHHHH---HHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCC
Confidence 99986532 2221 23789999999 344443 378999999986
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-20 Score=213.41 Aligned_cols=82 Identities=24% Similarity=0.252 Sum_probs=76.4
Q ss_pred CCChhHHHHHHHHHHHc---------cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEE
Q 040099 1134 QLSGGQKQRVAIARAIV---------KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV 1204 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALl---------r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~V 1204 (1236)
.||||||||++|||+|. .+|+|||||||||+||+.....+.+.|++.. .|+|++|| ++. .||++++
T Consensus 265 ~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th-~~~--~~~~i~~ 339 (359)
T 2o5v_A 265 YASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTE-LAP--GAALTLR 339 (359)
T ss_dssp HCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESS-CCT--TCSEEEE
T ss_pred hCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEe-ccc--cCCEEEE
Confidence 69999999999999999 8999999999999999999999999998863 79999999 454 8999999
Q ss_pred EeCCEEEEecChhHHh
Q 040099 1205 VSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1205 l~~G~Ive~Gt~~eLl 1220 (1236)
|++|+|++.|+|+++.
T Consensus 340 l~~G~i~~~g~~~~~~ 355 (359)
T 2o5v_A 340 AQAGRFTPVADEEMQA 355 (359)
T ss_dssp EETTEEEECCCTTTSC
T ss_pred EECCEEEecCCHHHHh
Confidence 9999999999999883
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.81 E-value=1.4e-22 Score=218.15 Aligned_cols=168 Identities=17% Similarity=0.142 Sum_probs=111.0
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIR 478 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~ 478 (1236)
.++++| .+|++||+++|+||||||||||+++|+|+++ .|.+++.....-+....++.++|++|++.+|.. |+.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~~ 82 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSVSATTRAPRPGEVDGVDYHFIDPTRFQQLIDQ 82 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHHHT
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcccccccCCcccccCCCeeEecCHHHHHHHHhc
Confidence 468888 7999999999999999999999999999996 345554221111112235679999999987764 777
Q ss_pred HHHhc-----CC-C--CCCHHHHHHHHH----------HhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 479 DNIAY-----GK-T--HATKEEIQAAAE----------AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 479 ~ni~~-----g~-~--~~~~~~~~~~~~----------~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
+|+.. ++ . ..+.+++.+.++ ..++.++....|. .|| ||+.
T Consensus 83 ~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~-----------~lS-----------~l~~ 140 (207)
T 1znw_A 83 GELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPE-----------AVT-----------VFLA 140 (207)
T ss_dssp TCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTT-----------SEE-----------EEEE
T ss_pred CCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCC-----------cEE-----------EEEE
Confidence 77632 10 0 112333333332 2233333333332 344 8999
Q ss_pred CCCEEEEeCcCCCC----CHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEE
Q 040099 541 DPRILLLDEATSAL----DSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQ 595 (1236)
Q Consensus 541 ~p~ililDE~ts~l----D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~ 595 (1236)
+|++++|||||+++ |+...+.+.+.++++. .+.|+|+|||+++.+.. ||+|++|.
T Consensus 141 ~p~~~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 141 PPSWQDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp CSCHHHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred CCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 99999999999998 7788899999998875 37899999999999865 99999984
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.2e-20 Score=215.13 Aligned_cols=169 Identities=15% Similarity=0.233 Sum_probs=126.0
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCC-CC-hh
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPV-LF-SD 1101 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~-LF-~g 1101 (1236)
+++||++++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+.... +..+ |..+++|+|++. ++ ..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 4578899999999999999999999999999999999999999999986542 2333 567999999987 65 45
Q ss_pred hHHHHHHHHh--hhc-hHHHhh--hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHH
Q 040099 1102 TIRANIAEMA--NAN-GFISGL--QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQ 1174 (1236)
Q Consensus 1102 TIreNL~~~a--~~~-~~i~~l--p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~ 1174 (1236)
|+++|+.... +.. .+++.. .+-.+..+ ..|| |||++||||+..+|+ +|+|| ||+++|+.+..
T Consensus 228 tv~e~l~~~~~~~~d~~lldt~Gl~~~~~~~~----~eLS---kqr~~iaral~~~P~e~lLvLD-pttglD~~~~~--- 296 (359)
T 2og2_A 228 VLSKAVKRGKEEGYDVVLCDTSGRLHTNYSLM----EELI---ACKKAVGKIVSGAPNEILLVLD-GNTGLNMLPQA--- 296 (359)
T ss_dssp HHHHHHHHHHHTTCSEEEEECCCCSSCCHHHH----HHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGGGGHHHH---
T ss_pred hHHHHHHHHHhCCCHHHHHHhcCCChhhhhHH----HHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCCCHHHHH---
Confidence 9999986321 111 011110 00011122 2488 999999999999999 99999 99999998663
Q ss_pred HHHHHHcCCCeEEEEec---------Cchhhh-hcCEEEEEeCCEE
Q 040099 1175 DALDQVMVDRTTLVVAH---------RLSTIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1175 ~~L~~~~~~~TvI~IaH---------Rl~ti~-~aD~I~Vl~~G~I 1210 (1236)
+.+.+ ..+.|+|++|| .++.+. ..+.|..+..|+.
T Consensus 297 ~~~~~-~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~ 341 (359)
T 2og2_A 297 REFNE-VVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEA 341 (359)
T ss_dssp HHHHH-HTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSS
T ss_pred HHHHH-hcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCC
Confidence 22322 23789999999 344443 3679999999964
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.1e-22 Score=210.51 Aligned_cols=111 Identities=16% Similarity=0.226 Sum_probs=88.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC---CcEEEECCeecccCC---hHHHh-cceE----EEcCCCCCChhhHHHHHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVEIQKLQ---VKWLR-QQMG----VVSQEPVLFSDTIRANIA 1108 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~---~G~I~idG~di~~i~---~~~lR-~~i~----~V~Qdp~LF~gTIreNL~ 1108 (1236)
++++|||+||||||||+++|.|+|+|+ .|.|++||.++.+++ .+.+| ++++ +++|++.+|-..-.+.+
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~i~~~~~~~- 81 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAFIRRVSEEE- 81 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEEEEECCHHH-
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEEEecCChhh-
Confidence 689999999999999999999999998 899999999988887 77888 5788 89999998811000111
Q ss_pred HHhhhchHHHh-hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1109 EMANANGFISG-LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1109 ~~a~~~~~i~~-lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
.+++++++.. +| ||||.++|+ |||||||||+||||++++|+|.
T Consensus 82 -~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 82 -GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 5688999999 99 999999995 9999999999999999999873
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.79 E-value=8.2e-21 Score=218.98 Aligned_cols=195 Identities=16% Similarity=0.191 Sum_probs=148.2
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCC-------CCH
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKE-------FQL 456 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~-------~~~ 456 (1236)
.++.+++++.|+. +..+|+++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.++ ...
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999962 35799999 9999999999999999999999999999999999999998875321 122
Q ss_pred HHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc-ccCCCCCCChHHHHHHHHH
Q 040099 457 KWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN-VGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 457 ~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~-~g~~g~~LSgGqkqRiaiA 535 (1236)
..+++.+.+++|... + ..+++..+.....+.++... .|.+.. +-+...+||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~----~------------~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----P------------ALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTS----C------------HHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCC----C------------HHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 335556777776421 1 12333333333334444332 233321 113456899999 999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc---Cc-----eEEEEecCchhHhhcCeEEEEECCEEEEEeCccc
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI---NR-----TTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~---~~-----t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
+.+|++ |++||+.....+.+.++++.+ |. |++++||+++ -..||++++|.+|+|+.+|+.++
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~ 252 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAE 252 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHT
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHH
Confidence 688888 999999999999999998853 66 8999999998 45599999999999999998877
Q ss_pred ccc
Q 040099 608 LLE 610 (1236)
Q Consensus 608 l~~ 610 (1236)
+..
T Consensus 253 ~~~ 255 (347)
T 2obl_A 253 ENH 255 (347)
T ss_dssp TTC
T ss_pred cCC
Confidence 643
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-22 Score=224.54 Aligned_cols=174 Identities=18% Similarity=0.197 Sum_probs=142.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHHhcceEEEcc-----CCCCCc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWIREKIGLVSQ-----EPVLLS 474 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 474 (1236)
++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.... +..+++++| ++..|.
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~~~gl~~~~l~ 88 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQREVGEDTKSFA 88 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEEEBTTTBSCHH
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHHHhCCCHHHHH
Confidence 4899999 9999999999999999999999999999998 999999998876442 345678888 556677
Q ss_pred hhHHHHHhcCCCCC-------CHHHHHHHHHHhcc-----------------HHHH------------HhCCCCcccccc
Q 040099 475 SSIRDNIAYGKTHA-------TKEEIQAAAEAANA-----------------SHFI------------KNLPQGLDTNVG 518 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~-----------------~~~i------------~~l~~g~~t~~g 518 (1236)
.+++.+++.. |+. +.+.+..+++.+.. +..+ ..+++++++.++
T Consensus 89 ~~la~aL~~~-p~illlDEp~D~~~~~~~l~~~~~g~~vl~t~H~~~~~~~~dri~~l~~~~~~~~~~~~l~~~l~~vi~ 167 (261)
T 2eyu_A 89 DALRAALRED-PDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 167 (261)
T ss_dssp HHHHHHHHHC-CSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSHHHHHHHHHHTSCGGGHHHHHHHHHHHEEEEEE
T ss_pred HHHHHHHhhC-CCEEEeCCCCCHHHHHHHHHHHccCCEEEEEeCcchHHHHHHHHhhhcCccccchHHHHHHHHhhEEEE
Confidence 8999999873 433 56655555544321 1111 134568999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEEeCcCCCCCHHH---------HHHHHHHHHHHccCceEEEEecCch
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRI--LLLDEATSALDSES---------GRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~i--lilDE~ts~lD~~~---------~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
+++..+|+| ||+++||+++.+|++ +|+||+|+++|... +..++++++.+.+|+|.+.++||++
T Consensus 168 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~ 241 (261)
T 2eyu_A 168 QRLLPKIGG--GRVLAYGLLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEAS 241 (261)
T ss_dssp EEEECCSSS--SSEEEEEEECCCHHHHHHHHHTCHHHHHHHHHHSCSCTTEECHHHHHHHHHHTTSSCHHHHHHHC
T ss_pred EEeEecCCC--CEEEEEEEecCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHcCCCCHHHHHHHh
Confidence 999999999 999999999999999 99999999999874 3467888888889999999999986
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.78 E-value=3.7e-22 Score=214.89 Aligned_cols=174 Identities=18% Similarity=0.160 Sum_probs=109.7
Q ss_pred cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-ChHHHhcceEEEcCCCCCChh-hH
Q 040099 1026 IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-QVKWLRQQMGVVSQEPVLFSD-TI 1103 (1236)
Q Consensus 1026 ~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-~~~~lR~~i~~V~Qdp~LF~g-TI 1103 (1236)
.++++| .+|++||.+||+||||||||||+++|.|+++ .|.+++ ++... +....|+.++|++|++.+|.. |+
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~----~i~~~~-~~~~~~~~~~~~~~i~~~~q~~~~~~~~~~ 81 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIP----NLHFSV-SATTRAPRPGEVDGVDYHFIDPTRFQQLID 81 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHST----TCEECC-CEESSCCCTTCCBTTTBEECCHHHHHHHHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCC----ceEEcc-cccccCCcccccCCCeeEecCHHHHHHHHh
Confidence 468999 7999999999999999999999999999996 355554 22221 112346789999999987754 55
Q ss_pred HHHHHHHhhhch--HHHhhhh-chhhhhcCC-----CCCCChhHHHHHHHHH---HHccCCCEEEEecCCCCC----CHH
Q 040099 1104 RANIAEMANANG--FISGLQE-GYDTLVGER-----GVQLSGGQKQRVAIAR---AIVKEPKILLLDEATSAL----DIE 1168 (1236)
Q Consensus 1104 reNL~~~a~~~~--~i~~lp~-Gldt~vge~-----G~~LSGGQrQRlaLAR---ALlr~p~ILlLDEaTSaL----D~~ 1168 (1236)
.+|+.+.....+ .....+. .....+.+. ...+.|.+.++-..++ ||+.+|++++|||||+++ |+.
T Consensus 82 ~~~l~~~~~~~~n~~~~g~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~lS~l~~~p~~~~LDep~~~l~~~~d~~ 161 (207)
T 1znw_A 82 QGELLEWAEIHGGLHRSGTLAQPVRAAAATGVPVLIEVDLAGARAIKKTMPEAVTVFLAPPSWQDLQARLIGRGTETADV 161 (207)
T ss_dssp TTCEEEEEEEGGGTEEEEEEHHHHHHHHHHTCCEEEECCHHHHHHHHHHCTTSEEEEEECSCHHHHHHHHHTTSCSCHHH
T ss_pred cCCceeehhhcCchhhcCCcHHHHHHHHHcCCeEEEEeCHHHHHHHHHhcCCcEEEEEECCCHHHHHHHHHhcCCCCHHH
Confidence 555421100000 0000000 000111110 0235566655555555 789999999999999998 677
Q ss_pred HHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEe
Q 040099 1169 SERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVS 1206 (1236)
Q Consensus 1169 te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~ 1206 (1236)
+.+.+++.+++.. .+.|+|+|+|+++.+.. ||+|++|.
T Consensus 162 ~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~ 202 (207)
T 1znw_A 162 IQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGT 202 (207)
T ss_dssp HHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhc
Confidence 8889999888764 37899999999999865 99999984
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.2e-21 Score=202.87 Aligned_cols=111 Identities=21% Similarity=0.230 Sum_probs=88.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCeecCCCC---HHHHh-cceE----EEccCCCCCchhHHHHHh
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGVNLKEFQ---LKWIR-EKIG----LVSQEPVLLSSSIRDNIA 482 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~~~~~~~---~~~~r-~~i~----~v~Q~~~l~~~ti~~ni~ 482 (1236)
++++|||+||||||||+++|+|+|+|+ .|.|.+||.++.+++ .+.+| +++| +++|++++| +++
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~~d~~r~~~ig~~~~~~~~~~~~~---i~~--- 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEGKDSWKIYNSGADVVIASPVKLAF---IRR--- 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC------------CHHHHHHHHTCEEEEECSSEEEE---EEE---
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccchhHHHHHhcCCceEEECCCcEEE---Eec---
Confidence 689999999999999999999999998 899999999988776 66777 4788 899999887 111
Q ss_pred cCCCCCCHHHHHHHHHHhccHHHHHh-CCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 040099 483 YGKTHATKEEIQAAAEAANASHFIKN-LPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545 (1236)
Q Consensus 483 ~g~~~~~~~~~~~~~~~~~~~~~i~~-l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~il 545 (1236)
+ .+ +. .+++++++.+ +| |+||.++|+ |||||||||+||||++++|++.
T Consensus 77 -~----~~-~~-----~a~l~~~i~~~l~-g~dt~i~Eg---lSgGq~qri~lARall~~p~i~ 125 (171)
T 2f1r_A 77 -V----SE-EE-----GNDLDWIYERYLS-DYDLVITEG---FSKAGKDRIVVVKKPEEVEHFR 125 (171)
T ss_dssp -C----CH-HH-----HTCHHHHHHHHTT-TCSEEEEES---CGGGCCCEEEECSSGGGGGGGC
T ss_pred -C----Ch-hh-----hhCHHHHHHhhCC-CCCEEEECC---cCCCCCcEEEEEecccCCCccC
Confidence 1 11 21 6789999999 99 999999995 9999999999999999999873
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.5e-20 Score=207.02 Aligned_cols=131 Identities=23% Similarity=0.334 Sum_probs=102.8
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
++|+++| +++|+.++|+||||||||||+++|.|+++|+ +|+|.++|.++..+. +..+++++|+
T Consensus 15 ~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~----~~~~~~v~q~---------- 78 (261)
T 2eyu_A 15 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF----KHKKSIVNQR---------- 78 (261)
T ss_dssp THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC----CCSSSEEEEE----------
T ss_pred HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec----CCcceeeeHH----------
Confidence 3899999 9999999999999999999999999999998 999999998875332 2233444442
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCe
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRT 1185 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~T 1185 (1236)
+-|++ ...| |++|||||..+|++++||||| |+++...+ ++....+.|
T Consensus 79 ---------------~~gl~------~~~l------~~~la~aL~~~p~illlDEp~---D~~~~~~~---l~~~~~g~~ 125 (261)
T 2eyu_A 79 ---------------EVGED------TKSF------ADALRAALREDPDVIFVGEMR---DLETVETA---LRAAETGHL 125 (261)
T ss_dssp ---------------EBTTT------BSCH------HHHHHHHHHHCCSEEEESCCC---SHHHHHHH---HHHHHTTCE
T ss_pred ---------------HhCCC------HHHH------HHHHHHHHhhCCCEEEeCCCC---CHHHHHHH---HHHHccCCE
Confidence 11221 1223 899999999999999999999 99886544 444446899
Q ss_pred EEEEecCchhhhhcCEEEEEe
Q 040099 1186 TLVVAHRLSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1186 vI~IaHRl~ti~~aD~I~Vl~ 1206 (1236)
+++++|+.+....|||+++|.
T Consensus 126 vl~t~H~~~~~~~~dri~~l~ 146 (261)
T 2eyu_A 126 VFGTLHTNTAIDTIHRIVDIF 146 (261)
T ss_dssp EEEEECCSSHHHHHHHHHHTS
T ss_pred EEEEeCcchHHHHHHHHhhhc
Confidence 999999998777788876654
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.77 E-value=6.7e-22 Score=208.48 Aligned_cols=158 Identities=18% Similarity=0.228 Sum_probs=122.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHH
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS 1118 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~ 1118 (1236)
||+++|+||||||||||+++|.|+++ ++| |.+||.++.+++ .+++++++++|+. .++ ++|+. .. .+
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~---~~-~~-- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLS---RV-GL-- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEE---EC-CC--
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhh---cc-cc--
Confidence 79999999999999999999999999 999 999999987654 4789999999986 443 23331 11 01
Q ss_pred hhhh-chhhhhcCCCCCCChhHHHHH-HHHH---HHccCCCEEEEec--CCCCCCHHHHHHHHHHHHHHcCCCeEE----
Q 040099 1119 GLQE-GYDTLVGERGVQLSGGQKQRV-AIAR---AIVKEPKILLLDE--ATSALDIESERVVQDALDQVMVDRTTL---- 1187 (1236)
Q Consensus 1119 ~lp~-Gldt~vge~G~~LSGGQrQRl-aLAR---ALlr~p~ILlLDE--aTSaLD~~te~~I~~~L~~~~~~~TvI---- 1187 (1236)
..++ ..+..+++.+..+|+|||+++ +++| |++++|+|||||| ||..+|....+.+.+.++. ..|+|
T Consensus 67 ~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~l~~---~~~~ilgti 143 (189)
T 2i3b_A 67 EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLST---PGTIILGTI 143 (189)
T ss_dssp CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHC---SSCCEEEEC
T ss_pred cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHHHhC---CCcEEEEEe
Confidence 0011 122367888889999999999 5666 7899999999999 8999999988888888864 34555
Q ss_pred EEecCchhhhhcCEEEEEeCCEEEEec
Q 040099 1188 VVAHRLSTIKNAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1188 ~IaHRl~ti~~aD~I~Vl~~G~Ive~G 1214 (1236)
.|+||.+ ....|+|..+++|+|++..
T Consensus 144 ~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 144 PVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp CCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred ecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 3449986 4567888888999998864
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.77 E-value=4.1e-22 Score=232.86 Aligned_cols=175 Identities=18% Similarity=0.216 Sum_probs=144.4
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHHhcceEEEcc-----CCCCCc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWIREKIGLVSQ-----EPVLLS 474 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~r~~i~~v~Q-----~~~l~~ 474 (1236)
++|++++ +++|++++|+|||||||||++++|+|+++|+ +|+|.+.|.++. + .++..++||+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677765 8999999999999999999999999999998 899987776654 2 35678999999 888999
Q ss_pred hhHHHHHhcCCCCC-------CHHHHHHHHHHhccH-----------------HHH------------HhCCCCcccccc
Q 040099 475 SSIRDNIAYGKTHA-------TKEEIQAAAEAANAS-----------------HFI------------KNLPQGLDTNVG 518 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~-------~~~~~~~~~~~~~~~-----------------~~i------------~~l~~g~~t~~g 518 (1236)
.++++|++. .|+. +.+.+..+++.++.. ..+ ..+++++++.++
T Consensus 200 ~~l~~~L~~-~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~ 278 (372)
T 2ewv_A 200 DALRAALRE-DPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIIS 278 (372)
T ss_dssp HHHHHHTTS-CCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEE
T ss_pred HHHHHHhhh-CcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEE
Confidence 999999997 4554 677777777765431 111 124678999999
Q ss_pred CCCCCCChHHHHHHHHHHHhcCCCCE--EEEeCcCCCCCHH----H-----HHHHHHHHHHHccCceEEEEecCchh
Q 040099 519 EHGIQLSGGQKQRVAIARAMIKDPRI--LLLDEATSALDSE----S-----GRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 519 ~~g~~LSgGqkqRiaiARal~~~p~i--lilDE~ts~lD~~----~-----~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
+++..+||| ||+++||+++.+|+| +|+||+|++||.. + +..++++++.+.+|+|.+.++||++.
T Consensus 279 qrl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 279 QRLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EEeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 999999999 899999999999999 9999999999975 3 34577888888889999999999974
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.3e-20 Score=210.40 Aligned_cols=140 Identities=19% Similarity=0.172 Sum_probs=92.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHHHHHh--------
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA-------- 1111 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a-------- 1111 (1236)
++|||||||||||||+++|+|++.|++|+|.++|.++.. ...++.+++++|++.++.. ||.||+.-..
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~---~~~~~~i~~v~q~~~~~~~ltv~d~~~~g~~~~~~~~~ 80 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPK---TVEIKAIGHVIEEGGVKMKLTVIDTPGFGDQINNENCW 80 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCC---CCSCCEEEESCC----CCEEEEECCCC--CCSBCTTCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCc---ceeeeeeEEEeecCCCcCCceEEechhhhhhcccHHHH
Confidence 489999999999999999999999999999999988743 3456889999999988765 9999873110
Q ss_pred -hhchHHHhhhhch-hhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEE
Q 040099 1112 -NANGFISGLQEGY-DTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVV 1189 (1236)
Q Consensus 1112 -~~~~~i~~lp~Gl-dt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~I 1189 (1236)
.+.+++. ..+ +... ..||||||||+++|||++. +++|||||++||+... .+.+.|++ ..++|+|
T Consensus 81 ~~i~~~~~---~~~~~~~~----~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD~-~~l~~L~~---~~~vI~V 146 (270)
T 3sop_A 81 EPIEKYIN---EQYEKFLK----EEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLDL-EFMKHLSK---VVNIIPV 146 (270)
T ss_dssp HHHHHHHH---HHHHHHHH----HHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHHH-HHHHHHHT---TSEEEEE
T ss_pred HHHHHHHH---HHHHhhhH----HhcCcccchhhhhheeeee---eEEEecCCCcCCHHHH-HHHHHHHh---cCcEEEE
Confidence 1122222 122 2222 2599999999999999885 9999999999999863 33344433 4899999
Q ss_pred ecCchhhh
Q 040099 1190 AHRLSTIK 1197 (1236)
Q Consensus 1190 aHRl~ti~ 1197 (1236)
.|+.+++.
T Consensus 147 i~K~D~lt 154 (270)
T 3sop_A 147 IAKADTMT 154 (270)
T ss_dssp ETTGGGSC
T ss_pred EeccccCC
Confidence 99988763
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=2.4e-20 Score=215.14 Aligned_cols=192 Identities=15% Similarity=0.152 Sum_probs=146.3
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC-------Ch
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL-------QV 1082 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i-------~~ 1082 (1236)
.++.+++++.|.. ...+|+++ |+|.+||++||+||||||||||+++|.|+.+|+.|.|.++|.+.+++ ..
T Consensus 45 ~i~~~~l~~~~~t--g~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 45 PLLRQVIDQPFIL--GVRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp STTCCCCCSEECC--SCHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CeeecccceecCC--CCEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 4788999999973 24699999 99999999999999999999999999999999999999999763332 33
Q ss_pred HHHhcceEEEcCCCCCChhhHHHHHHHH---hhhchHHHhhhhchhhh-hcCCCCCCChhHHHHHHHHHHHccCCCEEEE
Q 040099 1083 KWLRQQMGVVSQEPVLFSDTIRANIAEM---ANANGFISGLQEGYDTL-VGERGVQLSGGQKQRVAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1083 ~~lR~~i~~V~Qdp~LF~gTIreNL~~~---a~~~~~i~~lp~Gldt~-vge~G~~LSGGQrQRlaLARALlr~p~ILlL 1158 (1236)
..+++.+.+++|.+. +..+++... ..+.++... .|.+.. +-+...+||+|| ||+++| +.+|++
T Consensus 122 ~~~~~~v~~~~~~~~----~~~~r~~~~~~~~~~ae~~~~--~~~~vl~~ld~~~~lS~g~-r~v~la---l~~p~~--- 188 (347)
T 2obl_A 122 STLSKCVLVVTTSDR----PALERMKAAFTATTIAEYFRD--QGKNVLLMMDSVTRYARAA-RDVGLA---SGEPDV--- 188 (347)
T ss_dssp HHHTTEEEEEECTTS----CHHHHHHHHHHHHHHHHHHHT--TTCEEEEEEETHHHHHHHH-HHHHHH---TTCCCC---
T ss_pred hhhhceEEEEECCCC----CHHHHHHHHHHHHHHHHHHHh--ccccHHHHHhhHHHHHHHH-HHHHHH---cCCCCc---
Confidence 456778899998642 112332211 111111111 122210 012345799999 999999 689998
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHcC---CC-----eEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1159 DEATSALDIESERVVQDALDQVMV---DR-----TTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~~---~~-----TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
|+++|+.....+.+.++++.+ |. |++++||+++ -.-||++++|.+|+|+..|+++++..
T Consensus 189 ---t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~-~~i~d~v~~i~dG~Ivl~~~l~~~~~ 255 (347)
T 2obl_A 189 ---RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN-DPIGDEVRSILDGHIVLTRELAEENH 255 (347)
T ss_dssp ---BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC-CHHHHHHHHHCSEEEEBCHHHHTTTC
T ss_pred ---ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC-ChhhhheEEeeCcEEEEeCCHHHcCC
Confidence 999999999999999988752 55 8999999999 45599999999999999999988743
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.76 E-value=1e-18 Score=213.96 Aligned_cols=77 Identities=21% Similarity=0.325 Sum_probs=72.2
Q ss_pred CCC-ChHHHHHHHHHHHhcCCC--CEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCE
Q 040099 522 IQL-SGGQKQRVAIARAMIKDP--RILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGK 598 (1236)
Q Consensus 522 ~~L-SgGqkqRiaiARal~~~p--~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~ 598 (1236)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|+|+|||+++.+..||++++|++|.
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~~ 474 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQV 474 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECCE
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEeccc
Confidence 456 999999999999999999 99999999999999999999999999877899999999999888899999997653
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.76 E-value=6.4e-21 Score=201.01 Aligned_cols=158 Identities=18% Similarity=0.232 Sum_probs=119.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHH
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEE 492 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~ 492 (1236)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..+++ .+++++||++|+. .++ ++|+.. ...
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~--~~~~~ig~~~~~~---~g~-~~~l~~--~~~---- 66 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR--QGGRRIGFDVVTL---SGT-RGPLSR--VGL---- 66 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE--TTSSEEEEEEEET---TSC-EEEEEE--CCC----
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH--hhhceEEEEEEec---ccc-eehhhc--ccc----
Confidence 78999999999999999999999999 999 999998886543 4688999999985 222 122211 000
Q ss_pred HHHHHHHhccHHHHHhCC-CCccccccCCCCCCChHHHHHH-HHHH---HhcCCCCEEEEeC--cCCCCCHHHHHHHHHH
Q 040099 493 IQAAAEAANASHFIKNLP-QGLDTNVGEHGIQLSGGQKQRV-AIAR---AMIKDPRILLLDE--ATSALDSESGRMVQEA 565 (1236)
Q Consensus 493 ~~~~~~~~~~~~~i~~l~-~g~~t~~g~~g~~LSgGqkqRi-aiAR---al~~~p~ililDE--~ts~lD~~~~~~i~~~ 565 (1236)
..+ ...+..+|+.+..+|||||+++ +++| |+..+|++||||| ||..+|....+.+.+.
T Consensus 67 ---------------~~~~~~~~~~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~l~~~ 131 (189)
T 2i3b_A 67 ---------------EPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQT 131 (189)
T ss_dssp ---------------CCCSSSCCEESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHH
T ss_pred ---------------cCCccccccccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHHHHHH
Confidence 001 1123478888999999999998 5566 7899999999999 8999999877777776
Q ss_pred HHHHccCceEEE--Ee--cCchhHhhcCeEEEEECCEEEEEe
Q 040099 566 LDRVMINRTTVI--VS--HRLSLIRNANIIAVIQQGKIVEKG 603 (1236)
Q Consensus 566 l~~~~~~~t~i~--it--H~~~~~~~ad~i~vl~~G~i~~~g 603 (1236)
+++ .+|+|+ ++ ||.+ ...+|+|..+++|+|++-.
T Consensus 132 l~~---~~~~ilgti~vsh~~~-~~~vd~i~~~~~~~i~~~~ 169 (189)
T 2i3b_A 132 LST---PGTIILGTIPVPKGKP-LALVEEIRNRKDVKVFNVT 169 (189)
T ss_dssp HHC---SSCCEEEECCCCCSSC-CTTHHHHHTTCCSEEEECC
T ss_pred HhC---CCcEEEEEeecCCCCc-hHHHHHHeecCCcEEEEeC
Confidence 653 445554 34 9876 4557888888999998743
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.75 E-value=2e-18 Score=211.44 Aligned_cols=76 Identities=25% Similarity=0.313 Sum_probs=71.2
Q ss_pred CCC-ChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 040099 1133 VQL-SGGQKQRVAIARAIVKEP--KILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQG 1208 (1236)
Q Consensus 1133 ~~L-SGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G 1208 (1236)
..| |||||||++|||||+.+| ++|||||||++||+.+...|.+.|+++.+++|||+|||+++.+..||++++|++|
T Consensus 395 ~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~~~d~~~~~~~~ 473 (517)
T 4ad8_A 395 SDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAARAHHHYKVEKQ 473 (517)
T ss_dssp SSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHHHSSEEEEEECC
T ss_pred HhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhCCEEEEEecc
Confidence 346 999999999999999999 9999999999999999999999999887789999999999999889999999554
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=9.6e-19 Score=199.13 Aligned_cols=181 Identities=14% Similarity=0.110 Sum_probs=122.3
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
++|+++++.+++|++++|+||||||||||++.|++...|++| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 589999999999999999999999999999999999999988 77554332 3455666666555555432 2233
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH-HHHHHHHHHhcCCCCEEEEeCcCC---C--
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ-KQRVAIARAMIKDPRILLLDEATS---A-- 553 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq-kqRiaiARal~~~p~ililDE~ts---~-- 553 (1236)
|+..+. .++++..++++ +.+...+ + .+.+...++|.+| +||+. |+|+..+|+++|+||||+ +
T Consensus 97 ~l~~~~--~~~~~~~~~~~-----~~l~~~~--l--~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~ 164 (296)
T 1cr0_A 97 SLKREI--IENGKFDQWFD-----ELFGNDT--F--HLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASG 164 (296)
T ss_dssp HHHHHH--HHHTHHHHHHH-----HHHSSSC--E--EEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-------
T ss_pred ccccCC--CCHHHHHHHHH-----HHhccCC--E--EEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCC
Confidence 443321 11222222221 1222211 1 1233335689999 77777 999999999999999999 4
Q ss_pred -CCH-HHHHHHHHHHHHHcc--CceEEEEecCc--h--------------------hHh-hcCeEEEEECCEE
Q 040099 554 -LDS-ESGRMVQEALDRVMI--NRTTVIVSHRL--S--------------------LIR-NANIIAVIQQGKI 599 (1236)
Q Consensus 554 -lD~-~~~~~i~~~l~~~~~--~~t~i~itH~~--~--------------------~~~-~ad~i~vl~~G~i 599 (1236)
+|. .....+.+.|+++.+ +.|+|+++|.. + .+. .||+|++|++|+.
T Consensus 165 ~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 165 ESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ----CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 454 555678888887743 78999999995 4 555 4999999999975
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-17 Score=193.93 Aligned_cols=76 Identities=29% Similarity=0.385 Sum_probs=68.4
Q ss_pred CCCCCChHHHH------HHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhhcCeEE
Q 040099 520 HGIQLSGGQKQ------RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRNANIIA 592 (1236)
Q Consensus 520 ~g~~LSgGqkq------RiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~ad~i~ 592 (1236)
....||||||| |+++|||++.+|++|||||||++||+.....+.+.|+++. .++|+|+|||+.+....||+++
T Consensus 245 ~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~ 324 (339)
T 3qkt_A 245 PLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVI 324 (339)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEE
T ss_pred ChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEE
Confidence 45679999999 6788999999999999999999999999999999998874 4689999999987777799999
Q ss_pred EEE
Q 040099 593 VIQ 595 (1236)
Q Consensus 593 vl~ 595 (1236)
+|+
T Consensus 325 ~l~ 327 (339)
T 3qkt_A 325 RIS 327 (339)
T ss_dssp EEE
T ss_pred EEE
Confidence 985
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.6e-18 Score=197.29 Aligned_cols=177 Identities=15% Similarity=0.117 Sum_probs=119.0
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
++|+++++.+++|+.++|+||||||||||++.|.+...|.+| .|.+.+.+ .+...+++++..+.|+..+ +..+
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e---~~~~~~~~r~~~~~~~~~~---~~~~ 96 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE---ESVEETAEDLIGLHNRVRL---RQSD 96 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS---SCHHHHHHHHHHHHTTCCG---GGCH
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc---CCHHHHHHHHHHHHcCCCh---hhcc
Confidence 479999999999999999999999999999999999999878 77654433 3556677776666655432 1122
Q ss_pred HHH----HHhhhchHHHhhhhchhhhhcCCCCCCChhH-HHHHHHHHHHccCCCEEEEecCCC---C---CCH-HHHHHH
Q 040099 1106 NIA----EMANANGFISGLQEGYDTLVGERGVQLSGGQ-KQRVAIARAIVKEPKILLLDEATS---A---LDI-ESERVV 1173 (1236)
Q Consensus 1106 NL~----~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQ-rQRlaLARALlr~p~ILlLDEaTS---a---LD~-~te~~I 1173 (1236)
|+. ........+..+-+...-.+.+...++|.+| +||+. |+++..+|++||+||||+ + +|. .....+
T Consensus 97 ~l~~~~~~~~~~~~~~~~~l~~~~l~i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~~~~~~~~d~~~~~~~i 175 (296)
T 1cr0_A 97 SLKREIIENGKFDQWFDELFGNDTFHLYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIVVSASGESDERKMIDNL 175 (296)
T ss_dssp HHHHHHHHHTHHHHHHHHHHSSSCEEEECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC-----------CHHHHHH
T ss_pred ccccCCCCHHHHHHHHHHHhccCCEEEECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCccccCCCCCCCCHHHHHHHH
Confidence 221 0000111111110100111233335689999 67776 999999999999999999 4 454 555677
Q ss_pred HHHHHHHcC--CCeEEEEecCc--h--------------------hhh-hcCEEEEEeCCEE
Q 040099 1174 QDALDQVMV--DRTTLVVAHRL--S--------------------TIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1174 ~~~L~~~~~--~~TvI~IaHRl--~--------------------ti~-~aD~I~Vl~~G~I 1210 (1236)
.+.|+++.+ ++|||+++|.. + .+. .||+|++|++|+.
T Consensus 176 ~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 176 MTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp HHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred HHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 788877643 79999999995 4 554 5999999999875
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-21 Score=227.59 Aligned_cols=161 Identities=22% Similarity=0.259 Sum_probs=134.2
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHHhcceEEEcC-----CCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWLRQQMGVVSQ-----EPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~lR~~i~~V~Q-----dp~LF~ 1100 (1236)
++|++++ +++|+.++|+|||||||||++++|.|+++|+ +|+|.++|.++. + .+|+.+++|+| ++..|+
T Consensus 126 ~~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e-~---~~~~~~~~v~Q~~~g~~~~~~~ 199 (372)
T 2ewv_A 126 DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIE-Y---VFKHKKSIVNQREVGEDTKSFA 199 (372)
T ss_dssp SSHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCC-S---CCCCSSSEEEEEEBTTTBSCSH
T ss_pred HHHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHh-h---hhccCceEEEeeecCCCHHHHH
Confidence 3677766 8999999999999999999999999999998 899987776664 2 36788999999 899999
Q ss_pred hhHHHHHH---------------------HHhhhc-------------hHH----------------HhhhhchhhhhcC
Q 040099 1101 DTIRANIA---------------------EMANAN-------------GFI----------------SGLQEGYDTLVGE 1130 (1236)
Q Consensus 1101 gTIreNL~---------------------~~a~~~-------------~~i----------------~~lp~Gldt~vge 1130 (1236)
++|++||. +.++.. +.+ ..+++++++.|++
T Consensus 200 ~~l~~~L~~~pd~illdE~~d~e~~~~~l~~~~~g~~vi~t~H~~~~~~~~~rl~~l~~~~~~~~~~~~l~~~l~~vv~q 279 (372)
T 2ewv_A 200 DALRAALREDPDVIFVGEMRDLETVETALRAAETGHLVFGTLHTNTAIDTIHRIVDIFPLNQQEQVRIVLSFILQGIISQ 279 (372)
T ss_dssp HHHHHHTTSCCSEEEESCCCSHHHHHHHHHHHTTTCEEEECCCCCSHHHHHHHHHHTSCTTSHHHHHHHHHHSCCEEEEE
T ss_pred HHHHHHhhhCcCEEEECCCCCHHHHHHHHHHHhcCCEEEEEECcchHHHHHHHHHHhcCcccchhHHHHHHHhhhEEEEE
Confidence 99999973 111110 011 1256788999999
Q ss_pred CCCCCChhHHHHHHHHHHHccCCCE--EEEecCCCCCCHH----H-----HHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1131 RGVQLSGGQKQRVAIARAIVKEPKI--LLLDEATSALDIE----S-----ERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1131 ~G~~LSGGQrQRlaLARALlr~p~I--LlLDEaTSaLD~~----t-----e~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
++..+|+| ||+++||+++.+|+| +|+||+|+++|.. + +..++++++...+|+|.+.+|||++.
T Consensus 280 rl~~~~~G--~R~~i~e~l~~~~~i~~li~d~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~g~t~~~~a~r~~~ 353 (372)
T 2ewv_A 280 RLLPKIGG--GRVLAYELLIPNTAIRNLIRENKLQQVYSLMQSGQAETGMQTMNQTLYKLYKQGLITLEDAMEASP 353 (372)
T ss_dssp EEEECSSS--SEEEEEEECCCCSHHHHHHHHTCHHHHHHHCC-------CBCSHHHHHHTTTTSSSCTTTTTSSCS
T ss_pred EeEecCCC--CEEEEEEEeeCCHHHHHHHHcCCHHHHHHHHHHhHHhcCCccHHHHHHHHHHCCCCCHHHHHHHcC
Confidence 88889999 899999999999999 9999999999975 3 55789999988899999999999984
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.74 E-value=2.7e-18 Score=222.50 Aligned_cols=171 Identities=18% Similarity=0.190 Sum_probs=122.3
Q ss_pred CcEEEEe-----EEEECCCCCCCccccceeEEecC-------CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 383 GDIELKD-----VNFSYPARPDEQILNGFCLLIPN-------GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 383 ~~i~~~~-----v~f~y~~~~~~~~l~~i~~~i~~-------g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
+.|+++| |++.|++ +..+++|++|++++ |++++|+|||||||||+++.+ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~--~~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFG--DDFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------C--CCCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecC--CceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4599999 9999952 35799999999987 999999999999999999999 98863
Q ss_pred cCCCCHHHHhcceE-EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHH
Q 040099 451 LKEFQLKWIREKIG-LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQK 529 (1236)
Q Consensus 451 ~~~~~~~~~r~~i~-~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqk 529 (1236)
..++| ||||++. ..|+.|||.. + .++.+.+. .+-.++|++++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~-r--------------ig~~d~~~-----------~~~stf~~em~ 857 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFT-R--------------LGASDRIM-----------SGESTFFVELS 857 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEE-E--------------CC--------------------CHHHHHHH
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHH-H--------------cCCHHHHh-----------hchhhhHHHHH
Confidence 24666 9999873 4467777642 1 11112111 11235777776
Q ss_pred HHHHHHHHhcCCCCEEEEeCcCCCCCHHHH-HHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEECCEEE--EEe
Q 040099 530 QRVAIARAMIKDPRILLLDEATSALDSESG-RMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIV--EKG 603 (1236)
Q Consensus 530 qRiaiARal~~~p~ililDE~ts~lD~~~~-~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~--~~g 603 (1236)
+ +++||+++.+|+++||||||+++|+... ..+++.|+.+. + +.|+|++||+++.+.. +|++.++ +|++. ++|
T Consensus 858 ~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~ 935 (1022)
T 2o8b_B 858 E-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVEN 935 (1022)
T ss_dssp H-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC---
T ss_pred H-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEec
Confidence 5 9999999999999999999999999874 55677777764 3 7899999999999875 8998886 58887 555
Q ss_pred Ccc
Q 040099 604 THS 606 (1236)
Q Consensus 604 ~~~ 606 (1236)
+.+
T Consensus 936 ~~~ 938 (1022)
T 2o8b_B 936 ECE 938 (1022)
T ss_dssp ---
T ss_pred Ccc
Confidence 443
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.74 E-value=1.7e-22 Score=235.48 Aligned_cols=226 Identities=12% Similarity=0.012 Sum_probs=157.3
Q ss_pred HHHHHHHHHHHHh-cCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCccccccCCCCC-CCC
Q 040099 304 GLGVWYGAKLILE-KGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRKPEIDLCCVNGKKL-DDI 381 (1236)
Q Consensus 304 ~~~~~~g~~~v~~-g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~~~~~~~~~~~~~~-~~~ 381 (1236)
+.+.+.|++.+.+ |.+|.|++.+|+.++.....| .+......++.+..+.+|+.+++ +|...... ..... ...
T Consensus 49 v~v~~~G~~~~~~~~~lt~~~l~~~~~~~~~~~~~--~l~~~~~~~~~~l~~~~Ri~~vl--~p~~~~~~-~~~~ir~~~ 123 (361)
T 2gza_A 49 VFCERASAWEYYAVPNLDYEHLISLGTATARFVDQ--DISDSRPVLSAILPMGERIQIVR--PPACEHGT-ISVTIRKPS 123 (361)
T ss_dssp EEEEETTEEEEEECTTCCHHHHHHHHHHHHHHTTC--CCSSSSCEEEEECTTSCEEEEEC--TTTBCTTC-CEEEEECCC
T ss_pred EEEEECCeEEEeCCCCCCHHHHHHHHHHHHHHcCC--ccCCCCCeEEEEcCCCcEEEEEe--cCccCCCC-eEEEEEecC
Confidence 3345667777665 889999999998887665444 23333333444455677888887 33322110 00000 011
Q ss_pred CCcE---------EEEeEEEE---CCCCCCCccc---------cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 382 RGDI---------ELKDVNFS---YPARPDEQIL---------NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 382 ~~~i---------~~~~v~f~---y~~~~~~~~l---------~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
.+.+ +|+||+|+ |++. +.++| +++||++++|+.++|+||||||||||+++|+|+++|+
T Consensus 124 ~~~itl~~l~~~g~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~ 202 (361)
T 2gza_A 124 FTRRTLEDYAQQGFFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFD 202 (361)
T ss_dssp CCCCCHHHHHHTTTTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTT
T ss_pred CCCCCHHHHHhcCCcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCC
Confidence 2335 89999999 8631 23455 9999999999999999999999999999999999999
Q ss_pred CcEEEECCeecCCCCHHHHhcceEEEc-cCCCC---CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 441 AGEVLIDGVNLKEFQLKWIREKIGLVS-QEPVL---LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 441 ~G~i~~~g~~~~~~~~~~~r~~i~~v~-Q~~~l---~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
+|.|.++|. .++....+++.++|++ |++.+ +..|+++||.++....++..+..+++.+++.+++..+|.|++|.
T Consensus 203 ~g~I~ie~~--~e~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~ 280 (361)
T 2gza_A 203 QRLITIEDV--PELFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGS 280 (361)
T ss_dssp SCEEEEESS--SCCCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSC
T ss_pred ceEEEECCc--cccCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeE
Confidence 999999975 4555555678899999 88876 67799999998765433333333344456678899999999999
Q ss_pred ccCCCCCCChHHHHHHHHHHH
Q 040099 517 VGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARa 537 (1236)
+++-+.+-..+..+|+.....
T Consensus 281 l~t~H~~~~~~~~~Rl~~l~~ 301 (361)
T 2gza_A 281 ITSCHAGSCELTFERLALMVL 301 (361)
T ss_dssp EEEEECSSHHHHHHHHHHHHT
T ss_pred EEEECCCCHHHHHHHHHHHHh
Confidence 998888888899999987653
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.73 E-value=1.4e-18 Score=225.21 Aligned_cols=172 Identities=15% Similarity=0.115 Sum_probs=122.7
Q ss_pred ccEEEeE-----EEEECCCCCCcccccceeEEecC-------CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1009 GEVQFLR-----VSFKYPTRPHIEVFRDLCLTIPP-------GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1009 g~I~f~~-----Vsf~Y~~~~~~~vL~~is~~I~~-------Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
+.|+++| |++.|++. ..|++|++|++++ |+.++|+|||||||||+++++ |+..+
T Consensus 749 ~~l~i~~~rHP~l~~~~~~~--~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~----------- 814 (1022)
T 2o8b_B 749 PFLELKGSRHPCITKTFFGD--DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAV----------- 814 (1022)
T ss_dssp CCEEEEEECCCC------CC--CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHH-----------
T ss_pred ceEEEEeccccEEEEEecCC--ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHH-----------
Confidence 4699999 99999532 3699999999988 999999999999999999999 99863
Q ss_pred cccCChHHHhcceE-EEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE
Q 040099 1077 IQKLQVKWLRQQMG-VVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI 1155 (1236)
Q Consensus 1077 i~~i~~~~lR~~i~-~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I 1155 (1236)
+.++| +|||++. .-|+.|||....++.+. +..+-..+|+++++ +++||++..+|++
T Consensus 815 ---------~aqiG~~Vpq~~~--~l~v~d~I~~rig~~d~-----------~~~~~stf~~em~~-~a~al~la~~~sL 871 (1022)
T 2o8b_B 815 ---------MAQMGCYVPAEVC--RLTPIDRVFTRLGASDR-----------IMSGESTFFVELSE-TASILMHATAHSL 871 (1022)
T ss_dssp ---------HHTTTCCEESSEE--EECCCSBEEEECC--------------------CHHHHHHHH-HHHHHHHCCTTCE
T ss_pred ---------HhheeEEeccCcC--CCCHHHHHHHHcCCHHH-----------HhhchhhhHHHHHH-HHHHHHhCCCCcE
Confidence 34566 9999973 45666666322222221 11223457777665 9999999999999
Q ss_pred EEEecCCCCCCHHH-HHHHHHHHHHHc-C-CCeEEEEecCchhhhh-cCEEEEEeCCEEE--EecChhH
Q 040099 1156 LLLDEATSALDIES-ERVVQDALDQVM-V-DRTTLVVAHRLSTIKN-AHLIAVVSQGMIV--EKGSHES 1218 (1236)
Q Consensus 1156 LlLDEaTSaLD~~t-e~~I~~~L~~~~-~-~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Iv--e~Gt~~e 1218 (1236)
+||||||+++|+.. ...+++.|+.+. + ++|+|++||.++.+.. +|++.|+ +|++. +.|++++
T Consensus 872 lLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~-~g~~~~~~~~~~~~ 939 (1022)
T 2o8b_B 872 VLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVR-LGHMACMVENECED 939 (1022)
T ss_dssp EEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEE-EEEEEEC-------
T ss_pred EEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceee-cCeEEEEEecCccc
Confidence 99999999999987 455677777764 3 7899999999999875 8999887 58887 5666554
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.73 E-value=3.8e-17 Score=189.26 Aligned_cols=75 Identities=27% Similarity=0.350 Sum_probs=67.6
Q ss_pred CCCCChhHHH------HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhhcCEEEE
Q 040099 1132 GVQLSGGQKQ------RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKNAHLIAV 1204 (1236)
Q Consensus 1132 G~~LSGGQrQ------RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~aD~I~V 1204 (1236)
...||||||| |+++|||++.+|++|||||||++||+.+...+.+.|++.. .++|+|+|||+.+....||+|++
T Consensus 246 ~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~~~~~~d~~~~ 325 (339)
T 3qkt_A 246 LTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEELKDAADHVIR 325 (339)
T ss_dssp GGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGGGGGGCSEEEE
T ss_pred hHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHHHHHhCCEEEE
Confidence 3579999999 6788899999999999999999999999999999998864 46799999999887777999999
Q ss_pred Ee
Q 040099 1205 VS 1206 (1236)
Q Consensus 1205 l~ 1206 (1236)
|+
T Consensus 326 l~ 327 (339)
T 3qkt_A 326 IS 327 (339)
T ss_dssp EE
T ss_pred EE
Confidence 86
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-21 Score=206.07 Aligned_cols=158 Identities=17% Similarity=0.259 Sum_probs=124.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYD-------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
++|++++|+||||||||||+++|+|+++ |..|+ ++|.++...+...+++.+ +|+++++++++
T Consensus 2 ~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~~ 76 (198)
T 1lvg_A 2 AGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAEF 76 (198)
T ss_dssp ---CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEEE
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeeee
Confidence 6899999999999999999999999986 88898 589998888888888876 79999999999
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH-HhcCCCCEEEEeCcCCCCCH
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR-AMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR-al~~~p~ililDE~ts~lD~ 556 (1236)
.+|+ ||. +.++++++++...+.-+ .-.|+|+++.... ++ .|| +++.+|++++|||+|+++|.
T Consensus 77 ~~n~-~g~---~~~~i~~~~~~~~~~~~-~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~ 139 (198)
T 1lvg_A 77 SGNL-YGT---SKEAVRAVQAMNRICVL-DVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNT 139 (198)
T ss_dssp TTEE-EEE---EHHHHHHHHHTTCEEEE-ECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTC
T ss_pred cCcc-CCC---CHHHHHHHHHcCCcEEE-ECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCC
Confidence 9998 764 56788888875332211 1234566665422 12 677 89999999999999999999
Q ss_pred HHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 557 ESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 557 ~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
++++.|++.|.+..++ +.++| ++ ..+|+|+++++
T Consensus 140 ~~e~~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~ 173 (198)
T 1lvg_A 140 ETEESLAKRLAAARTD---MESSK--EP-GLFDLVIINDD 173 (198)
T ss_dssp SCHHHHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS
T ss_pred CCHHHHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC
Confidence 9999999999877554 35677 44 77999988864
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.72 E-value=3.9e-19 Score=196.49 Aligned_cols=162 Identities=14% Similarity=0.145 Sum_probs=105.8
Q ss_pred CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1025 HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1025 ~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
..++|+|+||++++|+.+||+||||||||||+++|.+++ |.+.+| ..++.+++++||++...-|..
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 456999999999999999999999999999999999987 666655 367899999999744445899
Q ss_pred HHHHHHhhh--------------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHH
Q 040099 1105 ANIAEMANA--------------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1105 eNL~~~a~~--------------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
+|+....+. .+.+..+.++.+. ....||+||+||+++ ++++.+|+++|||||....|..
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L~~l~~~~~~----~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~~~~~-- 149 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTLKNIVEGKTV----EVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVFYSQE-- 149 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHHHHHHTTCCE----EECCEETTTTEECSS-CEEECCCSEEEEECTTTTTSHH--
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHHHHHHCCCCe----ecccccccccCccCc-eEEecCCCEEEEeCccccccHH--
Confidence 987532221 1122223222222 234699999999988 6889999999999988877754
Q ss_pred HHHHHHHHHHcCCCeEEEEecCchhh-hh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1171 RVVQDALDQVMVDRTTLVVAHRLSTI-KN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1171 ~~I~~~L~~~~~~~TvI~IaHRl~ti-~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
+.+. .+.|++++||....+ +. ++.+ ++|+ ++++++++
T Consensus 150 ------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~-----~~e~~~~~ 188 (245)
T 2jeo_A 150 ------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR-----DLEQILTQ 188 (245)
T ss_dssp ------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C--------CHHHHHHH
T ss_pred ------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC-----CHHHHHHH
Confidence 2232 378999999974434 43 3334 6675 67777654
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.71 E-value=1.5e-20 Score=200.73 Aligned_cols=159 Identities=15% Similarity=0.220 Sum_probs=120.6
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhh
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT 1102 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gT 1102 (1236)
+++|++++||||||||||||+++|.|+++ |..|+ +||+|+..++.+.+|+.+ +|++++|.+|
T Consensus 1 m~~g~~i~lvGpsGaGKSTLl~~L~~~~~~~~~~~v~~ttr~~~~g~--~~g~~~~~~~~~~~~~~i---~~~~~l~~~~ 75 (198)
T 1lvg_A 1 MAGPRPVVLSGPSGAGKSTLLKKLFQEHSSIFGFSVSHTTRNPRPGE--EDGKDYYFVTREMMQRDI---AAGDFIEHAE 75 (198)
T ss_dssp ----CCEEEECCTTSSHHHHHHHHHHHHTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHHH---HHTCEEEEEE
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHhhCchhceeeeeeeccCCCCcc--cCCceEEEccHHHHHHHH---HcCCCEeeee
Confidence 36899999999999999999999999996 78897 699999999999999876 7999999988
Q ss_pred HHHHHH--------HHhhh--chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHH-HHccCCCEEEEecCCCCCCHHHHH
Q 040099 1103 IRANIA--------EMANA--NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIAR-AIVKEPKILLLDEATSALDIESER 1171 (1236)
Q Consensus 1103 IreNL~--------~~a~~--~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLAR-ALlr~p~ILlLDEaTSaLD~~te~ 1171 (1236)
+++|+. +.+.. .....-.|+|+++.... ++ .|| +++++|++++|||+|+++|.+||+
T Consensus 76 ~~~n~~g~~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~-----------~~-~~~~~~l~~p~~~ilde~~~~~d~~~e~ 143 (198)
T 1lvg_A 76 FSGNLYGTSKEAVRAVQAMNRICVLDVDLQGVRSIKKT-----------DL-CPIYIFVQPPSLDVLEQRLRLRNTETEE 143 (198)
T ss_dssp ETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHTTS-----------SC-CCEEEEEECSCHHHHHHHHHHHTCSCHH
T ss_pred ecCccCCCCHHHHHHHHHcCCcEEEECCHHHHHHHHhc-----------CC-CcEEEEEeCCCHHHHHHHHHhcCCCCHH
Confidence 877751 11111 00112236777776432 12 677 899999999999999999999999
Q ss_pred HHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhh
Q 040099 1172 VVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIS 1221 (1236)
Q Consensus 1172 ~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~ 1221 (1236)
.|++.|.+..++ +.++| ++ ..||+|+|+++ -..+.++|.+
T Consensus 144 ~i~~~l~~~~~~---~~~a~--~~-~~~D~iivnd~----le~a~~~l~~ 183 (198)
T 1lvg_A 144 SLAKRLAAARTD---MESSK--EP-GLFDLVIINDD----LDKAYATLKQ 183 (198)
T ss_dssp HHHHHHHHHHHH---TTGGG--ST-TTCSEEEECSS----HHHHHHHHHH
T ss_pred HHHHHHHHHHHH---HHHhh--cc-CCceEEEECCC----HHHHHHHHHH
Confidence 999999877554 46788 55 88999999875 2345555544
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.71 E-value=1.1e-17 Score=205.16 Aligned_cols=152 Identities=18% Similarity=0.103 Sum_probs=118.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh-cCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA-YGK 485 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~g~ 485 (1236)
+..+++|++++|+||||||||||++.++|...|. |+ +.+.|++|++ ..++.+|.. +|.
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~-----------------~vi~~~~ee~---~~~l~~~~~~~g~ 333 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE-----------------RAILFAYEES---RAQLLRNAYSWGM 333 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC-----------------CEEEEESSSC---HHHHHHHHHTTSC
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC-----------------CEEEEEEeCC---HHHHHHHHHHcCC
Confidence 4589999999999999999999999999998875 53 1256677776 235555543 221
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHH-----HHH
Q 040099 486 THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE-----SGR 560 (1236)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~-----~~~ 560 (1236)
+.++ +. . .|+..........|||||+||+++||++..+|++||+| ||++||.. ..+
T Consensus 334 ---~~~~------------~~-~--~g~~~~~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~~~~~~ 394 (525)
T 1tf7_A 334 ---DFEE------------ME-R--QNLLKIVCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSNNAFRQ 394 (525)
T ss_dssp ---CHHH------------HH-H--TTSEEECCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCHHHHHH
T ss_pred ---CHHH------------HH-h--CCCEEEEEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCChHHHHH
Confidence 2111 11 1 13334445556789999999999999999999999999 99999999 888
Q ss_pred HHHHHHHHHc-cCceEEEEecCc----------hhHhh-cCeEEEEECCE
Q 040099 561 MVQEALDRVM-INRTTVIVSHRL----------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 561 ~i~~~l~~~~-~~~t~i~itH~~----------~~~~~-ad~i~vl~~G~ 598 (1236)
.+.+.++.+. .|.|+|+++|+. ..+.. ||+|++|++|+
T Consensus 395 ~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 395 FVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 8888887764 478999999998 66665 99999999987
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.70 E-value=4.9e-17 Score=194.78 Aligned_cols=73 Identities=21% Similarity=0.318 Sum_probs=67.7
Q ss_pred CCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhhcCeEEEEE
Q 040099 523 QLSGGQKQRVAIARAMI----KDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRNANIIAVIQ 595 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~ad~i~vl~ 595 (1236)
.||||||||++|||+|+ .+|+++||||||++||+.....+.+.|+++.+ +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999998754 679999999988888899999986
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=4.7e-17 Score=163.89 Aligned_cols=88 Identities=26% Similarity=0.335 Sum_probs=75.6
Q ss_pred Cccccc-----cCCCCCCChHHHHHHHHH------HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEe
Q 040099 512 GLDTNV-----GEHGIQLSGGQKQRVAIA------RAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVS 579 (1236)
Q Consensus 512 g~~t~~-----g~~g~~LSgGqkqRiaiA------Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~it 579 (1236)
+++..+ .....+||||||||++|| ||++.+|+++||||||++||+.+...+.+.+.++. +++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 566554 345678999999999876 99999999999999999999999999999999875 478999999
Q ss_pred cCchhHhhcCeEEEE--ECCEE
Q 040099 580 HRLSLIRNANIIAVI--QQGKI 599 (1236)
Q Consensus 580 H~~~~~~~ad~i~vl--~~G~i 599 (1236)
|++.....||++++| ++|..
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~s 142 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGSS 142 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTEE
T ss_pred ChHHHHHhCCEEEEEEcCCCeE
Confidence 999666679999999 45643
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.8e-18 Score=210.96 Aligned_cols=159 Identities=19% Similarity=0.222 Sum_probs=120.6
Q ss_pred CCcEEEEeEEEECCCC--CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEECCeecCCCCHHH
Q 040099 382 RGDIELKDVNFSYPAR--PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-PQAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~g~~~~~~~~~~ 458 (1236)
.+.|++++. ++|-- ++..+++|+||+ |++++|+|||||||||++|+++|+.. ++.|.+.- .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~vp-----------a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFVP-----------A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCBS-----------S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCceee-----------h
Confidence 456899988 44421 235799999999 99999999999999999999999874 77887521 1
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
.+..+++++| +|.. ++.||+.. .+|+|++|++.+|++
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~---------------------------------------g~S~~~~e~~~la~i 649 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG---------------------------------------GKSTFMVEMEEVALI 649 (765)
T ss_dssp SEEEECCCSE---EEEECCC---------------------------------------------CCSHHHHHHHHHHHH
T ss_pred hccceeeHHH---hhccCCHHHHHHh---------------------------------------cccHHHHHHHHHHHH
Confidence 1456888887 4543 66666543 268999999999999
Q ss_pred h--cCCCCEEEEeCc---CCCCCHHHH-HHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEE
Q 040099 538 M--IKDPRILLLDEA---TSALDSESG-RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEK 602 (1236)
Q Consensus 538 l--~~~p~ililDE~---ts~lD~~~~-~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~ 602 (1236)
+ +.+|+++||||| ||+||+.+. ..+.+.|.+ .+.|+|++||+.+....| .-.+.++++...
T Consensus 650 l~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~--~~~v~n~~~~~~ 716 (765)
T 1ewq_A 650 LKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG--LPRLKNLHVAAR 716 (765)
T ss_dssp HHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC--CTTEEEEEEEEE
T ss_pred HHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh--hhcceEEEEEEE
Confidence 9 999999999999 999999876 468888876 589999999998877655 223456665544
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=9.2e-19 Score=193.50 Aligned_cols=160 Identities=14% Similarity=0.164 Sum_probs=102.1
Q ss_pred CCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHH
Q 040099 399 DEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478 (1236)
Q Consensus 399 ~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 478 (1236)
++++|+|+||++++|+++||+||||||||||+++|.|++ |.+.++ ..++.++|++|++....-|+.
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~----------~~~~~i~~v~~d~~~~~l~~~ 76 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE----------QRQRKVVILSQDRFYKVLTAE 76 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC----------GGGCSEEEEEGGGGBCCCCHH
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc----------ccCCceEEEeCCcCccccCHh
Confidence 457999999999999999999999999999999999976 555544 357789999999743345899
Q ss_pred HHHhcCCCC--------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 479 DNIAYGKTH--------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 479 ~ni~~g~~~--------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
+|+.+.... ...+++.+.+ ..+.++.+..+ ..||+||+||+++ ++++.+|+++|||||
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~L---------~~l~~~~~~~~----~~ls~g~~~r~~~-~~~~~~~~~lilDg~ 142 (245)
T 2jeo_A 77 QKAKALKGQYNFDHPDAFDNDLMHRTL---------KNIVEGKTVEV----PTYDFVTHSRLPE-TTVVYPADVVLFEGI 142 (245)
T ss_dssp HHHHHHTTCCCTTSGGGBCHHHHHHHH---------HHHHTTCCEEE----CCEETTTTEECSS-CEEECCCSEEEEECT
T ss_pred HhhhhhccCCCCCCcccccHHHHHHHH---------HHHHCCCCeec----ccccccccCccCc-eEEecCCCEEEEeCc
Confidence 998753211 1122222222 22222333333 4799999999998 699999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH-hh-cCeEEEEECCE
Q 040099 551 TSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI-RN-ANIIAVIQQGK 598 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~-ad~i~vl~~G~ 598 (1236)
....|.. +.++ .+.|++++||....+ +. ++++ ++|+
T Consensus 143 ~~~~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~---~~G~ 180 (245)
T 2jeo_A 143 LVFYSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV---RRGR 180 (245)
T ss_dssp TTTTSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT---C---
T ss_pred cccccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH---HcCC
Confidence 8888764 2222 378999999974433 43 4444 6664
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.5e-16 Score=203.62 Aligned_cols=168 Identities=18% Similarity=0.160 Sum_probs=122.3
Q ss_pred CcEEEEeEEEECCCC--CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHH--------HcCCCCCCcEEEECCeecC
Q 040099 383 GDIELKDVNFSYPAR--PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI--------QRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~--~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll--------~~~~~~~~G~i~~~g~~~~ 452 (1236)
+.+++++...-+-.. ++..+++|++|++++|++++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888876544221 235799999999999999999999999999999999 66665654322
Q ss_pred CCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 453 EFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 453 ~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
++++. .+|. .+| +.+.+ ...+|+|++++.
T Consensus 702 ----------~~~~d---~i~~-------~ig-----------------~~d~l--------------~~~lStf~~e~~ 730 (934)
T 3thx_A 702 ----------VSIVD---CILA-------RVG-----------------AGDSQ--------------LKGVSTFMAEML 730 (934)
T ss_dssp ----------EECCS---EEEE-------ECC----------------------------------------CHHHHHHH
T ss_pred ----------chHHH---HHHH-------hcC-----------------chhhH--------------HHhHhhhHHHHH
Confidence 11110 0110 001 00111 125788888888
Q ss_pred HHHHHh--cCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccc
Q 040099 533 AIARAM--IKDPRILLLDEATSALDSESGRMV-QEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSE 607 (1236)
Q Consensus 533 aiARal--~~~p~ililDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~ 607 (1236)
.+|+++ +.+|+++||||||+++|+.....+ ...++.+. .|.|+|++||+.+....||++..+++|++...++.++
T Consensus 731 ~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~ 810 (934)
T 3thx_A 731 ETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEET 810 (934)
T ss_dssp HHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTE
T ss_pred HHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCc
Confidence 888888 999999999999999999988777 45555554 3789999999988888899999999999999888777
Q ss_pred cc
Q 040099 608 LL 609 (1236)
Q Consensus 608 l~ 609 (1236)
+.
T Consensus 811 l~ 812 (934)
T 3thx_A 811 LT 812 (934)
T ss_dssp EE
T ss_pred EE
Confidence 64
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-18 Score=199.67 Aligned_cols=167 Identities=20% Similarity=0.196 Sum_probs=120.5
Q ss_pred ccccce-eEEecCCcEEEEEcCCCCcHHHHHHHHHcCC--CCCC----cE-EEECCeecCCCCHHHHhcceEEEccCCCC
Q 040099 401 QILNGF-CLLIPNGTIAALVGTSGSGKSTVISLIQRFY--DPQA----GE-VLIDGVNLKEFQLKWIREKIGLVSQEPVL 472 (1236)
Q Consensus 401 ~~l~~i-~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~--~~~~----G~-i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 472 (1236)
+.|+++ ++.|++|++++|+||||||||||++.+++.+ +|++ |+ |++++.+.. .++++++++|++.+
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~ 191 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGL 191 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTC
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCC
Confidence 467776 6899999999999999999999999999998 6666 68 899987641 24678999999988
Q ss_pred CchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-------CCCCEE
Q 040099 473 LSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI-------KDPRIL 545 (1236)
Q Consensus 473 ~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~-------~~p~il 545 (1236)
+..++.+||.+.... + |++|+|++.++++++ .+|+++
T Consensus 192 ~~~~v~~ni~~~~~~-~-----------------------------------~~~~~~~l~~~~~~~~~lS~G~~~~~ll 235 (349)
T 1pzn_A 192 DPDEVLKHIYVARAF-N-----------------------------------SNHQMLLVQQAEDKIKELLNTDRPVKLL 235 (349)
T ss_dssp CHHHHGGGEEEEECC-S-----------------------------------HHHHHHHHHHHHHHHHHSSSSSSCEEEE
T ss_pred CHHHHhhCEEEEecC-C-----------------------------------hHHHHHHHHHHHHHHHHhccccCCCCEE
Confidence 888999999876432 1 345666666666666 789999
Q ss_pred EEeCcCCCCCHHH------------HHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 546 LLDEATSALDSES------------GRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 546 ilDE~ts~lD~~~------------~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|+||||+.+|++. ...+...|.++. .+.|+|+++|....... ++.+.+...|++++.+.+..|.
T Consensus 236 IlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 236 IVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp EEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred EEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 9999999999862 234444555543 37899999998775543 3456777889888888777664
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.4e-19 Score=208.83 Aligned_cols=176 Identities=15% Similarity=0.146 Sum_probs=115.7
Q ss_pred cccceeEEecC--CcEEEEEcCCCCcHHHHHHHHHcCCCCCC----cEEEE----CCeecCCCCHHHHhcceEEEccCCC
Q 040099 402 ILNGFCLLIPN--GTIAALVGTSGSGKSTVISLIQRFYDPQA----GEVLI----DGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 402 ~l~~i~~~i~~--g~~~~ivG~sGsGKSTl~~ll~~~~~~~~----G~i~~----~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+.+.|+++|++ |++++|+||||||||||+++|+|+++|++ |+|++ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 46789999999 99999999999999999999999999999 99987 35555 4455555 56999999998
Q ss_pred CCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc-CCCCEEEEeC-
Q 040099 472 LLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI-KDPRILLLDE- 549 (1236)
Q Consensus 472 l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~-~~p~ililDE- 549 (1236)
+|..|++|||.++.....+..... +|+|++||..+++++. .+|++++|||
T Consensus 235 ~~~~t~~~nl~~~~~~~~~~~~~~----------------------------~~~~~~~~~~i~~~~~~~~~~lllLdE~ 286 (365)
T 1lw7_A 235 DYAVRHSHKIAFIDTDFITTQAFC----------------------------IQYEGKAHPFLDSMIKEYPFDVTILLKN 286 (365)
T ss_dssp HHHHHHCSSEEEESSCHHHHHHHH----------------------------HHHHSCCCHHHHHHHHHSCCSEEEEEEC
T ss_pred HHHHhccCCEEEEeCCchHHHHHH----------------------------HHHcCCCCHHHHHHHhhcCCCEEEECCC
Confidence 999999999998764322222221 3344455666666553 4666666666
Q ss_pred --cC------CCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccc
Q 040099 550 --AT------SALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 550 --~t------s~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
|+ +++|+.....+.+.|.++.+ +.|+++++|.-..-+.+|++.++++ +++.|+.+||.
T Consensus 287 ~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~ 354 (365)
T 1lw7_A 287 NTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQ 354 (365)
T ss_dssp CCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCC
T ss_pred CCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhh
Confidence 43 45666666666666655433 5666666654222233455544432 33344455553
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.68 E-value=8e-19 Score=217.85 Aligned_cols=190 Identities=17% Similarity=0.272 Sum_probs=125.2
Q ss_pred cEEEeEEEEECCCCCCcccccce----------eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeecc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDL----------CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQ 1078 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~i----------s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~ 1078 (1236)
.++++|+++.|+.. ..++|+.+ +++++. +|||||||||||||+++|.|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 57899999999642 12345444 467765 999999999999999999999988 7999999999963
Q ss_pred cC---ChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1079 KL---QVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1079 ~i---~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
.. ....+|+++++++|++.+++ .||++|+....... +..+..+| ++++.++++...+|+
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~~~~--------------~~~~~~~s---~~~i~l~i~~~~~p~ 148 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQNAI--------------AGEGMGIS---HELITLEISSRDVPD 148 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHHHHH--------------HCSSSCCC---SCCEEEEEEESSSCC
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHHHHh--------------cCCccccc---hHHHHHHhcCCCCCc
Confidence 22 24568899999999998775 59999996433221 11112223 244555566667899
Q ss_pred EEEEecC------CCCCCHHHHHHHHHHHHHHcC---CCeEEEEecCchhh--------hh-----cCEEEEEeCCEEEE
Q 040099 1155 ILLLDEA------TSALDIESERVVQDALDQVMV---DRTTLVVAHRLSTI--------KN-----AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1155 ILlLDEa------TSaLD~~te~~I~~~L~~~~~---~~TvI~IaHRl~ti--------~~-----aD~I~Vl~~G~Ive 1212 (1236)
++++||| |++||+.+...+.+.++++.+ +.++++++|.++.. +. ...|.|+.++.+++
T Consensus 149 LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 149 LTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPEGDRTIGILTKPDLVD 228 (608)
T ss_dssp EEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSSCCSEEEEEECGGGSS
T ss_pred eeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhcCCceEEEecchhhcC
Confidence 9999999 999999999999999998643 34677789997632 22 35799999999999
Q ss_pred ecChhHHh
Q 040099 1213 KGSHESLI 1220 (1236)
Q Consensus 1213 ~Gt~~eLl 1220 (1236)
.|++++++
T Consensus 229 ~g~~~~~~ 236 (608)
T 3szr_A 229 KGTEDKVV 236 (608)
T ss_dssp SSSTTCCC
T ss_pred cccHHHHH
Confidence 99876554
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=1.2e-17 Score=182.42 Aligned_cols=147 Identities=20% Similarity=0.272 Sum_probs=103.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-------CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDP-------QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNI 481 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-------~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni 481 (1236)
.+++|++++|+||||||||||+++|+|.+.| ..|.+++++.+. .+ ++++++++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 6899999999999999999999999996665 445788887542 11 2457788898888888999999
Q ss_pred hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh-------cCCCCEEEEeCcCCCC
Q 040099 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM-------IKDPRILLLDEATSAL 554 (1236)
Q Consensus 482 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal-------~~~p~ililDE~ts~l 554 (1236)
.+..+....+ |++++..++++ ..+|++++|||||+.+
T Consensus 95 ~~~~~~~~~~------------------------------------~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l 138 (231)
T 4a74_A 95 YVARAFNSNH------------------------------------QMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHF 138 (231)
T ss_dssp EEEECCSHHH------------------------------------HHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHH
T ss_pred EEEecCChHH------------------------------------HHHHHHHHHHHHHHhcccCCceeEEEECChHHHh
Confidence 8764432111 11112222222 3589999999999999
Q ss_pred CHH-------HH-----HHHHHHHHHHc--cCceEEEEecCc----hhHhh-cCeEEEEECC
Q 040099 555 DSE-------SG-----RMVQEALDRVM--INRTTVIVSHRL----SLIRN-ANIIAVIQQG 597 (1236)
Q Consensus 555 D~~-------~~-----~~i~~~l~~~~--~~~t~i~itH~~----~~~~~-ad~i~vl~~G 597 (1236)
|++ .+ ..+.+.|.++. .|.|+|+++|.. ..+.+ ||++++|++|
T Consensus 139 ~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 139 RSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred ccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 984 22 25666666553 378999999944 44765 9999999875
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.67 E-value=1e-16 Score=161.42 Aligned_cols=87 Identities=23% Similarity=0.297 Sum_probs=74.6
Q ss_pred chhhhh-----cCCCCCCChhHHHHHHHH------HHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEe
Q 040099 1123 GYDTLV-----GERGVQLSGGQKQRVAIA------RAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVA 1190 (1236)
Q Consensus 1123 Gldt~v-----ge~G~~LSGGQrQRlaLA------RALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~Ia 1190 (1236)
+|+..+ .....+||||||||++|| |||+++|++|||||||++||+++...+.+.|++.. .++|+|+||
T Consensus 41 ~~~l~~~~~~~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivs 120 (148)
T 1f2t_B 41 KVRLFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVS 120 (148)
T ss_dssp SEEEEEEETTEEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEE
T ss_pred ceEEEeccccccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEE
Confidence 565554 244578999999999876 99999999999999999999999999999999864 478999999
Q ss_pred cCchhhhhcCEEEEE--eCCE
Q 040099 1191 HRLSTIKNAHLIAVV--SQGM 1209 (1236)
Q Consensus 1191 HRl~ti~~aD~I~Vl--~~G~ 1209 (1236)
|+++....||+|++| ++|.
T Consensus 121 H~~~~~~~~d~ii~l~~~~g~ 141 (148)
T 1f2t_B 121 HDEELKDAADHVIRISLENGS 141 (148)
T ss_dssp SCGGGGGGCSEEEEEEEETTE
T ss_pred ChHHHHHhCCEEEEEEcCCCe
Confidence 999766679999999 4564
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3e-19 Score=192.66 Aligned_cols=140 Identities=14% Similarity=0.147 Sum_probs=108.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc---hhHHHHHhcC--
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS---SSIRDNIAYG-- 484 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~ti~~ni~~g-- 484 (1236)
.++|+++||+||||||||||+++|.|++.| +++|++|++.+++ -|+++|+.+.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~~ 60 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNYD 60 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCTT
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCCC
Confidence 578999999999999999999999999865 5899999998874 3787776653
Q ss_pred CCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH----HHHHHHHHHhcCCCCEEEEeCcCCC------
Q 040099 485 KTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ----KQRVAIARAMIKDPRILLLDEATSA------ 553 (1236)
Q Consensus 485 ~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq----kqRiaiARal~~~p~ililDE~ts~------ 553 (1236)
.+. ...+.+.++++..++.+++ ...+..+|+|| +||+++||+++.+|+++++||||++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~-----------~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i 129 (211)
T 3asz_A 61 HPDAFDLALYLEHAQALLRGLPV-----------EMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKV 129 (211)
T ss_dssp SGGGBCHHHHHHHHHHHHTTCCE-----------EECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEE
T ss_pred ChhhhhHHHHHHHHHHHHcCCCc-----------CCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEE
Confidence 222 2345666666555433322 22345677775 5799999999999999999999999
Q ss_pred -CCHHHHHHHHHHHHHH--ccCceEEEEecCc
Q 040099 554 -LDSESGRMVQEALDRV--MINRTTVIVSHRL 582 (1236)
Q Consensus 554 -lD~~~~~~i~~~l~~~--~~~~t~i~itH~~ 582 (1236)
||+.++..+.+.+.+. .+|+|++.++|+.
T Consensus 130 ~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 130 FVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999988775 2588999999984
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.67 E-value=3.5e-17 Score=205.98 Aligned_cols=147 Identities=20% Similarity=0.179 Sum_probs=115.3
Q ss_pred cccEEEeEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-CCCcEEEECCeecccCChHH
Q 040099 1008 MGEVQFLRVSFKYPTR--PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-PSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1008 ~g~I~f~~Vsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-~~~G~I~idG~di~~i~~~~ 1084 (1236)
.+.|++++. ++|-- .+..+++|+||+ |+.++|+|||||||||+++++.++.. ++.|.+. + .
T Consensus 548 ~~~i~i~~~--rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p--a 611 (765)
T 1ewq_A 548 GDRLQIRAG--RHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P--A 611 (765)
T ss_dssp SSSEEEEEE--CCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S--S
T ss_pred CCcEEEEEe--ECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e--h
Confidence 567888887 55531 134699999999 99999999999999999999999974 6778652 1 1
Q ss_pred HhcceEEEcCCCCCChh-hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecC
Q 040099 1085 LRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKILLLDEA 1161 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~g-TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILlLDEa 1161 (1236)
.+.++++++| +|.. ++.||+.. .+|+|++|++.+|+++ +.+|+++|||||
T Consensus 612 ~~~~i~~v~~---i~~~~~~~d~l~~------------------------g~S~~~~e~~~la~il~~a~~p~LlLLDEp 664 (765)
T 1ewq_A 612 EEAHLPLFDG---IYTRIGASDDLAG------------------------GKSTFMVEMEEVALILKEATENSLVLLDEV 664 (765)
T ss_dssp SEEEECCCSE---EEEECCC------------------------------CCSHHHHHHHHHHHHHHHCCTTEEEEEEST
T ss_pred hccceeeHHH---hhccCCHHHHHHh------------------------cccHHHHHHHHHHHHHHhccCCCEEEEECC
Confidence 2467888887 5543 77777621 2689999999999999 999999999999
Q ss_pred ---CCCCCHHHH-HHHHHHHHHHcCCCeEEEEecCchhhhhc
Q 040099 1162 ---TSALDIESE-RVVQDALDQVMVDRTTLVVAHRLSTIKNA 1199 (1236)
Q Consensus 1162 ---TSaLD~~te-~~I~~~L~~~~~~~TvI~IaHRl~ti~~a 1199 (1236)
||++|..+. ..+.+.|.+ .++|+|++||+.+....+
T Consensus 665 grGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~~~~ 704 (765)
T 1ewq_A 665 GRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELTALG 704 (765)
T ss_dssp TTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHHTCC
T ss_pred CCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHHHhh
Confidence 999999886 578888877 589999999998876544
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.66 E-value=3.7e-18 Score=197.80 Aligned_cols=166 Identities=20% Similarity=0.191 Sum_probs=120.6
Q ss_pred cccce-eEEecCCCEEEEEcCCCCChHHHHHHHhccc--CCCC----cE-EEECCeecccCChHHHhcceEEEcCCCCCC
Q 040099 1028 VFRDL-CLTIPPGKTIALVGESGSGKSTVISLLQRFY--DPSS----GH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLF 1099 (1236)
Q Consensus 1028 vL~~i-s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~--~~~~----G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF 1099 (1236)
.|+.+ ++.|++|+.++|+||+|||||||++.|.+.+ +|++ |. |+||+.+.- .++++++++|++.++
T Consensus 119 ~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~------~~~~i~~i~q~~~~~ 192 (349)
T 1pzn_A 119 SLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF------RPERIREIAQNRGLD 192 (349)
T ss_dssp HHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC------CHHHHHHHHHTTTCC
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC------CHHHHHHHHHHcCCC
Confidence 46665 6899999999999999999999999999998 6665 68 999997651 256788999999999
Q ss_pred hhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc-------cCCCEEEEecCCCCCCHHH---
Q 040099 1100 SDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV-------KEPKILLLDEATSALDIES--- 1169 (1236)
Q Consensus 1100 ~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl-------r~p~ILlLDEaTSaLD~~t--- 1169 (1236)
..++.+|+. .. ..+ -|.+|+|++.++++++ .+|++||+||||+.+|++.
T Consensus 193 ~~~v~~ni~-~~----------~~~----------~~~~~~~~l~~~~~~~~~lS~G~~~~~llIlDs~ta~ld~~~~~~ 251 (349)
T 1pzn_A 193 PDEVLKHIY-VA----------RAF----------NSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGR 251 (349)
T ss_dssp HHHHGGGEE-EE----------ECC----------SHHHHHHHHHHHHHHHHHSSSSSSCEEEEEEETSSTTHHHHCCST
T ss_pred HHHHhhCEE-EE----------ecC----------ChHHHHHHHHHHHHHHHHhccccCCCCEEEEeCchHhhhhhhccc
Confidence 888888762 10 001 1568999999999999 6899999999999999863
Q ss_pred ----H-----HHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1170 ----E-----RVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1170 ----e-----~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
+ ..+.+.|++.. .++|+|+++|....... ++.+.+...|++++++++..|.
T Consensus 252 ~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~~~~~~~~~~~~G~~l~~~~~~rL~ 314 (349)
T 1pzn_A 252 GALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPDAFFGDPTRPIGGHILAHSATLRVY 314 (349)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC---------------CCCCCTTCSEEEE
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccccccCCccccCCcceEeecCcEEEE
Confidence 1 33344444443 37899999998876543 3456778889999988877774
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.4e-19 Score=210.78 Aligned_cols=133 Identities=19% Similarity=0.136 Sum_probs=108.7
Q ss_pred EEeEEEEE---CCCCCCcccc---------cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1012 QFLRVSFK---YPTRPHIEVF---------RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1012 ~f~~Vsf~---Y~~~~~~~vL---------~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
+|++|+|+ |++. +.++| +++||+|++|+.++|+||||||||||+++|.|+++|++|.|+++|. .+
T Consensus 137 ~f~~v~f~~~~Y~~~-~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~--~e 213 (361)
T 2gza_A 137 FFKHVRPMSKSLTPF-EQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDV--PE 213 (361)
T ss_dssp TTSCCCCSCSCCCHH-HHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESS--SC
T ss_pred CcCccccccccccch-hHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCc--cc
Confidence 89999999 9642 23455 9999999999999999999999999999999999999999999985 46
Q ss_pred CChHHHhcceEEEc-CCCCC---ChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHH
Q 040099 1080 LQVKWLRQQMGVVS-QEPVL---FSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140 (1236)
Q Consensus 1080 i~~~~lR~~i~~V~-Qdp~L---F~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr 1140 (1236)
+....+|+.+++++ |++.+ +..|+++||. +.+.+++++..+|.|++|.+++-+.+-..+..
T Consensus 214 ~~~~~~~~~v~~v~~q~~~~~~~~~~t~~~~i~~~l~~~pd~~l~~e~r~~~~~~~l~~l~~g~~~~l~t~H~~~~~~~~ 293 (361)
T 2gza_A 214 LFLPDHPNHVHLFYPSEAKEEENAPVTAATLLRSCLRMKPTRILLAELRGGEAYDFINVAASGHGGSITSCHAGSCELTF 293 (361)
T ss_dssp CCCTTCSSEEEEECC----------CCHHHHHHHHTTSCCSEEEESCCCSTHHHHHHHHHHTTCCSCEEEEECSSHHHHH
T ss_pred cCccccCCEEEEeecCccccccccccCHHHHHHHHHhcCCCEEEEcCchHHHHHHHHHHHhcCCCeEEEEECCCCHHHHH
Confidence 66666788999999 99886 7889999996 22456678999999999999887777788899
Q ss_pred HHHHHHH
Q 040099 1141 QRVAIAR 1147 (1236)
Q Consensus 1141 QRlaLAR 1147 (1236)
+|+....
T Consensus 294 ~Rl~~l~ 300 (361)
T 2gza_A 294 ERLALMV 300 (361)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9998765
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.66 E-value=3.1e-16 Score=200.67 Aligned_cols=168 Identities=13% Similarity=0.101 Sum_probs=120.4
Q ss_pred ccEEEeEEEEECCCC--CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHH--------hcccCCCCcEEEECCeecc
Q 040099 1009 GEVQFLRVSFKYPTR--PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLL--------QRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~--~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL--------~r~~~~~~G~I~idG~di~ 1078 (1236)
+.|++++...-+-.. ....|++|++|++++|+.++|+|||||||||+++++ .|.+-|.++..
T Consensus 630 ~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~-------- 701 (934)
T 3thx_A 630 GRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE-------- 701 (934)
T ss_dssp CEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE--------
T ss_pred cceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc--------
Confidence 458888765444221 134689999999999999999999999999999999 55555543321
Q ss_pred cCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEE
Q 040099 1079 KLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKIL 1156 (1236)
Q Consensus 1079 ~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~IL 1156 (1236)
++++. .+|. ..++.+ .-...+|+|++++..+|+++ +.+|+++
T Consensus 702 ----------~~~~d---~i~~---------~ig~~d--------------~l~~~lStf~~e~~~~a~il~~a~~~sLl 745 (934)
T 3thx_A 702 ----------VSIVD---CILA---------RVGAGD--------------SQLKGVSTFMAEMLETASILRSATKDSLI 745 (934)
T ss_dssp ----------EECCS---EEEE---------ECC-----------------------CHHHHHHHHHHHHHHHCCTTCEE
T ss_pred ----------chHHH---HHHH---------hcCchh--------------hHHHhHhhhHHHHHHHHHHHHhccCCcEE
Confidence 11100 0110 000000 01134788888888888888 9999999
Q ss_pred EEecCCCCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHh
Q 040099 1157 LLDEATSALDIESERVV-QDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I-~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
||||||+++|+.....+ +..++.+. .++|+|++||..+....||++..+.+|++...++++++.
T Consensus 746 LLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el~~lad~~~~v~ng~v~~~~~~~~l~ 812 (934)
T 3thx_A 746 IIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHELTALANQIPTVNNLHVTALTTEETLT 812 (934)
T ss_dssp EEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGGGGGGGTCTTEEEEEEEEEEETTEEE
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHHHHHhcccceeEeeEEEEEecCCcEE
Confidence 99999999999887777 55555543 389999999998888889999999999999888877653
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.66 E-value=2.7e-16 Score=188.35 Aligned_cols=73 Identities=23% Similarity=0.325 Sum_probs=67.7
Q ss_pred CCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhhcCEEEEEe
Q 040099 1134 QLSGGQKQRVAIARAIV----KEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1134 ~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~aD~I~Vl~ 1206 (1236)
.||||||||++|||+|. ++|++|||||||++||+.+...+.+.|++... +.++|+|||+...+..||+++++.
T Consensus 333 ~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~~~~~d~~~~~~ 410 (430)
T 1w1w_A 333 YLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGVY 410 (430)
T ss_dssp GSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEEE
T ss_pred cCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHhCCEEEEEE
Confidence 49999999999999999 68999999999999999999999999988753 679999999988888899999986
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=2.4e-17 Score=190.52 Aligned_cols=147 Identities=21% Similarity=0.278 Sum_probs=110.2
Q ss_pred eEEEEECCCCCCcccccceeE-------EecCCCEEEEEcCCCCChHHHHHHHhcccCCC-CcEEEECCeecccCChHHH
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCL-------TIPPGKTIALVGESGSGKSTVISLLQRFYDPS-SGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~-------~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~-~G~I~idG~di~~i~~~~l 1085 (1236)
.+++++|... ..+.|+++.+ .+.+|+.++|+|||||||||++++|.|+++|+ +|.|...+.++ ++. +
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5788888543 3467888887 78899999999999999999999999999987 57765544333 222 2
Q ss_pred hcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaL 1165 (1236)
+...++++|.+.-... ++-.+ +|||||..+|++|++||||
T Consensus 167 ~~~~~~v~q~~~~~~~---------------------------------~~~~~----~La~aL~~~PdvillDEp~--- 206 (356)
T 3jvv_A 167 ESKKCLVNQREVHRDT---------------------------------LGFSE----ALRSALREDPDIILVGEMR--- 206 (356)
T ss_dssp CCSSSEEEEEEBTTTB---------------------------------SCHHH----HHHHHTTSCCSEEEESCCC---
T ss_pred hccccceeeeeecccc---------------------------------CCHHH----HHHHHhhhCcCEEecCCCC---
Confidence 3445667775432110 11111 9999999999999999999
Q ss_pred CHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCC
Q 040099 1166 DIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQG 1208 (1236)
Q Consensus 1166 D~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G 1208 (1236)
|.++...+.++ ...|+|+|+++|..+.+..+||+++|..|
T Consensus 207 d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 207 DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 78876665554 33589999999999999889999888554
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.65 E-value=3.8e-17 Score=185.05 Aligned_cols=149 Identities=23% Similarity=0.244 Sum_probs=103.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHH--hcceEEEccCCCCCch-hHHHHHhcC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWI--REKIGLVSQEPVLLSS-SIRDNIAYG 484 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~--r~~i~~v~Q~~~l~~~-ti~~ni~~g 484 (1236)
+|++++|+|||||||||+++.|+|+++|++|+|.++|.|+.... ...+ |..++||+|++.+++. ++++|+.++
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 1222 4579999999988764 899998753
Q ss_pred CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCCCCHHHHHHH
Q 040099 485 KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 485 ~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~lD~~~~~~i 562 (1236)
.. .+.+..+-..+...+. ....++..+|||++||||+..+|+ +|.|| |+++.| +
T Consensus 181 ~~-------------~~~d~~llDt~G~~~~----~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~ 236 (304)
T 1rj9_A 181 KA-------------RGYDLLFVDTAGRLHT----KHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------G 236 (304)
T ss_dssp HH-------------HTCSEEEECCCCCCTT----CHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------H
T ss_pred Hh-------------CCCCEEEecCCCCCCc----hHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------H
Confidence 10 0111111111111111 112256677999999999999999 55555 444443 3
Q ss_pred HHHHHHHc--cCceEEEEecCchh
Q 040099 563 QEALDRVM--INRTTVIVSHRLSL 584 (1236)
Q Consensus 563 ~~~l~~~~--~~~t~i~itH~~~~ 584 (1236)
.+.++++. .+.|+|++||...+
T Consensus 237 ~~~~~~~~~~~~~t~iivTh~d~~ 260 (304)
T 1rj9_A 237 LEQAKKFHEAVGLTGVIVTKLDGT 260 (304)
T ss_dssp HHHHHHHHHHHCCSEEEEECTTSS
T ss_pred HHHHHHHHHHcCCcEEEEECCccc
Confidence 33344332 27899999997544
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.65 E-value=1e-19 Score=213.21 Aligned_cols=178 Identities=18% Similarity=0.199 Sum_probs=132.1
Q ss_pred cccceeEEecC--CCEEEEEcCCCCChHHHHHHHhcccCCCC----cEEEE----CCeecccCChHHHhcceEEEcCCCC
Q 040099 1028 VFRDLCLTIPP--GKTIALVGESGSGKSTVISLLQRFYDPSS----GHITL----DGVEIQKLQVKWLRQQMGVVSQEPV 1097 (1236)
Q Consensus 1028 vL~~is~~I~~--Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~----G~I~i----dG~di~~i~~~~lR~~i~~V~Qdp~ 1097 (1236)
+.+.|+++|++ |+++||+|+||||||||+++|.|+|+|++ |+|.+ +|.++ .++..++ ++|++++|++.
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~~~~~~-~~I~~~~q~~~ 234 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AMQYSDY-PQMALGHQRYI 234 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SSCTTTH-HHHHHHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cCChhHH-HHHHHHHHHHH
Confidence 45789999999 99999999999999999999999999999 99987 46666 5566666 56999999999
Q ss_pred CChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc-cCCCEEEEec---CC------CCCCH
Q 040099 1098 LFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV-KEPKILLLDE---AT------SALDI 1167 (1236)
Q Consensus 1098 LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl-r~p~ILlLDE---aT------SaLD~ 1167 (1236)
+|.+|+++||. ..+ .+. .++.+ ..+|+|++|+..+++++. .+|++++||| |+ +++|.
T Consensus 235 ~~~~t~~~nl~-~~~-~~~-------~~~~~----~~~~~~~~~~~~i~~~~~~~~~~lllLdE~~~p~~~~g~~~sld~ 301 (365)
T 1lw7_A 235 DYAVRHSHKIA-FID-TDF-------ITTQA----FCIQYEGKAHPFLDSMIKEYPFDVTILLKNNTEWVDDGLRSLGSQ 301 (365)
T ss_dssp HHHHHHCSSEE-EES-SCH-------HHHHH----HHHHHHSCCCHHHHHHHHHSCCSEEEEEECCCC-----------C
T ss_pred HHHHhccCCEE-EEe-CCc-------hHHHH----HHHHHcCCCCHHHHHHHhhcCCCEEEECCCCCCcccCCCcCCccH
Confidence 99999999973 111 011 11111 124567788888888875 5899999999 54 68999
Q ss_pred HHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1168 ESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1168 ~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
.....+.+.|++..+ +.|+|+++|--..-+-+|++.++++ +.+.|+++||.++
T Consensus 302 ~~r~~l~~~l~~l~~~~~~~ililde~~~~~r~~~~i~~i~~--~l~~~~~~~~~~~ 356 (365)
T 1lw7_A 302 KQRQQFQQLLKKLLDKYKVPYIEIESPSYLDRYNQVKAVIEK--VLNEEEISELQNT 356 (365)
T ss_dssp CSHHHHHHHHHHHHHGGGCCCEEEECSSHHHHHHHHHHHHHH--HTSCCCCSSCCC-
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHHH--HhcccchhHhhcC
Confidence 999999999977654 7899999986433344777777764 5677788887543
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.65 E-value=2e-18 Score=214.30 Aligned_cols=190 Identities=17% Similarity=0.284 Sum_probs=121.4
Q ss_pred cEEEEeEEEECCCCCCCccccce----------eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCeecC
Q 040099 384 DIELKDVNFSYPARPDEQILNGF----------CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVLIDGVNLK 452 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i----------~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~ 452 (1236)
.++++|+++.|+.. .+++|+.+ +++++. +|||||||||||||+++|+|++.| ++|.|+++|.++.
T Consensus 10 ~i~~~~l~~~~~~~-~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 10 SVAENNLCSQYEEK-VRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp ----------CHHH-HHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred hhhhhhhhHHHHHH-HHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 47899999999631 23455554 367765 999999999999999999999988 8999999999863
Q ss_pred C---CCHHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHH
Q 040099 453 E---FQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 453 ~---~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGq 528 (1236)
. -....+|++|+|++|++.+++. ||+|||.++. .. +.... ..+|
T Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~l~~~~tv~e~i~~~~------------~~------~~~~~-----------~~~s--- 133 (608)
T 3szr_A 86 LKKLVNEDKWRGKVSYQDYEIEISDASEVEKEINKAQ------------NA------IAGEG-----------MGIS--- 133 (608)
T ss_dssp EEECSSSSCCEEEESCC---CCCCCHHHHHTTHHHHH------------HH------HHCSS-----------SCCC---
T ss_pred EecCCccccceeEEeeecccccCCCHHHHHHHHHHHH------------HH------hcCCc-----------cccc---
Confidence 2 1234678899999999988764 9999987521 00 00000 1112
Q ss_pred HHHHHHHHHhcCCCCEEEEeCc------CCCCCHHHHHHHHHHHHHHc-c--CceEEEEecCchhH--------hh----
Q 040099 529 KQRVAIARAMIKDPRILLLDEA------TSALDSESGRMVQEALDRVM-I--NRTTVIVSHRLSLI--------RN---- 587 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~------ts~lD~~~~~~i~~~l~~~~-~--~~t~i~itH~~~~~--------~~---- 587 (1236)
++++.++.+...+|+++++||| |++||+..+..+.+.++++. + +.++++++|+++.. +.
T Consensus 134 ~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~~ 213 (608)
T 3szr_A 134 HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDPE 213 (608)
T ss_dssp SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCSS
T ss_pred hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhhc
Confidence 2445555566678999999999 99999999999999999863 2 34778899987632 22
Q ss_pred -cCeEEEEECCEEEEEeCccccc
Q 040099 588 -ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 588 -ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
...|+|+.++.+++.|+.+++.
T Consensus 214 g~rtI~VlTK~Dlv~~g~~~~~~ 236 (608)
T 3szr_A 214 GDRTIGILTKPDLVDKGTEDKVV 236 (608)
T ss_dssp CCSEEEEEECGGGSSSSSTTCCC
T ss_pred CCceEEEecchhhcCcccHHHHH
Confidence 3468888888888777765544
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.64 E-value=6.2e-17 Score=183.33 Aligned_cols=161 Identities=22% Similarity=0.237 Sum_probs=109.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH--hcceEEEcCCCCCChh-hHHHHHHHH
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL--RQQMGVVSQEPVLFSD-TIRANIAEM 1110 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l--R~~i~~V~Qdp~LF~g-TIreNL~~~ 1110 (1236)
+|++++|||||||||||+++.|.|+++|++|+|.++|.|+.... +..+ |..+++|+|++.+++. |+++|+...
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~~~p~~~v~~~v~~~ 180 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEGTDSAALAYDAVQAM 180 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTTCCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHH
Confidence 68999999999999999999999999999999999999986543 2233 4679999999988764 899998521
Q ss_pred --hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHc--CCC
Q 040099 1111 --ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQDALDQVM--VDR 1184 (1236)
Q Consensus 1111 --a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~ 1184 (1236)
.+.+..+-..++..+ .....++..++||.+||||+..+|+ +|.|| |+++.| +.+.+++.. .+.
T Consensus 181 ~~~~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lLvLD-a~t~~~------~~~~~~~~~~~~~~ 249 (304)
T 1rj9_A 181 KARGYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWLVLD-AVTGQN------GLEQAKKFHEAVGL 249 (304)
T ss_dssp HHHTCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEEEEE-TTBCTH------HHHHHHHHHHHHCC
T ss_pred HhCCCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEEEEc-HHHHHH------HHHHHHHHHHHcCC
Confidence 111111101111000 0111246677999999999999999 56666 455543 333333322 278
Q ss_pred eEEEEecCchhhhhc----------CEEEEEeCCE
Q 040099 1185 TTLVVAHRLSTIKNA----------HLIAVVSQGM 1209 (1236)
Q Consensus 1185 TvI~IaHRl~ti~~a----------D~I~Vl~~G~ 1209 (1236)
|+|++||...+.+.. -.|..+..|+
T Consensus 250 t~iivTh~d~~a~gg~~l~i~~~~~~pi~~ig~Ge 284 (304)
T 1rj9_A 250 TGVIVTKLDGTAKGGVLIPIVRTLKVPIKFVGVGE 284 (304)
T ss_dssp SEEEEECTTSSCCCTTHHHHHHHHCCCEEEEECSS
T ss_pred cEEEEECCcccccccHHHHHHHHHCCCeEEEeCCC
Confidence 999999976543221 3566666664
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1.9e-18 Score=186.37 Aligned_cols=135 Identities=15% Similarity=0.132 Sum_probs=102.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh---hHHHHHHHH-
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD---TIRANIAEM- 1110 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g---TIreNL~~~- 1110 (1236)
..++|+++||+||||||||||+++|.|++.| ++++|+||+++++. |+++|+...
T Consensus 2 ~~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~----------------------~i~~v~~d~~~~~~~~~~~~~~~~~~~ 59 (211)
T 3asz_A 2 SAPKPFVIGIAGGTASGKTTLAQALARTLGE----------------------RVALLPMDHYYKDLGHLPLEERLRVNY 59 (211)
T ss_dssp ---CCEEEEEEESTTSSHHHHHHHHHHHHGG----------------------GEEEEEGGGCBCCCTTSCHHHHHHSCT
T ss_pred CCCCcEEEEEECCCCCCHHHHHHHHHHHhCC----------------------CeEEEecCccccCcccccHHHhcCCCC
Confidence 3579999999999999999999999999875 58999999998743 677775310
Q ss_pred --------hhhchHHHhhhhchhhhhcCCCCCCChhH----HHHHHHHHHHccCCCEEEEecCCCC-------CCHHHHH
Q 040099 1111 --------ANANGFISGLQEGYDTLVGERGVQLSGGQ----KQRVAIARAIVKEPKILLLDEATSA-------LDIESER 1171 (1236)
Q Consensus 1111 --------a~~~~~i~~lp~Gldt~vge~G~~LSGGQ----rQRlaLARALlr~p~ILlLDEaTSa-------LD~~te~ 1171 (1236)
..+.+.+..+ ++...+...+..+|+|| +||+++||+++.+|+++++||||++ ||+.++.
T Consensus 60 ~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~i~ld~~~~~ 137 (211)
T 3asz_A 60 DHPDAFDLALYLEHAQAL--LRGLPVEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLKVFVDADADE 137 (211)
T ss_dssp TSGGGBCHHHHHHHHHHH--HTTCCEEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEEEEEECCHHH
T ss_pred CChhhhhHHHHHHHHHHH--HcCCCcCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEEEEEeCCHHH
Confidence 0111122221 11122333466788886 5799999999999999999999999 9999999
Q ss_pred HHHHHHHHHc--CCCeEEEEecCc
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl 1193 (1236)
.+++.+++.. +|+|++.++|+.
T Consensus 138 ~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 138 RFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp HHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999987653 588999999984
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-16 Score=174.93 Aligned_cols=146 Identities=21% Similarity=0.238 Sum_probs=103.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCC-------CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDP-------SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
.|++||.++|+||||||||||+++|.+.+.+ ..|.|++++.+. .+ +++++.++|+..++..|+.||+
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~--~~----~~~i~~~~~~~~~~~~~~~~~~ 94 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT--FR----PERIREIAQNRGLDPDEVLKHI 94 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CC----HHHHHHHHHHTTSCHHHHHHTE
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC--CC----HHHHHHHHHHcCCCHHHHhhcE
Confidence 7999999999999999999999999997665 455888888653 11 2356777888888877888875
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHcc-------CCCEEEEecCCCCCCHH-------HH--
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIVK-------EPKILLLDEATSALDIE-------SE-- 1170 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALlr-------~p~ILlLDEaTSaLD~~-------te-- 1170 (1236)
. + . ...++ .|++++..+++++. +|++|+|||||+.+|++ .+
T Consensus 95 ~-------~----~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~l~~~~~~~~~~~~r~ 152 (231)
T 4a74_A 95 Y-------V----A-----------RAFNSNHQMLLVQQAEDKIKELLNTDRPVKLLIVDSLTSHFRSEYIGRGALAERQ 152 (231)
T ss_dssp E-------E----E-----------ECCSHHHHHHHHHHHHHHHHHHTTSSSCEEEEEEETSSHHHHHHSCSTTHHHHHH
T ss_pred E-------E----E-----------ecCChHHHHHHHHHHHHHHHHhcccCCceeEEEECChHHHhccccCCCcchhHHH
Confidence 2 0 0 01222 34455666676666 99999999999999984 22
Q ss_pred ---HHHHHHHHHHc--CCCeEEEEec----Cchhhhh-cCEEEEEeCC
Q 040099 1171 ---RVVQDALDQVM--VDRTTLVVAH----RLSTIKN-AHLIAVVSQG 1208 (1236)
Q Consensus 1171 ---~~I~~~L~~~~--~~~TvI~IaH----Rl~ti~~-aD~I~Vl~~G 1208 (1236)
..+.+.|.+.. .++|+|+|+| ....+.. ||++++|++|
T Consensus 153 ~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 153 QKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp HHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred HHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 24555555543 3799999999 4444765 8999999875
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.7e-18 Score=190.91 Aligned_cols=163 Identities=15% Similarity=0.123 Sum_probs=80.8
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC-CCCCCcEEEECCeecCCCCHHHHhcceEEE
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF-YDPQAGEVLIDGVNLKEFQLKWIREKIGLV 466 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~-~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v 466 (1236)
+|++++|. ++.++++++|+| +|+||||+|||||++.|.|. ..|++| |.++|.++.. . .. ++.++++
T Consensus 2 ~~l~~~~~---~~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t-~~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-T-VQ-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceEC---CEEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-c-ce-EeeEEEE
Confidence 47888995 346999999998 99999999999999999998 889999 8888877643 1 11 3568999
Q ss_pred ccCCCCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEE
Q 040099 467 SQEPVLL-SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRIL 545 (1236)
Q Consensus 467 ~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~il 545 (1236)
+|++.++ .-|+.|+..++......++.....+. +.+.... ...++|||||||+++|||++ ++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~--l~~~~~~-----------~~~~~sgg~rqrv~~ara~~----ll 131 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISY--IDEQFER-----------YLHDESGLNRRHIIDNRVHC----CF 131 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHH--HHHHHHH-----------HHHHHTSSCCTTCCCCCCCE----EE
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHH--HHHHHHH-----------HHHHhCHHhhhhhhhhhhhh----ee
Confidence 9987655 44888888776432111111111111 1111111 12369999999999999986 99
Q ss_pred EEeCcCCC-CCHHHHHHHHHHHHHHcc--CceEEEEecCchh
Q 040099 546 LLDEATSA-LDSESGRMVQEALDRVMI--NRTTVIVSHRLSL 584 (1236)
Q Consensus 546 ilDE~ts~-lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~ 584 (1236)
++||||++ ||+... +.++++.+ +.++|+..|++.+
T Consensus 132 ~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 132 YFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp EEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred eeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 99999985 999874 34444433 4677778898753
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=8.6e-17 Score=185.88 Aligned_cols=147 Identities=20% Similarity=0.213 Sum_probs=107.2
Q ss_pred EeEEEECCCCCCCccccceeE-------EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCC-CcEEEECCeecCCCCHHHH
Q 040099 388 KDVNFSYPARPDEQILNGFCL-------LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ-AGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~-------~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~-~G~i~~~g~~~~~~~~~~~ 459 (1236)
.+++++|... ..+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ +|.|...+.++ ++. .
T Consensus 92 ~~~~iR~~~~-~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~-e~~---~ 166 (356)
T 3jvv_A 92 AGAVFRTIPS-KVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPI-EFV---H 166 (356)
T ss_dssp EEEEEEEECC-SCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSC-CSC---C
T ss_pred cEEEEEECCC-CCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcH-Hhh---h
Confidence 5778887543 3567888776 77899999999999999999999999999997 56665433332 221 2
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+...++++|.+.... ..+.. + +|||||.
T Consensus 167 ~~~~~~v~q~~~~~~------------~~~~~------------------------------------~----~La~aL~ 194 (356)
T 3jvv_A 167 ESKKCLVNQREVHRD------------TLGFS------------------------------------E----ALRSALR 194 (356)
T ss_dssp CCSSSEEEEEEBTTT------------BSCHH------------------------------------H----HHHHHTT
T ss_pred hccccceeeeeeccc------------cCCHH------------------------------------H----HHHHHhh
Confidence 234456666432111 00100 0 9999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECC
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQG 597 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G 597 (1236)
.+|+++++|||| |.++...+.++ ...|+|+++++|+.+.+..+||+++|..|
T Consensus 195 ~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~~~~dRli~l~~~ 246 (356)
T 3jvv_A 195 EDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAAKTIDRVVDVFPA 246 (356)
T ss_dssp SCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHHHHHHHHHHTSCH
T ss_pred hCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHHHHHHHHhhhcCc
Confidence 999999999999 77776555554 33589999999999999889999988554
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.61 E-value=1.5e-17 Score=178.99 Aligned_cols=168 Identities=15% Similarity=0.188 Sum_probs=101.0
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC-----CCCCcEEEE-------CCeecC
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY-----DPQAGEVLI-------DGVNLK 452 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~-----~~~~G~i~~-------~g~~~~ 452 (1236)
|+++|++|+|+ .+++++ |++++|..++|+|++|||||||++.|+|.. .|+.|.+.. ++..+.
T Consensus 4 l~~~~~~~~~~----~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMS----APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEE----ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheee----cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 78999999995 258888 899999999999999999999999999998 888888754 222222
Q ss_pred CCC-----------HHHHhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccc-cccC
Q 040099 453 EFQ-----------LKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDT-NVGE 519 (1236)
Q Consensus 453 ~~~-----------~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t-~~g~ 519 (1236)
+.+ .+.+++.++++.|+....++ .+..++..+.. ..++++.+.+ ... +... .++.
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~-~~~~~~~~~~---------~~~--~~~~~~v~n 145 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLK-DLDQQMIEWA---------VDS--NIAVLVLLT 145 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCC-HHHHHHHHHH---------HHT--TCCEEEEEE
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCc-hhHHHHHHHH---------HHc--CCCeEEEEe
Confidence 111 12234444455543322221 22222222111 0111222222 111 3332 2466
Q ss_pred CCCCCChHHHHH-HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 520 HGIQLSGGQKQR-VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 520 ~g~~LSgGqkqR-iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
+...+|+||||| +..||+++.+|+++++|||||++|......+.+.|.++.
T Consensus 146 K~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~ 197 (210)
T 1pui_A 146 KADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWF 197 (210)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHH
T ss_pred cccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHH
Confidence 666899999999 899999999999999999999999999999999987764
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.60 E-value=3.9e-17 Score=192.19 Aligned_cols=166 Identities=15% Similarity=0.175 Sum_probs=100.9
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
+.|+++|++++|+. +.+++|+||+| +||||||||||||++.|+|...|..| .+|.++...+ ...+..
T Consensus 10 ~~l~~~~l~~~y~~---~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYR---KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTT---TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECC---EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 45899999999963 46999999998 99999999999999999999886665 2333322111 112356
Q ss_pred eEEEccCCCCC-chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC
Q 040099 463 IGLVSQEPVLL-SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD 541 (1236)
Q Consensus 463 i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~ 541 (1236)
+++++|++.++ ..||.||+.++... ..++.+.. +.+++.. .++.+.+||++||||++++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~-~~~~~~~~-----i~~~i~~--------------~~~~~l~qr~~IaRal~~d 136 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAV-DNSNCWQP-----VIDYIDS--------------KFEDYLNAESRVNRRQMPD 136 (418)
T ss_dssp EECC------CEEEEEEECC------------CHH-----HHHHHHH--------------HHHHHTTTSCC-CCCCCCC
T ss_pred EEEEEecCCcccceeeeechhhhhhc-cchhhHHH-----HHHHHHH--------------HHHHHHHHHHHHHHHhccC
Confidence 89999998776 45999999887542 11111111 1223321 3456677899999999999
Q ss_pred CC---EEEEeCcC-CCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 542 PR---ILLLDEAT-SALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 542 p~---ililDE~t-s~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
|+ +|++|||| ++||+..... ++.+..+.++|+|.|+.+.+
T Consensus 137 ~~~~vlL~ldePt~~~L~~~d~~~----lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 137 NRVQCCLYFIAPSGHGLKPLDIEF----MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp C-CCEEEEECCC-CCSCCHHHHHH----HHHHTTTSEEEEEEESTTSS
T ss_pred CCeeEEEEEecCcccCCCHHHHHH----HHHHhccCcEEEEEEcccCc
Confidence 99 99999999 6999887432 33444577888888876653
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=3.1e-15 Score=154.63 Aligned_cols=79 Identities=23% Similarity=0.312 Sum_probs=71.1
Q ss_pred CCCCChHHHHHHHHHHHhc----CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE--
Q 040099 521 GIQLSGGQKQRVAIARAMI----KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI-- 594 (1236)
Q Consensus 521 g~~LSgGqkqRiaiARal~----~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl-- 594 (1236)
...||||||||++|||+++ ++|+++||||||++||+.++..+.+.|+++.++.++|+|||+...+..||+++.+
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3579999999999999995 6689999999999999999999999999988888999999999988889999865
Q ss_pred ECCEE
Q 040099 595 QQGKI 599 (1236)
Q Consensus 595 ~~G~i 599 (1236)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 56653
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.59 E-value=6.2e-16 Score=197.25 Aligned_cols=167 Identities=16% Similarity=0.196 Sum_probs=107.6
Q ss_pred cEEEEeEEEECC----CCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 384 DIELKDVNFSYP----ARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~----~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
.+++++...-.= ..++..|++|+||++++|++++|+|||||||||+++++.+..-.
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~-------------------- 699 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM-------------------- 699 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH--------------------
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH--------------------
Confidence 577777543220 11246799999999999999999999999999999998753210
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
.+.-.+||++..-+ .+.+++ +. ..++.+ .+..+...+|+|++|+..|+|+ +
T Consensus 700 aq~g~~vpa~~~~i--~~~d~i-~~--------------~ig~~d-----------~l~~~~stfs~em~~~~~il~~-a 750 (918)
T 3thx_B 700 AQIGSYVPAEEATI--GIVDGI-FT--------------RMGAAD-----------NIYKGRSTFMEELTDTAEIIRK-A 750 (918)
T ss_dssp HHHTCCBSSSEEEE--ECCSEE-EE--------------EC---------------------CCHHHHHHHHHHHHHH-C
T ss_pred hhcCccccchhhhh--hHHHHH-HH--------------hCChHH-----------HHHHhHHHhhHHHHHHHHHHHh-c
Confidence 00011222221000 000000 00 001111 1112234789999999999999 8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHH-HHHHHHc--cCceEEEEecCchhHhhcCeEEE-EECCEE
Q 040099 540 KDPRILLLDEATSALDSESGRMVQ-EALDRVM--INRTTVIVSHRLSLIRNANIIAV-IQQGKI 599 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~-~~l~~~~--~~~t~i~itH~~~~~~~ad~i~v-l~~G~i 599 (1236)
.+|+++||||||+++|+.....+. ..++.+. .|.|+|++||+++....||+.-- +.++++
T Consensus 751 ~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~~~~v~n~~~ 814 (918)
T 3thx_B 751 TSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNYSHQVGNYHM 814 (918)
T ss_dssp CTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHTTTTEEEEEE
T ss_pred cCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhcccceEEEEE
Confidence 999999999999999999888776 5555553 47899999999988776776421 344444
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.58 E-value=3.1e-15 Score=154.60 Aligned_cols=79 Identities=27% Similarity=0.312 Sum_probs=71.5
Q ss_pred CCCCChhHHHHHHHHHHHc----cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE--
Q 040099 1132 GVQLSGGQKQRVAIARAIV----KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV-- 1205 (1236)
Q Consensus 1132 G~~LSGGQrQRlaLARALl----r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl-- 1205 (1236)
...||||||||++|||++. ++|+++||||||++||+.+...+.+.|++..++.++|+||||..++..||+|+++
T Consensus 62 ~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~~~~ad~i~~v~~ 141 (173)
T 3kta_B 62 IEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVMMANADKIIGVSM 141 (173)
T ss_dssp GGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHHTTCSEEEEEEE
T ss_pred cccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHHHHhCCEEEEEEe
Confidence 3679999999999999996 5679999999999999999999999999988888999999999999999999855
Q ss_pred eCCEE
Q 040099 1206 SQGMI 1210 (1236)
Q Consensus 1206 ~~G~I 1210 (1236)
++|..
T Consensus 142 ~~g~s 146 (173)
T 3kta_B 142 RDGVS 146 (173)
T ss_dssp ETTEE
T ss_pred cCCEE
Confidence 57753
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.58 E-value=1.6e-17 Score=187.08 Aligned_cols=129 Identities=12% Similarity=0.068 Sum_probs=95.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCC---C
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTH---A 488 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~---~ 488 (1236)
++.+++|+|+||||||||+++|.+++.+. | . . ++.+.+|+||+++++.++++|+.++.++ .
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 57799999999999999999999999764 2 0 0 4456677999999999999999876421 0
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCCcccc------ccCCCCCCChHHHHHHHHH--HHhcCCCCEEEEeCcCCCCCHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQGLDTN------VGEHGIQLSGGQKQRVAIA--RAMIKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~g~~t~------~g~~g~~LSgGqkqRiaiA--Ral~~~p~ililDE~ts~lD~~~ 558 (1236)
......++.+...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|+|+||+|+++|+.+
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 0000011222334567889999998764 4566789999999999998 666 999999999999999864
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.58 E-value=2.3e-16 Score=169.57 Aligned_cols=158 Identities=16% Similarity=0.251 Sum_probs=97.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhccc-----CCCCcEEEE-------CCeecc
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY-----DPSSGHITL-------DGVEIQ 1078 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-----~~~~G~I~i-------dG~di~ 1078 (1236)
|+++|++|+|+. ++|++ |.+++|++++|+|++|||||||++.|.|.. .|+.|.+.+ ++..+-
T Consensus 4 l~~~~~~~~~~~----~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 4 LNYQQTHFVMSA----PDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp -------CEEEE----SSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred hhhhhhhheeec----CCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 789999999962 47888 999999999999999999999999999998 788888765 333332
Q ss_pred cCC-----------hHHHhcceEEEcCCCCC-------Chh----h-HHHHHHHHhhhchHHHhhhhchhh-hhcCCCCC
Q 040099 1079 KLQ-----------VKWLRQQMGVVSQEPVL-------FSD----T-IRANIAEMANANGFISGLQEGYDT-LVGERGVQ 1134 (1236)
Q Consensus 1079 ~i~-----------~~~lR~~i~~V~Qdp~L-------F~g----T-IreNL~~~a~~~~~i~~lp~Gldt-~vge~G~~ 1134 (1236)
+.+ .+.+++.++.+.|++.. ++. + ..+.+. .++.. .+... .++.+...
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~~~~~~~~------~~~~~--~~~~~~~v~nK~D~ 149 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQSLQGLVVLMDIRHPLKDLDQQMI------EWAVD--SNIAVLVLLTKADK 149 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCTTEEEEEEEEETTSCCCHHHHHHH------HHHHH--TTCCEEEEEECGGG
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhhcccEEEEEEECCCCCchhHHHHH------HHHHH--cCCCeEEEEecccC
Confidence 211 12344444444443211 111 1 011111 11111 12221 13444557
Q ss_pred CChhHHHH-HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC
Q 040099 1135 LSGGQKQR-VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV 1182 (1236)
Q Consensus 1135 LSGGQrQR-laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~ 1182 (1236)
+|+||||| +..+|+++++|+++++|||||++|......+.+.|.+...
T Consensus 150 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 150 LASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp SCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred CCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 99999999 8999999999999999999999999999999999987653
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.56 E-value=3.2e-16 Score=171.27 Aligned_cols=165 Identities=18% Similarity=0.096 Sum_probs=114.0
Q ss_pred cccccceeE-EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc---ceEEEcCCCCCChh
Q 040099 1026 IEVFRDLCL-TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ---QMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1026 ~~vL~~is~-~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~---~i~~V~Qdp~LF~g 1101 (1236)
.+.|+++.. .+++|+.++|+||||||||||++.|.+...+.+|.+.+.+.+. +.+.+++ .+++.+|+....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~-- 83 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIEK-- 83 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBTT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhhC--
Confidence 357899998 8999999999999999999999999998888888888866543 2333332 344444432110
Q ss_pred hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC--EEEEecCCCCC--CHHHHHHHHHHH
Q 040099 1102 TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK--ILLLDEATSAL--DIESERVVQDAL 1177 (1236)
Q Consensus 1102 TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~--ILlLDEaTSaL--D~~te~~I~~~L 1177 (1236)
++ .+++.....++.... ....|.+|.++.+.+.+...+|+ +|++||||+.+ |+.....+.+.|
T Consensus 84 ----~~-------~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~~~~d~~~~~~~~~~l 150 (235)
T 2w0m_A 84 ----KL-------IIIDALMKEKEDQWS--LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVSALFLDKPAMARKISYYL 150 (235)
T ss_dssp ----TE-------EEEECCC----CTTB--CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGGSSSCGGGHHHHHHHH
T ss_pred ----CE-------EEEeccccccCceee--ecCCCHHHHHHHHHHHHHhhCCCceEEEEECchHhhcCCHHHHHHHHHHH
Confidence 10 000000000000000 12348999998888887778999 99999999888 998888888888
Q ss_pred HHHc--CCCeEEEEecCc--------hhhhh-cCEEEEEeCC
Q 040099 1178 DQVM--VDRTTLVVAHRL--------STIKN-AHLIAVVSQG 1208 (1236)
Q Consensus 1178 ~~~~--~~~TvI~IaHRl--------~ti~~-aD~I~Vl~~G 1208 (1236)
++.. .++|+|+++|.. ..+.. ||+|++|+..
T Consensus 151 ~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 151 KRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp HHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 7764 478999999999 44654 9999999864
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.56 E-value=1.3e-16 Score=179.61 Aligned_cols=114 Identities=13% Similarity=0.091 Sum_probs=90.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHH--------
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAE-------- 1109 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~-------- 1109 (1236)
++.+|||+|+||||||||+++|.+++++. | . . ++.+.+|+||+++|+.++++|+..
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~--------~-~~~~~iv~~D~f~~~~~~~~~l~~~~~~~~l~ 93 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------G--------G-EKSIGYASIDDFYLTHEDQLKLNEQFKNNKLL 93 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------G--------G-GSCEEEEEGGGGBCCHHHHHHHHHHTTTCGGG
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------C--------C-CceEEEeccccccCChHHHHHHhccccccchh
Confidence 56889999999999999999999999864 2 0 1 556677799999999999999842
Q ss_pred ----------HhhhchHHHhhhhchhhh------hcCCCCCCChhHHHHHHHH--HHHccCCCEEEEecCCCCCCHHH
Q 040099 1110 ----------MANANGFISGLQEGYDTL------VGERGVQLSGGQKQRVAIA--RAIVKEPKILLLDEATSALDIES 1169 (1236)
Q Consensus 1110 ----------~a~~~~~i~~lp~Gldt~------vge~G~~LSGGQrQRlaLA--RALlr~p~ILlLDEaTSaLD~~t 1169 (1236)
...+.+++..+++|++|. +...+.++||||+||+++| |++ +|+|||+||+|+++|+++
T Consensus 94 ~~~g~p~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~--~~~IlIlEG~~~~ld~~~ 169 (290)
T 1odf_A 94 QGRGLPGTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKL--PVDIFILEGWFLGFNPIL 169 (290)
T ss_dssp SSSCSTTSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEES--SCSEEEEEESSTTCCCCC
T ss_pred hhccCcchhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEc--CCCEEEEeCccccCCccc
Confidence 234556788999998875 3455678999999999998 666 999999999999999865
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.1e-15 Score=166.85 Aligned_cols=166 Identities=14% Similarity=0.047 Sum_probs=112.9
Q ss_pred CccccceeE-EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc---ceEEEccCCCCCch
Q 040099 400 EQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE---KIGLVSQEPVLLSS 475 (1236)
Q Consensus 400 ~~~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~---~i~~v~Q~~~l~~~ 475 (1236)
.+.|+++.. .+++|++++|+||||||||||++.+++...+.+|.+.+.+.+. +...+++ .+++.+|+...
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~--- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEE---SRDSIIRQAKQFNWDFEEYIE--- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSS---CHHHHHHHHHHTTCCCGGGBT---
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEccc---CHHHHHHHHHHhcchHHHHhh---
Confidence 467999988 8999999999999999999999999998888888887755432 2222222 23333332110
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC--EEEEeCcCCC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR--ILLLDEATSA 553 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~--ililDE~ts~ 553 (1236)
+++.+-.. .. .... + ..+- ...|.+|.++...+.+...+|+ ++++||||+.
T Consensus 83 ---~~~~~~~~-~~--------------~~~~--~----~~~~---~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~~~ 135 (235)
T 2w0m_A 83 ---KKLIIIDA-LM--------------KEKE--D----QWSL---VNLTPEELVNKVIEAKQKLGYGKARLVIDSVSAL 135 (235)
T ss_dssp ---TTEEEEEC-CC--------------------C----TTBC---SSCCHHHHHHHHHHHHHHHCSSCEEEEEETGGGG
T ss_pred ---CCEEEEec-cc--------------cccC--c----eeee---cCCCHHHHHHHHHHHHHhhCCCceEEEEECchHh
Confidence 01110000 00 0000 0 0011 1348999999888888778999 9999999988
Q ss_pred C--CHHHHHHHHHHHHHHc--cCceEEEEecCc--------hhHhh-cCeEEEEECCE
Q 040099 554 L--DSESGRMVQEALDRVM--INRTTVIVSHRL--------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 554 l--D~~~~~~i~~~l~~~~--~~~t~i~itH~~--------~~~~~-ad~i~vl~~G~ 598 (1236)
+ |+.....+.+.|+++. .+.|+|+++|.. ..+.. ||+|++|++.+
T Consensus 136 ~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~~ 193 (235)
T 2w0m_A 136 FLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRMI 193 (235)
T ss_dssp SSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEEE
T ss_pred hcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEEe
Confidence 8 9988888888888774 378999999998 44654 99999998653
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=1.5e-16 Score=187.25 Aligned_cols=160 Identities=18% Similarity=0.133 Sum_probs=99.6
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|.++|++++|+.. .+++|+||+| +|||+||||||||++.|+|...+..| .+|.++...+ ...++.
T Consensus 10 ~~l~~~~l~~~y~~~---~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-t~~~~~ 76 (418)
T 2qag_C 10 GYVGFANLPNQVYRK---SVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-TVQVEQ 76 (418)
T ss_dssp -----CCCCCCTTTT---TCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC------CCEEEE
T ss_pred CcEEEEecceeECCE---EEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-ceeeee
Confidence 468999999999743 5899999998 99999999999999999999876555 2444332211 112467
Q ss_pred eEEEcCCCCCC-hhhHHHHHHHHhhh------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC---EEEE
Q 040099 1089 MGVVSQEPVLF-SDTIRANIAEMANA------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK---ILLL 1158 (1236)
Q Consensus 1089 i~~V~Qdp~LF-~gTIreNL~~~a~~------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~---ILlL 1158 (1236)
+++++|++.++ ..||.||+.-.... ...+..+.+ .++.+.+||++||||++++|+ +|++
T Consensus 77 i~~v~q~~~~~~~Ltv~Dt~g~~~~~~~~~~~~~i~~~i~~-----------~~~~~l~qr~~IaRal~~d~~~~vlL~l 145 (418)
T 2qag_C 77 SKVLIKEGGVQLLLTIVDTPGFGDAVDNSNCWQPVIDYIDS-----------KFEDYLNAESRVNRRQMPDNRVQCCLYF 145 (418)
T ss_dssp EECC------CEEEEEEECC-----------CHHHHHHHHH-----------HHHHHTTTSCC-CCCCCCCC-CCEEEEE
T ss_pred EEEEEecCCcccceeeeechhhhhhccchhhHHHHHHHHHH-----------HHHHHHHHHHHHHHHhccCCCeeEEEEE
Confidence 89999988766 45777776311100 011111122 244567789999999999999 9999
Q ss_pred ecCC-CCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1159 DEAT-SALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1159 DEaT-SaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
|||| ++||+.... + ++.+..+.++|+|.|+.+++
T Consensus 146 dePt~~~L~~~d~~-~---lk~L~~~v~iIlVinK~Dll 180 (418)
T 2qag_C 146 IAPSGHGLKPLDIE-F---MKRLHEKVNIIPLIAKADTL 180 (418)
T ss_dssp CCC-CCSCCHHHHH-H---HHHHTTTSEEEEEEESTTSS
T ss_pred ecCcccCCCHHHHH-H---HHHHhccCcEEEEEEcccCc
Confidence 9999 699987643 3 33334578999999988865
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.55 E-value=1.3e-16 Score=181.28 Aligned_cols=157 Identities=18% Similarity=0.125 Sum_probs=79.7
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc-cCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF-YDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~-~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
+|++..|.. ..+++|++|+| +|||+||+|||||++.|++. ..|.+| |.++|.++.. .. . ++.++++
T Consensus 2 ~~l~~~~~~---~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~-t~-~-~~~~~~~ 68 (301)
T 2qnr_A 2 SNLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIER-TV-Q-IEASTVE 68 (301)
T ss_dssp -------------------CEEE------EEEEETTSSHHHHHHHHHC----------------------------CEEE
T ss_pred CCCcceECC---EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCC-cc-e-EeeEEEE
Confidence 467888864 35899999998 99999999999999999998 888999 9999987753 11 1 4668999
Q ss_pred cCCCCCC-hhhHHHHHHHH------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCC-
Q 040099 1093 SQEPVLF-SDTIRANIAEM------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA- 1164 (1236)
Q Consensus 1093 ~Qdp~LF-~gTIreNL~~~------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSa- 1164 (1236)
+|++.++ .-||.||.... ......+..+.+.++..+ .++|||||||+++|||+. +|++||||++
T Consensus 69 ~q~~~~~~~ltv~Dt~g~~~~~~~~e~~~~l~~~l~~~~~~~~----~~~sgg~rqrv~~ara~~----ll~ldePt~~~ 140 (301)
T 2qnr_A 69 IEERGVKLRLTVVDTPGYGDAINCRDCFKTIISYIDEQFERYL----HDESGLNRRHIIDNRVHC----CFYFISPFGHG 140 (301)
T ss_dssp EC---CCEEEEEEEEC-----------CTTHHHHHHHHHHHHH----HHHTSSCCTTCCCCCCCE----EEEEECSSSSS
T ss_pred ecCCCcccCcchhhhhhhhhhcCcHHHHHHHHHHHHHHHHHHH----HHhCHHhhhhhhhhhhhh----eeeeecCcccC
Confidence 9986543 33555553210 011122222222233333 358999999999999985 9999999985
Q ss_pred CCHHHHHHHHHHHHHHcC--CCeEEEEecCchh
Q 040099 1165 LDIESERVVQDALDQVMV--DRTTLVVAHRLST 1195 (1236)
Q Consensus 1165 LD~~te~~I~~~L~~~~~--~~TvI~IaHRl~t 1195 (1236)
||+... +.+++..+ +.++|+..|++.+
T Consensus 141 Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~~ 169 (301)
T 2qnr_A 141 LKPLDV----AFMKAIHNKVNIVPVIAKADTLT 169 (301)
T ss_dssp CCHHHH----HHHHHHTTTSCEEEEECCGGGSC
T ss_pred CCHHHH----HHHHHHHhcCCEEEEEEeCCCCC
Confidence 999874 33444333 4577777998753
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=2.1e-15 Score=190.93 Aligned_cols=167 Identities=16% Similarity=0.193 Sum_probs=112.4
Q ss_pred cEEEEeEEEECCCC----CCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEEECCeecCCCCHHH
Q 040099 384 DIELKDVNFSYPAR----PDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVLIDGVNLKEFQLKW 458 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~----~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~~~g~~~~~~~~~~ 458 (1236)
.+++++.. +|-- +++.+++|++|+ ++|++++|+|||||||||++|+++|+..+ ..|. .+..
T Consensus 577 ~i~i~~~r--HP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vpa----- 642 (800)
T 1wb9_A 577 GIRITEGR--HPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVPA----- 642 (800)
T ss_dssp CEEEEEEC--CTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBSS-----
T ss_pred CEEEEecc--ccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccch-----
Confidence 47777653 2310 235699999999 99999999999999999999999997432 2231 1111
Q ss_pred HhcceEEEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 459 IREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 459 ~r~~i~~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
-+..+++++| +|.. ++.||+..+ . ..+|+|+++ ++.+..
T Consensus 643 ~~~~i~~~~~---i~~~~~~~d~l~~~----------------------------~--------stf~~e~~~-~~~il~ 682 (800)
T 1wb9_A 643 QKVEIGPIDR---IFTRVGAADDLASG----------------------------R--------STFMVEMTE-TANILH 682 (800)
T ss_dssp SEEEECCCCE---EEEEEC-----------------------------------------------CHHHHHH-HHHHHH
T ss_pred hcccceeHHH---HHhhCCHHHHHHhh----------------------------h--------hhhhHHHHH-HHHHHH
Confidence 1235677666 4432 555554321 0 245666664 444445
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHH-HHHHHHHc--cCceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 538 MIKDPRILLLDEATSALDSESGRMV-QEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i-~~~l~~~~--~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
.+.+|+++||||||+++|+.....+ .+.++.+. .+.|+|++||+.+....||++..+++|++.....
T Consensus 683 ~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~~~ 752 (800)
T 1wb9_A 683 NATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDALEH 752 (800)
T ss_dssp HCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEEEE
T ss_pred hccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEEEc
Confidence 6899999999999999998765554 55666654 3789999999998877899888889998865443
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.52 E-value=5e-15 Score=188.89 Aligned_cols=152 Identities=15% Similarity=0.122 Sum_probs=103.1
Q ss_pred ccEEEeEEEEECC----CCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH
Q 040099 1009 GEVQFLRVSFKYP----TRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~----~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~ 1084 (1236)
+.|.+++...-.- ...+..|++|+||++++|+.++|+|||||||||+++++.++.-.
T Consensus 639 ~~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~------------------- 699 (918)
T 3thx_B 639 RKIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIM------------------- 699 (918)
T ss_dssp CEEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHH-------------------
T ss_pred CcEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHH-------------------
Confidence 3577766432210 11135699999999999999999999999999999998654211
Q ss_pred HhcceEEEcCCC-------CCChh-hHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1085 LRQQMGVVSQEP-------VLFSD-TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1085 lR~~i~~V~Qdp-------~LF~g-TIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
.+.-.+||++. .+|.. .+.+| +..+-..+|+|++|+..++|+ +.+|++|
T Consensus 700 -aq~g~~vpa~~~~i~~~d~i~~~ig~~d~---------------------l~~~~stfs~em~~~~~il~~-a~~p~Ll 756 (918)
T 3thx_B 700 -AQIGSYVPAEEATIGIVDGIFTRMGAADN---------------------IYKGRSTFMEELTDTAEIIRK-ATSQSLV 756 (918)
T ss_dssp -HHHTCCBSSSEEEEECCSEEEEEC-------------------------------CCHHHHHHHHHHHHHH-CCTTCEE
T ss_pred -hhcCccccchhhhhhHHHHHHHhCChHHH---------------------HHHhHHHhhHHHHHHHHHHHh-ccCCCEE
Confidence 01111233322 11110 11121 122335689999999999999 8999999
Q ss_pred EEecCCCCCCHHHHHHHH-HHHHHHc--CCCeEEEEecCchhhhhcCEE
Q 040099 1157 LLDEATSALDIESERVVQ-DALDQVM--VDRTTLVVAHRLSTIKNAHLI 1202 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~-~~L~~~~--~~~TvI~IaHRl~ti~~aD~I 1202 (1236)
||||||+++|+.....+. ..++.+. .++|+|++||.++....||+.
T Consensus 757 LLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~~l~~~~ 805 (918)
T 3thx_B 757 ILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVCELEKNY 805 (918)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHT
T ss_pred EEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHHHHHhhc
Confidence 999999999998887776 5555442 489999999999887666643
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.51 E-value=8.2e-16 Score=162.81 Aligned_cols=145 Identities=14% Similarity=0.103 Sum_probs=99.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
.+++|+.++|+|||||||||++++|.+. |..|.|.+||.++..... -++.+++++|++. ...|+.+|+...+...
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~~~~ 79 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVAGRY 79 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHHHHH
Confidence 5789999999999999999999999998 678999999988754321 1345788999765 5679999986332210
Q ss_pred ------hHHHhhh--hchhhhh--cCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCC
Q 040099 1115 ------GFISGLQ--EGYDTLV--GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDR 1184 (1236)
Q Consensus 1115 ------~~i~~lp--~Gldt~v--ge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~ 1184 (1236)
..++... .+++..- +.....+|+|++|++++||++.++|+++ +|++..+.+.+.++......
T Consensus 80 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~~~~~l~~~~ 151 (191)
T 1zp6_A 80 AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHSQFADLGAFE 151 (191)
T ss_dssp HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHHHTTCCGGGG
T ss_pred hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHHHHhccCccc
Confidence 0011100 0111111 3344579999999999999999999987 58877777776665432222
Q ss_pred eEEEEecC
Q 040099 1185 TTLVVAHR 1192 (1236)
Q Consensus 1185 TvI~IaHR 1192 (1236)
++++.+|.
T Consensus 152 ~~~i~t~~ 159 (191)
T 1zp6_A 152 HHVLPVSG 159 (191)
T ss_dssp GGEEECTT
T ss_pred ccEEECCC
Confidence 34444543
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.50 E-value=4.3e-17 Score=175.40 Aligned_cols=140 Identities=17% Similarity=0.193 Sum_probs=99.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHH-------
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA------- 1108 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~------- 1108 (1236)
.++|+++||+||||||||||+++|.|+++|+ | ..+++|+||.+.++.+.++|+.
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999875 3 2355555655555555554431
Q ss_pred ----HHhhhchHHHhhhhc--hhhhhcCCCCCCChhHHHHHHHH-HHHccCCCEEEEecCC-----------CCCCHHHH
Q 040099 1109 ----EMANANGFISGLQEG--YDTLVGERGVQLSGGQKQRVAIA-RAIVKEPKILLLDEAT-----------SALDIESE 1170 (1236)
Q Consensus 1109 ----~~a~~~~~i~~lp~G--ldt~vge~G~~LSGGQrQRlaLA-RALlr~p~ILlLDEaT-----------SaLD~~te 1170 (1236)
+...+.+++..++.| +++++.+.+..+|+||+||+++| |+++.+++++++|||. .-+|...+
T Consensus 80 ~~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~~~l~~~~d~~i~vd~~~~ 159 (208)
T 3c8u_A 80 PETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGWRDLTAIWDVSIRLEVPMA 159 (208)
T ss_dssp GGGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTGGGGGGTCSEEEEECCCHH
T ss_pred CchhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchhHHHHHhcCEEEEEeCCHH
Confidence 112233456666665 67788899999999999999999 9999999999999985 33566666
Q ss_pred HHHHHHHHHHc-CCCeEEEEecCch
Q 040099 1171 RVVQDALDQVM-VDRTTLVVAHRLS 1194 (1236)
Q Consensus 1171 ~~I~~~L~~~~-~~~TvI~IaHRl~ 1194 (1236)
..+++.+++.. .|+|.-.+.||..
T Consensus 160 ~~~~R~~~R~~~~g~t~~~~~~~~~ 184 (208)
T 3c8u_A 160 DLEARLVQRWLDHGLNHDAAVARAQ 184 (208)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 65555555432 2444444444443
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-15 Score=163.69 Aligned_cols=150 Identities=14% Similarity=0.208 Sum_probs=106.7
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM 1110 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 1110 (1236)
.-+.++|+.++|+||||||||||+++|.|+++| ..|+|.+++.+.+. ..++.++|++|++.+|...+.+
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~----- 80 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISR----- 80 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHT-----
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhc-----
Confidence 346799999999999999999999999999986 68999998876543 2467899999999877642211
Q ss_pred hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 040099 1111 ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1111 a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.+|++.+. + .| ++.|-.++. ++.++.+++++||| ||+.+...+.+.+. +++|+++++
T Consensus 81 ---~~f~E~~~------~--~~-~~yg~~~~~---v~~~l~~G~illLD-----LD~~~~~~i~~~l~---~~~tI~i~t 137 (219)
T 1s96_A 81 ---DAFLEHAE------V--FG-NYYGTSREA---IEQVLATGVDVFLD-----IDWQGAQQIRQKMP---HARSIFILP 137 (219)
T ss_dssp ---TCEEEEEE------E--TT-EEEEEEHHH---HHHHHTTTCEEEEE-----CCHHHHHHHHHHCT---TCEEEEEEC
T ss_pred ---CHHHHHHH------H--Hh-ccCCCCHHH---HHHHHhcCCeEEEE-----ECHHHHHHHHHHcc---CCEEEEEEC
Confidence 01111110 0 00 011111222 56677889999999 99999999998875 578999999
Q ss_pred cCchhhhhcCEEEEEeCCEEEEecChhHHhhc
Q 040099 1191 HRLSTIKNAHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1191 HRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|+++.++. |+ +..| .|+++++.++
T Consensus 138 h~~~~l~~--Rl--~~rG----~~~~e~i~~r 161 (219)
T 1s96_A 138 PSKIELDR--RL--RGRG----QDSEEVIAKR 161 (219)
T ss_dssp SSHHHHHH--HH--HTTS----CSCHHHHHHH
T ss_pred CCHHHHHH--HH--HHcC----CCCHHHHHHH
Confidence 99998876 43 6777 6888888754
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.1e-15 Score=165.02 Aligned_cols=143 Identities=11% Similarity=0.096 Sum_probs=101.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hH----HH
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SI----RD 479 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti----~~ 479 (1236)
.-+.++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+.+. ..++.++|++|++.+|.. ++ .|
T Consensus 10 ~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~----~e~~gi~y~fq~~~~f~~~~~~~~f~E 85 (219)
T 1s96_A 10 HHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP----GEVHGEHYFFVNHDEFKEMISRDAFLE 85 (219)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT----TCCBTTTBEECCHHHHHHHHHTTCEEE
T ss_pred cccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc----ccccCceEEECCHHHHHHHHhcCHHHH
Confidence 446799999999999999999999999999986 68999988866543 235679999999887765 44 35
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~ 559 (1236)
|+.+.... | |-.+++ ++.++..++++||| ||+.+.
T Consensus 86 ~~~~~~~~-------------------------y------------g~~~~~---v~~~l~~G~illLD-----LD~~~~ 120 (219)
T 1s96_A 86 HAEVFGNY-------------------------Y------------GTSREA---IEQVLATGVDVFLD-----IDWQGA 120 (219)
T ss_dssp EEEETTEE-------------------------E------------EEEHHH---HHHHHTTTCEEEEE-----CCHHHH
T ss_pred HHHHHhcc-------------------------C------------CCCHHH---HHHHHhcCCeEEEE-----ECHHHH
Confidence 54432110 0 000111 23344457999999 999999
Q ss_pred HHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCccccc
Q 040099 560 RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 560 ~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
..+.+.+. ++.|+++++|+++.+.. |+ +++| .++.+++.
T Consensus 121 ~~i~~~l~---~~~tI~i~th~~~~l~~--Rl--~~rG----~~~~e~i~ 159 (219)
T 1s96_A 121 QQIRQKMP---HARSIFILPPSKIELDR--RL--RGRG----QDSEEVIA 159 (219)
T ss_dssp HHHHHHCT---TCEEEEEECSSHHHHHH--HH--HTTS----CSCHHHHH
T ss_pred HHHHHHcc---CCEEEEEECCCHHHHHH--HH--HHcC----CCCHHHHH
Confidence 99998775 57899999999998865 33 5666 45655554
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.49 E-value=4e-14 Score=159.41 Aligned_cols=151 Identities=19% Similarity=0.218 Sum_probs=100.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh-cCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA-YGKTH 487 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~-~g~~~ 487 (1236)
.+++|++++|+||||||||||++.+++... .|++. .|.+... +..+.|+..+... ..+.+++. ++. +
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~-~ 93 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGA-H 93 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHT-T
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHh-h
Confidence 478999999999999999999999998654 56663 3443311 3467888776532 23333322 222 1
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC--CCCHHHH---HHH
Q 040099 488 ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS--ALDSESG---RMV 562 (1236)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts--~lD~~~~---~~i 562 (1236)
....+..+..+... +....+.....||+||+|++ |+++.+|+++|+||||+ ++|.... ..+
T Consensus 94 ~~~~~~~~~~~~l~-----------l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~ 159 (279)
T 1nlf_A 94 LSAEERQAVADGLL-----------IQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQV 159 (279)
T ss_dssp SCHHHHHHHHHHEE-----------ECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHH
T ss_pred cChhhhhhccCceE-----------EeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHH
Confidence 23333333333322 23334556778999998875 68889999999999999 9997543 677
Q ss_pred HHHHHHHc--cCceEEEEecCchhH
Q 040099 563 QEALDRVM--INRTTVIVSHRLSLI 585 (1236)
Q Consensus 563 ~~~l~~~~--~~~t~i~itH~~~~~ 585 (1236)
.+.|+++. .|.|+|+++|.....
T Consensus 160 ~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 160 IGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHcCCEEEEEecCCCcc
Confidence 77787774 388999999987654
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.49 E-value=2e-15 Score=176.39 Aligned_cols=179 Identities=13% Similarity=0.130 Sum_probs=114.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE 461 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~ 461 (1236)
.+++++ +++|++ .+ |+++||++++|++ +|||||||||||||+++|+|+. ++|.++........++
T Consensus 16 ~l~~~~-~~~y~~---~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDS---LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECC---ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355666 788852 35 9999999999999 9999999999999999999984 4455544333333456
Q ss_pred ceEEEccCCCCCc-hhHHHHHhcCCCCCCHHH----HHHHHHHhccHHHHHhC-------CCCcccc-------ccCCCC
Q 040099 462 KIGLVSQEPVLLS-SSIRDNIAYGKTHATKEE----IQAAAEAANASHFIKNL-------PQGLDTN-------VGEHGI 522 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~----~~~~~~~~~~~~~i~~l-------~~g~~t~-------~g~~g~ 522 (1236)
.++|++|++.++. .|+.||+.+|... +.+. +.+.++ ....+++... +..-|+. +-..+.
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~-~~~~~~~~i~~~i~-~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~ 160 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQI-NKEDSYKPIVEFID-AQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGH 160 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-C-CHHHHSHHHHHHHH-HHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC-
T ss_pred eEEEEeecCccccccchhhhhhhhhcc-ccchhhhHHHHHHH-HHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCC
Confidence 8999999998874 5999999998642 3221 111111 1122333322 1112222 223445
Q ss_pred CCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH-Hc-cCceEEEEec
Q 040099 523 QLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDR-VM-INRTTVIVSH 580 (1236)
Q Consensus 523 ~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~-~~-~~~t~i~itH 580 (1236)
.|+-.+ +.|+++|..+++|+++|+|+..|.+.....+.+.+++ +. .|.+++.++.
T Consensus 161 ~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~ 217 (427)
T 2qag_B 161 SLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPT 217 (427)
T ss_dssp --CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC-
T ss_pred CCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCC
Confidence 677766 8999999999999999999999998877778888876 54 3667777764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=5e-14 Score=152.42 Aligned_cols=152 Identities=13% Similarity=0.109 Sum_probs=98.2
Q ss_pred CccccceeE-EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHH
Q 040099 400 EQILNGFCL-LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIR 478 (1236)
Q Consensus 400 ~~~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~ 478 (1236)
.+.|+++.. .+++|++++|+||||||||||++.+++ .+..+.++++. +..+-...+.
T Consensus 6 ~~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~--------------------~~~~~~~~~~ 63 (220)
T 2cvh_A 6 TKSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDT--------------------EGGFSPERLV 63 (220)
T ss_dssp CHHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEES--------------------SCCCCHHHHH
T ss_pred cHHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEEC--------------------CCCCCHHHHH
Confidence 356777766 799999999999999999999999999 33333344433 2211111222
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChH--HHHHHHHHHHhcCC-CCEEEEeCcCCCCC
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGG--QKQRVAIARAMIKD-PRILLLDEATSALD 555 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgG--qkqRiaiARal~~~-p~ililDE~ts~lD 555 (1236)
+.... .....++ +...+ .+ ..+|++ |+|+++.+|+++++ |+++|+||||+.+|
T Consensus 64 ~~~~~--~~~~~~~------------~~~~~------~~----~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~ 119 (220)
T 2cvh_A 64 QMAET--RGLNPEE------------ALSRF------IL----FTPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYR 119 (220)
T ss_dssp HHHHT--TTCCHHH------------HHHHE------EE----ECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTT
T ss_pred HHHHh--cCCChHH------------HhhcE------EE----EecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhh
Confidence 21110 0111111 11111 01 123444 47799999999986 99999999999999
Q ss_pred HHHH--------HHHHHHHHHHcc--CceEEEEecCch-------------hHh-hcCeEEEEECC
Q 040099 556 SESG--------RMVQEALDRVMI--NRTTVIVSHRLS-------------LIR-NANIIAVIQQG 597 (1236)
Q Consensus 556 ~~~~--------~~i~~~l~~~~~--~~t~i~itH~~~-------------~~~-~ad~i~vl~~G 597 (1236)
+..+ ..+.+.|+++.+ +.|+|+++|... .+. .||+|++|++.
T Consensus 120 ~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 120 AEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp GGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 7432 335555666643 789999999765 344 49999999764
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.48 E-value=2.4e-14 Score=154.95 Aligned_cols=151 Identities=15% Similarity=0.101 Sum_probs=98.6
Q ss_pred ccccceeE-EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCL-TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~-~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
+.|+++.. .+++|+.++|+||+|||||||++.|.+ .+..+.++++..+ ..+.+.+++.. +...+....
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~i~~~~--~~~~~~~~~~~----~~~~~~~~~--- 75 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAYVDTEG--GFSPERLVQMA----ETRGLNPEE--- 75 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEEEESSC--CCCHHHHHHHH----HTTTCCHHH---
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEEEECCC--CCCHHHHHHHH----HhcCCChHH---
Confidence 46777776 799999999999999999999999998 4344455555432 12222222211 000000000
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChh--HHHHHHHHHHHccC-CCEEEEecCCCCCCHHHH--------HHHH
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGG--QKQRVAIARAIVKE-PKILLLDEATSALDIESE--------RVVQ 1174 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGG--QrQRlaLARALlr~-p~ILlLDEaTSaLD~~te--------~~I~ 1174 (1236)
+...+ .+. ..|++ |+|+++.+|+++++ |+++|+||||+.+|+..+ ..+.
T Consensus 76 ----------~~~~~------~~~----~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~~~l~~~~~~~~~~~~~~~~~ 135 (220)
T 2cvh_A 76 ----------ALSRF------ILF----TPSDFKEQRRVIGSLKKTVDSNFALVVVDSITAHYRAEENRSGLIAELSRQL 135 (220)
T ss_dssp ----------HHHHE------EEE----CCTTTSHHHHHHHHHHHHCCTTEEEEEEECCCCCTTGGGGSSTTHHHHHHHH
T ss_pred ----------HhhcE------EEE----ecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcHHHhhhcCchHHHHHHHHHHH
Confidence 11100 111 23444 47899999999986 999999999999998543 3344
Q ss_pred HHHHHHcC--CCeEEEEecCch-------------hhh-hcCEEEEEeCC
Q 040099 1175 DALDQVMV--DRTTLVVAHRLS-------------TIK-NAHLIAVVSQG 1208 (1236)
Q Consensus 1175 ~~L~~~~~--~~TvI~IaHRl~-------------ti~-~aD~I~Vl~~G 1208 (1236)
+.|++..+ ++|+|+++|... .+. .||+|++|+..
T Consensus 136 ~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 136 QVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp HHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 44665543 789999999876 344 59999999754
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.4e-15 Score=160.95 Aligned_cols=139 Identities=17% Similarity=0.060 Sum_probs=91.6
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA 488 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~ 488 (1236)
.+++|++++|+||||||||||+++|+|. |+.|.|.++|.++..... .++.++|++|++. .+.++.+|+.+..
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~--~~~~~~~~~~~~~-~~~~v~~~l~~~~--- 76 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK--HGRIDPWLPQSHQ-QNRMIMQIAADVA--- 76 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC--SSCCCTTSSSHHH-HHHHHHHHHHHHH---
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh--cccccCCccchhh-hhHHHHHHHHHHH---
Confidence 4789999999999999999999999998 789999999977532211 1344688888755 3568899986521
Q ss_pred CHHHHHHHHHHhccHHHHHhCC--CCccccc--cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLP--QGLDTNV--GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQE 564 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~--~g~~t~~--g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~ 564 (1236)
.. ..+ .+....++.+. .+++... +.....+|+|++||+++||++.++|+++ +|+...+.+.+
T Consensus 77 ---~~--~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~~~ 142 (191)
T 1zp6_A 77 ---GR--YAK-EGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADLHS 142 (191)
T ss_dssp ---HH--HHH-TSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHHHH
T ss_pred ---HH--Hhc-cCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHHHH
Confidence 00 010 00000000000 0111111 3334579999999999999999999876 58877666666
Q ss_pred HHHHH
Q 040099 565 ALDRV 569 (1236)
Q Consensus 565 ~l~~~ 569 (1236)
.+..+
T Consensus 143 ~~~~l 147 (191)
T 1zp6_A 143 QFADL 147 (191)
T ss_dssp HTTCC
T ss_pred HHhcc
Confidence 65443
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.47 E-value=2.1e-16 Score=181.16 Aligned_cols=148 Identities=16% Similarity=0.177 Sum_probs=109.1
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC--------CCCCcEEEECCeecCCCC---------------HHHHhcceEEE---
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY--------DPQAGEVLIDGVNLKEFQ---------------LKWIREKIGLV--- 466 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~--------~~~~G~i~~~g~~~~~~~---------------~~~~r~~i~~v--- 466 (1236)
=++++|+|+||||||||+|.|+|.+ .|+.|+|.+||.++...+ ...+++.++++
T Consensus 4 i~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~ 83 (318)
T 1nij_A 4 IAVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDN 83 (318)
T ss_dssp EEEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHH
T ss_pred ccEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhH
Confidence 3589999999999999999999998 789999999999987653 24567789888
Q ss_pred ccCCCC-CchhHHHHHhcCCCCCCHHHH---HHHHHHh---------ccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 467 SQEPVL-LSSSIRDNIAYGKTHATKEEI---QAAAEAA---------NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 467 ~Q~~~l-~~~ti~~ni~~g~~~~~~~~~---~~~~~~~---------~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
+|++.+ |+.++.||..++.|..-...+ .+..+.. ++.++...+ .+||+|||||+.
T Consensus 84 ~q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~------------~~ls~g~~Q~~~ 151 (318)
T 1nij_A 84 LDKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQM------------NQFTIAQSQVGY 151 (318)
T ss_dssp HHHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHH------------HHCHHHHHHHHT
T ss_pred HhcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHH------------hhchHHHHHHHh
Confidence 688764 677999999887542100111 0111111 111222111 158999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCch
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
.+++++.+|+++ ||| +.+.+.++++..+.|+++++|+..
T Consensus 152 ad~ill~k~dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 152 ADRILLTKTDVA--GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp CSEEEEECTTTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred CCEEEEECcccC--CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 999999999987 998 677778887777889999999743
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.46 E-value=1.2e-14 Score=184.04 Aligned_cols=166 Identities=14% Similarity=0.149 Sum_probs=110.2
Q ss_pred ccEEEeEEEEECCCC----CCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEEECCeecccCChH
Q 040099 1009 GEVQFLRVSFKYPTR----PHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~----~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~idG~di~~i~~~ 1083 (1236)
+.|.+++. ++|-- .+..+++|+||+ ++|+.++|+|||||||||+++++.++.-+ ..|. .+. .
T Consensus 576 ~~i~i~~~--rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~vp---a- 642 (800)
T 1wb9_A 576 PGIRITEG--RHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YVP---A- 642 (800)
T ss_dssp SCEEEEEE--CCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CBS---S-
T ss_pred CCEEEEec--cccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------ccc---h-
Confidence 35666654 34410 134689999999 99999999999999999999999997532 2231 111 1
Q ss_pred HHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1084 WLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1084 ~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
-+.++++++| +|. -++.+|+.. | -..+|+|+++ ++.+...+.+|++|||||||
T Consensus 643 -~~~~i~~~~~---i~~~~~~~d~l~~-------------~--------~stf~~e~~~-~~~il~~a~~psLlLLDEp~ 696 (800)
T 1wb9_A 643 -QKVEIGPIDR---IFTRVGAADDLAS-------------G--------RSTFMVEMTE-TANILHNATEYSLVLMDEIG 696 (800)
T ss_dssp -SEEEECCCCE---EEEEEC--------------------------------CHHHHHH-HHHHHHHCCTTEEEEEESCC
T ss_pred -hcccceeHHH---HHhhCCHHHHHHh-------------h--------hhhhhHHHHH-HHHHHHhccCCCEEEEECCC
Confidence 1345777766 443 366666531 1 1246777665 44445568999999999999
Q ss_pred CCCCHHHHHHH-HHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEe
Q 040099 1163 SALDIESERVV-QDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEK 1213 (1236)
Q Consensus 1163 SaLD~~te~~I-~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~ 1213 (1236)
+++|+.....+ ++.++.+. .++|+|++||..+....||++..+.+|++...
T Consensus 697 ~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~~l~d~~~~v~n~~~~~~ 750 (800)
T 1wb9_A 697 RGTSTYDGLSLAWACAENLANKIKALTLFATHYFELTQLPEKMEGVANVHLDAL 750 (800)
T ss_dssp CCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGGGHHHHSTTEEEEEEEEE
T ss_pred CCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHHHHhhhhhceEEEEEEEE
Confidence 99888655544 55665553 37899999999988877888777777776543
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.45 E-value=1e-13 Score=155.99 Aligned_cols=146 Identities=14% Similarity=0.153 Sum_probs=98.1
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh-hh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA-NA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a-~~ 1113 (1236)
.+++|+.++|+||+|||||||++.+.+... .|.+. .|.+... +..+.|++.+... ..+.+++.... ..
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~~------~~~v~~~~~e~~~--~~~~~r~~~~g~~~ 94 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGELP------TGPVIYLPAEDPP--TAIHHRLHALGAHL 94 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCCC------CCCEEEEESSSCH--HHHHHHHHHHHTTS
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccCC------CccEEEEECCCCH--HHHHHHHHHHHhhc
Confidence 478999999999999999999999998764 57664 3544321 3467788776543 33433432211 01
Q ss_pred c-----hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC--CCCHHHH---HHHHHHHHHHc--
Q 040099 1114 N-----GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS--ALDIESE---RVVQDALDQVM-- 1181 (1236)
Q Consensus 1114 ~-----~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS--aLD~~te---~~I~~~L~~~~-- 1181 (1236)
. +..+.+ ++....+.....||+||+|++ |+++++|+++|+||||+ ++|..+. ..+.+.|+++.
T Consensus 95 ~~~~~~~~~~~l--~l~~~~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~~~~~~~~~L~~l~~~ 169 (279)
T 1nlf_A 95 SAEERQAVADGL--LIQPLIGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAAD 169 (279)
T ss_dssp CHHHHHHHHHHE--EECCCTTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhhhhhccCce--EEeecCCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchHHHHHHHHHHHHHHHH
Confidence 0 011111 222333456678999998865 78899999999999999 9998554 66777777664
Q ss_pred CCCeEEEEecCchhh
Q 040099 1182 VDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1182 ~~~TvI~IaHRl~ti 1196 (1236)
.++|+|+|+|.....
T Consensus 170 ~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 170 TGCSIVFLHHASKGA 184 (279)
T ss_dssp HCCEEEEEEEC----
T ss_pred cCCEEEEEecCCCcc
Confidence 389999999987654
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.44 E-value=2.4e-16 Score=169.55 Aligned_cols=138 Identities=17% Similarity=0.182 Sum_probs=97.9
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcC-CCCC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHA 488 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g-~~~~ 488 (1236)
.++|++++|+||||||||||+++|+|+++|+ | ..+++|+|+.+.++.+..+|+... ....
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g------------------~~~g~v~~d~~~~~~~~~~~~~~~~~~~~ 79 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G------------------LPAEVVPMDGFHLDNRLLEPRGLLPRKGA 79 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T------------------CCEEEEESGGGBCCHHHHGGGTCGGGTTS
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C------------------CceEEEecCCCcCCHHHHHHhcccccCCC
Confidence 5789999999999999999999999999886 5 257888888888888777776421 1111
Q ss_pred CHHHHHHHHHHhccHHHHHhCCCC--ccccccCCCCCCChHHHHHHHHH-HHhcCCCCEEEEeCcCCCCCHHHHHHHHHH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQG--LDTNVGEHGIQLSGGQKQRVAIA-RAMIKDPRILLLDEATSALDSESGRMVQEA 565 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~g--~~t~~g~~g~~LSgGqkqRiaiA-Ral~~~p~ililDE~ts~lD~~~~~~i~~~ 565 (1236)
. .+.+...+.+++..++.| +++++.+++..+|+||+||+++| |+++.++.++++|||.- ..
T Consensus 80 ~-----~~~~~~~~~~~l~~l~~~~~i~~p~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~~-----------~~ 143 (208)
T 3c8u_A 80 P-----ETFDFEGFQRLCHALKHQERVIYPLFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPGW-----------RD 143 (208)
T ss_dssp G-----GGBCHHHHHHHHHHHHHCSCEEEEEEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTTG-----------GG
T ss_pred C-----chhhHHHHHHHHHHHhcCCceecccCCccccCCCCCceEEcCCCcEEEECCceeccCCchh-----------HH
Confidence 0 011111223344444444 77888999999999999999998 99999999888999841 01
Q ss_pred HHHHccCceEEEEecCchh
Q 040099 566 LDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 566 l~~~~~~~t~i~itH~~~~ 584 (1236)
+.+. -.+++.+.+..+.
T Consensus 144 l~~~--~d~~i~vd~~~~~ 160 (208)
T 3c8u_A 144 LTAI--WDVSIRLEVPMAD 160 (208)
T ss_dssp GGGT--CSEEEEECCCHHH
T ss_pred HHHh--cCEEEEEeCCHHH
Confidence 1111 1367777777765
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.44 E-value=1.1e-15 Score=176.06 Aligned_cols=164 Identities=15% Similarity=0.224 Sum_probs=117.9
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHh
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR 1086 (1236)
|+.++++++|.. ..+|+++||++++|++++|+|++|||||||++.|.|++.|++|+|.+.|.|+..... ...|
T Consensus 30 ie~~~~~~~~~~---~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 30 AESRRADHRAAV---RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HTCSSHHHHHHH---HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HeeCCcccccCh---HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 445566677742 358999999999999999999999999999999999999999999999999865432 3457
Q ss_pred cceEEEcCCCCCCh----------hhH---HHHHH--HH----------hh----------hchH------------HHh
Q 040099 1087 QQMGVVSQEPVLFS----------DTI---RANIA--EM----------AN----------ANGF------------ISG 1119 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~----------gTI---reNL~--~~----------a~----------~~~~------------i~~ 1119 (1236)
+++++++|+|.+|. ||- +|.+. +. ++ ..++ .+.
T Consensus 107 ~~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~ 186 (337)
T 2qm8_A 107 TRMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQG 186 (337)
T ss_dssp GGSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------
T ss_pred hhheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHH
Confidence 88999999998885 333 33321 00 00 0000 000
Q ss_pred hhhch----h----hhhcC-CCCCCChhHHHHHHHHHHHcc------CCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1120 LQEGY----D----TLVGE-RGVQLSGGQKQRVAIARAIVK------EPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1120 lp~Gl----d----t~vge-~G~~LSGGQrQRlaLARALlr------~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
+..+. + +.++. ....+|+|++|+++.|++++. +|+++. ||++|.+.-..+.+.|.+..
T Consensus 187 i~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 187 IKKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp CCTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 11110 0 00110 113478999999999999998 689887 99999999999999987754
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2.3e-15 Score=172.43 Aligned_cols=144 Identities=16% Similarity=0.161 Sum_probs=103.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc--------CCCCcEEEECCeecccCC---------------hHHHhcceEEE---c
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY--------DPSSGHITLDGVEIQKLQ---------------VKWLRQQMGVV---S 1093 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~--------~~~~G~I~idG~di~~i~---------------~~~lR~~i~~V---~ 1093 (1236)
+.++|+|+||||||||++.|+|++ .|+.|+|.|||.++...+ ...+++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 579999999999999999999998 789999999999997763 35677889887 7
Q ss_pred CCCC-CChhhHHHHHH-----HHhh-h--chHHH-hhh-hchhhhhcCC-----CCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1094 QEPV-LFSDTIRANIA-----EMAN-A--NGFIS-GLQ-EGYDTLVGER-----GVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1094 Qdp~-LF~gTIreNL~-----~~a~-~--~~~i~-~lp-~Gldt~vge~-----G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|++. .|+.++.||.. ..+. . ..... ..+ ++.-+.++-. -.++|+||+||.+.+|+++.+|+++
T Consensus 85 q~~~~~~~~~v~E~~~l~~p~~~~~~~~~~~~~~~~~~l~~~l~~vd~~~~~~~~~~ls~g~~Q~~~ad~ill~k~dl~- 163 (318)
T 1nij_A 85 DKGNIQFDRLVIECTGMADPGPIIQTFFSHEVLCQRYLLDGVIALVDAVHADEQMNQFTIAQSQVGYADRILLTKTDVA- 163 (318)
T ss_dssp HHTSCCCSEEEEEEETTCCHHHHHHHHHHSHHHHHHEEEEEEEEEEETTTHHHHHHHCHHHHHHHHTCSEEEEECTTTC-
T ss_pred hcCCCCCCEEEEeCCCCCCHHHHHHHHhcCccccCeEEECCEEEEEEHHHHHHHHhhchHHHHHHHhCCEEEEECcccC-
Confidence 8775 36777777752 1000 0 00000 000 0111111110 0158999999999999999999987
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCch
Q 040099 1158 LDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLS 1194 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ 1194 (1236)
||| +.+.+.|++..++.|+++++|+..
T Consensus 164 -de~---------~~l~~~l~~l~~~~~ii~~sh~~~ 190 (318)
T 1nij_A 164 -GEA---------EKLHERLARINARAPVYTVTHGDI 190 (318)
T ss_dssp -SCT---------HHHHHHHHHHCSSSCEEECCSSCC
T ss_pred -CHH---------HHHHHHHHHhCCCCeEEEecccCC
Confidence 988 677888888777899999999643
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.3e-15 Score=161.04 Aligned_cols=162 Identities=13% Similarity=0.108 Sum_probs=110.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHHHHhhhchHH
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFI 1117 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~~~a~~~~~i 1117 (1236)
|+.++|+|||||||||+++.|.+ +.+|.+.+||.++... ..+++++|++..+ ..|+++|+...+.. +.
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~ 70 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLTVN--FL 70 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHHHH--HH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHHHH--HH
Confidence 68899999999999999999987 5689999998776432 2467788876433 45899998643321 11
Q ss_pred HhhhhchhhhhcC--------CCCCC--ChhHHHHHHHHH------HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1118 SGLQEGYDTLVGE--------RGVQL--SGGQKQRVAIAR------AIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1118 ~~lp~Gldt~vge--------~G~~L--SGGQrQRlaLAR------ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
. .|.+..+.. .-..+ |+|++|++.++. +++++|+...+|+ ++|+...+. .+.++...
T Consensus 71 ~---~~~~~ild~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~~~-~~~~~~~~ 143 (189)
T 2bdt_A 71 L---AQNDVVLDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCLEL-VEEFESKG 143 (189)
T ss_dssp H---TTCEEEEESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGGHH-HHHHHHTT
T ss_pred h---cCCcEEEeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHHHH-HHHHhhcC
Confidence 0 111111110 00124 888888888888 8889998888884 799988777 77777654
Q ss_pred -CCCeEEEEecC-chhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1182 -VDRTTLVVAHR-LSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1182 -~~~TvI~IaHR-l~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
.+.|+|..+|. ++++.. ||+|+ ++|+++..|+++-|-
T Consensus 144 ~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 144 IDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp CCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred CCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 35789999999 999876 99998 999999999988764
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.38 E-value=2.9e-13 Score=159.87 Aligned_cols=154 Identities=21% Similarity=0.261 Sum_probs=104.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHH--HhcceEEEccCCCCCc-h
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKW--IREKIGLVSQEPVLLS-S 475 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~--~r~~i~~v~Q~~~l~~-~ 475 (1236)
-+++||++++|++++|||+||||||||+++|+|++.|++|+|.++|.|..... ... .|++|+|++|++.++. .
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~ 362 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSAS 362 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHH
Confidence 36789999999999999999999999999999999999999999887764321 122 3678999999987664 5
Q ss_pred hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCC--CCCCChHHHHHHHHHHHhcC-CC-CEEEEeCcC
Q 040099 476 SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEH--GIQLSGGQKQRVAIARAMIK-DP-RILLLDEAT 551 (1236)
Q Consensus 476 ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~--g~~LSgGqkqRiaiARal~~-~p-~ililDE~t 551 (1236)
|+++||.++... +.+-.+ +|| .|.. -.+|-.--+||+.++|++.. .| .+|+..+||
T Consensus 363 tV~e~l~~a~~~-------------~~DvVL------IDT-aGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDat 422 (503)
T 2yhs_A 363 VIFDAIQAAKAR-------------NIDVLI------ADT-AGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDAS 422 (503)
T ss_dssp HHHHHHHHHHHT-------------TCSEEE------ECC-CCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGG
T ss_pred HHHHHHHHHHhc-------------CCCEEE------EeC-CCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCc
Confidence 999999875311 000000 011 0110 00122233588999998754 45 366666688
Q ss_pred CCCCHHHHHHHHHHHHHHccCceEEEEec
Q 040099 552 SALDSESGRMVQEALDRVMINRTTVIVSH 580 (1236)
Q Consensus 552 s~lD~~~~~~i~~~l~~~~~~~t~i~itH 580 (1236)
++.|.... .+.+.+ ..+.|.+++||
T Consensus 423 tGq~al~~---ak~f~~-~~~itgvIlTK 447 (503)
T 2yhs_A 423 TGQNAVSQ---AKLFHE-AVGLTGITLTK 447 (503)
T ss_dssp GTHHHHHH---HHHHHH-HTCCSEEEEEC
T ss_pred ccHHHHHH---HHHHHh-hcCCCEEEEEc
Confidence 88665432 122222 13789999999
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.4e-14 Score=167.45 Aligned_cols=167 Identities=14% Similarity=0.122 Sum_probs=104.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
.++.++ +++|++. + |+++||+|++|+. +|||||||||||||+++|+|+. ++|.++...++...++
T Consensus 16 ~l~~~~-~~~y~~~---~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~~~~~~ 82 (427)
T 2qag_B 16 TVPLAG-HVGFDSL---P-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQPGVQLQ 82 (427)
T ss_dssp -CCCCC-CC-CC-----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCSSCEEE
T ss_pred eEEEee-EEEECCe---e-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCccceEe
Confidence 355556 7788642 4 9999999999999 9999999999999999999994 5666665544445577
Q ss_pred ceEEEcCCCCCC-hhhHHHHHH---H------Hh--------hhchHHHhh-------hhchhhh-------hcCCCCCC
Q 040099 1088 QMGVVSQEPVLF-SDTIRANIA---E------MA--------NANGFISGL-------QEGYDTL-------VGERGVQL 1135 (1236)
Q Consensus 1088 ~i~~V~Qdp~LF-~gTIreNL~---~------~a--------~~~~~i~~l-------p~Gldt~-------vge~G~~L 1135 (1236)
.+++++|++.++ .-|+.||+. . .. ....++... +..-|+. |-..+..|
T Consensus 83 ~i~~v~Q~~~l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~~~~l 162 (427)
T 2qag_B 83 SNTYDLQESNVRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPTGHSL 162 (427)
T ss_dssp EEEEEEEC--CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCCC---
T ss_pred eEEEEeecCccccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCCCCCC
Confidence 899999998776 347777652 0 00 011111111 1111222 11233456
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHH-Hc-CCCeEEEEecC
Q 040099 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ-VM-VDRTTLVVAHR 1192 (1236)
Q Consensus 1136 SGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~-~~-~~~TvI~IaHR 1192 (1236)
+..+ +.++++|-.+++|+++||+|..|.+..-..+.+.+++ +. .|.+++.|+..
T Consensus 163 ~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~ 218 (427)
T 2qag_B 163 KSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTD 218 (427)
T ss_dssp CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC--
T ss_pred CHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCC
Confidence 6665 7899999999999999999999998777777777776 33 46678888753
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.37 E-value=7.7e-13 Score=156.33 Aligned_cols=152 Identities=21% Similarity=0.286 Sum_probs=104.6
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHH--HhcceEEEcCCCCCC-hhh
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKW--LRQQMGVVSQEPVLF-SDT 1102 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~--lR~~i~~V~Qdp~LF-~gT 1102 (1236)
+++||++++|++++|||+||||||||++.|.|++.+++|+|.++|.|+.... +.. .|++|++|+|++.++ ..|
T Consensus 284 ~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~~~p~~t 363 (503)
T 2yhs_A 284 EPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTGADSASV 363 (503)
T ss_dssp CCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTTCCHHHH
T ss_pred CCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccCcCHHHH
Confidence 6789999999999999999999999999999999999999999988875431 122 477899999998765 569
Q ss_pred HHHHHHHHhhhchHHHhhhhchhhhhc-CCCC-----CCChhHHHHHHHHHHHccC-C-CEEEEecCCCCCCHHHHHHHH
Q 040099 1103 IRANIAEMANANGFISGLQEGYDTLVG-ERGV-----QLSGGQKQRVAIARAIVKE-P-KILLLDEATSALDIESERVVQ 1174 (1236)
Q Consensus 1103 IreNL~~~a~~~~~i~~lp~Gldt~vg-e~G~-----~LSGGQrQRlaLARALlr~-p-~ILlLDEaTSaLD~~te~~I~ 1174 (1236)
+++|+.... . .|+|..+= --|. ++-.--+|++.++|++... | .+|+..+||++.|.... .
T Consensus 364 V~e~l~~a~-~--------~~~DvVLIDTaGrl~~~~~lm~EL~kiv~iar~l~~~~P~evLLvLDattGq~al~~---a 431 (503)
T 2yhs_A 364 IFDAIQAAK-A--------RNIDVLIADTAGRLQNKSHLMEELKKIVRVMKKLDVEAPHEVMLTIDASTGQNAVSQ---A 431 (503)
T ss_dssp HHHHHHHHH-H--------TTCSEEEECCCCSCCCHHHHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGTHHHHHH---H
T ss_pred HHHHHHHHH-h--------cCCCEEEEeCCCccchhhhHHHHHHHHHHHHHHhccCCCCeeEEEecCcccHHHHHH---H
Confidence 999985221 1 22222221 1111 1112235788899987643 5 35555558888665422 2
Q ss_pred HHHHHHcCCCeEEEEecCchh
Q 040099 1175 DALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1175 ~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
+.+++. .+.|.+++|| ++.
T Consensus 432 k~f~~~-~~itgvIlTK-LD~ 450 (503)
T 2yhs_A 432 KLFHEA-VGLTGITLTK-LDG 450 (503)
T ss_dssp HHHHHH-TCCSEEEEEC-GGG
T ss_pred HHHHhh-cCCCEEEEEc-CCC
Confidence 223322 3779999999 554
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.36 E-value=4.9e-13 Score=146.93 Aligned_cols=146 Identities=20% Similarity=0.288 Sum_probs=90.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHc--CCCC-----CCcEEEECCeecCC-CCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQR--FYDP-----QAGEVLIDGVNLKE-FQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~-----~~G~i~~~g~~~~~-~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
-+++|++++|+||||||||||++.+++ ..+| ..|.+++++.+... .....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 5555 67888998865211 1122344456665543 4566
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCHH-
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDSE- 557 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~~- 557 (1236)
+.+..+. +.++..+.+ .-+++++ .+|+++++|||++.+|+.
T Consensus 93 ~~~~~~~-~~~~~~~~~-----------------------------------~~~~~~~~~~~~~lliiD~~~~~~~~~~ 136 (243)
T 1n0w_A 93 VAYARAF-NTDHQTQLL-----------------------------------YQASAMMVESRYALLIVDSATALYRTDY 136 (243)
T ss_dssp EEEEECC-SHHHHHHHH-----------------------------------HHHHHHHHHSCEEEEEEETSSGGGC---
T ss_pred eEEEecC-CHHHHHHHH-----------------------------------HHHHHHHhcCCceEEEEeCchHHHHHHh
Confidence 5543321 222222211 1111121 689999999999999986
Q ss_pred ------HH-----HHHHHHHHHHc--cCceEEEEecCchhH-------------------h-hcCeEEEEECC
Q 040099 558 ------SG-----RMVQEALDRVM--INRTTVIVSHRLSLI-------------------R-NANIIAVIQQG 597 (1236)
Q Consensus 558 ------~~-----~~i~~~l~~~~--~~~t~i~itH~~~~~-------------------~-~ad~i~vl~~G 597 (1236)
++ ..+...|.++. .+.|+|+++|..... . .||.+++|++|
T Consensus 137 ~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 137 SGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp ----CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred cCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 32 23444454443 378999999965432 2 48999999865
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.36 E-value=1.7e-15 Score=174.64 Aligned_cols=177 Identities=11% Similarity=0.159 Sum_probs=117.5
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC----HHHHhc
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ----LKWIRE 461 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~----~~~~r~ 461 (1236)
+++|++++|. ...+|+++||++++|++++|+||||||||||++.|+|++.|++|+|.+.|.|+.... ....|.
T Consensus 31 e~~~~~~~~~---~~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~~ 107 (337)
T 2qm8_A 31 ESRRADHRAA---VRDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDKT 107 (337)
T ss_dssp TCSSHHHHHH---HHHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCGG
T ss_pred eeCCcccccC---hHHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHhh
Confidence 3445566663 235899999999999999999999999999999999999999999999998875432 123467
Q ss_pred ceEEEccCCCCCc----------h---hHHHHHhc----CCC-------C--CCHHHHHHHHHHh-------------cc
Q 040099 462 KIGLVSQEPVLLS----------S---SIRDNIAY----GKT-------H--ATKEEIQAAAEAA-------------NA 502 (1236)
Q Consensus 462 ~i~~v~Q~~~l~~----------~---ti~~ni~~----g~~-------~--~~~~~~~~~~~~~-------------~~ 502 (1236)
++++++|++.+|. | +++|.+.. +.+ . .++..+.+.++.. .+
T Consensus 108 ~i~~v~q~~~~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~~i 187 (337)
T 2qm8_A 108 RMARLAIDRNAFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQGI 187 (337)
T ss_dssp GSTTGGGCTTEEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC------C
T ss_pred hheeeccCcccccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHHHH
Confidence 8999999998874 2 23433310 100 0 0111111111000 00
Q ss_pred HHHHHhCCCCcc-ccccC-CCCCCChHHHHHHHHHHHhcC------CCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 503 SHFIKNLPQGLD-TNVGE-HGIQLSGGQKQRVAIARAMIK------DPRILLLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 503 ~~~i~~l~~g~~-t~~g~-~g~~LSgGqkqRiaiARal~~------~p~ililDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
...+...|+-+- +.+.. ....+|+|++|++..|++++. +|+++. |||+|......+.+.|.++
T Consensus 188 ~~~i~~~~~ivvlNK~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~ 258 (337)
T 2qm8_A 188 KKGIFELADMIAVNKADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDH 258 (337)
T ss_dssp CTTHHHHCSEEEEECCSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHH
T ss_pred HHHHhccccEEEEEchhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHH
Confidence 000111121000 11111 123579999999999999998 688886 9999999999999988765
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.3e-16 Score=168.72 Aligned_cols=166 Identities=14% Similarity=0.073 Sum_probs=107.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCCCHH
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHATKE 491 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~ 491 (1236)
|++++|+|||||||||+++.|++ |.+|++.++|.++... ..+++++|....+ ..++++|+.+..
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~------ 66 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM------VVGGYRPPWESDELLALTWKNITDLT------ 66 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT------CCTTCCCGGGCHHHHHHHHHHHHHHH------
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh------hccccccCccchhHHHHHHHHHHHHH------
Confidence 68999999999999999999997 6789999998665321 2467788765433 347888875410
Q ss_pred HHHHHHHHhccHHHHHhCCCCcccccc----CCCCCC--ChHHHHHHHHHH------HhcCCCCEEEEeCcCCCCCHHHH
Q 040099 492 EIQAAAEAANASHFIKNLPQGLDTNVG----EHGIQL--SGGQKQRVAIAR------AMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 492 ~~~~~~~~~~~~~~i~~l~~g~~t~~g----~~g~~L--SgGqkqRiaiAR------al~~~p~ililDE~ts~lD~~~~ 559 (1236)
..... .+.. .+ ++...+ +.-..+ |+|++|++.++. +++++|+...+|+ ++|+...
T Consensus 67 --~~~~~-~~~~-~i------ld~~~~~~~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 67 --VNFLL-AQND-VV------LDYIAFPDEAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp --HHHHH-TTCE-EE------EESCCCHHHHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred --HHHHh-cCCc-EE------EeeccCHHHHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 00000 0000 00 010000 000124 888888888888 8888888888884 7999877
Q ss_pred HHHHHHHHHHcc-CceEEEEecC-chhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 560 RMVQEALDRVMI-NRTTVIVSHR-LSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 560 ~~i~~~l~~~~~-~~t~i~itH~-~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
.. .+.+..+.. +.|+|..+|. ++.++. ||+|+ ++|+++.+|+.+-|-
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~~~~~~ 183 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMAGDPLE 183 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC-------
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeecCCchh
Confidence 77 777776643 5789999999 998876 99998 999999999887664
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.33 E-value=6.9e-13 Score=152.19 Aligned_cols=123 Identities=20% Similarity=0.194 Sum_probs=84.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-CCCcEEEEC-CeecCCCCHHHHhcceEEEccCCCCCch-hH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-PQAGEVLID-GVNLKEFQLKWIREKIGLVSQEPVLLSS-SI 477 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-~~~G~i~~~-g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti 477 (1236)
.-++++++. .+|++++|+||||||||||+|+|+|... |..|+|.++ |.+.. ...+..+++++|++++++. ++
T Consensus 204 ~gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv 278 (358)
T 2rcn_A 204 DGLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGV 278 (358)
T ss_dssp BTHHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHH
T ss_pred cCHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccH
Confidence 357788875 4899999999999999999999999999 999999987 75542 2345679999999988865 99
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+++ +....+.+++.+ ...+++..+ |+....+....+|| ||+||++||++++
T Consensus 279 ~e~---~l~~l~~~e~~~-----~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gli 329 (358)
T 2rcn_A 279 REF---GLWHLEPEQITQ-----GFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGAI 329 (358)
T ss_dssp HTC---CCCCCCHHHHHH-----TSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTSS
T ss_pred HHh---hhcCCCHHHHHH-----HHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcCC
Confidence 985 333344444432 223344333 55555666677899 9999999999863
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.31 E-value=1.2e-12 Score=149.45 Aligned_cols=175 Identities=15% Similarity=0.098 Sum_probs=113.2
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHhcc--eEEEcCCCCCCh-hhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLRQQ--MGVVSQEPVLFS-DTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR~~--i~~V~Qdp~LF~-gTIreNL 1107 (1236)
..++|+.++|||||||||||+++.|.|++.|++|+|.++|.|+..... ..++++ +.+++|++.+++ .|+++|+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999999976553 234444 449999998875 4899998
Q ss_pred HHHhh-hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeE
Q 040099 1108 AEMAN-ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTT 1186 (1236)
Q Consensus 1108 ~~~a~-~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~Tv 1186 (1236)
..... -.+.+ -+||. |-.. .-..=-++.-.++|++..++++++||.+|. .|.... + +.+.+ ..+.|.
T Consensus 205 ~~~~~~~~d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~~~--~-~~~~~-~~~it~ 272 (328)
T 3e70_C 205 QHAKARGIDVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIVEQ--A-RQFNE-AVKIDG 272 (328)
T ss_dssp HHHHHHTCSEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHHHH--H-HHHHH-HSCCCE
T ss_pred HHHHhccchhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHHHH--H-HHHHH-hcCCCE
Confidence 52211 11111 02221 1100 011122344569999999999999996665 333221 1 22222 137899
Q ss_pred EEEecCchh---------h-hhcCEEEEEeCCEEE---EecChhHHhh
Q 040099 1187 LVVAHRLST---------I-KNAHLIAVVSQGMIV---EKGSHESLIS 1221 (1236)
Q Consensus 1187 I~IaHRl~t---------i-~~aD~I~Vl~~G~Iv---e~Gt~~eLl~ 1221 (1236)
|++||--.+ + ...-.|..+..|+-+ +.-+|+.+.+
T Consensus 273 iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v~dl~~~~~~~~~~ 320 (328)
T 3e70_C 273 IILTKLDADARGGAALSISYVIDAPILFVGVGQGYDDLRPFEKEWFLE 320 (328)
T ss_dssp EEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSSTTCEEECCHHHHHH
T ss_pred EEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCccccccCCHHHHHH
Confidence 999994332 1 123468888888754 3344555443
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.30 E-value=5.1e-15 Score=174.35 Aligned_cols=129 Identities=16% Similarity=0.143 Sum_probs=91.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC----CHHHHhcceEEEc---------c
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF----QLKWIREKIGLVS---------Q 468 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~----~~~~~r~~i~~v~---------Q 468 (1236)
+|+++ + .++|++++|+|||||||||++++|+|+++|++|+|.++|.++... +...+++++++.+ |
T Consensus 158 ~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~~~g~~f~~~lr~~Lrq 235 (418)
T 1p9r_A 158 NFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNPRVDMTFARGLRAILRQ 235 (418)
T ss_dssp HHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBGGGTBCHHHHHHHHGGG
T ss_pred HHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEccccCcCHHHHHHHHhcc
Confidence 56666 4 379999999999999999999999999999999999998877421 1223445566655 9
Q ss_pred CCCCC--c-----hhHHHHHhcCCC---------CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 469 EPVLL--S-----SSIRDNIAYGKT---------HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 469 ~~~l~--~-----~ti~~ni~~g~~---------~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
+|.++ . .|+.+|+.++.. ..+..+..+.+...++.++. ...+|||||+||
T Consensus 236 ~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~-------------~~~~LSgg~~QR- 301 (418)
T 1p9r_A 236 DPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL-------------ISSSLLGVLAQR- 301 (418)
T ss_dssp CCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH-------------HHHHEEEEEEEE-
T ss_pred CCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH-------------HHHHHHHHHHHH-
Confidence 98653 2 489999876321 11122333334444443321 224799999999
Q ss_pred HHHHHhcCCCCEEEE
Q 040099 533 AIARAMIKDPRILLL 547 (1236)
Q Consensus 533 aiARal~~~p~ilil 547 (1236)
|||+++.+|++..-
T Consensus 302 -LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 302 -LVRTLCPDCKEPYE 315 (418)
T ss_dssp -EEEEECTTTCEEEE
T ss_pred -hhhhhcCCCCccCC
Confidence 99999999998763
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.30 E-value=6.7e-14 Score=154.54 Aligned_cols=147 Identities=19% Similarity=0.187 Sum_probs=98.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcC---
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYG--- 484 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g--- 484 (1236)
++++++|+|||||||||++++|+ |+..|+.|+|.++|.+.. ..+...+++++|++.+++ .++.+|+...
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999988775432 124455677788877665 4889988641
Q ss_pred ----------CCCCCHHHHHHHHHHhccH--HHHHhCCC--CccccccCCCCCCChHHHHHHHHHHHh-cCCCCEEEEe-
Q 040099 485 ----------KTHATKEEIQAAAEAANAS--HFIKNLPQ--GLDTNVGEHGIQLSGGQKQRVAIARAM-IKDPRILLLD- 548 (1236)
Q Consensus 485 ----------~~~~~~~~~~~~~~~~~~~--~~i~~l~~--g~~t~~g~~g~~LSgGqkqRiaiARal-~~~p~ililD- 548 (1236)
.+. +.++.....+..... -++ ..|. .++.....+...||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~-~~~~~~~l~~~~~~~~vi~L-~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~ 172 (246)
T 2bbw_A 102 RRGQHWLLDGFPR-TLGQAEALDKICEVDLVISL-NIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDD 172 (246)
T ss_dssp CTTSCEEEESCCC-SHHHHHHHHTTCCCCEEEEE-ECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCT
T ss_pred cCCCeEEEECCCC-CHHHHHHHHhhcCCCEEEEE-ECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccc
Confidence 111 222221111100000 000 0000 011112334457999 66 888 9999999999
Q ss_pred ---CcCCCCCHHHHHHHHHHHHHHcc
Q 040099 549 ---EATSALDSESGRMVQEALDRVMI 571 (1236)
Q Consensus 549 ---E~ts~lD~~~~~~i~~~l~~~~~ 571 (1236)
|||++||..++..+.+.++++.+
T Consensus 173 ~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 173 VTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp TTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred ccccccccCCCCcHHHHHHHHHHHHH
Confidence 99999999999999998887643
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.28 E-value=2.4e-12 Score=147.00 Aligned_cols=163 Identities=15% Similarity=0.101 Sum_probs=106.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH----HHhcc--eEEEccCCCCCch-hHHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK----WIREK--IGLVSQEPVLLSS-SIRDNI 481 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~----~~r~~--i~~v~Q~~~l~~~-ti~~ni 481 (1236)
..++|++++|+|||||||||+++.|+|++.|++|+|.++|.|+...... .++++ +.+++|+..+++. +++||+
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~~~p~~~v~e~l 204 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYGADPAAVAYDAI 204 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTTCCHHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEeccccCCHHHHHHHHH
Confidence 3478999999999999999999999999999999999999998765532 23444 5599999888764 999999
Q ss_pred hcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHH
Q 040099 482 AYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561 (1236)
Q Consensus 482 ~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~ 561 (1236)
.++.. .+. +.+ =+||. |... .-..=.++.-.++|++..++++++||.+|. .|..
T Consensus 205 ~~~~~-------------~~~-d~v-----liDta-G~~~-~~~~l~~eL~~i~ral~~de~llvLDa~t~-~~~~---- 258 (328)
T 3e70_C 205 QHAKA-------------RGI-DVV-----LIDTA-GRSE-TNRNLMDEMKKIARVTKPNLVIFVGDALAG-NAIV---- 258 (328)
T ss_dssp HHHHH-------------HTC-SEE-----EEEEC-CSCC-TTTCHHHHHHHHHHHHCCSEEEEEEEGGGT-THHH----
T ss_pred HHHHh-------------ccc-hhh-----HHhhc-cchh-HHHHHHHHHHHHHHHhcCCCCEEEEecHHH-HHHH----
Confidence 76421 000 000 01111 1100 001112334459999999999999996665 3332
Q ss_pred HHHHHHHHc--cCceEEEEecCchh---------Hh-hcCeEEEEECCEE
Q 040099 562 VQEALDRVM--INRTTVIVSHRLSL---------IR-NANIIAVIQQGKI 599 (1236)
Q Consensus 562 i~~~l~~~~--~~~t~i~itH~~~~---------~~-~ad~i~vl~~G~i 599 (1236)
+.++.+. .+.|.|++||--.+ +. ..-.|..+..|+-
T Consensus 259 --~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~ 306 (328)
T 3e70_C 259 --EQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQG 306 (328)
T ss_dssp --HHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSS
T ss_pred --HHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCC
Confidence 2233332 37899999994322 11 2345777776653
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.28 E-value=1.5e-13 Score=140.14 Aligned_cols=88 Identities=17% Similarity=0.080 Sum_probs=72.3
Q ss_pred EeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEc
Q 040099 388 KDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467 (1236)
Q Consensus 388 ~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 467 (1236)
+|++++|+ +..+++++||++++|++++|+||||||||||+++|+|++ |++|+|.++|.++.+.. ..+ .+++
T Consensus 11 ~~~~~~~g---~~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~---~~~~ 81 (158)
T 1htw_A 11 EFSMLRFG---KKFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA---GKMI 81 (158)
T ss_dssp HHHHHHHH---HHHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET---TEEE
T ss_pred HHHHHHHH---HHHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC---Ccce
Confidence 45566774 246899999999999999999999999999999999999 99999999998874211 111 2899
Q ss_pred cCCCCCchhHHHHHh-cC
Q 040099 468 QEPVLLSSSIRDNIA-YG 484 (1236)
Q Consensus 468 Q~~~l~~~ti~~ni~-~g 484 (1236)
|++.+|.-|+.||+. +|
T Consensus 82 q~~~l~~ltv~e~l~~~g 99 (158)
T 1htw_A 82 YHFDLYRLADPEELEFMG 99 (158)
T ss_dssp EEEECTTCSCTTHHHHST
T ss_pred eccccccCCcHHHHHHcC
Confidence 999888779999985 45
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.28 E-value=3.1e-12 Score=140.46 Aligned_cols=145 Identities=15% Similarity=0.215 Sum_probs=90.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc--ccCC-----CCcEEEECCeecc-cCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR--FYDP-----SSGHITLDGVEIQ-KLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~-----~~G~I~idG~di~-~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
.|++|+.++|+||+|||||||++.|.+ ..+| ..|.+++++.+.- .-....+++++++.+|+ +.+|
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~~~~~~~~~~~~~~g~~~~~-------~~~~ 92 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGTFRPERLLAVAERYGLSGSD-------VLDN 92 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHHH-------HHHT
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCCcCHHHHHHHHHHcCCCHHH-------HhhC
Confidence 589999999999999999999999999 4554 5788999987631 11233445556665543 2233
Q ss_pred HHHHhhhchHHHhhhhchhhhhcCCCCCCChhHH-HHHHHHHHHc--cCCCEEEEecCCCCCCHH-------HHH-----
Q 040099 1107 IAEMANANGFISGLQEGYDTLVGERGVQLSGGQK-QRVAIARAIV--KEPKILLLDEATSALDIE-------SER----- 1171 (1236)
Q Consensus 1107 L~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQr-QRlaLARALl--r~p~ILlLDEaTSaLD~~-------te~----- 1171 (1236)
+. +. ...++.+. +.+.-+++++ .+|++|++||+|+.+|++ +++
T Consensus 93 ~~-----------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~~~~~~~~~~~~~~~r~~~~~ 150 (243)
T 1n0w_A 93 VA-----------YA-----------RAFNTDHQTQLLYQASAMMVESRYALLIVDSATALYRTDYSGRGELSARQMHLA 150 (243)
T ss_dssp EE-----------EE-----------ECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSGGGC-------CHHHHHHHHH
T ss_pred eE-----------EE-----------ecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchHHHHHHhcCCccHHHHHHHHH
Confidence 20 00 01233332 2333344444 589999999999999986 432
Q ss_pred HHHHHHHHHc--CCCeEEEEecCchhhh--------------------hcCEEEEEeCC
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRLSTIK--------------------NAHLIAVVSQG 1208 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl~ti~--------------------~aD~I~Vl~~G 1208 (1236)
.+.+.|++.. .++|+|+++|-..... .||.+++|+.|
T Consensus 151 ~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 151 RFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp HHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 2333344332 3799999999655432 48999999865
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.27 E-value=6.6e-12 Score=147.07 Aligned_cols=74 Identities=31% Similarity=0.427 Sum_probs=67.7
Q ss_pred CCCChHHHHHH------HHHHHhcCC-CCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEE
Q 040099 522 IQLSGGQKQRV------AIARAMIKD-PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 522 ~~LSgGqkqRi------aiARal~~~-p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
..||||||||+ ++|||+..+ |++|||||||++||+.+...+.+.|.++.+++++|+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 57999999988 678999999 99999999999999999999999999876667999999999865669999999
Q ss_pred E
Q 040099 595 Q 595 (1236)
Q Consensus 595 ~ 595 (1236)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.26 E-value=3.9e-12 Score=149.02 Aligned_cols=147 Identities=18% Similarity=0.268 Sum_probs=96.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHH--HHcCCCCCCc-----EEEECCeec-CCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISL--IQRFYDPQAG-----EVLIDGVNL-KEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~l--l~~~~~~~~G-----~i~~~g~~~-~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
-|++|++++|+||||||||||++. +.+..+|+.| .+++++.+. .......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 4566666444 888988763 12223334456666554 67788
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh--cCCCCEEEEeCcCCCCCHHH
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM--IKDPRILLLDEATSALDSES 558 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal--~~~p~ililDE~ts~lD~~~ 558 (1236)
+.+..+. +.++..+ .+.-++.+ -.+|+++++||||+.+|++.
T Consensus 247 i~~~~~~-~~~~~~~-----------------------------------~l~~~~~~l~~~~~~llVIDs~t~~~~~~~ 290 (400)
T 3lda_A 247 VAYARAY-NADHQLR-----------------------------------LLDAAAQMMSESRFSLIVVDSVMALYRTDF 290 (400)
T ss_dssp EEEEECC-SHHHHHH-----------------------------------HHHHHHHHHHHSCEEEEEEETGGGGCC---
T ss_pred EEEeccC-ChHHHHH-----------------------------------HHHHHHHHHHhcCCceEEecchhhhCchhh
Confidence 7775442 2222211 11111111 24799999999999999754
Q ss_pred H------------HHHHHHHHHHc--cCceEEEEecCc-------------------hhHhh-cCeEEEEECCE
Q 040099 559 G------------RMVQEALDRVM--INRTTVIVSHRL-------------------SLIRN-ANIIAVIQQGK 598 (1236)
Q Consensus 559 ~------------~~i~~~l~~~~--~~~t~i~itH~~-------------------~~~~~-ad~i~vl~~G~ 598 (1236)
. ..+.+.|+++. .+.|+|+|+|.. ..+.+ +|.+++|++|+
T Consensus 291 sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 291 SGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred cCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 3 45666676664 378999999982 22344 89999998763
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.26 E-value=2.3e-13 Score=138.75 Aligned_cols=86 Identities=12% Similarity=0.018 Sum_probs=71.6
Q ss_pred eEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEc
Q 040099 1014 LRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093 (1236)
Q Consensus 1014 ~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~ 1093 (1236)
++++++|.. ..+++++||+|++|++++|+||||||||||+++|.|++ |++|+|.++|.++.+.. ..+ + +++
T Consensus 11 ~~~~~~~g~---~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~--~~~-~--~~~ 81 (158)
T 1htw_A 11 EFSMLRFGK---KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY--NIA-G--KMI 81 (158)
T ss_dssp HHHHHHHHH---HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE--EET-T--EEE
T ss_pred HHHHHHHHH---HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec--cCC-C--cce
Confidence 355666742 35899999999999999999999999999999999999 99999999999885321 112 2 799
Q ss_pred CCCCCChhhHHHHHH
Q 040099 1094 QEPVLFSDTIRANIA 1108 (1236)
Q Consensus 1094 Qdp~LF~gTIreNL~ 1108 (1236)
|++.+|.-|+.||+.
T Consensus 82 q~~~l~~ltv~e~l~ 96 (158)
T 1htw_A 82 YHFDLYRLADPEELE 96 (158)
T ss_dssp EEEECTTCSCTTHHH
T ss_pred eccccccCCcHHHHH
Confidence 999999779999984
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.25 E-value=1.5e-14 Score=170.32 Aligned_cols=137 Identities=20% Similarity=0.278 Sum_probs=94.0
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc----CChHHHhc
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK----LQVKWLRQ 1087 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~----i~~~~lR~ 1087 (1236)
+++++++.|. ...+|+++ + .++|+.++|+|||||||||++++|+++++|.+|+|.++|.++.. ++...+++
T Consensus 145 ~l~~Lg~~~~---~~~~L~~l-~-~~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 145 DLHSLGMTAH---NHDNFRRL-I-KRPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CGGGSCCCHH---HHHHHHHH-H-TSSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CHHHcCCCHH---HHHHHHHH-H-HhcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 4445555443 12367777 5 38999999999999999999999999999999999999987742 11223455
Q ss_pred ceEEEc---------CCCCCC--h-----hhHHHHHHHHh-h-----------hchHHHhhhh-chhhhhcCCCCCCChh
Q 040099 1088 QMGVVS---------QEPVLF--S-----DTIRANIAEMA-N-----------ANGFISGLQE-GYDTLVGERGVQLSGG 1138 (1236)
Q Consensus 1088 ~i~~V~---------Qdp~LF--~-----gTIreNL~~~a-~-----------~~~~i~~lp~-Gldt~vge~G~~LSGG 1138 (1236)
++++.+ |+|.++ . .|+++|+.-.. + ..+.+..|.+ |++... ...+||||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~~~i~rL~~lgl~~~~--~~~~LSgg 297 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAVGAVTRLRDMGIEPFL--ISSSLLGV 297 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSHHHHHHHHHHTCCHHH--HHHHEEEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHHHHHHHHHHcCCcHHH--HHHHHHHH
Confidence 666644 999753 2 48888885211 0 1122333322 222211 23479999
Q ss_pred HHHHHHHHHHHccCCCEEE
Q 040099 1139 QKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1139 QrQRlaLARALlr~p~ILl 1157 (1236)
|+|| |||+++.+|++..
T Consensus 298 ~~QR--LaraL~~~p~~~~ 314 (418)
T 1p9r_A 298 LAQR--LVRTLCPDCKEPY 314 (418)
T ss_dssp EEEE--EEEEECTTTCEEE
T ss_pred HHHH--hhhhhcCCCCccC
Confidence 9999 9999999999875
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.25 E-value=7e-12 Score=146.04 Aligned_cols=137 Identities=18% Similarity=0.247 Sum_probs=78.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhc-ccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCC-hhhHHHHHHHHhhhchHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQR-FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF-SDTIRANIAEMANANGFI 1117 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r-~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF-~gTIreNL~~~a~~~~~i 1117 (1236)
..+.|+||+|+||||+++.|.+ ++.|..|.|.++|.++..... -+..+++++|++++. +.+-. .........+.+
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i 113 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSDM-GNNDRIVIQELL 113 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----CCHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhhc-CCcchHHHHHHH
Confidence 3499999999999999999999 899999999999988764332 277899999988653 11100 000000011111
Q ss_pred Hhhh--hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1118 SGLQ--EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1118 ~~lp--~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
..+- .+++..+ .||| +..+|+|+|||||++ ||.++...+.+.+.+...++++|++||+++.
T Consensus 114 ~~~~~~~~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 114 KEVAQMEQVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HHHTTTTC----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred HHHHHhccccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCCCEEEEEeCCHHH
Confidence 1110 0111111 4566 788999999999999 9999999999999987778899999999764
Q ss_pred h
Q 040099 1196 I 1196 (1236)
Q Consensus 1196 i 1196 (1236)
+
T Consensus 177 l 177 (354)
T 1sxj_E 177 I 177 (354)
T ss_dssp S
T ss_pred H
Confidence 3
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.24 E-value=3.3e-14 Score=171.98 Aligned_cols=173 Identities=17% Similarity=0.191 Sum_probs=116.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRD 479 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ 479 (1236)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|.++|.+--..+. +..++++.|...... .|.++
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~~~~~~~~~~ 324 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGMGEGEIDMYD 324 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCSSSCCBCHHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeecccccCCcCHHH
Confidence 47899999999999999999999999999999999999999999998865222221 345788888765221 27777
Q ss_pred HHhcC---CC------CCCHHHHHHHHHHhc-------------cHHHHHhC---CCCcccccc-------CCCCCCChH
Q 040099 480 NIAYG---KT------HATKEEIQAAAEAAN-------------ASHFIKNL---PQGLDTNVG-------EHGIQLSGG 527 (1236)
Q Consensus 480 ni~~g---~~------~~~~~~~~~~~~~~~-------------~~~~i~~l---~~g~~t~~g-------~~g~~LSgG 527 (1236)
++... +| ....+|...+.+.+. +.+.+.++ |.|....+. .....+|||
T Consensus 325 ~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~G 404 (511)
T 2oap_1 325 LLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRGN 404 (511)
T ss_dssp HHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESSS
T ss_pred HHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeCC
Confidence 76543 22 233344444444332 12223322 223322211 223458999
Q ss_pred HHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEE--EecCchhHhh-c
Q 040099 528 QKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVI--VSHRLSLIRN-A 588 (1236)
Q Consensus 528 qkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~--itH~~~~~~~-a 588 (1236)
||||.++|. + | |++||+.+.+.+.+.+.++.+ ++|+++ +||+++.+.. |
T Consensus 405 ~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~ 457 (511)
T 2oap_1 405 TRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFL 457 (511)
T ss_dssp CEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHH
T ss_pred CceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHc
Confidence 999987751 1 6 999999887766666666543 678875 8999998764 5
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.23 E-value=1.4e-11 Score=144.16 Aligned_cols=74 Identities=27% Similarity=0.358 Sum_probs=67.3
Q ss_pred CCCChhHHHHH------HHHHHHccC-CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEE
Q 040099 1133 VQLSGGQKQRV------AIARAIVKE-PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1133 ~~LSGGQrQRl------aLARALlr~-p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
..|||||+||+ |+|||+..+ |++|||||||++||+.+...+.+.|++...++|||+|||+++....||++++|
T Consensus 279 ~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~~~~~~d~~~~l 358 (371)
T 3auy_A 279 DNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRELEDVADVIINV 358 (371)
T ss_dssp GGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGGGGGGCSEEEEE
T ss_pred HhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHHHHhhCCEEEEE
Confidence 46999999987 678999999 99999999999999999999999999865567999999999865679999999
Q ss_pred e
Q 040099 1206 S 1206 (1236)
Q Consensus 1206 ~ 1206 (1236)
+
T Consensus 359 ~ 359 (371)
T 3auy_A 359 K 359 (371)
T ss_dssp E
T ss_pred E
Confidence 7
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.23 E-value=5.4e-12 Score=146.99 Aligned_cols=138 Identities=19% Similarity=0.236 Sum_probs=79.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-CCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC-chhHHHHHhcCCCCCCHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQR-FYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHATKEE 492 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~-~~ti~~ni~~g~~~~~~~~ 492 (1236)
.+.|+||+|+||||+++.++| ++.|+.|.+.++|.+...... .+..+++++|++++. +.+- .+. .....
T Consensus 38 ~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~ 108 (354)
T 1sxj_E 38 HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTASN--RKLELNVVSSPYHLEITPSD-----MGN--NDRIV 108 (354)
T ss_dssp CEEEECSTTSSHHHHHHTHHHHHSCTTCCC--------------------CCEECSSEEEECCC-----------CCHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeeccccc--ccceeeeecccceEEecHhh-----cCC--cchHH
Confidence 499999999999999999999 899999999999987654322 266799999988652 1110 011 11112
Q ss_pred HHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccC
Q 040099 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMIN 572 (1236)
Q Consensus 493 ~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~ 572 (1236)
+.+..+.+ .... +++..+ .||| +..+|+++|+|||++ ||+.+...+.+.+++...+
T Consensus 109 ~~~~i~~~-----~~~~--~~~~~~-----~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le~~~~~ 164 (354)
T 1sxj_E 109 IQELLKEV-----AQME--QVDFQD-----SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTMEKYSKN 164 (354)
T ss_dssp HHHHHHHH-----TTTT--C----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTT
T ss_pred HHHHHHHH-----HHhc--cccccc-----cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHHhhcCC
Confidence 33322221 1111 122111 5676 788999999999999 9999999999999987777
Q ss_pred ceEEEEecCchhH
Q 040099 573 RTTVIVSHRLSLI 585 (1236)
Q Consensus 573 ~t~i~itH~~~~~ 585 (1236)
.++|++||+++.+
T Consensus 165 ~~~Il~t~~~~~l 177 (354)
T 1sxj_E 165 IRLIMVCDSMSPI 177 (354)
T ss_dssp EEEEEEESCSCSS
T ss_pred CEEEEEeCCHHHH
Confidence 8999999997643
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.22 E-value=2.9e-13 Score=149.43 Aligned_cols=133 Identities=21% Similarity=0.240 Sum_probs=95.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHh---cccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhh-
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQ---RFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMAN- 1112 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~---r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~- 1112 (1236)
++++++|+|++||||||++++|. |+..|+.|+|.++|.+.. ..++..+..++|++.++. .|+.+|+.....
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~----~~~~~~i~~~~~~~~~~~~~~v~~~l~~~l~~ 101 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAS----TEVGEMAKQYIEKSLLVPDHVITRLMMSELEN 101 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTT----CHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHT
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcC----ChHHHHHHHHHHcCCCCCHHHHHHHHHHHHHh
Confidence 47999999999999999999999 999999999999886532 234556667788776554 589999864211
Q ss_pred -------hchH------HHhhh--hc--------------hhhhhcCCCCCCChhHHHHHHHHHHH-ccCCCEEEEe---
Q 040099 1113 -------ANGF------ISGLQ--EG--------------YDTLVGERGVQLSGGQKQRVAIARAI-VKEPKILLLD--- 1159 (1236)
Q Consensus 1113 -------~~~~------i~~lp--~G--------------ldt~vge~G~~LSGGQrQRlaLARAL-lr~p~ILlLD--- 1159 (1236)
+.++ ...+. .+ ++-........||| |+ ||+ +.+|++++||
T Consensus 102 ~~~~~~il~g~~~~~~~~~~l~~~~~~~~vi~L~~~~~~~l~r~~~r~~~~lSg----rv---~al~~~~P~~lllD~~~ 174 (246)
T 2bbw_A 102 RRGQHWLLDGFPRTLGQAEALDKICEVDLVISLNIPFETLKDRLSRRWIHPPSG----RV---YNLDFNPPHVHGIDDVT 174 (246)
T ss_dssp CTTSCEEEESCCCSHHHHHHHHTTCCCCEEEEEECCHHHHHHHHHTEEEETTTT----EE---EETTTSCCSSTTBCTTT
T ss_pred cCCCeEEEECCCCCHHHHHHHHhhcCCCEEEEEECCHHHHHHHHHcCCCcCCCC----Cc---cccccCCCccccccccc
Confidence 1110 11110 01 11111233446888 55 788 9999999999
Q ss_pred -cCCCCCCHHHHHHHHHHHHHHc
Q 040099 1160 -EATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1160 -EaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
|||+++|..++..+.+.++++.
T Consensus 175 ~EP~~~ld~~~~~~i~~~l~~~~ 197 (246)
T 2bbw_A 175 GEPLVQQEDDKPEAVAARLRQYK 197 (246)
T ss_dssp CCBCBCCGGGSHHHHHHHHHHHH
T ss_pred ccccccCCCCcHHHHHHHHHHHH
Confidence 9999999999999999998764
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.19 E-value=5.9e-14 Score=169.75 Aligned_cols=158 Identities=15% Similarity=0.182 Sum_probs=106.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh--hHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD--TIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g--TIr 1104 (1236)
.+++++++.+++|+.++|+|||||||||++++|+|+++|++|.|+|+|.+--..+. +..+++++|++. ..+ |.+
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~---~~~v~~~~r~~~-~~~~~~~~ 323 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYH---ENWIAEVTRTGM-GEGEIDMY 323 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCC---SSEEEEECBCCS-SSCCBCHH
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCC---CCeEEEEeeccc-ccCCcCHH
Confidence 47899999999999999999999999999999999999999999999865222221 345667776654 221 444
Q ss_pred HHHH------------------------HHhh-------------hchHHHhhh---hchhhhhc-------CCCCCCCh
Q 040099 1105 ANIA------------------------EMAN-------------ANGFISGLQ---EGYDTLVG-------ERGVQLSG 1137 (1236)
Q Consensus 1105 eNL~------------------------~~a~-------------~~~~i~~lp---~Gldt~vg-------e~G~~LSG 1137 (1236)
+++. +.++ +.+.+..+. .|+...+. .....+|+
T Consensus 324 ~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~~~s~ 403 (511)
T 2oap_1 324 DLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTMWVRG 403 (511)
T ss_dssp HHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEEEESS
T ss_pred HHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEEEEeC
Confidence 4442 1111 011122111 11111111 12235799
Q ss_pred hHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEE--EecCchhhhh-cC
Q 040099 1138 GQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLV--VAHRLSTIKN-AH 1200 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~--IaHRl~ti~~-aD 1200 (1236)
|||||.|+|. + | |++||+++.+.+.+.|.++.+ ++|+++ +||+++.+.. |+
T Consensus 404 G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g 458 (511)
T 2oap_1 404 NTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLG 458 (511)
T ss_dssp SCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHT
T ss_pred CCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcC
Confidence 9999988751 1 7 999999988777776665543 678875 8999998864 54
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.19 E-value=1.5e-11 Score=124.37 Aligned_cols=91 Identities=19% Similarity=0.245 Sum_probs=69.6
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56666 8999999999999999999999999987 57 555554332110
Q ss_pred HHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHH
Q 040099 480 NIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~ 559 (1236)
+++.+|++|+||||++ +|...+
T Consensus 79 ---------------------------------------------------------~~~~~~~lLilDE~~~-~~~~~~ 100 (149)
T 2kjq_A 79 ---------------------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQ 100 (149)
T ss_dssp ---------------------------------------------------------GGGGGCSEEEEESTTC-CCSHHH
T ss_pred ---------------------------------------------------------HHHhCCCEEEEeCccc-cChHHH
Confidence 2457899999999998 665557
Q ss_pred HHHHHHHHHHc-cCce-EEEEecC
Q 040099 560 RMVQEALDRVM-INRT-TVIVSHR 581 (1236)
Q Consensus 560 ~~i~~~l~~~~-~~~t-~i~itH~ 581 (1236)
+.+.+.++++. ++++ +|++||+
T Consensus 101 ~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 101 ALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp HHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHHHHHHHHHHHcCCcEEEEECCC
Confidence 88888887764 4677 7777775
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.19 E-value=2.1e-12 Score=148.18 Aligned_cols=114 Identities=15% Similarity=0.119 Sum_probs=75.0
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC-CCCcEEEEC-CeecccCChHHHhcceEEEcCCCCCChh-hHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD-PSSGHITLD-GVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIR 1104 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-~~~G~I~id-G~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIr 1104 (1236)
-++++++. .+|++++|+||||||||||+++|.|... |..|+|.++ |.+.. ...+++++++||++.+++. |++
T Consensus 205 gl~~L~~~-~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~----tt~~~~i~~v~q~~~l~dtpgv~ 279 (358)
T 2rcn_A 205 GLKPLEEA-LTGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQH----TTTAARLYHFPHGGDVIDSPGVR 279 (358)
T ss_dssp THHHHHHH-HTTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC-----------------CCCEEEECTTSCEEEECHHHH
T ss_pred CHHHHHHh-cCCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCcc----ceEEEEEEEECCCCEecCcccHH
Confidence 46777775 4899999999999999999999999999 999999997 76653 2356789999999988764 887
Q ss_pred HHHH------H-HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1105 ANIA------E-MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1105 eNL~------~-~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
++-. + .....++...+ |+....+....++| ||+||++||+++
T Consensus 280 e~~l~~l~~~e~~~~~~e~l~~~--gl~~f~~~~~~~lS-G~~~r~ala~gl 328 (358)
T 2rcn_A 280 EFGLWHLEPEQITQGFVEFHDYL--GHCKYRDCKHDADP-GCAIREAVENGA 328 (358)
T ss_dssp TCCCCCCCHHHHHHTSGGGGGGT--TCSSSTTCCSSSCT-TCHHHHHHHHTS
T ss_pred HhhhcCCCHHHHHHHHHHHHHHc--CCchhcCCCcccCC-HHHHHHHHHhcC
Confidence 7521 0 01112222211 22222334456899 999999999976
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.18 E-value=1.8e-11 Score=123.80 Aligned_cols=92 Identities=20% Similarity=0.253 Sum_probs=71.6
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
+|+++ +|+.++|+||+|||||||++++.+.+.+ +| .+++++.++...
T Consensus 30 ~l~~~-----~g~~~~l~G~~G~GKTtL~~~i~~~~~~-~g~~~~~~~~~~~~~~------------------------- 78 (149)
T 2kjq_A 30 VLRHK-----HGQFIYVWGEEGAGKSHLLQAWVAQALE-AGKNAAYIDAASMPLT------------------------- 78 (149)
T ss_dssp HCCCC-----CCSEEEEESSSTTTTCHHHHHHHHHHHT-TTCCEEEEETTTSCCC-------------------------
T ss_pred HHHhc-----CCCEEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEcHHHhhHH-------------------------
Confidence 56776 9999999999999999999999999987 57 666666543221
Q ss_pred HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCC
Q 040099 1106 NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDR 1184 (1236)
Q Consensus 1106 NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~ 1184 (1236)
+++.+|++|+||||++ +|...++.+.+.++... +++
T Consensus 79 ------------------------------------------~~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~ 115 (149)
T 2kjq_A 79 ------------------------------------------DAAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGK 115 (149)
T ss_dssp ------------------------------------------GGGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTC
T ss_pred ------------------------------------------HHHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCC
Confidence 2467899999999998 66655888888887654 357
Q ss_pred e-EEEEecCc
Q 040099 1185 T-TLVVAHRL 1193 (1236)
Q Consensus 1185 T-vI~IaHRl 1193 (1236)
| +|+++|+.
T Consensus 116 ~~iiits~~~ 125 (149)
T 2kjq_A 116 GFLLLGSEYT 125 (149)
T ss_dssp CEEEEEESSC
T ss_pred cEEEEECCCC
Confidence 7 77777753
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.16 E-value=4.9e-13 Score=152.49 Aligned_cols=141 Identities=18% Similarity=0.179 Sum_probs=100.1
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEe-------------------cCCCEEEEEcCCCCChHHHHHHHhcccC--C
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTI-------------------PPGKTIALVGESGSGKSTVISLLQRFYD--P 1065 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I-------------------~~Ge~vaIVG~SGSGKSTL~~lL~r~~~--~ 1065 (1236)
..+.|+++||++.|. ++++++|+.+ ++|+++||+|+||||||||+++|.+++. |
T Consensus 34 ~~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~ 108 (308)
T 1sq5_A 34 INEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWP 108 (308)
T ss_dssp HCTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTST
T ss_pred CccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCC
Confidence 346799999999993 4899999998 9999999999999999999999999998 9
Q ss_pred CCcEEEE---CCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHH
Q 040099 1066 SSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQ 1141 (1236)
Q Consensus 1066 ~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQ 1141 (1236)
++|+|.+ ||.+.. ...++.++++ |+..++. -|+.+|+.....+ ..|-+ .+...-.+.+.+ +
T Consensus 109 ~~G~i~vi~~d~~~~~----~~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~l-------~~~~~-~i~~P~~~~~~~--~ 173 (308)
T 1sq5_A 109 EHRRVELITTDGFLHP----NQVLKERGLM-KKKGFPESYDMHRLVKFVSDL-------KSGVP-NVTAPVYSHLIY--D 173 (308)
T ss_dssp TCCCEEEEEGGGGBCC----HHHHHHHTCT-TCTTSGGGBCHHHHHHHHHHH-------TTTCS-CEEECCEETTTT--E
T ss_pred CCCeEEEEecCCccCc----HHHHHhCCEe-ecCCCCCCccHHHHHHHHHHH-------hCCCC-ceeccccccccc--C
Confidence 9999999 987752 2456778999 7765543 4889987533222 11111 011111112222 3
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCH
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDI 1167 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~ 1167 (1236)
|+..+.+.+.+|+++|+|.|..-.|.
T Consensus 174 ~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 174 VIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp ECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred cccccceecCCCCEEEECchhhCCCc
Confidence 33333355678999999999887763
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.3e-14 Score=155.98 Aligned_cols=143 Identities=15% Similarity=0.181 Sum_probs=102.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCC-CCCc-hhHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEP-VLLS-SSIR 478 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-~l~~-~ti~ 478 (1236)
.+++++++++++| ++|+||||||||||+++|+|.+.+ |.|.++|.++.+......++++++++|++ ..++ -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4899999999999 999999999999999999999877 79999999887655555677899999985 3333 3667
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC------
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS------ 552 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts------ 552 (1236)
|||....+.....+.. .......++ ...|||||+||..|++|+..+|++| |||+.
T Consensus 110 Deid~~~~~r~~~~~~------~~~~~~~~~-----------l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd 170 (274)
T 2x8a_A 110 DEVDALCPRRSDRETG------ASVRVVNQL-----------LTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLD 170 (274)
T ss_dssp ETCTTTCC---------------CTTHHHHH-----------HHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSC
T ss_pred ehhhhhhcccCCCcch------HHHHHHHHH-----------HHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCC
Confidence 7776543221111100 011112222 2369999999999999999999975 99974
Q ss_pred ------CCCHHHHHHHHHHH
Q 040099 553 ------ALDSESGRMVQEAL 566 (1236)
Q Consensus 553 ------~lD~~~~~~i~~~l 566 (1236)
.-|.+.+..|++.+
T Consensus 171 ~~i~~~~P~~~~r~~il~~~ 190 (274)
T 2x8a_A 171 KTLFVGLPPPADRLAILKTI 190 (274)
T ss_dssp EEEECCSCCHHHHHHHHHHH
T ss_pred eEEEeCCcCHHHHHHHHHHH
Confidence 33666766676654
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=2.4e-11 Score=142.23 Aligned_cols=146 Identities=13% Similarity=0.168 Sum_probs=94.5
Q ss_pred EecCCCEEEEEcCCCCChHHHHHH--HhcccCCCC-----cEEEECCeec-ccCChHHHhcceEEEcCCCCCChhhHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISL--LQRFYDPSS-----GHITLDGVEI-QKLQVKWLRQQMGVVSQEPVLFSDTIRAN 1106 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~l--L~r~~~~~~-----G~I~idG~di-~~i~~~~lR~~i~~V~Qdp~LF~gTIreN 1106 (1236)
-|++|+.++|+||||||||||++. +.+..+++. +.|++|+.+. +......+++++++.+| ++.+|
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~rl~~~a~~~gl~~~-------~vlen 246 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPVRLVSIAQRFGLDPD-------DALNN 246 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHHHHHHHHHHTTCCHH-------HHHHT
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHHHHHHHHHHcCCChH-------hHhhc
Confidence 689999999999999999999994 456666543 4899998763 22223444566666554 44554
Q ss_pred HHHHhhhchHHHhhhhchhhhhcCCCCCCC-hhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHHH------------H
Q 040099 1107 IAEMANANGFISGLQEGYDTLVGERGVQLS-GGQKQRVAIARAIV--KEPKILLLDEATSALDIESE------------R 1171 (1236)
Q Consensus 1107 L~~~a~~~~~i~~lp~Gldt~vge~G~~LS-GGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~te------------~ 1171 (1236)
+. ++. ..+ ..+.+++.-+++++ .+|+++++||+|+.+|.+.. .
T Consensus 247 i~-----------~~~-----------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~~~~~~~sg~g~l~~Rq~~l~ 304 (400)
T 3lda_A 247 VA-----------YAR-----------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMALYRTDFSGRGELSARQMHLA 304 (400)
T ss_dssp EE-----------EEE-----------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGGGCC------CCHHHHHHHHH
T ss_pred EE-----------Eec-----------cCChHHHHHHHHHHHHHHHhcCCceEEecchhhhCchhhcCccchHHHHHHHH
Confidence 31 000 011 12344555455544 46999999999999997644 4
Q ss_pred HHHHHHHHHc--CCCeEEEEecCch-------------------hhhh-cCEEEEEeCCE
Q 040099 1172 VVQDALDQVM--VDRTTLVVAHRLS-------------------TIKN-AHLIAVVSQGM 1209 (1236)
Q Consensus 1172 ~I~~~L~~~~--~~~TvI~IaHRl~-------------------ti~~-aD~I~Vl~~G~ 1209 (1236)
.+.+.|+++. .++|||+|+|-.. .+.+ +|.+++|+.|+
T Consensus 305 ~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~~ 364 (400)
T 3lda_A 305 KFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKGK 364 (400)
T ss_dssp HHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEECS
T ss_pred HHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEecC
Confidence 4556666554 3789999999832 2343 89999998763
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.14 E-value=2.8e-12 Score=145.61 Aligned_cols=115 Identities=18% Similarity=0.144 Sum_probs=80.2
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHh-cceEEEccCCCCC------chhH
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIR-EKIGLVSQEPVLL------SSSI 477 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r-~~i~~v~Q~~~l~------~~ti 477 (1236)
+++.+|++++|+||||||||||+|+|. +.+|++|+|.+ +|.++..... ..+ +.+|||+|+|.+. ..|+
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~ 237 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP 237 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH
Confidence 355689999999999999999999999 99999999999 9988765432 222 3699999999552 3478
Q ss_pred HHHH--hcCC------------C-CCCHHHHHHHHHHhccHH-HHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 478 RDNI--AYGK------------T-HATKEEIQAAAEAANASH-FIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 478 ~~ni--~~g~------------~-~~~~~~~~~~~~~~~~~~-~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
||+ .|+. + ......+.++++..++.+ ...+.| ..|||.+++++.|||
T Consensus 238 -e~l~~~f~~~~~~~c~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~-----------~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 238 -REVRNYFREFLRYQCKYPDCTHTNEPGCAVKEAVKNGEISCERYKSYL-----------KIIKVYLEEIKELCR 300 (302)
T ss_dssp -GGGGGGCGGGHHHHHHSTTCCSSSCTTCHHHHHHHTTSSCHHHHHHHH-----------HHTTCCCTTHHHHSS
T ss_pred -HHHHHHHHHHHHccCCCCCCCCCCCCCCHHHHHHHcCCCCHHHHHHHH-----------HHHHHHHHHHHHHhc
Confidence 888 4430 1 112345777777777764 444443 369998899999987
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.14 E-value=3.8e-11 Score=125.62 Aligned_cols=111 Identities=16% Similarity=0.132 Sum_probs=77.1
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA 1111 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a 1111 (1236)
+|++++|+.++|+||+|+|||||++++.+.+.|.+|. +.+ -+..+.+.+..
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~----------------------------~~~~~~~~~~~ 83 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYF----------------------------FDTKDLIFRLK 83 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCE----------------------------EEHHHHHHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEE----------------------------EEHHHHHHHHH
Confidence 5678899999999999999999999999998766663 111 11222221111
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHc-CCCeEEEE
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVM-VDRTTLVV 1189 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~-~~~TvI~I 1189 (1236)
..++ .+. .. -....+.+|++|+||||++ ++|+.....+.+.++... +++|+|++
T Consensus 84 ----------~~~~----~~~--~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~ll~~~~~~~~~ii~t 139 (180)
T 3ec2_A 84 ----------HLMD----EGK--DT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYIITYRYNNLKSTIIT 139 (180)
T ss_dssp ----------HHHH----HTC--CS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred ----------HHhc----Cch--HH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHHHcCCCEEEE
Confidence 1011 000 00 1122345999999999996 899999999999887765 68899999
Q ss_pred ecCchh
Q 040099 1190 AHRLST 1195 (1236)
Q Consensus 1190 aHRl~t 1195 (1236)
||+...
T Consensus 140 sn~~~~ 145 (180)
T 3ec2_A 140 TNYSLQ 145 (180)
T ss_dssp CCCCSC
T ss_pred cCCChh
Confidence 998753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.13 E-value=8.1e-12 Score=130.74 Aligned_cols=111 Identities=15% Similarity=0.156 Sum_probs=75.2
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKT 486 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~ 486 (1236)
+|++++|+.++|+||+|+|||||++.+++.+.|.+|.. +.|+ +..+.+
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~------------------~~~~---------~~~~~~----- 79 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR------------------GYFF---------DTKDLI----- 79 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC------------------CCEE---------EHHHHH-----
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe------------------EEEE---------EHHHHH-----
Confidence 56788999999999999999999999999987776631 1111 111110
Q ss_pred CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHH
Q 040099 487 HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEA 565 (1236)
Q Consensus 487 ~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~ 565 (1236)
+++.... .. + ... -....+.+|++|+||||++ ++|+.....+.+.
T Consensus 80 ----~~~~~~~---------~~---~----------~~~--------~~~~~~~~~~llilDE~~~~~~~~~~~~~l~~l 125 (180)
T 3ec2_A 80 ----FRLKHLM---------DE---G----------KDT--------KFLKTVLNSPVLVLDDLGSERLSDWQRELISYI 125 (180)
T ss_dssp ----HHHHHHH---------HH---T----------CCS--------HHHHHHHTCSEEEEETCSSSCCCHHHHHHHHHH
T ss_pred ----HHHHHHh---------cC---c----------hHH--------HHHHHhcCCCEEEEeCCCCCcCCHHHHHHHHHH
Confidence 0111000 00 0 000 0112244999999999996 8999999999888
Q ss_pred HHHHc-cCceEEEEecCch
Q 040099 566 LDRVM-INRTTVIVSHRLS 583 (1236)
Q Consensus 566 l~~~~-~~~t~i~itH~~~ 583 (1236)
+.... +++++|++||...
T Consensus 126 l~~~~~~~~~ii~tsn~~~ 144 (180)
T 3ec2_A 126 ITYRYNNLKSTIITTNYSL 144 (180)
T ss_dssp HHHHHHTTCEEEEECCCCS
T ss_pred HHHHHHcCCCEEEEcCCCh
Confidence 87764 6789999999864
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.10 E-value=1e-12 Score=149.91 Aligned_cols=140 Identities=16% Similarity=0.206 Sum_probs=97.4
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEe-------------------cCCcEEEEEcCCCCcHHHHHHHHHcCCC--CC
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLI-------------------PNGTIAALVGTSGSGKSTVISLIQRFYD--PQ 440 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i-------------------~~g~~~~ivG~sGsGKSTl~~ll~~~~~--~~ 440 (1236)
++.|+++||++.|. ++++++++.+ ++|+++||+||||||||||+++|.|++. |+
T Consensus 35 ~~~i~~~~v~~~y~-----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~ 109 (308)
T 1sq5_A 35 NEDLSLEEVAEIYL-----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPE 109 (308)
T ss_dssp CTTCCHHHHHHTHH-----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTT
T ss_pred ccccchHhHHHHHH-----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCC
Confidence 45689999999993 5999999998 9999999999999999999999999998 99
Q ss_pred CcEEEE---CCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcccc
Q 040099 441 AGEVLI---DGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTN 516 (1236)
Q Consensus 441 ~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~ 516 (1236)
+|+|.+ ||.+. +. ..++.++++ |+..++. -|+.+|+.+... + ..-.+ --..| -++
T Consensus 110 ~G~i~vi~~d~~~~---~~-~~~~~~~~v-q~~~~~~~~~~~~~~~~~~~------l------~~~~~-~i~~P-~~~-- 168 (308)
T 1sq5_A 110 HRRVELITTDGFLH---PN-QVLKERGLM-KKKGFPESYDMHRLVKFVSD------L------KSGVP-NVTAP-VYS-- 168 (308)
T ss_dssp CCCEEEEEGGGGBC---CH-HHHHHHTCT-TCTTSGGGBCHHHHHHHHHH------H------TTTCS-CEEEC-CEE--
T ss_pred CCeEEEEecCCccC---cH-HHHHhCCEe-ecCCCCCCccHHHHHHHHHH------H------hCCCC-ceecc-ccc--
Confidence 999999 88764 22 345678999 7665543 377777654210 0 00000 00112 111
Q ss_pred ccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 517 VGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 517 ~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
.+.+ +|+..+.+.+.+|+++|+|.|....|.
T Consensus 169 -------~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~~ 199 (308)
T 1sq5_A 169 -------HLIY--DVIPDGDKTVVQPDILILEGLNVLQSG 199 (308)
T ss_dssp -------TTTT--EECTTCCEEEC-CCEEEEECTTTTCCG
T ss_pred -------cccc--CcccccceecCCCCEEEECchhhCCCc
Confidence 1111 333333456678999999999988774
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.03 E-value=2.9e-13 Score=147.94 Aligned_cols=135 Identities=18% Similarity=0.204 Sum_probs=56.2
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHH-cCC------------CCCCcEEEECCeecCCCCHHHHhcceEEEc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ-RFY------------DPQAGEVLIDGVNLKEFQLKWIREKIGLVS 467 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~-~~~------------~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~ 467 (1236)
...+++||++++|++++|+||||||||||+++|+ |++ +|..|++ +| ++|++
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g--------------~~~~~ 78 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EG--------------KDYYF 78 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BT--------------TTBEE
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CC--------------CeEEE
Confidence 4678999999999999999999999999999999 998 4444433 23 34555
Q ss_pred cCCCCCch-hHHHHHh---------cCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh--HHHHHH-HH
Q 040099 468 QEPVLLSS-SIRDNIA---------YGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG--GQKQRV-AI 534 (1236)
Q Consensus 468 Q~~~l~~~-ti~~ni~---------~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg--GqkqRi-ai 534 (1236)
|++..|.. +..+|+. ++.+. +++.++++... .-.+.- .+.| .-+++. .-
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~i~~~~~~~~------------~vild~---~~~g~~~~~~~~~~~ 140 (231)
T 3lnc_A 79 VDREEFLRLCSNGEIIEHAEVFGNFYGVPR---KNLEDNVDKGV------------STLLVI---DWQGAFKFMEMMREH 140 (231)
T ss_dssp CCHHHHHHHHHTTCEEEEEEETTEEEEEEC---TTHHHHHHHTC------------EEEEEC---CHHHHHHHHHHSGGG
T ss_pred ecHHHhhhhhhcCceehhhhhccccCCCCH---HHHHHHHHcCC------------eEEEEc---CHHHHHHHHHhcCCC
Confidence 55444332 2222322 22222 22333322211 000100 0111 113433 22
Q ss_pred HH-HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 535 AR-AMIKDPRILLLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 535 AR-al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
++ .++..|+..++||++++.|..++..+.+.+.+.
T Consensus 141 ~~~v~v~~~~~~~l~~Rl~~R~~~~~~~i~~rl~~~ 176 (231)
T 3lnc_A 141 VVSIFIMPPSMEELRRRLCGRRADDSEVVEARLKGA 176 (231)
T ss_dssp EEEEEEECSCHHHHHHC--------------CHHHH
T ss_pred eEEEEEECCcHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 22 346778888899999999998888887777554
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.03 E-value=5e-11 Score=140.14 Aligned_cols=141 Identities=21% Similarity=0.285 Sum_probs=87.5
Q ss_pred ccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC----------CC
Q 040099 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP----------VL 1098 (1236)
Q Consensus 1029 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp----------~L 1098 (1236)
-++++|++++|+.++|||++|||||||++.|.+..+ .+.+.+..++ ...+++|+|+. -+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftTl-----~p~~G~V~~~~~~~~~l~DtpGl 215 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTTL-----SPNLGVVEVSEEERFTLADIPGI 215 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCSS-----CCEEEEEECSSSCEEEEEECCCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCccccee-----cceeeEEEecCcceEEEEecccc
Confidence 479999999999999999999999999999999842 3344433332 23455555543 22
Q ss_pred Chh-h----HHHH-HHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHH
Q 040099 1099 FSD-T----IRAN-IAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172 (1236)
Q Consensus 1099 F~g-T----IreN-L~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~ 1172 (1236)
..+ + +... +.....++.++.- +|.. .+.-.+||+||+||.++||+|..+|.||++ +.+|......
T Consensus 216 i~~a~~~~~L~~~fl~~~era~~lL~v----vDls-~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~~~~~ 286 (416)
T 1udx_A 216 IEGASEGKGLGLEFLRHIARTRVLLYV----LDAA-DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLLEEEA 286 (416)
T ss_dssp CCCGGGSCCSCHHHHHHHTSSSEEEEE----EETT-SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTSCHHH
T ss_pred ccchhhhhhhhHHHHHHHHHHHhhhEE----eCCc-cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChhhHHH
Confidence 111 0 0000 1111111111110 1110 122236999999999999999999999999 9999976633
Q ss_pred HHHHHHHHc--CCCeEEEEe
Q 040099 1173 VQDALDQVM--VDRTTLVVA 1190 (1236)
Q Consensus 1173 I~~~L~~~~--~~~TvI~Ia 1190 (1236)
+ +.+.+.. .+.+++.||
T Consensus 287 ~-~~l~~~l~~~g~~vi~iS 305 (416)
T 1udx_A 287 V-KALADALAREGLAVLPVS 305 (416)
T ss_dssp H-HHHHHHHHTTTSCEEECC
T ss_pred H-HHHHHHHHhcCCeEEEEE
Confidence 3 3333332 356777765
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.02 E-value=2.8e-13 Score=151.69 Aligned_cols=143 Identities=16% Similarity=0.201 Sum_probs=98.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC-CCCh-hhHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP-VLFS-DTIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp-~LF~-gTIr 1104 (1236)
.+++++++++++| ++|+||+|||||||+++|.+.+.+ |.|.++|.++........++++++++|++ ..+. -++.
T Consensus 34 ~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~~~~~~i~~vf~~a~~~~p~i~~~ 109 (274)
T 2x8a_A 34 DQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVGESERAVRQVFQRAKNSAPCVIFF 109 (274)
T ss_dssp HHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTHHHHHHHHHHHHHHHHTCSEEEEE
T ss_pred HHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhhHHHHHHHHHHHHHHhcCCCeEee
Confidence 4799999999999 999999999999999999999876 79999999987666666777888888875 2222 2444
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC------------CCCHHHHHH
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS------------ALDIESERV 1172 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS------------aLD~~te~~ 1172 (1236)
||++..+...+. .. .+.....+.+.-..|||||+||..+++|+..+|++| |||.. --|.+....
T Consensus 110 Deid~~~~~r~~-~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~gRfd~~i~~~~P~~~~r~~ 185 (274)
T 2x8a_A 110 DEVDALCPRRSD-RE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRPGRLDKTLFVGLPPPADRLA 185 (274)
T ss_dssp ETCTTTCC-----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHSTTSSCEEEECCSCCHHHHHH
T ss_pred ehhhhhhcccCC-Cc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCcccCCeEEEeCCcCHHHHHH
Confidence 554321110000 00 000001111112358999999999999999999985 99975 235666666
Q ss_pred HHHHH
Q 040099 1173 VQDAL 1177 (1236)
Q Consensus 1173 I~~~L 1177 (1236)
|.+.+
T Consensus 186 il~~~ 190 (274)
T 2x8a_A 186 ILKTI 190 (274)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 65554
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.02 E-value=5.5e-13 Score=145.68 Aligned_cols=186 Identities=14% Similarity=0.098 Sum_probs=73.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHh-ccc------------CCCCcEEEECCeecccCChHHHhcceEEEc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RFY------------DPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~~------------~~~~G~I~idG~di~~i~~~~lR~~i~~V~ 1093 (1236)
...+++||++++|+.+||+||||||||||+++|. +++ +|..|++ +|+++...+...++.. +.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~~~~~~~~~~~~~~~g~~--~g~~~~~~~~~~~~~~---~~ 89 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNNIVKSVSVTTRAARKGEK--EGKDYYFVDREEFLRL---CS 89 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----CEEECCCEESSCCCTTCC--BTTTBEECCHHHHHHH---HH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCCcccccccCCCCCCcccc--CCCeEEEecHHHhhhh---hh
Confidence 3578999999999999999999999999999999 998 4555543 4444333333333221 11
Q ss_pred CCCCCChhhHHHHHHHHhhhchHHH-hhhhchhhhhcCCCCCCChhHHHHH-HHHH-HHccCCCEEEEecCCCCCCHHHH
Q 040099 1094 QEPVLFSDTIRANIAEMANANGFIS-GLQEGYDTLVGERGVQLSGGQKQRV-AIAR-AIVKEPKILLLDEATSALDIESE 1170 (1236)
Q Consensus 1094 Qdp~LF~gTIreNL~~~a~~~~~i~-~lp~Gldt~vge~G~~LSGGQrQRl-aLAR-ALlr~p~ILlLDEaTSaLD~~te 1170 (1236)
++.+++.+++..|+.. ...+.+. .+..|....+.-.. .-...-++++ .-++ .++..|+..++||..++.|..++
T Consensus 90 ~~~~~~~~~~~~~~~~--~~~~~i~~~~~~~~~vild~~~-~g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~~R~~~~~ 166 (231)
T 3lnc_A 90 NGEIIEHAEVFGNFYG--VPRKNLEDNVDKGVSTLLVIDW-QGAFKFMEMMREHVVSIFIMPPSMEELRRRLCGRRADDS 166 (231)
T ss_dssp TTCEEEEEEETTEEEE--EECTTHHHHHHHTCEEEEECCH-HHHHHHHHHSGGGEEEEEEECSCHHHHHHC---------
T ss_pred cCceehhhhhccccCC--CCHHHHHHHHHcCCeEEEEcCH-HHHHHHHHhcCCCeEEEEEECCcHHHHHHHHHHcCCCCH
Confidence 1111111111111000 0000000 01111111111000 0001113333 2222 33567788889999999999999
Q ss_pred HHHHHHHHHHc------CCCeEEEEecCchhh-hhcCEEEEEeCCEEEEecChhHHh
Q 040099 1171 RVVQDALDQVM------VDRTTLVVAHRLSTI-KNAHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1171 ~~I~~~L~~~~------~~~TvI~IaHRl~ti-~~aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
..+++.|++.. ...+.+++.|.++.+ ...++++-...++....++..+++
T Consensus 167 ~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~~~~~~~~~~~~~~~~~ 223 (231)
T 3lnc_A 167 EVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILRAEQMKTCRQVGLRELL 223 (231)
T ss_dssp -----CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHHHHHTBGGGEESHHHHH
T ss_pred HHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHHHHhhccccCcchhhHh
Confidence 88887775432 134666777766654 335555544445544444444443
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.00 E-value=3e-10 Score=128.20 Aligned_cols=141 Identities=21% Similarity=0.174 Sum_probs=101.3
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH-Hhcce
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW-LRQQM 1089 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~-lR~~i 1089 (1236)
+.++++++.|... . ++++|+ +|+.++++|++|+||||++..|.+.+.+.+|+|.+.|.|+..-...+ ++
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~~ql~--- 146 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLR--- 146 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHHHHHH---
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHHHHHH---
Confidence 4566777888532 1 688888 99999999999999999999999999999999999988875321110 10
Q ss_pred EEEcCCCCCChhhHHHHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC-CCCCCHH
Q 040099 1090 GVVSQEPVLFSDTIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA-TSALDIE 1168 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa-TSaLD~~ 1168 (1236)
++ .+.. |++-.. .+..-...+-||.+|+++...+++++|+||| ++++|..
T Consensus 147 ------------~~----~~~~-----------~l~~~~--~~~~~~p~~l~~~~l~~~~~~~~D~viiDtpp~~~~d~~ 197 (295)
T 1ls1_A 147 ------------LL----GEKV-----------GVPVLE--VMDGESPESIRRRVEEKARLEARDLILVDTAGRLQIDEP 197 (295)
T ss_dssp ------------HH----HHHH-----------TCCEEE--CCTTCCHHHHHHHHHHHHHHHTCCEEEEECCCCSSCCHH
T ss_pred ------------Hh----cccC-----------CeEEEE--cCCCCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccccHH
Confidence 11 1111 121110 1112345566899999998899999999999 9999998
Q ss_pred HHHHHHHHHHHHcCCCeEEEEe
Q 040099 1169 SERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1169 te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.-..+.+..+....+.+++++.
T Consensus 198 ~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 198 LMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp HHHHHHHHHHHHCCSEEEEEEE
T ss_pred HHHHHHHHhhhcCCCEEEEEEe
Confidence 8888888777666666665553
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=98.97 E-value=3.2e-11 Score=141.75 Aligned_cols=153 Identities=17% Similarity=0.121 Sum_probs=91.0
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHh
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIA 482 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~ 482 (1236)
-++++|++++|+.++|||+||||||||++.|++..+ .+.+.+... +...+++|.|+.. ..-++.|+.-
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT-----l~p~~G~V~~~~~-~~~~l~DtpG 214 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT-----LSPNLGVVEVSEE-ERFTLADIPG 214 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS-----SCCEEEEEECSSS-CEEEEEECCC
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce-----ecceeeEEEecCc-ceEEEEeccc
Confidence 478999999999999999999999999999999743 344443332 2345777777541 0112222211
Q ss_pred cCC-----CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHH
Q 040099 483 YGK-----THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSE 557 (1236)
Q Consensus 483 ~g~-----~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~ 557 (1236)
+.. ...... ..+..+.+. ..+.-+ +.. .+...+||+||+||+++||+|..+|.|+++ +.+|..
T Consensus 215 li~~a~~~~~L~~~-fl~~~era~--~lL~vv--Dls---~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NKlDl~ 282 (416)
T 1udx_A 215 IIEGASEGKGLGLE-FLRHIARTR--VLLYVL--DAA---DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NKVDLL 282 (416)
T ss_dssp CCCCGGGSCCSCHH-HHHHHTSSS--EEEEEE--ETT---SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----ECCTTS
T ss_pred cccchhhhhhhhHH-HHHHHHHHH--hhhEEe--CCc---cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----ECCChh
Confidence 110 001111 111111111 111111 010 122346999999999999999999999999 999987
Q ss_pred HHHHHHHHHHH-Hc-cCceEEEEec
Q 040099 558 SGRMVQEALDR-VM-INRTTVIVSH 580 (1236)
Q Consensus 558 ~~~~i~~~l~~-~~-~~~t~i~itH 580 (1236)
.. ...+.+.+ +. .+.+++.||.
T Consensus 283 ~~-~~~~~l~~~l~~~g~~vi~iSA 306 (416)
T 1udx_A 283 EE-EAVKALADALAREGLAVLPVSA 306 (416)
T ss_dssp CH-HHHHHHHHHHHTTTSCEEECCT
T ss_pred hH-HHHHHHHHHHHhcCCeEEEEEC
Confidence 65 33333333 32 3567776664
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=8.8e-10 Score=124.34 Aligned_cols=138 Identities=14% Similarity=0.184 Sum_probs=95.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~ 1116 (1236)
++|+.++++|++||||||++..|.+.+.+.+| +++.++.+|+ |..+..|++...+...
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~--~r~~a~eqL~~~~~~~-- 160 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDT--YRIAAVEQLKTYAELL-- 160 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCC--SSTTHHHHHHHHHTTT--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCc--ccchHHHHHHHHHHhc--
Confidence 57999999999999999999999999988777 3577788887 4556667665333221
Q ss_pred HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc---CCCeEEEE--ec
Q 040099 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM---VDRTTLVV--AH 1191 (1236)
Q Consensus 1117 i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~---~~~TvI~I--aH 1191 (1236)
|++-... .+ ++..+.+|+++ ++|+++|+| |+++|+..+..+.+..+-.. .+.+++++ +|
T Consensus 161 ------gl~~~~~-----~~-~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~~~~~~~~~lVl~at~ 224 (296)
T 2px0_A 161 ------QAPLEVC-----YT-KEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIPFESSIQSFLVLSATA 224 (296)
T ss_dssp ------TCCCCBC-----SS-HHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSCCCTTEEEEEEEETTB
T ss_pred ------CCCeEec-----CC-HHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHhhcCCCeEEEEEECCC
Confidence 1111111 12 34456777764 999999999 99999887766665443322 23456666 89
Q ss_pred Cchhhhh-cCEEEEEeCCEEEE
Q 040099 1192 RLSTIKN-AHLIAVVSQGMIVE 1212 (1236)
Q Consensus 1192 Rl~ti~~-aD~I~Vl~~G~Ive 1212 (1236)
..+.+.. +|++..++.|.|+-
T Consensus 225 ~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 225 KYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CHHHHHHHTTTTSSSCCCEEEE
T ss_pred CHHHHHHHHHHHhcCCCCEEEE
Confidence 9887765 77665566666664
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.96 E-value=7.8e-11 Score=133.70 Aligned_cols=103 Identities=17% Similarity=0.174 Sum_probs=69.5
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHhcceEEEccCCC-------------
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIREKIGLVSQEPV------------- 471 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~------------- 471 (1236)
|++.+|++++|+||||||||||+|+|.|+..|++|+|.+ +|.++.........+.+|||+|+|.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~~~~~~~~~~~~ 243 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFANLEINDIEPEE 243 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSSTTCCCCSSCHHH
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCCccCCCcCCHHH
Confidence 566789999999999999999999999999999999999 8988865442111236899999985
Q ss_pred ---CCch-hHHHHHhcCCC---CCCHHHHHHHHHHhcc-HHHHHhCCC
Q 040099 472 ---LLSS-SIRDNIAYGKT---HATKEEIQAAAEAANA-SHFIKNLPQ 511 (1236)
Q Consensus 472 ---l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~-~~~i~~l~~ 511 (1236)
+|+. |+ +|+.|+.. ......+.++++..++ .+...+.|.
T Consensus 244 ~~~l~~~~~~-~n~~~~~~~~~~e~~~~v~~~l~~~~L~~~~~~~~~~ 290 (301)
T 1u0l_A 244 LKHYFKEFGD-KQCFFSDCNHVDEPECGVKEAVENGEIAESRYENYVK 290 (301)
T ss_dssp HGGGSTTSSS-CCCSSTTCCSSSCSSCHHHHHHHHTSSCHHHHHHHHH
T ss_pred HHHHHHhccc-ccCcCCCCcCCCCCCcHHHHHHHcCCCCHHHHHHHHH
Confidence 3544 78 99988531 1224568888888888 366666553
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.90 E-value=9.3e-11 Score=125.16 Aligned_cols=125 Identities=10% Similarity=0.037 Sum_probs=76.8
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHHHHHh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMA 1111 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~a 1111 (1236)
|+++++|+.+||+||||||||||+++|.++++ .+.++|.++...+....+..++|++|++.+|.. +..+|+.+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLEHA 76 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEeee
Confidence 67889999999999999999999999999974 688999888776655667889999999987765 4444432111
Q ss_pred hhchHHHhhh-hchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1112 NANGFISGLQ-EGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1112 ~~~~~i~~lp-~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
..++.....+ ...+..+.++..-+-.+..|-+.-++....++.+++++.|
T Consensus 77 ~~~~~~~~~~~~~i~~~l~~g~~vi~d~~~~~~~~~~~~~~~~~~v~~~~~ 127 (205)
T 3tr0_A 77 TIYERHYGTEKDWVLRQLKAGRDVLLEIDWQGARQIRELFPPALSIFILPP 127 (205)
T ss_dssp EETTEEEEEEHHHHHHHHHTTCEEEEECCHHHHHHHHHHCTTCEEEEEECS
T ss_pred eeecccccchHHHHHHHHHcCCeEEEEECHHHHHHHHHhCCCcEEEEEECc
Confidence 1110000000 0011111121112223455556666666777777777766
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.88 E-value=6.1e-10 Score=125.84 Aligned_cols=111 Identities=17% Similarity=0.323 Sum_probs=77.5
Q ss_pred eeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC
Q 040099 406 FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK 485 (1236)
Q Consensus 406 i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~ 485 (1236)
++++.++|++++|+||+||||||++..|++.+.++.|+|.+.+.|... ....
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r---------------------~~a~------- 148 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFR---------------------AAAI------- 148 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTC---------------------HHHH-------
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcccccc---------------------HHHH-------
Confidence 345567899999999999999999999999999999999887765421 0111
Q ss_pred CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH---HHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 486 THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV---AIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 486 ~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi---aiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
+++...++.. |++. + ..+|||+.|++ +|+||+.++|+++|+|+|.. ......+
T Consensus 149 -----eqL~~~~~~~-----------gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~---~~~~~~l 204 (306)
T 1vma_A 149 -----EQLKIWGERV-----------GATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR---LHTKKNL 204 (306)
T ss_dssp -----HHHHHHHHHH-----------TCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC---CSCHHHH
T ss_pred -----HHHHHHHHHc-----------CCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc---hhhHHHH
Confidence 1122222222 2221 1 24689999999 99999999999999999974 2333444
Q ss_pred HHHHHH
Q 040099 563 QEALDR 568 (1236)
Q Consensus 563 ~~~l~~ 568 (1236)
++.+.+
T Consensus 205 ~~eL~~ 210 (306)
T 1vma_A 205 MEELRK 210 (306)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444443
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.88 E-value=2.5e-11 Score=131.91 Aligned_cols=129 Identities=16% Similarity=0.208 Sum_probs=100.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC---CCCCcEEEE--------CCeecCC-CCHHHHhcceEEEccCC------CCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY---DPQAGEVLI--------DGVNLKE-FQLKWIREKIGLVSQEP------VLL 473 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~---~~~~G~i~~--------~g~~~~~-~~~~~~r~~i~~v~Q~~------~l~ 473 (1236)
.+.+++|+||+||||||++++|.+.+ .++.|.+.. +|.++.+ ....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 788999887 6777653 45667889999999976 345
Q ss_pred chhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccc-cCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCC
Q 040099 474 SSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNV-GEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552 (1236)
Q Consensus 474 ~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~-g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts 552 (1236)
..++.+++. .+++..++..+..++++...+.+..+.+ .++|.-++|+ .++++++.+++++|+.+++.
T Consensus 84 ~~~v~~~~~-------~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIR-------TQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHT-------SHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhC-------CHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 557777763 4678888888888888877665655544 3456678887 56777889999999988753
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.87 E-value=6.2e-10 Score=132.38 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=55.4
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ 455 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~ 455 (1236)
.+.+++... ..+|+|+||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++...+
T Consensus 8 ~l~~l~~~~-----~~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 8 KFRSLTLIN-----WNGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp EEEEEEEEE-----ETTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ceeEEEEec-----cccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 455555432 2489999999999 999999999999999999999999999999999999886544
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=98.87 E-value=2.9e-09 Score=120.37 Aligned_cols=98 Identities=19% Similarity=0.334 Sum_probs=74.0
Q ss_pred eeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHh
Q 040099 1032 LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMA 1111 (1236)
Q Consensus 1032 is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a 1111 (1236)
++++.++|+.++|+|++||||||++..|.+.+.+.+|+|.+.+.|+... ...+++...+
T Consensus 97 ~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~r~---------------------~a~eqL~~~~ 155 (306)
T 1vma_A 97 LNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTFRA---------------------AAIEQLKIWG 155 (306)
T ss_dssp CCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTTCH---------------------HHHHHHHHHH
T ss_pred CcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccccH---------------------HHHHHHHHHH
Confidence 4566789999999999999999999999999999999999988775321 1123332221
Q ss_pred hhchHHHhhhhchhhhhcCCCCCCChhHHHHH---HHHHHHccCCCEEEEecCCC
Q 040099 1112 NANGFISGLQEGYDTLVGERGVQLSGGQKQRV---AIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1112 ~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRl---aLARALlr~p~ILlLDEaTS 1163 (1236)
. . .|++. + ...|||+.|++ +++||+.++|+++|+|||..
T Consensus 156 ~------~--~gl~~-~----~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 156 E------R--VGATV-I----SHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp H------H--HTCEE-E----CCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred H------H--cCCcE-E----ecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 1 1 12221 1 23589999999 99999999999999999984
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-11 Score=128.34 Aligned_cols=121 Identities=17% Similarity=0.178 Sum_probs=94.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc---CCCCcEEEE--------CCeecc-cCChHHHhcceEEEcCCC------CCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY---DPSSGHITL--------DGVEIQ-KLQVKWLRQQMGVVSQEP------VLF 1099 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~---~~~~G~I~i--------dG~di~-~i~~~~lR~~i~~V~Qdp------~LF 1099 (1236)
.+.++||+|++||||||++++|.+.| .++.|.|.. +|.++. +....++++++++++|++ .++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 83 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASEDALVPLASHLDVRFVSTNGNLEVILE 83 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEEEEETTEEEEEET
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHHHHHHHHHhCceeeeccCCCceEEEC
Confidence 35789999999999999999999877 678899988 788775 356778999999999986 456
Q ss_pred hhhHHHHHH--------HHhhhchHHHhhhhchhhhhc-CCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1100 SDTIRANIA--------EMANANGFISGLQEGYDTLVG-ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1100 ~gTIreNL~--------~~a~~~~~i~~lp~Gldt~vg-e~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
..++.+++. ..+..++++.....+..+.+. ++|.-++|+ .++++++++++++|+.+++.
T Consensus 84 ~~~v~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~vldg~-----~~~~~~~~~~d~~i~l~~~~ 151 (227)
T 1cke_A 84 GEDVSGEIRTQEVANAASQVAAFPRVREALLRRQRAFRELPGLIADGR-----DMGTVVFPDAPVKIFLDASS 151 (227)
T ss_dssp TEECHHHHTSHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCEEEEES-----SCCCCCCTTCSEEEEEECCH
T ss_pred CeeCchhhCCHHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEECC-----CccceEecCCCEEEEEeCCH
Confidence 667777763 345567778777777766653 456678887 46777889999999988764
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=2.6e-09 Score=120.51 Aligned_cols=138 Identities=11% Similarity=0.171 Sum_probs=91.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATK 490 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~ 490 (1236)
++|++++++||+||||||++..|++.+.+++| +++.++.+|++ ..+..|++.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G------------------~~V~lv~~D~~--r~~a~eqL~-------- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH------------------KKIAFITTDTY--RIAAVEQLK-------- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC------------------CCEEEEECCCS--STTHHHHHH--------
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC------------------CEEEEEecCcc--cchHHHHHH--------
Confidence 47999999999999999999999999988778 25777777763 333333332
Q ss_pred HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc
Q 040099 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM 570 (1236)
Q Consensus 491 ~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~ 570 (1236)
..++.. |++-... ..++..+.+|+++ ++|+++|+| |+++|+.....+.+..+-+.
T Consensus 155 ----~~~~~~-----------gl~~~~~------~~~~~l~~al~~~--~~~dlvIiD--T~G~~~~~~~~~~el~~~l~ 209 (296)
T 2px0_A 155 ----TYAELL-----------QAPLEVC------YTKEEFQQAKELF--SEYDHVFVD--TAGRNFKDPQYIDELKETIP 209 (296)
T ss_dssp ----HHHTTT-----------TCCCCBC------SSHHHHHHHHHHG--GGSSEEEEE--CCCCCTTSHHHHHHHHHHSC
T ss_pred ----HHHHhc-----------CCCeEec------CCHHHHHHHHHHh--cCCCEEEEe--CCCCChhhHHHHHHHHHHHh
Confidence 111111 1111111 1234567788865 999999999 99999876655554333222
Q ss_pred ---cCceEEEE--ecCchhHhh-cCeEEEEECCEEEE
Q 040099 571 ---INRTTVIV--SHRLSLIRN-ANIIAVIQQGKIVE 601 (1236)
Q Consensus 571 ---~~~t~i~i--tH~~~~~~~-ad~i~vl~~G~i~~ 601 (1236)
.+.+++++ +|....+.. +|++..++.+.++-
T Consensus 210 ~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 210 FESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp CCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred hcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 22345555 898877765 77776667777765
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.85 E-value=2.7e-10 Score=125.97 Aligned_cols=79 Identities=22% Similarity=0.215 Sum_probs=64.6
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHh---cccCCCCcEEE--------ECCeecc-cCChHHHhcceEEEcC
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ---RFYDPSSGHIT--------LDGVEIQ-KLQVKWLRQQMGVVSQ 1094 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~---r~~~~~~G~I~--------idG~di~-~i~~~~lR~~i~~V~Q 1094 (1236)
.++++.+ ++|++++|+|||||||||++++|. |++.|++|.|. .+|.++. ......+++++++++|
T Consensus 18 ~~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~ 94 (252)
T 4e22_A 18 LERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFV 94 (252)
T ss_dssp -----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEE
T ss_pred hhhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEe
Confidence 3555544 899999999999999999999999 99999999999 9999994 5568899999999996
Q ss_pred C------CCCChhhHHHHHH
Q 040099 1095 E------PVLFSDTIRANIA 1108 (1236)
Q Consensus 1095 d------p~LF~gTIreNL~ 1108 (1236)
+ ..++..++.+|+.
T Consensus 95 ~~~~~~~~~l~~~~v~~~i~ 114 (252)
T 4e22_A 95 SQNGQLQVILEGEDVSNEIR 114 (252)
T ss_dssp EETTEEEEEETTEECTTGGG
T ss_pred cCCCCceEEECCeehhHHHH
Confidence 5 4566778888764
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=6.6e-10 Score=132.18 Aligned_cols=54 Identities=17% Similarity=0.160 Sum_probs=50.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ 1081 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~ 1081 (1236)
.+|+|+||+|++ |++||+||||||||||+++|.|+++|++|+|.++|.++...+
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~ 71 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAGST 71 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCSCC
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEcccCc
Confidence 379999999999 999999999999999999999999999999999999987554
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=98.84 E-value=7.1e-09 Score=116.95 Aligned_cols=139 Identities=14% Similarity=0.138 Sum_probs=94.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
+.++++++.|+.. . ++++|+ +|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..-...
T Consensus 77 ~~~~~l~~~~~~~---~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~~~~~------- 142 (295)
T 1ls1_A 77 TVYEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAR------- 142 (295)
T ss_dssp HHHHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSCHHHH-------
T ss_pred HHHHHHHHHHCCC---C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcccHhHH-------
Confidence 4566777778421 1 678888 9999999999999999999999999999999999887765421100
Q ss_pred EEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCE
Q 040099 465 LVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRI 544 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~i 544 (1236)
+ ++....+.. |++-... +..-+..+-+|.+|+++...++++
T Consensus 143 --------------~------------ql~~~~~~~-----------~l~~~~~--~~~~~p~~l~~~~l~~~~~~~~D~ 183 (295)
T 1ls1_A 143 --------------E------------QLRLLGEKV-----------GVPVLEV--MDGESPESIRRRVEEKARLEARDL 183 (295)
T ss_dssp --------------H------------HHHHHHHHH-----------TCCEEEC--CTTCCHHHHHHHHHHHHHHHTCCE
T ss_pred --------------H------------HHHHhcccC-----------CeEEEEc--CCCCCHHHHHHHHHHHHHhCCCCE
Confidence 0 000011111 1211111 011234456899999998899999
Q ss_pred EEEeCc-CCCCCHHHHHHHHHHHHHHccCceEE
Q 040099 545 LLLDEA-TSALDSESGRMVQEALDRVMINRTTV 576 (1236)
Q Consensus 545 lilDE~-ts~lD~~~~~~i~~~l~~~~~~~t~i 576 (1236)
+|+||| ++++|......+.+..+....+.+++
T Consensus 184 viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~l 216 (295)
T 1ls1_A 184 ILVDTAGRLQIDEPLMGELARLKEVLGPDEVLL 216 (295)
T ss_dssp EEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEE
T ss_pred EEEeCCCCccccHHHHHHHHHHhhhcCCCEEEE
Confidence 999999 99999988777777666553333433
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.83 E-value=2.3e-10 Score=128.85 Aligned_cols=73 Identities=21% Similarity=0.277 Sum_probs=44.7
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE---CCeecCCCCHHHHhcceEEEccCCCCCc-----hhHHH
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI---DGVNLKEFQLKWIREKIGLVSQEPVLLS-----SSIRD 479 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~---~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-----~ti~~ 479 (1236)
+++.+|++++|+||||||||||+|.|.|...|..|+|.+ +|+++.... ...+..++|++|.|.+.. .|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 567899999999999999999999999999999999998 887765432 122223899999997653 478 9
Q ss_pred HHh
Q 040099 480 NIA 482 (1236)
Q Consensus 480 ni~ 482 (1236)
|+.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 983
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.83 E-value=1.9e-11 Score=142.39 Aligned_cols=165 Identities=13% Similarity=0.162 Sum_probs=109.7
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc------------ccCCCCcEEEECCeecccCC-hHHHhcce---EEEcCCCCC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR------------FYDPSSGHITLDGVEIQKLQ-VKWLRQQM---GVVSQEPVL 1098 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r------------~~~~~~G~I~idG~di~~i~-~~~lR~~i---~~V~Qdp~L 1098 (1236)
.+++|+++||||++|+|||||++.|.| ..+|+.|.|.++|..+..+. ...-++.+ ..+.+-|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 567899999999999999999999999 67899999999985432211 00111222 356677766
Q ss_pred Chh-hHHHHHH-----HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC--CEEEEecCCCCCCHHHH
Q 040099 1099 FSD-TIRANIA-----EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP--KILLLDEATSALDIESE 1170 (1236)
Q Consensus 1099 F~g-TIreNL~-----~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p--~ILlLDEaTSaLD~~te 1170 (1236)
..+ |..|++. ...+++. +...-+..+ ......+||+. +| +|+++||+++.+|+++-
T Consensus 96 ~~~~s~~e~L~~~fl~~ir~~d~-il~Vvd~~~---d~~i~~v~~~~------------dP~~di~ildeel~~~D~~~~ 159 (392)
T 1ni3_A 96 TKGASTGVGLGNAFLSHVRAVDA-IYQVVRAFD---DAEIIHVEGDV------------DPIRDLSIIVDELLIKDAEFV 159 (392)
T ss_dssp CCCCCSSSSSCHHHHHHHTTCSE-EEEEEECCC---TTCSSCCSSSS------------CHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCCcHHHHHHHHHHHHHHHHHH-HHHHHhccc---cceeeeecccc------------CcchhhhhchhhhHHHHHHHH
Confidence 543 3333331 0111111 100000111 12223355543 89 99999999999999999
Q ss_pred HHHHHHHHHH-cCC-CeEEEEecCchhhhh-cCEEE-EEeCC-EEEEecChh
Q 040099 1171 RVVQDALDQV-MVD-RTTLVVAHRLSTIKN-AHLIA-VVSQG-MIVEKGSHE 1217 (1236)
Q Consensus 1171 ~~I~~~L~~~-~~~-~TvI~IaHRl~ti~~-aD~I~-Vl~~G-~Ive~Gt~~ 1217 (1236)
+..++.+++. .++ .|+ ++|.+..+.. ||+|. +|++| +++..|+..
T Consensus 160 ~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~~ 209 (392)
T 1ni3_A 160 EKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDWS 209 (392)
T ss_dssp HHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCCC
T ss_pred HHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCCC
Confidence 9988888876 544 454 3999998865 99999 99999 888766543
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=98.81 E-value=1.7e-10 Score=130.92 Aligned_cols=70 Identities=19% Similarity=0.154 Sum_probs=52.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHh-cceEEEcCCCCCC------hhhHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLR-QQMGVVSQEPVLF------SDTIR 1104 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR-~~i~~V~Qdp~LF------~gTIr 1104 (1236)
++.+|++++|+||||||||||+++|. +.+|.+|+|.+ +|.++..... ..+ +.+++|+|+|-+. .-|+
T Consensus 161 ~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~-~~~~~~~g~v~d~pg~~~~~l~~~lt~- 237 (302)
T 2yv5_A 161 DYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR-LIPFGKGSFVGDTPGFSKVEATMFVKP- 237 (302)
T ss_dssp HHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE-EEEETTTEEEESSCCCSSCCGGGTSCG-
T ss_pred hhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE-EEEcCCCcEEEECcCcCcCcccccCCH-
Confidence 55679999999999999999999999 99999999999 9998876442 223 3699999999542 3477
Q ss_pred HHH
Q 040099 1105 ANI 1107 (1236)
Q Consensus 1105 eNL 1107 (1236)
||+
T Consensus 238 e~l 240 (302)
T 2yv5_A 238 REV 240 (302)
T ss_dssp GGG
T ss_pred HHH
Confidence 887
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=4.2e-10 Score=134.79 Aligned_cols=156 Identities=15% Similarity=0.224 Sum_probs=96.1
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhc--ccCCCCcEEEECCeecccCChHHHhc--ce-EEEcCCCCCChhhHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQR--FYDPSSGHITLDGVEIQKLQVKWLRQ--QM-GVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~~~G~I~idG~di~~i~~~~lR~--~i-~~V~Qdp~LF~gTIre 1105 (1236)
.+++++.+|..+.|+|.|||||||+++.|.. ++.++.|++.+.++|.+......+.. ++ +.|-+|+. -..+
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~lPhl~~~Vvtd~~----~a~~ 234 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMK----DAAN 234 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTTCTTBSSSCBCSHH----HHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhccCCcccceeecCHH----HHHH
Confidence 4788999999999999999999999999876 67777899998888887655544432 11 12223321 1112
Q ss_pred HHH----HHhhhchHHHhhh----hchhhhhcCCCCCCChhHHHHH----------HHHHHHccCCC-EEEEecCCCCCC
Q 040099 1106 NIA----EMANANGFISGLQ----EGYDTLVGERGVQLSGGQKQRV----------AIARAIVKEPK-ILLLDEATSALD 1166 (1236)
Q Consensus 1106 NL~----~~a~~~~~i~~lp----~Gldt~vge~G~~LSGGQrQRl----------aLARALlr~p~-ILlLDEaTSaLD 1166 (1236)
.|. ++-...+...... .+|+..+. ..+|+||+|+. ++|+++-..|. ++++||+++-+|
T Consensus 235 ~L~~~~~EmerR~~ll~~~Gv~~i~~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ivlvIDE~~~ll~ 311 (512)
T 2ius_A 235 ALRWCVNEMERRYKLMSALGVRNLAGYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMM 311 (512)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCEEEEEEETHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCccHHHHHHHHH---HHhhcCCcccccccccccchhccccccccCCcEEEEEeCHHHHHh
Confidence 221 1111111111110 12222221 13688887753 46777788898 899999999998
Q ss_pred HHHHHHHHHHHHHH---c--CCCeEEEEecCch
Q 040099 1167 IESERVVQDALDQV---M--VDRTTLVVAHRLS 1194 (1236)
Q Consensus 1167 ~~te~~I~~~L~~~---~--~~~TvI~IaHRl~ 1194 (1236)
... ..+.+.|.++ . .|.++|++|||++
T Consensus 312 ~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 312 TVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp HHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred hhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 432 3344444332 2 2679999999998
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=98.81 E-value=7.7e-12 Score=145.59 Aligned_cols=169 Identities=17% Similarity=0.149 Sum_probs=107.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHc------------CCCCCCcEEEECCeecCCCCH-HHHhcce---EEEccCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQR------------FYDPQAGEVLIDGVNLKEFQL-KWIREKI---GLVSQEPVL 472 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~------------~~~~~~G~i~~~g~~~~~~~~-~~~r~~i---~~v~Q~~~l 472 (1236)
++++|..++|||++|+|||||+|.|+| ..+|+.|.+.++|..+..+.. ..-++.+ .++.+.|-+
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~~~~~~~v~~~i~lvD~pGl 95 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEAYKPKSRVPAFLTVFDIAGL 95 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHHHCCSEEECEEEEEECTGGG
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhhcccccccCcceEEEecccc
Confidence 557899999999999999999999999 667999999998754321100 0011222 366677665
Q ss_pred Cch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC--CEEEEeC
Q 040099 473 LSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP--RILLLDE 549 (1236)
Q Consensus 473 ~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p--~ililDE 549 (1236)
..+ |..|++ . .......+.+.+--++-.. .+ ......+||+. +| +++++||
T Consensus 96 ~~~~s~~e~L-------~-~~fl~~ir~~d~il~Vvd~---~~---d~~i~~v~~~~------------dP~~di~ilde 149 (392)
T 1ni3_A 96 TKGASTGVGL-------G-NAFLSHVRAVDAIYQVVRA---FD---DAEIIHVEGDV------------DPIRDLSIIVD 149 (392)
T ss_dssp CCCCCSSSSS-------C-HHHHHHHTTCSEEEEEEEC---CC---TTCSSCCSSSS------------CHHHHHHHHHH
T ss_pred ccCCcHHHHH-------H-HHHHHHHHHHHHHHHHHhc---cc---cceeeeecccc------------Ccchhhhhchh
Confidence 543 222211 1 1122222222110000000 00 12223356542 89 9999999
Q ss_pred cCCCCCHHHHHHHHHHHHHH-cc-CceEEEEecCchhHhh-cCeEE-EEECC-EEEEEeCc
Q 040099 550 ATSALDSESGRMVQEALDRV-MI-NRTTVIVSHRLSLIRN-ANIIA-VIQQG-KIVEKGTH 605 (1236)
Q Consensus 550 ~ts~lD~~~~~~i~~~l~~~-~~-~~t~i~itH~~~~~~~-ad~i~-vl~~G-~i~~~g~~ 605 (1236)
|++.+|+......++.+.+. .+ |+|+ ++|.+..+.. ||++. +|++| +++..|+.
T Consensus 150 el~~~D~~~~~k~~~~l~~~~~~~g~ti--~sh~~~~~~~l~~~i~~~L~~G~~~~~~~~~ 208 (392)
T 1ni3_A 150 ELLIKDAEFVEKHLEGLRKITSRGANTL--EMKAKKEEQAIIEKVYQYLTETKQPIRKGDW 208 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCSSCSS--SHHHHHHHHHHHHHHHHHHHTTCSCGGGSCC
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHHHHhccCCceeecCCC
Confidence 99999999998888888877 54 4554 3999988765 99999 99999 87655543
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.78 E-value=3.2e-10 Score=125.37 Aligned_cols=98 Identities=16% Similarity=0.209 Sum_probs=74.5
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEE--------ECCeecC-CCCHHHHhcceEEEccC
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVL--------IDGVNLK-EFQLKWIREKIGLVSQE 469 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~-~~~~~~~r~~i~~v~Q~ 469 (1236)
++++.+ ++|++++|+|||||||||++++|+ |++.|++|.++ .+|.++. ......+++++++++|+
T Consensus 19 ~~~~m~---~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 95 (252)
T 4e22_A 19 ERPHMT---AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEALVPLAAHLDVRFVS 95 (252)
T ss_dssp ----CT---TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTTHHHHHHTCCEEEEE
T ss_pred hhhhcC---CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHHHHHHHHcCCEEEec
Confidence 444443 789999999999999999999999 99999999999 9999984 45677899999999964
Q ss_pred ------CCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhC
Q 040099 470 ------PVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNL 509 (1236)
Q Consensus 470 ------~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l 509 (1236)
.+++..++.+||. .+++..++.....++.+...
T Consensus 96 ~~~~~~~~l~~~~v~~~i~-------~~~v~~~~s~~~~~~~vr~~ 134 (252)
T 4e22_A 96 QNGQLQVILEGEDVSNEIR-------TETVGNTASQAAAFPRVREA 134 (252)
T ss_dssp ETTEEEEEETTEECTTGGG-------SHHHHHHHHHHTTSHHHHHH
T ss_pred CCCCceEEECCeehhHHHH-------HHHHHHHHHHhcccHHHHHH
Confidence 3466668888865 24555566555555555443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.76 E-value=1.7e-11 Score=137.82 Aligned_cols=132 Identities=18% Similarity=0.270 Sum_probs=92.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++++.+.|. ...+++++++++++| ++|+||||||||||+++|++... .|.|.++|.++.+......++++++
T Consensus 51 ~l~~l~~~~~---~~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHH---CHHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 4556666663 235899999999999 99999999999999999999885 8999999887754444445567888
Q ss_pred EccCCC-CCc-hhHHHHH-hcCCCCCC-----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 466 VSQEPV-LLS-SSIRDNI-AYGKTHAT-----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 466 v~Q~~~-l~~-~ti~~ni-~~g~~~~~-----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|++. .+. -++.||| .++..... .++..+.+ ..++ ..|||||+||+.+++|
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~lsgg~~~~~~i~~a 183 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVMA 183 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHH-----HHHH---------------HHHTTCCTTCCEEEEE
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEEE
Confidence 888753 332 3666777 33321110 11111111 1122 1489999999999999
Q ss_pred hcCCCCE
Q 040099 538 MIKDPRI 544 (1236)
Q Consensus 538 l~~~p~i 544 (1236)
+..+|++
T Consensus 184 ~t~~p~~ 190 (278)
T 1iy2_A 184 ATNRPDI 190 (278)
T ss_dssp EESCTTS
T ss_pred ecCCchh
Confidence 9999976
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.75 E-value=1.1e-09 Score=116.82 Aligned_cols=73 Identities=10% Similarity=0.094 Sum_probs=56.6
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHHhc
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAY 483 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~ 483 (1236)
|+++++|++++|+||||||||||+++|+|+++ .+.+++.++...+....+..++|++|++.+|.. ++.+|+..
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRPGDQEGVDYFFIDETRFQAMVKEGAFLE 74 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCTTCCBTTTBEECCHHHHHHHHHHTCEEE
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCchhHhcCceEEeccHHHHHHHHhcCcEEe
Confidence 57788999999999999999999999999973 688888877665544457789999999987765 66666543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=1.7e-11 Score=141.49 Aligned_cols=168 Identities=16% Similarity=0.142 Sum_probs=103.7
Q ss_pred EEeEEEECCCCCCCccccceeEEecCC-------cEEEEEcCCCCcHHHHHHHHHcCC----CCCCcEEEECCeecCCCC
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNG-------TIAALVGTSGSGKSTVISLIQRFY----DPQAGEVLIDGVNLKEFQ 455 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g-------~~~~ivG~sGsGKSTl~~ll~~~~----~~~~G~i~~~g~~~~~~~ 455 (1236)
.++++..|. ...+++++++.+++| +.++|+||+|+|||||+++|++.+ .|++|.+..++.++..+.
T Consensus 21 ~~~l~~~~g---~~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIG---QENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCS---CHHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccC---cHHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 344555553 235899999999877 899999999999999999999998 677888777666553221
Q ss_pred HHHHhcceEEEccCCCCCchhHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCC-CccccccCCCCCCChHH
Q 040099 456 LKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQ-GLDTNVGEHGIQLSGGQ 528 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~-g~~t~~g~~g~~LSgGq 528 (1236)
....+..|.+++|...++. ++.|++....... + ..+. .+. +.. .+|. ++.. ...+...||+|+
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~---~~~--i~~---~l~~~~li~-at~~~~~Ls~~l 167 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPS---AKS--IRI---DIQPFTLVG-ATTRSGLLSSPL 167 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC-----------------------CCCEEEE-EESCGGGSCHHH
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcc---ccc--ccc---cCCCeEEEE-ecCCcccCCHHH
Confidence 1112457999999887765 7888774321100 0 0000 000 001 1111 2211 223345799999
Q ss_pred HHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHh
Q 040099 529 KQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIR 586 (1236)
Q Consensus 529 kqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~ 586 (1236)
|||++++ .+||+.+...+.+.|++..+.. -++|..+.+.
T Consensus 168 ~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~---~~~~~~~~~~ 206 (334)
T 1in4_A 168 RSRFGII----------------LELDFYTVKELKEIIKRAASLM---DVEIEDAAAE 206 (334)
T ss_dssp HTTCSEE----------------EECCCCCHHHHHHHHHHHHHHT---TCCBCHHHHH
T ss_pred HHhcCce----------------eeCCCCCHHHHHHHHHHHHHHc---CCCcCHHHHH
Confidence 9998654 6788877777877777654211 1356655543
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=98.74 E-value=1.1e-10 Score=134.66 Aligned_cols=148 Identities=15% Similarity=0.173 Sum_probs=100.9
Q ss_pred EeEEEEECCCCCCcccccceeEEecCC-------CEEEEEcCCCCChHHHHHHHhccc----CCCCcEEEECCeecccCC
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPG-------KTIALVGESGSGKSTVISLLQRFY----DPSSGHITLDGVEIQKLQ 1081 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~G-------e~vaIVG~SGSGKSTL~~lL~r~~----~~~~G~I~idG~di~~i~ 1081 (1236)
.++++..|.+ ..+++++++.|++| +.++|+||+|+|||||+++|.+.. .+.+|.+..++.|+..+.
T Consensus 21 ~~~l~~~~g~---~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~~~ 97 (334)
T 1in4_A 21 PKSLDEFIGQ---ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAAIL 97 (334)
T ss_dssp CSSGGGCCSC---HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHHHH
T ss_pred CccHHHccCc---HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHHHH
Confidence 3345555543 24899999999887 889999999999999999999998 677888888777765432
Q ss_pred hHHHhcceEEEcCCCCCChhhHHHHHHHHhhhch--H----------HH-hhhh-chhhhhcCCCCCCChhHHHHHHHHH
Q 040099 1082 VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANG--F----------IS-GLQE-GYDTLVGERGVQLSGGQKQRVAIAR 1147 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~--~----------i~-~lp~-Gldt~vge~G~~LSGGQrQRlaLAR 1147 (1236)
....+..|.+|+|.+.++. ++.|++........ . +. .+|. ++.. .......||+|+|||++++
T Consensus 98 ~~~~~~~v~~iDE~~~l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~-at~~~~~Ls~~l~sR~~l~- 174 (334)
T 1in4_A 98 TSLERGDVLFIDEIHRLNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG-ATTRSGLLSSPLRSRFGII- 174 (334)
T ss_dssp HHCCTTCEEEEETGGGCCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE-EESCGGGSCHHHHTTCSEE-
T ss_pred HHccCCCEEEEcchhhcCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE-ecCCcccCCHHHHHhcCce-
Confidence 2222567999999888776 88888753221110 0 00 0110 1110 1123347999999998665
Q ss_pred HHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1148 AIVKEPKILLLDEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1148 ALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
.+||+.+...+.+.|++..
T Consensus 175 ---------------~~Ld~~~~~~l~~iL~~~~ 193 (334)
T 1in4_A 175 ---------------LELDFYTVKELKEIIKRAA 193 (334)
T ss_dssp ---------------EECCCCCHHHHHHHHHHHH
T ss_pred ---------------eeCCCCCHHHHHHHHHHHH
Confidence 7788888888888877654
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=98.73 E-value=8.4e-10 Score=132.19 Aligned_cols=158 Identities=18% Similarity=0.238 Sum_probs=94.2
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc---h---h
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQR--FYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS---S---S 476 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~---~---t 476 (1236)
.+++++.++..+.|.|+|||||||+++.|.. ++.++.|++.+.+.|.+......+.. -|+++. . -
T Consensus 159 pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~~~~-------lPhl~~~Vvtd~~~ 231 (512)
T 2ius_A 159 PVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEG-------IPHLLTEVVTDMKD 231 (512)
T ss_dssp EEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGGGTT-------CTTBSSSCBCSHHH
T ss_pred EEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhhhcc-------CCcccceeecCHHH
Confidence 4788899999999999999999999999876 67777788888777766543333221 122211 0 1
Q ss_pred HHHHHhcCCCCCCHHHHH---HHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH----------HHHHHhcCCCC
Q 040099 477 IRDNIAYGKTHATKEEIQ---AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV----------AIARAMIKDPR 543 (1236)
Q Consensus 477 i~~ni~~g~~~~~~~~~~---~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi----------aiARal~~~p~ 543 (1236)
+.+.+.. ..+|++ +.++..++.++- +|+..+. ..+||||+||. ++|+++...|.
T Consensus 232 a~~~L~~-----~~~EmerR~~ll~~~Gv~~i~-----~yn~~~~---~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP~ 298 (512)
T 2ius_A 232 AANALRW-----CVNEMERRYKLMSALGVRNLA-----GYNEKIA---EADRMMRPIPDPYWKPGDSMDAQHPVLKKEPY 298 (512)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHTTCSSHH-----HHHHHHH---HHHHTTCCCBCTTC---------CCBCCCCCE
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHcCCccHH-----HHHHHHH---HHhhcCCcccccccccccchhccccccccCCc
Confidence 1112111 011111 122222221110 1111111 14788888753 46788888998
Q ss_pred -EEEEeCcCCCCCHHHHHHHHHHHHHH----c-cCceEEEEecCch
Q 040099 544 -ILLLDEATSALDSESGRMVQEALDRV----M-INRTTVIVSHRLS 583 (1236)
Q Consensus 544 -ililDE~ts~lD~~~~~~i~~~l~~~----~-~~~t~i~itH~~~ 583 (1236)
++++||+++.+|... ..+.+.+.++ + .|.++|++|||++
T Consensus 299 ivlvIDE~~~ll~~~~-~~~~~~l~~Lar~gRa~GI~LIlaTQrp~ 343 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-KKVEELIARLAQKARAAGIHLVLATQRPS 343 (512)
T ss_dssp EEEEEETHHHHHHHHH-HHHHHHHHHHHHHCGGGTEEEEEEESCCC
T ss_pred EEEEEeCHHHHHhhhh-HHHHHHHHHHHHHhhhCCcEEEEEecCCc
Confidence 899999999988432 3444444433 2 2679999999988
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=2.5e-11 Score=134.54 Aligned_cols=138 Identities=20% Similarity=0.268 Sum_probs=94.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
.+++++.+.|. ...+++++++++++| ++|+||||||||||++.|++... .|.+.++|.++.+......+++++
T Consensus 26 ~~l~~l~~~~~---~~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~ 98 (254)
T 1ixz_A 26 EELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVR 98 (254)
T ss_dssp HHHHHHHHHHH---CHHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHH
T ss_pred HHHHHHHHHHH---CHHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHH
Confidence 35667777674 235899999999999 99999999999999999999875 899999988765444444456678
Q ss_pred EEccCCC-CCc-hhHHHHH-hcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 465 LVSQEPV-LLS-SSIRDNI-AYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 465 ~v~Q~~~-l~~-~ti~~ni-~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
+++|+.. .+. -++.||| .++.... ..++..+.. ..++ ..|||||+||+.+++
T Consensus 99 ~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~-----~~ll---------------~~l~g~~~~~~~i~~ 158 (254)
T 1ixz_A 99 DLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTL-----NQLL---------------VEMDGFEKDTAIVVM 158 (254)
T ss_dssp HHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHH-----HHHH---------------HHHHTCCTTCCEEEE
T ss_pred HHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHH-----HHHH---------------HHHhCCCCCCCEEEE
Confidence 8888753 332 3566666 3332111 011111111 1122 147899999999999
Q ss_pred HhcCCCCEEEEeCcC
Q 040099 537 AMIKDPRILLLDEAT 551 (1236)
Q Consensus 537 al~~~p~ililDE~t 551 (1236)
|+..+|++ ||++.
T Consensus 159 a~t~~p~~--ld~~l 171 (254)
T 1ixz_A 159 AATNRPDI--LDPAL 171 (254)
T ss_dssp EEESCGGG--SCGGG
T ss_pred EccCCchh--CCHHH
Confidence 99999986 56554
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.71 E-value=2.8e-08 Score=114.66 Aligned_cols=151 Identities=20% Similarity=0.306 Sum_probs=86.7
Q ss_pred ccccceeE--EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 401 QILNGFCL--LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 401 ~~l~~i~~--~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
+-|+.+-= -+++|+++.|.||+|||||||+..++.......|.+ +++... ..+. ...+++|+.+|+..
T Consensus 47 ~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~------ 117 (349)
T 2zr9_A 47 ISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL------ 117 (349)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE------
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE------
Confidence 34554322 578999999999999999999887776554444433 333211 0010 01111221111100
Q ss_pred HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCC--CCEEEEeCcCCCC-
Q 040099 478 RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKD--PRILLLDEATSAL- 554 (1236)
Q Consensus 478 ~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~--p~ililDE~ts~l- 554 (1236)
+-. ..+. .|-+.++++++++ |+++|+||+++.+
T Consensus 118 ---------------------------------------i~~---~~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~ 153 (349)
T 2zr9_A 118 ---------------------------------------VSQ---PDTG--EQALEIADMLVRSGALDIIVIDSVAALVP 153 (349)
T ss_dssp ---------------------------------------EEC---CSSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCC
T ss_pred ---------------------------------------Eec---CCCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcc
Confidence 000 0122 2345678888765 9999999999998
Q ss_pred ---------CH---HHHHHHHHHHHHH----c-cCceEEEEecCch----------------hHhh-cCeEEEEECCEEE
Q 040099 555 ---------DS---ESGRMVQEALDRV----M-INRTTVIVSHRLS----------------LIRN-ANIIAVIQQGKIV 600 (1236)
Q Consensus 555 ---------D~---~~~~~i~~~l~~~----~-~~~t~i~itH~~~----------------~~~~-ad~i~vl~~G~i~ 600 (1236)
|+ ...+.+.+.++++ . .+.|+|+++|-.. .+++ ||.++.++.+++.
T Consensus 154 ~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~ 233 (349)
T 2zr9_A 154 RAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETL 233 (349)
T ss_dssp HHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEE
T ss_pred hhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeee
Confidence 32 1222344444443 1 3789999999543 2444 9999999887766
Q ss_pred EEeC
Q 040099 601 EKGT 604 (1236)
Q Consensus 601 ~~g~ 604 (1236)
..|+
T Consensus 234 k~g~ 237 (349)
T 2zr9_A 234 KDGT 237 (349)
T ss_dssp CSSS
T ss_pred ecCc
Confidence 5443
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=98.70 E-value=3.3e-11 Score=135.43 Aligned_cols=138 Identities=19% Similarity=0.252 Sum_probs=95.7
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++++...|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......+++++.
T Consensus 51 ~l~~l~~~~~~---~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 123 (278)
T 1iy2_A 51 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 123 (278)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhhHHHHHHHH
Confidence 34556666642 24899999999999 99999999999999999999985 7999999988866555556677888
Q ss_pred EcCCCC-CCh-hhHHHHHHHHhhhchH-H----HhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1092 VSQEPV-LFS-DTIRANIAEMANANGF-I----SGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1092 V~Qdp~-LF~-gTIreNL~~~a~~~~~-i----~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
++|++. .+. -++.||++........ . ....+-++..+ ..|||||+||..+++|+..+|++ ||++.
T Consensus 124 ~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll----~~lsgg~~~~~~i~~a~t~~p~~--ld~~l 195 (278)
T 1iy2_A 124 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----VEMDGFEKDTAIVVMAATNRPDI--LDPAL 195 (278)
T ss_dssp HHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHHH----HHHTTCCTTCCEEEEEEESCTTS--SCHHH
T ss_pred HHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHHH----HHHhCCCCCCCEEEEEecCCchh--CCHhH
Confidence 888753 232 3556666433211000 0 00001112222 24899999999999999999987 67764
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.69 E-value=1.5e-09 Score=114.54 Aligned_cols=134 Identities=21% Similarity=0.268 Sum_probs=77.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC-----------CCcEEEECCeeccc--CChHHHhcceEEEcC---CC--C--CCh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDP-----------SSGHITLDGVEIQK--LQVKWLRQQMGVVSQ---EP--V--LFS 1100 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~-----------~~G~I~idG~di~~--i~~~~lR~~i~~V~Q---dp--~--LF~ 1100 (1236)
+++|+|++|||||||++.|.+...+ ..|+|.++|.++.- ++....++..++++| +. . .|+
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 7999999999999999999998754 57999999976531 222122222333333 21 1 222
Q ss_pred hh---HHHHHHHHhhhchHHHhh-hhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040099 1101 DT---IRANIAEMANANGFISGL-QEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175 (1236)
Q Consensus 1101 gT---IreNL~~~a~~~~~i~~l-p~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~ 1175 (1236)
.+ -.+|+..... .+... +.... -.++.. ..|..-..+...+||++.++|+++++| ||++|.+....+.+
T Consensus 111 ~~~~~s~~~~~~~~~---~~~~~~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~ 184 (191)
T 1oix_A 111 IAKHLTYENVERWLK---ELRDHADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQ 184 (191)
T ss_dssp TTCHHHHHTHHHHHH---HHHHHSCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHHH---HHHHhcCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHH
Confidence 22 1233321110 01100 00000 001111 011111123467899999999999999 99999999999988
Q ss_pred HHHHH
Q 040099 1176 ALDQV 1180 (1236)
Q Consensus 1176 ~L~~~ 1180 (1236)
.|.+.
T Consensus 185 ~l~~~ 189 (191)
T 1oix_A 185 TILTE 189 (191)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 88653
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=98.68 E-value=4.2e-08 Score=113.17 Aligned_cols=143 Identities=22% Similarity=0.321 Sum_probs=86.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~ 1113 (1236)
-+++|+.+.|.||+|||||||+..+..-.....|. +++|... ..+. ...+++++-+|+..
T Consensus 57 Gl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~--~~~~-~~a~~lG~~~~~l~---------------- 117 (349)
T 2zr9_A 57 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEH--ALDP-EYAKKLGVDTDSLL---------------- 117 (349)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCH-HHHHHTTCCGGGCE----------------
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC--CcCH-HHHHHcCCCHHHeE----------------
Confidence 68899999999999999999987776554333343 3444321 1111 11122222221111
Q ss_pred chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC--CCEEEEecCCCCC----------CH---HHHHHHHHHHH
Q 040099 1114 NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE--PKILLLDEATSAL----------DI---ESERVVQDALD 1178 (1236)
Q Consensus 1114 ~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~--p~ILlLDEaTSaL----------D~---~te~~I~~~L~ 1178 (1236)
+-.. .+. .|.+.++++++++ |+++|+||+|+-+ |+ ...+.+.+.++
T Consensus 118 --------------i~~~---~~~--e~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~ 178 (349)
T 2zr9_A 118 --------------VSQP---DTG--EQALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALR 178 (349)
T ss_dssp --------------EECC---SSH--HHHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHH
T ss_pred --------------EecC---CCH--HHHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHH
Confidence 0000 122 3456788988865 9999999999998 32 12223444444
Q ss_pred HH-----cCCCeEEEEecCch----------------hhh-hcCEEEEEeCCEEEEecC
Q 040099 1179 QV-----MVDRTTLVVAHRLS----------------TIK-NAHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1179 ~~-----~~~~TvI~IaHRl~----------------ti~-~aD~I~Vl~~G~Ive~Gt 1215 (1236)
++ ..++|+|+++|-.. .++ .||.++.+..+++...|+
T Consensus 179 ~L~~~a~~~~~tVI~inh~~~~~~~~~~~p~~~~gg~~l~~~ad~~l~lrr~~~~k~g~ 237 (349)
T 2zr9_A 179 KMTGALNNSGTTAIFINELREKIGVMFGSPETTTGGKALKFYASVRLDVRRIETLKDGT 237 (349)
T ss_dssp HHHHHHHHHTCEEEEEEECC-----------CCSSHHHHHHHCSEEEEEEEEEEECSSS
T ss_pred HHHHHHHHhCCEEEEEeccccccCcccCCCcccCCchHhhhccceEEEEEEeeeeecCc
Confidence 43 13899999999543 243 489999998877665554
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.67 E-value=3.6e-09 Score=116.09 Aligned_cols=168 Identities=14% Similarity=0.136 Sum_probs=88.6
Q ss_pred Cccccce-eEEecCCcEEEEEcCCCCcHHHHHH-HHHcCCCCCCcEEEECCeecCCCCHHHHh---cceEEEccCCCCCc
Q 040099 400 EQILNGF-CLLIPNGTIAALVGTSGSGKSTVIS-LIQRFYDPQAGEVLIDGVNLKEFQLKWIR---EKIGLVSQEPVLLS 474 (1236)
Q Consensus 400 ~~~l~~i-~~~i~~g~~~~ivG~sGsGKSTl~~-ll~~~~~~~~G~i~~~g~~~~~~~~~~~r---~~i~~v~Q~~~l~~ 474 (1236)
.+.|+++ .--+++|++++|.||+|||||||+. ++....++..+.+++++.. +...++ .++++.+|+...
T Consensus 9 ~~~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~-- 82 (247)
T 2dr3_A 9 IPGVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE-- 82 (247)
T ss_dssp CTTHHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH--
T ss_pred chhHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh--
Confidence 3467776 6679999999999999999999965 5455554444555555432 222222 234444432100
Q ss_pred hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCC
Q 040099 475 SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATS 552 (1236)
Q Consensus 475 ~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts 552 (1236)
.+|+.+-... . ..+..++. .+..+-+. +....+....++.++ .+|+++++|++++
T Consensus 83 ---~~~l~~~~~~--~-------------~~~~~~~~-~~~~~~~~----~~~~~~~~~~i~~~~~~~~~~~vviD~~~~ 139 (247)
T 2dr3_A 83 ---KGMFAMVDAF--T-------------AGIGKSKE-YEKYIVHD----LTDIREFIEVLRQAIRDINAKRVVVDSVTT 139 (247)
T ss_dssp ---HTSEEEEECS--T-------------TTTCC--C-CCSCBCSC----CSSHHHHHHHHHHHHHHHTCCEEEEETSGG
T ss_pred ---CCcEEEEecc--h-------------hhcccccc-cccccccC----ccCHHHHHHHHHHHHHHhCCCEEEECCchH
Confidence 0011110000 0 00000000 00000011 112333334444444 4799999999999
Q ss_pred CC--CHHHHHHHHHHHHHHc--cCceEEEEecCchh--------H-hhcCeEEEEEC
Q 040099 553 AL--DSESGRMVQEALDRVM--INRTTVIVSHRLSL--------I-RNANIIAVIQQ 596 (1236)
Q Consensus 553 ~l--D~~~~~~i~~~l~~~~--~~~t~i~itH~~~~--------~-~~ad~i~vl~~ 596 (1236)
-+ |+.........+.++. .|.|+|+++|.... + ..||.|+.|+.
T Consensus 140 l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 140 LYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp GTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 88 5533344444444432 47899999997654 3 44899999974
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.67 E-value=2.7e-09 Score=133.77 Aligned_cols=135 Identities=18% Similarity=0.187 Sum_probs=99.8
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHH
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEM 1110 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~ 1110 (1236)
|+++++|++++|+|++|+|||||++.|.+...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||...
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 467889999999999999999999999987765 68998 789999999999999999999999988877665554211
Q ss_pred hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe
Q 040099 1111 ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVA 1190 (1236)
Q Consensus 1111 a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia 1190 (1236)
.+..+ ++ . . ..+-.-..+..++++| ||.++|..++..+..+.+ .+.++|++.
T Consensus 82 pG~~~-------------------f~-~--~--~~~~l~~ad~~ilVvD-~~~g~~~qt~~~~~~~~~---~~ip~ilv~ 133 (665)
T 2dy1_A 82 PGYGD-------------------FV-G--E--IRGALEAADAALVAVS-AEAGVQVGTERAWTVAER---LGLPRMVVV 133 (665)
T ss_dssp CCSGG-------------------GH-H--H--HHHHHHHCSEEEEEEE-TTTCSCHHHHHHHHHHHH---TTCCEEEEE
T ss_pred CCccc-------------------hH-H--H--HHHHHhhcCcEEEEEc-CCcccchhHHHHHHHHHH---ccCCEEEEe
Confidence 11111 11 0 1 1111124577899999 999999999866655432 377899999
Q ss_pred cCchhh
Q 040099 1191 HRLSTI 1196 (1236)
Q Consensus 1191 HRl~ti 1196 (1236)
|+++..
T Consensus 134 NKiD~~ 139 (665)
T 2dy1_A 134 TKLDKG 139 (665)
T ss_dssp ECGGGC
T ss_pred cCCchh
Confidence 998853
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=98.64 E-value=2.9e-10 Score=120.02 Aligned_cols=134 Identities=20% Similarity=0.238 Sum_probs=75.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC-----------CCcEEEECCeecCC--CCHHHHhcceEEEccC---C--CC--Cc
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDP-----------QAGEVLIDGVNLKE--FQLKWIREKIGLVSQE---P--VL--LS 474 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~-----------~~G~i~~~g~~~~~--~~~~~~r~~i~~v~Q~---~--~l--~~ 474 (1236)
+++|+|++|||||||++.+.|...| +.|+|.++|.++.- ++....++..++++|. . .+ ++
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 110 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGLERYRAITSAYYRGAVGALLVYD 110 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCCSCCCCCSEEEEEEEEEETTEEEEEEEEEECSCCSSSCCCHHHHTTCCEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceEEEEEEEEECCEEEEEEEEECCCCcchhhhhHHHhhcCCEEEEEEE
Confidence 6899999999999999999998765 57899999976531 1111111222333321 1 01 11
Q ss_pred hh---HHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 475 SS---IRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 475 ~t---i~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
.+ -.+|+. ..+.+..+. .+.... -.++.+ ..|..-..+...+||+++.+|+++++|
T Consensus 111 ~~~~~s~~~~~--------~~~~~~~~~---------~~~~~~i~~v~nK-~Dl~~~~~~~~~~a~~l~~~~~~~~ld-- 170 (191)
T 1oix_A 111 IAKHLTYENVE--------RWLKELRDH---------ADSNIVIMLVGNK-SDLRHLRAVPTDEARAFAEKNGLSFIE-- 170 (191)
T ss_dssp TTCHHHHHTHH--------HHHHHHHHH---------SCTTCEEEEEEEC-GGGGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHHHHHHHH--------HHHHHHHHh---------cCCCCcEEEEEEC-cccccccccCHHHHHHHHHHcCCEEEE--
Confidence 11 011110 001010000 000000 111211 112222234578899999999999999
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 040099 551 TSALDSESGRMVQEALDR 568 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~ 568 (1236)
||++|......+++.|.+
T Consensus 171 ~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 171 TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CCTTTCTTHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHH
Confidence 999999999888888754
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.63 E-value=9.1e-10 Score=118.71 Aligned_cols=75 Identities=13% Similarity=0.150 Sum_probs=52.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC--------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-------- 455 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------- 455 (1236)
.|+++|++..|. . ++++++ ++++|+||||||||||+++|+|++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~----~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA----R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE----E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC----C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 478888865552 1 566666 899999999999999999999999999999999999884332
Q ss_pred HHHHhcceEEEccC
Q 040099 456 LKWIREKIGLVSQE 469 (1236)
Q Consensus 456 ~~~~r~~i~~v~Q~ 469 (1236)
....+.+++||+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 12246789999984
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.63 E-value=7.1e-09 Score=117.56 Aligned_cols=66 Identities=18% Similarity=0.164 Sum_probs=45.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHhcceEEEcCCCCCC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLF 1099 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF 1099 (1236)
|++.+|+.++|+||||||||||+++|.|+..|++|+|.+ +|.++.........+++++|+|+|.+.
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~~~~~~~~g~v~q~p~~~ 232 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQLLKFDFGGYVVDTPGFA 232 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCCEEECTTSCEEESSCSST
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeEEEEcCCCCEEEECcCCC
Confidence 466789999999999999999999999999999999999 999987654221124699999999653
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.63 E-value=2e-08 Score=110.13 Aligned_cols=162 Identities=17% Similarity=0.156 Sum_probs=90.4
Q ss_pred cccce-eEEecCCCEEEEEcCCCCChHHHHH-HHhcccCCCCcEEEECCeecccCChHHHhc---ceEEEcCCCCCChhh
Q 040099 1028 VFRDL-CLTIPPGKTIALVGESGSGKSTVIS-LLQRFYDPSSGHITLDGVEIQKLQVKWLRQ---QMGVVSQEPVLFSDT 1102 (1236)
Q Consensus 1028 vL~~i-s~~I~~Ge~vaIVG~SGSGKSTL~~-lL~r~~~~~~G~I~idG~di~~i~~~~lR~---~i~~V~Qdp~LF~gT 1102 (1236)
.|+.+ .--+++|+.++|+||+|||||||+. ++....+...+.+++++.. +...+++ ++++.+|+...
T Consensus 11 ~LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~----~~~~~~~~~~~~g~~~~~~~~---- 82 (247)
T 2dr3_A 11 GVDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEE----HPVQVRQNMAQFGWDVKPYEE---- 82 (247)
T ss_dssp THHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSS----CHHHHHHHHHTTTCCCHHHHH----
T ss_pred hHHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccC----CHHHHHHHHHHcCCCHHHHhh----
Confidence 46666 6689999999999999999999954 5555555444556665432 2333332 34544443210
Q ss_pred HHHHHHHHhhhch----HHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCC--CHHHHHHHH
Q 040099 1103 IRANIAEMANANG----FISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSAL--DIESERVVQ 1174 (1236)
Q Consensus 1103 IreNL~~~a~~~~----~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaL--D~~te~~I~ 1174 (1236)
..|+ ...+ .+..++. .+..+.+ -+....+.+..++.++ .+|+++++|++|+-+ |+...+...
T Consensus 83 -~~~l----~~~~~~~~~~~~~~~-~~~~~~~----~~~~~~~~~~~i~~~~~~~~~~~vviD~~~~l~~~~~~~~~~~l 152 (247)
T 2dr3_A 83 -KGMF----AMVDAFTAGIGKSKE-YEKYIVH----DLTDIREFIEVLRQAIRDINAKRVVVDSVTTLYINKPAMARSII 152 (247)
T ss_dssp -HTSE----EEEECSTTTTCC--C-CCSCBCS----CCSSHHHHHHHHHHHHHHHTCCEEEEETSGGGTTTCGGGHHHHH
T ss_pred -CCcE----EEEecchhhcccccc-ccccccc----CccCHHHHHHHHHHHHHHhCCCEEEECCchHhhcCCHHHHHHHH
Confidence 0011 0000 0000000 0000001 1123445555555555 479999999999988 543333333
Q ss_pred HHHHHHc--CCCeEEEEecCchh--------h-hhcCEEEEEeC
Q 040099 1175 DALDQVM--VDRTTLVVAHRLST--------I-KNAHLIAVVSQ 1207 (1236)
Q Consensus 1175 ~~L~~~~--~~~TvI~IaHRl~t--------i-~~aD~I~Vl~~ 1207 (1236)
..+.+.. .++|+|+++|.... + ..||.|+.|+.
T Consensus 153 ~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 153 LQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred HHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 3443332 47899999998765 3 45899999964
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.61 E-value=1.3e-09 Score=135.82 Aligned_cols=157 Identities=16% Similarity=0.174 Sum_probs=101.2
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC-cEEEECCeecCCCCHHHHhcceEEEccCC--------
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQA-GEVLIDGVNLKEFQLKWIREKIGLVSQEP-------- 470 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~-G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~-------- 470 (1236)
..+++++++.+++|+.++|+||+|+|||||++.|.+..++.. |.+.+++.+.... ...++++||..
T Consensus 47 ~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~~~~~e~~ 121 (604)
T 3k1j_A 47 EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQGRRIVEKY 121 (604)
T ss_dssp HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHHHHHHHHH
T ss_pred hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchHHHHHHHH
Confidence 468999999999999999999999999999999999999888 7888887665432 34688887754
Q ss_pred --------------CCCc-hhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHH
Q 040099 471 --------------VLLS-SSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIA 535 (1236)
Q Consensus 471 --------------~l~~-~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiA 535 (1236)
+.+. .++.+|+..++.......+... ......+.+..+ +.. ......+|+|++|++..+
T Consensus 122 ~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~-~~~~~~~L~G~~----~~~-~~~~g~~~~g~~~~i~~g 195 (604)
T 3k1j_A 122 REKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDA-TGAHAGALLGDV----RHD-PFQSGGLGTPAHERVEPG 195 (604)
T ss_dssp HHHHHHHTCC-----------CCCEEEECCTTCSSCCEEEC-TTCCHHHHHCEE----CCC-CC----CCCCGGGGEECC
T ss_pred HHhhccchhhhhhcccccccccccceeeccccCCCCCEEEc-CCCCHHhcCceE----Eec-hhhcCCccccccccccCc
Confidence 1111 1333333322110000000000 000011111111 000 112235999999999999
Q ss_pred HHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHH
Q 040099 536 RAMIKDPRILLLDEATSALDSESGRMVQEALDR 568 (1236)
Q Consensus 536 Ral~~~p~ililDE~ts~lD~~~~~~i~~~l~~ 568 (1236)
+....++.+|+|||.-. |++.....+.+.|++
T Consensus 196 ~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 196 MIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp HHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred eeeecCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 99999999999999988 798888877777764
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.59 E-value=4.4e-08 Score=117.67 Aligned_cols=177 Identities=13% Similarity=0.130 Sum_probs=109.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCeecCCCCHHHHhcce-EEEccCCCCCchhHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVNLKEFQLKWIREKI-GLVSQEPVLLSSSIR 478 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i-~~v~Q~~~l~~~ti~ 478 (1236)
+.|+++..-+++|+++.|.|++|+|||||+..+++...+..| .|.+-+. +.+...+.+++ +....- . .
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~------~-~ 260 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNI------N-A 260 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTC------C-H
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCC------C-H
Confidence 478888888999999999999999999999999887766545 4554332 23334433331 110000 0 1
Q ss_pred HHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCH
Q 040099 479 DNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDS 556 (1236)
Q Consensus 479 ~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~ 556 (1236)
+.+.-| ..++++.....+.. +.+...| -.+.. ...+|.+|.+ +.||++. .+|+++++|+++.-.++
T Consensus 261 ~~l~~g--~l~~~~~~~~~~a~---~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~ 328 (454)
T 2r6a_A 261 QNLRTG--KLTPEDWGKLTMAM---GSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGS 328 (454)
T ss_dssp HHHHTS--CCCHHHHHHHHHHH---HHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCS
T ss_pred HHHhcC--CCCHHHHHHHHHHH---HHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccC
Confidence 123323 23444443333222 2232222 11222 2478999876 5667776 68999999999998743
Q ss_pred H--------HHHHHHHHHHHHcc--CceEEEEec---------C--ch--------hHh-hcCeEEEEECCEE
Q 040099 557 E--------SGRMVQEALDRVMI--NRTTVIVSH---------R--LS--------LIR-NANIIAVIQQGKI 599 (1236)
Q Consensus 557 ~--------~~~~i~~~l~~~~~--~~t~i~itH---------~--~~--------~~~-~ad~i~vl~~G~i 599 (1236)
. ....+.+.|+.+.+ +.++|+++| + +. .+. .||.|++|..++.
T Consensus 329 ~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 329 GRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp CC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred CCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 1 22456666666643 789999999 1 32 344 4999999987654
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=98.59 E-value=6.1e-09 Score=117.27 Aligned_cols=73 Identities=19% Similarity=0.276 Sum_probs=44.4
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE---CCeecccCChHHHhcceEEEcCCCCCCh-----hhHHH
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL---DGVEIQKLQVKWLRQQMGVVSQEPVLFS-----DTIRA 1105 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i---dG~di~~i~~~~lR~~i~~V~Qdp~LF~-----gTIre 1105 (1236)
+++.+|++++|+|+||+|||||+++|.|...|..|+|.+ +|.++.... +.++..+++|+|.|-++. -|+ |
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-~~~~~~~g~v~dtpg~~~~~l~~lt~-e 245 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-ELIHTSGGLVADTPGFSSLEFTDIEE-E 245 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-CEEEETTEEEESSCSCSSCCCTTCCH-H
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-HHhhcCCEEEecCCCccccccccCCH-H
Confidence 356789999999999999999999999999999999999 888876532 222323899999997654 477 8
Q ss_pred HHH
Q 040099 1106 NIA 1108 (1236)
Q Consensus 1106 NL~ 1108 (1236)
||.
T Consensus 246 ~l~ 248 (307)
T 1t9h_A 246 ELG 248 (307)
T ss_dssp HHG
T ss_pred HHH
Confidence 883
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=98.56 E-value=3.4e-08 Score=118.66 Aligned_cols=172 Identities=10% Similarity=0.179 Sum_probs=106.1
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEEECCeecccCChHHHhcce-----EEEcCCCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HITLDGVEIQKLQVKWLRQQM-----GVVSQEPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~idG~di~~i~~~~lR~~i-----~~V~Qdp~LF~ 1100 (1236)
+.|++++.-+++|+.+.|.||+|+|||||+..+.+...+..| .+.+-+. +.+...+++++ ++-+|+ +.+
T Consensus 191 ~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~---E~s~~~l~~r~~~~~~~~~~~~--l~~ 265 (454)
T 2r6a_A 191 TELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL---EMSAQQLVMRMLCAEGNINAQN--LRT 265 (454)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES---SSCHHHHHHHHHHHHHTCCHHH--HHT
T ss_pred HHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC---CCCHHHHHHHHHHHHcCCCHHH--Hhc
Confidence 468999988999999999999999999999999887765445 5665443 34445555443 222211 111
Q ss_pred hhHHH-HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHH--------H
Q 040099 1101 DTIRA-NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDIE--------S 1169 (1236)
Q Consensus 1101 gTIre-NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~--------t 1169 (1236)
|.+.+ ...+...+.+.+...| -.+.. ...+|.+|.+ +.+|++. .+|+++|+|+++.-.+.. .
T Consensus 266 g~l~~~~~~~~~~a~~~l~~~~----l~i~d-~~~~s~~~i~--~~~~~l~~~~~~~livID~l~~~~~~~~~~~~~~~~ 338 (454)
T 2r6a_A 266 GKLTPEDWGKLTMAMGSLSNAG----IYIDD-TPSIRVSDIR--AKCRRLKQESGLGMIVIDYLQLIQGSGRSKENRQQE 338 (454)
T ss_dssp SCCCHHHHHHHHHHHHHHHSSC----EEEEC-CTTCCHHHHH--HHHHHHHTTTCCCEEEEECGGGSCCSCC----CHHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCC----EEEEC-CCCCCHHHHH--HHHHHHHHHcCCCEEEEccHHHhccCCCCCCCHHHH
Confidence 11110 0011111111111111 11222 2468999876 6777776 579999999999977432 1
Q ss_pred HHHHHHHHHHHc--CCCeEEEEec-----------Cch--------hhh-hcCEEEEEeCCEE
Q 040099 1170 ERVVQDALDQVM--VDRTTLVVAH-----------RLS--------TIK-NAHLIAVVSQGMI 1210 (1236)
Q Consensus 1170 e~~I~~~L~~~~--~~~TvI~IaH-----------Rl~--------ti~-~aD~I~Vl~~G~I 1210 (1236)
-..+.+.|+.+. .++|||+++| |+. .+. .||.|++|..++.
T Consensus 339 i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 339 VSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp HHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 244555565543 3789999999 132 343 5999999987654
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=98.56 E-value=1.9e-09 Score=116.14 Aligned_cols=75 Identities=13% Similarity=0.157 Sum_probs=52.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC--------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-------- 1081 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-------- 1081 (1236)
.++++|+...|. . +|++++ +.++|+||||||||||+++|.+++.|++|+|.++|.++...+
T Consensus 9 ~l~l~~~~~~~~--------~--~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 77 (227)
T 1qhl_A 9 SLTLINWNGFFA--------R--TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGL 77 (227)
T ss_dssp EEEEEEETTEEE--------E--EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------C
T ss_pred EEEEEeeecccC--------C--EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccch
Confidence 477888765442 1 566667 899999999999999999999999999999999999984332
Q ss_pred hHHHhcceEEEcCC
Q 040099 1082 VKWLRQQMGVVSQE 1095 (1236)
Q Consensus 1082 ~~~lR~~i~~V~Qd 1095 (1236)
...+|..+++|+|+
T Consensus 78 ~~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 78 HGKLKAGVCYSMLD 91 (227)
T ss_dssp GGGBCSSEEEEEEE
T ss_pred hhHhhcCcEEEEEe
Confidence 23357789999995
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=98.56 E-value=2.6e-10 Score=126.19 Aligned_cols=139 Identities=19% Similarity=0.231 Sum_probs=95.5
Q ss_pred EEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1012 QFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1012 ~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
+++++...|.. ..+++++++++++| ++|+||+|||||||+++|.+... .|.|.++|.++.+......++++..
T Consensus 27 ~l~~l~~~~~~---~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~~~~~~i~~ 99 (254)
T 1ixz_A 27 ELKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 99 (254)
T ss_dssp HHHHHHHHHHC---HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTTHHHHHHHH
T ss_pred HHHHHHHHHHC---HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhhHHHHHHHH
Confidence 45566666642 24799999999999 99999999999999999999885 7999999988766555555667777
Q ss_pred EcCCCC-CC-hhhHHHHHHHHhhhchH-----HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1092 VSQEPV-LF-SDTIRANIAEMANANGF-----ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1092 V~Qdp~-LF-~gTIreNL~~~a~~~~~-----i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
++|++. .+ .-++.||++........ -....+-.+..+ ..|||||+||..+++|+..+|++ ||++.-
T Consensus 100 ~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll----~~l~g~~~~~~~i~~a~t~~p~~--ld~~l~ 172 (254)
T 1ixz_A 100 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL----VEMDGFEKDTAIVVMAATNRPDI--LDPALL 172 (254)
T ss_dssp HHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH----HHHHTCCTTCCEEEEEEESCGGG--SCGGGG
T ss_pred HHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH----HHHhCCCCCCCEEEEEccCCchh--CCHHHc
Confidence 888753 22 23555666432211000 000000011112 24789999999999999999987 788764
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.54 E-value=5.9e-09 Score=109.55 Aligned_cols=83 Identities=22% Similarity=0.306 Sum_probs=66.4
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCC-------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYD-------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLL 473 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~-------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~ 473 (1236)
|+...+|++++|+||||||||||++.|.+.++ |..|+ +||++...++.+.+++.+ .|+.+++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle 87 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLE 87 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEE
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhh
Confidence 34455899999999999999999999999886 77888 799998888888888765 6889999
Q ss_pred chhHHHHHhcCCCCCCHHHHHHHHH
Q 040099 474 SSSIRDNIAYGKTHATKEEIQAAAE 498 (1236)
Q Consensus 474 ~~ti~~ni~~g~~~~~~~~~~~~~~ 498 (1236)
.+++.+| .||.+ .+.+.++++
T Consensus 88 ~~~~~~n-~YGt~---~~~v~~~l~ 108 (197)
T 3ney_A 88 FGSYQGN-MFGTK---FETVHQIHK 108 (197)
T ss_dssp EEEETTE-EEEEE---HHHHHHHHH
T ss_pred hhhhhce-ecccc---hhhHHHHHh
Confidence 9999999 58854 344554443
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=98.54 E-value=2.9e-08 Score=123.54 Aligned_cols=144 Identities=17% Similarity=0.203 Sum_probs=100.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC-cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~-G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.+++++++.+++|+.+.|+||+|+|||||+++|.++.++.. |.+.+++.+.... ...++++||... ..+.+
T Consensus 48 ~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~-----~p~i~~~p~g~~---~~~~e 119 (604)
T 3k1j_A 48 HAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDEN-----MPRIKTVPACQG---RRIVE 119 (604)
T ss_dssp HHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTT-----SCEEEEEETTHH---HHHHH
T ss_pred hhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCccccc-----CCcEEEEecchH---HHHHH
Confidence 48999999999999999999999999999999999999887 8899988766543 456888887541 11111
Q ss_pred HHHHHhhh-----------------------------chHHHhhhhchhhhhc------CCCCCCChhHHHHHHHHHHHc
Q 040099 1106 NIAEMANA-----------------------------NGFISGLQEGYDTLVG------ERGVQLSGGQKQRVAIARAIV 1150 (1236)
Q Consensus 1106 NL~~~a~~-----------------------------~~~i~~lp~Gldt~vg------e~G~~LSGGQrQRlaLARALl 1150 (1236)
-....+.. ..++......+...+| .....+|+|++|++..++...
T Consensus 120 ~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~~~~g~~~~i~~g~~~~ 199 (604)
T 3k1j_A 120 KYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGGLGTPAHERVEPGMIHR 199 (604)
T ss_dssp HHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----CCCCGGGGEECCHHHH
T ss_pred HHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCCccccccccccCceeee
Confidence 11100000 0000000000111122 112359999999999999999
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHH
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQ 1179 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~ 1179 (1236)
.++.+|+|||... |++.....+.++|++
T Consensus 200 a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~ 227 (604)
T 3k1j_A 200 AHKGVLFIDEIAT-LSLKMQQSLLTAMQE 227 (604)
T ss_dssp TTTSEEEETTGGG-SCHHHHHHHHHHHHH
T ss_pred cCCCEEEEechhh-CCHHHHHHHHHHHHc
Confidence 9999999999998 899988888888874
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=2.9e-08 Score=105.26 Aligned_cols=134 Identities=22% Similarity=0.279 Sum_probs=75.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc-----CCC------CcEEEECCeecc----cC-ChHHHhcceEEEcCCCC--C--Ch
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY-----DPS------SGHITLDGVEIQ----KL-QVKWLRQQMGVVSQEPV--L--FS 1100 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~-----~~~------~G~I~idG~di~----~i-~~~~lR~~i~~V~Qdp~--L--F~ 1100 (1236)
+++|+|++|||||||++.|.+.. .|+ .|+|.++|.++. +. ..+..|+......|++. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 233 678999997652 22 22334433333334432 1 32
Q ss_pred hhH---HHHHHHHhhhchHHHhh-hhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHH
Q 040099 1101 DTI---RANIAEMANANGFISGL-QEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQD 1175 (1236)
Q Consensus 1101 gTI---reNL~~~a~~~~~i~~l-p~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~ 1175 (1236)
.+- .+++.... ..+... +.+.. -.++..- .|..-.......||++.++|+++++| ||++|...-..+.+
T Consensus 87 ~~~~~s~~~~~~~~---~~~~~~~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~ 160 (199)
T 2f9l_A 87 IAKHLTYENVERWL---KELRDHADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE--TSALDSTNVEEAFK 160 (199)
T ss_dssp TTCHHHHHTHHHHH---HHHHHHSCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHH
T ss_pred CcCHHHHHHHHHHH---HHHHHhcCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHH
Confidence 221 23332111 001110 00000 0111110 11110111235689999999999999 99999999888888
Q ss_pred HHHHH
Q 040099 1176 ALDQV 1180 (1236)
Q Consensus 1176 ~L~~~ 1180 (1236)
.|.+.
T Consensus 161 ~l~~~ 165 (199)
T 2f9l_A 161 NILTE 165 (199)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.47 E-value=2.2e-08 Score=105.24 Aligned_cols=69 Identities=25% Similarity=0.349 Sum_probs=59.7
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS 1100 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~ 1100 (1236)
+...+|+.++|+||||||||||++.|.+.++ |..|+ +||+|..-++.+.+++.+ .|+.+++.
T Consensus 14 ~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~~~~~~~vs~TTR~p~~gE--~~G~~y~fvs~~~f~~~i---~~~~fle~ 88 (197)
T 3ney_A 14 LYFQGRKTLVLIGASGVGRSHIKNALLSQNPEKFVYPVPYTTRPPRKSE--EDGKEYHFISTEEMTRNI---SANEFLEF 88 (197)
T ss_dssp --CCSCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCCCTTC--CTTSSCEECCHHHHHHHH---HTTCEEEE
T ss_pred CCCCCCCEEEEECcCCCCHHHHHHHHHhhCCccEEeeecccccCCcCCe--eccccceeccHHHhhhhh---hhhhhhhh
Confidence 3445899999999999999999999999986 67887 899999999999999875 69999998
Q ss_pred hhHHHHH
Q 040099 1101 DTIRANI 1107 (1236)
Q Consensus 1101 gTIreNL 1107 (1236)
+++.+|.
T Consensus 89 ~~~~~n~ 95 (197)
T 3ney_A 89 GSYQGNM 95 (197)
T ss_dssp EEETTEE
T ss_pred hhhhcee
Confidence 8888774
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.45 E-value=4e-08 Score=123.22 Aligned_cols=133 Identities=19% Similarity=0.147 Sum_probs=96.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhc-
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAY- 483 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~- 483 (1236)
|+++++|..++|+|++|+|||||++.|++...+ ..|+| .+|.++.+....+.++.+++.+|.+.++..+++.||.-
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~~e~~~giti~~~~~~~~~~~~~~nliDT 81 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTPEAKLHRTTVRTGVAPLLFRGHRVFLLDA 81 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSHHHHHTTSCCSCEEEEEEETTEEEEEEEC
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCHHHHhcCCeEEecceEEeeCCEEEEEEeC
Confidence 457889999999999999999999999987665 78988 78889999999888999999999988877766666542
Q ss_pred -CCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHH
Q 040099 484 -GKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMV 562 (1236)
Q Consensus 484 -g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i 562 (1236)
|..+. ..++ .+-.-..++.++++| |+.++|+.++..+
T Consensus 82 pG~~~f-~~~~----------------------------------------~~~l~~ad~~ilVvD-~~~g~~~qt~~~~ 119 (665)
T 2dy1_A 82 PGYGDF-VGEI----------------------------------------RGALEAADAALVAVS-AEAGVQVGTERAW 119 (665)
T ss_dssp CCSGGG-HHHH----------------------------------------HHHHHHCSEEEEEEE-TTTCSCHHHHHHH
T ss_pred CCccch-HHHH----------------------------------------HHHHhhcCcEEEEEc-CCcccchhHHHHH
Confidence 11110 0111 111113566788888 9999999988655
Q ss_pred HHHHHHHccCceEEEEecCchhH
Q 040099 563 QEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 563 ~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
..+. + .+.++|++.|+++..
T Consensus 120 ~~~~-~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 120 TVAE-R--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HHHH-H--TTCCEEEEEECGGGC
T ss_pred HHHH-H--ccCCEEEEecCCchh
Confidence 4443 2 367888999988753
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.42 E-value=2.5e-09 Score=124.05 Aligned_cols=137 Identities=13% Similarity=0.161 Sum_probs=86.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
.+|+++++++++|+.++|+||+|||||||+++|+|.+ +|++..-+ . +.+.++..+++++|...++ .|+
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~~--~---~~~~~~~~lg~~~q~~~~l----~dd 224 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNVN--L---PLDRLNFELGVAIDQFLVV----FED 224 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECCS--S---CTTTHHHHHGGGTTCSCEE----ETT
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEEe--c---cchhHHHHHHHhcchhHHH----HHH
Confidence 5899999999999999999999999999999999954 68776511 1 1112233478889887542 222
Q ss_pred HhcCCC---CC-CHHHHHHHHHHhccHHHHHh---------CCCCcc-----ccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 481 IAYGKT---HA-TKEEIQAAAEAANASHFIKN---------LPQGLD-----TNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 481 i~~g~~---~~-~~~~~~~~~~~~~~~~~i~~---------l~~g~~-----t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
+..... .. ..+.+. ....+.+.+.. -|+-++ -.+..+...+++|.+||++.+.+++.+|
T Consensus 225 ~~~~~~~~r~l~~~~~~~---~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~p 301 (377)
T 1svm_A 225 VKGTGGESRDLPSGQGIN---NLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKD 301 (377)
T ss_dssp CCCSTTTTTTCCCCSHHH---HHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCH
T ss_pred HHHHHHHHhhccccCcch---HHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCC
Confidence 222211 00 000010 01122222210 000000 1234455679999999999999999999
Q ss_pred CEEE-EeCcCC
Q 040099 543 RILL-LDEATS 552 (1236)
Q Consensus 543 ~ili-lDE~ts 552 (1236)
++++ ||+|+.
T Consensus 302 DLliyLd~~~~ 312 (377)
T 1svm_A 302 YLKHCLERSEF 312 (377)
T ss_dssp HHHHHHHTCTH
T ss_pred CeEEEEeCCHH
Confidence 9988 999997
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.41 E-value=2.7e-08 Score=103.81 Aligned_cols=80 Identities=19% Similarity=0.176 Sum_probs=57.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEE----------ECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVL----------IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
.+|++++|+||||||||||+++|.+++++ ..|.|. ++|.++...+...+++. +.|+.+++..++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 36999999999999999999999999863 445543 35666655666666653 56777888888888
Q ss_pred HHhcCCCCCCHHHHHHHH
Q 040099 480 NIAYGKTHATKEEIQAAA 497 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~ 497 (1236)
| .+|.+ .+.+.+++
T Consensus 80 n-~yg~~---~~~i~~~l 93 (180)
T 1kgd_A 80 A-MYGTK---LETIRKIH 93 (180)
T ss_dssp E-EEEEE---HHHHHHHH
T ss_pred c-ccccc---HHHHHHHH
Confidence 8 56643 34444444
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.39 E-value=2.6e-08 Score=103.95 Aligned_cols=67 Identities=18% Similarity=0.143 Sum_probs=51.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEE----------ECCeecccCChHHHhcceEEEcCCCCCChhhHHH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHIT----------LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRA 1105 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~----------idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIre 1105 (1236)
.+|+.++|+||||||||||+++|.+++++ ..|.|. +||+++..++.+.+++. ++|+.+++.+++.+
T Consensus 3 ~~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ttr~~~~ge~~g~~~~~~~~~~~~~~---~~~~~~l~~~~~~~ 79 (180)
T 1kgd_A 3 HMRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKDEENGKNYYFVSHDQMMQD---ISNNEYLEYGSHED 79 (180)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC---CCBTTTBEECCHHHHHHH---HHTTCEEEEEEETT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeeccCCCCCccccCCCeeEEeCHHHHHHH---HHcCCceEEEEEcC
Confidence 47999999999999999999999999874 445553 46777777777777763 56777777777666
Q ss_pred H
Q 040099 1106 N 1106 (1236)
Q Consensus 1106 N 1106 (1236)
|
T Consensus 80 n 80 (180)
T 1kgd_A 80 A 80 (180)
T ss_dssp E
T ss_pred c
Confidence 5
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.38 E-value=3.5e-08 Score=104.84 Aligned_cols=116 Identities=22% Similarity=0.322 Sum_probs=73.3
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE--EECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI--TLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I--~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
.+.+..++..++|+.++|+|+|||||||++++|.+.+. ..|.+ ++||.++.. .+++.+++.+|+ ..
T Consensus 13 ~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~~----~~~~~~~~~~~~-------~~ 80 (200)
T 3uie_A 13 EKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVRH----GLNRDLSFKAED-------RA 80 (200)
T ss_dssp CHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHTT----TTTTTCCSSHHH-------HH
T ss_pred CHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhhh----HhhcccCcChHH-------HH
Confidence 46788899999999999999999999999999999987 77988 999877753 233344444333 23
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCE--EEEecC
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKI--LLLDEA 1161 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~I--LlLDEa 1161 (1236)
+++........... ..|.. .+.. .++..+..-..+|+++++.++ +.||-|
T Consensus 81 ~~~~~~~~~~~~~~--~~~~~-vi~~----~~~~~~~~r~~~~~~~~~~~~~~v~L~a~ 132 (200)
T 3uie_A 81 ENIRRVGEVAKLFA--DAGII-CIAS----LISPYRTDRDACRSLLPEGDFVEVFMDVP 132 (200)
T ss_dssp HHHHHHHHHHHHHH--HTTCE-EEEE----CCCCCHHHHHHHHHTSCTTSEEEEEECCC
T ss_pred HHHHHHHHHHHHHH--hCCce-EEEe----cCCchHHHHHHHHHhcCCCCEEEEEEeCC
Confidence 33332222211111 12322 2322 122223334566888887777 667654
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=98.37 E-value=4.1e-09 Score=122.26 Aligned_cols=129 Identities=15% Similarity=0.242 Sum_probs=82.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh--h--
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD--T-- 1102 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g--T-- 1102 (1236)
.+|+++|+++++|+.++|+||+|||||||+++|.+.+ +|.+..- +. +.+.++..+++++|...+|-. +
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~~---~g~~~~~--~~---~~~~~~~~lg~~~q~~~~l~dd~~~~ 228 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLELC---GGKALNV--NL---PLDRLNFELGVAIDQFLVVFEDVKGT 228 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHHH---CCEEECC--SS---CTTTHHHHHGGGTTCSCEEETTCCCS
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhhc---CCcEEEE--ec---cchhHHHHHHHhcchhHHHHHHHHHH
Confidence 5899999999999999999999999999999999975 6777651 11 112233347788887643211 0
Q ss_pred ---HH-----HHHHHHhhhchHHHhh-hhchhh-------------hhcCCCCCCChhHHHHHHHHHHHccCCCEEE-Ee
Q 040099 1103 ---IR-----ANIAEMANANGFISGL-QEGYDT-------------LVGERGVQLSGGQKQRVAIARAIVKEPKILL-LD 1159 (1236)
Q Consensus 1103 ---Ir-----eNL~~~a~~~~~i~~l-p~Gldt-------------~vge~G~~LSGGQrQRlaLARALlr~p~ILl-LD 1159 (1236)
.| +.+.....+.+.+... +-..+| .+..+-..+++|.+||++.+.+++.+|++++ ||
T Consensus 229 ~~~~r~l~~~~~~~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l~~~pDLliyLd 308 (377)
T 1svm_A 229 GGESRDLPSGQGINNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDFRPKDYLKHCLE 308 (377)
T ss_dssp TTTTTTCCCCSHHHHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEECCCCHHHHHHHH
T ss_pred HHHHhhccccCcchHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhccCCCCCeEEEEe
Confidence 00 0000001111111100 000011 2334456789999999999988899999988 99
Q ss_pred cCCC
Q 040099 1160 EATS 1163 (1236)
Q Consensus 1160 EaTS 1163 (1236)
+|+.
T Consensus 309 ~~~~ 312 (377)
T 1svm_A 309 RSEF 312 (377)
T ss_dssp TCTH
T ss_pred CCHH
Confidence 9987
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.32 E-value=5.5e-07 Score=102.49 Aligned_cols=81 Identities=12% Similarity=0.166 Sum_probs=65.0
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC----hHHH-----hcceEEE-cCCCC
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ----VKWL-----RQQMGVV-SQEPV 1097 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~----~~~l-----R~~i~~V-~Qdp~ 1097 (1236)
++++++|++++|+.++|+|++|+||||++..|.+.+.+.+|+|.+.+.|+.... +..+ +..+.++ +|.+.
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 357899999999999999999999999999999999999999999998886443 1344 6789999 78765
Q ss_pred CChh-hHHHHHH
Q 040099 1098 LFSD-TIRANIA 1108 (1236)
Q Consensus 1098 LF~g-TIreNL~ 1108 (1236)
.... ++++|+.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 5544 5666664
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.31 E-value=8.9e-08 Score=102.21 Aligned_cols=52 Identities=21% Similarity=0.282 Sum_probs=43.9
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGK 485 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~ 485 (1236)
=++++|++++|+|++||||||+++.|.+.++ .+.+++||+.++++ +|+.++.
T Consensus 16 ~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~---~~~~~~~ 67 (207)
T 2qt1_A 16 PRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE---SEIETDK 67 (207)
T ss_dssp CCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG---GGSCBCT
T ss_pred ccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH---hHhhccc
Confidence 3678899999999999999999999999874 37899999988876 5665543
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.30 E-value=1.9e-07 Score=98.77 Aligned_cols=135 Identities=21% Similarity=0.245 Sum_probs=73.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC-----CCC------CcEEEECCeecC----CCC-HHHHhcceEEEccCCC--C--Cc
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY-----DPQ------AGEVLIDGVNLK----EFQ-LKWIREKIGLVSQEPV--L--LS 474 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~-----~~~------~G~i~~~g~~~~----~~~-~~~~r~~i~~v~Q~~~--l--~~ 474 (1236)
.++|+|++|||||||++.+.|.. .|+ .|+|.++|.++. +.+ .+..+.......|+.. + |+
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~~~~~~~~~t~~~~~~~~~i~~~g~~~~~~i~Dt~g~~~~~~~~~~~~~~~~~~i~v~d 86 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRNEFNLESKSTIGVEFATRSIQVDGKTIKAQIWDTAGQERYRRITSAYYRGAVGALLVYD 86 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSCCCC---CCCSCEEEEEEEEETTEEEEEEEEECSSGGGTTCCCHHHHTTCSEEEEEEE
T ss_pred EEEEECcCCCCHHHHHHHHhcCCCCCCCCCccceeEEEEEEEECCEEEEEEEEECCCchhhhhhhHHHHhcCCEEEEEEE
Confidence 68999999999999999999974 243 578999997652 222 1222222222223321 1 11
Q ss_pred hhH---HHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCcc-ccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCc
Q 040099 475 SSI---RDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLD-TNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550 (1236)
Q Consensus 475 ~ti---~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~-t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ 550 (1236)
.+- .+++. ..+.+..+. .+.+.. -.++.+- .|..-.......||+++.+|+++++|
T Consensus 87 ~~~~~s~~~~~--------~~~~~~~~~---------~~~~~~i~~v~nK~-Dl~~~~~~~~~~a~~l~~~~~~~~~d-- 146 (199)
T 2f9l_A 87 IAKHLTYENVE--------RWLKELRDH---------ADSNIVIMLVGNKS-DLRHLRAVPTDEARAFAEKNNLSFIE-- 146 (199)
T ss_dssp TTCHHHHHTHH--------HHHHHHHHH---------SCTTCEEEEEEECT-TCGGGCCSCHHHHHHHHHHTTCEEEE--
T ss_pred CcCHHHHHHHH--------HHHHHHHHh---------cCCCCeEEEEEECc-ccccccCcCHHHHHHHHHHcCCeEEE--
Confidence 110 11110 011111000 001110 1122211 12111112345689999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q 040099 551 TSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 551 ts~lD~~~~~~i~~~l~~~ 569 (1236)
||++|......+.+.|.+.
T Consensus 147 ~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 147 TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp CCTTTCTTHHHHHHHHHHH
T ss_pred EeCCCCCCHHHHHHHHHHH
Confidence 9999999888888777553
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.28 E-value=1e-06 Score=105.18 Aligned_cols=113 Identities=22% Similarity=0.362 Sum_probs=76.7
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
.++++++.+++| +.|+||+|+|||||++.+.+-.... -+.++
T Consensus 40 ~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~~--f~~is---------------------------------- 81 (476)
T 2ce7_A 40 KFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANVP--FFHIS---------------------------------- 81 (476)
T ss_dssp HHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTCC--EEEEE----------------------------------
T ss_pred HHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCCC--eeeCC----------------------------------
Confidence 678888888888 8999999999999999999843110 00010
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC----------CCCCHHHHHHHHHHH
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT----------SALDIESERVVQDAL 1177 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT----------SaLD~~te~~I~~~L 1177 (1236)
..++... .+| .|++++|-.+++|....|.||++||+. ++.|.+.++.+.+.+
T Consensus 82 -----~~~~~~~-------~~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL 143 (476)
T 2ce7_A 82 -----GSDFVEL-------FVG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLL 143 (476)
T ss_dssp -----GGGTTTC-------CTT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHH
T ss_pred -----HHHHHHH-------Hhc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHH
Confidence 1111110 011 267889999999999999999999994 467777777666666
Q ss_pred HHH-----cCCCeEEEEecCchhh
Q 040099 1178 DQV-----MVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1178 ~~~-----~~~~TvI~IaHRl~ti 1196 (1236)
... ..+..+|..||+.+.+
T Consensus 144 ~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 144 VEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHSCGGGTEEEEEEESCGGGS
T ss_pred HHHhccCCCCCEEEEEecCChhhh
Confidence 543 1345788899998654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.23 E-value=1.3e-07 Score=103.70 Aligned_cols=52 Identities=29% Similarity=0.356 Sum_probs=36.0
Q ss_pred cEEEEeE-EEECCCCCCCccccceeEEecC---CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 384 DIELKDV-NFSYPARPDEQILNGFCLLIPN---GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 384 ~i~~~~v-~f~y~~~~~~~~l~~i~~~i~~---g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++++|+ +|+|. .+.++|+|+||+|++ |++++|+|++||||||+.++|++.+
T Consensus 17 ~l~~~~~~~~~~~--~~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFD--EEQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEec--CcchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 99993 235799999999999 9999999999999999999999855
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.22 E-value=1.4e-06 Score=104.11 Aligned_cols=114 Identities=22% Similarity=0.314 Sum_probs=75.5
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
..++++++.+++| +.|+||+|+|||||++.+.+.... .+-++. .
T Consensus 39 ~~~~~~g~~~p~g--vLL~GppGtGKT~Laraia~~~~~----------------------~f~~is---------~--- 82 (476)
T 2ce7_A 39 SKFNRIGARMPKG--ILLVGPPGTGKTLLARAVAGEANV----------------------PFFHIS---------G--- 82 (476)
T ss_dssp HHHHTTTCCCCSE--EEEECCTTSSHHHHHHHHHHHHTC----------------------CEEEEE---------G---
T ss_pred HHHhhcCCCCCCe--EEEECCCCCCHHHHHHHHHHHcCC----------------------CeeeCC---------H---
Confidence 4677888888888 889999999999999999984310 011110 0
Q ss_pred HhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcC---------
Q 040099 481 IAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEAT--------- 551 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~t--------- 551 (1236)
.++...+ +| .|++++|-.+++|....|.||++||+.
T Consensus 83 ----------------------~~~~~~~-------~g------~~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~ 127 (476)
T 2ce7_A 83 ----------------------SDFVELF-------VG------VGAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAG 127 (476)
T ss_dssp ----------------------GGTTTCC-------TT------HHHHHHHHHHHHHHHTCSEEEEEETGGGTCCC----
T ss_pred ----------------------HHHHHHH-------hc------ccHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccc
Confidence 0000000 11 278899999999999999999999994
Q ss_pred -CCCCHHHHHHHHHHHHHHc-----cCceEEEEecCchhH
Q 040099 552 -SALDSESGRMVQEALDRVM-----INRTTVIVSHRLSLI 585 (1236)
Q Consensus 552 -s~lD~~~~~~i~~~l~~~~-----~~~t~i~itH~~~~~ 585 (1236)
++.|.+.++.+.+.+..+. .+..+|..||+++.+
T Consensus 128 ~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 128 LGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp -----CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 3566666665655555442 345778889998654
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.22 E-value=8.2e-07 Score=103.34 Aligned_cols=165 Identities=21% Similarity=0.278 Sum_probs=88.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc--ccCCCCcEEEECCeecccCChHHHhcceEEEcCCCC-CCh--h
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR--FYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPV-LFS--D 1101 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r--~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~-LF~--g 1101 (1236)
.+|++++++++ .|+|||++|||||||++.|.| +.++.+|.++-....+.-.+...-.+..+..++.+. .|. .
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 101 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDDGTREYAEFLHLPRKKFTDFA 101 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSSCSCCEEEETTSTTCCBSCHH
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCCcccceeeeecCCCcccCCHH
Confidence 47999999999 999999999999999999999 778888877655544322111111123344443331 111 2
Q ss_pred hHHHHHHHHhh-hch----HHH-------hhhhchh-hhhcCCC-------CCCChhHHHHHHHHHHHccCCCEEEEecC
Q 040099 1102 TIRANIAEMAN-ANG----FIS-------GLQEGYD-TLVGERG-------VQLSGGQKQRVAIARAIVKEPKILLLDEA 1161 (1236)
Q Consensus 1102 TIreNL~~~a~-~~~----~i~-------~lp~Gld-t~vge~G-------~~LSGGQrQRlaLARALlr~p~ILlLDEa 1161 (1236)
.+++.+.+... ..+ +-. .-|++.+ +.++-.| .+-++.++|+..++++.+++|+++||.-.
T Consensus 102 ~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~iilvv~ 181 (360)
T 3t34_A 102 AVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCIILAIS 181 (360)
T ss_dssp HHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEEEEEE
T ss_pred HHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEEEEee
Confidence 34444421111 000 000 0011100 1111112 24678899999999999999998888754
Q ss_pred CCCCCHHHHHHHHHHHHHHcC-C-CeEEEEecCchhh
Q 040099 1162 TSALDIESERVVQDALDQVMV-D-RTTLVVAHRLSTI 1196 (1236)
Q Consensus 1162 TSaLD~~te~~I~~~L~~~~~-~-~TvI~IaHRl~ti 1196 (1236)
.++.|..+.. ..+.++.... + +|++++++ .+.+
T Consensus 182 ~~~~~~~~~~-~~~l~~~~~~~~~~~i~V~nK-~Dl~ 216 (360)
T 3t34_A 182 PANQDLATSD-AIKISREVDPSGDRTFGVLTK-IDLM 216 (360)
T ss_dssp ETTSCGGGCH-HHHHHHHSCTTCTTEEEEEEC-GGGC
T ss_pred cccCCcCCHH-HHHHHHHhcccCCCEEEEEeC-CccC
Confidence 4555655433 3344444332 3 46665554 4443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.21 E-value=2e-07 Score=98.99 Aligned_cols=61 Identities=15% Similarity=0.099 Sum_probs=43.7
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCC
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL 472 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l 472 (1236)
.++.++|++++|+|||||||||++++|.+.+ |.+.++|.++... ....+..+++++|++.+
T Consensus 23 ~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~ 83 (200)
T 4eun_A 23 MMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDR 83 (200)
T ss_dssp -----CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHH
T ss_pred hhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCccc
Confidence 3667899999999999999999999999987 8999998776421 11122356888887543
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.21 E-value=1.1e-06 Score=102.36 Aligned_cols=46 Identities=30% Similarity=0.359 Sum_probs=36.0
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc--CCCCCCcEEEECCe
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR--FYDPQAGEVLIDGV 449 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~--~~~~~~G~i~~~g~ 449 (1236)
.+|++++++++ .+++||++|||||||++.|.| +.++.+|.+.-.+.
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~ 72 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPL 72 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCE
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcce
Confidence 58999999999 999999999999999999999 77888887654443
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.20 E-value=2.7e-07 Score=97.93 Aligned_cols=72 Identities=18% Similarity=0.141 Sum_probs=50.4
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHHH
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANI 1107 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreNL 1107 (1236)
+-.++-++|+.++|+|++||||||++++|.+.+ |.+.+||.++..- ....+...++++|++.++.. ++.+|+
T Consensus 21 ~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~ 93 (200)
T 4eun_A 21 QSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSP-ENIATMQRGIPLTDEDRWPWLRSLAEW 93 (200)
T ss_dssp -------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCH-HHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred HhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccH-HHHHHHhcCCCCCCcccccHHHHHHHH
Confidence 334677899999999999999999999999987 8999999887531 11223357899998765543 555655
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.18 E-value=6.6e-08 Score=102.67 Aligned_cols=60 Identities=27% Similarity=0.447 Sum_probs=46.8
Q ss_pred eEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE--EECCeecC
Q 040099 389 DVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV--LIDGVNLK 452 (1236)
Q Consensus 389 ~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i--~~~g~~~~ 452 (1236)
|++..+. ...+.+..++..++|++++|+|||||||||++++|++.+. ..|.+ ++||.++.
T Consensus 4 ~~~~~~~---~~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~~ 65 (200)
T 3uie_A 4 NIKWHEC---SVEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNVR 65 (200)
T ss_dssp ------C---CCCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHHT
T ss_pred CCccccc---ccCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchhh
Confidence 4554442 3457888999999999999999999999999999999987 78988 88886654
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.18 E-value=1.7e-07 Score=102.80 Aligned_cols=52 Identities=23% Similarity=0.393 Sum_probs=35.7
Q ss_pred cEEEeEE-EEECCCCCCcccccceeEEecC---CCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1010 EVQFLRV-SFKYPTRPHIEVFRDLCLTIPP---GKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1010 ~I~f~~V-sf~Y~~~~~~~vL~~is~~I~~---Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.++++|| +++|.+ ..++|+|+||+|++ |++++|+|++||||||+.++|.+.+
T Consensus 17 ~l~~~~~~~~~~~~--~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 17 LLETGSLLHSPFDE--EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp -----------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred ceEEcceeeEEecC--cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 5899999 999932 34699999999999 9999999999999999999999855
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1e-06 Score=102.21 Aligned_cols=142 Identities=11% Similarity=0.227 Sum_probs=84.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC-----------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCC----CchhHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD-----------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVL----LSSSIRD 479 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~-----------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l----~~~ti~~ 479 (1236)
+++|+|++|||||||++.|+|... |+.|.|.++|.++. +....|++.|.|.- |..| .+
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~------l~DT~G~i~~lp~~lve~f~~t-l~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM------LVDTVGFIRGIPPQIVDAFFVT-LS 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE------EEECCCBCSSCCGGGHHHHHHH-HH
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE------EEeCCCchhcCCHHHHHHHHHH-HH
Confidence 499999999999999999999765 67799999997653 22346666664431 2222 22
Q ss_pred HHhcCC-----CCCC--HHHHHHHHHHhccHHHHHhCC-CCc-cccccCCCCCCChHHHHHHHHH----HHh-cCCCCEE
Q 040099 480 NIAYGK-----THAT--KEEIQAAAEAANASHFIKNLP-QGL-DTNVGEHGIQLSGGQKQRVAIA----RAM-IKDPRIL 545 (1236)
Q Consensus 480 ni~~g~-----~~~~--~~~~~~~~~~~~~~~~i~~l~-~g~-~t~~g~~g~~LSgGqkqRiaiA----Ral-~~~p~il 545 (1236)
.+.... -+.+ ..+..+..+. ..+.+..+. .+. --.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~--~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQS--SFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHH--HHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE-
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHH--HHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE-
Confidence 222110 0111 1011111111 112222220 111 1224555556888899988877 776 555555
Q ss_pred EEeCcCCCCCHHHHHHHHHHHHHH
Q 040099 546 LLDEATSALDSESGRMVQEALDRV 569 (1236)
Q Consensus 546 ilDE~ts~lD~~~~~~i~~~l~~~ 569 (1236)
+|+|++|......+.+.|.+.
T Consensus 331 ---~~~SA~~g~gi~~L~~~I~~~ 351 (364)
T 2qtf_A 331 ---IPISALKRTNLELLRDKIYQL 351 (364)
T ss_dssp ---EECBTTTTBSHHHHHHHHHHH
T ss_pred ---EEEECCCCcCHHHHHHHHHHH
Confidence 899999999888888888665
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.17 E-value=3.7e-08 Score=118.38 Aligned_cols=139 Identities=19% Similarity=0.259 Sum_probs=96.2
Q ss_pred EEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 386 ELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 386 ~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
+++++...|. +..+++++++++++| +.|+||+|+|||||++.|.+... .|.+.++|.++.+......++++..
T Consensus 42 ~l~~lv~~l~---~~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~ 114 (499)
T 2dhr_A 42 ELKEIVEFLK---NPSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRD 114 (499)
T ss_dssp HHHHHHHHHH---CGGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHH
T ss_pred HHHHHHHHhh---chhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHH
Confidence 3445544453 235899999999999 99999999999999999999875 7899999988765544444566778
Q ss_pred EccCCC-CCch-hHHHHH-hcCCCCC-----CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 466 VSQEPV-LLSS-SIRDNI-AYGKTHA-----TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 466 v~Q~~~-l~~~-ti~~ni-~~g~~~~-----~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|+.. ..+. .+.|+| .++.... ..++..+.+. .++. .|||||+|+..+++|
T Consensus 115 lfq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~-----~LL~---------------~Ldg~~~~~~viviA 174 (499)
T 2dhr_A 115 LFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLN-----QLLV---------------EMDGFEKDTAIVVMA 174 (499)
T ss_dssp HTTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHHHHHH-----HHHH---------------HGGGCCSSCCCEEEE
T ss_pred HHHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHHHHHH-----HHHH---------------HhcccccCccEEEEE
Confidence 888764 2322 556676 3432211 1222222211 1221 378999999999999
Q ss_pred hcCCCCEEEEeCcCCC
Q 040099 538 MIKDPRILLLDEATSA 553 (1236)
Q Consensus 538 l~~~p~ililDE~ts~ 553 (1236)
...+|++ ||||.-.
T Consensus 175 atn~p~~--LD~aLlr 188 (499)
T 2dhr_A 175 ATNRPDI--LDPALLR 188 (499)
T ss_dssp CCSCGGG--SCTTTSS
T ss_pred ecCChhh--cCccccc
Confidence 9999987 8998753
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.17 E-value=1.5e-07 Score=100.58 Aligned_cols=71 Identities=24% Similarity=0.258 Sum_probs=45.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC-CCcEEE----------ECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDP-QAGEVL----------IDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~-~~G~i~----------~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
++|++++|+||||||||||++.|.+.++| ..+.+. .+|.+....+...+++.+ .|+.++...++.+
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~~~ 82 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEYVG 82 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEETT
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEEcc
Confidence 68999999999999999999999999976 333332 234343334444444432 3445555555555
Q ss_pred HHhcCC
Q 040099 480 NIAYGK 485 (1236)
Q Consensus 480 ni~~g~ 485 (1236)
| .||.
T Consensus 83 ~-~yg~ 87 (208)
T 3tau_A 83 N-YYGT 87 (208)
T ss_dssp E-EEEE
T ss_pred c-cCCC
Confidence 5 3443
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=98.17 E-value=1.3e-06 Score=101.16 Aligned_cols=130 Identities=16% Similarity=0.277 Sum_probs=77.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC-----------CCCcEEEECCeecccCChHHHhcceEEEcCCCCC----ChhhHHH
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD-----------PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL----FSDTIRA 1105 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~-----------~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~L----F~gTIre 1105 (1236)
+|+|||++|||||||++.|.+... |..|.|.++|.++.-+ ...|++.|.|.- |..|+ +
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~l~------DT~G~i~~lp~~lve~f~~tl-~ 253 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIMLV------DTVGFIRGIPPQIVDAFFVTL-S 253 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEEEE------ECCCBCSSCCGGGHHHHHHHH-H
T ss_pred EEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEEEE------eCCCchhcCCHHHHHHHHHHH-H
Confidence 399999999999999999999765 6779999999765322 234555543321 11111 1
Q ss_pred HHH--------------------HHhhhchHHHhhh-hchh-hhhcCCCCCCChhHHHHHHHH----HHH-ccCCCEEEE
Q 040099 1106 NIA--------------------EMANANGFISGLQ-EGYD-TLVGERGVQLSGGQKQRVAIA----RAI-VKEPKILLL 1158 (1236)
Q Consensus 1106 NL~--------------------~~a~~~~~i~~lp-~Gld-t~vge~G~~LSGGQrQRlaLA----RAL-lr~p~ILlL 1158 (1236)
.+. ......+.+..+. .+.. -.|+.+...+|+|++||+.++ +++ ..+|++
T Consensus 254 ~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~~~~~--- 330 (364)
T 2qtf_A 254 EAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSPIFDV--- 330 (364)
T ss_dssp GGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSCEEEE---
T ss_pred HHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCCCCcE---
Confidence 110 0000011111110 0000 012233345788899988877 666 545555
Q ss_pred ecCCCCCCHHHHHHHHHHHHHHc
Q 040099 1159 DEATSALDIESERVVQDALDQVM 1181 (1236)
Q Consensus 1159 DEaTSaLD~~te~~I~~~L~~~~ 1181 (1236)
+|||++|.+.-..+.+.|.+..
T Consensus 331 -~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 331 -IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp -EECBTTTTBSHHHHHHHHHHHH
T ss_pred -EEEECCCCcCHHHHHHHHHHHh
Confidence 8999999999999988887653
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.15 E-value=6.5e-07 Score=94.88 Aligned_cols=45 Identities=20% Similarity=0.093 Sum_probs=25.1
Q ss_pred ECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1019 KYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1019 ~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+||+.+..++++||||++++|++++|+|++||||||+.+.|.+.+
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 5 HHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 576666778999999999999999999999999999999999876
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.15 E-value=8.4e-08 Score=116.70 Aligned_cols=72 Identities=26% Similarity=0.294 Sum_probs=54.4
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEE-ECCeecCC-------CCH---HHHhcceEEEccCCCCCch
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVL-IDGVNLKE-------FQL---KWIREKIGLVSQEPVLLSS 475 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~-~~g~~~~~-------~~~---~~~r~~i~~v~Q~~~l~~~ 475 (1236)
..+++|++++|+|+||||||||+++|++.+.|++| ++. +||.++.. ++. ...++++++++|+ -
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~~~l~~~l~f~~~~r~~~~r~i~~v~q~-----l 438 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVRRHLSSELGFSKAHRDVNVRRIGFVASE-----I 438 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHHHHTTSSCCCSHHHHHHHHHHHHHHHHH-----H
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHHHhhccccCCCHHHHHHHHHHHHHHHHH-----H
Confidence 36789999999999999999999999999999987 784 99977632 222 2234568888886 2
Q ss_pred hHHHHHhcC
Q 040099 476 SIRDNIAYG 484 (1236)
Q Consensus 476 ti~~ni~~g 484 (1236)
+..+|+.+.
T Consensus 439 ~~~~~ivi~ 447 (552)
T 3cr8_A 439 TKNRGIAIC 447 (552)
T ss_dssp HHTTCEEEE
T ss_pred HhcCCEEEE
Confidence 455565543
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.15 E-value=4.9e-07 Score=96.13 Aligned_cols=62 Identities=18% Similarity=0.143 Sum_probs=41.1
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~L 1098 (1236)
++|++|+.++|+|+|||||||++++|.+++.|..| +.+ +...+... ...+..+++++|++..
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~~ 62 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRDA 62 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHHH
Confidence 47899999999999999999999999999977655 222 22222211 1122347788887643
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.14 E-value=7.2e-07 Score=101.51 Aligned_cols=72 Identities=21% Similarity=0.196 Sum_probs=57.1
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCH----HHH-----hcceEEE-ccCCC
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQL----KWI-----REKIGLV-SQEPV 471 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~----~~~-----r~~i~~v-~Q~~~ 471 (1236)
++++++|++++|++++++|++|+||||++..|++.+.+..|+|.+.+.|+..... ..+ +.++.++ +|...
T Consensus 94 ~~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~ 173 (320)
T 1zu4_A 94 KKYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN 173 (320)
T ss_dssp --CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT
T ss_pred cccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC
Confidence 3467888899999999999999999999999999999999999998888754321 233 5678999 67644
Q ss_pred CC
Q 040099 472 LL 473 (1236)
Q Consensus 472 l~ 473 (1236)
..
T Consensus 174 ~~ 175 (320)
T 1zu4_A 174 AD 175 (320)
T ss_dssp CC
T ss_pred CC
Confidence 33
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.13 E-value=8.1e-07 Score=94.45 Aligned_cols=61 Identities=18% Similarity=0.145 Sum_probs=40.3
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+++++|++++|+|||||||||++++|.+.+.|+.| +.+ +...+... ...+..++|++|++.
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~-~~i-~~~~~~~~-~~~~~~~~~~~~~~~ 61 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK-YSI-SMTTRQMR-EGEVDGVDYFFKTRD 61 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE-CCC-CEECSCCC-TTCCBTTTBEECCHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE-Eec-ccccCCCC-CCccCCCceEEcCHH
Confidence 46889999999999999999999999999977655 212 22222211 111234778888753
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.13 E-value=2.4e-06 Score=98.03 Aligned_cols=68 Identities=18% Similarity=0.176 Sum_probs=48.7
Q ss_pred ccccceeE--EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EECCeecCCCCHHHHhcceEEEccCCC
Q 040099 401 QILNGFCL--LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 401 ~~l~~i~~--~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
+.|+.+-= -+++|+++.|.||+|||||||+..+++...+..|.+ ++++.+.. + ..+.+++|+.+|+..
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~ 117 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLL 117 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCE
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhh
Confidence 34555422 488999999999999999999999999888877865 66654322 1 224456777766543
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-06 Score=92.54 Aligned_cols=48 Identities=25% Similarity=0.300 Sum_probs=40.3
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g 1101 (1236)
++-=++++|+.++|+|++||||||+++.|.+.++ .+.+++||+++|++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~-----------------------~~~~i~~D~~~~~~ 60 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP-----------------------NCSVISQDDFFKPE 60 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST-----------------------TEEEEEGGGGBCCG
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC-----------------------CcEEEeCCccccCH
Confidence 4445788999999999999999999999999875 36788888887765
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.09 E-value=1.3e-06 Score=92.65 Aligned_cols=46 Identities=15% Similarity=0.049 Sum_probs=25.0
Q ss_pred EECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 392 FSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 392 f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+|+.++...+++||||++++|++++|+|++||||||+.+.|++.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 4 HHHHSSGVDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp --------------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCCCCCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 3566556678999999999999999999999999999999999866
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.08 E-value=5e-07 Score=102.68 Aligned_cols=57 Identities=16% Similarity=0.181 Sum_probs=51.2
Q ss_pred CccccEEEeEEEEECCCCCCccccc--------------ceeEEecCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFR--------------DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~--------------~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
...+.|.|+||+|.||.. ..+|+ |+++.|.+||+++|+|++|+|||||++.|.|+..
T Consensus 129 ~~~~ri~Fe~ltp~yP~e--r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i~ 199 (422)
T 3ice_A 129 NARNKILFENLTPLHANS--RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 199 (422)
T ss_dssp HHTTSCCTTTSCEESCCS--BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHHH
T ss_pred hhcCCceeccccccCCCC--ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHHh
Confidence 346789999999999964 45788 9999999999999999999999999999999863
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.07 E-value=1e-07 Score=108.27 Aligned_cols=55 Identities=15% Similarity=0.196 Sum_probs=50.1
Q ss_pred CCCcEEEEeEEEECCCCCCCcccc--------------ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 381 IRGDIELKDVNFSYPARPDEQILN--------------GFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 381 ~~~~i~~~~v~f~y~~~~~~~~l~--------------~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++.++|+||+|.||. ++.+|+ |+++.+.+|++++|+||+|+|||||++.|.++.
T Consensus 130 ~~~ri~Fe~ltp~yP~--er~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 130 ARNKILFENLTPLHAN--SRLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp HTTSCCTTTSCEESCC--SBCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred hcCCceeccccccCCC--CccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 4578999999999984 457899 999999999999999999999999999999975
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.03 E-value=2.5e-06 Score=108.74 Aligned_cols=144 Identities=18% Similarity=0.232 Sum_probs=85.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
.+..|+.+.|+|||||||||++.++.....+..| +| .++.+ -|-.......+.+.+.+..+..
T Consensus 105 ~l~~~~~vii~gpTGSGKTtllp~ll~~~~~~~~----~g------------~~ilv-l~P~r~La~q~~~~l~~~~~~~ 167 (773)
T 2xau_A 105 LYQNNQIMVFVGETGSGKTTQIPQFVLFDEMPHL----EN------------TQVAC-TQPRRVAAMSVAQRVAEEMDVK 167 (773)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHCGGG----GT------------CEEEE-EESCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCCeEEEECCCCCCHHHHHHHHHHHhccccC----CC------------ceEEe-cCchHHHHHHHHHHHHHHhCCc
Confidence 3567899999999999999988887655444332 01 01111 1110001112222222111110
Q ss_pred hHHHhhhhchh----hhh--cCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHcCC-CeE
Q 040099 1115 GFISGLQEGYD----TLV--GERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVMVD-RTT 1186 (1236)
Q Consensus 1115 ~~i~~lp~Gld----t~v--ge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~~~-~Tv 1186 (1236)
+ ..--|+. ... +..-.-+|+|+.+|..++++++.+++++|+|||.. ++|.+.-..+.+.+.....+ +++
T Consensus 168 --v-~~~vG~~i~~~~~~~~~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iI 244 (773)
T 2xau_A 168 --L-GEEVGYSIRFENKTSNKTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKII 244 (773)
T ss_dssp --B-TTTEEEEETTEEECCTTCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEE
T ss_pred --h-hheecceeccccccCCCCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEE
Confidence 0 0000111 000 11123578999999999999999999999999997 99988776666666665544 455
Q ss_pred EE-EecCchhhhh
Q 040099 1187 LV-VAHRLSTIKN 1198 (1236)
Q Consensus 1187 I~-IaHRl~ti~~ 1198 (1236)
++ .||..+.+..
T Consensus 245 l~SAT~~~~~l~~ 257 (773)
T 2xau_A 245 IMSATLDAEKFQR 257 (773)
T ss_dssp EEESCSCCHHHHH
T ss_pred EEeccccHHHHHH
Confidence 55 4898877654
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.02 E-value=8.4e-06 Score=94.60 Aligned_cols=123 Identities=16% Similarity=0.160 Sum_probs=81.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHh
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISG 1119 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~ 1119 (1236)
-++++||++|+|||||++.|.+.. + .+++.+..+. ...++.++++.. ...+.|
T Consensus 168 ~~v~lvG~~gvGKSTLin~L~~~~-~-----~~~~~~~~t~-----~~~~~~~~~~~~------------~~~l~D---- 220 (357)
T 2e87_A 168 PTVVIAGHPNVGKSTLLKALTTAK-P-----EIASYPFTTR-----GINVGQFEDGYF------------RYQIID---- 220 (357)
T ss_dssp CEEEEECSTTSSHHHHHHHHCSSC-C-----EEECCTTCSS-----CEEEEEEEETTE------------EEEEEE----
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC-C-----ccCCCCCeee-----ceeEEEEEecCc------------eEEEEe----
Confidence 479999999999999999998864 2 1222222211 112344443321 011111
Q ss_pred hhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEe-cCCCCCCHHHHHHHHHHHHHHcCCCeEEEEe--cCch
Q 040099 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLD-EATSALDIESERVVQDALDQVMVDRTTLVVA--HRLS 1194 (1236)
Q Consensus 1120 lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLD-EaTSaLD~~te~~I~~~L~~~~~~~TvI~Ia--HRl~ 1194 (1236)
.|+-.+ .....+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...+..+|+|. |++.
T Consensus 221 t~G~~~----~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 221 TPGLLD----RPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp CTTTSS----SCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred CCCccc----cchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 122111 223458999999887 66666788899999 9999999998888888887766688899998 7764
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.02 E-value=1.8e-05 Score=90.75 Aligned_cols=61 Identities=18% Similarity=0.263 Sum_probs=45.9
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE-EECCeecccCChHHHhcceEEEcCCCCC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-TLDGVEIQKLQVKWLRQQMGVVSQEPVL 1098 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I-~idG~di~~i~~~~lR~~i~~V~Qdp~L 1098 (1236)
-+++|+.+.|.||+|||||||+..+.+...+..|.+ +||+.+.. + ....+++++.+|+..+
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~--~-~~ra~rlgv~~~~l~i 118 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL--D-PVYAKNLGVDLKSLLI 118 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC--C-HHHHHHHTCCGGGCEE
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc--c-hHHHHHcCCchhhhhh
Confidence 589999999999999999999999999887777765 67664432 2 2245567776666443
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=3.5e-07 Score=99.37 Aligned_cols=64 Identities=19% Similarity=0.204 Sum_probs=50.6
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccC------ChHH----HhcceEEEcCCCCCCh
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKL------QVKW----LRQQMGVVSQEPVLFS 1100 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i------~~~~----lR~~i~~V~Qdp~LF~ 1100 (1236)
+.+.++|+.++|+|++||||||++++|.++ +|+|.++|.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 446689999999999999999999999998 79999999887532 1111 2567889999876654
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.7e-06 Score=90.10 Aligned_cols=66 Identities=17% Similarity=0.182 Sum_probs=47.6
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe--ecCCCCH----HHHhcceEEEccCC
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV--NLKEFQL----KWIREKIGLVSQEP 470 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~--~~~~~~~----~~~r~~i~~v~Q~~ 470 (1236)
+++++++.+| +++|+||||||||||+++|.+...+..|...-.+. ++-.... ...+..|.+++|++
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 6889999999 99999999999999999999988887765432221 1110000 01345799999986
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.97 E-value=2.2e-06 Score=91.13 Aligned_cols=69 Identities=16% Similarity=0.113 Sum_probs=43.9
Q ss_pred CChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH---hhcCeEEEEE
Q 040099 524 LSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI---RNANIIAVIQ 595 (1236)
Q Consensus 524 LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~---~~ad~i~vl~ 595 (1236)
.+.|+.+|..+++.+..+|+.+-.+ .+.++|...+.+.+.+... .+.++|+-+|.+... ..||.+++++
T Consensus 60 ~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~~~d~vi~l~ 131 (206)
T 1jjv_A 60 TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTALCDRILVVD 131 (206)
T ss_dssp ------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGGGCSEEEEEE
T ss_pred ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHhhCCEEEEEE
Confidence 4688999999999999888654333 3455666666666655543 356788888877553 4599999986
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.96 E-value=8.4e-08 Score=115.31 Aligned_cols=136 Identities=18% Similarity=0.209 Sum_probs=89.3
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEE
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVV 1092 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V 1092 (1236)
++++...|.. +.+++++++++++| +.|+||+|+|||||+++|.+... .|.|.++|.++.+......++++..+
T Consensus 43 l~~lv~~l~~---~~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g~~~~~v~~l 115 (499)
T 2dhr_A 43 LKEIVEFLKN---PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVGVGAARVRDL 115 (499)
T ss_dssp HHHHHHHHHC---GGGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTTHHHHHHHHH
T ss_pred HHHHHHHhhc---hhhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhhhHHHHHHHH
Confidence 4444444432 24799999999999 99999999999999999999875 78999999888665444555666677
Q ss_pred cCCCC-CChh-hHHHHHHHHhhh--------chHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1093 SQEPV-LFSD-TIRANIAEMANA--------NGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1093 ~Qdp~-LF~g-TIreNL~~~a~~--------~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
+|++. .+.+ .+.|+|+..... ++... +-++..+. .|||||+|+..+++|...+|++ ||||.
T Consensus 116 fq~a~~~~p~il~IDEId~l~~~r~~~~~~~~~e~~---~~l~~LL~----~Ldg~~~~~~viviAatn~p~~--LD~aL 186 (499)
T 2dhr_A 116 FETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDERE---QTLNQLLV----EMDGFEKDTAIVVMAATNRPDI--LDPAL 186 (499)
T ss_dssp TTTSSSSSSCEEEEECGGGTCCCSSSSTTTSSHHHH---HHHHHHHH----HGGGCCSSCCCEEEECCSCGGG--SCTTT
T ss_pred HHHHHhcCCCEEEEehHHHHHHhhccCcCCCcHHHH---HHHHHHHH----HhcccccCccEEEEEecCChhh--cCccc
Confidence 77653 1221 233343211100 00000 00111221 3788888888889999888887 88887
Q ss_pred CC
Q 040099 1163 SA 1164 (1236)
Q Consensus 1163 Sa 1164 (1236)
-.
T Consensus 187 lr 188 (499)
T 2dhr_A 187 LR 188 (499)
T ss_dssp SS
T ss_pred cc
Confidence 53
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.96 E-value=1.8e-07 Score=105.99 Aligned_cols=126 Identities=14% Similarity=0.193 Sum_probs=73.3
Q ss_pred CccccceeEEecCCc------EEEEEcCCCCcHHHHHHHHHcCCC--CCCcEEEECCeecCCCCHHHHhcceEEEccCCC
Q 040099 400 EQILNGFCLLIPNGT------IAALVGTSGSGKSTVISLIQRFYD--PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~------~~~ivG~sGsGKSTl~~ll~~~~~--~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~ 471 (1236)
.+.|++++..+.+++ ++||+||||||||||+++|.+++. |++|. ++++++|.+
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~-------------------v~~i~~D~f 133 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPN-------------------VEVITTDGF 133 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCC-------------------EEEEEGGGG
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCe-------------------EEEEeeccc
Confidence 357888888887776 999999999999999999999987 44554 455666665
Q ss_pred CCchhHHHHH----hcCCCCC-CHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEE
Q 040099 472 LLSSSIRDNI----AYGKTHA-TKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILL 546 (1236)
Q Consensus 472 l~~~ti~~ni----~~g~~~~-~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ili 546 (1236)
..+....+.. .+|.|.. +.+.+.+ ++..+..|-++. .- -..|-+..+|+.-+...+.+|+|+|
T Consensus 134 ~~~~~~l~~~~~~~~~g~P~~~D~~~l~~---------~L~~L~~g~~~v-~~--P~yd~~~~~r~~~~~~~v~~~dIVI 201 (321)
T 3tqc_A 134 LYSNAKLEKQGLMKRKGFPESYDMPSLLR---------VLNAIKSGQRNV-RI--PVYSHHYYDIVRGQYEIVDQPDIVI 201 (321)
T ss_dssp BCCHHHHHHTTCGGGTTSGGGBCHHHHHH---------HHHHHHTTCSSE-EE--EEEETTTTEEEEEEEEEECSCSEEE
T ss_pred ccchhhhhhHHHHhhccCcccccHHHHHH---------HHHhhhcccccc-cc--chhhhhccccccCceeeccCCCEEE
Confidence 5544333321 1233322 2222322 222222332100 00 0122222233333345567999999
Q ss_pred EeCcCCCCCH
Q 040099 547 LDEATSALDS 556 (1236)
Q Consensus 547 lDE~ts~lD~ 556 (1236)
++.+..-.|.
T Consensus 202 vEGi~lL~~~ 211 (321)
T 3tqc_A 202 LEGLNILQTG 211 (321)
T ss_dssp EECTTTTCCC
T ss_pred EEcccccccc
Confidence 9999876554
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=97.95 E-value=1.2e-05 Score=93.30 Aligned_cols=61 Identities=13% Similarity=0.109 Sum_probs=48.7
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEe-CcCCCCCHHHHHHHHHHHHHHccCceEEEEe--cCch
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLD-EATSALDSESGRMVQEALDRVMINRTTVIVS--HRLS 583 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililD-E~ts~lD~~~~~~i~~~l~~~~~~~t~i~it--H~~~ 583 (1236)
..+|+|++|++. +.+...++-++++| ++++++|.+....+.+.+.+...++.+|+|. |++.
T Consensus 230 ~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 230 SERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEEVHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp TTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHHHHHHTTTSCEEEEECCTTTC
T ss_pred hhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHHHHHhcCCCCEEEEEECcccC
Confidence 468999999887 66666788899999 9999999998877777777655577888888 6653
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.94 E-value=4e-06 Score=89.20 Aligned_cols=126 Identities=20% Similarity=0.238 Sum_probs=74.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
.+||+|++||||||+.+.|.++ |...+|+-++ .+.+. + | ++ +++.+ ...
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~--------~~~~~---~-~----~~--~~~~~------i~~-- 52 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVV--------AREVV---A-K----DS--PLLSK------IVE-- 52 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHH--------HHHTT---C-S----SC--HHHHH------HHH--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHH--------HHHHc---c-C----Ch--HHHHH------HHH--
Confidence 5899999999999999999983 6556654222 11111 0 1 10 11111 111
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh---h
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI---K 1197 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti---~ 1197 (1236)
..|+.. -.+.|+.+|..+++.+..+|..+-.+ ++.+++...+.+.+.+... .+.++|+-+|.+... .
T Consensus 53 ------~~g~~~-~~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~-~~~~vv~~~~~l~e~~~~~ 122 (206)
T 1jjv_A 53 ------HFGAQI-LTEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ-TAPYTLFVVPLLIENKLTA 122 (206)
T ss_dssp ------HHCTTC-C------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC-CSSEEEEECTTTTTTTCGG
T ss_pred ------HhCHHH-hccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc-CCCEEEEEechhhhcCcHh
Confidence 112221 23678999999999999888654333 3456677666666666543 356788888887664 4
Q ss_pred hcCEEEEEeC
Q 040099 1198 NAHLIAVVSQ 1207 (1236)
Q Consensus 1198 ~aD~I~Vl~~ 1207 (1236)
.||.+++++.
T Consensus 123 ~~d~vi~l~~ 132 (206)
T 1jjv_A 123 LCDRILVVDV 132 (206)
T ss_dssp GCSEEEEEEC
T ss_pred hCCEEEEEEC
Confidence 5999999863
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=97.94 E-value=1.1e-06 Score=93.90 Aligned_cols=64 Identities=25% Similarity=0.221 Sum_probs=46.2
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEEE----------ECCeecccCChHHHhcceEEEcCCCCCChhhH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHIT----------LDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTI 1103 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I~----------idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTI 1103 (1236)
++|+.++|+||||||||||++.|.+.+++ ..+.+. .+|++..-++...+++.+ .|+.+++.+++
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~~~tr~~~~~e~~g~~y~~~~~~~f~~~~---~~~~~le~~~~ 80 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSISMTTRLPREGEQDGVDYYFRSREVFEQAI---KDGKMLEYAEY 80 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCCEESSCCCTTCCBTTTBEECCHHHHHHHH---HTTCEEEEEEE
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEecccccCcCcccCCceeEEecHHHHHHHH---hcCcEEEEEEE
Confidence 68999999999999999999999999976 333333 456666666666666543 45555544443
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=97.93 E-value=1.3e-05 Score=102.22 Aligned_cols=65 Identities=12% Similarity=0.136 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHccC-ceEEE-EecCchhHh
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEALDRVMIN-RTTVI-VSHRLSLIR 586 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~l~~~~~~-~t~i~-itH~~~~~~ 586 (1236)
.-+|+|+.+|..++++++.+++++|+|||.. +||.+....+.+.+.+...+ +++++ .||+.+.+.
T Consensus 189 ~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~ 256 (773)
T 2xau_A 189 KYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQ 256 (773)
T ss_dssp EEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHH
T ss_pred EEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHH
Confidence 4589999999999999999999999999997 99988766666666555544 56666 489877664
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.93 E-value=2.1e-05 Score=92.35 Aligned_cols=158 Identities=20% Similarity=0.198 Sum_probs=95.9
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCCh----HHHhc-
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQV----KWLRQ- 1087 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~----~~lR~- 1087 (1236)
.++++..|.... ++++|+ +|+.++++|++||||||++..|.+.+.+.+|+|.+.+.|+..... ..+++
T Consensus 79 ~~~L~~~~~~~~-----~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~~~~ 151 (425)
T 2ffh_A 79 YEALKEALGGEA-----RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLLGEK 151 (425)
T ss_dssp HHHHHHHTTSSC-----CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHHHHH
T ss_pred HHHHHHHhCCCc-----ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHhccc
Confidence 344556664321 677887 899999999999999999999999999999999998888765332 22333
Q ss_pred -ceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh-hhchhhhhcCCCCCCC---hhHHHHHHHHHHHccCCCEEEEecCC
Q 040099 1088 -QMGVVSQEPVLFSDTIRANIAEMANANGFISGL-QEGYDTLVGERGVQLS---GGQKQRVAIARAIVKEPKILLLDEAT 1162 (1236)
Q Consensus 1088 -~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l-p~Gldt~vge~G~~LS---GGQrQRlaLARALlr~p~ILlLDEaT 1162 (1236)
.+-+++..+.--...+. .+.+..+ .+++|..+=+.+..++ .-..+...+++++.-++-+|++| ++
T Consensus 152 ~gv~v~~~~~~~~p~~i~---------~~~l~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~~pd~vlLVvD-a~ 221 (425)
T 2ffh_A 152 VGVPVLEVMDGESPESIR---------RRVEEKARLEARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD-AM 221 (425)
T ss_dssp HTCCEEECCTTCCHHHHH---------HHHHHHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE-GG
T ss_pred CCccEEecCCCCCHHHHH---------HHHHHHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhccCCceEEEEEe-cc
Confidence 24445443311111111 1223333 2566654433322332 34567778888887777788888 55
Q ss_pred CCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 040099 1163 SALDIESERVVQDALDQVMVDRTTLVVAH 1191 (1236)
Q Consensus 1163 SaLD~~te~~I~~~L~~~~~~~TvI~IaH 1191 (1236)
++.|.... + +.+.+. -+.+-++++|
T Consensus 222 tgq~av~~--a-~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 222 TGQEALSV--A-RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp GTTHHHHH--H-HHHHHH-TCCCEEEEES
T ss_pred chHHHHHH--H-HHHHhc-CCceEEEEeC
Confidence 56555432 2 233322 2446666665
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=97.92 E-value=2.8e-06 Score=88.38 Aligned_cols=66 Identities=15% Similarity=0.169 Sum_probs=48.0
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe--ecccCCh----HHHhcceEEEcCCC
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV--EIQKLQV----KWLRQQMGVVSQEP 1096 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~--di~~i~~----~~lR~~i~~V~Qdp 1096 (1236)
+++++++.+| .++|+||||||||||+.+|..+..+..|...-.+. ++-.... ...+..|.++.|+|
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~ 89 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNE 89 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECT
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCC
Confidence 7889999999 99999999999999999999988777665433331 1111110 02345788898886
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=97.86 E-value=5.5e-07 Score=97.80 Aligned_cols=64 Identities=17% Similarity=0.187 Sum_probs=48.1
Q ss_pred eEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC------CHHH----HhcceEEEccCCCCCc
Q 040099 407 CLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF------QLKW----IREKIGLVSQEPVLLS 474 (1236)
Q Consensus 407 ~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~------~~~~----~r~~i~~v~Q~~~l~~ 474 (1236)
+.+.++|++++|+|++||||||++++|.+. .|+|.+.+.|.... .... .++.+++++|++.++.
T Consensus 14 ~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~l~~ 87 (230)
T 2vp4_A 14 YAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPVEKWRNVNGVNLLELMYKDPKKWAMPFQSYVTLT 87 (230)
T ss_dssp BTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTHHHHTCBTTBCHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred cCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCHHHhhcccCCChHHHHHhChHhhhhhhHHHHHHH
Confidence 345679999999999999999999999998 78999998875421 1111 1456788888765543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=7.5e-06 Score=93.66 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=25.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5889999999999999999999888764
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.82 E-value=4.7e-06 Score=102.05 Aligned_cols=59 Identities=20% Similarity=0.329 Sum_probs=48.0
Q ss_pred EeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCe
Q 040099 1013 FLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075 (1236)
Q Consensus 1013 f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~ 1075 (1236)
.+++..+|. ...+++++++++ +|+.+.|+||+|+|||||+++|.+...+..|.|.++|.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 344555553 224788889988 89999999999999999999999999988888888773
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.81 E-value=3.8e-05 Score=90.32 Aligned_cols=40 Identities=33% Similarity=0.425 Sum_probs=35.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
++..++++|++||||||++..|.+.+.+..++|.+-+.|+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D~ 135 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAADV 135 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecCc
Confidence 5789999999999999999999999998888988866664
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=97.77 E-value=7e-05 Score=87.93 Aligned_cols=160 Identities=16% Similarity=0.166 Sum_probs=92.4
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH-HhcceEE
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW-IREKIGL 465 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~-~r~~i~~ 465 (1236)
.+++++.|++. . ++++|+ +|++++++|++||||||++..|++.+.+..|+|.+.+.|.......+ ++..
T Consensus 79 ~~~L~~~~~~~---~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~~r~aa~~qL~~~--- 148 (425)
T 2ffh_A 79 YEALKEALGGE---A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQRPAAREQLRLL--- 148 (425)
T ss_dssp HHHHHHHTTSS---C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCSSCHHHHHHHHHH---
T ss_pred HHHHHHHhCCC---c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccccCchhHHHHHHh---
Confidence 34556666421 1 567887 89999999999999999999999999999999998877765432211 2110
Q ss_pred EccCCCCCchhHHHHHhc--CCCCCCHHHH-HHHHHHhccHHHHHhC-CCCccccccCCCCCCC---hHHHHHHHHHHHh
Q 040099 466 VSQEPVLLSSSIRDNIAY--GKTHATKEEI-QAAAEAANASHFIKNL-PQGLDTNVGEHGIQLS---GGQKQRVAIARAM 538 (1236)
Q Consensus 466 v~Q~~~l~~~ti~~ni~~--g~~~~~~~~~-~~~~~~~~~~~~i~~l-~~g~~t~~g~~g~~LS---gGqkqRiaiARal 538 (1236)
.-..|+-+ ..+..+..++ .++. ..+ .++||..+=+-+..++ .-..+...+++++
T Consensus 149 ----------~~~~gv~v~~~~~~~~p~~i~~~~l---------~~~~~~~~DvVIIDTaG~l~~d~~l~~el~~i~~~~ 209 (425)
T 2ffh_A 149 ----------GEKVGVPVLEVMDGESPESIRRRVE---------EKARLEARDLILVDTAGRLQIDEPLMGELARLKEVL 209 (425)
T ss_dssp ----------HHHHTCCEEECCTTCCHHHHHHHHH---------HHHHHTTCSEEEEECCCCSSCCHHHHHHHHHHHHHH
T ss_pred ----------cccCCccEEecCCCCCHHHHHHHHH---------HHHHHCCCCEEEEcCCCcccccHHHHHHHHHhhhcc
Confidence 00111111 0111233333 2222 222 1366654433222332 3456777888888
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEec
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSH 580 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH 580 (1236)
..++-+|++| ++++.|..... +.+.+. -+.+-+++|+
T Consensus 210 ~pd~vlLVvD-a~tgq~av~~a---~~f~~~-l~i~GVIlTK 246 (425)
T 2ffh_A 210 GPDEVLLVLD-AMTGQEALSVA---RAFDEK-VGVTGLVLTK 246 (425)
T ss_dssp CCSEEEEEEE-GGGTTHHHHHH---HHHHHH-TCCCEEEEES
T ss_pred CCceEEEEEe-ccchHHHHHHH---HHHHhc-CCceEEEEeC
Confidence 7777788888 55665554321 222221 2456677775
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.74 E-value=8.8e-05 Score=86.73 Aligned_cols=123 Identities=17% Similarity=0.195 Sum_probs=69.7
Q ss_pred cCCC--EEEEEcCCCCChHHHHHHHhcccCCCC--cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhh
Q 040099 1037 PPGK--TIALVGESGSGKSTVISLLQRFYDPSS--GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMAN 1112 (1236)
Q Consensus 1037 ~~Ge--~vaIVG~SGSGKSTL~~lL~r~~~~~~--G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~ 1112 (1236)
++|. .+.|+||+|+||||+++.+.+...+.. .-+.++. .+..-...+...+.+..
T Consensus 40 ~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~--------------------~~~~~~~~~~~~l~~~l- 98 (389)
T 1fnn_A 40 PGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYING--------------------FIYRNFTAIIGEIARSL- 98 (389)
T ss_dssp TTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEET--------------------TTCCSHHHHHHHHHHHT-
T ss_pred CCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeC--------------------ccCCCHHHHHHHHHHHh-
Confidence 3456 899999999999999999999887653 2222221 11111112222222111
Q ss_pred hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc----CCCeE
Q 040099 1113 ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKILLLDEATSALDIESERVVQDALDQVM----VDRTT 1186 (1236)
Q Consensus 1113 ~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~----~~~Tv 1186 (1236)
|. ..... ..+.++.... +...+ ..+|.+|+|||+... |......+.+.+.+.. .+.++
T Consensus 99 ----------~~--~~~~~--~~~~~~~~~~-l~~~l~~~~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~i 162 (389)
T 1fnn_A 99 ----------NI--PFPRR--GLSRDEFLAL-LVEHLRERDLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIAL 162 (389)
T ss_dssp ----------TC--CCCSS--CCCHHHHHHH-HHHHHHHTTCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEE
T ss_pred ----------Cc--cCCCC--CCCHHHHHHH-HHHHHhhcCCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEE
Confidence 11 11111 1233332211 11111 245889999999987 8777777766665433 36688
Q ss_pred EEEecCchhh
Q 040099 1187 LVVAHRLSTI 1196 (1236)
Q Consensus 1187 I~IaHRl~ti 1196 (1236)
|+++|+.+..
T Consensus 163 I~~~~~~~~~ 172 (389)
T 1fnn_A 163 VIVGHNDAVL 172 (389)
T ss_dssp EEEESSTHHH
T ss_pred EEEECCchHH
Confidence 8899988543
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.73 E-value=6.6e-06 Score=84.97 Aligned_cols=55 Identities=25% Similarity=0.239 Sum_probs=42.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc-ceEEEcCCCC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-QMGVVSQEPV 1097 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~-~i~~V~Qdp~ 1097 (1236)
.+|+.++|+|++||||||+++.|.+.+ |.+.+|+.++.. ...+++ .+++.+|++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~~--~~~~~~~~~g~~~~~~~ 61 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLHP--RRNIEKMASGEPLNDDD 61 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGCC--HHHHHHHHTTCCCCHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccccc--hHHHHHhhcCcCCCccc
Confidence 578999999999999999999999876 889999877653 222333 4677777643
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=97.72 E-value=2.2e-06 Score=104.31 Aligned_cols=45 Identities=33% Similarity=0.378 Sum_probs=40.3
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEE-ECCeecc
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HIT-LDGVEIQ 1078 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~-idG~di~ 1078 (1236)
..+++|+.++|+|+||||||||+++|.+.+.|++| +|. +||.++.
T Consensus 364 ~~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~~ 410 (552)
T 3cr8_A 364 PRERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIVR 410 (552)
T ss_dssp CGGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHHH
T ss_pred cccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHHH
Confidence 35889999999999999999999999999999887 784 9997764
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=97.71 E-value=6.1e-06 Score=85.21 Aligned_cols=38 Identities=37% Similarity=0.469 Sum_probs=33.6
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
++|++++|+|++||||||+++.|.+.+ |.+.+++.++.
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~~ 43 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFLH 43 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGGC
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCcccc
Confidence 579999999999999999999999875 88999886654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.70 E-value=7.4e-05 Score=85.12 Aligned_cols=107 Identities=12% Similarity=0.148 Sum_probs=67.4
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
-|+.+.--++||+.+.|.||+|+||||++.-+..-.....+.+. |++=| .+-.+-.
T Consensus 35 ~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl-------------------~fSlE-----ms~~ql~ 90 (338)
T 4a1f_A 35 QLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVA-------------------VFSLE-----MSAEQLA 90 (338)
T ss_dssp HHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEE-------------------EEESS-----SCHHHHH
T ss_pred HHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEE-------------------EEeCC-----CCHHHHH
Confidence 57777778999999999999999999999887765433333333 33222 1211111
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCC
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALD 1166 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD 1166 (1236)
.++.... ...+ ++... .| .||.+++||++.|...+.++++.|.|+|+.++|
T Consensus 91 ~Rlls~~---~~v~--~~~l~--~g-~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 91 LRALSDL---TSIN--MHDLE--SG-RLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp HHHHHHH---HCCC--HHHHH--HT-CCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred HHHHHHh---hCCC--HHHHh--cC-CCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 1111100 0000 00011 12 589999999999999999999999999876554
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=97.67 E-value=3.4e-05 Score=87.94 Aligned_cols=123 Identities=11% Similarity=0.169 Sum_probs=77.6
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHH
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDN 480 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~n 480 (1236)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.......+ .+.|++=|
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~-------------------~Vl~fSlE----------- 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDR-------------------GVAVFSLE----------- 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC-------------------EEEEEESS-----------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCC-------------------eEEEEeCC-----------
Confidence 357777667999999999999999999999887654432222 23443322
Q ss_pred HhcCCCCCCHHHHHHHH--HHhcc--HHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 481 IAYGKTHATKEEIQAAA--EAANA--SHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 481 i~~g~~~~~~~~~~~~~--~~~~~--~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
.+.+++..-+ ..+++ +... . ..||+++.||++.|...+.+++++|.|+|...+|
T Consensus 84 -------ms~~ql~~Rlls~~~~v~~~~l~-----------~---g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~- 141 (338)
T 4a1f_A 84 -------MSAEQLALRALSDLTSINMHDLE-----------S---GRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE- 141 (338)
T ss_dssp -------SCHHHHHHHHHHHHHCCCHHHHH-----------H---TCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH-
T ss_pred -------CCHHHHHHHHHHHhhCCCHHHHh-----------c---CCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH-
Confidence 2334433221 11111 1111 0 2699999999999999999999999999865433
Q ss_pred HHHHHHHHHHHHHc--c-CceEEEEe
Q 040099 557 ESGRMVQEALDRVM--I-NRTTVIVS 579 (1236)
Q Consensus 557 ~~~~~i~~~l~~~~--~-~~t~i~it 579 (1236)
.|...++++. . +..+|+|-
T Consensus 142 ----~i~~~ir~l~~~~gg~~lIVID 163 (338)
T 4a1f_A 142 ----QIRLQLRKLKSQHKELGIAFID 163 (338)
T ss_dssp ----HHHHHHHHHHHHCTTEEEEEEE
T ss_pred ----HHHHHHHHHHHhcCCCCEEEEe
Confidence 3333333332 2 45666663
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.67 E-value=1.2e-05 Score=85.09 Aligned_cols=49 Identities=14% Similarity=0.120 Sum_probs=42.2
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVK 1083 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~ 1083 (1236)
..++|+.++|+|+|||||||+++.|.+.+++.+|.|.+.+.|....+..
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~~~~ 66 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIVERA 66 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCCCHH
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccCCHH
Confidence 3578899999999999999999999999998899999887776555543
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=97.63 E-value=5.5e-05 Score=88.97 Aligned_cols=39 Identities=31% Similarity=0.398 Sum_probs=34.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
++.+++++||+||||||++..|++.+.+..++|.+-+.|
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 578999999999999999999999998888888775544
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=97.59 E-value=1.6e-05 Score=84.20 Aligned_cols=46 Identities=17% Similarity=0.133 Sum_probs=39.5
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEF 454 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~ 454 (1236)
..++|++++|+|+|||||||+++.|.+.+++..|.|.+.+.|....
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~~~~ 63 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDDHIV 63 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGCC
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCcccC
Confidence 3578999999999999999999999999998899998876665433
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00025 Score=82.81 Aligned_cols=45 Identities=18% Similarity=0.086 Sum_probs=33.7
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc----CceEEEEecCchhH
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMI----NRTTVIVSHRLSLI 585 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~----~~t~i~itH~~~~~ 585 (1236)
.+|.++++||+... |......+.+.+.+... +.++|+++|+.+..
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~ 172 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVL 172 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHH
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHH
Confidence 45889999999887 88777777777655432 56788889988543
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=2.9e-05 Score=88.76 Aligned_cols=128 Identities=20% Similarity=0.260 Sum_probs=73.1
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhccc-CC------CCcEEEECCeecccCChHHHhcc---eEEEcCCCCCChhhHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFY-DP------SSGHITLDGVEIQKLQVKWLRQQ---MGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-~~------~~G~I~idG~di~~i~~~~lR~~---i~~V~Qdp~LF~gTIr 1104 (1236)
-+++|+.+.|.||+|||||||+..+..-. .+ ..+.++|+.... ++.+.+++. +++-+ ..+.
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~--~~~~~l~~~~~~~g~~~-------~~~~ 173 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGT--FRWERIENMAKALGLDI-------DNVM 173 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC--CCHHHHHHHHHHTTCCH-------HHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHhCCCH-------HHHh
Confidence 68999999999999999999998877543 33 233455554321 223322221 11100 0011
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHc---cCCCEEEEecCCCCCCHH-------HH--H
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIV---KEPKILLLDEATSALDIE-------SE--R 1171 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALl---r~p~ILlLDEaTSaLD~~-------te--~ 1171 (1236)
+|+ .+.. ..++ -+.+.+..+++++ .+|+++|+|+.|+-.+.+ ++ .
T Consensus 174 ~~l-------------------~~~~---~~~~~~~~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~ 231 (324)
T 2z43_A 174 NNI-------------------YYIR---AINTDHQIAIVDDLQELVSKDPSIKLIVVDSVTSHFRAEYPGRENLAVRQQ 231 (324)
T ss_dssp HTE-------------------EEEE---CCSHHHHHHHHHHHHHHHHHCTTEEEEEETTTTHHHHHHSCTTTSHHHHHH
T ss_pred ccE-------------------EEEe---CCCHHHHHHHHHHHHHHHHhccCCCEEEEeCcHHHhhhhhcCcccHHHHHH
Confidence 110 0000 1122 2456788888888 579999999999876432 11 2
Q ss_pred HHHHHH---HHHc--CCCeEEEEecCc
Q 040099 1172 VVQDAL---DQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1172 ~I~~~L---~~~~--~~~TvI~IaHRl 1193 (1236)
.+.+.+ ++.. .++|||++.|-.
T Consensus 232 ~~~~~l~~L~~la~~~~~~Vi~~nq~~ 258 (324)
T 2z43_A 232 KLNKHLHQLTRLAEVYDIAVIITNQVM 258 (324)
T ss_dssp HHHHHHHHHHHHHHHHTCEEEEEEEC-
T ss_pred HHHHHHHHHHHHHHHhCCEEEEEccee
Confidence 344433 3322 278999998854
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.51 E-value=1.9e-05 Score=89.44 Aligned_cols=50 Identities=16% Similarity=0.293 Sum_probs=39.7
Q ss_pred ccccceeEEecCCC------EEEEEcCCCCChHHHHHHHhcccC--CCCcEEEECCee
Q 040099 1027 EVFRDLCLTIPPGK------TIALVGESGSGKSTVISLLQRFYD--PSSGHITLDGVE 1076 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge------~vaIVG~SGSGKSTL~~lL~r~~~--~~~G~I~idG~d 1076 (1236)
+.|++++..+.+++ .+||+|||||||||++++|.++++ |.+|.+.+-+.|
T Consensus 74 ~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~~~~~~~~v~~i~~D 131 (321)
T 3tqc_A 74 QTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLSRWPDHPNVEVITTD 131 (321)
T ss_dssp HHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHTTSTTCCCEEEEEGG
T ss_pred HHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhcccCCCCeEEEEeec
Confidence 46777787777776 899999999999999999999987 456665443333
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.45 E-value=6.8e-05 Score=86.31 Aligned_cols=28 Identities=18% Similarity=0.131 Sum_probs=25.7
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 5889999999999999999999988774
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=0.00013 Score=79.18 Aligned_cols=132 Identities=16% Similarity=0.157 Sum_probs=73.0
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCCh-hhHHHHHHHHhhh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFS-DTIRANIAEMANA 1113 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNL~~~a~~ 1113 (1236)
.+.+|+.+.++|||||||||++.++.--.....|. ...+.++.|.|.... -++.+|+.+..+.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34678999999999999999887653211111111 234677888886543 3677777533221
Q ss_pred chHHHhhhhchhhhhcC----CCC---CCChhHHHHHHHHHHHccCCCEEEEecCCC-CCCHHHHHHHHHHHHHHcCCCe
Q 040099 1114 NGFISGLQEGYDTLVGE----RGV---QLSGGQKQRVAIARAIVKEPKILLLDEATS-ALDIESERVVQDALDQVMVDRT 1185 (1236)
Q Consensus 1114 ~~~i~~lp~Gldt~vge----~G~---~LSGGQrQRlaLARALlr~p~ILlLDEaTS-aLD~~te~~I~~~L~~~~~~~T 1185 (1236)
. . ...-|+...... .+. --+.|.-.+. .+.-+++-+++|+||+-. ++|........+.+.....++.
T Consensus 136 ~-~--~~~~g~~~~~~~~~~~~~~~Ivv~Tpg~l~~~--l~~~l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~~~~~~~ 210 (235)
T 3llm_A 136 E-P--GKSCGYSVRFESILPRPHASIMFCTVGVLLRK--LEAGIRGISHVIVDEIHERDINTDFLLVVLRDVVQAYPEVR 210 (235)
T ss_dssp C-T--TSSEEEEETTEEECCCSSSEEEEEEHHHHHHH--HHHCCTTCCEEEECCTTSCCHHHHHHHHHHHHHHHHCTTSE
T ss_pred c-c--CceEEEeechhhccCCCCCeEEEECHHHHHHH--HHhhhcCCcEEEEECCccCCcchHHHHHHHHHHHhhCCCCe
Confidence 1 0 001122111110 100 0234555444 344689999999999976 5777666444444444444443
Q ss_pred EE
Q 040099 1186 TL 1187 (1236)
Q Consensus 1186 vI 1187 (1236)
+|
T Consensus 211 ~i 212 (235)
T 3llm_A 211 IV 212 (235)
T ss_dssp EE
T ss_pred EE
Confidence 33
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.42 E-value=2.9e-05 Score=89.46 Aligned_cols=47 Identities=23% Similarity=0.256 Sum_probs=40.2
Q ss_pred ccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1027 EVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+++.++..|+.|+. +.+.||+|+||||+++.+.+...+..+.+.+.
T Consensus 32 ~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~ 80 (340)
T 1sxj_C 32 EVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMVL 80 (340)
T ss_dssp HHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEE
T ss_pred HHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceEE
Confidence 488999999999998 99999999999999999999887666544333
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.35 E-value=2.2e-05 Score=81.31 Aligned_cols=42 Identities=40% Similarity=0.520 Sum_probs=35.1
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeeccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEIQK 1079 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di~~ 1079 (1236)
++|+.++|+|++||||||+.+.|.+.+.+ .| .|.+||..++.
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~~~ 46 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNIRQ 46 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHHTT
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHHHH
Confidence 47999999999999999999999998866 57 77778766643
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00039 Score=78.18 Aligned_cols=32 Identities=31% Similarity=0.421 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCH
Q 040099 525 SGGQKQRVAIARAMIKDPRILLLDEATSALDS 556 (1236)
Q Consensus 525 SgGqkqRiaiARal~~~p~ililDE~ts~lD~ 556 (1236)
++++++|..+++|...+|.+|++||+.+-++.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~ 128 (297)
T 3b9p_A 97 DGEKLVRALFAVARHMQPSIIFIDEVDSLLSE 128 (297)
T ss_dssp CHHHHHHHHHHHHHHTCSEEEEEETGGGTSBC
T ss_pred hHHHHHHHHHHHHHHcCCcEEEeccHHHhccc
Confidence 36788888888888899999999999887654
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=97.31 E-value=0.00054 Score=76.98 Aligned_cols=116 Identities=21% Similarity=0.270 Sum_probs=71.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~ 1116 (1236)
.++..+.|.||+|+||||+++.+.+.+... -+.+++ .++
T Consensus 52 ~~~~~vll~Gp~GtGKT~la~~la~~~~~~--~~~i~~---------------------------------------~~l 90 (297)
T 3b9p_A 52 APAKGLLLFGPPGNGKTLLARAVATECSAT--FLNISA---------------------------------------ASL 90 (297)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHTTCE--EEEEES---------------------------------------TTT
T ss_pred CCCCeEEEECcCCCCHHHHHHHHHHHhCCC--eEEeeH---------------------------------------HHH
Confidence 467889999999999999999999855210 011111 000
Q ss_pred HHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH----------HHHHHHHHHHHcC----
Q 040099 1117 ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES----------ERVVQDALDQVMV---- 1182 (1236)
Q Consensus 1117 i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~t----------e~~I~~~L~~~~~---- 1182 (1236)
. ...+ -+++++++-.+++|...+|.+|++||+.+-++... ...+...++....
T Consensus 91 ~-------~~~~------~~~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~ 157 (297)
T 3b9p_A 91 T-------SKYV------GDGEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDG 157 (297)
T ss_dssp S-------SSSC------SCHHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC-----
T ss_pred h-------hccc------chHHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCC
Confidence 0 0001 14678888888888888999999999988765432 1123333333221
Q ss_pred -CCeEEEEecCchhh-----hhcCEEEEEe
Q 040099 1183 -DRTTLVVAHRLSTI-----KNAHLIAVVS 1206 (1236)
Q Consensus 1183 -~~TvI~IaHRl~ti-----~~aD~I~Vl~ 1206 (1236)
+..+|..|++.+.+ +.+|+++.+.
T Consensus 158 ~~v~vi~~tn~~~~l~~~l~~R~~~~i~~~ 187 (297)
T 3b9p_A 158 DRIVVLAATNRPQELDEAALRRFTKRVYVS 187 (297)
T ss_dssp -CEEEEEEESCGGGBCHHHHHHCCEEEECC
T ss_pred CcEEEEeecCChhhCCHHHHhhCCeEEEeC
Confidence 23466678886532 3577766553
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=3.1e-05 Score=80.20 Aligned_cols=40 Identities=33% Similarity=0.452 Sum_probs=33.0
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCeec
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVNL 451 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~~ 451 (1236)
++|++++|+|++||||||+++.|.+.+.+ .| .|.+|+..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998866 56 666776444
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=6.6e-05 Score=79.09 Aligned_cols=58 Identities=24% Similarity=0.444 Sum_probs=40.4
Q ss_pred EEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc----cc----CCCCcEEEECCeec
Q 040099 1017 SFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR----FY----DPSSGHITLDGVEI 1077 (1236)
Q Consensus 1017 sf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r----~~----~~~~G~I~idG~di 1077 (1236)
+++||+- ..+++++||+.+++ +++++|++|+|||||++.+.+ .| .++.+.+.++|.++
T Consensus 6 ~~~~~~~--~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~~~~~~~~~t~~~~~~~~~~~~~~l 71 (198)
T 1f6b_A 6 DWIYSGF--SSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKDDRLGQHVPTLHPTSEELTIAGMTF 71 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSCC------CCCCCSCEEEEETTEEE
T ss_pred HHHHHHH--HHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhcCCCCccCCCCCceeEEEEECCEEE
Confidence 4567653 35899999998887 689999999999999999986 22 33457777777554
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00035 Score=80.29 Aligned_cols=131 Identities=15% Similarity=0.171 Sum_probs=71.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhccc-CC------CCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFY-DP------SSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI 1107 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~-~~------~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL 1107 (1236)
-+++|+.+.|.||+|||||||+..+..-. .| ..+.++||.... ++.+.+++...-+..++
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~--~~~~~l~~~~~~~g~~~----------- 184 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENT--FRPDRLRDIADRFNVDH----------- 184 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSC--CCHHHHHHHHHHTTCCH-----------
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCC--CCHHHHHHHHHHcCCCH-----------
Confidence 68999999999999999999998887642 22 233455654321 22232222110000000
Q ss_pred HHHhhhchHHHhhhhchhhhhcCCCCCCCh-hHHHHHHHHHHHc----cCCCEEEEecCCCCCCHH-------HH-----
Q 040099 1108 AEMANANGFISGLQEGYDTLVGERGVQLSG-GQKQRVAIARAIV----KEPKILLLDEATSALDIE-------SE----- 1170 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt~vge~G~~LSG-GQrQRlaLARALl----r~p~ILlLDEaTSaLD~~-------te----- 1170 (1236)
.++++.+ + +-. ..++ -+.+.+..++.++ .+++++|+|+.|+-.+.+ .+
T Consensus 185 ------~~~l~~l---~---~~~---~~~~e~~~~ll~~l~~~i~~~~~~~~lvVIDsl~~l~~~~~~~~g~~~~r~~~l 249 (343)
T 1v5w_A 185 ------DAVLDNV---L---YAR---AYTSEHQMELLDYVAAKFHEEAGIFKLLIIDSIMALFRVDFSGRGELAERQQKL 249 (343)
T ss_dssp ------HHHHHTE---E---EEE---CCSTTHHHHHHHHHHHHHHHSCSSEEEEEEETSGGGHHHHCCGGGCHHHHHHHH
T ss_pred ------HHHHhce---e---Eee---cCCHHHHHHHHHHHHHHHHhcCCCccEEEEechHHHHHHHhcccccHHHHHHHH
Confidence 0011110 0 000 0122 2345666677776 569999999999877543 11
Q ss_pred HHHHHHHHHHc--CCCeEEEEecCc
Q 040099 1171 RVVQDALDQVM--VDRTTLVVAHRL 1193 (1236)
Q Consensus 1171 ~~I~~~L~~~~--~~~TvI~IaHRl 1193 (1236)
..+...|++.. .++|||++.|-.
T Consensus 250 ~~~l~~L~~la~~~~~~Vi~~nq~~ 274 (343)
T 1v5w_A 250 AQMLSRLQKISEEYNVAVFVTNQMT 274 (343)
T ss_dssp HHHHHHHHHHHHHHTCEEEEEECC-
T ss_pred HHHHHHHHHHHHHhCCEEEEEeece
Confidence 22233333332 378999998843
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.24 E-value=0.0003 Score=83.77 Aligned_cols=43 Identities=21% Similarity=0.279 Sum_probs=33.8
Q ss_pred CCCCEEEEeCcCCCCCH-HHHHHHHHHHHHHc-cCceEEEEecCc
Q 040099 540 KDPRILLLDEATSALDS-ESGRMVQEALDRVM-INRTTVIVSHRL 582 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~-~~~~~i~~~l~~~~-~~~t~i~itH~~ 582 (1236)
.+|++|++||+..-.+. .+...+...+..+. .++.+|++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 38999999999887764 56777888887754 467888889974
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.23 E-value=5.3e-05 Score=87.21 Aligned_cols=43 Identities=16% Similarity=0.329 Sum_probs=38.2
Q ss_pred CccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 400 EQILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
..+++.++..++.|+. +.+.||+|+||||+++.+++...+..+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~ 75 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNY 75 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCc
Confidence 3588999999999998 999999999999999999998766554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=71.80 Aligned_cols=118 Identities=20% Similarity=0.210 Sum_probs=59.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
+|+|||++|+|||||++.|+|-..+.+|..... ... + .....+.-+ + .... +
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~~~~~-~t~---~-----~~~~~~~~~-----~-------~~i~---l---- 82 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGTAAKS-ITK---K-----CEKRSSSWK-----E-------TELV---V---- 82 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--------CC---S-----CEEEEEEET-----T-------EEEE---E----
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCCCCCc-eee---e-----EEEEEEEeC-----C-------ceEE---E----
Confidence 689999999999999999998766555432100 000 0 000000000 0 0000 0
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHHH---ccCCCEEEEecCCCCCCHHHHHHHHHHHHHH---cCCCeEEEEec
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAI---VKEPKILLLDEATSALDIESERVVQDALDQV---MVDRTTLVVAH 1191 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARAL---lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~---~~~~TvI~IaH 1191 (1236)
+||+ |-.....|+.+.|+ .+.+.+ .++|+++|+..+.+.++......+...++.. ....++|+++|
T Consensus 83 ---iDTp-G~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~v~d~~~~~~~~~~~l~~~~~~~~~~~~~~~iiv~nK 154 (239)
T 3lxx_A 83 ---VDTP-GIFDTEVPNAETSK-EIIRCILLTSPGPHALLLVVPLGRYTEEEHKATEKILKMFGERARSFMILIFTR 154 (239)
T ss_dssp ---EECC-SCC-----CHHHHH-HHHHHHHHTTTCCSEEEEEEETTCCSSHHHHHHHHHHHHHHHHHGGGEEEEEEC
T ss_pred ---EECC-CccCCCCCHHHHHH-HHHHHHHhcCCCCcEEEEEeeCCCCCHHHHHHHHHHHHHhhhhccceEEEEEeC
Confidence 1111 11111234444333 334433 4578999999988888887666665554322 11258888888
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.00011 Score=87.61 Aligned_cols=66 Identities=9% Similarity=0.251 Sum_probs=43.9
Q ss_pred CCCEEEEecCCCCCCH-HHHHHHHHHHHHHc-CCCeEEEEecCch-hhhh-cCEEEE-EeCCEEEEecChh
Q 040099 1152 EPKILLLDEATSALDI-ESERVVQDALDQVM-VDRTTLVVAHRLS-TIKN-AHLIAV-VSQGMIVEKGSHE 1217 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~-~te~~I~~~L~~~~-~~~TvI~IaHRl~-ti~~-aD~I~V-l~~G~Ive~Gt~~ 1217 (1236)
+|++|++||+..-.+. .+...+...+.... .++++|++||+.. .+.. .+++.- ++.|.+++.+.|+
T Consensus 194 ~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~~~~l~~l~~~L~sR~~~g~~i~l~~p~ 264 (440)
T 2z4s_A 194 KVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMGLVAKLEPPD 264 (440)
T ss_dssp TCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSCGGGCSSCCHHHHHHHHSSBCCBCCCCC
T ss_pred CCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCCHHHHHHHHHHHHhhccCCeEEEeCCCC
Confidence 8999999999887764 66777777877654 4678888999843 2221 122222 4567777766554
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0014 Score=71.14 Aligned_cols=29 Identities=31% Similarity=0.292 Sum_probs=24.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcE
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGE 443 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~ 443 (1236)
.++|+|++|+|||||++.|+|...+.+|.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 68999999999999999999977666553
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.20 E-value=0.00017 Score=86.11 Aligned_cols=68 Identities=24% Similarity=0.345 Sum_probs=43.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc------------CCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChh-hHHHH
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY------------DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRAN 1106 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~------------~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~g-TIreN 1106 (1236)
-+++|||++|+|||||++.|.|.. ++..|.+.++|.++.-++..-+|+...+.+|....|.. +..++
T Consensus 181 ~kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~ 260 (439)
T 1mky_A 181 IKVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDS 260 (439)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHH
Confidence 479999999999999999999874 36789999999987766666666666777676665542 33444
Q ss_pred H
Q 040099 1107 I 1107 (1236)
Q Consensus 1107 L 1107 (1236)
+
T Consensus 261 i 261 (439)
T 1mky_A 261 I 261 (439)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.18 E-value=0.0013 Score=72.13 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=31.2
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
.++++++.+++| +.|+||+|+||||++++|.+.+... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 355666666666 9999999999999999999987532 366665544
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=97.18 E-value=6.9e-05 Score=91.72 Aligned_cols=59 Identities=20% Similarity=0.309 Sum_probs=47.7
Q ss_pred EEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe
Q 040099 387 LKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV 449 (1236)
Q Consensus 387 ~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 449 (1236)
++++...|. +..+++++++++ +|+.++|+||||+|||||++.|.+...+..|+|.++|.
T Consensus 86 ~~~vk~~i~---~~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 86 LEKVKERIL---EYLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp CHHHHHHHH---HHHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHHHH---HHHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 344444452 234788888888 89999999999999999999999999999898887763
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.15 E-value=6.5e-05 Score=86.42 Aligned_cols=52 Identities=13% Similarity=0.201 Sum_probs=46.5
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQ 1078 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~ 1078 (1236)
.+++++++++++|.+++|+|++|+||||+++.|.+.+.+.+|++.+-+.|..
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~~ 95 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDPS 95 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecCC
Confidence 4789999999999999999999999999999999999888888887666654
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00027 Score=79.76 Aligned_cols=139 Identities=17% Similarity=0.196 Sum_probs=73.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC-CeecccCChHHHhcceEEEcCCCC--CChhhH------HHHH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD-GVEIQKLQVKWLRQQMGVVSQEPV--LFSDTI------RANI 1107 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id-G~di~~i~~~~lR~~i~~V~Qdp~--LF~gTI------reNL 1107 (1236)
.++.+|+|||++|+|||||++.|.+.- +.+. +.+ ....++..++++|+.. .|-+|- +..+
T Consensus 6 ~r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~-----~tTr~~~~gi~~~~~~~i~~iDTpG~~~~~~~~l 74 (301)
T 1ega_A 6 SYCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKA-----QTTRHRIVGIHTEGAYQAIYVDTPGLHMEEKRAI 74 (301)
T ss_dssp CEEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCS-----SCCSSCEEEEEEETTEEEEEESSSSCCHHHHHHH
T ss_pred ccCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCC-----CcceeeEEEEEEECCeeEEEEECcCCCccchhhH
Confidence 344589999999999999999999852 2221 111 1112344567776642 121221 1111
Q ss_pred HHHhhhchHHHhhhhchhh---hhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCHHH-HHHHHHHHHHHc
Q 040099 1108 AEMANANGFISGLQEGYDT---LVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDIES-ERVVQDALDQVM 1181 (1236)
Q Consensus 1108 ~~~a~~~~~i~~lp~Gldt---~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~~t-e~~I~~~L~~~~ 1181 (1236)
.+.. .......+. ..|. .+.. .. +|+|++ .+++++. ..|.||++ +.+|... ...+.+.+.++.
T Consensus 75 ~~~~-~~~~~~~l~-~~D~vl~Vvd~-~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~ 143 (301)
T 1ega_A 75 NRLM-NKAASSSIG-DVELVIFVVEG-TR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLA 143 (301)
T ss_dssp HHHH-TCCTTSCCC-CEEEEEEEEET-TC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHH
T ss_pred HHHH-HHHHHHHHh-cCCEEEEEEeC-CC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHH
Confidence 1000 000001111 1111 1222 22 899987 4566665 67999998 6888876 455666666554
Q ss_pred C--C--CeEEEEecCchhhh
Q 040099 1182 V--D--RTTLVVAHRLSTIK 1197 (1236)
Q Consensus 1182 ~--~--~TvI~IaHRl~ti~ 1197 (1236)
+ + .++.+.||.-.-+.
T Consensus 144 ~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 144 SQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp TTSCCSEEEECCTTTTTTHH
T ss_pred HhcCcCceEEEECCCCCCHH
Confidence 3 2 24445577766554
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00018 Score=83.82 Aligned_cols=30 Identities=20% Similarity=0.362 Sum_probs=26.4
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
+++..+.|.||+|+|||||++.+.+...+.
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~ 72 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKK 72 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 567889999999999999999999887554
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.00025 Score=80.52 Aligned_cols=107 Identities=12% Similarity=0.116 Sum_probs=67.6
Q ss_pred CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHH
Q 040099 400 EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRD 479 (1236)
Q Consensus 400 ~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ 479 (1236)
.+.|+++.--+++|+.+.|.|++|+|||||+.-++.-.-. .| ..+.|++=|
T Consensus 55 ~~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g------------------~~vl~~slE---------- 105 (315)
T 3bh0_A 55 FTELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND------------------DVVNLHSLE---------- 105 (315)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT------------------CEEEEEESS----------
T ss_pred hHHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC------------------CeEEEEECC----------
Confidence 3468887767999999999999999999999877642211 11 134444322
Q ss_pred HHhcCCCCCCHHHHHHHHHH--hccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCC
Q 040099 480 NIAYGKTHATKEEIQAAAEA--ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSA 553 (1236)
Q Consensus 480 ni~~g~~~~~~~~~~~~~~~--~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~ 553 (1236)
.+.+++.+-+.. .++. +.++-.|. ..||++++||++.|...+.++++++.|+|...
T Consensus 106 --------~s~~~l~~R~~~~~~~i~--~~~l~~~~--------~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~ 163 (315)
T 3bh0_A 106 --------MGKKENIKRLIVTAGSIN--AQKIKAAR--------RDFASEDWGKLSMAIGEISNSNINIFDKAGQS 163 (315)
T ss_dssp --------SCHHHHHHHHHHHHTTCC--HHHHHSCH--------HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB
T ss_pred --------CCHHHHHHHHHHHHcCCC--HHHHhcCC--------CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC
Confidence 233333322211 1111 00010110 12899999999999999999999999998644
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.12 E-value=0.00028 Score=84.12 Aligned_cols=69 Identities=28% Similarity=0.294 Sum_probs=43.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC------------CCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCch-hHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD------------PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNI 481 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~------------~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~-ti~~ni 481 (1236)
.++|+|++|+|||||++.|+|... |.+|.+.++|.++.-++....++..++.+|....|.. +..+++
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt~G~~~~~~~~~~~~e~~~~~~~~~~i 261 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDTAGLRRKSRVEPRTVEKYSNYRVVDSI 261 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSCSCC-----------CCSCCHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEECCCCccccccchhhHHHHHHHHHHHHH
Confidence 799999999999999999999853 7789999999877655555555556666666555532 444555
Q ss_pred hc
Q 040099 482 AY 483 (1236)
Q Consensus 482 ~~ 483 (1236)
..
T Consensus 262 ~~ 263 (439)
T 1mky_A 262 EK 263 (439)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00026 Score=79.83 Aligned_cols=142 Identities=15% Similarity=0.125 Sum_probs=74.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE-CCeecCCCCHHHHhcceEEEccCCC--CCchhHHHHHhcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI-DGVNLKEFQLKWIREKIGLVSQEPV--LLSSSIRDNIAYGKTHA 488 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~-~g~~~~~~~~~~~r~~i~~v~Q~~~--l~~~ti~~ni~~g~~~~ 488 (1236)
++.+++|+|++|+|||||++.|.|.- +.+ .+.+- ...++..+++.++.. .|-+| |..
T Consensus 7 r~~~VaIvG~~nvGKSTLln~L~g~~------~~i~s~~~~-----tTr~~~~gi~~~~~~~i~~iDT---------pG~ 66 (301)
T 1ega_A 7 YCGFIAIVGRPNVGKSTLLNKLLGQK------ISITSRKAQ-----TTRHRIVGIHTEGAYQAIYVDT---------PGL 66 (301)
T ss_dssp EEEEEEEECSSSSSHHHHHHHHHTCS------EEECCCCSS-----CCSSCEEEEEEETTEEEEEESS---------SSC
T ss_pred cCCEEEEECCCCCCHHHHHHHHHCCC------ccccCCCCC-----cceeeEEEEEEECCeeEEEEEC---------cCC
Confidence 44589999999999999999999863 211 11110 111334677877643 12222 111
Q ss_pred CHHHHHHHHHHhccHHHHHhCCC---Ccccc--ccCCCCCCChHHHHHHHHHHHhc--CCCCEEEEeCcCCCCCHHH-HH
Q 040099 489 TKEEIQAAAEAANASHFIKNLPQ---GLDTN--VGEHGIQLSGGQKQRVAIARAMI--KDPRILLLDEATSALDSES-GR 560 (1236)
Q Consensus 489 ~~~~~~~~~~~~~~~~~i~~l~~---g~~t~--~g~~g~~LSgGqkqRiaiARal~--~~p~ililDE~ts~lD~~~-~~ 560 (1236)
.. +....... ++...... ..|-. +-+... +|+|++ .+++++. ..|.++++ +-+|... ..
T Consensus 67 ~~-~~~~~l~~----~~~~~~~~~l~~~D~vl~Vvd~~~-~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~ 133 (301)
T 1ega_A 67 HM-EEKRAINR----LMNKAASSSIGDVELVIFVVEGTR-WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKA 133 (301)
T ss_dssp CH-HHHHHHHH----HHTCCTTSCCCCEEEEEEEEETTC-CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHH
T ss_pred Cc-cchhhHHH----HHHHHHHHHHhcCCEEEEEEeCCC-CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHH
Confidence 10 00111100 11111111 12221 112222 999986 5566665 68889998 7888765 55
Q ss_pred HHHHHHHHHcc--C--ceEEEEecCchhHh
Q 040099 561 MVQEALDRVMI--N--RTTVIVSHRLSLIR 586 (1236)
Q Consensus 561 ~i~~~l~~~~~--~--~t~i~itH~~~~~~ 586 (1236)
.+.+.+.++.+ + ..+.+.+|.-.-+.
T Consensus 134 ~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~ 163 (301)
T 1ega_A 134 DLLPHLQFLASQMNFLDIVPISAETGLNVD 163 (301)
T ss_dssp HHHHHHHHHHTTSCCSEEEECCTTTTTTHH
T ss_pred HHHHHHHHHHHhcCcCceEEEECCCCCCHH
Confidence 56666666543 2 24555666654443
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.08 E-value=0.00012 Score=77.71 Aligned_cols=53 Identities=19% Similarity=0.229 Sum_probs=37.3
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCC-CCcEE----------EECCeecccCChHHHhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDP-SSGHI----------TLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~-~~G~I----------~idG~di~~i~~~~lR~ 1087 (1236)
+..+|..++|+|||||||||+.+.|...++. ..+.+ .+||.|..-++.+.+++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~~~~~~~~~~ttR~~~~~e~~g~~~~~~~~~~~~~ 71 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFPSRFRFSISCTTRNKREKETNGVDYYFVDKDDFER 71 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCTTTEEECCEEECSCCCTTCCBTTTEEECCHHHHHH
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCccceeeeeeecCCCCCCCCCCCcceeeCCHHHHHH
Confidence 4578999999999999999999999887742 12222 24566665566666554
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.06 E-value=8.7e-05 Score=85.35 Aligned_cols=50 Identities=24% Similarity=0.290 Sum_probs=44.1
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCee
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVN 450 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~ 450 (1236)
.+++++++++++|.+++|+|++|+|||||++.|++.+.+..|++.+-+.|
T Consensus 44 ~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d 93 (341)
T 2p67_A 44 QLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVD 93 (341)
T ss_dssp HHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred HHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeec
Confidence 47899999999999999999999999999999999998888877664443
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.03 E-value=0.00067 Score=73.49 Aligned_cols=137 Identities=15% Similarity=0.209 Sum_probs=72.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCc-hhHHHHHhcCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLS-SSIRDNIAYGKTH 487 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~-~ti~~ni~~g~~~ 487 (1236)
.+.+|+.++++|||||||||++.++........|. ...++++.+.|.... .++.+|+......
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~~----------------~~~~~~l~~~p~~~la~q~~~~~~~~~~~ 135 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQNDR----------------AAECNIVVTQPRRISAVSVAERVAFERGE 135 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTTC----------------GGGCEEEEEESSHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcCC----------------CCceEEEEeccchHHHHHHHHHHHHHhcc
Confidence 34579999999999999999887764322111111 134677777776443 3677777532111
Q ss_pred CCHHHHHHHHHHhccHHHHHhCCCCccccccCCC---CCCChHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHH
Q 040099 488 ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHG---IQLSGGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQ 563 (1236)
Q Consensus 488 ~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g---~~LSgGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~ 563 (1236)
.. ...++.. ...+....... .-.+.|.-.+.. +.-+++-+++|+||+=. ++|........
T Consensus 136 ~~-------~~~~g~~-------~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~~~l 199 (235)
T 3llm_A 136 EP-------GKSCGYS-------VRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLLVVL 199 (235)
T ss_dssp CT-------TSSEEEE-------ETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHHHHH
T ss_pred cc-------CceEEEe-------echhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHHHHH
Confidence 00 0000000 00011111000 112456655553 44689999999999976 57776654444
Q ss_pred HHHHHHccC-ceEEE
Q 040099 564 EALDRVMIN-RTTVI 577 (1236)
Q Consensus 564 ~~l~~~~~~-~t~i~ 577 (1236)
+.+.....+ +++++
T Consensus 200 ~~i~~~~~~~~~il~ 214 (235)
T 3llm_A 200 RDVVQAYPEVRIVLM 214 (235)
T ss_dssp HHHHHHCTTSEEEEE
T ss_pred HHHHhhCCCCeEEEE
Confidence 444443334 34444
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.02 E-value=0.0021 Score=70.50 Aligned_cols=44 Identities=25% Similarity=0.320 Sum_probs=28.9
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCe
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGV 449 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~ 449 (1236)
.++++++..++| +.|+||+|+||||+++.+.+.+... -+.+++.
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~ 79 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGS 79 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSC
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHH
Confidence 344555555555 8999999999999999999876422 3555543
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00031 Score=73.30 Aligned_cols=49 Identities=22% Similarity=0.474 Sum_probs=29.3
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhc----ccC----CCCcEEEECCeec
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR----FYD----PSSGHITLDGVEI 1077 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r----~~~----~~~G~I~idG~di 1077 (1236)
++++++++.++. +|+++|++|+|||||++.+.+ -|. ++.+.+.++|..+
T Consensus 13 ~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~~~~~~~~~t~~~~~~~~~~~~~~~ 69 (190)
T 1m2o_B 13 VLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKNDRLATLQPTWHPTSEELAIGNIKF 69 (190)
T ss_dssp -----------C-EEEEEESTTSSHHHHHHHHHHSCCCCCCCCCSCEEEEEEETTEEE
T ss_pred HHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhcCCCCccccCCCCCeEEEEECCEEE
Confidence 689999998887 899999999999999999987 222 3356677777544
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00012 Score=78.09 Aligned_cols=44 Identities=39% Similarity=0.354 Sum_probs=38.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc--EEEECCeec
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG--HITLDGVEI 1077 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G--~I~idG~di 1077 (1236)
+.+++|..+.|+|++||||||+.+.|.+.+.|..| .+.+||.++
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45788999999999999999999999999987888 888986544
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00024 Score=76.79 Aligned_cols=47 Identities=21% Similarity=0.190 Sum_probs=34.3
Q ss_pred ccceeEEec---CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1029 FRDLCLTIP---PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1029 L~~is~~I~---~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
|.++|+++. +|..++|.|++||||||+++.|...+.+ .+.+.....+
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~~~~p 62 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIMTREP 62 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEEECTT
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCceeecCC
Confidence 666666665 8999999999999999999999999988 7777654433
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00019 Score=75.58 Aligned_cols=42 Identities=19% Similarity=0.418 Sum_probs=31.6
Q ss_pred EEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 391 NFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 391 ~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|++ -.++++++|++.+++ .++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~--~~~~l~~~~~~~~~~-ki~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSG--FSSVLQFLGLYKKTG-KLVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp ---------CHHHHHHTCTTCCE-EEEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHH--HHHHHHHhhccCCCc-EEEEECCCCCCHHHHHHHHhc
Confidence 456764 346899999998887 589999999999999999986
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00018 Score=82.84 Aligned_cols=43 Identities=23% Similarity=0.408 Sum_probs=37.3
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
+++.+|+|+|++|||||||++.|.+.+.+.+|+|.+.+.|...
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~~ 114 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPSS 114 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC--
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCCC
Confidence 4568899999999999999999999998899999988877654
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.00 E-value=0.0016 Score=73.15 Aligned_cols=49 Identities=27% Similarity=0.368 Sum_probs=43.7
Q ss_pred cc-eeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1030 RD-LCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1030 ~~-is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
++ ++|+.+ |+.++++|++|+||||++..|.+.+.+..|++.+.+.|+..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~r 138 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVYR 138 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCSS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCCC
Confidence 45 788877 99999999999999999999999999889999998888754
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.0021 Score=73.99 Aligned_cols=149 Identities=14% Similarity=0.192 Sum_probs=81.6
Q ss_pred ccccee--EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCC-cEEEECCeecccCChHHHhcceEEEcCCCCCChhhHH
Q 040099 1028 VFRDLC--LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS-GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1028 vL~~is--~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~-G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIr 1104 (1236)
.|+.+- =-+++|+.+.|.|++|||||||+..+..-..... ..++||.... .+...
T Consensus 50 ~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s--~~~~~-------------------- 107 (356)
T 1u94_A 50 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA--LDPIY-------------------- 107 (356)
T ss_dssp HHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC--CCHHH--------------------
T ss_pred HHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCC--ccHHH--------------------
Confidence 455552 1388999999999999999999977765432222 2344554211 01100
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCC-HH------------H
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALD-IE------------S 1169 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD-~~------------t 1169 (1236)
.+..+.+ ++.+. +.. .. + ..|.+.++|.+. .+++++|+|++++-.. .+ .
T Consensus 108 ---a~~~g~~------~~~l~--i~~-~~--~--~e~~~~~~~~l~~~~~~~lVVIDsl~~l~~~~e~~~~~g~~~~~~q 171 (356)
T 1u94_A 108 ---ARKLGVD------IDNLL--CSQ-PD--T--GEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIGDSHMGLA 171 (356)
T ss_dssp ---HHHTTCC------GGGCE--EEC-CS--S--HHHHHHHHHHHHHHTCCSEEEEECGGGCCCHHHHTTC------CHH
T ss_pred ---HHHcCCC------hhhee--eeC-CC--C--HHHHHHHHHHHHhccCCCEEEEcCHHHhcchhhhccccccchhHHH
Confidence 1111110 00000 111 00 1 245567777775 5799999999998764 21 1
Q ss_pred HHHHHHHHHHHc-----CCCeEEEEecCch----------------hhh-hcCEEEEEeCCEEEEec
Q 040099 1170 ERVVQDALDQVM-----VDRTTLVVAHRLS----------------TIK-NAHLIAVVSQGMIVEKG 1214 (1236)
Q Consensus 1170 e~~I~~~L~~~~-----~~~TvI~IaHRl~----------------ti~-~aD~I~Vl~~G~Ive~G 1214 (1236)
++.+.+.++++. .++|||++.|-.. .+. .+|.++.+...++...|
T Consensus 172 ~r~~~~~l~~L~~~a~~~~~~VI~~nq~~~~~~~~fg~~~~~~gG~~l~~~advrl~l~r~~~~k~g 238 (356)
T 1u94_A 172 ARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 238 (356)
T ss_dssp HHHHHHHHHHHHHHHHHHTCEEEEEEC--------------CTTCSHHHHHCSEEEEEEEEEEEESS
T ss_pred HHHHHHHHHHHHHHHHHhCCEEEEEeccccccCcccCCCcccCCCcceeeeccEEEEEEEeeeeccC
Confidence 123444444331 3789999988532 233 47888887765544333
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=96.99 E-value=0.00021 Score=77.13 Aligned_cols=43 Identities=26% Similarity=0.308 Sum_probs=31.7
Q ss_pred ccceeEEec---CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 403 LNGFCLLIP---NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 403 l~~i~~~i~---~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
|.++|+.+. +|.+++|.|++||||||+++.|...+.+ .+.+..
T Consensus 13 ~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 13 LGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp -------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred ccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 566666665 8999999999999999999999999987 666643
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.98 E-value=0.00028 Score=72.36 Aligned_cols=33 Identities=33% Similarity=0.376 Sum_probs=28.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
.|+.++|+|++||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4788999999999999999999998754 56664
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00033 Score=81.50 Aligned_cols=31 Identities=16% Similarity=0.296 Sum_probs=26.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQA 441 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 441 (1236)
+++..+.|.||+|+|||||++.+.+...+..
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~ 73 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHKKF 73 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHHHT
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence 4678999999999999999999998775543
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=96.97 E-value=0.00012 Score=77.99 Aligned_cols=43 Identities=30% Similarity=0.273 Sum_probs=37.8
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc--EEEECCee
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG--EVLIDGVN 450 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G--~i~~~g~~ 450 (1236)
+.+++|.+++|+|++||||||+.+.|.+.+.|..| .+.++|.+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~ 64 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDN 64 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChH
Confidence 55788999999999999999999999999988888 88887543
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00032 Score=71.83 Aligned_cols=33 Identities=27% Similarity=0.317 Sum_probs=27.7
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.|++++|+||+||||||++++|.+.+.+ +.+|+
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998753 45553
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0034 Score=72.16 Aligned_cols=36 Identities=28% Similarity=0.306 Sum_probs=29.1
Q ss_pred ccccceeEE---ecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLL---IPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~---i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.|+.+ +. +++|+++.|.||+|+|||||+..++...
T Consensus 49 ~~LD~~-Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~ 87 (356)
T 1u94_A 49 LSLDIA-LGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAA 87 (356)
T ss_dssp HHHHHH-TSSSSEETTSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHH-hccCCccCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 456665 33 8899999999999999999997776543
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0012 Score=75.03 Aligned_cols=35 Identities=6% Similarity=0.088 Sum_probs=30.7
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+.|+++.--+++|+.+.|.|++|+||||++.-+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~ 90 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 90 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHH
Confidence 45888887799999999999999999999877764
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.92 E-value=0.00043 Score=70.96 Aligned_cols=27 Identities=22% Similarity=0.425 Sum_probs=23.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++|.+++|||++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 478999999999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.001 Score=75.04 Aligned_cols=31 Identities=16% Similarity=0.288 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEE
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I 1070 (1236)
..+.|+||+|+||||+++.|.+...+.+|.+
T Consensus 48 ~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 48 GSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp EEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred eEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 5789999999999999999999987766643
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00028 Score=81.35 Aligned_cols=41 Identities=24% Similarity=0.374 Sum_probs=35.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeec
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNL 451 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~ 451 (1236)
+++.+++|+|++|||||||++.|.|.+.+.+|+|.+.+.|.
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp 112 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDP 112 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecC
Confidence 45789999999999999999999999999989887766554
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=7.9e-05 Score=80.32 Aligned_cols=69 Identities=19% Similarity=0.275 Sum_probs=44.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc---ccCCCCcEE--------EECCeecccCC-hHHHhcceEEEc------CCCCCCh
Q 040099 1039 GKTIALVGESGSGKSTVISLLQR---FYDPSSGHI--------TLDGVEIQKLQ-VKWLRQQMGVVS------QEPVLFS 1100 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r---~~~~~~G~I--------~idG~di~~i~-~~~lR~~i~~V~------Qdp~LF~ 1100 (1236)
.-.++|+||+||||||+.+.|.+ +.-.+.|.+ .-.|+|..+.. ...+.+.+.+.. |+.+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 35899999999999999999984 434455655 23466665542 445556666655 3445555
Q ss_pred hhHHHHH
Q 040099 1101 DTIRANI 1107 (1236)
Q Consensus 1101 gTIreNL 1107 (1236)
..|.+||
T Consensus 89 ~~v~~~i 95 (233)
T 3r20_A 89 EDVSSEI 95 (233)
T ss_dssp EECTTGG
T ss_pred eehhhhh
Confidence 5565555
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0025 Score=75.96 Aligned_cols=168 Identities=14% Similarity=0.222 Sum_probs=94.9
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EE-EECCeecccCChHHHhcce----EEEcCCCCCCh
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HI-TLDGVEIQKLQVKWLRQQM----GVVSQEPVLFS 1100 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I-~idG~di~~i~~~~lR~~i----~~V~Qdp~LF~ 1100 (1236)
+.|+.+.--+++|+.+.|.||+|+||||++.-+..-.....| .+ +++. +.+.+.+..++ +-++.+. +-+
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl----E~~~~~l~~R~~~~~~~i~~~~-l~~ 262 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL----EMPAAQLTLRMMCSEARIDMNR-VRL 262 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES----SSCHHHHHHHHHHHHTTCCTTT-CCG
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC----CCCHHHHHHHHHHHHcCCCHHH-HhC
Confidence 357777767999999999999999999999887765533223 33 3332 35556665543 1233322 223
Q ss_pred hhHHH-HHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHc--cCCCEEEEecCCCCCCH------HH-H
Q 040099 1101 DTIRA-NIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIV--KEPKILLLDEATSALDI------ES-E 1170 (1236)
Q Consensus 1101 gTIre-NL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALl--r~p~ILlLDEaTSaLD~------~t-e 1170 (1236)
|.+.+ ...+...+.+.+...| -.+.+. ..+|..+ ..+.+|.+. .+++++++|..+.-.+. ++ .
T Consensus 263 g~l~~~~~~~~~~a~~~l~~~~----l~i~d~-~~~s~~~--l~~~~~~l~~~~~~~lIvID~l~~~~~~~~~~~~~~r~ 335 (444)
T 2q6t_A 263 GQLTDRDFSRLVDVASRLSEAP----IYIDDT-PDLTLME--VRARARRLVSQNQVGLIIIDYLQLMSGPGSGKSGENRQ 335 (444)
T ss_dssp GGCCHHHHHHHHHHHHHHHTSC----EEEECC-TTCBHHH--HHHHHHHHHHHSCCCEEEEECGGGCBCC-------CHH
T ss_pred CCCCHHHHHHHHHHHHHHhcCC----EEEECC-CCCCHHH--HHHHHHHHHHHcCCCEEEEcChhhcCCCcCCCCCCCHH
Confidence 32211 1111111111222111 112121 2456554 456777776 37999999998875543 11 1
Q ss_pred ---HHHHHHHHHHc--CCCeEEEEec--C-----------ch------hh-hhcCEEEEEe
Q 040099 1171 ---RVVQDALDQVM--VDRTTLVVAH--R-----------LS------TI-KNAHLIAVVS 1206 (1236)
Q Consensus 1171 ---~~I~~~L~~~~--~~~TvI~IaH--R-----------l~------ti-~~aD~I~Vl~ 1206 (1236)
..+.+.|+.+. .+++||+++| | ++ .+ ..||.|+.|.
T Consensus 336 ~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 336 QEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp HHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred HHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 23445555543 2789999998 1 11 23 3599999995
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00022 Score=75.56 Aligned_cols=30 Identities=23% Similarity=0.309 Sum_probs=26.4
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+..+|.+++|+|||||||||+.+.|...++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988763
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00079 Score=70.88 Aligned_cols=27 Identities=22% Similarity=0.324 Sum_probs=23.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 689999999999999999998876543
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.78 E-value=0.0026 Score=71.66 Aligned_cols=39 Identities=18% Similarity=0.397 Sum_probs=31.1
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
++.++++..+.|.||+|+|||||++.+.+... .+-+.++
T Consensus 43 ~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~ 81 (301)
T 3cf0_A 43 KFGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIK 81 (301)
T ss_dssp HHCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEEC
T ss_pred HcCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEE
Confidence 34578899999999999999999999998763 3444444
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0014 Score=74.72 Aligned_cols=29 Identities=14% Similarity=0.153 Sum_probs=24.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
++..+.|.||+|+|||||++.+.+...+.
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~~ 64 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKKR 64 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHHC
Confidence 45689999999999999999999866443
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=8.1e-05 Score=80.23 Aligned_cols=70 Identities=17% Similarity=0.242 Sum_probs=42.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEE--------ECCeecCCCC-HHHHhcceEEEc------cCCCCCc
Q 040099 413 GTIAALVGTSGSGKSTVISLIQ---RFYDPQAGEVL--------IDGVNLKEFQ-LKWIREKIGLVS------QEPVLLS 474 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~--------~~g~~~~~~~-~~~~r~~i~~v~------Q~~~l~~ 474 (1236)
.-+++|+||+||||||+.+.|. |+...+.|.++ -.|.++.+.. ...+.+.+.+.+ |..+|+.
T Consensus 9 ~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~~r~~~~~~~~~gi~~~d~~~~~~~~~~~~~~~~~~~~~~~v~l~g 88 (233)
T 3r20_A 9 SLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAMYRIATLAVLRAGADLTDPAAIEKAAADAEIGVGSDPDVDAAFLAG 88 (233)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHHHHHHHHHTCCEEECCCTTSCCEEETT
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcHHHHHHHHHHHcCCCchhhHHHHHHHHhCCEEEeecCCCcEEEECC
Confidence 4589999999999999999998 44444555552 2355444432 334555566665 3334444
Q ss_pred hhHHHHHh
Q 040099 475 SSIRDNIA 482 (1236)
Q Consensus 475 ~ti~~ni~ 482 (1236)
..|.++|+
T Consensus 89 ~~v~~~ir 96 (233)
T 3r20_A 89 EDVSSEIR 96 (233)
T ss_dssp EECTTGGG
T ss_pred eehhhhhc
Confidence 45555443
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00085 Score=67.18 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=24.8
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++.++++.+| +.+|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~ 44 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHH
Confidence 4455666655 89999999999999999986
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0019 Score=77.35 Aligned_cols=58 Identities=10% Similarity=0.087 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1137 GGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1137 GGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
+.|++....++..+++++++|+......-....+..+.+.+++ .++.+|+|.++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~d~~l~~~l~~--~~~pvilV~NK~D~~ 144 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAADEEVAKILYR--TKKPVVLAVNKLDNT 144 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHHHHHHHHHHTT--CCSCEEEEEECC---
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChHHHHHHHHHHH--cCCCEEEEEECccch
Confidence 3588888999999999998877665544344445566666654 478899999988765
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0012 Score=71.20 Aligned_cols=28 Identities=21% Similarity=0.164 Sum_probs=24.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++..+.|+||+|+||||+++.+.+....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876643
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00097 Score=69.47 Aligned_cols=34 Identities=21% Similarity=0.472 Sum_probs=20.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++++++++.++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3789999998877 789999999999999999987
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0016 Score=68.59 Aligned_cols=27 Identities=22% Similarity=0.246 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
..+.|.||+|+|||||++.+.......
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~ 81 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKR 81 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTT
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 789999999999999999998866443
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.68 E-value=0.0034 Score=69.89 Aligned_cols=28 Identities=32% Similarity=0.446 Sum_probs=24.8
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++++..+-|.||+|+||||+++.+.+.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4677789999999999999999998765
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.67 E-value=0.0027 Score=71.44 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=27.1
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.++++..+.|.||+|+|||||++.+.+..
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~ 73 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANEC 73 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHT
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHh
Confidence 456889999999999999999999999876
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.59 E-value=0.0009 Score=72.15 Aligned_cols=28 Identities=18% Similarity=0.108 Sum_probs=24.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
++..+.|.||+|+||||+++.+......
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~~ 78 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARANE 78 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 6889999999999999999999876543
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0014 Score=67.15 Aligned_cols=27 Identities=19% Similarity=0.377 Sum_probs=23.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++|..++|+|++|+|||||++.|.+..
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~ 28 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGRE 28 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 468899999999999999999999864
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=96.55 E-value=0.0045 Score=69.71 Aligned_cols=32 Identities=13% Similarity=0.139 Sum_probs=27.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
...+.|+||+|+||||+++.|.+...+..|.+
T Consensus 47 ~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~ 78 (311)
T 4fcw_A 47 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAM 78 (311)
T ss_dssp SEEEEEESCSSSSHHHHHHHHHHHHHSCGGGE
T ss_pred ceEEEEECCCCcCHHHHHHHHHHHHcCCCcce
Confidence 35789999999999999999999887766644
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0013 Score=70.50 Aligned_cols=45 Identities=18% Similarity=0.173 Sum_probs=33.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
.+|.+|++||+-. +|.+....+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 3578999999876 78887777777776544456788888887644
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0046 Score=68.80 Aligned_cols=28 Identities=21% Similarity=0.234 Sum_probs=24.7
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++++.-+.|.||+|+||||+++.+++.+
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 4567789999999999999999998865
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0002 Score=75.45 Aligned_cols=22 Identities=36% Similarity=0.593 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.++|+|++||||||+.+.|.+.
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~ 23 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKK 23 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHh
Confidence 6899999999999999999984
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0013 Score=68.34 Aligned_cols=32 Identities=22% Similarity=0.450 Sum_probs=26.8
Q ss_pred ceeEEecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1031 ~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57889999999999999999999999999876
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.00051 Score=79.08 Aligned_cols=43 Identities=12% Similarity=0.275 Sum_probs=33.6
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
+++|+++|| ...++......+.+.+.+...+..+|+++++.+.
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 668999999 6778888888888888876555567777877654
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0078 Score=59.66 Aligned_cols=32 Identities=25% Similarity=0.399 Sum_probs=25.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSG 1068 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G 1068 (1236)
+.+.-|-|.|++|+|||++++.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 44566899999999999999999887644333
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.00063 Score=78.30 Aligned_cols=43 Identities=9% Similarity=0.258 Sum_probs=33.0
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
++.|+++|| ...+++.....+.+.+.+...+..+|+++++...
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~ 175 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVTR 175 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchhh
Confidence 667999999 6788988888888888876555556777776653
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00055 Score=76.88 Aligned_cols=48 Identities=23% Similarity=0.279 Sum_probs=41.9
Q ss_pred cc-eeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 404 NG-FCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 404 ~~-i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
++ ++++.+ |++++++|++|+||||++..|++.+.+..|+|.+.+.|..
T Consensus 89 ~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~~ 137 (297)
T 1j8m_F 89 EPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADVY 137 (297)
T ss_dssp CCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCCS
T ss_pred ccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCCC
Confidence 45 777776 9999999999999999999999999998899988776654
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0019 Score=64.67 Aligned_cols=34 Identities=26% Similarity=0.519 Sum_probs=26.3
Q ss_pred cceeEEecCCCEEEEEcCCCCChHHHHHHHh-cccC
Q 040099 1030 RDLCLTIPPGKTIALVGESGSGKSTVISLLQ-RFYD 1064 (1236)
Q Consensus 1030 ~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~-r~~~ 1064 (1236)
++.++++.+| ..+|+||||||||||+.+|. .++.
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~~l~g 49 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILVGLYW 49 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHHHHHC
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHHHHcC
Confidence 4455666665 88999999999999999986 3443
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0015 Score=67.81 Aligned_cols=32 Identities=25% Similarity=0.390 Sum_probs=26.7
Q ss_pred ceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 405 GFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 405 ~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
++|++.++|..++|+|++||||||+.+.|...
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999875
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.39 E-value=0.00059 Score=70.90 Aligned_cols=43 Identities=30% Similarity=0.396 Sum_probs=35.3
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE-EECCee
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-TLDGVE 1076 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I-~idG~d 1076 (1236)
+..++|..+.|+|++||||||+.+.|.+.+.+.+|.+ .+|+-+
T Consensus 8 ~~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d~ 51 (186)
T 2yvu_A 8 KCIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGDW 51 (186)
T ss_dssp CCCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHHH
T ss_pred cccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHHH
Confidence 4456899999999999999999999999988777765 455433
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0031 Score=71.74 Aligned_cols=28 Identities=18% Similarity=0.221 Sum_probs=24.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++..+.|.||+|+|||||++.+.+....
T Consensus 36 ~~~~lll~G~~GtGKT~la~~i~~~~~~ 63 (324)
T 1l8q_A 36 LYNPIFIYGSVGTGKTHLLQAAGNEAKK 63 (324)
T ss_dssp SCSSEEEECSSSSSHHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHHHH
Confidence 3467999999999999999999987644
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0016 Score=75.47 Aligned_cols=41 Identities=24% Similarity=0.391 Sum_probs=34.8
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcc-----------cCCCCcEEEECCe
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRF-----------YDPSSGHITLDGV 1075 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~-----------~~~~~G~I~idG~ 1075 (1236)
.++.|.+++|||++|+|||||++.|.+. .+|..|.+.++|.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 5678899999999999999999999998 6788899888764
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.29 E-value=0.00046 Score=79.92 Aligned_cols=56 Identities=30% Similarity=0.268 Sum_probs=36.4
Q ss_pred ccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEE
Q 040099 1007 VMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071 (1236)
Q Consensus 1007 ~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~ 1071 (1236)
..|.|.|++++..|.. ..++++++|+| +|||++|+|||||++.|++...+..|.+.
T Consensus 14 ~~~~v~~~~l~~~~~~---k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~ 69 (361)
T 2qag_A 14 TPGYVGFANLPNQVHR---KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIP 69 (361)
T ss_dssp -------CCHHHHHHT---HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC-------
T ss_pred CCceEEeccchHHhCC---eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCccc
Confidence 3567899999988863 34789999987 99999999999999999887555555443
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.29 E-value=0.0025 Score=64.53 Aligned_cols=24 Identities=38% Similarity=0.481 Sum_probs=21.7
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
-+++|+|++|+|||||++.|.+..
T Consensus 4 ~~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 4 YEIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEEECSTTSSHHHHHHHHHCCS
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 379999999999999999999864
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.25 E-value=0.011 Score=58.44 Aligned_cols=32 Identities=22% Similarity=0.349 Sum_probs=25.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
+.+.-+.|.||+|+|||++++.|........+
T Consensus 22 ~~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~ 53 (145)
T 3n70_A 22 ETDIAVWLYGAPGTGRMTGARYLHQFGRNAQG 53 (145)
T ss_dssp TCCSCEEEESSTTSSHHHHHHHHHHSSTTTTS
T ss_pred CCCCCEEEECCCCCCHHHHHHHHHHhCCccCC
Confidence 45667899999999999999999886644333
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0015 Score=71.58 Aligned_cols=43 Identities=26% Similarity=0.430 Sum_probs=35.9
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeeccc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQK 1079 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~ 1079 (1236)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+||-+++.
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r~ 70 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFRS 70 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGGT
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHHH
Confidence 456778999999999999999999998875 3678889876654
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0016 Score=67.51 Aligned_cols=39 Identities=28% Similarity=0.498 Sum_probs=32.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEE-EEC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV-LID 447 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i-~~~ 447 (1236)
..++|.++.|+|++||||||+.+.|.+.+.+..|.+ .++
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 345799999999999999999999999887777765 344
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=96.16 E-value=0.023 Score=66.76 Aligned_cols=35 Identities=26% Similarity=0.510 Sum_probs=28.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
++..++++|++|+||||++.-|.+.+....-++.+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVll 133 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGV 133 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEE
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 45789999999999999999999888654445544
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0018 Score=69.52 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=32.8
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
.+|.++++||+-. +|......+.+.+.+...+..+|++|++...+
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~~~ 169 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 169 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChHhC
Confidence 4678999999866 78887777777776544456777788876543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=96.15 E-value=0.0022 Score=65.89 Aligned_cols=37 Identities=24% Similarity=0.278 Sum_probs=29.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC---CcEEEECCee
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS---SGHITLDGVE 1076 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~---~G~I~idG~d 1076 (1236)
..++|+|+||||||||++.|.+.+.+. -|.|..++.+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 579999999999999999999876543 4778887654
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0022 Score=66.18 Aligned_cols=38 Identities=29% Similarity=0.477 Sum_probs=28.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc-----------cCCCCcEEEECCeec
Q 040099 1040 KTIALVGESGSGKSTVISLLQRF-----------YDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~-----------~~~~~G~I~idG~di 1077 (1236)
-+++|+|++|+|||||++.|.+- .++..|.+.++|..+
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~ 56 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGENVYIGNWPGVTVEKKEGEFEYNGEKF 56 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTCEEEEECTTSCCEEEEEEEEETTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCccccCCCCeeccceEEEEEeCCcEE
Confidence 37999999999999999999983 223456666666543
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.11 E-value=0.00054 Score=79.30 Aligned_cols=58 Identities=21% Similarity=0.220 Sum_probs=36.6
Q ss_pred CCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 382 RGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 382 ~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.+.+.++|++..|. .+.++++++|+| +|+|++|+|||||++.|.+...+..|.+..++
T Consensus 15 ~~~v~~~~l~~~~~---~k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~~~ 72 (361)
T 2qag_A 15 PGYVGFANLPNQVH---RKSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPGAA 72 (361)
T ss_dssp ------CCHHHHHH---THHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC----------
T ss_pred CceEEeccchHHhC---CeeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccCCC
Confidence 46788999998885 245889999987 99999999999999999887666555544333
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0027 Score=73.59 Aligned_cols=40 Identities=23% Similarity=0.343 Sum_probs=31.0
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC-----------CCCCCcEEEECC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF-----------YDPQAGEVLIDG 448 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~-----------~~~~~G~i~~~g 448 (1236)
.+..|..++|||++|+|||||++.|.|. .+|+.|.+.+++
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~ 68 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPD 68 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCC
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECC
Confidence 4567889999999999999999999987 455666665544
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.07 E-value=0.02 Score=60.35 Aligned_cols=44 Identities=20% Similarity=0.302 Sum_probs=31.3
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
.++.+|++||+- .++.+....+.+.+.+...+..+|+++++...
T Consensus 101 ~~~~vliiDe~~-~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 101 APFKIIFLDEAD-ALTADAQAALRRTMEMYSKSCRFILSCNYVSR 144 (226)
T ss_dssp CSCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred cCceEEEEeChh-hcCHHHHHHHHHHHHhcCCCCeEEEEeCChhh
Confidence 368899999974 46777777777777765445566777776653
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0038 Score=72.54 Aligned_cols=28 Identities=29% Similarity=0.417 Sum_probs=24.6
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
..+..+.|.||+|+||||+++.+.+-..
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 5667899999999999999999988763
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=96.03 E-value=0.0018 Score=70.98 Aligned_cols=42 Identities=29% Similarity=0.426 Sum_probs=34.2
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLK 452 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~ 452 (1236)
..+++..+.|+|++||||||+.+.|.+.+. .|.+.+|+..++
T Consensus 28 ~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~r 69 (253)
T 2p5t_B 28 SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSFR 69 (253)
T ss_dssp CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGGG
T ss_pred cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHHH
Confidence 456788999999999999999999998774 356778875543
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=96.01 E-value=0.0019 Score=68.03 Aligned_cols=35 Identities=31% Similarity=0.432 Sum_probs=28.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
...++|+|++||||||+++.|.+.+ |...+|+-++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d~~ 52 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGDAL 52 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGGGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCCcC
Confidence 4689999999999999999998876 5567765444
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=96.00 E-value=0.0052 Score=62.14 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++|+|++|+|||||++.+.|..
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~ 27 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGEN 27 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999864
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.95 E-value=0.014 Score=67.35 Aligned_cols=41 Identities=20% Similarity=0.464 Sum_probs=31.7
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
..+|..+-|.||+|+||||+++.+.+.......-+.+++..
T Consensus 67 ~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~ 107 (368)
T 3uk6_A 67 KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSE 107 (368)
T ss_dssp CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGG
T ss_pred CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchh
Confidence 34677899999999999999999998876444455555543
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0029 Score=64.94 Aligned_cols=37 Identities=19% Similarity=0.193 Sum_probs=28.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCC---CcEEEECCe
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQ---AGEVLIDGV 449 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~---~G~i~~~g~ 449 (1236)
-..++|+|+||||||||++.|.+.+.+. -|.|..++.
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~ 45 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHH 45 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCC
Confidence 3589999999999999999999876543 355665553
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.016 Score=66.80 Aligned_cols=27 Identities=30% Similarity=0.410 Sum_probs=23.7
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++...+.|.||+|+||||+++.+.+..
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456779999999999999999998765
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=95.93 E-value=0.0042 Score=65.55 Aligned_cols=30 Identities=30% Similarity=0.558 Sum_probs=24.4
Q ss_pred cceeEEecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 404 NGFCLLIPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 404 ~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++.++++.+| +++|+|||||||||++..|.
T Consensus 15 ~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred cceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 3455666654 99999999999999999875
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=95.91 E-value=0.002 Score=67.87 Aligned_cols=32 Identities=38% Similarity=0.480 Sum_probs=26.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
..+++|+|++||||||+.+.|.+.+ |...+++
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~ 49 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEG 49 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeC
Confidence 5689999999999999999998876 4555554
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=95.86 E-value=0.0033 Score=65.25 Aligned_cols=45 Identities=31% Similarity=0.539 Sum_probs=34.1
Q ss_pred EEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhcc
Q 040099 1042 IALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.|+||||||||||++.|..-++ |..|+ +||+|.-=++.+...+.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~~~~~~~svs~TTR~pR~gE--~~G~dY~Fvs~~eF~~~ 61 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKSM 61 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCCCeEEEEEEeccCCCCCC--cCCceeEeecHHHHHHH
Confidence 78999999999999998865432 34565 58888877777776554
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0044 Score=63.90 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.++++|++|+|||||++.+.+.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999984
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=95.81 E-value=0.01 Score=70.96 Aligned_cols=55 Identities=13% Similarity=0.164 Sum_probs=37.0
Q ss_pred hHHHHHHHHHHHhcCCCCEEEEeCcCC-CCCHHHHHHHHHHHHHHccCceEEEEecCch
Q 040099 526 GGQKQRVAIARAMIKDPRILLLDEATS-ALDSESGRMVQEALDRVMINRTTVIVSHRLS 583 (1236)
Q Consensus 526 gGqkqRiaiARal~~~p~ililDE~ts-~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~ 583 (1236)
+.|++....++..+.+++++|+..... ++... ..++.+.+++ .++.+|++.+..+
T Consensus 87 ~~~~~~~~~~~~~~~~ad~il~VvD~~~~~~~~-d~~l~~~l~~--~~~pvilV~NK~D 142 (456)
T 4dcu_A 87 PFLAQIRQQAEIAMDEADVIIFMVNGREGVTAA-DEEVAKILYR--TKKPVVLAVNKLD 142 (456)
T ss_dssp CCHHHHHHHHHHHHHHCSEEEEEEESSSCSCHH-HHHHHHHHTT--CCSCEEEEEECC-
T ss_pred HHHHHHHHHHHhhHhhCCEEEEEEeCCCCCChH-HHHHHHHHHH--cCCCEEEEEECcc
Confidence 358888888999999999777765544 44444 4456666644 4677888877654
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=95.75 E-value=0.012 Score=70.18 Aligned_cols=37 Identities=14% Similarity=0.180 Sum_probs=31.2
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+-|+.+.--+++|+.+.|.|++|+|||||+.-++.-.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~ 224 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNA 224 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 4577776568999999999999999999998877644
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.73 E-value=0.04 Score=60.02 Aligned_cols=27 Identities=22% Similarity=0.252 Sum_probs=22.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++..-+.|.||+|+||||+++.+.+-+
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 344568999999999999999998765
|
| >2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A* | Back alignment and structure |
|---|
Probab=95.67 E-value=0.011 Score=63.14 Aligned_cols=51 Identities=18% Similarity=0.186 Sum_probs=34.2
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC-----------chhhhhcCEEEEEe
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR-----------LSTIKNAHLIAVVS 1206 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR-----------l~ti~~aD~I~Vl~ 1206 (1236)
+++++++||+-- ++.+.-+.+ ..|.+ .+.+||++-|+ .+.+.-||+|.-|.
T Consensus 89 ~~dvViIDEaQ~-l~~~~ve~l-~~L~~--~gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 89 ETKVIGIDEVQF-FDDRICEVA-NILAE--NGFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp TCCEEEECSGGG-SCTHHHHHH-HHHHH--TTCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred CCCEEEEecCcc-CcHHHHHHH-HHHHh--CCCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 589999999974 765533333 23333 38899999993 22345699998863
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=95.66 E-value=0.048 Score=64.01 Aligned_cols=29 Identities=34% Similarity=0.686 Sum_probs=25.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
++.+++++|++|+||||++.-|+..+...
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~ 127 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKR 127 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTT
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHC
Confidence 45799999999999999999998877643
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.65 E-value=0.0052 Score=63.41 Aligned_cols=26 Identities=31% Similarity=0.590 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
+++|||++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 79999999999999999999875443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.64 E-value=0.0022 Score=72.92 Aligned_cols=37 Identities=30% Similarity=0.363 Sum_probs=33.8
Q ss_pred ccccceeEEecCCcE--EEEEcCCCCcHHHHHHHHHcCC
Q 040099 401 QILNGFCLLIPNGTI--AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~--~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+++.+++.+++|+. ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999998865
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.026 Score=65.01 Aligned_cols=138 Identities=18% Similarity=0.281 Sum_probs=75.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANAN 1114 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~ 1114 (1236)
-+++|+.+.|.||+|+|||||+..+..-.....+. +.|+.=|..+ +.. + .+..+.+
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~-------------------vlyi~~E~s~-~~~-~---a~~~g~d 125 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGT-------------------CAFIDAEHAL-DPV-Y---ARALGVN 125 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCC-------------------EEEEESSCCC-CHH-H---HHHTTCC
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCe-------------------EEEEECCCCh-hHH-H---HHHcCCC
Confidence 47999999999999999999997665433212222 3333333211 111 0 1111111
Q ss_pred hHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc--CCCEEEEecCCCCCC-H------------HHHHHHHHHHHH
Q 040099 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK--EPKILLLDEATSALD-I------------ESERVVQDALDQ 1179 (1236)
Q Consensus 1115 ~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr--~p~ILlLDEaTSaLD-~------------~te~~I~~~L~~ 1179 (1236)
. +.+ .+-.. -+ + .|.+.+++.+++ +++++|+|..++=.- . ..++.+.+.+++
T Consensus 126 --~----~~l--~i~~~---~~-~-e~~l~~l~~l~~~~~~~lVVIDsl~~l~~~~e~~g~~gd~~~~~~~r~~~~~lr~ 192 (366)
T 1xp8_A 126 --T----DEL--LVSQP---DN-G-EQALEIMELLVRSGAIDVVVVDSVAALTPRAEIEGDMGDSLPGLQARLMSQALRK 192 (366)
T ss_dssp --G----GGC--EEECC---SS-H-HHHHHHHHHHHTTTCCSEEEEECTTTCCCSTTC--------CCHHHHHHHHHHHH
T ss_pred --H----HHc--eeecC---Cc-H-HHHHHHHHHHHhcCCCCEEEEeChHHhccccccccccccchhhHHHHHHHHHHHH
Confidence 0 000 01111 11 2 356677888874 589999999987541 1 122445555555
Q ss_pred H---c--CCCeEEEEecCchh----------------hh-hcCEEEEEeCCE
Q 040099 1180 V---M--VDRTTLVVAHRLST----------------IK-NAHLIAVVSQGM 1209 (1236)
Q Consensus 1180 ~---~--~~~TvI~IaHRl~t----------------i~-~aD~I~Vl~~G~ 1209 (1236)
+ . .+++||++.|=-.. +. .||.++.+..++
T Consensus 193 L~~~a~~~~~~VI~~nq~~~~~~~~fg~p~~~~gg~al~~~a~~rl~L~r~~ 244 (366)
T 1xp8_A 193 LTAILSKTGTAAIFINQVREKIGVMYGNPETTTGGRALKFYASVRLDVRKIG 244 (366)
T ss_dssp HHHHHTTTCCEEEEEEEC---------------CHHHHHHHCSEEEEEEEES
T ss_pred HHHHHHHcCCEEEEEEecccccCcccCCccccCCcchhhheeeEEEEEEecc
Confidence 4 2 46888888874321 22 378888887554
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=95.62 E-value=0.009 Score=61.70 Aligned_cols=36 Identities=31% Similarity=0.529 Sum_probs=28.3
Q ss_pred EEEEEcCCCCChHHHHHHHh-cc----cCCCCc----EEEECCee
Q 040099 1041 TIALVGESGSGKSTVISLLQ-RF----YDPSSG----HITLDGVE 1076 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~-r~----~~~~~G----~I~idG~d 1076 (1236)
+|+|+|++|+|||||++.+. +- +.|+.| .+.++|..
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~~~ 66 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDGQS 66 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETTEE
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECCEE
Confidence 69999999999999997554 43 667777 67777754
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.016 Score=65.85 Aligned_cols=34 Identities=18% Similarity=0.244 Sum_probs=27.2
Q ss_pred ccccee-EEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 402 ILNGFC-LLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 402 ~l~~i~-~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.|+.+- =-+++|+++.|.||+|||||||+.-++.
T Consensus 86 ~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 86 ELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp HHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred hHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 444432 2578999999999999999999987764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.56 E-value=0.0054 Score=64.49 Aligned_cols=21 Identities=38% Similarity=0.577 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 689999999999999999999
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=95.54 E-value=0.024 Score=64.32 Aligned_cols=27 Identities=19% Similarity=0.267 Sum_probs=24.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
-+++|+.+.|.||+|||||||+.-+..
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999999999987764
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.51 E-value=0.033 Score=64.15 Aligned_cols=27 Identities=22% Similarity=0.188 Sum_probs=23.9
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++..-+.|.||+|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 456789999999999999999998764
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0063 Score=63.99 Aligned_cols=21 Identities=43% Similarity=0.710 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+++|+|++||||||+.+.|.+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~ 23 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE 23 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHH
Confidence 699999999999999999999
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0024 Score=72.54 Aligned_cols=37 Identities=35% Similarity=0.428 Sum_probs=33.8
Q ss_pred ccccceeEEecCCCE--EEEEcCCCCChHHHHHHHhccc
Q 040099 1027 EVFRDLCLTIPPGKT--IALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~--vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.+++.+++.+++|++ ++|+|++||||||+.++|.+.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478999999999999 9999999999999999998854
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=95.48 E-value=0.0065 Score=62.67 Aligned_cols=26 Identities=27% Similarity=0.496 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
.++|+|++|+|||||++.+.+...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 68999999999999999999875443
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.47 E-value=0.044 Score=59.74 Aligned_cols=26 Identities=23% Similarity=0.247 Sum_probs=22.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+..-+.|.||+|+||||+++.+.+.+
T Consensus 38 ~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 38 VPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHh
Confidence 34568899999999999999998754
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.015 Score=67.06 Aligned_cols=38 Identities=21% Similarity=0.372 Sum_probs=29.8
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
.+|..+.|.||+|+||||+++.+.........-+.+++
T Consensus 68 ~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~ 105 (368)
T 3uk6_A 68 IAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAG 105 (368)
T ss_dssp CTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEG
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccc
Confidence 45778999999999999999999987764444455544
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0084 Score=67.11 Aligned_cols=33 Identities=24% Similarity=0.401 Sum_probs=29.2
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
.+++..+.+ .|.-++|+|+||+||||++..|.+
T Consensus 134 ~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~ 166 (314)
T 1ko7_A 134 SLHGVLVDV-YGVGVLITGDSGIGKSETALELIK 166 (314)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHH
T ss_pred eeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHh
Confidence 577777777 789999999999999999998887
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.43 E-value=0.0097 Score=68.23 Aligned_cols=36 Identities=28% Similarity=0.520 Sum_probs=31.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhc-----------ccCCCCcEEEECC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQR-----------FYDPSSGHITLDG 1074 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r-----------~~~~~~G~I~idG 1074 (1236)
|-+++|||++|+|||||++.|.+ -.+|+.|.+.++|
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 56899999999999999999998 4568888888876
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.43 E-value=0.026 Score=63.05 Aligned_cols=24 Identities=29% Similarity=0.353 Sum_probs=21.5
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.-+.|.||+|+|||+|++.+.+-.
T Consensus 37 ~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 37 LILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp SEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 457889999999999999999876
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.42 E-value=0.035 Score=63.97 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=24.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-+++|+++.|.||+|+|||||+.-++..
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~~ 97 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVAQ 97 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHHH
Confidence 4789999999999999999999766543
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.42 E-value=0.014 Score=65.32 Aligned_cols=28 Identities=18% Similarity=0.264 Sum_probs=24.9
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
-.+++|..+.|.||.|+|||||+..+..
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3688999999999999999999988864
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.40 E-value=0.075 Score=59.50 Aligned_cols=26 Identities=27% Similarity=0.533 Sum_probs=22.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++..+-|+||+|+||||+++.+.+.+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34568999999999999999888765
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=95.36 E-value=0.0069 Score=62.53 Aligned_cols=27 Identities=26% Similarity=0.389 Sum_probs=23.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+|.+++|+|++||||||+.+.|...+
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~~l 28 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQEL 28 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 468899999999999999999998644
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
E-value ![]() |
| 1236 | ||||
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 8e-95 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 1e-83 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-91 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 1e-82 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 1e-85 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-78 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 8e-83 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-74 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-80 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 2e-74 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-68 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-65 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 1e-50 | |
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 3e-46 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-46 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-41 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-44 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 2e-38 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 3e-44 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 5e-39 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 2e-43 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 8e-41 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 6e-39 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 4e-33 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 1e-38 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 7e-29 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 2e-38 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 4e-31 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 1e-37 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 4e-32 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 5e-37 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 1e-30 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 8e-37 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 1e-33 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 6e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 7e-27 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-33 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 2e-27 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 8e-32 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 5e-28 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 2e-24 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 3e-23 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-10 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 4e-08 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 3e-04 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 8e-09 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 8e-05 | |
| d3b60a2 | 319 | f.37.1.1 (A:10-328) Multidrug resistance ABC trans | 1e-08 | |
| d2hyda2 | 323 | f.37.1.1 (A:1-323) Putative multidrug export ATP-b | 1e-07 |
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 302 bits (774), Expect = 8e-95
Identities = 126/251 (50%), Positives = 170/251 (67%), Gaps = 2/251 (0%)
Query: 373 VNGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISL 432
V + ++ +G I++ V+F Y + IL L I G A VG SG GKST+I+L
Sbjct: 5 VGAQPIEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINL 63
Query: 433 IQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEE 492
I RFYD +G++LIDG N+K+F +R +IGLV Q+ +L S ++++NI G+ AT EE
Sbjct: 64 IPRFYDVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEE 123
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
+ AA+ ANA FI NLPQG DT VGE G++LSGGQKQR++IAR + +P IL+LDEATS
Sbjct: 124 VVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATS 183
Query: 553 ALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
ALD ES ++QEALD + +RTT+IV+HRLS I +A+ I VI+ G IVE GTH EL+
Sbjct: 184 ALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAKQ 243
Query: 613 YGAYNRLIRLQ 623
GAY L +Q
Sbjct: 244 -GAYEHLYSIQ 253
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 271 bits (694), Expect = 1e-83
Identities = 121/244 (49%), Positives = 160/244 (65%), Gaps = 17/244 (6%)
Query: 1004 LENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFY 1063
+E G + VSF+Y + +D+ L+I G+T+A VG SG GKST+I+L+ RFY
Sbjct: 10 IEIKQGRIDIDHVSFQYNDNEA-PILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFY 68
Query: 1064 DPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI---------------A 1108
D +SG I +DG I+ LR Q+G+V Q+ +LFSDT++ NI A
Sbjct: 69 DVTSGQILIDGHNIKDFLTGSLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAA 128
Query: 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
+MANA+ FI L +GYDT VGERGV+LSGGQKQR++IAR + P IL+LDEATSALD+E
Sbjct: 129 KMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLE 188
Query: 1169 SERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
SE ++Q+ALD + DRTTL+VAHRLSTI +A I V+ G IVE G+H LI+ K G Y
Sbjct: 189 SESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIA-KQGAYE 247
Query: 1229 SLIE 1232
L
Sbjct: 248 HLYS 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 293 bits (751), Expect = 1e-91
Identities = 122/251 (48%), Positives = 172/251 (68%), Gaps = 3/251 (1%)
Query: 374 NGKKLDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLI 433
+ +D GD+E ++V F+YP R + L L IP G ALVG SGSGKST+ SLI
Sbjct: 3 GKRVIDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLI 61
Query: 434 QRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHA-TKEE 492
RFYD G +L+DG +L+E+ L +R ++ LVSQ L + ++ +NIAY +T ++E+
Sbjct: 62 TRFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQ 121
Query: 493 IQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATS 552
I+ AA A A FI + GLDT +GE+G+ LSGGQ+QR+AIARA+++D IL+LDEATS
Sbjct: 122 IEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 181
Query: 553 ALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENP 612
ALD+ES R +Q ALD + NRT+++++HRLS I A+ I V++ G IVE+GTHSELL
Sbjct: 182 ALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQH 241
Query: 613 YGAYNRLIRLQ 623
G Y +L ++Q
Sbjct: 242 -GVYAQLHKMQ 251
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 268 bits (686), Expect = 1e-82
Identities = 118/248 (47%), Positives = 167/248 (67%), Gaps = 18/248 (7%)
Query: 1001 GRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ 1060
R ++ G+++F V+F YP R + R++ L IP GKT+ALVG SGSGKST+ SL+
Sbjct: 4 KRVIDRATGDLEFRNVTFTYPGRE-VPALRNINLKIPAGKTVALVGRSGSGKSTIASLIT 62
Query: 1061 RFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI------------- 1107
RFYD GHI +DG ++++ + LR Q+ +VSQ LF+DT+ NI
Sbjct: 63 RFYDIDEGHILMDGHDLREYTLASLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQI 122
Query: 1108 ---AEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSA 1164
A MA A FI+ + G DT++GE GV LSGGQ+QR+AIARA++++ IL+LDEATSA
Sbjct: 123 EEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSA 182
Query: 1165 LDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
LD ESER +Q ALD++ +RT+LV+AHRLSTI+ A I VV G+IVE+G+H L++ ++
Sbjct: 183 LDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLA-QH 241
Query: 1225 GIYTSLIE 1232
G+Y L +
Sbjct: 242 GVYAQLHK 249
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 276 bits (707), Expect = 1e-85
Identities = 103/244 (42%), Positives = 156/244 (63%), Gaps = 4/244 (1%)
Query: 381 IRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQ 440
+ G ++ +DV+F+YP RPD +L G + G + ALVG +GSGKSTV +L+Q Y P
Sbjct: 8 LEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPT 67
Query: 441 AGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEA 499
G++L+DG L +++ +++ ++ V QEP + S+++NIAYG T EEI AAA
Sbjct: 68 GGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVK 127
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
+ A FI LPQG DT V E G QLSGGQ+Q VA+ARA+I+ P +L+LD+ATSALD+ S
Sbjct: 128 SGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQ 187
Query: 560 RMVQEALDRVM--INRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617
V++ L +R+ ++++ LSL+ A+ I ++ G I E GTH +L+E G Y
Sbjct: 188 LQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEKK-GCYW 246
Query: 618 RLIR 621
+++
Sbjct: 247 AMVQ 250
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 255 bits (652), Expect = 5e-78
Identities = 99/246 (40%), Positives = 148/246 (60%), Gaps = 19/246 (7%)
Query: 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064
++ G VQF VSF YP RP + V + L T+ PG+ ALVG +GSGKSTV +LLQ Y
Sbjct: 6 LHLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQ 65
Query: 1065 PSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----------------A 1108
P+ G + LDG + + + ++L +Q+ V QEP +F +++ NI A
Sbjct: 66 PTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAA 125
Query: 1109 EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
+ A+ FISGL +GYDT V E G QLSGGQ+Q VA+ARA++++P +L+LD+ATSALD
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 1169 SERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGI 1226
S+ V+ L + R+ L++ LS ++ A I + G I E G+H+ L+ K G
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLME-KKGC 244
Query: 1227 YTSLIE 1232
Y ++++
Sbjct: 245 YWAMVQ 250
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 268 bits (686), Expect = 8e-83
Identities = 110/240 (45%), Positives = 157/240 (65%), Gaps = 1/240 (0%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
DI +++ F Y IL+ L I G + +VG SGSGKST+ LIQRFY P+ G+
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
VLIDG +L W+R ++G+V Q+ VLL+ SI DNI+ + E++ AA+ A A
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
FI L +G +T VGE G LSGGQ+QR+AIARA++ +P+IL+ DEATSALD ES ++
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ ++ RT +I++HRLS ++NA+ I V+++GKIVE+G H ELL P Y+ L +LQ
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 245 bits (627), Expect = 1e-74
Identities = 104/238 (43%), Positives = 154/238 (64%), Gaps = 16/238 (6%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ F + F+Y + ++ L+I G+ I +VG SGSGKST+ L+QRFY P +G
Sbjct: 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQ 59
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIA---------------EMANAN 1114
+ +DG ++ WLR+Q+GVV Q+ VL + +I NI+ ++A A+
Sbjct: 60 VLIDGHDLALADPNWLRRQVGVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAH 119
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
FIS L+EGY+T+VGE+G LSGGQ+QR+AIARA+V PKIL+ DEATSALD ESE V+
Sbjct: 120 DFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEHVIM 179
Query: 1175 DALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+ ++ RT +++AHRLST+KNA I V+ +G IVE+G H+ L+S +Y+ L +
Sbjct: 180 RNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQ 237
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 262 bits (670), Expect = 2e-80
Identities = 104/242 (42%), Positives = 158/242 (65%), Gaps = 4/242 (1%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + V+F+Y EQIL +I A G SG GKST+ SL++RFY P AGE+
Sbjct: 2 LSARHVDFAYD--DSEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAANAS 503
IDG + L+ R +IG VSQ+ +++ +IR+N+ YG + T E++ + A A
Sbjct: 60 TIDGQPIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFAR 119
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
F++N+P L+T VGE G+++SGGQ+QR+AIARA +++P+IL+LDEAT++LDSES MVQ
Sbjct: 120 SFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQ 179
Query: 564 EALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623
+ALD +M RTT++++HRLS I +A+ I I++G+I G H+EL+ Y + + Q
Sbjct: 180 KALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVATH-PLYAKYVSEQ 238
Query: 624 ET 625
T
Sbjct: 239 LT 240
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 244 bits (625), Expect = 2e-74
Identities = 99/233 (42%), Positives = 141/233 (60%), Gaps = 19/233 (8%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
V F Y ++ RD+ P IA G SG GKST+ SLL+RFY P++G IT+DG
Sbjct: 7 VDFAYDDSE--QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQ 64
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSDTIRANI----------------AEMANANGFISG 1119
I + ++ R Q+G VSQ+ + + TIR N+ ++A A F+
Sbjct: 65 PIDNISLENWRSQIGFVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVEN 124
Query: 1120 LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQ 1179
+ + +T VGERGV++SGGQ+QR+AIARA ++ PKIL+LDEAT++LD ESE +VQ ALD
Sbjct: 125 MPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDS 184
Query: 1180 VMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
+M RTTLV+AHRLSTI +A I + +G I G H L++ + +Y +
Sbjct: 185 LMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVA-THPLYAKYVS 236
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 229 bits (586), Expect = 1e-68
Identities = 64/254 (25%), Positives = 124/254 (48%), Gaps = 15/254 (5%)
Query: 379 DDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438
D + + +V+FS+ +L L I G + A+ G++GSGK++++ LI +
Sbjct: 28 GDRKHSSDENNVSFSHLCLVGNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELE 87
Query: 439 PQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAE 498
G + G ++ SQ ++ +I++NI +G + + ++ +
Sbjct: 88 ASEGIIKHSG-------------RVSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVK 133
Query: 499 AANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSES 558
A I + +T +GE G+ LSGGQ+ R+++ARA+ KD + LLD LD +
Sbjct: 134 ACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFT 193
Query: 559 GRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617
V E+ + ++M N+T ++V+ ++ +R A+ I ++ QG GT SEL +
Sbjct: 194 EEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSLRPDFSS 253
Query: 618 RLIRLQETCKESEK 631
+L+ + +E+
Sbjct: 254 KLMGYDTFDQFTEE 267
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 221 bits (565), Expect = 1e-65
Identities = 62/273 (22%), Positives = 119/273 (43%), Gaps = 36/273 (13%)
Query: 975 SKAKSSAASVFGLIDQVSKIDSSEYTGRTLENVMGEVQFLRVSFKYPTRPHIEVFRDLCL 1034
+ FG + + + + R + V F + P V +++ L
Sbjct: 6 ENVTAFWEEGFGELLEKVQQSNG---DRKHSSDENNVSFSHLCLVG--NP---VLKNINL 57
Query: 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094
I G+ +A+ G +GSGK++++ L+ + S G I G ++ SQ
Sbjct: 58 NIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------RVSFCSQ 104
Query: 1095 EPVLFSDTIRANI--------------AEMANANGFISGLQEGYDTLVGERGVQLSGGQK 1140
+ TI+ NI + I+ E +T++GE GV LSGGQ+
Sbjct: 105 FSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQR 164
Query: 1141 QRVAIARAIVKEPKILLLDEATSALDIES-ERVVQDALDQVMVDRTTLVVAHRLSTIKNA 1199
R+++ARA+ K+ + LLD LD+ + E+V + + ++M ++T ++V ++ ++ A
Sbjct: 165 ARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKA 224
Query: 1200 HLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232
I ++ QG G+ L S + + L+
Sbjct: 225 DKILILHQGSSYFYGTFSELQSLRPDFSSKLMG 257
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 176 bits (447), Expect = 1e-50
Identities = 67/230 (29%), Positives = 113/230 (49%), Gaps = 13/230 (5%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I+LK+V +Y + L L I G +++G SGSGKST++++I P GE
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 444 VLIDGVNL----KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAA 496
V ID + + K R+KIG V Q+ L+ + +N+ + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 497 AEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDS 556
+ A + L + QLSGGQ+QRVAIARA+ +P I+L D+ T ALDS
Sbjct: 122 RKRALECLKMAELE---ERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDS 178
Query: 557 ESGRMVQEALDRV--MINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604
++G + + L ++ +T V+V+H +++ R I ++ G++ +
Sbjct: 179 KTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEK 228
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 163 bits (415), Expect = 3e-46
Identities = 56/226 (24%), Positives = 101/226 (44%), Gaps = 22/226 (9%)
Query: 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++ V+ Y I +++ L I G+ ++++G SGSGKST+++++ P+ G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 1070 ITLDGVEIQKL----QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF-------- 1116
+ +D ++ L K R ++G V Q+ L T N+
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEER 121
Query: 1117 ------ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESE 1170
+ E + + QLSGGQ+QRVAIARA+ P I+L D+ T ALD ++
Sbjct: 122 RKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKTG 181
Query: 1171 RVVQDALDQV--MVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKG 1214
+ L ++ +T +VV H ++ + I + G + +
Sbjct: 182 EKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREE 227
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 163 bits (415), Expect = 4e-46
Identities = 59/235 (25%), Positives = 113/235 (48%), Gaps = 18/235 (7%)
Query: 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
+++L+++ + + +N L I +G L+G SG GK+T + +I +P G
Sbjct: 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGR 62
Query: 444 VLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHA--TKEEIQAAAEAA 500
+ + L I +V Q + ++ +NIA+ K+EI A
Sbjct: 63 IYFGDRD--VTYLPPKDRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWA 120
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ + + L+ QLSGGQ+QRVA+ARA++ +P +LL+DE S LD++
Sbjct: 121 AE---LLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRV 173
Query: 561 MVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
++ + ++ TT+ V+H + IAV+ +G++++ G+ +E+ P
Sbjct: 174 AMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRP 228
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 149 bits (378), Expect = 4e-41
Identities = 63/239 (26%), Positives = 109/239 (45%), Gaps = 27/239 (11%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M EV+ ++ ++ L LTI G+ + L+G SG GK+T + ++ +P+
Sbjct: 4 MVEVKLENLTKRFGNF---TAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTE 60
Query: 1068 GHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF---------- 1116
G I ++ L K + + +V Q ++ T+ NIA F
Sbjct: 61 GRIYFGDRDVTYLPPKD--RNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 1117 ----ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERV 1172
+ ++E + QLSGGQ+QRVA+ARAIV EP +LL+DE S LD +
Sbjct: 119 WAAELLQIEELLNRYPA----QLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDAKLRVA 174
Query: 1173 VQDALDQVMVDR--TTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
++ + ++ TT+ V H IAV+++G +++ GS + N ++
Sbjct: 175 MRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 158 bits (402), Expect = 2e-44
Identities = 77/240 (32%), Positives = 123/240 (51%), Gaps = 13/240 (5%)
Query: 385 IELKDVNFSYPARPDE-QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE 443
I+L ++ + Q LN L +P G I ++G SG+GKST+I + P G
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 444 VLIDGVN---LKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEA 499
VL+DG L E +L R +IG++ Q LLSS ++ N+A + +
Sbjct: 62 VLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRV 121
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
+ L D+ LSGGQKQRVAIARA+ +P++LL DEATSALD +
Sbjct: 122 TELLSLV-GLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPATT 176
Query: 560 RMVQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAY 616
R + E L + + T ++++H + +++ + +AVI G+++E+ T SE+ +P
Sbjct: 177 RSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPL 236
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 141 bits (358), Expect = 2e-38
Identities = 72/235 (30%), Positives = 120/235 (51%), Gaps = 26/235 (11%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M ++ + F TR I+ ++ L +P G+ ++G SG+GKST+I + P+
Sbjct: 1 MIKLSNITKVFHQGTRT-IQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTE 59
Query: 1068 GHITLDGVEIQKL---QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGF------- 1116
G + +DG E+ L ++ R+Q+G++ Q L S T+ N+A +
Sbjct: 60 GSVLVDGQELTTLSESELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 1117 -------ISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIES 1169
+ GL + +D+ LSGGQKQRVAIARA+ PK+LL DEATSALD +
Sbjct: 120 RVTELLSLVGLGDKHDSYPS----NLSGGQKQRVAIARALASNPKVLLCDEATSALDPAT 175
Query: 1170 ERVVQDALDQV--MVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
R + + L + + T L++ H + +K +AV+S G ++E+ + + S
Sbjct: 176 TRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 159 bits (403), Expect = 3e-44
Identities = 67/244 (27%), Positives = 115/244 (47%), Gaps = 22/244 (9%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ + D++ Y ++L G L G + +++G+SGSGKST + I P G +
Sbjct: 3 LHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAI 59
Query: 445 LIDGVNL-------------KEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATK 490
+++G N+ + QL+ +R ++ +V Q L S ++ +N+
Sbjct: 60 IVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLG 119
Query: 491 EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEA 550
A E A + + LSGGQ+QRV+IARA+ +P +LL DE
Sbjct: 120 LSKHDARERALKYLAKVGIDERAQGKYPV---HLSGGQQQRVSIARALAMEPDVLLFDEP 176
Query: 551 TSALDSESGRMVQEALDR-VMINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSEL 608
TSALD E V + + +T V+V+H + R+ ++ + + QGKI E+G ++
Sbjct: 177 TSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236
Query: 609 LENP 612
NP
Sbjct: 237 FGNP 240
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 143 bits (363), Expect = 5e-39
Identities = 70/250 (28%), Positives = 108/250 (43%), Gaps = 39/250 (15%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
V L + EV + + L G I+++G SGSGKST + + PS G
Sbjct: 4 HVIDLHKRYG-----GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 58
Query: 1070 ITLDGVEIQKL-------------QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANG 1115
I ++G I + Q++ LR ++ +V Q L+S T+ N+ E
Sbjct: 59 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVL 118
Query: 1116 FIS---------------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
+S G+ E G+ V LSGGQ+QRV+IARA+ EP +LL DE
Sbjct: 119 GLSKHDARERALKYLAKVGIDERAQ---GKYPVHLSGGQQQRVSIARALAMEPDVLLFDE 175
Query: 1161 ATSALDI-ESERVVQDALDQVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHES 1218
TSALD V++ +T +VV H + ++ + + + QG I E+G E
Sbjct: 176 PTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQ 235
Query: 1219 LISTKNGIYT 1228
+
Sbjct: 236 VFGNPQSPRL 245
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 155 bits (394), Expect = 2e-43
Identities = 55/238 (23%), Positives = 101/238 (42%), Gaps = 28/238 (11%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L+DV S L + G I LVG +G+GKST+++ + G +
Sbjct: 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSI 55
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLL-SSSIRDNIAYGKTHATKEEIQAAAEAANAS 503
G L+ + + +SQ+ ++ + + + T+ E+ A
Sbjct: 56 QFAGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL-- 113
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK-------DPRILLLDEATSALDS 556
LD +G QLSGG+ QRV +A +++ ++LLLDE ++LD
Sbjct: 114 --------ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNSLDV 165
Query: 557 ESGRMVQEALDRVMI-NRTTVIVSHRLSLI-RNANIIAVIQQGKIVEKGTHSELLENP 612
+ + L + V+ SH L+ R+A+ +++ GK++ G E+L P
Sbjct: 166 AQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTPP 223
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 148 bits (374), Expect = 8e-41
Identities = 46/212 (21%), Positives = 92/212 (43%), Gaps = 16/212 (7%)
Query: 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ 1087
L + G+ + LVG +G+GKST+++ + G I G ++ L
Sbjct: 14 RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLAL 72
Query: 1088 QMGVVSQEP-VLFSDTIRANIAEMANANGFISGLQE-----GYDTLVGERGVQLSGGQKQ 1141
+SQ+ F+ + + + L + D +G QLSGG+ Q
Sbjct: 73 HRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALALDDKLGRSTNQLSGGEWQ 132
Query: 1142 RVAIARAIVK-------EPKILLLDEATSALDIESERVVQDALDQVMVD-RTTLVVAHRL 1193
RV +A +++ ++LLLDE ++LD+ + + L + ++ +H L
Sbjct: 133 RVRLAAVVLQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDL 192
Query: 1194 S-TIKNAHLIAVVSQGMIVEKGSHESLISTKN 1224
+ T+++AH ++ G ++ G E +++ N
Sbjct: 193 NHTLRHAHRAWLLKGGKMLASGRREEVLTPPN 224
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 143 bits (361), Expect = 6e-39
Identities = 55/235 (23%), Positives = 102/235 (43%), Gaps = 14/235 (5%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ L DV + + + L + +G L+G SG GK+T + +I +P G++
Sbjct: 4 VRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQI 60
Query: 445 LIDGVNL----KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAA 500
I + K + I +V Q L + K Q +
Sbjct: 61 YIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRV 120
Query: 501 NASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGR 560
+ L + L+ +LSGGQ+QRVA+ RA+++ P++ L+DE S LD++
Sbjct: 121 REVAELLGLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAKLRV 176
Query: 561 MVQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
++ L ++ + TT+ V+H + IAV+ +G + + G+ E+ + P
Sbjct: 177 RMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKP 231
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 126 bits (318), Expect = 4e-33
Identities = 56/243 (23%), Positives = 103/243 (42%), Gaps = 29/243 (11%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M V+ + V + + R++ L + G+ + L+G SG GK+T + ++ +PS
Sbjct: 1 MAGVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSR 57
Query: 1068 GHITLDGVEIQKLQ----VKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS----- 1118
G I + + + V + + +V Q L+ + +
Sbjct: 58 GQIYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEID 117
Query: 1119 ----------GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIE 1168
GL E + +LSGGQ+QRVA+ RAIV++P++ L+DE S LD +
Sbjct: 118 QRVREVAELLGLTELLNRKPR----ELSGGQRQRVALGRAIVRKPQVFLMDEPLSNLDAK 173
Query: 1169 SERVVQDALD--QVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNG 1225
++ L Q + TT+ V H IAV+++G++ + GS + +
Sbjct: 174 LRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPAN 233
Query: 1226 IYT 1228
+
Sbjct: 234 TFV 236
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 142 bits (359), Expect = 1e-38
Identities = 62/234 (26%), Positives = 105/234 (44%), Gaps = 18/234 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
++L++V ++ + + L I G VG SG GKST++ +I +G++
Sbjct: 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDL 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHA--TKEEIQAAAEAAN 501
I + + +G+V Q L S+ +N+++G A KE I
Sbjct: 58 FIGEKRMND--TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVA 115
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ +L LD LSGGQ+QRVAI R ++ +P + LLDE S LD+
Sbjct: 116 EVLQLAHL---LDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 562 VQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
++ + R+ + RT + V+H A+ I V+ G++ + G EL P
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYP 222
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 113 bits (285), Expect = 7e-29
Identities = 55/237 (23%), Positives = 93/237 (39%), Gaps = 29/237 (12%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
++Q + ++ + V +D+ L I G+ + VG SG GKST++ ++ +SG
Sbjct: 2 QLQNVTKAWG-----EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGD 56
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFIS---------- 1118
+ + + + +G+V Q L+ ++ N++ G
Sbjct: 57 LFIGEKRMNDT--PPAERGVGMVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQV 114
Query: 1119 ----GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
L D LSGGQ+QRVAI R +V EP + LLDE S LD ++
Sbjct: 115 AEVLQLAHLLDRKPK----ALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQMR 170
Query: 1175 DALD--QVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+ + RT + V H A I V+ G + + G L +
Sbjct: 171 IEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 142 bits (358), Expect = 2e-38
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 12/233 (5%)
Query: 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG 442
G + +KD+ + +IL G I G I L+G +G+GK+T + +I P +G
Sbjct: 1 GAVVVKDLRKRIGKK---EILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSG 57
Query: 443 EVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAAN 501
V + G N + +R+ I + +E + + + + +
Sbjct: 58 IVTVFGKN-VVEEPHEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVER 116
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
A+ GL + + S G +++ IARA++ +PR+ +LDE TS LD + R
Sbjct: 117 ATEIA-----GLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNARE 171
Query: 562 VQEALDRVMINRTTVI-VSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
V++ L + T++ SH + + + IA+I G IVE GT EL E
Sbjct: 172 VRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKERY 224
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 120 bits (302), Expect = 4e-31
Identities = 59/229 (25%), Positives = 103/229 (44%), Gaps = 27/229 (11%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
V+ LR E+ + + I G+ L+G +G+GK+T + ++ PSSG
Sbjct: 4 VVKDLRKRIG-----KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGI 58
Query: 1070 ITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTI---------------RANIAEMANAN 1114
+T+ G + + +R+ + + +E + + + I EM
Sbjct: 59 VTVFGKNVVEEP-HEVRKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA 117
Query: 1115 GFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQ 1174
I+GL E V S G +++ IARA++ P++ +LDE TS LD+ + R V+
Sbjct: 118 TEIAGLGEKIKDRVS----TYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVR 173
Query: 1175 DALDQVMVD-RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
L Q + T LV +H + ++ IA++ G IVE G+ E L
Sbjct: 174 KILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKE 222
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 139 bits (352), Expect = 1e-37
Identities = 58/233 (24%), Positives = 108/233 (46%), Gaps = 14/233 (6%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++ ++ Y A + G L +P G I L+G +G+GK+T +S I Q G++
Sbjct: 7 LEVQSLHVYYGAI---HAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKI 63
Query: 445 LIDGVNL--KEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYG-KTHATKEEIQAAAEAAN 501
+ +G ++ K + + + ++ +N+ G KE I+ E
Sbjct: 64 IFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIF 123
Query: 502 ASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRM 561
+ L L + + G LSGG++Q +AI RA++ P++L++DE + L
Sbjct: 124 S------LFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSE 177
Query: 562 VQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
V E + ++ T ++V A+ V++ G+IV +G SELL+N
Sbjct: 178 VFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDNE 230
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 123 bits (310), Expect = 4e-32
Identities = 55/230 (23%), Positives = 101/230 (43%), Gaps = 19/230 (8%)
Query: 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065
+++ EVQ L V + I + + L +P G+ + L+G +G+GK+T +S +
Sbjct: 4 DIVLEVQSLHVYYG-----AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRA 58
Query: 1066 SSGHITLDGVEIQKL-QVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQE- 1122
G I +G +I R + +V + +F + T+ N+ A G++
Sbjct: 59 QKGKIIFNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRD 118
Query: 1123 ---------GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
+ + G LSGG++Q +AI RA++ PK+L++DE + L V
Sbjct: 119 LEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVSEV 178
Query: 1174 QDALDQVMVD-RTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIS 1221
+ + ++ + T L+V AH V+ G IV +G L+
Sbjct: 179 FEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLD 228
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 138 bits (348), Expect = 5e-37
Identities = 52/246 (21%), Positives = 107/246 (43%), Gaps = 25/246 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+ +++ + + L+G + + G + ++G +GSGKST+I++I F G V
Sbjct: 5 LRTENIVKYFGEF---KALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRV 61
Query: 445 LIDGVNL-KEFQLKWIREKIGLVSQEPV-LLSSSIRDNIAYG-------------KTHAT 489
+ ++ + + I Q P L ++ +N+ G
Sbjct: 62 YFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWI 121
Query: 490 KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDE 549
+E + +A F+ L D GE LSGGQ + V I RA++ +P+++++DE
Sbjct: 122 PKEEEMVEKAFKILEFL-KLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 550 ATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSE 607
+ + + + + T +I+ HRL ++ N + + V+ G+I+ +G E
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 608 LLENPY 613
++N
Sbjct: 237 EIKNVL 242
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 119 bits (300), Expect = 1e-30
Identities = 50/242 (20%), Positives = 93/242 (38%), Gaps = 40/242 (16%)
Query: 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069
+ + F + + +++ G ++G +GSGKST+I+++ F G
Sbjct: 6 RTENIVKYF-----GEFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGR 60
Query: 1070 ITLDGVEIQKLQVKWL-RQQMGVVSQEPVLFSD-TIRANIA------------------- 1108
+ + +I + L + Q P + T+ N+
Sbjct: 61 VYFENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKW 120
Query: 1109 --------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160
E A L YD GE LSGGQ + V I RA++ PK++++DE
Sbjct: 121 IPKEEEMVEKAFKILEFLKLSHLYDRKAGE----LSGGQMKLVEIGRALMTNPKMIVMDE 176
Query: 1161 ATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHES 1218
+ + + + + ++ T L++ HRL + N + V+ G I+ +G E
Sbjct: 177 PIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEE 236
Query: 1219 LI 1220
I
Sbjct: 237 EI 238
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 135 bits (342), Expect = 8e-37
Identities = 48/217 (22%), Positives = 97/217 (44%), Gaps = 27/217 (12%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
+E++D++ Y D+ +L + I G + G +G GK+T++ I + P GE+
Sbjct: 3 LEIRDLSVGY----DKPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEI 58
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYG----KTHATKEEIQAAAEA 499
+ +GV + + ++ KI + +E ++ S+ D + K EI A E+
Sbjct: 59 IYNGVPITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALES 113
Query: 500 ANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESG 559
K L +LS G +RV +A ++ + I +LD+ A+D +S
Sbjct: 114 VEVLDLKKKLG------------ELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSK 161
Query: 560 RMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596
V +++ ++ + VI+S R L ++ + +
Sbjct: 162 HKVLKSILEILKEKGIVIISSREEL-SYCDVNENLHK 197
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 126 bits (318), Expect = 1e-33
Identities = 38/185 (20%), Positives = 87/185 (47%), Gaps = 17/185 (9%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+S Y V + +TI G + G +G GK+T++ + + P G I +GV
Sbjct: 8 LSVGYDK----PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGV 63
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFISGLQEGYDTL------- 1127
I K ++ ++ + +E ++ ++ + +A+ G E D L
Sbjct: 64 PITK-----VKGKIFFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD 118
Query: 1128 VGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTL 1187
+ ++ +LS G +RV +A ++ +I +LD+ A+D +S+ V ++ +++ ++ +
Sbjct: 119 LKKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIV 178
Query: 1188 VVAHR 1192
+++ R
Sbjct: 179 IISSR 183
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 128 bits (322), Expect = 6e-34
Identities = 62/232 (26%), Positives = 118/232 (50%), Gaps = 18/232 (7%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
IE++ ++ + L+ L + +G ++G +G+GK+ + LI F+ P +G +
Sbjct: 2 IEIESLSRKW----KNFSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRI 57
Query: 445 LIDGVNLKEFQLKWIREKIGLVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANAS 503
L+DG ++ + L + I V Q L +++ N+ +G ++ + + A
Sbjct: 58 LLDGKDVTD--LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARD- 114
Query: 504 HFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQ 563
++ + + + LSGG++QRVA+ARA++ +P+ILLLDE SALD + +
Sbjct: 115 -------LKIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAR 167
Query: 564 EALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENP 612
E L + T + ++H + R A+ IAV+ GK+++ G E+ E P
Sbjct: 168 EMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKP 219
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 108 bits (270), Expect = 7e-27
Identities = 61/228 (26%), Positives = 100/228 (43%), Gaps = 25/228 (10%)
Query: 1016 VSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGV 1075
+S K+ +L L + G+ ++G +G+GK+ + L+ F+ P SG I LDG
Sbjct: 7 LSRKWKNF----SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGK 62
Query: 1076 EIQKLQVKWLRQQMGVVSQEPVLFSD-TIRANIAEMANANGFIS-----------GLQEG 1123
++ L + + + V Q LF ++ N+ ++
Sbjct: 63 DVTDLSPE--KHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHL 120
Query: 1124 YDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVM 1181
D + LSGG++QRVA+ARA+V PKILLLDE SALD ++ ++ L
Sbjct: 121 LD----RNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQENAREMLSVLHKK 176
Query: 1182 VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
T L + H + + A IAVV G +++ G E +
Sbjct: 177 NKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGRV 224
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 128 bits (322), Expect = 1e-33
Identities = 68/241 (28%), Positives = 120/241 (49%), Gaps = 25/241 (10%)
Query: 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEV 444
I +K+V+ + + L+ + I NG ++G SG+GK+T + +I P GE+
Sbjct: 4 IIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGEL 62
Query: 445 LIDGVNLKEFQLKWIRE---KIGLVSQEPVLLSS-SIRDNIAYGKTHAT------KEEIQ 494
D + + KIG+V Q L + + +NIA+ T+ ++ ++
Sbjct: 63 YFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVE 122
Query: 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSAL 554
A+ + H + + P+ +LSG Q+QRVA+ARA++KDP +LLLDE S L
Sbjct: 123 EVAKILDIHHVLNHFPR-----------ELSGAQQQRVALARALVKDPSLLLLDEPFSNL 171
Query: 555 DSESGRMVQEALDRV--MINRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611
D+ + + V + T ++VSH + I A+ + V+ +GK+V+ G +L +N
Sbjct: 172 DARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDN 231
Query: 612 P 612
P
Sbjct: 232 P 232
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 110 bits (275), Expect = 2e-27
Identities = 58/238 (24%), Positives = 102/238 (42%), Gaps = 18/238 (7%)
Query: 1008 MGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSS 1067
M + VS + + + ++ + I G+ ++G SG+GK+T + ++ PS+
Sbjct: 1 MVRIIVKNVSKVFK-KGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPST 59
Query: 1068 GHITLDGVEIQKLQVKWLR---QQMGVVSQEPVLFSDTIRANIAEMANANGFISG----- 1119
G + D + + +++G+V Q L+ + N +S
Sbjct: 60 GELYFDDRLVASNGKLIVPPEDRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRK 119
Query: 1120 ------LQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVV 1173
++ +LSG Q+QRVA+ARA+VK+P +LLLDE S LD
Sbjct: 120 RVEEVAKILDIHHVLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRDSA 179
Query: 1174 QDALD--QVMVDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228
+ + Q + T LVV+H + I A + V+ +G +V+ G E L I
Sbjct: 180 RALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 122 bits (308), Expect = 8e-32
Identities = 70/222 (31%), Positives = 106/222 (47%), Gaps = 20/222 (9%)
Query: 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPV 471
L+G +G+GKS + LI P GEV ++G ++ L R IG V Q+
Sbjct: 23 GRDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--PLPPERRGIGFVPQDYA 80
Query: 472 LLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQ 530
L S+ NIAYG + + E I +L + +LSGG++Q
Sbjct: 81 LFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHL-------LDRKPARLSGGERQ 133
Query: 531 RVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRV--MINRTTVIVSHRLSLIRN- 587
RVA+ARA++ PR+LLLDE SA+D ++ ++ E L V + + V+H L
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 588 ANIIAVIQQGKIVEKGTHSELLENP-------YGAYNRLIRL 622
A+ +AV+ G+IVEKG EL A N L+++
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLSARNLLLKV 235
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 111 bits (279), Expect = 5e-28
Identities = 65/213 (30%), Positives = 101/213 (47%), Gaps = 15/213 (7%)
Query: 1031 DLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090
++ + L+G +G+GKS + L+ P G + L+G +I L + R+ +G
Sbjct: 17 NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73
Query: 1091 VVSQEPVLFSDTIRANIAEMANANGFISGLQE---------GYDTLVGERGVQLSGGQKQ 1141
V Q+ LF N G L+ + +LSGG++Q
Sbjct: 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKLGIAHLLDRKPARLSGGERQ 133
Query: 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALD--QVMVDRTTLVVAHRLSTIKN- 1198
RVA+ARA+V +P++LLLDE SA+D++++ V+ + L Q D L V H L
Sbjct: 134 RVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAML 193
Query: 1199 AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231
A +AV+ G IVEKG + L S KNG +
Sbjct: 194 ADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 99.3 bits (246), Expect = 2e-24
Identities = 17/175 (9%), Positives = 46/175 (26%), Gaps = 14/175 (8%)
Query: 1042 IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSD 1101
I + GE G GK+T++ + + + V + + + + + ++ + S
Sbjct: 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSK 62
Query: 1102 TIRANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEA 1161
+ V + + A A K++++DE
Sbjct: 63 FFTSKKLVG--------------SYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEI 108
Query: 1162 TSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216
+ + + I + +++E
Sbjct: 109 GKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPGAVLIELTPE 163
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 95.8 bits (237), Expect = 3e-23
Identities = 23/196 (11%), Positives = 45/196 (22%), Gaps = 31/196 (15%)
Query: 417 ALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSS 476
+ G G GK+T++ I +A + V E + + I ++ + S
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKF 63
Query: 477 IRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536
G V + A
Sbjct: 64 FTSKKLVGSYG-----------------------------VNVQYFEELAIPILERAYRE 94
Query: 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596
A +++++DE N V + I +
Sbjct: 95 AKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIRDVHPLVKEIRRLPG 154
Query: 597 GKIVE--KGTHSELLE 610
++E +LE
Sbjct: 155 AVLIELTPENRDVILE 170
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.6 bits (130), Expect = 8e-09
Identities = 25/186 (13%), Positives = 55/186 (29%), Gaps = 8/186 (4%)
Query: 418 LVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477
L G G GK+T+I V + I + +S LS
Sbjct: 6 LTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVG 65
Query: 478 RDNIAYGKTHATKEEIQAAAEAANASHFI-----KNLPQGLDTNVGEHGIQLSGGQKQRV 532
+ + + + + + + G V + ++ + +
Sbjct: 66 LEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFI 125
Query: 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIA 592
R + P ++L +V+E +R + V +R L+ +I+
Sbjct: 126 QAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENRNHLLP--DIVT 182
Query: 593 VIQQGK 598
+Q +
Sbjct: 183 CVQSSR 188
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.7 bits (99), Expect = 8e-05
Identities = 19/173 (10%), Positives = 44/173 (25%), Gaps = 21/173 (12%)
Query: 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLF 1099
+ + L G G GK+T+I S + E + + + + +S
Sbjct: 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPL 61
Query: 1100 SDTIRANIAEM--------------------ANANGFISGLQEGYDTLVGERGVQLSGGQ 1139
S G V + ++
Sbjct: 62 SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFS 121
Query: 1140 KQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192
+ + R + P ++L +V++ ++ V + +R
Sbjct: 122 QLFIQAVRQTLSTPGTIILGTIPVPKGKPLA-LVEEIRNRKDVKVFNVTKENR 173
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 319 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 56.1 bits (133), Expect = 1e-08
Identities = 51/307 (16%), Positives = 113/307 (36%), Gaps = 5/307 (1%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVA 120
++V IA N F+ L L+D +++ + L V +
Sbjct: 17 GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDRSVLLWMPL-----VVIGLMILRGI 71
Query: 121 SFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIG 180
+ + + + + L + F + +TG ++ RI+ D+ + +
Sbjct: 72 TSYISSYCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQSTGTLLSRITYDSEQVASSSS 131
Query: 181 EKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAAD 240
+ ++ GAS IG F++ F+ W L++ ++ P + IA V+ K +++ Q
Sbjct: 132 GALITVVREGASIIGLFIMMFYYSWQLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTM 191
Query: 241 SLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVFIIF 300
T Q + + V F G++ + ++K K ++ A+ + I
Sbjct: 192 GQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSASSISDPIIQLIAS 251
Query: 301 SAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFE 360
A ++ + + + G + V ++ L + + F G AA F
Sbjct: 252 LALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFA 311
Query: 361 AINRKPE 367
++ + E
Sbjct: 312 ILDSEQE 318
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 323 | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 52.6 bits (124), Expect = 1e-07
Identities = 42/310 (13%), Positives = 90/310 (29%), Gaps = 4/310 (1%)
Query: 61 LMLVGTIAATGNGLCVPFVALLFGDLMDSIGQN---ATKTLAIHGVLKVSKKFVYLALGA 117
+ I + LL +D + N T H + + +
Sbjct: 15 RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVR 74
Query: 118 GVASFFQVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQD 177
F + T + IR + F+ + I+ +D
Sbjct: 75 PPIEFIRQYLAQWTSNKILYDIRKKLYNHLQALSARFYANNQVGQVISRVINDVEQ-TKD 133
Query: 178 AIGEKVGKFIQFGASFIGGFLIAFFKGWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQ 237
I + + I I FF LTL L P ++ V + L ++
Sbjct: 134 FILTGLMNIWLDCITIIIALSIMFFLDVKLTLAALFIFPFYILTVYVFFGRLRKLTRERS 193
Query: 238 AADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEGLATGLGLGASVF 297
A + + + + I V SF E + ++K +++ A
Sbjct: 194 QALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALKHTRWNAYSFAAINT 253
Query: 298 IIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFK 357
+ + + GA L + + G + + + + + L + + A+ +
Sbjct: 254 VTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDR 313
Query: 358 FFEAINRKPE 367
F+ I+ +
Sbjct: 314 VFQLIDEDYD 323
|
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 1236 | |||
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 100.0 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d3b60a2 | 319 | Multidrug resistance ABC transporter MsbA, N-termi | 99.94 | |
| d2hyda2 | 323 | Putative multidrug export ATP-binding/permease pro | 99.93 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.77 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.74 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.64 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.64 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.44 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.25 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.21 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.14 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.01 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.93 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.77 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 98.7 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.36 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.08 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 97.01 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 96.97 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.86 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.82 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 96.64 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.62 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 96.55 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 96.55 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.51 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 96.47 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.46 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 96.41 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 96.4 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.38 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 96.35 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.34 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.34 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 96.31 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 96.26 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 96.22 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.21 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.14 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 96.14 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 96.14 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 96.08 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 96.06 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 96.06 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 96.05 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 96.03 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.93 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 95.88 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 95.87 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.86 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.84 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 95.83 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.79 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 95.77 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.75 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 95.75 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 95.74 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 95.74 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 95.71 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 95.71 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.7 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.65 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.64 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 95.63 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 95.62 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.61 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 95.6 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 95.58 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.58 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.58 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.53 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.52 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 95.5 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 95.45 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.4 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 95.3 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 95.29 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.29 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 95.28 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 95.27 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 95.21 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.17 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 95.17 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 95.14 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 95.13 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 95.12 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 95.11 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.1 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 95.09 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 95.06 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 95.06 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 95.06 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.03 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.02 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.98 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.97 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 94.95 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.94 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.91 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 94.91 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.9 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 94.79 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.75 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.75 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 94.7 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 94.7 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 94.68 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 94.64 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 94.63 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.6 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 94.6 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.59 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 94.59 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 94.58 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 94.57 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 94.55 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 94.44 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 94.43 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.42 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 94.4 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 94.34 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 94.33 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 94.33 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 94.29 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 94.27 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 94.25 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 94.23 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 94.18 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 94.17 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 94.17 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 94.14 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 94.13 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 94.12 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.11 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 94.1 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 94.07 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 94.06 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 94.05 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.04 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 94.02 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 94.0 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.99 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 93.98 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 93.96 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 93.92 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.88 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 93.85 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.84 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.83 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.78 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 93.78 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.76 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 93.76 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 93.66 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.66 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 93.63 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 93.59 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 93.58 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.56 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 93.56 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 93.55 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 93.54 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 93.54 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.52 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 93.51 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 93.5 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 93.5 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 93.49 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.47 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 93.44 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 93.39 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.39 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 93.39 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 93.38 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 93.36 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 93.32 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 93.24 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 93.22 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 93.2 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 93.2 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 93.2 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 93.16 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 93.13 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 93.13 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 93.09 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 93.08 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 93.08 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 93.06 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 93.02 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 92.94 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 92.92 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.89 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 92.85 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.85 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 92.82 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 92.8 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 92.76 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 92.73 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 92.7 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.64 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 92.63 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 92.6 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 92.56 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 92.54 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 92.52 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 92.49 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 92.48 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 92.46 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 92.42 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.39 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 92.38 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 92.29 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 92.28 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 92.25 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 92.23 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 92.18 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.1 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 92.08 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 92.06 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 92.05 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 92.05 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 91.92 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 91.88 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 91.87 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 91.87 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 91.85 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.84 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 91.79 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 91.75 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 91.74 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.73 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 91.72 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 91.71 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 91.68 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 91.64 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.64 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 91.54 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 91.49 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 91.47 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 91.38 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 91.36 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 91.33 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 91.33 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 91.32 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 91.26 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 91.26 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 91.23 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 91.21 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 91.12 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 91.03 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 91.02 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 90.99 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 90.99 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 90.99 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.98 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.98 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 90.95 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 90.94 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 90.92 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 90.9 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 90.89 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 90.87 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 90.86 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 90.85 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 90.85 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 90.82 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 90.81 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 90.76 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 90.73 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 90.68 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 90.67 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 90.65 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 90.61 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 90.58 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.57 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 90.57 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.55 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 90.53 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 90.47 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 90.47 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 90.39 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 90.39 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 90.37 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 90.36 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 90.31 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 90.31 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 90.27 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 90.23 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 90.21 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 90.21 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 90.13 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 90.12 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 90.08 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 90.06 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 89.97 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 89.95 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 89.93 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.88 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 89.82 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 89.81 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 89.8 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 89.79 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 89.77 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 89.76 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 89.73 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 89.72 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 89.7 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 89.7 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 89.67 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 89.56 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 89.55 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 89.51 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 89.43 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 89.42 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 89.42 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 89.39 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 89.38 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 89.36 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 89.35 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 89.31 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 89.27 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 89.27 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 89.25 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.98 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 88.94 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 88.92 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 88.88 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 88.79 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 88.57 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 88.54 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 88.53 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 88.51 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 88.5 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 88.37 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 88.36 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 88.32 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 88.28 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 88.28 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 88.23 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 88.14 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 88.13 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 88.08 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 88.06 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 88.02 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 87.97 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 87.95 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 87.94 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 87.94 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 87.92 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 87.87 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 87.79 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 87.75 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 87.71 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 87.53 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 87.37 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 87.34 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 87.34 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 87.26 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 87.23 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 87.22 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 87.2 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.15 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 87.13 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 86.97 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 86.97 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 86.94 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 86.83 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 86.82 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 86.61 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 86.4 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 86.35 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 86.24 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 86.16 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 86.15 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 86.13 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 86.01 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 85.95 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 85.89 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 85.87 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 85.81 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 85.68 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 85.64 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.62 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 85.54 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 85.21 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 84.68 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 84.68 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 84.66 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 84.42 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 84.42 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 83.81 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 83.69 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 83.5 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.45 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 83.29 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 83.19 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 82.78 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 82.78 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 82.7 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 82.59 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 82.27 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 81.55 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 81.49 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 81.46 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 80.48 |
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.3e-66 Score=563.81 Aligned_cols=240 Identities=46% Similarity=0.751 Sum_probs=232.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
+|+|+||||+|+++ ++++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 48999999999753 46799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 464 GLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 464 ~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
+||||+|++|++||+|||.++.+..++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhh
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~ 623 (1236)
|||||||||+||+.+++.|++.|+++.+++|+|+||||+++++.||||+||++|+|+++|+|+||++++++.|+++|+.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999899999999999999999999999999999999999999988778999999876
Q ss_pred h
Q 040099 624 E 624 (1236)
Q Consensus 624 ~ 624 (1236)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 3
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1e-66 Score=568.72 Aligned_cols=245 Identities=51% Similarity=0.809 Sum_probs=235.7
Q ss_pred CCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH
Q 040099 378 LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 378 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 457 (1236)
....+|.|+|+||+|+|+++ ++++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+
T Consensus 10 l~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 88 (255)
T d2hyda1 10 IEIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTG 88 (255)
T ss_dssp CCCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHH
T ss_pred CCCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHH
Confidence 34456889999999999854 46899999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
++|++|+||+|+|++|++||+|||++|.+..++++++++++.+++++++.++|+|++|.+|++|.+|||||||||+||||
T Consensus 89 ~lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARa 168 (255)
T d2hyda1 89 SLRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARI 168 (255)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHH
T ss_pred HhhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
|+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||++.++.||||++|++|+|++.|+|+||+++ ++.|+
T Consensus 169 l~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~ 247 (255)
T d2hyda1 169 FLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYE 247 (255)
T ss_dssp HHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHH
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHH
Confidence 99999999999999999999999999999999889999999999999999999999999999999999999998 79999
Q ss_pred hhHHhhh
Q 040099 618 RLIRLQE 624 (1236)
Q Consensus 618 ~~~~~~~ 624 (1236)
++|+.|.
T Consensus 248 ~l~~~Q~ 254 (255)
T d2hyda1 248 HLYSIQN 254 (255)
T ss_dssp HHHTTTT
T ss_pred HHHHHcC
Confidence 9998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.8e-66 Score=559.38 Aligned_cols=225 Identities=46% Similarity=0.796 Sum_probs=216.7
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
+|+|+||+|+|++. .+++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|+|||+|+++++.+++|++|
T Consensus 1 eI~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~lr~~i 79 (241)
T d2pmka1 1 DITFRNIRFRYKPD-SPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADPNWLRRQV 79 (241)
T ss_dssp EEEEEEEEEESSTT-SCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCHHHHHHHE
T ss_pred CeEEEEEEEEeCCC-CcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccchhhhhceE
Confidence 58999999999754 45799999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1090 GVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1090 ~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
+||||||++|++||+|||. +.+++++++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~~v~Q~~~lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t~i~~~g~~LSGGq~QRvalARal~~~p~ 159 (241)
T d2pmka1 80 GVVLQDNVLLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPK 159 (241)
T ss_dssp EEECSSCCCTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGSBCSTTTTCCCHHHHHHHHHHHHHTTCCS
T ss_pred EEEecccccCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhhhcCCCCCccCHHHHHHHhhhhhhhcccc
Confidence 9999999999999999993 6688889999999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.|.+.|++..+++|+|+||||+++++.||||+||++|+|+|+|+|+||++++++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~Iv~~G~~~ell~~~~~~y~~l~~~Q 239 (241)
T d2pmka1 160 ILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVKNADRIIVMEKGKIVEQGKHKELLSEPESLYSYLYQLQ 239 (241)
T ss_dssp EEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGTTSSEEEEEETTEEEEEECHHHHHHSTTCHHHHHHHHH
T ss_pred hhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999998789999999887
Q ss_pred C
Q 040099 1235 T 1235 (1236)
Q Consensus 1235 ~ 1235 (1236)
.
T Consensus 240 ~ 240 (241)
T d2pmka1 240 S 240 (241)
T ss_dssp C
T ss_pred c
Confidence 5
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=1.1e-65 Score=560.66 Aligned_cols=229 Identities=52% Similarity=0.817 Sum_probs=219.9
Q ss_pred CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH
Q 040099 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1005 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~ 1084 (1236)
+..+|+|+|+||+|+|+++ ..++|+||||+|++||++|||||||||||||+++|.|+|+|++|+|.+||.|+++++.++
T Consensus 11 ~~~~g~I~~~nvsf~Y~~~-~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 89 (255)
T d2hyda1 11 EIKQGRIDIDHVSFQYNDN-EAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLTGS 89 (255)
T ss_dssp CCCSCCEEEEEEEECSCSS-SCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCHHH
T ss_pred CCCCCEEEEEEEEEEeCCC-CCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCHHH
Confidence 3356899999999999865 357999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEcCCCCCChhhHHHHHH---------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1085 LRQQMGVVSQEPVLFSDTIRANIA---------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~gTIreNL~---------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
+|++|+||||+|.+|++||+|||. +.+++++++..+|+||||.++++|.+|||||||||||||||
T Consensus 90 lr~~i~~v~Q~~~lf~~Ti~eNi~~g~~~~~~~~~~~al~~~~l~~~i~~lp~gl~t~i~~~g~~LSgGq~QRi~iARal 169 (255)
T d2hyda1 90 LRNQIGLVQQDNILFSDTVKENILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIF 169 (255)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHGGGCSSCCHHHHHHHHHHTTCHHHHHTSTTGGGCBCCGGGTTSCHHHHHHHHHHHHH
T ss_pred hhheeeeeeccccCCCCCHHHHHhccCcCCCHHHHHHHHHHhCCHHHHHhccccccchhcCCCCCcCHHHHHHHHHHHHH
Confidence 999999999999999999999994 67788999999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
+++|+|||||||||+||++|++.|.+.|++..+++|+|+||||+++++.||||+||++|+|+|.|+|+||+++ ++.|++
T Consensus 170 ~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~~~~D~ii~l~~G~iv~~G~~~eLl~~-~~~y~~ 248 (255)
T d2hyda1 170 LNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTITHADKIVVIENGHIVETGTHRELIAK-QGAYEH 248 (255)
T ss_dssp HHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTTTCSEEEEEETTEEEEEECHHHHHHT-TSHHHH
T ss_pred hcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999997 899999
Q ss_pred hhhccC
Q 040099 1230 LIEPHT 1235 (1236)
Q Consensus 1230 L~~~q~ 1235 (1236)
||+.|+
T Consensus 249 l~~~Q~ 254 (255)
T d2hyda1 249 LYSIQN 254 (255)
T ss_dssp HHTTTT
T ss_pred HHHHcC
Confidence 999885
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=3.3e-65 Score=558.22 Aligned_cols=245 Identities=50% Similarity=0.812 Sum_probs=234.4
Q ss_pred CCCCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHH
Q 040099 378 LDDIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLK 457 (1236)
Q Consensus 378 ~~~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~ 457 (1236)
.+...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+
T Consensus 7 ~~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~ 85 (253)
T d3b60a1 7 IDRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLA 85 (253)
T ss_dssp CSCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHH
T ss_pred cCCCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhh
Confidence 34456889999999999854 46799999999999999999999999999999999999999999999999999999999
Q ss_pred HHhcceEEEccCCCCCchhHHHHHhcCCC-CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHH
Q 040099 458 WIREKIGLVSQEPVLLSSSIRDNIAYGKT-HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIAR 536 (1236)
Q Consensus 458 ~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~-~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiAR 536 (1236)
++|++|+||+|+|++|++|+++|+.++.+ ..++++++++++.+++++++..+|+|++|.+|++|.+|||||||||+|||
T Consensus 86 ~~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 86 SLRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HHHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHH
T ss_pred hhhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHH
Confidence 99999999999999999999999999974 56889999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchh
Q 040099 537 AMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 537 al~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
||+++|+|||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||+|+||++|+|+++|+|+||+++ ++.|
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y 244 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVY 244 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSH
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999999999889999999999999999999999999999999999999998 7999
Q ss_pred hhhHHhhh
Q 040099 617 NRLIRLQE 624 (1236)
Q Consensus 617 ~~~~~~~~ 624 (1236)
+++|+.|.
T Consensus 245 ~~l~~~Q~ 252 (253)
T d3b60a1 245 AQLHKMQF 252 (253)
T ss_dssp HHHHHHTC
T ss_pred HHHHHHcc
Confidence 99999874
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.4e-64 Score=552.58 Aligned_cols=241 Identities=43% Similarity=0.742 Sum_probs=229.5
Q ss_pred CCCCcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH
Q 040099 380 DIRGDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI 459 (1236)
Q Consensus 380 ~~~~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~ 459 (1236)
..+|.|+|+||||+||++++.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 45678999999999987666789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 460 REKIGLVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
|++|+||+|+|++|++||+|||.+|. +..+.+++.++++.+++++++..+|+|++|.++++|.+|||||||||+|||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999999984 45678899999999999999999999999999999999999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchh
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
+++|+|||||||||+||+.++..|++.|+++.+ ++|+|+||||++.++.||||+||++|+|+++|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999998754 7999999999999999999999999999999999999998 7999
Q ss_pred hhhHH
Q 040099 617 NRLIR 621 (1236)
Q Consensus 617 ~~~~~ 621 (1236)
++||+
T Consensus 246 ~~l~~ 250 (251)
T d1jj7a_ 246 WAMVQ 250 (251)
T ss_dssp HHHHC
T ss_pred HHHhc
Confidence 99875
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.1e-64 Score=554.13 Aligned_cols=229 Identities=51% Similarity=0.840 Sum_probs=219.2
Q ss_pred CCccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH
Q 040099 1005 ENVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW 1084 (1236)
Q Consensus 1005 ~~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~ 1084 (1236)
+...|+|+|+||+|+|+++ +.++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|++||+|+++++.+.
T Consensus 8 ~~~~g~I~~~nvsf~Y~~~-~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~ 86 (253)
T d3b60a1 8 DRATGDLEFRNVTFTYPGR-EVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTLAS 86 (253)
T ss_dssp SCCCCCEEEEEEEECSSSS-SCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCHHH
T ss_pred CCCceEEEEEEEEEEeCCC-CCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhhhh
Confidence 3456899999999999865 457999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHH
Q 040099 1085 LRQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1085 lR~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARA 1148 (1236)
+|++|+||||+|.+|++|+++|+. +.+++++++..+|+||||.++++|.+||||||||||||||
T Consensus 87 ~r~~i~~v~Q~~~l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~~~~~~~~LSGGqkQRvaiARa 166 (253)
T d3b60a1 87 LRNQVALVSQNVHLFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTIIGENGVLLSGGQRQRIAIARA 166 (253)
T ss_dssp HHHTEEEECSSCCCCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSBCCTTSCSSCHHHHHHHHHHHH
T ss_pred hhheEEEEeeccccCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhhhcCCCCCcCHHHHHHHHHHHH
Confidence 999999999999999999999984 5677889999999999999999999999999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|+++|+|||||||||+||+++++.|++.|+++.+++|+|+||||+++++.||+|+||++|+|+|+|+|+||+++ ++.|+
T Consensus 167 l~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~v~vl~~G~Iv~~G~~~eLl~~-~~~y~ 245 (253)
T d3b60a1 167 LLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIEQADEIVVVEDGIIVERGTHSELLAQ-HGVYA 245 (253)
T ss_dssp HHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTTTCSEEEEEETTEEEEEECHHHHHHH-TSSHH
T ss_pred HhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHHH
Confidence 99999999999999999999999999999999899999999999999999999999999999999999999997 99999
Q ss_pred HhhhccC
Q 040099 1229 SLIEPHT 1235 (1236)
Q Consensus 1229 ~L~~~q~ 1235 (1236)
+||+.|-
T Consensus 246 ~l~~~Q~ 252 (253)
T d3b60a1 246 QLHKMQF 252 (253)
T ss_dssp HHHHHTC
T ss_pred HHHHHcc
Confidence 9999873
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=1.1e-64 Score=553.47 Aligned_cols=227 Identities=43% Similarity=0.730 Sum_probs=216.6
Q ss_pred CccccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH
Q 040099 1006 NVMGEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL 1085 (1236)
Q Consensus 1006 ~~~g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l 1085 (1236)
..+|.|+|+||+|+||++++.++|+||||+|++||++|||||||||||||+++|.|+|+|++|+|++||+|+++++.+++
T Consensus 7 ~~~g~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~~~~ 86 (251)
T d1jj7a_ 7 HLEGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYL 86 (251)
T ss_dssp CCCCCEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCHHHH
T ss_pred cccceEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhhHHH
Confidence 46789999999999998777789999999999999999999999999999999999999999999999999999999999
Q ss_pred hcceEEEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH
Q 040099 1086 RQQMGVVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI 1149 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL 1149 (1236)
|++|+||||+|.+|++||+||+. +.+++++++..+|+|++|.++++|.+||||||||+||||||
T Consensus 87 r~~i~~v~Q~~~lf~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~i~~~~~~LSGGqkQRvaiARal 166 (251)
T d1jj7a_ 87 HRQVAAVGQEPQVFGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARAL 166 (251)
T ss_dssp HHHEEEECSSCCCCSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCBCCSSCSSSCHHHHHHHHHHHHH
T ss_pred HHHhhhccccccccCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhhHhccCccCChhHceEEEEeecc
Confidence 99999999999999999999995 45677889999999999999999999999999999999999
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
+++|+|||||||||+||+.++..|++.|++..+ ++|+|+||||+++++.||||+||++|+|+|+|+|+||+++ ++.|
T Consensus 167 ~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~~~aDrI~vl~~G~iv~~Gt~~eLl~~-~~~y 245 (251)
T d1jj7a_ 167 IRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVEQADHILFLEGGAIREGGTHQQLMEK-KGCY 245 (251)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-TSHH
T ss_pred ccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-CcHH
Confidence 999999999999999999999999999988754 7899999999999999999999999999999999999997 8999
Q ss_pred HHhhhc
Q 040099 1228 TSLIEP 1233 (1236)
Q Consensus 1228 ~~L~~~ 1233 (1236)
++|++.
T Consensus 246 ~~l~~A 251 (251)
T d1jj7a_ 246 WAMVQA 251 (251)
T ss_dssp HHHHCC
T ss_pred HHHhcC
Confidence 999863
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1e-64 Score=550.74 Aligned_cols=223 Identities=45% Similarity=0.754 Sum_probs=214.5
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+|+|++. +++|+||||+|+|||++|||||||||||||+++|+|+|+|++|+|++||.|+++++.+.+|++|+
T Consensus 2 le~knvsf~Y~~~--~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDDS--EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSSS--SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCCC--CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 7899999999754 36999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEcCCCCCChhhHHHHHH----------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1091 VVSQEPVLFSDTIRANIA----------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1091 ~V~Qdp~LF~gTIreNL~----------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
||||||.+|++||+||+. +.+++.+++..+|+|++|.++++|.+|||||||||||||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999983 5577788899999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhhhcc
Q 040099 1155 ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIEPH 1234 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~~q 1234 (1236)
|||||||||+||+.+++.|++.|++..+++|+|+||||+++++.||||+||++|+|+|+|+|+||+++ ++.|++|++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999999999999999999999899999999999999999999999999999999999999997 99999999998
Q ss_pred CC
Q 040099 1235 TT 1236 (1236)
Q Consensus 1235 ~~ 1236 (1236)
.|
T Consensus 239 ~~ 240 (242)
T d1mv5a_ 239 LT 240 (242)
T ss_dssp CC
T ss_pred hh
Confidence 65
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=1.7e-64 Score=548.88 Aligned_cols=237 Identities=43% Similarity=0.737 Sum_probs=227.3
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||||+|++ ++++|+||||+|++||++|||||||||||||+++|+|+|+|++|+|.+||+|+++++.+++|++||
T Consensus 2 le~knvsf~Y~~--~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~~~~r~~i~ 79 (242)
T d1mv5a_ 2 LSARHVDFAYDD--SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISLENWRSQIG 79 (242)
T ss_dssp EEEEEEEECSSS--SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSCSCCTTTCC
T ss_pred EEEEEEEEECCC--CCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccHHHHHhheE
Confidence 799999999974 357999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEccCCCCCchhHHHHHhcCC-CCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 465 LVSQEPVLLSSSIRDNIAYGK-THATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 465 ~v~Q~~~l~~~ti~~ni~~g~-~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
||||+|++|++||+||+.++. +..++++++++++.+++.+++..+|+|++|.+|++|.+|||||||||+|||||+++|+
T Consensus 80 ~v~Q~~~lf~~ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqkQRv~iARal~~~p~ 159 (242)
T d1mv5a_ 80 FVSQDSAIMAGTIRENLTYGLEGDYTDEDLWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPK 159 (242)
T ss_dssp EECCSSCCCCEEHHHHTTSCTTSCSCHHHHHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHHHHHHHHHHHHHCCS
T ss_pred EEccccccCCcchhhheecccccccchhhHHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHHHHHHHHHHHhcCCC
Confidence 999999999999999999984 4578899999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhHHhh
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLIRLQ 623 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~~~~ 623 (1236)
|||||||||+||+.+++.|++.|+++.+++|+|+||||++.++.||||+||++|+|+++|+|+||+++ ++.|+++++.|
T Consensus 160 ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~~D~i~vl~~G~iv~~G~~~eLl~~-~~~y~~l~~~Q 238 (242)
T d1mv5a_ 160 ILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIVDADKIYFIEKGQITGSGKHNELVAT-HPLYAKYVSEQ 238 (242)
T ss_dssp EEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHHHCSEEEEEETTEECCCSCHHHHHHH-CHHHHHHHHCC
T ss_pred EEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHhCCEEEEEECCEEEEECCHHHHHhC-ChHHHHHHHHH
Confidence 99999999999999999999999999889999999999999999999999999999999999999988 79999999765
Q ss_pred h
Q 040099 624 E 624 (1236)
Q Consensus 624 ~ 624 (1236)
.
T Consensus 239 ~ 239 (242)
T d1mv5a_ 239 L 239 (242)
T ss_dssp C
T ss_pred h
Confidence 3
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.5e-54 Score=476.46 Aligned_cols=218 Identities=27% Similarity=0.456 Sum_probs=197.5
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
..|+|+|++|. ++|||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +
T Consensus 37 ~~i~~~~~~~~-----g~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLV-----GNPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHT-----TCEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCC-----CCeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 45666666543 24799999999999999999999999999999999999999999999998 6
Q ss_pred eEEEccCCCCCchhHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCC
Q 040099 463 IGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDP 542 (1236)
Q Consensus 463 i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p 542 (1236)
|+||+|++++|++||+|||.+|.. .++.+++++++.+++.+++..+|++++|.++++|.+|||||||||+|||||+++|
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~-~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p 177 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVS-YDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDA 177 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSC-CCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCC
T ss_pred EEEEeccccccCceeecccccccc-ccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCc
Confidence 999999999999999999999864 5778899999999999999999999999999999999999999999999999999
Q ss_pred CEEEEeCcCCCCCHHHHHHHHHH-HHHHccCceEEEEecCchhHhhcCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 543 RILLLDEATSALDSESGRMVQEA-LDRVMINRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 543 ~ililDE~ts~lD~~~~~~i~~~-l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+|||||||||+||+.++..+++. +..+.+++|+|+||||++.++.||||++|++|+|++.|+|+||+.. ++.|.+.+
T Consensus 178 ~illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 178 DLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp SEEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred cchhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 99999999999999999998876 4555678999999999999999999999999999999999999876 56676544
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.7e-52 Score=444.01 Aligned_cols=215 Identities=29% Similarity=0.531 Sum_probs=190.8
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++|||++|++ .+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+|+.+.+.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999952 489999999999999999999999999999999999999999999999999987765 67899
Q ss_pred EEccCCCCCch-hHHHHHhcCCC---CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKT---HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~---~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
||||++.||+. ||+||+.|+.. ....+++.++++..++.++.+ ..+.+||||||||++|||||+.
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-----------~~~~~LSGG~~QRvaiAraL~~ 144 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDLKIEHLLD-----------RNPLTLSGGEQQRVALARALVT 144 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHTTCTTTTT-----------SCGGGSCHHHHHHHHHHHHTTS
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHhcchhhHh-----------CChhhCCHHHhcchhhhhhhhc
Confidence 99999999965 99999998631 234667777777776655444 3445899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAY 616 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y 616 (1236)
+|++||||||||+||+.+...+++.|+++. .|.|+|+|||+++.+.. ||||++|++|+|+++|+++|++++|...|
T Consensus 145 ~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 145 NPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp CCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred cCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999999999999974 37899999999999876 99999999999999999999998765444
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=4.4e-52 Score=445.26 Aligned_cols=223 Identities=26% Similarity=0.443 Sum_probs=186.7
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|++++|+ +..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+|+...+.. |++|
T Consensus 6 ~I~v~nlsk~yg---~~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFG---NFTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEEC---CEEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 599999999995 35799999999999999999999999999999999999999999999999999888764 5689
Q ss_pred EEEccCCCCCc-hhHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 464 GLVSQEPVLLS-SSIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 464 ~~v~Q~~~l~~-~ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
|||||++.||+ .||+||+.|+.. ..+.+++.+.+ .+.++.+ |++......+.+||||||||++|||||+.
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~ 153 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRV-----RWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVV 153 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHH-----HHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTT
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHH-----HHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhcc
Confidence 99999999996 599999999753 23444433322 1223333 44445556667999999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-c-CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-I-NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYN 617 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~-~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~ 617 (1236)
+|+|||||||||+||+.+...+++.|+++. + |+|+|+|||+++.+.. ||||++|++|+|+++|+++|+.++|...|.
T Consensus 154 ~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~ 233 (239)
T d1v43a3 154 EPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFV 233 (239)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHH
T ss_pred CCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999999999999999999999999984 3 8999999999999866 999999999999999999999988766554
Q ss_pred h
Q 040099 618 R 618 (1236)
Q Consensus 618 ~ 618 (1236)
+
T Consensus 234 ~ 234 (239)
T d1v43a3 234 A 234 (239)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-52 Score=446.99 Aligned_cols=217 Identities=28% Similarity=0.484 Sum_probs=163.2
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
|+++||+|+|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++.+.+.. |++||
T Consensus 1 Iev~nv~k~yg---~~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWG---EVVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEEC---CEEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 78999999995 35799999999999999999999999999999999999999999999999999887754 57899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCC--C----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHH
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHA--T----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARA 537 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~--~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARa 537 (1236)
||||++.||+. ||+||+.++.... + ++++.++++..++.++..+.| .+||||||||++||||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~~l~~~~~~~~-----------~~LSGGqkQRvaiAra 144 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVLQLAHLLDRKP-----------KALSGGQRQRVAIGRT 144 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC--------------------------------CHHHH
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCChhhhhCCh-----------hhCCHHHHHHHHHHHH
Confidence 99999999965 9999999874321 1 244666666666666555544 5899999999999999
Q ss_pred hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccc
Q 040099 538 MIKDPRILLLDEATSALDSESGRMVQEALDRVM--INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYG 614 (1236)
Q Consensus 538 l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~ 614 (1236)
|+.+|++||||||||+||+.+...+++.|+++. .|+|+|+|||+++.+.. ||||++|++|+|++.|+++|++++|..
T Consensus 145 L~~~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~ 224 (232)
T d2awna2 145 LVAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPAD 224 (232)
T ss_dssp HHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSB
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCC
Confidence 999999999999999999999999999999874 48999999999999876 999999999999999999999988765
Q ss_pred hhh
Q 040099 615 AYN 617 (1236)
Q Consensus 615 ~y~ 617 (1236)
.|.
T Consensus 225 ~~v 227 (232)
T d2awna2 225 RFV 227 (232)
T ss_dssp HHH
T ss_pred HHH
Confidence 553
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.6e-52 Score=448.02 Aligned_cols=222 Identities=33% Similarity=0.512 Sum_probs=192.6
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH---Hh
Q 040099 385 IELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW---IR 460 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~---~r 460 (1236)
|+++||+++|+.+.. ..||+||||+|++||++||+||||||||||+++|+|+.+|++|+|.++|+|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975322 25899999999999999999999999999999999999999999999999998887654 56
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCC--CCCC----HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGK--THAT----KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~--~~~~----~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
++||||||++.+|+. ||+|||.++. ...+ ++++.++++.+++.++. ...+.+||||||||++
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~vgL~~~~-----------~~~~~~LSGG~~QRva 150 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLVGLGDKH-----------DSYPSNLSGGQKQRVA 150 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHHSTTTTT-----------SSCBSCCCHHHHHHHH
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHcCCchhh-----------hCChhhCCHHHHHHHH
Confidence 789999999999975 9999999852 1122 34566666666655443 3445589999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|++|||||||++||+.+...|++.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iAraL~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~ 230 (240)
T d3dhwc1 151 IARALASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFS 230 (240)
T ss_dssp HHHHHHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTC
T ss_pred HhhhhccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHh
Confidence 99999999999999999999999999999999998843 8999999999999876 99999999999999999999998
Q ss_pred cccchhh
Q 040099 611 NPYGAYN 617 (1236)
Q Consensus 611 ~~~~~y~ 617 (1236)
+|...|.
T Consensus 231 ~P~~~~t 237 (240)
T d3dhwc1 231 HPKTPLA 237 (240)
T ss_dssp SSCCTTT
T ss_pred CCCChHH
Confidence 8766664
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=1.9e-52 Score=448.25 Aligned_cols=222 Identities=31% Similarity=0.435 Sum_probs=192.0
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC---HHHHh
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ---LKWIR 460 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~---~~~~r 460 (1236)
.|+++||+++|+.+ +..+|+||||+|++||+++|+||||||||||+++|.|+++|++|+|+++|+++...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 48999999999632 457999999999999999999999999999999999999999999999999997654 34457
Q ss_pred cceEEEccCCCCCch-hHHHHHhcCCC--CCCHH----HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHH
Q 040099 461 EKIGLVSQEPVLLSS-SIRDNIAYGKT--HATKE----EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVA 533 (1236)
Q Consensus 461 ~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~----~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRia 533 (1236)
++||||||++.||+. ||+|||.++.. ..+.+ ++.++++.+++.++. ...+.+||||||||++
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~gL~~~~-----------~~~p~~LSGGqkQRva 150 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKILDIHHVL-----------NHFPRELSGAQQQRVA 150 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHTTCGGGT-----------TSCGGGSCHHHHHHHH
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhcChHhhh-----------hCChhhCCHHHHhHHH
Confidence 889999999999976 99999999743 23333 355555555554444 4445589999999999
Q ss_pred HHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccc
Q 040099 534 IARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLE 610 (1236)
Q Consensus 534 iARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~ 610 (1236)
|||||+.+|+|||||||||+||+.+...+++.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++
T Consensus 151 iARaL~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~ 230 (242)
T d1oxxk2 151 LARALVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYD 230 (242)
T ss_dssp HHHHHTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHH
T ss_pred HHhHHhhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHh
Confidence 99999999999999999999999999999999999843 8899999999999865 99999999999999999999998
Q ss_pred cccchhh
Q 040099 611 NPYGAYN 617 (1236)
Q Consensus 611 ~~~~~y~ 617 (1236)
+|...|.
T Consensus 231 ~P~~~~~ 237 (242)
T d1oxxk2 231 NPVSIQV 237 (242)
T ss_dssp SCSSHHH
T ss_pred CCCCHHH
Confidence 8765553
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=4.2e-52 Score=446.33 Aligned_cols=220 Identities=25% Similarity=0.440 Sum_probs=191.3
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHH----H
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKW----I 459 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~----~ 459 (1236)
.|+++||+++|+ +.++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.+.+... .
T Consensus 3 ~i~v~nl~k~yg---~~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFG---EVTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 489999999995 357999999999999999999999999999999999999999999999999997665433 3
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCCC--CCCH----HHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGKT--HATK----EEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRV 532 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~----~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRi 532 (1236)
|++||||||++.||+. ||+||+.++.. ..+. +++.++++.+++.++.. ..+.+||||||||+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~~l~~~~~-----------~~p~~LSGGqkQRv 148 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELLGLTELLN-----------RKPRELSGGQRQRV 148 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHTCGGGTT-----------CCGGGSCHHHHHHH
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHcCChhHhc-----------CChhhCCHHHHHHH
Confidence 6789999999999976 99999998631 2233 33556666666554443 44468999999999
Q ss_pred HHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccc
Q 040099 533 AIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELL 609 (1236)
Q Consensus 533 aiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~ 609 (1236)
+|||||+.+|+||||||||++||+.+...+++.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|++
T Consensus 149 ~IAraL~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~ 228 (240)
T d1g2912 149 ALGRAIVRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVY 228 (240)
T ss_dssp HHHHHHHTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHH
T ss_pred HHHHHHhcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHH
Confidence 999999999999999999999999999999999998843 8999999999999876 9999999999999999999999
Q ss_pred ccccchhh
Q 040099 610 ENPYGAYN 617 (1236)
Q Consensus 610 ~~~~~~y~ 617 (1236)
.+|...|.
T Consensus 229 ~~P~~~~~ 236 (240)
T d1g2912 229 DKPANTFV 236 (240)
T ss_dssp HSCSBHHH
T ss_pred hCCCCHHH
Confidence 88766664
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.7e-52 Score=464.50 Aligned_cols=204 Identities=28% Similarity=0.465 Sum_probs=183.4
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
+.|.|+|++|.+ .|||+||||+|++||++|||||||||||||+++|+|+++|++|+|.+|| +
T Consensus 37 ~~i~~~~~~~~g-----~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-------------~ 98 (281)
T d1r0wa_ 37 NNVSFSHLCLVG-----NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-------------R 98 (281)
T ss_dssp ---CHHHHHHTT-----CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-------------C
T ss_pred CcEEEEEcCCCC-----CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-------------E
Confidence 456666666532 3699999999999999999999999999999999999999999999998 5
Q ss_pred eEEEcCCCCCChhhHHHHHH--------------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCC
Q 040099 1089 MGVVSQEPVLFSDTIRANIA--------------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPK 1154 (1236)
Q Consensus 1089 i~~V~Qdp~LF~gTIreNL~--------------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ 1154 (1236)
|+||||+|.+|++||+|||. +.+++..++..+|+++++.++++|.+||||||||+||||||+++|+
T Consensus 99 i~~v~Q~~~l~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~ 178 (281)
T d1r0wa_ 99 VSFCSQFSWIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDAD 178 (281)
T ss_dssp EEEECSSCCCCSEEHHHHHTTTSCCCHHHHHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCS
T ss_pred EEEEeccccccCceeeccccccccccchHHHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCcc
Confidence 89999999999999999984 4556677889999999999999999999999999999999999999
Q ss_pred EEEEecCCCCCCHHHHHHHHHH-HHHHcCCCeEEEEecCchhhhhcCEEEEEeCCEEEEecChhHHhhccCcccHHhh
Q 040099 1155 ILLLDEATSALDIESERVVQDA-LDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSHESLISTKNGIYTSLI 1231 (1236)
Q Consensus 1155 ILlLDEaTSaLD~~te~~I~~~-L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~ 1231 (1236)
|||||||||+||+.+++.|.+. +....+++|+|+||||++.++.||||+||++|+|+++|||+||++. ++.|++.+
T Consensus 179 illLDEPts~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l~~aDrI~vl~~G~i~~~Gt~~eL~~~-~~~~~~~~ 255 (281)
T d1r0wa_ 179 LYLLDSPFGYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHLRKADKILILHQGSSYFYGTFSELQSL-RPDFSSKL 255 (281)
T ss_dssp EEEEESCCCSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHHHTCSEEEEEETTEEEEEECHHHHHHH-CHHHHHHH
T ss_pred chhhcCccccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHHHhCCEEEEEECCEEEEECCHHHHhcc-CcHHHHHH
Confidence 9999999999999999998876 4555578999999999999999999999999999999999999986 66676654
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.8e-51 Score=439.17 Aligned_cols=213 Identities=33% Similarity=0.491 Sum_probs=178.4
Q ss_pred EEEEeEEEECCCCCC-CccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHH----
Q 040099 385 IELKDVNFSYPARPD-EQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWI---- 459 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~-~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~---- 459 (1236)
|+++||+|+|+.+.. ..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++..++.+++
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 789999999974321 247999999999999999999999999999999999999999999999999999987664
Q ss_pred hcceEEEccCCCCCch-hHHHHHhcCC-----CCCCHHHHH-HHHHHhccHHHHHhCCCCccc-cccCCCCCCChHHHHH
Q 040099 460 REKIGLVSQEPVLLSS-SIRDNIAYGK-----THATKEEIQ-AAAEAANASHFIKNLPQGLDT-NVGEHGIQLSGGQKQR 531 (1236)
Q Consensus 460 r~~i~~v~Q~~~l~~~-ti~~ni~~g~-----~~~~~~~~~-~~~~~~~~~~~i~~l~~g~~t-~~g~~g~~LSgGqkqR 531 (1236)
|++||||+|++.||+. ||+||+.++. +..+.++.. ++.+ .+..+ |+.. .....+.+||||||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~------~l~~~--~L~~~~~~~~p~~LSGGqkQR 153 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALE------CLKMA--ELEERFANHKPNQLSGGQQQR 153 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHH------HHHHT--TCCGGGTTCCGGGSCHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHH------HHHhh--chhhhhhcCChhhCCHHHHHH
Confidence 4579999999999865 9999999852 233433322 2222 12211 3322 2344556899999999
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhhcCeEEEEECCEEEEEeCc
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRNANIIAVIQQGKIVEKGTH 605 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~~ 605 (1236)
|+|||||+.+|+|||||||||+||+.++..|++.|+++.+ |.|+|+|||+++.++.||||++|++|+|+++|+.
T Consensus 154 vaIAraL~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 154 VAIARALANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred HHHHhhhhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 9999999999999999999999999999999999999843 7899999999998888999999999999999864
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=3.1e-50 Score=430.89 Aligned_cols=213 Identities=29% Similarity=0.440 Sum_probs=182.9
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++||+++|++ ..||+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+++.+.. |++|
T Consensus 6 ~I~v~nlsk~yg~---~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~i 80 (239)
T d1v43a3 6 EVKLENLTKRFGN---FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPPK--DRNI 80 (239)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCGG--GGTE
T ss_pred eEEEEEEEEEECC---EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCcc--cceE
Confidence 5999999999974 4699999999999999999999999999999999999999999999999999988864 6789
Q ss_pred EEEcCCCCCCh-hhHHHHHHH------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEE
Q 040099 1090 GVVSQEPVLFS-DTIRANIAE------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKIL 1156 (1236)
Q Consensus 1090 ~~V~Qdp~LF~-gTIreNL~~------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~IL 1156 (1236)
|||||+|.||. .||+||+.- ...+.++++.+ |++........+||||||||+||||||+.+|+||
T Consensus 81 g~v~Q~~~l~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGGq~QRvaiAraL~~~P~iL 158 (239)
T d1v43a3 81 SMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVRWAAELL--QIEELLNRYPAQLSGGQRQRVAVARAIVVEPDVL 158 (239)
T ss_dssp EEEEC------CCCHHHHHHTTCC--CCCHHHHHHHHHHHHHHT--TCGGGTTSCTTTCCSSCHHHHHHHHHHTTCCSEE
T ss_pred EEEeechhhcccchHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CChhhhcCChhhCCHHHHHHHHHHhhhccCCCce
Confidence 99999999996 599999961 11222333332 5556667788899999999999999999999999
Q ss_pred EEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHH
Q 040099 1157 LLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTS 1229 (1236)
Q Consensus 1157 lLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~ 1229 (1236)
|||||||+||+.+...|++.|+++.+ |+|+|+|||+++.+.. ||||++|++|+|++.|+|+|+.+++...|.+
T Consensus 159 llDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~~~ 234 (239)
T d1v43a3 159 LMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGSPTEVYLRPNSVFVA 234 (239)
T ss_dssp EEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHCCSBHHHH
T ss_pred eecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHHH
Confidence 99999999999999999999998743 7999999999999966 9999999999999999999999987766653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=2.7e-50 Score=428.52 Aligned_cols=209 Identities=30% Similarity=0.462 Sum_probs=183.5
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|.+ .+|+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+++++.. |++||
T Consensus 2 i~v~nlsk~y~~----~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~~--~r~ig 75 (229)
T d3d31a2 2 IEIESLSRKWKN----FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSPE--KHDIA 75 (229)
T ss_dssp EEEEEEEEECSS----CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCHH--HHTCE
T ss_pred EEEEEEEEEeCC----EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccchh--Hhcce
Confidence 789999999963 389999999999999999999999999999999999999999999999999988765 78999
Q ss_pred EEcCCCCCChh-hHHHHHHHH---------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1091 VVSQEPVLFSD-TIRANIAEM---------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~~---------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
||||+|.||.. ||+||+.-. ..+.+.++.+ |+.........+||||||||++|||||+.+|+||||||
T Consensus 76 ~v~Q~~~l~~~~tV~enl~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSGG~~QRvaiAraL~~~P~iLllDE 153 (229)
T d3d31a2 76 FVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKRVLDTARDL--KIEHLLDRNPLTLSGGEQQRVALARALVTNPKILLLDE 153 (229)
T ss_dssp EECTTCCCCTTSCHHHHHHHHHHHHCCCCHHHHHHHHHHT--TCTTTTTSCGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred eeccccccCccccHHHHHHHHHhhccccHHHHHHHHHHHh--cchhhHhCChhhCCHHHhcchhhhhhhhccCCceeecC
Confidence 99999999965 999999511 1122222222 45555566778899999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCccc
Q 040099 1161 ATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIY 1227 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y 1227 (1236)
|||+||+.+...+++.|+++. .+.|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++++...|
T Consensus 154 Pts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~~~el~~~P~~~~ 223 (229)
T d3d31a2 154 PLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGKPEEIFEKPVEGR 223 (229)
T ss_dssp SSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEECHHHHHSSCCTTH
T ss_pred CCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHH
Confidence 999999999999999999864 37899999999999876 99999999999999999999998865554
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.1e-50 Score=432.26 Aligned_cols=216 Identities=28% Similarity=0.387 Sum_probs=188.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC---hHHHh
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ---VKWLR 1086 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~---~~~lR 1086 (1236)
.|+++||+++|+.. +..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+...+ ....|
T Consensus 3 ~i~v~nlsk~y~~g-~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~~~~~r 81 (242)
T d1oxxk2 3 RIIVKNVSKVFKKG-KVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIVPPED 81 (242)
T ss_dssp CEEEEEEEEEEGGG-TEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESSCGGG
T ss_pred EEEEEeEEEEECCC-CEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhhcchhh
Confidence 58999999999743 356899999999999999999999999999999999999999999999999998765 44568
Q ss_pred cceEEEcCCCCCChh-hHHHHHHHH------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIAEM------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~~~------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++||||||+|.||+. ||+|||..- ..+.+.++.+ |++........+||||||||+||||||+.+|
T Consensus 82 r~ig~vfQ~~~L~p~ltv~eni~~~l~~~~~~~~~~~~~v~~~l~~~--gL~~~~~~~p~~LSGGqkQRvaiARaL~~~P 159 (242)
T d1oxxk2 82 RKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKRVEEVAKIL--DIHHVLNHFPRELSGAQQQRVALARALVKDP 159 (242)
T ss_dssp SCEEEEETTSCCCTTSCHHHHHHGGGTTSSCCHHHHHHHHHHHHHHT--TCGGGTTSCGGGSCHHHHHHHHHHHHHTTCC
T ss_pred ccceEEeccccccccccHHHHhhhhhHhhcCCHHHHHHHHHHHHhhc--ChHhhhhCChhhCCHHHHhHHHHHhHHhhcc
Confidence 889999999999976 999999611 1122233222 5555566777899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+|||||||||+||+.+...+++.|+++.+ +.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++...|.
T Consensus 160 ~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~~~el~~~P~~~~~ 237 (242)
T d1oxxk2 160 SLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGKPEDLYDNPVSIQV 237 (242)
T ss_dssp SEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSSHHH
T ss_pred cceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 99999999999999999999999988743 7899999999999865 999999999999999999999998766664
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=2.5e-50 Score=430.32 Aligned_cols=211 Identities=27% Similarity=0.406 Sum_probs=160.4
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
|+++||+++|.+ ..+|+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+.+.+.. |++||
T Consensus 1 Iev~nv~k~yg~---~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~~--~r~ig 75 (232)
T d2awna2 1 VQLQNVTKAWGE---VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPPA--ERGVG 75 (232)
T ss_dssp EEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCGG--GTCEE
T ss_pred CEEEEEEEEECC---EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCchh--hceee
Confidence 789999999964 4699999999999999999999999999999999999999999999999999987754 67899
Q ss_pred EEcCCCCCChh-hHHHHHHH------------HhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1091 VVSQEPVLFSD-TIRANIAE------------MANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1091 ~V~Qdp~LF~g-TIreNL~~------------~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
||||+|.||.. |++||+.- ...+.+.++.+ |+.........+||||||||++|||||+.+|+|||
T Consensus 76 ~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~v~~~l~~~--~l~~~~~~~~~~LSGGqkQRvaiAraL~~~P~ill 153 (232)
T d2awna2 76 MVFQSYALYPHLSVAENMSFGLKLAGAKKEVINQRVNQVAEVL--QLAHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFL 153 (232)
T ss_dssp EECSSCCC---------------------CHHHHHHHHHHHHC-----------------------CHHHHHHTCCSEEE
T ss_pred eeccccccccchhHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CChhhhhCChhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 99999999966 99999951 11223333322 34444456677899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1158 LDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
||||||+||+.+.+.|++.|++.. .+.|+|+|||+++.+.. ||||++|++|+|++.|+|+|+++++...|.
T Consensus 154 lDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~~~el~~~P~~~~v 227 (232)
T d2awna2 154 LDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGKPLELYHYPADRFV 227 (232)
T ss_dssp EESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred EcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeCHHHHHhCCCCHHH
Confidence 999999999999999999998864 47899999999999977 999999999999999999999998776664
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=4.6e-50 Score=430.48 Aligned_cols=216 Identities=31% Similarity=0.493 Sum_probs=187.7
Q ss_pred EEEeEEEEECCCCCC-cccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH---Hh
Q 040099 1011 VQFLRVSFKYPTRPH-IEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW---LR 1086 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~-~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~---lR 1086 (1236)
|+++||+++|+.+.. ..||+||||+|++||.+||+||||||||||+++|.|+.+|++|+|.+||.|+...+.+. +|
T Consensus 2 i~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (240)
T d3dhwc1 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTKAR 81 (240)
T ss_dssp EEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhhhh
Confidence 789999999975432 25899999999999999999999999999999999999999999999999999887654 56
Q ss_pred cceEEEcCCCCCChh-hHHHHHHHHh------------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCC
Q 040099 1087 QQMGVVSQEPVLFSD-TIRANIAEMA------------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEP 1153 (1236)
Q Consensus 1087 ~~i~~V~Qdp~LF~g-TIreNL~~~a------------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p 1153 (1236)
++||+|||+|.+|+. ||+||+.... .+.+.++.+ |++........+||||||||+||||||+.+|
T Consensus 82 r~ig~VfQ~~~l~~~~tv~eni~~~l~~~~~~~~~~~~~v~~~L~~v--gL~~~~~~~~~~LSGG~~QRvaiAraL~~~P 159 (240)
T d3dhwc1 82 RQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEVKRRVTELLSLV--GLGDKHDSYPSNLSGGQKQRVAIARALASNP 159 (240)
T ss_dssp HHEEECCSSCCCCTTSBHHHHHHHHHHTTTCCTTHHHHHHHHHHHHH--STTTTTSSCBSCCCHHHHHHHHHHHHHHTCC
T ss_pred ccccccccccccCCCccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHc--CCchhhhCChhhCCHHHHHHHHHhhhhccCC
Confidence 789999999999976 9999996211 122222222 4544556677899999999999999999999
Q ss_pred CEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1154 KILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1154 ~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
+||||||||++||+.+...|++.|+++.+ |.|+|+|||+++.+.. ||||+||++|+|+|.|+|+|+++++...|.
T Consensus 160 ~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~~ei~~~P~~~~t 237 (240)
T d3dhwc1 160 KVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTVSEVFSHPKTPLA 237 (240)
T ss_dssp SEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEETTTTTCSSCCTTT
T ss_pred CeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCHHHHHhCCCChHH
Confidence 99999999999999999999999998743 7899999999999976 999999999999999999999988766664
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=6.7e-50 Score=429.19 Aligned_cols=214 Identities=27% Similarity=0.431 Sum_probs=185.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHH----H
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKW----L 1085 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~----l 1085 (1236)
.|+++||+++|.+ ..||+||||+|++||++||+||||||||||+++|.|+++|++|+|.+||.|+...+... .
T Consensus 3 ~i~v~nl~k~yg~---~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 3 GVRLVDVWKVFGE---VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred cEEEEeEEEEECC---EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 4899999999964 46999999999999999999999999999999999999999999999999998776544 3
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHhh------------hchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccC
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMAN------------ANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKE 1152 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a~------------~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~ 1152 (1236)
|++||+|||+|.||+. ||+||+..... +.+.++.+ |+.........+||||||||++|||||+.+
T Consensus 80 ~r~ig~v~Q~~~L~~~ltV~eni~~~~~~~~~~~~e~~~~v~~~l~~~--~l~~~~~~~p~~LSGGqkQRv~IAraL~~~ 157 (240)
T d1g2912 80 DRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQRVREVAELL--GLTELLNRKPRELSGGQRQRVALGRAIVRK 157 (240)
T ss_dssp GSSEEEECSCCCCCTTSCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH--TCGGGTTCCGGGSCHHHHHHHHHHHHHHTC
T ss_pred cccceecccchhhcchhhhhHhhhhhHHHcCCCHHHHHHHHHHHHHHc--CChhHhcCChhhCCHHHHHHHHHHHHHhcC
Confidence 7889999999999976 99999962111 22222221 344444566778999999999999999999
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccH
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYT 1228 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~ 1228 (1236)
|+||||||||++||+.+...|++.|+++.+ |.|+|+|||+++.+.. ||||+||++|+|++.|+|+|++.++...|.
T Consensus 158 P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~~~el~~~P~~~~~ 236 (240)
T d1g2912 158 PQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGSPDEVYDKPANTFV 236 (240)
T ss_dssp CSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCSBHHH
T ss_pred CCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhCCCCHHH
Confidence 999999999999999999999999988743 7899999999999976 999999999999999999999998766664
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=9.3e-50 Score=435.74 Aligned_cols=222 Identities=29% Similarity=0.484 Sum_probs=190.6
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCC--------
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQ-------- 455 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~-------- 455 (1236)
.|+++||+++|+ +.+||+||||+|++||++||+||||||||||+++|+|+++|++|+|++||+++...+
T Consensus 2 ~Lev~nl~k~yg---~~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYG---GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEEC---CEEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 489999999995 357999999999999999999999999999999999999999999999999986442
Q ss_pred -----HHHHhcceEEEccCCCCCch-hHHHHHhcCC---CCCCH----HHHHHHHHHhccHHHH-HhCCCCccccccCCC
Q 040099 456 -----LKWIREKIGLVSQEPVLLSS-SIRDNIAYGK---THATK----EEIQAAAEAANASHFI-KNLPQGLDTNVGEHG 521 (1236)
Q Consensus 456 -----~~~~r~~i~~v~Q~~~l~~~-ti~~ni~~g~---~~~~~----~~~~~~~~~~~~~~~i-~~l~~g~~t~~g~~g 521 (1236)
...+|++||||||+|.+|+. ||+||+.++. ...+. +.+.++++.+++.+.. .+. +
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----------p 147 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKVGIDERAQGKY-----------P 147 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCCHHHHTSC-----------G
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHcCCchhhhccC-----------c
Confidence 23577889999999999875 9999998762 22333 3345555566654433 223 3
Q ss_pred CCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEE
Q 040099 522 IQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKI 599 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i 599 (1236)
.+||||||||++|||||+.+|++|||||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|
T Consensus 148 ~~LSGG~~QRv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~i 227 (258)
T d1b0ua_ 148 VHLSGGQQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKI 227 (258)
T ss_dssp GGSCHHHHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEE
T ss_pred ccccHHHHHHHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEE
Confidence 4899999999999999999999999999999999999999999999885 47899999999999876 999999999999
Q ss_pred EEEeCcccccccccchhhhh
Q 040099 600 VEKGTHSELLENPYGAYNRL 619 (1236)
Q Consensus 600 ~~~g~~~~l~~~~~~~y~~~ 619 (1236)
+++|+++|++.+|...|.+-
T Consensus 228 v~~g~~~ev~~~P~~~~~~~ 247 (258)
T d1b0ua_ 228 EEEGDPEQVFGNPQSPRLQQ 247 (258)
T ss_dssp EEEECHHHHHHSCCSHHHHH
T ss_pred EEEcCHHHHHhCCCCHHHHH
Confidence 99999999998877777543
|
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2.2e-49 Score=423.07 Aligned_cols=204 Identities=27% Similarity=0.423 Sum_probs=173.8
Q ss_pred EEEeEEEEECCCCC-CcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHH----
Q 040099 1011 VQFLRVSFKYPTRP-HIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWL---- 1085 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~-~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~l---- 1085 (1236)
|+++||+++|+... ...||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+..++.+.+
T Consensus 2 I~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~r 81 (230)
T d1l2ta_ 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKIR 81 (230)
T ss_dssp EEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHH
T ss_pred EEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchhh
Confidence 78999999997432 2247999999999999999999999999999999999999999999999999999987765
Q ss_pred hcceEEEcCCCCCChh-hHHHHHHHHh---------------hhchHHHhhhhchhh-hhcCCCCCCChhHHHHHHHHHH
Q 040099 1086 RQQMGVVSQEPVLFSD-TIRANIAEMA---------------NANGFISGLQEGYDT-LVGERGVQLSGGQKQRVAIARA 1148 (1236)
Q Consensus 1086 R~~i~~V~Qdp~LF~g-TIreNL~~~a---------------~~~~~i~~lp~Gldt-~vge~G~~LSGGQrQRlaLARA 1148 (1236)
|++||||+|+|.||+. ||+||+.-.. .+.+.++. -|+.. .......+||||||||+|||||
T Consensus 82 ~~~ig~v~Q~~~l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~--~~L~~~~~~~~p~~LSGGqkQRvaIAra 159 (230)
T d1l2ta_ 82 RDKIGFVFQQFNLIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKM--AELEERFANHKPNQLSGGQQQRVAIARA 159 (230)
T ss_dssp HHHEEEECTTCCCCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHH--TTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred cceEEEEecchhhCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHh--hchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence 4579999999999865 9999985111 11111111 12322 2344567899999999999999
Q ss_pred HccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhhcCEEEEEeCCEEEEecCh
Q 040099 1149 IVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKNAHLIAVVSQGMIVEKGSH 1216 (1236)
Q Consensus 1149 Llr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~aD~I~Vl~~G~Ive~Gt~ 1216 (1236)
|+.+|+|||||||||+||+.+.+.|++.|+++. .++|+|+|||+++.++.||||++|++|+|+|+|++
T Consensus 160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVARFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHHTTSSEEEEEETTEEEEEEEC
T ss_pred hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHHHhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999874 37899999999998888999999999999999975
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=2.9e-48 Score=420.33 Aligned_cols=219 Identities=27% Similarity=0.435 Sum_probs=184.5
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHh-cc
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIR-EK 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r-~~ 462 (1236)
-|+++|++++|+ +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+|+...+.+..+ ..
T Consensus 6 ~Lev~~l~k~yg---~~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYG---AIHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEET---TEEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEEC---CEEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 489999999995 35799999999999999999999999999999999999999999999999999998877654 45
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCC-CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTH-ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK 540 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~-~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~ 540 (1236)
|+|+||++.+|+. ||+||+.++... ...++..+..+.+ +..+ .+++......+.+||||||||++|||||+.
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~-----~~~~-~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~ 156 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWI-----FSLF-PRLKERLKQLGGTLSGGEQQMLAIGRALMS 156 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHH-----HHHC-HHHHTTTTSBSSSSCHHHHHHHHHHHHHTT
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHH-----HHHh-hChHHHHhCchhhCCHHHHHHHHHHHHHHh
Confidence 9999999999976 999999886422 1222222222211 0111 123333445566899999999999999999
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|++|||||||++||+.+...+++.|+++. +|+|+|+|||+++.+.. ||||++|++|+|+++|+++|+.++
T Consensus 157 ~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 157 RPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp CCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred CCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999999999885 47899999999999865 999999999999999999999875
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=7.4e-48 Score=420.64 Aligned_cols=215 Identities=33% Similarity=0.509 Sum_probs=184.1
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCC--------
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQ-------- 1081 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~-------- 1081 (1236)
.|+++||+++|.+ .+||+||||+|++||++||+||||||||||+++|.|+++|++|+|++||.|+...+
T Consensus 2 ~Lev~nl~k~yg~---~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~ 78 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG---HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKV 78 (258)
T ss_dssp CEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEE
T ss_pred eEEEEEEEEEECC---EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhccc
Confidence 4899999999964 46999999999999999999999999999999999999999999999999997553
Q ss_pred -----hHHHhcceEEEcCCCCCChh-hHHHHHHHH-------------hhhchHHHhhhhchhhhh-cCCCCCCChhHHH
Q 040099 1082 -----VKWLRQQMGVVSQEPVLFSD-TIRANIAEM-------------ANANGFISGLQEGYDTLV-GERGVQLSGGQKQ 1141 (1236)
Q Consensus 1082 -----~~~lR~~i~~V~Qdp~LF~g-TIreNL~~~-------------a~~~~~i~~lp~Gldt~v-ge~G~~LSGGQrQ 1141 (1236)
...+|++||+|||+|.+|+. ||+||+... ..+.+.++.+ |+.... .....+|||||||
T Consensus 79 ~~~~~~~~~r~~ig~vfQ~~~l~~~~tv~env~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~p~~LSGG~~Q 156 (258)
T d1b0ua_ 79 ADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKHDARERALKYLAKV--GIDERAQGKYPVHLSGGQQQ 156 (258)
T ss_dssp SCHHHHHHHHHHEEEECSSCCCCTTSCHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHT--TCCHHHHTSCGGGSCHHHHH
T ss_pred ccHhHHHHHhcceEEEEechhhccchhcchhhhhhHHHhcCCCHHHHHHHHHHHHHHc--CCchhhhccCcccccHHHHH
Confidence 34678899999999999975 999998521 1122222222 333322 2345789999999
Q ss_pred HHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHH
Q 040099 1142 RVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESL 1219 (1236)
Q Consensus 1142 RlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eL 1219 (1236)
|++|||||+.+|+||||||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+|.|+|+|+
T Consensus 157 Rv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~~~ev 236 (258)
T d1b0ua_ 157 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGDPEQV 236 (258)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEECHHHH
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHH
Confidence 9999999999999999999999999999999999998875 56899999999999976 999999999999999999999
Q ss_pred hhccCcccHH
Q 040099 1220 ISTKNGIYTS 1229 (1236)
Q Consensus 1220 l~~~~g~y~~ 1229 (1236)
++++...|.+
T Consensus 237 ~~~P~~~~~~ 246 (258)
T d1b0ua_ 237 FGNPQSPRLQ 246 (258)
T ss_dssp HHSCCSHHHH
T ss_pred HhCCCCHHHH
Confidence 9987666653
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=1.4e-47 Score=409.27 Aligned_cols=221 Identities=31% Similarity=0.478 Sum_probs=185.7
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
+++ ++.++|.. . .+ ||||+++ ||+++|+||||||||||+++|+|+++|++|+|.++|+|+.+++.. |++||
T Consensus 3 l~v-~~~k~~g~---~-~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig 73 (240)
T d2onka1 3 LKV-RAEKRLGN---F-RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIG 73 (240)
T ss_dssp EEE-EEEEEETT---E-EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCB
T ss_pred EEE-EEEEEECC---E-EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCce
Confidence 556 56788842 2 24 8999995 689999999999999999999999999999999999999888764 67899
Q ss_pred EEccCCCCCch-hHHHHHhcCCCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCC
Q 040099 465 LVSQEPVLLSS-SIRDNIAYGKTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPR 543 (1236)
Q Consensus 465 ~v~Q~~~l~~~-ti~~ni~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ 543 (1236)
||||++.||+. ||+|||.|+....+.++.++.+ .+.++.+ |++......+.+||||||||++|||||+.+|+
T Consensus 74 ~v~Q~~~l~~~ltV~enl~~~l~~~~~~~~~~~v-----~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~ 146 (240)
T d2onka1 74 FVPQDYALFPHLSVYRNIAYGLRNVERVERDRRV-----REMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPR 146 (240)
T ss_dssp CCCSSCCCCTTSCHHHHHHTTCTTSCHHHHHHHH-----HHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCS
T ss_pred eeccchhhcccchhhHhhhhhhcccCHHHHHHHH-----HHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCC
Confidence 99999999975 9999999987655554433221 2233333 55555566667999999999999999999999
Q ss_pred EEEEeCcCCCCCHHHHHHHHHHHHHHcc--CceEEEEecCchhHhh-cCeEEEEECCEEEEEeCcccccccccchhhhhH
Q 040099 544 ILLLDEATSALDSESGRMVQEALDRVMI--NRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLENPYGAYNRLI 620 (1236)
Q Consensus 544 ililDE~ts~lD~~~~~~i~~~l~~~~~--~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~~~~~y~~~~ 620 (1236)
+||||||||+||+.+...+++.|+++.+ |.|+|+|||+++.+.. ||||++|++|+|++.|+++|+++.++...++++
T Consensus 147 illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl 226 (240)
T d2onka1 147 LLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFL 226 (240)
T ss_dssp SBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHG
T ss_pred ceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHh
Confidence 9999999999999999999999998853 8899999999999876 999999999999999999999987666556655
Q ss_pred H
Q 040099 621 R 621 (1236)
Q Consensus 621 ~ 621 (1236)
.
T Consensus 227 ~ 227 (240)
T d2onka1 227 S 227 (240)
T ss_dssp G
T ss_pred C
Confidence 4
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=4.8e-48 Score=423.19 Aligned_cols=217 Identities=23% Similarity=0.394 Sum_probs=184.1
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhc-c
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIRE-K 462 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~-~ 462 (1236)
-|+++||+++|+ +.+||+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+|+...++...++ .
T Consensus 4 iL~v~nlsk~yg---~~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFG---EFKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEET---TEEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEEC---CeEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 389999999996 357999999999999999999999999999999999999999999999999999998877654 5
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCCC---------------CCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCCh
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKTH---------------ATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSG 526 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~~---------------~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSg 526 (1236)
|+||||++.+|.. ||+||+.++... ..+++..+.+ .+.++.+ |++........+|||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~l~~~--~l~~~~~~~~~~LSg 153 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKA-----FKILEFL--KLSHLYDRKAGELSG 153 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHH-----HHHHHHT--TCGGGTTSBGGGSCH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHH-----HHHHHhc--CcchhccCchhhCCc
Confidence 9999999998865 999999986321 1111211111 1222222 455455556678999
Q ss_pred HHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeC
Q 040099 527 GQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 527 GqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~ 604 (1236)
|||||++|||||+.+|++|||||||++||+.+.+.+++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|+++|+
T Consensus 154 G~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 154 GQMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999998884 57999999999999865 99999999999999999
Q ss_pred cccccc
Q 040099 605 HSELLE 610 (1236)
Q Consensus 605 ~~~l~~ 610 (1236)
++|+.+
T Consensus 234 ~~e~~~ 239 (254)
T d1g6ha_ 234 GEEEIK 239 (254)
T ss_dssp SHHHHH
T ss_pred HHHHhh
Confidence 998764
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=3.6e-47 Score=411.71 Aligned_cols=210 Identities=24% Similarity=0.398 Sum_probs=182.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc-c
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-Q 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~-~ 1088 (1236)
-++++|++++|.+ ..||+||||+|++||.+||+||||||||||+++|+|+++|++|+|++||.|+...+.+..++ .
T Consensus 6 ~Lev~~l~k~yg~---~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~r~g 82 (240)
T d1ji0a_ 6 VLEVQSLHVYYGA---IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAHVINRMG 82 (240)
T ss_dssp EEEEEEEEEEETT---EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHTT
T ss_pred EEEEeeEEEEECC---EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHHHHHHhc
Confidence 4799999999964 46999999999999999999999999999999999999999999999999999988777644 4
Q ss_pred eEEEcCCCCCChh-hHHHHHHHH----------hhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEM----------ANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~----------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
|+++||++.+|+. |++||+.-. ....+.+..+-.+++........+||||||||++|||||+.+|+|||
T Consensus 83 i~~~~q~~~l~~~ltv~en~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~LSGG~~Qrv~iAraL~~~P~lLl 162 (240)
T d1ji0a_ 83 IALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFSLFPRLKERLKQLGGTLSGGEQQMLAIGRALMSRPKLLM 162 (240)
T ss_dssp EEEECSSCCCCTTSBHHHHHHGGGTTCCCSSHHHHHHHHHHHHCHHHHTTTTSBSSSSCHHHHHHHHHHHHHTTCCSEEE
T ss_pred ccccCcccccCCcccHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhChHHHHhCchhhCCHHHHHHHHHHHHHHhCCCEee
Confidence 9999999999986 999998511 11111121222245555556677899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+...|++.|+++. +|+|+|+|||+++.+.. ||||+||++|+|++.|+|+|++++
T Consensus 163 lDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 229 (240)
T d1ji0a_ 163 MDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGKASELLDN 229 (240)
T ss_dssp EECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEEHHHHHTC
T ss_pred ecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHhcC
Confidence 999999999999999999999874 57899999999999866 999999999999999999999875
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=3.1e-47 Score=411.29 Aligned_cols=218 Identities=29% Similarity=0.438 Sum_probs=187.0
Q ss_pred CcEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcc
Q 040099 383 GDIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREK 462 (1236)
Q Consensus 383 ~~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~ 462 (1236)
|.|+++|++++|. +++||+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+|+.+. ...+|+.
T Consensus 1 gaI~v~nl~k~yg---~~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~-~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIG---KKEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEE-PHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEET---TEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTC-HHHHHTT
T ss_pred CCEEEEeEEEEEC---CEEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccC-hHHHHhh
Confidence 4699999999995 35799999999999999999999999999999999999999999999999999864 5678899
Q ss_pred eEEEccCCCCCch-hHHHHHhcCCC--CCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhc
Q 040099 463 IGLVSQEPVLLSS-SIRDNIAYGKT--HATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMI 539 (1236)
Q Consensus 463 i~~v~Q~~~l~~~-ti~~ni~~g~~--~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~ 539 (1236)
+|||||++.+|.. |++||+.+... ..+.+++.+..+.. ++.+ |++....++..+||||||||++|||||+
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~-----l~~~--~l~~~~~~~~~~lSgG~~qrv~iA~al~ 149 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERA-----TEIA--GLGEKIKDRVSTYSKGMVRKLLIARALM 149 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHH-----HHHH--CCGGGGGSBGGGCCHHHHHHHHHHHHHT
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHH-----HHhC--CCHHHHhhhhhhCCHHHHHHHHHHHHHh
Confidence 9999999988865 99999976421 22344444333321 1111 4455555666789999999999999999
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
.+|+||||||||++||+.+.+.+++.++++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|+.++
T Consensus 150 ~~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 150 VNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp TCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred cCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 9999999999999999999999999998875 57999999999999976 999999999999999999999754
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=8.4e-47 Score=407.82 Aligned_cols=210 Identities=26% Similarity=0.421 Sum_probs=185.5
Q ss_pred ccEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcc
Q 040099 1009 GEVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1009 g~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
|.|+++|++++|.. .+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|.++|.|+.+ ....+|++
T Consensus 1 gaI~v~nl~k~yg~---~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~-~~~~~~~~ 76 (238)
T d1vpla_ 1 GAVVVKDLRKRIGK---KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVE-EPHEVRKL 76 (238)
T ss_dssp CCEEEEEEEEEETT---EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTT-CHHHHHTT
T ss_pred CCEEEEeEEEEECC---EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEeccc-ChHHHHhh
Confidence 57999999999974 369999999999999999999999999999999999999999999999999987 45688999
Q ss_pred eEEEcCCCCCChh-hHHHHHHHHh--------hhchHHHhhhh--chhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEE
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEMA--------NANGFISGLQE--GYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILL 1157 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~a--------~~~~~i~~lp~--Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILl 1157 (1236)
++||||++.+|.. |++||+.-.+ ...+.++.+.+ |++....+...+||||||||++|||||+.+|+|||
T Consensus 77 i~~vpq~~~~~~~ltv~e~l~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~lSgG~~qrv~iA~al~~~p~ill 156 (238)
T d1vpla_ 77 ISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEMVERATEIAGLGEKIKDRVSTYSKGMVRKLLIARALMVNPRLAI 156 (238)
T ss_dssp EEEECTTCCCCTTSBHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCGGGGGSBGGGCCHHHHHHHHHHHHHTTCCSEEE
T ss_pred EeEeeeccccCCCccHHHHHHHHHHhcCCCHHHHHHHHHHHHHhCCCHHHHhhhhhhCCHHHHHHHHHHHHHhcCCCEEE
Confidence 9999999988876 9999985221 12223333322 45555667778899999999999999999999999
Q ss_pred EecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1158 LDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1158 LDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
|||||++||+.+.+.+++.|++.. +|+|+|++||+++.+.. ||||+||++|+|++.|+|+||.++
T Consensus 157 LDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~~~el~~~ 223 (238)
T d1vpla_ 157 LDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGTVEELKER 223 (238)
T ss_dssp EESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEEHHHHHHH
T ss_pred ecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcCHHHHHhc
Confidence 999999999999999999998864 57899999999999986 999999999999999999999876
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=2e-46 Score=410.32 Aligned_cols=208 Identities=22% Similarity=0.346 Sum_probs=179.8
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhc-c
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQ-Q 1088 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~-~ 1088 (1236)
-++++||+++|.+ .+||+||||+|++||.+||+||||||||||+++|.|+++|++|+|++||.|+...++...++ .
T Consensus 4 iL~v~nlsk~yg~---~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~~~~~~g 80 (254)
T d1g6ha_ 4 ILRTENIVKYFGE---FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPAELYHYG 80 (254)
T ss_dssp EEEEEEEEEEETT---EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHHT
T ss_pred eEEEEEEEEEECC---eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHHHHHHhc
Confidence 3789999999974 46999999999999999999999999999999999999999999999999999999888765 4
Q ss_pred eEEEcCCCCCChh-hHHHHHHHH-------------------------hhhchHHHhhhhchhhhhcCCCCCCChhHHHH
Q 040099 1089 MGVVSQEPVLFSD-TIRANIAEM-------------------------ANANGFISGLQEGYDTLVGERGVQLSGGQKQR 1142 (1236)
Q Consensus 1089 i~~V~Qdp~LF~g-TIreNL~~~-------------------------a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQR 1142 (1236)
|++|||+|.+|.. ||+||+.-. ..+.+.++.+ |++........+||||||||
T Consensus 81 i~~v~Q~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~LSgG~~Qr 158 (254)
T d1g6ha_ 81 IVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFL--KLSHLYDRKAGELSGGQMKL 158 (254)
T ss_dssp EEECCCCCGGGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHT--TCGGGTTSBGGGSCHHHHHH
T ss_pred CCccCCccccCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhc--CcchhccCchhhCCcHHHHH
Confidence 9999999998865 999999410 0111111111 34444445667899999999
Q ss_pred HHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHh
Q 040099 1143 VAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLI 1220 (1236)
Q Consensus 1143 laLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl 1220 (1236)
++|||||+.+|++|||||||++||+.+.+.|++.|++.. +|+|+|+|+|+++.+.. ||||+||++|+|++.|+|+|+.
T Consensus 159 v~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~~~e~~ 238 (254)
T d1g6ha_ 159 VEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGRGEEEI 238 (254)
T ss_dssp HHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEESHHHH
T ss_pred HHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEecHHHHh
Confidence 999999999999999999999999999999999998864 57999999999999865 9999999999999999999976
Q ss_pred hc
Q 040099 1221 ST 1222 (1236)
Q Consensus 1221 ~~ 1222 (1236)
++
T Consensus 239 ~~ 240 (254)
T d1g6ha_ 239 KN 240 (254)
T ss_dssp HH
T ss_pred hc
Confidence 54
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=4.5e-46 Score=397.50 Aligned_cols=208 Identities=33% Similarity=0.522 Sum_probs=178.0
Q ss_pred EEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcC
Q 040099 1015 RVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQ 1094 (1236)
Q Consensus 1015 ~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Q 1094 (1236)
++..+|.+- .+ ||||+++ ||.+||+||||||||||+++|.|+++|++|+|.+||.|+.++++. |++||||||
T Consensus 6 ~~~k~~g~~----~~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~~--~r~ig~v~Q 77 (240)
T d2onka1 6 RAEKRLGNF----RL-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPPE--RRGIGFVPQ 77 (240)
T ss_dssp EEEEEETTE----EE-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCTT--TSCCBCCCS
T ss_pred EEEEEECCE----EE-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCHH--HcCceeecc
Confidence 455666432 23 8999995 689999999999999999999999999999999999999988865 789999999
Q ss_pred CCCCChh-hHHHHHH----------HHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCC
Q 040099 1095 EPVLFSD-TIRANIA----------EMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATS 1163 (1236)
Q Consensus 1095 dp~LF~g-TIreNL~----------~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTS 1163 (1236)
+|.||+. ||+|||. ....+.+.++.+ |+..........||||||||++|||||+.+|+|||||||||
T Consensus 78 ~~~l~~~ltV~enl~~~l~~~~~~~~~~~v~~~l~~~--gl~~~~~~~~~~LSGG~kQRvaiAral~~~P~illlDEPts 155 (240)
T d2onka1 78 DYALFPHLSVYRNIAYGLRNVERVERDRRVREMAEKL--GIAHLLDRKPARLSGGERQRVALARALVIQPRLLLLDEPLS 155 (240)
T ss_dssp SCCCCTTSCHHHHHHTTCTTSCHHHHHHHHHHHHHTT--TCTTTTTCCGGGSCHHHHHHHHHHHHHTTCCSSBEEESTTS
T ss_pred chhhcccchhhHhhhhhhcccCHHHHHHHHHHHHHhc--CcHhhhhCChhhCCHHHHHHHHHHHHHhccCCceEecCccc
Confidence 9999975 9999995 111233333333 56556667788999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHcC--CCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhccCcccHHhhh
Q 040099 1164 ALDIESERVVQDALDQVMV--DRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLISTKNGIYTSLIE 1232 (1236)
Q Consensus 1164 aLD~~te~~I~~~L~~~~~--~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~~~g~y~~L~~ 1232 (1236)
+||+.+...+++.|++..+ +.|+|+|||+++.+.. ||||+||++|+|++.|+|+|+++.++...++++.
T Consensus 156 ~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~~~el~~~~~~~v~~fl~ 227 (240)
T d2onka1 156 AVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGKLKELFSAKNGEVAEFLS 227 (240)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEECHHHHHHSCCSSHHHHGG
T ss_pred cCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEecHHHHhcCCCHHHHHHhC
Confidence 9999999999999998753 7899999999999876 9999999999999999999999887766666553
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=3.8e-43 Score=379.05 Aligned_cols=208 Identities=25% Similarity=0.369 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 385 IELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 385 i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
++++||+++| +|+||||+|++||++||+||||||||||+++|+|++ |++|+|.++|+++...+...++...+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899997654 699999999999999999999999999999999976 68999999999999999999999999
Q ss_pred EEccCCC-CCchhHHHHHhcCCCCCC-HHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcC--
Q 040099 465 LVSQEPV-LLSSSIRDNIAYGKTHAT-KEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIK-- 540 (1236)
Q Consensus 465 ~v~Q~~~-l~~~ti~~ni~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~-- 540 (1236)
|++|+.. .|..++.+|+.++..... .+.+.++++..++ +..++.+..+||||||||++|||||++
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~l-----------~~~~~~~~~~LSgG~~Qrv~iA~al~~~~ 144 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGALAL-----------DDKLGRSTNQLSGGEWQRVRLAAVVLQIT 144 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHTTC-----------TTTTTSBGGGCCHHHHHHHHHHHHHHHHC
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhcCC-----------HhHhCcChhhcCHHHHHHHHHHHHHHhhC
Confidence 9999876 467799999998765444 4555566655544 444556667899999999999999997
Q ss_pred -----CCCEEEEeCcCCCCCHHHHHHHHHHHHHHc-cCceEEEEecCchhHhh-cCeEEEEECCEEEEEeCccccccc
Q 040099 541 -----DPRILLLDEATSALDSESGRMVQEALDRVM-INRTTVIVSHRLSLIRN-ANIIAVIQQGKIVEKGTHSELLEN 611 (1236)
Q Consensus 541 -----~p~ililDE~ts~lD~~~~~~i~~~l~~~~-~~~t~i~itH~~~~~~~-ad~i~vl~~G~i~~~g~~~~l~~~ 611 (1236)
+|+||||||||++||+.+...+.+.|+++. +|+|+|++||+++.+.. ||||++|++|+|+++|+++|++.+
T Consensus 145 p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 145 PQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp TTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred cccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 779999999999999999999999999884 58899999999998755 999999999999999999999875
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=8.4e-42 Score=368.52 Aligned_cols=202 Identities=23% Similarity=0.371 Sum_probs=175.8
Q ss_pred EEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceE
Q 040099 1011 VQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMG 1090 (1236)
Q Consensus 1011 I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~ 1090 (1236)
++++||+++| +|+||||+|++||.+||+||||||||||+++|.|++ |.+|+|.++|.|+...+...++.+.+
T Consensus 4 l~~~dv~~~~-------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~~~~~~~~ 75 (231)
T d1l7vc_ 4 MQLQDVAEST-------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSATKLALHRA 75 (231)
T ss_dssp EEEEEECCTT-------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHHHHHHHEE
T ss_pred EEEECcccCc-------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHHHHHhhce
Confidence 7899998654 599999999999999999999999999999999986 68999999999999999999999999
Q ss_pred EEcCCCC-CChhhHHHHHHHHh-------hhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHHcc-------CCCE
Q 040099 1091 VVSQEPV-LFSDTIRANIAEMA-------NANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAIVK-------EPKI 1155 (1236)
Q Consensus 1091 ~V~Qdp~-LF~gTIreNL~~~a-------~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr-------~p~I 1155 (1236)
+++|+.. .|..++.+|+.... .+.+....+ +++..++....+||||||||++|||||++ +|+|
T Consensus 76 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~LSgG~~Qrv~iA~al~~~~p~~~p~p~l 153 (231)
T d1l7vc_ 76 YLSQQQTPPFATPVWHYLTLHQHDKTRTELLNDVAGAL--ALDDKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQL 153 (231)
T ss_dssp EECSCCCCCSSCBHHHHHHHHCSCTTCHHHHHHHHHHT--TCTTTTTSBGGGCCHHHHHHHHHHHHHHHHCTTTCTTCCE
T ss_pred eeeccccCCccccHHHHhhhccchhhHHHHHHHHHHhc--CCHhHhCcChhhcCHHHHHHHHHHHHHHhhCcccCCCCCE
Confidence 9999876 46778999885111 111222222 45666777778999999999999999997 7799
Q ss_pred EEEecCCCCCCHHHHHHHHHHHHHHc-CCCeEEEEecCchhhhh-cCEEEEEeCCEEEEecChhHHhhc
Q 040099 1156 LLLDEATSALDIESERVVQDALDQVM-VDRTTLVVAHRLSTIKN-AHLIAVVSQGMIVEKGSHESLIST 1222 (1236)
Q Consensus 1156 LlLDEaTSaLD~~te~~I~~~L~~~~-~~~TvI~IaHRl~ti~~-aD~I~Vl~~G~Ive~Gt~~eLl~~ 1222 (1236)
||||||||+||+.+...+.+.|+++. +|+|+|+|+|+++.+.. ||||+||++|+|++.|+|+|++++
T Consensus 154 lllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~~~ev~~~ 222 (231)
T d1l7vc_ 154 LLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGRREEVLTP 222 (231)
T ss_dssp EEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSBHHHHSCH
T ss_pred EEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECCHHHHhCC
Confidence 99999999999999999999999864 67899999999998765 999999999999999999999875
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.9e-40 Score=350.20 Aligned_cols=191 Identities=24% Similarity=0.444 Sum_probs=157.4
Q ss_pred cEEEEeEEEECCCCCCCccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcce
Q 040099 384 DIELKDVNFSYPARPDEQILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKI 463 (1236)
Q Consensus 384 ~i~~~~v~f~y~~~~~~~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i 463 (1236)
.|+++|+||+|+ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.+||+++.. ++.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 369999999999999999999999999999999999999999999999999864 57889
Q ss_pred EEEccCCCCCch-hHHHHHhcC----CCCCCHHHHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHh
Q 040099 464 GLVSQEPVLLSS-SIRDNIAYG----KTHATKEEIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAM 538 (1236)
Q Consensus 464 ~~v~Q~~~l~~~-ti~~ni~~g----~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal 538 (1236)
+|+||++.++.. |+.||+.+. ....+++++.++++..++.+ ++ ++..+||||||||++|||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~----~~~~~LSgG~~qrv~ia~al 140 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALESVEVLD--------LK----KKLGELSQGTIRRVQLASTL 140 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHHHTTCCC--------TT----SBGGGSCHHHHHHHHHHHHT
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHHHcCCcc--------cc----cccCcCCCcHHHHHHHHHHH
Confidence 999999988765 999998753 23456777777766554322 22 23347999999999999999
Q ss_pred cCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEEEEC
Q 040099 539 IKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAVIQQ 596 (1236)
Q Consensus 539 ~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~vl~~ 596 (1236)
+.+|+++||||||++||+.+++.+++.|.++.+++++++|+|+- .+..||++.+|++
T Consensus 141 ~~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 141 LVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred hcCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 99999999999999999999999999998886544333333332 2456999988753
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=6.5e-39 Score=338.34 Aligned_cols=187 Identities=19% Similarity=0.383 Sum_probs=151.2
Q ss_pred cEEEeEEEEECCCCCCcccccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1010 EVQFLRVSFKYPTRPHIEVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1010 ~I~f~~Vsf~Y~~~~~~~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|+++|++++|+ .+||+||||+|++||.+||+||||||||||+++|+|+++|++|+|.+||.++.+ +|.++
T Consensus 2 ~lev~~ls~~y~----~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~-----~~~~i 72 (200)
T d1sgwa_ 2 KLEIRDLSVGYD----KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK-----VKGKI 72 (200)
T ss_dssp EEEEEEEEEESS----SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG-----GGGGE
T ss_pred eEEEEEEEEEeC----CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH-----hcCcE
Confidence 489999999994 259999999999999999999999999999999999999999999999999864 67899
Q ss_pred EEEcCCCCCChh-hHHHHHHHHhhhc-------hHHHhhhhchh-hhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEec
Q 040099 1090 GVVSQEPVLFSD-TIRANIAEMANAN-------GFISGLQEGYD-TLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDE 1160 (1236)
Q Consensus 1090 ~~V~Qdp~LF~g-TIreNL~~~a~~~-------~~i~~lp~Gld-t~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDE 1160 (1236)
+++||++.++.. |+.+|+...+... +..+.+. .++ ..+.++..+||||||||++|||||+++|+|+||||
T Consensus 73 ~~~~~~~~~~~~~t~~~~l~~~~~~~~~~~~~~~~~~~l~-~~~~~~~~~~~~~LSgG~~qrv~ia~al~~~~~llllDE 151 (200)
T d1sgwa_ 73 FFLPEEIIVPRKISVEDYLKAVASLYGVKVNKNEIMDALE-SVEVLDLKKKLGELSQGTIRRVQLASTLLVNAEIYVLDD 151 (200)
T ss_dssp EEECSSCCCCTTSBHHHHHHHHHHHTTCCCCHHHHHHHHH-HTTCCCTTSBGGGSCHHHHHHHHHHHHTTSCCSEEEEES
T ss_pred EEEeecccCCCCcCHHHHHHHHHHhcCCccCHHHHHHHHH-HcCCcccccccCcCCCcHHHHHHHHHHHhcCCCEEEEcC
Confidence 999999988765 9999986332221 1111111 111 01334455799999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEEEeC
Q 040099 1161 ATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAVVSQ 1207 (1236)
Q Consensus 1161 aTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~Vl~~ 1207 (1236)
||++||++++..+++.|.+..+++++++|+|+- .+..||++.+|.+
T Consensus 152 Pt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~-~l~~~D~~~~l~~ 197 (200)
T d1sgwa_ 152 PVVAIDEDSKHKVLKSILEILKEKGIVIISSRE-ELSYCDVNENLHK 197 (200)
T ss_dssp TTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESS-CCTTSSEEEEGGG
T ss_pred cccccCHHHHHHHHHHHHHHHhCCCEEEEEEec-hhhhcchhhheee
Confidence 999999999999999999876655444554442 3457999998853
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=1.4e-31 Score=303.69 Aligned_cols=316 Identities=19% Similarity=0.259 Sum_probs=290.8
Q ss_pred hHHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 46 PFHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATKTLAIHGVLKVSKKFVYLALGAGVASFFQV 125 (1236)
Q Consensus 46 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 125 (1236)
.++++++|.+||++ .++++++++++.+++.+..|++++.++|......+. ..+...++.++++.++..++.+++.
T Consensus 3 ~~krl~~~~~~~k~-~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~~----~~l~~~~~~~~~~~~~~~i~~~~~~ 77 (319)
T d3b60a2 3 TFRRLWPTIAPFKA-GLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTDR----SVLLWMPLVVIGLMILRGITSYISS 77 (319)
T ss_dssp HHHHHHHHHGGGHH-HHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTTH----HHHHHSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCH----HHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 47899999999876 456677777888888899999999999986543232 2233445566677777888999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 040099 126 ACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFKGW 205 (1236)
Q Consensus 126 ~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (1236)
++..+.+.++..++|.++|+|++++|+++|+++ ++|++++|+++|++.+.+.+...+..++..++.++++++++++++|
T Consensus 78 ~~~~~~~~~~~~~l~~~~~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 156 (319)
T d3b60a2 78 YCISWVSGKVVMTMRRRLFGHMMGMPVAFFDKQ-STGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSW 156 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTCCSTHHHHS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred hhhhhhhhccccchhhHHHHhhcccchhhcccc-ccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 206 LLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQEG 285 (1236)
Q Consensus 206 ~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 285 (1236)
.+++++++.+|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|+.|+.+.++|++..++..+...+..
T Consensus 157 ~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~ 236 (319)
T d3b60a2 157 QLSIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMV 236 (319)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q 040099 286 LATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAINRK 365 (1236)
Q Consensus 286 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~~~ 365 (1236)
+..+...+...++..+..++++++|++++.+|++|+|++++++.++.....|+.++...+..++++.+|++|++|++|.|
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~ 316 (319)
T d3b60a2 237 SASSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSE 316 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC
Q 040099 366 PE 367 (1236)
Q Consensus 366 ~~ 367 (1236)
||
T Consensus 317 ~E 318 (319)
T d3b60a2 317 QE 318 (319)
T ss_dssp CS
T ss_pred CC
Confidence 76
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.7e-31 Score=302.19 Aligned_cols=319 Identities=14% Similarity=0.126 Sum_probs=284.6
Q ss_pred HHHHHHhhchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccch---hHHHhhHHHHHHHHHHHHHHHHHHHHH
Q 040099 47 FHKLLSFADLLDSVLMLVGTIAATGNGLCVPFVALLFGDLMDSIGQNATK---TLAIHGVLKVSKKFVYLALGAGVASFF 123 (1236)
Q Consensus 47 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~ 123 (1236)
++|+++|.+||++ .++++++++++.+++....|++++.++|.+....+. ......+...+..++++.++..++.++
T Consensus 2 lKrl~~~~k~~k~-~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (323)
T d2hyda2 2 IKRYLQFVKPYKY-RIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFI 80 (323)
T ss_dssp HHHHHHHHGGGHH-HHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6889999999876 456667777777788888899999999986543211 111111112223334455566788889
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCChhhHhccCCcchHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 124 QVACWMITGERQAARIRSFYLETILRQDIAFFDKEINTGEVVGRISGDTLLIQDAIGEKVGKFIQFGASFIGGFLIAFFK 203 (1236)
Q Consensus 124 ~~~~~~~~~~~~~~~lR~~~~~~l~~~~~~~f~~~~~~G~l~sr~~~D~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 203 (1236)
+.++..+.+.++..++|.++|+|++++|++||+++ ++|++++|+++|++.+++.+...+..++..++.+++++++++++
T Consensus 81 ~~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~~-~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 81 RQYLAQWTSNKILYDIRKKLYNHLQALSARFYANN-QVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHTS-CHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhhhcccccccccc-cccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 99999999999999999999999999999999999 99999999999999999999999899999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhchHHHHHHHHHHHHHHHHHHHHH
Q 040099 204 GWLLTLTMLSSIPPLVIAGVVMIKLVGNLASQKQAADSLAATVVAQTIGSIRTVASFTGEQQASSIYNKCLVKSYKSSVQ 283 (1236)
Q Consensus 204 ~~~l~l~~l~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~~ik~~~~e~~~~~~~~~~~~~~~~~~~~ 283 (1236)
+|.+++++++.+|+..++...+.++.++..++.++..++.++.+.|.++|+++||+|++|+.+.++|++..++..+...|
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCcChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 040099 284 EGLATGLGLGASVFIIFSAYGLGVWYGAKLILEKGYSGGDVMSVIFGVLIGSMSLGQASPCLSAFAAGQAAAFKFFEAIN 363 (1236)
Q Consensus 284 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~v~~g~~t~g~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~s~~ri~~~l~ 363 (1236)
..+..+...++..++..+..++++++|++++.+|.+|+|++++++.+......|+.++...+..++++.+|++|++|++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC
Q 040099 364 RKPE 367 (1236)
Q Consensus 364 ~~~~ 367 (1236)
++||
T Consensus 320 ~e~e 323 (323)
T d2hyda2 320 EDYD 323 (323)
T ss_dssp CCCS
T ss_pred CCCC
Confidence 8764
|
| >d3b60a2 f.37.1.1 (A:10-328) Multidrug resistance ABC transporter MsbA, N-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Multidrug resistance ABC transporter MsbA, N-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=99.94 E-value=6.5e-24 Score=239.91 Aligned_cols=316 Identities=19% Similarity=0.260 Sum_probs=287.0
Q ss_pred hhHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 674 SLSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKEELMRHSKHWALMFVALGAASLLTSPLSMYCF 753 (1236)
Q Consensus 674 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 753 (1236)
.+++++.+.+++++.++++.+++++.++..+..+++++.+++......+ ......+.+.++++.++..++.+++.+..
T Consensus 3 ~~krl~~~~~~~k~~l~~~~i~~~~~~~~~~~~~~~~~~~id~~~~~~~--~~~l~~~~~~~~~~~~~~~i~~~~~~~~~ 80 (319)
T d3b60a2 3 TFRRLWPTIAPFKAGLIVAGIALILNAASDTFMLSLLKPLLDDGFGKTD--RSVLLWMPLVVIGLMILRGITSYISSYCI 80 (319)
T ss_dssp HHHHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHSSTTSTT--HHHHHHSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCC--HHHHHHHHHHHHHHHHHhhhhhhhhhhhh
Confidence 3577888889999999999988888888888888999988886543321 12223345566667777888899999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH
Q 040099 754 AVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKACWQL 833 (1236)
Q Consensus 754 ~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~~~~l 833 (1236)
.+.+.++..++|.+++++++++|+++|++ +++|++++|+++|++.+...+...+...+..+..+++.+++++..+|.+
T Consensus 81 ~~~~~~~~~~l~~~~~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~l 158 (319)
T d3b60a2 81 SWVSGKVVMTMRRRLFGHMMGMPVAFFDK--QSTGTLLSRITYDSEQVASSSSGALITVVREGASIIGLFIMMFYYSWQL 158 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCSTHHHH--SCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred hhhhhccccchhhHHHHhhcccchhhccc--cccccccccccccccccccccccccchhhhhhhhhhhHHHHHHhhhccc
Confidence 99999999999999999999999999994 8899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHHHHHH
Q 040099 834 ALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIRQGLM 913 (1236)
Q Consensus 834 ~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 913 (1236)
++++++.+|+..+......++..+..++.++..++..+.+.|.++|+++||+|+.|+++.+++++..++..+...+....
T Consensus 159 ~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~ik~~~~e~~~~~~~~~~~~~~~~~~~~~~~~ 238 (319)
T d3b60a2 159 SIILVVLAPIVSIAIRVVSKRFRSISKNMQNTMGQVTTSAEQMLKGHKEVLIFGGQEVETKRFDKVSNKMRLQGMKMVSA 238 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhhHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHhhcCCceeeehhccchhhhhhhhhhhhhhHHHHHHHHH
Confidence 99999999999999999999999889999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 040099 914 SGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLIDQVSK 993 (1236)
Q Consensus 914 ~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~~~~~ 993 (1236)
..........+..+..++++++|++++..|.+|+|+++++..+......|+..+......+.++..+++|+.+++|.++|
T Consensus 239 ~~~~~~~~~~~~~~~~~~~l~~g~~~~~~g~it~g~l~~~~~~~~~~~~pl~~l~~~~~~~~~~~~s~~Ri~elld~~~E 318 (319)
T d3b60a2 239 SSISDPIIQLIASLALAFVLYAASFPSVMDSLTAGTITVVFSSMIALMRPLKSLTNVNAQFQRGMAACQTLFAILDSEQE 318 (319)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHSSSTTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHhcccchhhhhhhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987764
|
| >d2hyda2 f.37.1.1 (A:1-323) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Membrane and cell surface proteins and peptides fold: ABC transporter transmembrane region superfamily: ABC transporter transmembrane region family: ABC transporter transmembrane region domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=99.93 E-value=7.7e-24 Score=239.94 Aligned_cols=316 Identities=15% Similarity=0.163 Sum_probs=279.3
Q ss_pred hHHHhhhcCCchHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcCchh----H-HhhhHHHHHHHHHHHHHHHHHHHHHH
Q 040099 675 LSRLAYLNSPEVPALLLGAIASMTNGIIIPIFGVMLAAMVNTLNEPKE----E-LMRHSKHWALMFVALGAASLLTSPLS 749 (1236)
Q Consensus 675 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 749 (1236)
+++++.+.+++++.++.+.+++++.+......+++++.+++....... . .......+...++++.++..++.+++
T Consensus 2 lKrl~~~~k~~k~~~~~~~~~~~~~~~~~~~~p~l~~~~id~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 81 (323)
T d2hyda2 2 IKRYLQFVKPYKYRIFATIIVGIIKFGIPMLIPLLIKYAIDGVINNHALTTDEKVHHLTIAIGIALFIFVIVRPPIEFIR 81 (323)
T ss_dssp HHHHHHHHGGGHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467778888899988888888888888888888889999887643311 1 11111112223334455566778888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcccccccCCChhHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 040099 750 MYCFAVAGCKLIKRIRSMCFEKVVYMEVGWFDEADHSTGAIGARLSSDAALVRSLVGDTLSLLVQNTATAVVGLVIAFKA 829 (1236)
Q Consensus 750 ~~~~~~~~~~~~~~lr~~~~~~ll~~~~~~fd~~~~~~G~l~~rls~D~~~i~~~~~~~l~~~~~~~~~~v~~~ii~~~~ 829 (1236)
.++..+.+.+...++|.+++++++++|++||++ +++|++++|+++|++.+++.+...+...+..+..+++.+++++..
T Consensus 82 ~~~~~~~~~~~~~~lr~~l~~~ll~~~~~~~~~--~~~g~~~~~~~~d~~~i~~~~~~~~~~~~~~~~~~i~~~~~l~~~ 159 (323)
T d2hyda2 82 QYLAQWTSNKILYDIRKKLYNHLQALSARFYAN--NQVGQVISRVINDVEQTKDFILTGLMNIWLDCITIIIALSIMFFL 159 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHT--SCHHHHHHHHHHHHHHTHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhHHHHHHHhhhhhccccccccc--ccccccccccchhhhhhccchhhhhhhcchhhhhhhhhhhhhhhh
Confidence 889999999999999999999999999999994 889999999999999999999999988999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHhccHHHHHHHHHHHHhhHHHHHHH
Q 040099 830 CWQLALLVLAIFPLLGITGHIQMKSMKGFSANAENMYEEASQVASDAVSSIRTVASFCAEEKVMKLYKKKCEGPIKAGIR 909 (1236)
Q Consensus 830 ~~~l~lv~l~~~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~tIra~~~~~~~~~~~~~~~~~~~~~~~~ 909 (1236)
+|.+++++++..|+..+......++.++..++..+..++..+.+.|.++|+++||+|+.++++.++|++..++..+...+
T Consensus 160 ~~~l~li~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~Ik~~~~e~~~~~~~~~~~~~~~~~~~k 239 (323)
T d2hyda2 160 DVKLTLAALFIFPFYILTVYVFFGRLRKLTRERSQALAEVQGFLHERVQGISVVKSFAIEDNEAKNFDKKNTNFLTRALK 239 (323)
T ss_dssp CTTTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHhhhcccccchhHHHHHHHHHHHHHHHHHhcCCchhhhHhhhccchhhhhcccccccchhhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 040099 910 QGLMSGIGFGLSFFFFFMAYAVTFYVGAKLVDHKQATFTEVFRVFFALSMTAIGISQTSSLASDASKAKSSAASVFGLID 989 (1236)
Q Consensus 910 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~~~ 989 (1236)
..............+..+..++++++|++++..|.+++|+++++..+......|+..+.....++.++..+++|+.+++|
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~s~g~l~~~~~~~~~l~~~l~~l~~~~~~~~~~~~s~~Ri~elLd 319 (323)
T d2hyda2 240 HTRWNAYSFAAINTVTDIGPIIVIGVGAYLAISGSITVGTLAAFVGYLELLFGPLRRLVASFTTLTQSFASMDRVFQLID 319 (323)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHTHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HhhhhhhccccccccchhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccc
Q 040099 990 QVS 992 (1236)
Q Consensus 990 ~~~ 992 (1236)
++|
T Consensus 320 ~e~ 322 (323)
T d2hyda2 320 EDY 322 (323)
T ss_dssp CCC
T ss_pred CCC
Confidence 654
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=4.7e-18 Score=175.32 Aligned_cols=159 Identities=13% Similarity=0.065 Sum_probs=105.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKEEIQ 494 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~~~~ 494 (1236)
+++|+||||||||||++.|+|.++|+.|.+.+++.+.................+...++..+...+...++.....+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 78 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKLVGSYGVNVQ--- 78 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSEETTEEECHH---
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhhhhhhhcCcc---
Confidence 58999999999999999999999999999999887654332211111122222233333333322222221111111
Q ss_pred HHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHc--cC
Q 040099 495 AAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVM--IN 572 (1236)
Q Consensus 495 ~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~--~~ 572 (1236)
...+|+|+++|.++++++.++|+++++|||....+. ...+.+.+.+.. .+
T Consensus 79 --------------------------~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~ 130 (178)
T d1ye8a1 79 --------------------------YFEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPN 130 (178)
T ss_dssp --------------------------HHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTT
T ss_pred --------------------------hhhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCC
Confidence 114789999999999999999999999998654432 223334444432 36
Q ss_pred ceEEEEecCchhHhhcCeEEEEECCEEEEEeC
Q 040099 573 RTTVIVSHRLSLIRNANIIAVIQQGKIVEKGT 604 (1236)
Q Consensus 573 ~t~i~itH~~~~~~~ad~i~vl~~G~i~~~g~ 604 (1236)
.|+|+++|+.+....+|++..+++|++++-+.
T Consensus 131 ~~il~~~h~~~~~~~~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 131 VNVVATIPIRDVHPLVKEIRRLPGAVLIELTP 162 (178)
T ss_dssp SEEEEECCSSCCSHHHHHHHTCTTCEEEECCT
T ss_pred CEEEEEEccHHHHHhhceEEEEeCCEEEEECC
Confidence 79999999988777899999999999987643
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.64 E-value=3.8e-18 Score=176.02 Aligned_cols=159 Identities=13% Similarity=0.103 Sum_probs=109.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHHhh
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFISGL 1120 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~~l 1120 (1236)
|++|+||+|||||||++.|+|+++|..|.+.++|.+....+.........+.++.+.++..+..++.. . .+
T Consensus 2 ki~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~- 72 (178)
T d1ye8a1 2 KIIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKRTGFRIITTEGKKKIFSSKFFTSKKL-V-------GS- 72 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC------CCEEEEEETTCCEEEEEETTCCCSSE-E-------TT-
T ss_pred EEEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHHHHhhhhhhhhhhHHHHHHhhhhhhhhhh-h-------hh-
Confidence 69999999999999999999999999999999987765544332222333344444444333322110 0 00
Q ss_pred hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhhh
Q 040099 1121 QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIKN 1198 (1236)
Q Consensus 1121 p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~~ 1198 (1236)
.+.++.. ..+|+|++||.++++++.++|++|++|||+...+. ....++.+.+.. .++|+|+++|+.+....
T Consensus 73 -~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~~--~~~~~~~l~~~l~~~~~~il~~~h~~~~~~~ 145 (178)
T d1ye8a1 73 -YGVNVQY----FEELAIPILERAYREAKKDRRKVIIIDEIGKMELF--SKKFRDLVRQIMHDPNVNVVATIPIRDVHPL 145 (178)
T ss_dssp -EEECHHH----HHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGG--CHHHHHHHHHHHTCTTSEEEEECCSSCCSHH
T ss_pred -hhcCcch----hhhhhhhhHHHHHHHHHhcCCCceeecCCCccchh--hHHHHHHHHHHhccCCCEEEEEEccHHHHHh
Confidence 0111111 24799999999999999999999999998655432 223334444433 36899999999988888
Q ss_pred cCEEEEEeCCEEEEecC
Q 040099 1199 AHLIAVVSQGMIVEKGS 1215 (1236)
Q Consensus 1199 aD~I~Vl~~G~Ive~Gt 1215 (1236)
+|++..+++|++++.+.
T Consensus 146 ~~~i~~~~~~~i~~v~~ 162 (178)
T d1ye8a1 146 VKEIRRLPGAVLIELTP 162 (178)
T ss_dssp HHHHHTCTTCEEEECCT
T ss_pred hceEEEEeCCEEEEECC
Confidence 99999999999998764
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.25 E-value=1.3e-11 Score=144.51 Aligned_cols=73 Identities=23% Similarity=0.320 Sum_probs=62.2
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcC-CCeEEEEecCchhhhhcCEEEEE
Q 040099 1133 VQLSGGQKQRVAIARAI----VKEPKILLLDEATSALDIESERVVQDALDQVMV-DRTTLVVAHRLSTIKNAHLIAVV 1205 (1236)
Q Consensus 1133 ~~LSGGQrQRlaLARAL----lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~-~~TvI~IaHRl~ti~~aD~I~Vl 1205 (1236)
..||||||.+++||-.+ +.++||++||||+++||+.+...+.+.|++... +.-+|+|||++.++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 45799999998876433 568899999999999999999999999987743 44599999999999999998754
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.21 E-value=3e-11 Score=141.15 Aligned_cols=73 Identities=21% Similarity=0.301 Sum_probs=62.8
Q ss_pred CCCChHHHHHHHHHHH----hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHcc-CceEEEEecCchhHhhcCeEEEE
Q 040099 522 IQLSGGQKQRVAIARA----MIKDPRILLLDEATSALDSESGRMVQEALDRVMI-NRTTVIVSHRLSLIRNANIIAVI 594 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARa----l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~-~~t~i~itH~~~~~~~ad~i~vl 594 (1236)
..||||||.++++|-. .+.++|+++||||+++||+.....+.+.|+++.. +.-+|+|||++.++..||+++.+
T Consensus 331 ~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~~~~ad~~~~V 408 (427)
T d1w1wa_ 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTMFEKSDALVGV 408 (427)
T ss_dssp GGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHHHTTCSEEEEE
T ss_pred hhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHhcccEEEE
Confidence 4579999999887643 3678899999999999999999999999988753 45699999999999999998755
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.14 E-value=1.3e-10 Score=129.69 Aligned_cols=76 Identities=25% Similarity=0.367 Sum_probs=66.7
Q ss_pred CCCChHHHHHHHHHHH----hcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhHhhcCeEEE--EE
Q 040099 522 IQLSGGQKQRVAIARA----MIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLIRNANIIAV--IQ 595 (1236)
Q Consensus 522 ~~LSgGqkqRiaiARa----l~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~~ad~i~v--l~ 595 (1236)
..+|+|||+...++.. ...+|+++++|||-++|||.....+.+.|++..++.-+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 4689999999877665 45678999999999999999999999999998888899999999999999999865 55
Q ss_pred CC
Q 040099 596 QG 597 (1236)
Q Consensus 596 ~G 597 (1236)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.01 E-value=7.6e-10 Score=123.31 Aligned_cols=76 Identities=26% Similarity=0.347 Sum_probs=66.9
Q ss_pred CCCChhHHHHHHHHHHH----ccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhhhhcCEEEE--Ee
Q 040099 1133 VQLSGGQKQRVAIARAI----VKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTIKNAHLIAV--VS 1206 (1236)
Q Consensus 1133 ~~LSGGQrQRlaLARAL----lr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~I~V--l~ 1206 (1236)
..+|+|||+++.++..+ ..+|+++++|||-++|++...+.+.+.|++..++.=+|++||++..+..+|+++. ++
T Consensus 218 ~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~~~~d~~~~v~~~ 297 (308)
T d1e69a_ 218 SLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVMEAADLLHGVTMV 297 (308)
T ss_dssp GGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGGGGCSEEEEEEES
T ss_pred hhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHHHhcccEEEEEEe
Confidence 35899999998776653 4568999999999999999999999999999888889999999999999999865 66
Q ss_pred CC
Q 040099 1207 QG 1208 (1236)
Q Consensus 1207 ~G 1208 (1236)
+|
T Consensus 298 ~g 299 (308)
T d1e69a_ 298 NG 299 (308)
T ss_dssp SS
T ss_pred CC
Confidence 66
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.36 E-value=0.0002 Score=77.04 Aligned_cols=160 Identities=16% Similarity=0.133 Sum_probs=79.1
Q ss_pred ccccceeEEecCCCEEEEEcCCCCChHHHHHHHhc-ccCCCCcEEEECCeecccCChHHH-hcceEEEcCCCCCChhhHH
Q 040099 1027 EVFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR-FYDPSSGHITLDGVEIQKLQVKWL-RQQMGVVSQEPVLFSDTIR 1104 (1236)
Q Consensus 1027 ~vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r-~~~~~~G~I~idG~di~~i~~~~l-R~~i~~V~Qdp~LF~gTIr 1104 (1236)
+-|+++..-+.|||.+.|.|+||+||||++.-+.. +..-..-.+.+- . -+.+.+.+ ++.++...+-+.--..+.+
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~~~a~~~g~~v~~~--s-~E~~~~~~~~r~~~~~~~~~~~~~~~~~ 99 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLA--M-LEESVEETAEDLIGLHNRVRLRQSDSLK 99 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEE--E-SSSCHHHHHHHHHHHHTTCCGGGCHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHhhhhhcccceeEe--e-eccchhhHHhHHHHHhhcCCchhhcccc
Confidence 35777765689999999999999999999876653 322222234331 1 13444433 3344444444433334454
Q ss_pred HHHHHHhhhchHHHhhhhchhhhhcCCCCCCChhHHHHHHHHHHH--ccCCCEEEEecCC-----CCCCH--HHHHHHHH
Q 040099 1105 ANIAEMANANGFISGLQEGYDTLVGERGVQLSGGQKQRVAIARAI--VKEPKILLLDEAT-----SALDI--ESERVVQD 1175 (1236)
Q Consensus 1105 eNL~~~a~~~~~i~~lp~Gldt~vge~G~~LSGGQrQRlaLARAL--lr~p~ILlLDEaT-----SaLD~--~te~~I~~ 1175 (1236)
.+..+......+...+...-.-.+-......... ..+...+.. -.+|+++++|=-+ .+-+. +....+.+
T Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~vvID~l~~l~~~~~~~~~~~~~~~~~~ 177 (277)
T d1cr2a_ 100 REIIENGKFDQWFDELFGNDTFHLYDSFAEAETD--RLLAKLAYMRSGLGCDVIILDHISIVVSASGESDERKMIDNLMT 177 (277)
T ss_dssp HHHHHTSHHHHHHHHHHSSSCEEEECCC-CCCHH--HHHHHHHHHHHTTCCSEEEEEEEEC----------CHHHHHHHH
T ss_pred cchhhhHHHHHHHHHhhccceeeeeccccchhHH--HHHHHhhhhhhccCcceEEEcccccccccccccchhHHHHHHHH
Confidence 4433332333333322111000111222223332 233333322 2479999999421 11111 22233445
Q ss_pred HHHHHc--CCCeEEEEec
Q 040099 1176 ALDQVM--VDRTTLVVAH 1191 (1236)
Q Consensus 1176 ~L~~~~--~~~TvI~IaH 1191 (1236)
.|+++. .++++++++|
T Consensus 178 ~l~~lA~~~~i~vi~~~q 195 (277)
T d1cr2a_ 178 KLKGFAKSTGVVLVVICH 195 (277)
T ss_dssp HHHHHHHHHCCEEEEEEE
T ss_pred HHHHHhhhccccceeecc
Confidence 566543 3789999998
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.08 E-value=5e-06 Score=83.59 Aligned_cols=35 Identities=23% Similarity=0.131 Sum_probs=29.2
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
+.+.|+||+|+|||||++.+.+.+....+.+.+.+
T Consensus 2 k~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 2 RHVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CCEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 35889999999999999999999987776665544
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=97.01 E-value=0.0016 Score=67.16 Aligned_cols=47 Identities=21% Similarity=0.328 Sum_probs=34.3
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHHH-HHHc-cCceEEEEecCchhHh
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEAL-DRVM-INRTTVIVSHRLSLIR 586 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~l-~~~~-~~~t~i~itH~~~~~~ 586 (1236)
.+..++|+||..++=|+.....+..++ +.+. .+.+++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 455699999999999998766554444 3332 3678899999876654
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.97 E-value=1.2e-05 Score=80.67 Aligned_cols=148 Identities=13% Similarity=0.049 Sum_probs=75.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhh------------------
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDT------------------ 1102 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gT------------------ 1102 (1236)
.|.|+||+|+|||||++.+.+.+....+.+.+.+.+........+......+.|+...+...
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYTEEVRQGGRRIGFDVVTLSGTRGPLSRVGLEPPPGKRECRVGQYVV 82 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEECCEEETTSSEEEEEEEETTSCEEEEEECCCCCCSSSCCEESSSSEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccccccccccccccccccchhhhhhhhhhhhhhhhhccccccccc
Confidence 48999999999999999999999877666665544433222222222233333332111100
Q ss_pred HHHHHHHHhh-hchHHHhh-hhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHH
Q 040099 1103 IRANIAEMAN-ANGFISGL-QEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQV 1180 (1236)
Q Consensus 1103 IreNL~~~a~-~~~~i~~l-p~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~ 1180 (1236)
..+++...+. ..+.+... ..+.+..+.+.....+......+.+-+.++..|+++++...+..-+.. ..+.+.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~- 159 (189)
T d2i3ba1 83 DLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKP--LALVEEIRN- 159 (189)
T ss_dssp CHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHHHHHHHHCSSCCEEEECCCCCSSC--CTTHHHHHT-
T ss_pred cHHHHHHHHHHHHHHHHHHhhcCCCeeEeeccccchhhhHHHHHHHHHHhccCceEEEeccccCCcch--HHHHHHHhC-
Confidence 1111111100 01111111 123444444445566777777888888888887776654433322222 122334433
Q ss_pred cCCCeEEEEec
Q 040099 1181 MVDRTTLVVAH 1191 (1236)
Q Consensus 1181 ~~~~TvI~IaH 1191 (1236)
.++.+++.++.
T Consensus 160 ~~~~~~~~lt~ 170 (189)
T d2i3ba1 160 RKDVKVFNVTK 170 (189)
T ss_dssp TCCSEEEECCS
T ss_pred CCCCeEEEECh
Confidence 34566666643
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.86 E-value=0.0028 Score=65.75 Aligned_cols=46 Identities=17% Similarity=0.257 Sum_probs=32.1
Q ss_pred CCCCEEEEeCcCCCCCHHHHHHHHHH-HHHHc-c-CceEEEEecCchhH
Q 040099 540 KDPRILLLDEATSALDSESGRMVQEA-LDRVM-I-NRTTVIVSHRLSLI 585 (1236)
Q Consensus 540 ~~p~ililDE~ts~lD~~~~~~i~~~-l~~~~-~-~~t~i~itH~~~~~ 585 (1236)
.+..++|+||+.++=|+.....+..+ ++.+. + +..++++||.....
T Consensus 119 ~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 119 TEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred ccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 34569999999999999887766554 44453 3 34677777765543
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.82 E-value=0.00017 Score=72.39 Aligned_cols=26 Identities=38% Similarity=0.563 Sum_probs=23.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
|+.+.|+||||||||||++.|..-++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 88999999999999999999987765
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=96.64 E-value=0.0028 Score=67.58 Aligned_cols=35 Identities=26% Similarity=0.239 Sum_probs=28.7
Q ss_pred ccccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 401 QILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 401 ~~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+-|+++.-=+.+|+++.|.|++|+||||++.-++-
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la~ 57 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQAL 57 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35666654589999999999999999999876653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.62 E-value=0.00049 Score=70.63 Aligned_cols=34 Identities=32% Similarity=0.498 Sum_probs=27.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
+|++++++|+||+|||||+|.|.+-..-..|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 6999999999999999999999988777777775
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=96.55 E-value=0.0027 Score=69.24 Aligned_cols=38 Identities=32% Similarity=0.514 Sum_probs=31.8
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEE
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITL 1072 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~i 1072 (1236)
-++.|..+.|+|++||||||+++.|+++.+|..=-|+|
T Consensus 162 ~v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 162 GIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 34566779999999999999999999999886555555
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.55 E-value=0.00048 Score=68.93 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=24.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
|+++.|+||||||||||++.|...++
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~ 27 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIP 27 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 89999999999999999999987764
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.51 E-value=0.0005 Score=67.86 Aligned_cols=35 Identities=29% Similarity=0.455 Sum_probs=28.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
.|+.|.|+|++||||||+.+.|.+-+.. --+.+|+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~ 37 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHS 37 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecH
Confidence 5889999999999999999999876532 1355665
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.47 E-value=0.00071 Score=69.39 Aligned_cols=34 Identities=24% Similarity=0.388 Sum_probs=25.9
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEE
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~ 1071 (1236)
+|++.+++|+||.|||||+|.|.+-.....|+|.
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs 127 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVS 127 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC-----
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCcc
Confidence 5899999999999999999999876655555543
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.46 E-value=0.0011 Score=63.65 Aligned_cols=34 Identities=29% Similarity=0.329 Sum_probs=25.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
+.|.|+|++||||||+++.|.+-. .|...++.-|
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~~d~ 36 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNINRDD 36 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEECHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEechHH
Confidence 468899999999999999876532 3566665433
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=96.41 E-value=0.006 Score=62.66 Aligned_cols=47 Identities=19% Similarity=0.239 Sum_probs=34.8
Q ss_pred cCCCEEEEecCCCCCCHHHHHHHHHHHHHHc--CCCeEEEEecCchhhh
Q 040099 1151 KEPKILLLDEATSALDIESERVVQDALDQVM--VDRTTLVVAHRLSTIK 1197 (1236)
Q Consensus 1151 r~p~ILlLDEaTSaLD~~te~~I~~~L~~~~--~~~TvI~IaHRl~ti~ 1197 (1236)
.+..++|+||.-++=|++.-..+-.++-+.+ .+++++++||..+...
T Consensus 113 ~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 113 TENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 4556999999999999977666655544432 3678999999876544
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=96.40 E-value=0.0058 Score=58.32 Aligned_cols=31 Identities=32% Similarity=0.283 Sum_probs=23.5
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLID 447 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 447 (1236)
+++.|+|++||||||+++.|.... .|...++
T Consensus 3 klIii~G~pGsGKTTla~~L~~~~---~~~~~~~ 33 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAKN---PGFYNIN 33 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS---TTEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhC---CCCEEec
Confidence 478899999999999999775432 3555554
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.38 E-value=0.006 Score=63.35 Aligned_cols=33 Identities=21% Similarity=0.312 Sum_probs=26.6
Q ss_pred cccceeEE--ecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 402 ILNGFCLL--IPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 402 ~l~~i~~~--i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
-|+++ +. +++|+.+.|.||+|||||||+.-++-
T Consensus 14 ~LD~~-l~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 14 RLDEM-CGGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp HHHHH-TTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHHh-hcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 35555 33 88999999999999999999966654
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.35 E-value=0.00085 Score=66.07 Aligned_cols=26 Identities=38% Similarity=0.580 Sum_probs=24.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.|+++.|+||+||||||+.+.|...+
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~l 28 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLP 28 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999999998865
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.00052 Score=67.30 Aligned_cols=25 Identities=24% Similarity=0.329 Sum_probs=22.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
+++|+|++|||||||++-|.+.+..
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~ 28 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCA 28 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 6899999999999999999876543
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.34 E-value=0.0057 Score=64.89 Aligned_cols=29 Identities=34% Similarity=0.466 Sum_probs=24.0
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
++.|+ .||+.+.|+|++|+||||++.-|.
T Consensus 22 li~G~----~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 22 VLPNM----VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp EETTE----ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred HhCCc----cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 56663 469999999999999999986654
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=96.31 E-value=0.00057 Score=66.98 Aligned_cols=26 Identities=27% Similarity=0.318 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
.++|+|++|||||||++-|.+-+...
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~~~ 29 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALCAR 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHC
Confidence 58999999999999999998766543
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.26 E-value=0.007 Score=59.54 Aligned_cols=87 Identities=17% Similarity=0.217 Sum_probs=51.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchH
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGF 1116 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~ 1116 (1236)
++-+.|-++|++||||||+++-|+.- .|.+.|+. +.++. ++++.+.+
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~~----~~~~~i~~--------D~~~~----------------~~~~~~~~----- 58 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLVS----AGYVHVNR--------DTLGS----------------WQRCVSSC----- 58 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTGG----GTCEEEEH--------HHHCS----------------HHHHHHHH-----
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHh----cCCEEEch--------HHHHH----------------HHHHHHHH-----
Confidence 44578999999999999999887543 23344432 22221 12222111
Q ss_pred HHhhhhchhhhhcCCCCCCChhHHHH-HHHHHHHccCCCEEEE
Q 040099 1117 ISGLQEGYDTLVGERGVQLSGGQKQR-VAIARAIVKEPKILLL 1158 (1236)
Q Consensus 1117 i~~lp~Gldt~vge~G~~LSGGQrQR-laLARALlr~p~ILlL 1158 (1236)
-..|..|.+..++ ..+++-.+|++ +.+||..=-+..++.|
T Consensus 59 ~~~l~~g~~vIiD--~t~~~~~~R~~~~~~a~~~~~~~~~v~l 99 (172)
T d1yj5a2 59 QAALRQGKRVVID--NTNPDVPSRARYIQCAKDAGVPCRCFNF 99 (172)
T ss_dssp HHHHHTTCCEEEE--SCCCSHHHHHHHHHHHHHHTCCEEEEEE
T ss_pred HHHHHCCCCceee--CcCCCHHHHHHHHHHHHhcCCCEEEEEe
Confidence 1235567665554 45788899877 6788875333444444
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=96.22 E-value=0.011 Score=62.50 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=21.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
.||+++.|.|++|+|||||+--|+
T Consensus 27 ~pg~~~~i~G~~G~GKS~l~l~la 50 (274)
T d1nlfa_ 27 VAGTVGALVSPGGAGKSMLALQLA 50 (274)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHH
T ss_pred cCCcEEEEEeCCCCCHHHHHHHHH
Confidence 469999999999999999986654
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.21 E-value=0.0011 Score=67.74 Aligned_cols=49 Identities=20% Similarity=0.280 Sum_probs=37.1
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC--------------CCcEEEECCeecccCChHHHhcc
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP--------------SSGHITLDGVEIQKLQVKWLRQQ 1088 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--------------~~G~I~idG~di~~i~~~~lR~~ 1088 (1236)
.|..+.|+||||||||||.+.|..-++. ..|+ +||+|..-++.+...+.
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p~~~~~~~is~TTR~~R~~E--~~G~dY~Fvs~~~F~~~ 63 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRPGE--VHGEHYFFVNHDEFKEM 63 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCTTC--CBTTTBEECCHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCCccCceEEEEEeccCCCccc--cccccceeecHHHHHHH
Confidence 4889999999999999999988765431 1233 57888777777776654
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.14 E-value=0.0011 Score=65.38 Aligned_cols=28 Identities=36% Similarity=0.394 Sum_probs=24.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
++|-.|.|+|++||||||+.+.|.+-+.
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L~ 31 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTLN 31 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 5789999999999999999999986653
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=96.14 E-value=0.00054 Score=70.55 Aligned_cols=34 Identities=24% Similarity=0.389 Sum_probs=23.0
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEE
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVL 445 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~ 445 (1236)
+|++++++|+||+|||||+|.|.+-..-..|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999998777777775
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.14 E-value=0.0012 Score=65.13 Aligned_cols=27 Identities=26% Similarity=0.304 Sum_probs=24.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++|-++.|+|++||||||+.+.|..-+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999998654
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=96.08 E-value=0.016 Score=59.88 Aligned_cols=47 Identities=17% Similarity=0.193 Sum_probs=32.6
Q ss_pred ccCCCEEEEecCCCCCCHHHHHHHHHH-HHHHc--CCCeEEEEecCchhh
Q 040099 1150 VKEPKILLLDEATSALDIESERVVQDA-LDQVM--VDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1150 lr~p~ILlLDEaTSaLD~~te~~I~~~-L~~~~--~~~TvI~IaHRl~ti 1196 (1236)
..+..++|+||.-++=|+..-..+-.+ ++.+. .++.+|+.||-.+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 344569999999999999777666554 44442 345778888876543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=96.06 E-value=0.015 Score=57.18 Aligned_cols=22 Identities=36% Similarity=0.540 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|+|||++|+|||||++.|+|-
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999875
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.06 E-value=0.0012 Score=67.43 Aligned_cols=27 Identities=30% Similarity=0.476 Sum_probs=23.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
.|.++.|+||||||||||.+.|...++
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 489999999999999999998876553
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=96.05 E-value=0.014 Score=59.00 Aligned_cols=94 Identities=18% Similarity=0.282 Sum_probs=47.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCCCCChhhHHHHHHHHhhhchHHH
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEPVLFSDTIRANIAEMANANGFIS 1118 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp~LF~gTIreNL~~~a~~~~~i~ 1118 (1236)
-..+++|||+|+||||.+.=|...+. .. .+++++|.=|.+=-.+ .|.|...+...
T Consensus 12 p~vi~lvGptGvGKTTTiAKLA~~~~-~~------------------g~kV~lit~Dt~R~ga--~eQL~~~a~~l---- 66 (211)
T d1j8yf2 12 PYVIMLVGVQGTGKATTAGKLAYFYK-KK------------------GFKVGLVGADVYRPAA--LEQLQQLGQQI---- 66 (211)
T ss_dssp SEEEEEECSCCC----HHHHHHHHHH-HT------------------TCCEEEEECCCSSHHH--HHHHHHHHHHH----
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HC------------------CCceEEEEeeccccch--hHHHHHhcccc----
Confidence 35689999999999998766665543 11 2357777777653332 34443333221
Q ss_pred hhhhchhhhhcCCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCC
Q 040099 1119 GLQEGYDTLVGERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSAL 1165 (1236)
Q Consensus 1119 ~lp~Gldt~vge~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaL 1165 (1236)
|......+....+. .--+=++..+..++-++++.| |++.
T Consensus 67 ----~v~~~~~~~~~~~~--~~~~~a~~~~~~~~~d~IlID--TaGr 105 (211)
T d1j8yf2 67 ----GVPVYGEPGEKDVV--GIAKRGVEKFLSEKMEIIIVD--TAGR 105 (211)
T ss_dssp ----TCCEECCTTCCCHH--HHHHHHHHHHHHTTCSEEEEE--CCCS
T ss_pred ----Ccceeecccchhhh--HHHHHHHHHhhccCCceEEEe--cCCc
Confidence 11112222222221 111115566667778888888 5554
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=96.03 E-value=0.0022 Score=63.81 Aligned_cols=41 Identities=27% Similarity=0.447 Sum_probs=31.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc------------CCCCcEEEECCeecccCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY------------DPSSGHITLDGVEIQKLQ 1081 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~------------~~~~G~I~idG~di~~i~ 1081 (1236)
+|||+|++|+|||||++.|++-- .+..|.+.++|.++..++
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~~d 62 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVD 62 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESS
T ss_pred EEEEECCCCCCHHHHHHHHHCCCcceeecccccccccceeeeccCCceeeeec
Confidence 69999999999999999998642 233567788887765554
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.93 E-value=0.0088 Score=63.25 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=25.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.+++..-+-+.||+|+|||+|++.+.+-+.
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 355566699999999999999999998873
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.88 E-value=0.012 Score=57.69 Aligned_cols=25 Identities=40% Similarity=0.506 Sum_probs=21.7
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++-+.+.++|++||||||+.+-+..
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~~ 36 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHLV 36 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHTG
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5567999999999999999988753
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=95.87 E-value=0.016 Score=59.84 Aligned_cols=33 Identities=21% Similarity=0.435 Sum_probs=25.8
Q ss_pred ccceeE-EecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1029 FRDLCL-TIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1029 L~~is~-~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+.+=- -+++|+.+-|.|++||||||++.-+..
T Consensus 15 LD~~l~GGi~~gsl~li~G~pGsGKT~l~~qia~ 48 (242)
T d1tf7a2 15 LDEMCGGGFFKDSIILATGATGTGKTLLVSRFVE 48 (242)
T ss_dssp HHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 444422 389999999999999999999865543
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.86 E-value=0.014 Score=61.19 Aligned_cols=29 Identities=21% Similarity=0.248 Sum_probs=23.8
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+++...+-+.||+|||||++++.|.+.+.
T Consensus 42 ~~~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 42 GKIPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp -CCCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 33445688999999999999999998764
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.84 E-value=0.0015 Score=63.92 Aligned_cols=27 Identities=22% Similarity=0.176 Sum_probs=22.7
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPS 1066 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~ 1066 (1236)
+.++|+|++|||||||+.-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 357999999999999998888776643
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=95.83 E-value=0.00084 Score=69.04 Aligned_cols=34 Identities=26% Similarity=0.439 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEE
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDPSSGHIT 1071 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~ 1071 (1236)
+|++..++|+||.|||||+|.|.+-.....|+|.
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs 129 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEIS 129 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhcccc
Confidence 5889999999999999999999987666566665
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.79 E-value=0.0021 Score=62.92 Aligned_cols=27 Identities=41% Similarity=0.495 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.+.++.|.||+||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 467899999999999999999998754
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=95.77 E-value=0.015 Score=60.84 Aligned_cols=27 Identities=22% Similarity=0.231 Sum_probs=23.1
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+..-+.+.||+|||||++++.|+..+.
T Consensus 44 ~~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 44 IPKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 345678999999999999999998763
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.75 E-value=0.0022 Score=62.90 Aligned_cols=27 Identities=30% Similarity=0.567 Sum_probs=24.5
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
|+|-.++|.||+||||||+.+.|..-+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=95.75 E-value=0.039 Score=55.49 Aligned_cols=28 Identities=39% Similarity=0.767 Sum_probs=22.8
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
++..+++|||+|+||||.+.=|...+.-
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~~ 32 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQN 32 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 4678999999999999988666666643
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.74 E-value=0.0016 Score=63.69 Aligned_cols=27 Identities=22% Similarity=0.203 Sum_probs=22.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
++++|+|++|||||||++-|.+.+...
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~~ 28 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVRE 28 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHT
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhC
Confidence 478999999999999999887766543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=95.74 E-value=0.00029 Score=71.28 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=29.0
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+++.++++.+| ++.|+|||||||||++..|.-.
T Consensus 14 ~~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 14 GFFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp TEEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred CEeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 467788888776 9999999999999999999643
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=95.71 E-value=0.0024 Score=62.61 Aligned_cols=28 Identities=29% Similarity=0.619 Sum_probs=24.9
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
|+|-+|.|.|++||||||+.+.|..-+.
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l~ 30 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAELD 30 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHhC
Confidence 5788999999999999999999987653
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.71 E-value=0.0018 Score=64.90 Aligned_cols=44 Identities=32% Similarity=0.559 Sum_probs=31.3
Q ss_pred EEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhc
Q 040099 1042 IALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
|.|+|||||||+||++.|..-++ |..|+ .||+|..-++.+...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~~~~~~~~~~~TTR~~r~~E--~~g~dy~fvs~~~f~~ 60 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEYPDSFGFSVSSTTRTPRAGE--VNGKDYNFVSVDEFKS 60 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHCTTTEEECCEEECSCCCTTC--CBTTTEEECCHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhCCcceeEEEeeccCCCCCCC--cCCccceeccHHHHHH
Confidence 78999999999999998865432 23453 3677766666665543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.70 E-value=0.0019 Score=63.83 Aligned_cols=24 Identities=25% Similarity=0.526 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.++|+||+|||||||++.|+..+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999866
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.65 E-value=0.0026 Score=62.32 Aligned_cols=27 Identities=26% Similarity=0.386 Sum_probs=23.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
..+++.|.|++||||||+.+.|...+.
T Consensus 2 ~~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 2 TTRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 357899999999999999999998773
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.64 E-value=0.013 Score=61.81 Aligned_cols=29 Identities=17% Similarity=0.191 Sum_probs=24.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+++..-+.+.||+|+|||+|++.+++.+
T Consensus 37 g~~~~~giLL~Gp~GtGKT~l~~ala~~~ 65 (265)
T d1r7ra3 37 GMTPSKGVLFYGPPGCGKTLLAKAIANEC 65 (265)
T ss_dssp CCCCCCEEEEBCCTTSSHHHHHHHHHHHT
T ss_pred CCCCCCeEEEECCCCCcchhHHHHHHHHh
Confidence 34556668999999999999999999877
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=95.63 E-value=0.019 Score=58.04 Aligned_cols=96 Identities=22% Similarity=0.329 Sum_probs=50.2
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhHHHHHhcCCCCCCHH
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSIRDNIAYGKTHATKE 491 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti~~ni~~g~~~~~~~ 491 (1236)
+..++++|||+|+||||.+-=|+..+. ..| ++|++|.=|.+=. ...|
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~~g------------------~kV~lit~Dt~R~--------------ga~e 57 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-KKG------------------FKVGLVGADVYRP--------------AALE 57 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-HTT------------------CCEEEEECCCSSH--------------HHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-HCC------------------CceEEEEeecccc--------------chhH
Confidence 446799999999999998766665443 222 3577777664311 1123
Q ss_pred HHHHHHHHhccHHHHHhCCCCccccccCCCCCCChHHHHHHHHHHHhcCCCCEEEEeCcCCCCC
Q 040099 492 EIQAAAEAANASHFIKNLPQGLDTNVGEHGIQLSGGQKQRVAIARAMIKDPRILLLDEATSALD 555 (1236)
Q Consensus 492 ~~~~~~~~~~~~~~i~~l~~g~~t~~g~~g~~LSgGqkqRiaiARal~~~p~ililDE~ts~lD 555 (1236)
++..-++..+ ......+....+..=. +=++..+...+.++++.| |++..
T Consensus 58 QL~~~a~~l~-----------v~~~~~~~~~~~~~~~--~~a~~~~~~~~~d~IlID--TaGr~ 106 (211)
T d1j8yf2 58 QLQQLGQQIG-----------VPVYGEPGEKDVVGIA--KRGVEKFLSEKMEIIIVD--TAGRH 106 (211)
T ss_dssp HHHHHHHHHT-----------CCEECCTTCCCHHHHH--HHHHHHHHHTTCSEEEEE--CCCSC
T ss_pred HHHHhccccC-----------cceeecccchhhhHHH--HHHHHHhhccCCceEEEe--cCCcC
Confidence 3433333332 2222223333332111 125666677889999999 77753
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=95.62 E-value=0.0019 Score=63.88 Aligned_cols=24 Identities=38% Similarity=0.674 Sum_probs=22.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++|+|+|++|||||||++.|..-+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998876
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.61 E-value=0.0024 Score=63.97 Aligned_cols=25 Identities=28% Similarity=0.364 Sum_probs=21.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
.|||.|++|||||||++.|...+..
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~~ 48 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLRE 48 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhcc
Confidence 4899999999999999999876653
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=95.60 E-value=0.0028 Score=62.01 Aligned_cols=26 Identities=35% Similarity=0.473 Sum_probs=23.6
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.+.|.|.|++||||||+.+.|.+.+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 46799999999999999999999875
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=95.58 E-value=0.0025 Score=62.23 Aligned_cols=27 Identities=37% Similarity=0.393 Sum_probs=24.4
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+.+..+.|+|++||||||+.+.|..-+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 567889999999999999999998876
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.58 E-value=0.0023 Score=64.35 Aligned_cols=22 Identities=45% Similarity=0.525 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|||||++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999974
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.58 E-value=0.0024 Score=62.28 Aligned_cols=32 Identities=28% Similarity=0.475 Sum_probs=25.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
..+.|+||+||||||+++.|.+.+. +.+.++|
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~ 34 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEG 34 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEeh
Confidence 4689999999999999999998763 4455544
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.53 E-value=0.0023 Score=63.26 Aligned_cols=29 Identities=17% Similarity=0.305 Sum_probs=24.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQA 441 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~ 441 (1236)
.++++|.|++||||||+++.|...+....
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~~~~ 29 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLRKEG 29 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHTTT
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 36899999999999999999987665443
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.52 E-value=0.0087 Score=62.43 Aligned_cols=43 Identities=16% Similarity=0.334 Sum_probs=33.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLST 1195 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~t 1195 (1236)
+.+++++||+=. |..+....+.+.+.+...++.+|++|++++-
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~ 173 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSP 173 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccc
Confidence 467999999964 7888888888888765555667889998863
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=95.50 E-value=0.0053 Score=66.83 Aligned_cols=37 Identities=32% Similarity=0.437 Sum_probs=31.8
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
++.|..+.|+||+||||||+++.|+++.+|+.=-|.+
T Consensus 163 v~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 163 IAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HHhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 4556779999999999999999999999887766666
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=95.45 E-value=0.003 Score=63.22 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
++||.||+|||||||.+.|...+.
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l~ 47 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTLR 47 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999976543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.40 E-value=0.0022 Score=64.12 Aligned_cols=26 Identities=35% Similarity=0.569 Sum_probs=23.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+|-++.|+|++||||||+.+.|...+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999999998754
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.30 E-value=0.011 Score=61.73 Aligned_cols=44 Identities=18% Similarity=0.349 Sum_probs=32.5
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
+.+++++||+=. |.......+.+.+.+...+..+|++|++++-+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~~i 174 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMSPI 174 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSCSS
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeeccccch
Confidence 566999999964 77777777877777655555678899887643
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=95.29 E-value=0.0033 Score=62.10 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=25.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEE
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHI 1070 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I 1070 (1236)
+.|+|.|++||||||+++.|...+.....++
T Consensus 2 kiI~i~G~~GsGKsT~~~~L~~~l~~~~~~~ 32 (190)
T d1khta_ 2 KVVVVTGVPGVGSTTSSQLAMDNLRKEGVNY 32 (190)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHTTTCCC
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHcCCCe
Confidence 6799999999999999999988776554443
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.29 E-value=0.0037 Score=60.17 Aligned_cols=23 Identities=35% Similarity=0.397 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||+||||||+.+.|+..+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998754
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=95.28 E-value=0.0035 Score=61.07 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=27.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
..+.|+|++||||||+++.|.+-++ +...++|-++
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~~ 37 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDII 37 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHHH
Confidence 3589999999999999999998874 4555555333
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.27 E-value=0.0021 Score=64.37 Aligned_cols=27 Identities=41% Similarity=0.540 Sum_probs=24.0
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+|-.|.|+|++||||||+.+.|.+.+.
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l~ 44 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYLV 44 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999987653
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=95.21 E-value=0.0029 Score=63.55 Aligned_cols=22 Identities=36% Similarity=0.386 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+||+|++|+|||||++.|.|.
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~ 46 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHhcCC
Confidence 5999999999999999999984
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.17 E-value=0.0041 Score=60.59 Aligned_cols=23 Identities=30% Similarity=0.290 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||+||||||+.+.|+.-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999997654
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=95.17 E-value=0.0069 Score=60.07 Aligned_cols=22 Identities=36% Similarity=0.443 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+||+|++|+|||||++.|+|-
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~ 31 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNK 31 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999874
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=95.14 E-value=0.0037 Score=60.97 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+|.|+|++||||||+.+.|..-+
T Consensus 6 ~I~i~G~pGsGKTTia~~La~~l 28 (173)
T d1rkba_ 6 NILLTGTPGVGKTTLGKELASKS 28 (173)
T ss_dssp CEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997665
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=95.13 E-value=0.0053 Score=61.32 Aligned_cols=27 Identities=33% Similarity=0.639 Sum_probs=24.4
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
|+|=.+.|+||+||||||+.+.|+.-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 578899999999999999999999655
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=95.12 E-value=0.043 Score=55.41 Aligned_cols=24 Identities=33% Similarity=0.585 Sum_probs=18.4
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
..+++|||+|+||||.+.=|...+
T Consensus 12 ~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 12 FVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 468999999999999875554433
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=95.11 E-value=0.004 Score=59.93 Aligned_cols=23 Identities=43% Similarity=0.523 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.|.|+||+||||||+.+.|..-+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58899999999999999998765
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.10 E-value=0.0048 Score=61.14 Aligned_cols=24 Identities=17% Similarity=0.299 Sum_probs=20.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
..+.|+||||+|||||++.|...+
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999887544
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.09 E-value=0.0042 Score=61.50 Aligned_cols=22 Identities=45% Similarity=0.490 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|+|||++|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999873
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=95.06 E-value=0.0022 Score=65.38 Aligned_cols=43 Identities=37% Similarity=0.326 Sum_probs=32.5
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCC--CCcEEEECCeeccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDP--SSGHITLDGVEIQK 1079 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~--~~G~I~idG~di~~ 1079 (1236)
++|..|-|.|.||||||||.+.|..-+.. .--.+.+||-++++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~iR~ 66 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNIRF 66 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHHTT
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHHHH
Confidence 67889999999999999999998753321 12357888866653
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.06 E-value=0.0051 Score=60.92 Aligned_cols=46 Identities=22% Similarity=0.294 Sum_probs=31.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccC-------------CCCcEEEECCeecccCChHHHhc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYD-------------PSSGHITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~-------------~~~G~I~idG~di~~i~~~~lR~ 1087 (1236)
+.+.|+|||||||+||++.|.+-++ |..| ..||+|..=++.+..++
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~~~~~~~~v~~TTR~~R~~--E~~G~dY~Fvs~~~F~~ 62 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPHTTRPPKKD--EENGKNYYFVSHDQMMQ 62 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCEECSCC-----CCBTTTBEECCHHHHHH
T ss_pred CcEEEECCCCCCHHHHHHHHHHhCCcCeeeccccccCCCCCc--cccCccceeeehhhhhh
Confidence 5689999999999999998875432 1223 35677755455555544
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=95.06 E-value=0.0049 Score=61.76 Aligned_cols=26 Identities=31% Similarity=0.448 Sum_probs=22.9
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+..+++|+||+||||||+.+.|+.-|
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~~ 30 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRDF 30 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34689999999999999999998765
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.03 E-value=0.044 Score=56.90 Aligned_cols=22 Identities=27% Similarity=0.403 Sum_probs=20.3
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 040099 1042 IALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+-+.||+|+|||++++.|.+.+
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999764
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.02 E-value=0.054 Score=56.20 Aligned_cols=23 Identities=26% Similarity=0.304 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
-+.+.||+|||||++++.|++.+
T Consensus 44 giLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 44 GVLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eEEEecCCCCChhHHHHHHHHHc
Confidence 37899999999999999999864
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.98 E-value=0.0039 Score=61.97 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||||++++|||||++.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.97 E-value=0.0051 Score=59.39 Aligned_cols=66 Identities=8% Similarity=0.048 Sum_probs=37.6
Q ss_pred ChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHH-HHHHHHHHHHHcCCCeEEEEecCchhhhhcCE
Q 040099 1136 SGGQKQRVAIARAIVKEPKILLLDEATSALDIES-ERVVQDALDQVMVDRTTLVVAHRLSTIKNAHL 1201 (1236)
Q Consensus 1136 SGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~t-e~~I~~~L~~~~~~~TvI~IaHRl~ti~~aD~ 1201 (1236)
...+......+...++++++++++=.-..-+... .....+.++....++.+|+|....+.......
T Consensus 64 ~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~~~~~~~~~~~iilv~NK~Dl~~~~~~ 130 (161)
T d2gj8a1 64 DEVERIGIERAWQEIEQADRVLFMVDGTTTDAVDPAEIWPEFIARLPAKLPITVVRNKADITGETLG 130 (161)
T ss_dssp SHHHHHHHHHHHHHHHTCSEEEEEEETTTCCCCSHHHHCHHHHHHSCTTCCEEEEEECHHHHCCCCE
T ss_pred ccchhHHHHHHHHHHHhccccceeeccccccchhhhhhhhhhhhhcccccceeeccchhhhhhhHHH
Confidence 3455666667777788888766532222222222 22234455555556788888888876554333
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=94.95 E-value=0.066 Score=53.78 Aligned_cols=26 Identities=38% Similarity=0.534 Sum_probs=20.5
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+..+.+|||+|+||||.+.=|...+.
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~~ 35 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYYK 35 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35689999999999998876665553
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.94 E-value=0.0056 Score=59.93 Aligned_cols=22 Identities=36% Similarity=0.537 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|+|+|++|+|||||++.|.|-
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~ 23 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKK 23 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC-
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.91 E-value=0.005 Score=62.73 Aligned_cols=23 Identities=30% Similarity=0.488 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.|||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 48999999999999999887655
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=94.91 E-value=0.0065 Score=60.64 Aligned_cols=27 Identities=33% Similarity=0.596 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
|+|=++.|+||.||||||+.+.|..-|
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La~~~ 27 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLAKNF 27 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHHHHh
Confidence 688999999999999999999999765
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.90 E-value=0.007 Score=65.05 Aligned_cols=46 Identities=20% Similarity=0.399 Sum_probs=33.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCCCCCchhH
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEPVLLSSSI 477 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~~l~~~ti 477 (1236)
++||.|++||||||+.+.|...+.-..+ ..++..+++|.+..+...
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~~~~~-----------------~~~v~~Is~D~F~~~~~~ 127 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLSRWPE-----------------HRRVELITTDGFLHPNQV 127 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHTTSTT-----------------CCCEEEEEGGGGBCCHHH
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHhhhcC-----------------CCceEEEeeeeeECCchH
Confidence 7899999999999999999876642211 125788888887765433
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.79 E-value=0.0056 Score=61.08 Aligned_cols=22 Identities=36% Similarity=0.587 Sum_probs=19.5
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.|+||||||||||++.|...+
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999886654
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.75 E-value=0.017 Score=64.86 Aligned_cols=110 Identities=19% Similarity=0.366 Sum_probs=66.0
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhcceEEEcCCCCCC--hhhHHHHHHHHhhh
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQQMGVVSQEPVLF--SDTIRANIAEMANA 1113 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~~i~~V~Qdp~LF--~gTIreNL~~~a~~ 1113 (1236)
.++=.+-|.|||||||||.+..+++..+....+ ++|- ||.=+ ++-
T Consensus 156 ~~~GliLvtGpTGSGKSTTl~~~l~~~~~~~~~i~tiE---------------------dPiE~~~~~~----------- 203 (401)
T d1p9ra_ 156 RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVE---------------------DPIEFDIDGI----------- 203 (401)
T ss_dssp SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEE---------------------SSCCSCCSSS-----------
T ss_pred hhhceEEEEcCCCCCccHHHHHHhhhhcCCCceEEEec---------------------cCcccccCCC-----------
Confidence 456679999999999999999998876433333 2221 22211 100
Q ss_pred chHHHhhhhchhhhhc-CCCCCCChhHHHHHHHHHHHccCCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecC
Q 040099 1114 NGFISGLQEGYDTLVG-ERGVQLSGGQKQRVAIARAIVKEPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHR 1192 (1236)
Q Consensus 1114 ~~~i~~lp~Gldt~vg-e~G~~LSGGQrQRlaLARALlr~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHR 1192 (1236)
.+ +++. +.+.++ -=+|..+|=+||+|+++.|.. |.+|.+...++ ...|+-|+..-|=
T Consensus 204 ----~q------~~v~~~~~~~~------~~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a~tGhlV~tTlHa 261 (401)
T d1p9ra_ 204 ----GQ------TQVNPRVDMTF------ARGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---SLTGHLVMSTLHT 261 (401)
T ss_dssp ----EE------EECBGGGTBCH------HHHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECC
T ss_pred ----Ce------eeecCCcCCCH------HHHHHHHHhhcCCEEEecCcC---ChHHHHHHHHH---HhcCCeEEEEecc
Confidence 00 0000 111111 224666667799999999987 77777655544 3458888888886
Q ss_pred chhhhhcC
Q 040099 1193 LSTIKNAH 1200 (1236)
Q Consensus 1193 l~ti~~aD 1200 (1236)
-+.+.-.+
T Consensus 262 ~~a~~~~~ 269 (401)
T d1p9ra_ 262 NTAVGAVT 269 (401)
T ss_dssp SSSHHHHH
T ss_pred CchHhhhh
Confidence 55543333
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.75 E-value=0.0049 Score=61.93 Aligned_cols=32 Identities=22% Similarity=0.344 Sum_probs=26.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLID 447 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 447 (1236)
+-.++.|+||+||||||+.+.|+.-| |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 44579999999999999999999877 545554
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=94.70 E-value=0.00076 Score=68.04 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=27.8
Q ss_pred ccceeEEecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1029 FRDLCLTIPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1029 L~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+++.+|++.+| .+.|+|+|||||||++.+|.-.
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 56777788776 8899999999999999998643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=94.70 E-value=0.0047 Score=61.10 Aligned_cols=21 Identities=33% Similarity=0.635 Sum_probs=19.7
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 040099 1042 IALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
|||+|++|+|||||++.|.|-
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999864
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.68 E-value=0.007 Score=61.62 Aligned_cols=23 Identities=30% Similarity=0.491 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++||.|++||||||+.+.|...+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999887654
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=94.64 E-value=0.0077 Score=58.92 Aligned_cols=23 Identities=26% Similarity=0.369 Sum_probs=20.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+|+|+|++|+|||||++.|+|..
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999998743
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=94.63 E-value=0.0067 Score=63.89 Aligned_cols=23 Identities=30% Similarity=0.466 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+|+|+|++|+|||||+|.|+|--
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999853
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.60 E-value=0.0074 Score=59.33 Aligned_cols=22 Identities=41% Similarity=0.514 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|+|+|.+|+|||||++.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999873
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=94.60 E-value=0.0068 Score=59.90 Aligned_cols=22 Identities=32% Similarity=0.344 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.++|||++|+|||||+|.|.|.
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.59 E-value=0.0073 Score=57.87 Aligned_cols=21 Identities=33% Similarity=0.536 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.|||++|+|||||++-|.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998864
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=94.59 E-value=0.018 Score=59.09 Aligned_cols=44 Identities=23% Similarity=0.350 Sum_probs=29.5
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
++.|+++||.= .+.......+...+......+..|+++++.+.+
T Consensus 109 ~~~iilide~d-~~~~~~~~~ll~~l~~~~~~~~~i~~~n~~~~i 152 (231)
T d1iqpa2 109 SFKIIFLDEAD-ALTQDAQQALRRTMEMFSSNVRFILSCNYSSKI 152 (231)
T ss_dssp SCEEEEEETGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CceEEeehhhh-hcchhHHHHHhhhcccCCcceEEEeccCChhhc
Confidence 67899999973 333444445566666555566778888888755
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=94.58 E-value=0.0047 Score=61.01 Aligned_cols=24 Identities=29% Similarity=0.441 Sum_probs=21.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
=+|+|||++++|||||++.|.+-.
T Consensus 17 ~~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 17 IEVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEEECTTSSHHHHHTTTCCC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 459999999999999999998853
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=94.57 E-value=0.0062 Score=61.05 Aligned_cols=34 Identities=32% Similarity=0.455 Sum_probs=28.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEEC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGEVLID 447 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~ 447 (1236)
++++.++.|+||+||||||+.+.|+.-| |-..++
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4678899999999999999999998866 445444
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=94.55 E-value=0.0075 Score=58.24 Aligned_cols=21 Identities=38% Similarity=0.627 Sum_probs=19.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+|+|||++|+|||||++.+.+
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~ 27 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQV 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 599999999999999998865
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.44 E-value=0.0086 Score=59.90 Aligned_cols=31 Identities=29% Similarity=0.501 Sum_probs=25.3
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
...|.|+||+||||||+.+.|..-| |-+.|+
T Consensus 6 p~iI~i~G~pGSGKsT~a~~La~~~----g~~~i~ 36 (194)
T d1qf9a_ 6 PNVVFVLGGPGSGKGTQCANIVRDF----GWVHLS 36 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH----CCceEc
Confidence 3578999999999999999998766 445554
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.43 E-value=0.0083 Score=57.50 Aligned_cols=22 Identities=23% Similarity=0.510 Sum_probs=20.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
|++|||++|+|||||++.|.+=
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999998873
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.42 E-value=0.007 Score=60.57 Aligned_cols=22 Identities=41% Similarity=0.548 Sum_probs=19.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 040099 1042 IALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
|.|+||||||||||++.|..-+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 7899999999999999886543
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.40 E-value=0.017 Score=56.15 Aligned_cols=28 Identities=29% Similarity=0.544 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCc
Q 040099 1041 TIALVGESGSGKSTVISLLQR-----FYDPSSG 1068 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G 1068 (1236)
||+++|.+|+|||||++-+.+ -|+|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 689999999999999987654 3566655
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.34 E-value=0.0079 Score=59.09 Aligned_cols=26 Identities=19% Similarity=0.382 Sum_probs=21.6
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+--|++|||++|+|||||++.|.+=.
T Consensus 12 k~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 12 KTGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CCEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 33479999999999999999997643
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=94.33 E-value=0.0063 Score=60.37 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
-|||+|++++|||||+|.|.|-
T Consensus 3 ~VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 3 DVGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp CEEEESSTTSSHHHHHHHSEEE
T ss_pred eEEEECCCCCCHHHHHHHHhCC
Confidence 3899999999999999999764
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.33 E-value=0.0091 Score=59.69 Aligned_cols=22 Identities=36% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.|+||||||||||++.|...+
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999886543
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=94.29 E-value=0.01 Score=58.47 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+|+|+|++|+|||||++.|.|.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~ 28 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGV 28 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7999999999999999999985
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=94.27 E-value=0.009 Score=58.44 Aligned_cols=24 Identities=29% Similarity=0.337 Sum_probs=20.4
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.+.++|++||||||+.+.|+..+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 456799999999999999997544
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=94.25 E-value=0.0073 Score=64.90 Aligned_cols=24 Identities=33% Similarity=0.509 Sum_probs=21.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.|||.|+|||||||+.+.|.....
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 489999999999999999987764
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=94.23 E-value=0.0085 Score=67.37 Aligned_cols=48 Identities=15% Similarity=0.315 Sum_probs=34.5
Q ss_pred HHHHHHhcCCCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 532 VAIARAMIKDPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 532 iaiARal~~~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
-++..+|=+||||++..|.. |+++.....++ ...|+.|+..-|=-+.+
T Consensus 218 ~~l~~~lR~dPDvi~igEiR---d~~ta~~a~~a---a~tGhlV~tTlHa~~a~ 265 (401)
T d1p9ra_ 218 RGLRAILRQDPDVVMVGEIR---DLETAQIAVQA---SLTGHLVMSTLHTNTAV 265 (401)
T ss_dssp HHHHHHGGGCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEECCSSSH
T ss_pred HHHHHHHhhcCCEEEecCcC---ChHHHHHHHHH---HhcCCeEEEEeccCchH
Confidence 34666788899999999987 67776555443 33588888888865543
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=94.18 E-value=0.0036 Score=60.44 Aligned_cols=22 Identities=32% Similarity=0.498 Sum_probs=20.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|+++|++|+|||||++.|.|-
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6999999999999999999874
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=94.17 E-value=0.047 Score=56.68 Aligned_cols=24 Identities=21% Similarity=0.282 Sum_probs=20.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
..|-+.||+|||||++++.|..-.
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 358899999999999999998643
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=94.17 E-value=0.011 Score=57.43 Aligned_cols=23 Identities=30% Similarity=0.411 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+|++||||||+.+.|+..+
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37899999999999999997655
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=94.14 E-value=0.0045 Score=62.99 Aligned_cols=41 Identities=29% Similarity=0.324 Sum_probs=30.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCCCC--CCcEEEECCeec
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFYDP--QAGEVLIDGVNL 451 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~~~--~~G~i~~~g~~~ 451 (1236)
++|.++-|.|.||||||||.+.|...+.. .--.+.+||.++
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 68899999999999999999998753321 123566776443
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.13 E-value=0.011 Score=57.94 Aligned_cols=22 Identities=32% Similarity=0.463 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+|+|+|.+|+|||||+|.|.|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999999973
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.12 E-value=0.013 Score=59.05 Aligned_cols=27 Identities=22% Similarity=0.421 Sum_probs=24.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+++|+++.|.||+|||||||+.-++.-
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 789999999999999999999776643
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.11 E-value=0.01 Score=59.84 Aligned_cols=22 Identities=32% Similarity=0.587 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|+|||++|+|||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999864
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=94.10 E-value=0.011 Score=61.18 Aligned_cols=23 Identities=43% Similarity=0.739 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++|+||.|||||||++.|++..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~ 24 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYL 24 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHHHH
Confidence 58999999999999999998644
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=94.07 E-value=0.011 Score=56.79 Aligned_cols=24 Identities=21% Similarity=0.439 Sum_probs=21.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
|=.++++|++|+|||||++.|.|.
T Consensus 1 ~~kI~lvG~~nvGKSsLin~l~~~ 24 (161)
T d2gj8a1 1 GMKVVIAGRPNAGKSSLLNALAGR 24 (161)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCEEEEECCCCCCHHHHHHHHhCC
Confidence 346899999999999999999874
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.06 E-value=0.011 Score=59.49 Aligned_cols=22 Identities=23% Similarity=0.455 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+++|+|++|||||||++.|.+-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 7899999999999999999874
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.05 E-value=0.0087 Score=59.97 Aligned_cols=31 Identities=29% Similarity=0.434 Sum_probs=25.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
-..+.|+||+||||||+.+.|..-| |-+.|+
T Consensus 8 ~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 8 VSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp CEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 4569999999999999999999877 445555
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.04 E-value=0.006 Score=64.37 Aligned_cols=52 Identities=27% Similarity=0.360 Sum_probs=37.1
Q ss_pred EEEEEcCCCCChHHHHHHHhccc--CCCCcEEEECCeecccCChHHHhcceEEEc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY--DPSSGHITLDGVEIQKLQVKWLRQQMGVVS 1093 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~--~~~~G~I~idG~di~~i~~~~lR~~i~~V~ 1093 (1236)
.|||+|+.|||||||+..|+..- ....|++. +|..+.+..+++-.+.+++-+
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti~~ 57 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTVRT 57 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCCSC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeEEe
Confidence 48999999999999999885432 12345554 566677777777777766543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=94.02 E-value=0.012 Score=57.88 Aligned_cols=23 Identities=35% Similarity=0.450 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||+||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999997765
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=94.00 E-value=0.012 Score=56.15 Aligned_cols=21 Identities=24% Similarity=0.430 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++.|+|++|||||||++-+.+
T Consensus 2 kivlvG~~~vGKSsLi~~l~~ 22 (160)
T d1r8sa_ 2 RILMVGLDAAGKTTILYKLKL 22 (160)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 578999999999999998865
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.99 E-value=0.013 Score=58.58 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++.|+||+||||||..+.|+.-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998755
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=93.98 E-value=0.11 Score=52.17 Aligned_cols=25 Identities=36% Similarity=0.579 Sum_probs=20.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
..++++|||+|+||||.+--|+..+
T Consensus 10 ~~vi~lvGp~GvGKTTTiaKLA~~~ 34 (207)
T d1ls1a2 10 RNLWFLVGLQGSGKTTTAAKLALYY 34 (207)
T ss_dssp SEEEEEECCTTTTHHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHH
Confidence 4578999999999999887776555
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=93.96 E-value=0.13 Score=51.54 Aligned_cols=25 Identities=40% Similarity=0.623 Sum_probs=20.3
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
..+++|||+|+||||.+.=|...+.
T Consensus 10 ~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 10 FVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4689999999999998866666554
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=93.92 E-value=0.0085 Score=59.10 Aligned_cols=21 Identities=33% Similarity=0.596 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 040099 416 AALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
|||+|++|+|||||++.|.|.
T Consensus 4 VaivG~~nvGKSTLin~L~~~ 24 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRA 24 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSS
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 899999999999999999874
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.88 E-value=0.022 Score=55.16 Aligned_cols=37 Identities=35% Similarity=0.592 Sum_probs=26.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhc-----ccCCCCcE-----EEECCee
Q 040099 1040 KTIALVGESGSGKSTVISLLQR-----FYDPSSGH-----ITLDGVE 1076 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G~-----I~idG~d 1076 (1236)
-||+|+|++|+|||||++.+.. -|.|+-|. +.+||.+
T Consensus 5 ~Kv~liG~~~vGKTsLl~~~~~~~f~~~~~~t~~~~~~~~~~~~~~~ 51 (167)
T d1xtqa1 5 RKIAILGYRSVGKSSLTIQFVEGQFVDSYDPTIENTFTKLITVNGQE 51 (167)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHSCCCSCCCSSCCEEEEEEEEETTEE
T ss_pred eEEEEECCCCcCHHHHHHHHHhCCCCcccCcceecccceEEecCcEE
Confidence 3799999999999999998753 23455443 4567654
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=93.85 E-value=0.014 Score=56.29 Aligned_cols=22 Identities=27% Similarity=0.419 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.++|||++|||||||++.+.+-
T Consensus 7 kI~ivG~~~vGKSSLi~~~~~~ 28 (169)
T d1upta_ 7 RILILGLDGAGKTTILYRLQVG 28 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4899999999999999988764
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.84 E-value=0.014 Score=57.69 Aligned_cols=23 Identities=35% Similarity=0.459 Sum_probs=20.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998766
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.83 E-value=0.011 Score=58.90 Aligned_cols=23 Identities=35% Similarity=0.486 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|.||+||||||+.+.|+.-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47799999999999999998766
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.78 E-value=0.013 Score=59.05 Aligned_cols=42 Identities=29% Similarity=0.461 Sum_probs=29.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcce
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQM 1089 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i 1089 (1236)
.|.+||++||||||+++.|.+.+... |.+..-++.+.+|+.+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~~~-------~~~~~~~~~D~~r~~~ 45 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLNFI-------GVPTREFNVGQYRRDM 45 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHT-------TCCEEEEEHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhc-------CCCCeEEcccceehhh
Confidence 58999999999999999999876522 3333344555566554
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=93.78 E-value=0.012 Score=56.94 Aligned_cols=29 Identities=38% Similarity=0.503 Sum_probs=23.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
.+.|+|++||||||+.+.|..-+ |--++|
T Consensus 2 ~I~liG~~GsGKsTi~k~La~~l----~~~~~d 30 (161)
T d1viaa_ 2 NIVFIGFMGSGKSTLARALAKDL----DLVFLD 30 (161)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH----TCEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHHh----CCCEEe
Confidence 48899999999999999997765 334554
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.76 E-value=0.015 Score=57.41 Aligned_cols=21 Identities=19% Similarity=0.422 Sum_probs=19.7
Q ss_pred EEEEcCCCCcHHHHHHHHHcC
Q 040099 416 AALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+||||++.+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 899999999999999999874
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.76 E-value=0.014 Score=55.68 Aligned_cols=22 Identities=18% Similarity=0.421 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+++++|++|+|||||++.|.+-
T Consensus 2 KI~liG~~nvGKSSLln~l~~~ 23 (166)
T d2qtvb1 2 KLLFLGLDNAGKTTLLHMLKND 23 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5789999999999999999874
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=93.66 E-value=0.015 Score=56.54 Aligned_cols=22 Identities=45% Similarity=0.578 Sum_probs=19.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.++|++||||||+.++|+..+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5688999999999999998655
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.66 E-value=0.033 Score=54.07 Aligned_cols=28 Identities=29% Similarity=0.472 Sum_probs=22.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-----CCCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLIQR-----FYDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 442 (1236)
+++++|.+|+|||||++-+.+ .|.|+-|
T Consensus 4 Ki~viG~~~vGKTsLi~r~~~~~f~~~~~~T~~ 36 (171)
T d2erxa1 4 RVAVFGAGGVGKSSLVLRFVKGTFRESYIPTVE 36 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHTCCCCSSCCCCSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCccee
Confidence 479999999999999987664 3456655
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=93.63 E-value=0.014 Score=57.11 Aligned_cols=24 Identities=38% Similarity=0.468 Sum_probs=20.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+.+.|+|++||||||+.+.|..-+
T Consensus 3 ~~Iil~G~~GsGKSTia~~LA~~L 26 (170)
T d1e6ca_ 3 EPIFMVGARGCGMTTVGRELARAL 26 (170)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCEEEECCCCCCHHHHHHHHHHHh
Confidence 457899999999999999997654
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=93.59 E-value=0.016 Score=58.41 Aligned_cols=24 Identities=21% Similarity=0.526 Sum_probs=21.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+++++|.+||||||+.+.|++.+.
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l~ 27 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYLN 27 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999997553
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=93.58 E-value=0.018 Score=59.48 Aligned_cols=24 Identities=33% Similarity=0.702 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.|+|+|+.|||||||++.|.+...
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~~~~ 25 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGRYLE 25 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHh
Confidence 589999999999999999987543
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.56 E-value=0.011 Score=58.36 Aligned_cols=25 Identities=36% Similarity=0.640 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+++.|.|++||||||+++.|...+.
T Consensus 2 kiivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 2 KIGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3678899999999999999987663
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=93.56 E-value=0.076 Score=55.60 Aligned_cols=54 Identities=24% Similarity=0.401 Sum_probs=37.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCeecCCCCHHHHhcceEE
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
=++.|.++-|.||+|||||||+..++....-..| -+++|.+. .++++.+ +++|+
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~aqk~g~~v~yiDtE~--~~~~~~a-~~~Gv 107 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEH--ALDPVYA-RALGV 107 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSC--CCCHHHH-HHTTC
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHHHhCCCEEEEEECCc--cCCHHHH-HHhCC
Confidence 4789999999999999999999888776654444 35666542 3444433 34454
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=93.55 E-value=0.017 Score=58.73 Aligned_cols=23 Identities=26% Similarity=0.466 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++|.||+||||||+.+.|..-|
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~ 27 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEAL 27 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 89999999999999999998765
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=93.54 E-value=0.013 Score=65.68 Aligned_cols=28 Identities=39% Similarity=0.663 Sum_probs=23.2
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSG 1068 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G 1068 (1236)
.|||+|++|+|||||+|.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999986543333
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=93.54 E-value=0.014 Score=58.45 Aligned_cols=34 Identities=35% Similarity=0.491 Sum_probs=28.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
++.+..|.|+||.||||||+.+.|..-| |-..|+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~----g~~~is 38 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY----GYTHLS 38 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT----CCEEEE
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh----CCeeEe
Confidence 4677889999999999999999998866 444554
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.52 E-value=0.015 Score=57.81 Aligned_cols=21 Identities=48% Similarity=0.744 Sum_probs=19.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++||.|++||||||+.+.|..
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999864
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=93.51 E-value=0.016 Score=57.09 Aligned_cols=21 Identities=24% Similarity=0.515 Sum_probs=19.8
Q ss_pred EEEEcCCCCChHHHHHHHhcc
Q 040099 1042 IALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
|||||+..+|||||++.|.+.
T Consensus 8 IaiiG~~naGKSTL~n~L~~~ 28 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEI 28 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTT
T ss_pred EEEEeCCCCcHHHHHHHHHHh
Confidence 999999999999999999864
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=93.50 E-value=0.015 Score=57.79 Aligned_cols=22 Identities=50% Similarity=0.792 Sum_probs=19.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||+|++||||||+++.|..+
T Consensus 5 IIgitG~~gSGKstva~~l~~~ 26 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRSW 26 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHC
Confidence 5899999999999999998654
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.50 E-value=0.019 Score=57.82 Aligned_cols=28 Identities=25% Similarity=0.361 Sum_probs=24.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
-+++|+.+-|.||+||||||+..-++.-
T Consensus 19 Gi~~G~v~~i~G~~GsGKT~l~l~la~~ 46 (242)
T d1n0wa_ 19 GIETGSITEMFGEFRTGKTQICHTLAVT 46 (242)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcCCEEEEEEeCCCCCHHHHHHHHHHH
Confidence 4899999999999999999998766543
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=93.49 E-value=0.013 Score=57.36 Aligned_cols=25 Identities=16% Similarity=0.327 Sum_probs=21.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.-+++|||++|||||||++.|.+-.
T Consensus 13 ~~kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 13 TGKLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp CEEEEEEEETTSSHHHHHHHHSCC-
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3478999999999999999997754
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.47 E-value=0.017 Score=55.81 Aligned_cols=23 Identities=17% Similarity=0.356 Sum_probs=20.5
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
||+|||++|+|||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 68999999999999999987743
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=93.44 E-value=0.017 Score=58.84 Aligned_cols=23 Identities=39% Similarity=0.538 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++|-||+||||||+.++|+.-|
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 57899999999999999998765
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=93.39 E-value=0.018 Score=58.05 Aligned_cols=27 Identities=37% Similarity=0.797 Sum_probs=22.4
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
++.++++|||+|+||||.+-=|+..+.
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~~~~ 31 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGRYYQ 31 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999998866666554
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.39 E-value=0.013 Score=60.61 Aligned_cols=27 Identities=19% Similarity=0.412 Sum_probs=24.3
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
++++++|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 478999999999999999999998763
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=93.39 E-value=0.018 Score=56.66 Aligned_cols=23 Identities=30% Similarity=0.517 Sum_probs=20.7
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+|.|+||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1zina1 2 NLVLMGLPGAGKGTQAEKIVAAY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999997766
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.38 E-value=0.014 Score=60.35 Aligned_cols=27 Identities=30% Similarity=0.541 Sum_probs=24.5
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+++.|+|-|+.||||||++++|...++
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 468899999999999999999998874
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=93.36 E-value=0.023 Score=54.89 Aligned_cols=23 Identities=17% Similarity=0.274 Sum_probs=20.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++|+|++|||||||++.|.+-.
T Consensus 4 ki~ivG~~~~GKTsLi~~l~~~~ 26 (165)
T d1ksha_ 4 RLLMLGLDNAGKTTILKKFNGED 26 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHTTCC
T ss_pred EEEEECCCCCCHHHHHHHHcCCC
Confidence 58899999999999999998754
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.32 E-value=0.07 Score=54.26 Aligned_cols=44 Identities=18% Similarity=0.309 Sum_probs=31.8
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
+.+++++||+= .+.......+...|.+.....-++++++....+
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~i 142 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHKL 142 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGGS
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHHh
Confidence 34799999985 577778888888887765555566677766543
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=93.24 E-value=0.018 Score=60.44 Aligned_cols=23 Identities=26% Similarity=0.354 Sum_probs=21.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++|+|++|+|||||+|.|.|..
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 48999999999999999999854
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=93.22 E-value=0.02 Score=55.87 Aligned_cols=21 Identities=24% Similarity=0.597 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999998764
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=93.20 E-value=0.016 Score=57.66 Aligned_cols=23 Identities=30% Similarity=0.536 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++.|.||+||||||+.+.|..-|
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~~ 27 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTKY 27 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998776
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=93.20 E-value=0.019 Score=56.40 Aligned_cols=23 Identities=30% Similarity=0.403 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||+||||||+.+.|+--|
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~ 24 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKY 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47899999999999999998655
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=93.20 E-value=0.02 Score=56.52 Aligned_cols=23 Identities=35% Similarity=0.537 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+|.|+||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999999877
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=93.16 E-value=0.015 Score=57.28 Aligned_cols=24 Identities=33% Similarity=0.486 Sum_probs=21.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.+.|.|++||||||+++.|...+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 466789999999999999988775
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.02 Score=56.94 Aligned_cols=23 Identities=26% Similarity=0.486 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+|.|+||.||||||..+.|..-|
T Consensus 3 iI~i~GppGSGKsT~a~~La~~~ 25 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEKY 25 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998765
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.13 E-value=0.04 Score=53.39 Aligned_cols=28 Identities=32% Similarity=0.610 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCc
Q 040099 1041 TIALVGESGSGKSTVISLLQR-----FYDPSSG 1068 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G 1068 (1236)
||.+||.+|+|||||++-+.. -|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 689999999999999987763 4455544
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=93.09 E-value=0.018 Score=57.47 Aligned_cols=25 Identities=24% Similarity=0.433 Sum_probs=22.3
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.-+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998765
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=93.08 E-value=0.012 Score=58.03 Aligned_cols=23 Identities=26% Similarity=0.384 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.++|+|++++|||||+|.|.+..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 59999999999999999998753
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.08 E-value=0.037 Score=53.72 Aligned_cols=29 Identities=31% Similarity=0.536 Sum_probs=22.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCcE
Q 040099 1041 TIALVGESGSGKSTVISLLQR-----FYDPSSGH 1069 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G~ 1069 (1236)
||.|||.+|+|||||++-+.. -|.|+.|.
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~ 40 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIED 40 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCccccc
Confidence 699999999999999987643 34566554
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=93.06 E-value=0.041 Score=53.35 Aligned_cols=36 Identities=33% Similarity=0.620 Sum_probs=26.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCcE-----EEECCee
Q 040099 1041 TIALVGESGSGKSTVISLLQR-----FYDPSSGH-----ITLDGVE 1076 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G~-----I~idG~d 1076 (1236)
||.++|.+|+|||||++-+.. -|.|+.|. +.+||.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~~~~~~~~~~~~~ 51 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKADSYRKKVVLDGEE 51 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCEEEEEEEEETTEE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccccccccccccccc
Confidence 799999999999999988752 35566553 3456544
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=93.02 E-value=0.041 Score=53.17 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|++|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998754
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.94 E-value=0.024 Score=55.78 Aligned_cols=23 Identities=26% Similarity=0.351 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|.||+||||||+.+.|+.-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=92.92 E-value=0.018 Score=55.85 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++.++|++||||||+.++|..-+
T Consensus 3 ~IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 3 KAVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHH
T ss_pred cEEEECCCCCCHHHHHHHHHHHh
Confidence 37788999999999999997666
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.89 E-value=0.016 Score=63.02 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.2
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
.-+|||+|+.|||||||++.|.+.+..
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~~ 80 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLIR 80 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHHh
Confidence 467999999999999999999876643
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.85 E-value=0.028 Score=54.76 Aligned_cols=21 Identities=24% Similarity=0.461 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||++|+|||||++.+.+
T Consensus 4 Ki~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 4 KVIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 489999999999999998764
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.85 E-value=0.026 Score=57.18 Aligned_cols=27 Identities=26% Similarity=0.326 Sum_probs=24.1
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++|.+++|-|+-||||||++++|...+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987654
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=92.82 E-value=0.022 Score=56.76 Aligned_cols=24 Identities=29% Similarity=0.562 Sum_probs=22.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
-.|+|-|..||||||++++|.+.+
T Consensus 10 ~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 10 FTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGGT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 479999999999999999998866
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=92.80 E-value=0.024 Score=55.28 Aligned_cols=25 Identities=20% Similarity=0.396 Sum_probs=21.4
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
++.=+|.|||+.|||||||++-|.+
T Consensus 13 ~k~~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 13 HQEHKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp TSCEEEEEEESTTSSHHHHHHHHHT
T ss_pred CCeEEEEEECCCCCCHHHHHHHHhc
Confidence 3344799999999999999998876
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=92.76 E-value=0.024 Score=57.69 Aligned_cols=24 Identities=38% Similarity=0.585 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+|+|-||+||||||+.++|..-|.
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~lg 28 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDFG 28 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987664
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.73 E-value=0.027 Score=56.87 Aligned_cols=26 Identities=19% Similarity=0.354 Sum_probs=23.6
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+|.+++|-|+-||||||+++.|...+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998654
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=92.70 E-value=0.021 Score=59.90 Aligned_cols=33 Identities=33% Similarity=0.362 Sum_probs=26.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDG 448 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g 448 (1236)
..+.++||+|||||||++.|++.+.. +-+.+++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 35889999999999999999997742 3445554
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.64 E-value=0.026 Score=56.93 Aligned_cols=20 Identities=45% Similarity=0.718 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~ 434 (1236)
++||.|+.||||||+.+.+.
T Consensus 4 iIgITG~igSGKStv~~~l~ 23 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFT 23 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999999885
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=92.63 E-value=0.0095 Score=57.31 Aligned_cols=22 Identities=27% Similarity=0.382 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.++++|++|+|||||++.|.|.
T Consensus 2 kI~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 2 RMVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEEECCHHHHTCHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999874
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=92.60 E-value=0.026 Score=55.42 Aligned_cols=24 Identities=29% Similarity=0.459 Sum_probs=21.3
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
++.|+||.||||||+.+.|..-|.
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~~~~ 25 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIMEKYG 25 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 588999999999999999987663
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.56 E-value=0.054 Score=52.40 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=22.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-----CCCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLIQR-----FYDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G 442 (1236)
++++||++|+|||||++-+.. .|+|+-|
T Consensus 4 Ki~lvG~~~vGKTsli~r~~~~~f~~~~~pTi~ 36 (168)
T d2atva1 4 KLAIFGRAGVGKSALVVRFLTKRFIWEYDPTLE 36 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSCCCSCCCTTCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCCccCCcee
Confidence 478999999999999987764 3455544
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.54 E-value=0.027 Score=54.75 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+.+||++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 589999999999999997753
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=92.52 E-value=0.019 Score=62.32 Aligned_cols=26 Identities=27% Similarity=0.340 Sum_probs=22.7
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
.-++||+||+|||||||++-|.+.+.
T Consensus 54 ~~~IgitG~pGaGKSTLi~~l~~~~~ 79 (327)
T d2p67a1 54 TLRLGVTGTPGAGKSTFLEAFGMLLI 79 (327)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred ceEEEeeCCCCCCHHHHHHHHHHHHH
Confidence 45899999999999999999987653
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=92.49 E-value=0.027 Score=56.79 Aligned_cols=21 Identities=38% Similarity=0.675 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
.|||+|..||||||+.+.|..
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 589999999999999998853
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.48 E-value=0.053 Score=52.50 Aligned_cols=20 Identities=30% Similarity=0.592 Sum_probs=18.0
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
|+++||.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~ 24 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFV 24 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 78999999999999998654
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=92.46 E-value=0.03 Score=55.65 Aligned_cols=23 Identities=48% Similarity=0.713 Sum_probs=21.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||.||||||+.+.|+--|
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 67899999999999999998766
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=92.42 E-value=0.03 Score=56.74 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.|+|-||.||||||+.+.|..-|.
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~g 28 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQ 28 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 799999999999999999987664
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.39 E-value=0.03 Score=56.26 Aligned_cols=22 Identities=23% Similarity=0.329 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 040099 414 TIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
..|+|+|++|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3689999999999999999876
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.38 E-value=0.029 Score=56.47 Aligned_cols=22 Identities=27% Similarity=0.434 Sum_probs=19.9
Q ss_pred CEEEEEcCCCCChHHHHHHHhc
Q 040099 1040 KTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
..|+|+|+.|+|||||++.|.+
T Consensus 1 k~V~ivG~~~~GKTsLl~~l~~ 22 (207)
T d2fh5b1 1 RAVLFVGLCDSGKTLLFVRLLT 22 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 3699999999999999999875
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.29 E-value=0.034 Score=56.26 Aligned_cols=28 Identities=32% Similarity=0.251 Sum_probs=24.8
Q ss_pred cCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1037 PPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1037 ~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
++|..|+|.|+-||||||++++|..-+.
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L~ 28 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEALC 28 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 5799999999999999999999977553
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=92.28 E-value=0.042 Score=53.59 Aligned_cols=33 Identities=30% Similarity=0.353 Sum_probs=26.5
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
.++.-.+.+ .|.=|.|.|+||+||||++..|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666 788899999999999999977653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.25 E-value=0.091 Score=53.35 Aligned_cols=44 Identities=18% Similarity=0.306 Sum_probs=30.4
Q ss_pred CCCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1152 EPKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1152 ~p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
+.+++++||+-. +.......+...+.+....+..+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 468999999874 44445555666666655566777888887654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=92.23 E-value=0.043 Score=52.75 Aligned_cols=21 Identities=24% Similarity=0.536 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||++||..|+|||||++-+..
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999998763
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.18 E-value=0.035 Score=54.59 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=20.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|+||.||||||+.+.|+-.|
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~ 26 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF 26 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999999999998765
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.10 E-value=0.033 Score=53.75 Aligned_cols=21 Identities=29% Similarity=0.520 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||++||++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999986653
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.08 E-value=0.047 Score=52.58 Aligned_cols=21 Identities=29% Similarity=0.417 Sum_probs=18.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|++|+|||||++-+.+
T Consensus 4 Kv~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 4 KMVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 388999999999999986653
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=92.06 E-value=0.035 Score=57.03 Aligned_cols=25 Identities=28% Similarity=0.506 Sum_probs=23.1
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
+++|+++-|.||+|||||||..-++
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 8999999999999999999997664
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=92.05 E-value=0.032 Score=54.37 Aligned_cols=21 Identities=33% Similarity=0.551 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||++||++|+|||||++-|.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 689999999999999998754
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=92.05 E-value=0.29 Score=50.78 Aligned_cols=23 Identities=26% Similarity=0.381 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
-+-+.||+|+|||++++.+.+..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 38899999999999999999865
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.92 E-value=0.061 Score=52.11 Aligned_cols=30 Identities=30% Similarity=0.444 Sum_probs=22.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-----CCCCCCcEE
Q 040099 415 IAALVGTSGSGKSTVISLIQR-----FYDPQAGEV 444 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~i 444 (1236)
+++++|.+|+|||||++-+.+ -|.|+.|..
T Consensus 7 Ki~lvG~~~vGKTsLi~r~~~~~f~~~~~~t~~~~ 41 (171)
T d2erya1 7 RLVVVGGGGVGKSALTIQFIQSYFVTDYDPTIEDS 41 (171)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSCCCSSCCTTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhCCCCcccCcccccc
Confidence 589999999999999986643 334666643
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.88 E-value=0.04 Score=55.94 Aligned_cols=27 Identities=19% Similarity=0.388 Sum_probs=24.5
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+|.+++|-|+-||||||++++|...+.
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986554
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=91.87 E-value=0.031 Score=56.31 Aligned_cols=26 Identities=31% Similarity=0.580 Sum_probs=20.8
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
-.++++|||+|+||||.+-=|+..+.
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~ 34 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE 34 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999998866665554
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=91.87 E-value=0.038 Score=54.26 Aligned_cols=23 Identities=30% Similarity=0.434 Sum_probs=21.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
++.|.||.||||||+.+.|..-|
T Consensus 2 ~I~i~G~pGsGKsT~a~~La~~~ 24 (181)
T d2cdna1 2 RVLLLGPPGAGKGTQAVKLAEKL 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998776
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=91.85 E-value=0.25 Score=50.60 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=32.2
Q ss_pred CCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 542 PRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 542 p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
.+++|+||+=. |+......+.+.+++...+...|++|++++-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 46999999964 77777777777776655566788899887654
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=91.84 E-value=0.037 Score=53.79 Aligned_cols=22 Identities=23% Similarity=0.397 Sum_probs=20.0
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 040099 414 TIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
=+++++|.+|||||||++-|.+
T Consensus 16 ~kI~vvG~~~~GKSsLi~rl~~ 37 (177)
T d1zj6a1 16 HKVIIVGLDNAGKTTILYQFSM 37 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHhc
Confidence 3689999999999999998876
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=91.79 E-value=0.024 Score=59.87 Aligned_cols=24 Identities=33% Similarity=0.617 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.|||.|+|||||||+.+.|...+.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 699999999999999999877654
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.75 E-value=0.036 Score=53.53 Aligned_cols=21 Identities=33% Similarity=0.553 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||++||++|+|||||++.+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 699999999999999987754
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.74 E-value=0.076 Score=51.28 Aligned_cols=28 Identities=25% Similarity=0.411 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH-cC----CCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLIQ-RF----YDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~-~~----~~~~~G 442 (1236)
++++||..|+|||||++-+. +- |+|+.|
T Consensus 5 Ki~vvG~~~vGKTsLi~~~~~~~f~~~~~~t~~ 37 (170)
T d1ek0a_ 5 KLVLLGEAAVGKSSIVLRFVSNDFAENKEPTIG 37 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCTTCCCCSS
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccccccc
Confidence 58899999999999998655 43 345555
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.73 E-value=0.038 Score=54.40 Aligned_cols=21 Identities=24% Similarity=0.624 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||++||.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999987763
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=91.72 E-value=0.077 Score=51.28 Aligned_cols=29 Identities=28% Similarity=0.486 Sum_probs=22.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc-----CCCCCCcE
Q 040099 415 IAALVGTSGSGKSTVISLIQR-----FYDPQAGE 443 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~-----~~~~~~G~ 443 (1236)
++.++|.+|+|||||++-+.. .|.|+.|.
T Consensus 6 KivlvG~~~vGKTsli~~~~~~~f~~~~~~T~~~ 39 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMYDEFVEDYEPTKAD 39 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSCCCSCCCTTCCE
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCCcccc
Confidence 689999999999999997653 34566553
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=91.71 E-value=0.042 Score=61.45 Aligned_cols=28 Identities=32% Similarity=0.546 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
.+||+|++|+|||||+|.|.|...-..|
T Consensus 58 ~Iai~G~~n~GKSSLiNaL~G~~~~~~~ 85 (400)
T d1tq4a_ 58 NVAVTGETGSGKSSFINTLRGIGNEEEG 85 (400)
T ss_dssp EEEEEECTTSSHHHHHHHHHTCCTTSTT
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCc
Confidence 4899999999999999999996543344
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.68 E-value=0.072 Score=52.86 Aligned_cols=21 Identities=33% Similarity=0.600 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||+|||+.|+|||||++-+..
T Consensus 8 KivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 8 KLLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhh
Confidence 489999999999999997663
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=91.64 E-value=0.049 Score=51.97 Aligned_cols=31 Identities=19% Similarity=0.195 Sum_probs=27.0
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
..+||.++++.|+=||||||+.|.+++-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 3478999999999999999999999877643
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.64 E-value=0.039 Score=53.13 Aligned_cols=21 Identities=33% Similarity=0.556 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+++++|++|+|||||++.|..
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 689999999999999997743
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=91.54 E-value=0.045 Score=55.16 Aligned_cols=27 Identities=26% Similarity=0.407 Sum_probs=24.2
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+|..|+|-|+-||||||+++.|...++
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L~ 27 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETLE 27 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999999987654
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.49 E-value=0.041 Score=53.65 Aligned_cols=21 Identities=43% Similarity=0.814 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+++||+.|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987644
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.47 E-value=0.071 Score=52.03 Aligned_cols=21 Identities=29% Similarity=0.563 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+++++|.+|+|||||++-+..
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999986654
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.38 E-value=0.046 Score=53.82 Aligned_cols=21 Identities=29% Similarity=0.504 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||+|||++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 489999999999999988764
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=91.36 E-value=0.047 Score=52.90 Aligned_cols=21 Identities=19% Similarity=0.319 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 7 KILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHc
Confidence 389999999999999997754
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=91.33 E-value=0.046 Score=55.15 Aligned_cols=21 Identities=52% Similarity=0.640 Sum_probs=19.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++||+|+.||||||+.+.+..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.33 E-value=0.045 Score=52.84 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.+||.+|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987754
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.32 E-value=0.048 Score=52.79 Aligned_cols=23 Identities=26% Similarity=0.494 Sum_probs=20.0
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
||+++|.+|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 68999999999999999887653
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=91.26 E-value=0.038 Score=56.84 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=22.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQ 440 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~ 440 (1236)
.+.+.||+|+||||++++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 36899999999999999999877654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=91.26 E-value=0.032 Score=56.37 Aligned_cols=27 Identities=22% Similarity=0.485 Sum_probs=20.3
Q ss_pred cCCcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 411 PNGTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 411 ~~g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+-.++++|||+|+||||.+-=|+..+
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~ 35 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMF 35 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHH
Confidence 345589999999999998875555443
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=91.23 E-value=0.049 Score=52.40 Aligned_cols=21 Identities=38% Similarity=0.494 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++++|++|+|||||++.+.+
T Consensus 4 ki~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 4 ELTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 478999999999999997754
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=91.21 E-value=0.044 Score=58.96 Aligned_cols=25 Identities=16% Similarity=0.396 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.-+.++||+|||||+|++.|++.+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~ 73 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLA 73 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHhhcc
Confidence 3456789999999999999999875
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.12 E-value=0.036 Score=58.56 Aligned_cols=22 Identities=32% Similarity=0.327 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||-|++|||||||...|...
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 5899999999999999876433
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=91.03 E-value=0.053 Score=55.93 Aligned_cols=27 Identities=19% Similarity=0.163 Sum_probs=24.0
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
=|++|+++.|.||+||||||+..-++.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 389999999999999999999976653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.02 E-value=0.048 Score=52.60 Aligned_cols=21 Identities=38% Similarity=0.650 Sum_probs=18.7
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+.+||.+|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999997753
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=90.99 E-value=0.21 Score=51.13 Aligned_cols=43 Identities=19% Similarity=0.186 Sum_probs=32.0
Q ss_pred CCEEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEecCchhh
Q 040099 1153 PKILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAHRLSTI 1196 (1236)
Q Consensus 1153 p~ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaHRl~ti 1196 (1236)
.+|+|+||+=. |+.+....+.+.+.+...++..|++|++.+-+
T Consensus 116 ~kviiIde~d~-l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECccc-CCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 47999999954 77777666777776544567788899998754
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.99 E-value=0.062 Score=52.18 Aligned_cols=23 Identities=35% Similarity=0.638 Sum_probs=20.3
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
||.+||.+|+|||||++.+.+-.
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~ 27 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVH 27 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCc
Confidence 68999999999999999887644
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=90.99 E-value=0.052 Score=56.02 Aligned_cols=24 Identities=29% Similarity=0.504 Sum_probs=22.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHH
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLI 433 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll 433 (1236)
+++|+++.|.||+|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 899999999999999999998644
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.98 E-value=0.067 Score=52.03 Aligned_cols=25 Identities=32% Similarity=0.327 Sum_probs=21.0
Q ss_pred ecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 1036 IPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
.-.|.=|.|+|+||+||||++..|.
T Consensus 11 ~~~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 11 DIYGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EETTEEEEEECCTTSCHHHHHHHHH
T ss_pred EECCEEEEEEeCCCCCHHHHHHHHH
Confidence 3457789999999999999987655
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.98 E-value=0.091 Score=50.94 Aligned_cols=20 Identities=30% Similarity=0.531 Sum_probs=17.8
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 040099 416 AALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++|++|+|||||++-+.+
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 88999999999999976654
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.95 E-value=0.053 Score=56.13 Aligned_cols=25 Identities=32% Similarity=0.441 Sum_probs=21.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
..+.|.||+|+||||++++|++.+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 3578999999999999999998764
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.94 E-value=0.051 Score=52.87 Aligned_cols=20 Identities=25% Similarity=0.589 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||.+||++|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFT 24 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHh
Confidence 58999999999999999765
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.92 E-value=0.056 Score=54.75 Aligned_cols=27 Identities=30% Similarity=0.416 Sum_probs=24.7
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+|..|+|-|+-||||||++++|...++
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~ 28 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQ 28 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHH
Confidence 799999999999999999999986665
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.90 E-value=0.099 Score=51.78 Aligned_cols=20 Identities=35% Similarity=0.539 Sum_probs=18.0
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 040099 416 AALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++|+|+.|+|||||++-+..
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 89999999999999997664
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=90.89 E-value=0.054 Score=53.69 Aligned_cols=24 Identities=38% Similarity=0.616 Sum_probs=21.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
=++.|+||.||||||+.+.|..-|
T Consensus 7 mrIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 7 LRAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHB
T ss_pred eeEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999998766
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=90.87 E-value=0.046 Score=57.55 Aligned_cols=31 Identities=16% Similarity=0.229 Sum_probs=28.0
Q ss_pred EEecCCCEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1034 LTIPPGKTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1034 ~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+.|-+||+.+|+|++|+|||||+..+.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5889999999999999999999999988543
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.86 E-value=0.06 Score=52.34 Aligned_cols=21 Identities=29% Similarity=0.608 Sum_probs=18.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.+||++|+|||||++-+.+
T Consensus 8 KI~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 8 KVILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999977654
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=90.85 E-value=0.047 Score=53.07 Aligned_cols=21 Identities=24% Similarity=0.445 Sum_probs=19.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.+++||++|+|||||++-+.+
T Consensus 18 kI~vvG~~~vGKSsLi~~l~~ 38 (176)
T d1fzqa_ 18 RILLLGLDNAGKTTLLKQLAS 38 (176)
T ss_dssp EEEEEESTTSSHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999998855
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.85 E-value=0.057 Score=55.32 Aligned_cols=26 Identities=31% Similarity=0.438 Sum_probs=23.5
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
-+++|+.+-|.|++||||||+..-+.
T Consensus 30 Gi~~G~~~li~G~pGsGKT~l~lq~~ 55 (251)
T d1szpa2 30 GVETGSITELFGEFRTGKSQLCHTLA 55 (251)
T ss_dssp SEESSSEEEEEESTTSSHHHHHHHHT
T ss_pred CCcCCeEEEEEcCCCCCHHHHHHHHH
Confidence 59999999999999999999997654
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.82 E-value=0.093 Score=50.23 Aligned_cols=21 Identities=19% Similarity=0.363 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|..|+|||||++-+.+
T Consensus 2 Kv~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 2 KLVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.81 E-value=0.051 Score=52.71 Aligned_cols=21 Identities=29% Similarity=0.672 Sum_probs=19.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|+.|+|.+|+|||||++.+..
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=90.76 E-value=0.062 Score=54.67 Aligned_cols=31 Identities=26% Similarity=0.338 Sum_probs=24.6
Q ss_pred cccceeE-EecCCcEEEEEcCCCCcHHHHHHH
Q 040099 402 ILNGFCL-LIPNGTIAALVGTSGSGKSTVISL 432 (1236)
Q Consensus 402 ~l~~i~~-~i~~g~~~~ivG~sGsGKSTl~~l 432 (1236)
-|+++-- -+++|+++.|.|++|+|||||+.-
T Consensus 14 ~LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 14 GFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp THHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 4554432 389999999999999999999853
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.73 E-value=0.058 Score=52.52 Aligned_cols=21 Identities=43% Similarity=0.673 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||++|+|||||++-+.+
T Consensus 6 Ki~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 6 KVVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999997654
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=90.68 E-value=0.055 Score=54.50 Aligned_cols=22 Identities=45% Similarity=0.637 Sum_probs=19.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||+|..||||||..+.|..+
T Consensus 5 iIgitG~igSGKStv~~~l~~~ 26 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFADL 26 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHHT
T ss_pred EEEEECCCcCCHHHHHHHHHHC
Confidence 5899999999999999988643
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.67 E-value=0.071 Score=51.32 Aligned_cols=21 Identities=29% Similarity=0.446 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|++|+|||||++-+.+
T Consensus 5 Ki~viG~~~vGKTsli~~l~~ 25 (166)
T d1ctqa_ 5 KLVVVGAGGVGKSALTIQLIQ 25 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 489999999999999987764
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=90.65 E-value=0.087 Score=51.20 Aligned_cols=33 Identities=27% Similarity=0.342 Sum_probs=24.7
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++.--+.+ .|.=+.|.|+||+||||++-.|..
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~~ 36 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELVQ 36 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHH
Confidence 344444444 588899999999999999876653
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=90.61 E-value=0.085 Score=51.31 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=26.6
Q ss_pred cccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 402 ILNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 402 ~l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++.-.+.+ .|.=+.|.|+||+||||+...|..
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~~ 37 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLIN 37 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHHT
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 456666666 788999999999999999976653
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=90.58 E-value=0.061 Score=55.13 Aligned_cols=25 Identities=20% Similarity=0.441 Sum_probs=23.0
Q ss_pred ecCCcEEEEEcCCCCcHHHHHHHHH
Q 040099 410 IPNGTIAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 410 i~~g~~~~ivG~sGsGKSTl~~ll~ 434 (1236)
+++|+++-|.|++|+||||++.-++
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 8999999999999999999987665
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.57 E-value=0.11 Score=49.97 Aligned_cols=21 Identities=29% Similarity=0.501 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999988764
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=90.57 E-value=0.031 Score=59.01 Aligned_cols=23 Identities=35% Similarity=0.650 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
++||.|+|||||||+.+.|...+
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~ 28 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIF 28 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHH
Confidence 79999999999999999887654
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.55 E-value=0.098 Score=50.55 Aligned_cols=28 Identities=32% Similarity=0.587 Sum_probs=22.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc-----ccCCCCc
Q 040099 1041 TIALVGESGSGKSTVISLLQR-----FYDPSSG 1068 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r-----~~~~~~G 1068 (1236)
|+.+||.+|+|||||++-+.. .|+|+.|
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~~~~~~~~~~t~~ 38 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQKIFVPDYDPTIE 38 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSSCCTTCCTTCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCCCCcccCccee
Confidence 689999999999999997753 3455544
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.53 E-value=0.06 Score=51.73 Aligned_cols=21 Identities=24% Similarity=0.414 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987753
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=90.47 E-value=0.062 Score=52.61 Aligned_cols=29 Identities=31% Similarity=0.471 Sum_probs=23.8
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEEC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~id 1073 (1236)
++.|+||.||||||+.+.|.--| |-+.|+
T Consensus 4 rIvl~G~pGSGKtT~a~~La~~~----g~~~i~ 32 (180)
T d1akya1 4 RMVLIGPPGAGKGTQAPNLQERF----HAAHLA 32 (180)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH----CCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHh----CCceEe
Confidence 57899999999999999998776 444554
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=90.47 E-value=0.045 Score=53.67 Aligned_cols=21 Identities=38% Similarity=0.626 Sum_probs=18.7
Q ss_pred CEEEEEcCCCCChHHHHHHHh
Q 040099 1040 KTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
=||.+||++|+|||||++-|.
T Consensus 18 ~KI~lvG~~~vGKTsLi~~l~ 38 (182)
T d1moza_ 18 LRILILGLDGAGKTTILYRLQ 38 (182)
T ss_dssp EEEEEEEETTSSHHHHHHHTC
T ss_pred EEEEEECCCCCCHHHHHHHHh
Confidence 468999999999999998774
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=90.39 E-value=0.058 Score=56.31 Aligned_cols=36 Identities=25% Similarity=0.338 Sum_probs=27.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeec
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEI 1077 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di 1077 (1236)
.-+-++||+|||||||++.|.+-+. .+-+.+++-++
T Consensus 33 ~~ilL~GpPGtGKT~la~~la~~~~--~~~~~i~~d~~ 68 (273)
T d1gvnb_ 33 TAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDNDTF 68 (273)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECTHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhh--cceEEEecHHH
Confidence 3488999999999999999999774 33556665333
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=90.39 E-value=0.062 Score=54.92 Aligned_cols=22 Identities=27% Similarity=0.496 Sum_probs=20.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
++||+|+..||||||++.|++.
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 4999999999999999999874
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.37 E-value=0.068 Score=52.54 Aligned_cols=21 Identities=29% Similarity=0.352 Sum_probs=18.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|++|+|||||++-+.+
T Consensus 7 Ki~ivG~~~vGKTsLi~~l~~ 27 (186)
T d2f7sa1 7 KLLALGDSGVGKTTFLYRYTD 27 (186)
T ss_dssp EEEEESCTTSSHHHHHHHHHC
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 389999999999999988764
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.36 E-value=0.061 Score=52.81 Aligned_cols=21 Identities=19% Similarity=0.395 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|++|||.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 799999999999999976653
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.31 E-value=0.064 Score=51.74 Aligned_cols=21 Identities=29% Similarity=0.642 Sum_probs=18.8
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||+|||.+|+|||||++-+..
T Consensus 6 Ki~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 6 KVCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999988753
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=90.31 E-value=0.057 Score=58.05 Aligned_cols=34 Identities=24% Similarity=0.504 Sum_probs=26.0
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
+.-+.++||||+|||+|++.|.+.+.. --+.+|+
T Consensus 49 ~~~iLl~GPpG~GKT~lAkalA~~~~~--~~~~i~~ 82 (309)
T d1ofha_ 49 PKNILMIGPTGVGKTEIARRLAKLANA--PFIKVEA 82 (309)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTC--CEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHhhcccc--chhcccc
Confidence 345689999999999999999998642 2455554
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=90.27 E-value=0.081 Score=51.13 Aligned_cols=29 Identities=31% Similarity=0.359 Sum_probs=22.8
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhc
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
++-.-.|.=|.|+|+||+||||++..|.+
T Consensus 9 ~~v~~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 9 VLVDVYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EEEEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 34445688899999999999999866543
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=90.23 E-value=0.069 Score=52.41 Aligned_cols=21 Identities=24% Similarity=0.488 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|.+|+|||||++-+.+
T Consensus 4 Kv~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 4 KVIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999987764
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.21 E-value=0.092 Score=50.51 Aligned_cols=21 Identities=19% Similarity=0.295 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|.+|+|||||++-+.+
T Consensus 5 KivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997653
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.21 E-value=0.12 Score=49.86 Aligned_cols=21 Identities=29% Similarity=0.397 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.+.++|.+|+|||||++-+.+
T Consensus 6 Ki~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 6 KLVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997764
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=90.13 E-value=1.1 Score=46.72 Aligned_cols=24 Identities=33% Similarity=0.319 Sum_probs=20.9
Q ss_pred CCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
...|+|+|..|.|||||++.+.+-
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~~~ 67 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQALSK 67 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 457999999999999999988654
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.12 E-value=0.074 Score=51.35 Aligned_cols=23 Identities=26% Similarity=0.413 Sum_probs=19.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++++|++|+|||||++.+.+..
T Consensus 3 Ki~lvG~~~vGKTsLi~~~~~~~ 25 (168)
T d2gjsa1 3 KVLLLGAPGVGKSALARIFGGVE 25 (168)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCcCHHHHHHHHhCCc
Confidence 47899999999999999988754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=90.08 E-value=0.067 Score=51.50 Aligned_cols=21 Identities=24% Similarity=0.552 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.|||.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987753
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=90.06 E-value=0.081 Score=54.97 Aligned_cols=30 Identities=23% Similarity=0.449 Sum_probs=25.0
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCCCCc
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDPQAG 442 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G 442 (1236)
...+.|.||+|+||||+++.++..+....+
T Consensus 43 ~~~lll~GppGtGKT~l~~~l~~~l~~~~~ 72 (276)
T d1fnna2 43 YPRATLLGRPGTGKTVTLRKLWELYKDKTT 72 (276)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHTTSCC
T ss_pred CCceEEECCCCCCHHHHHHHHHHHHhcccC
Confidence 357899999999999999999988754433
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=89.97 E-value=0.063 Score=56.22 Aligned_cols=50 Identities=24% Similarity=0.353 Sum_probs=34.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC--CCCCcEEEECCeecCCCCHHHHhcceEE
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY--DPQAGEVLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~--~~~~G~i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
.+||+|+.|||||||+..|+..- ....|++. +|..+.++..++..+++++
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~~~~g~v~-~g~~~~D~~~~E~~r~~ti 55 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAKERRGRVE-EGTTTTDYTPEAKLHRTTV 55 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSSSSCCCGG-GTCCSSCCSHHHHHTTSCC
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCchhhccch-hccccccchHHHHHhCCeE
Confidence 47999999999999999885322 22345543 4555667777766666543
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.066 Score=52.15 Aligned_cols=22 Identities=23% Similarity=0.576 Sum_probs=19.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhc
Q 040099 1040 KTIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
-||.|||.+|+|||||++-+..
T Consensus 3 ~KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 3 KKLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCcCHHHHHHHHHh
Confidence 3789999999999999977654
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.068 Score=51.93 Aligned_cols=21 Identities=29% Similarity=0.509 Sum_probs=18.6
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.|||.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 699999999999999987653
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.95 E-value=0.075 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.439 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||++|+|||||++-+.+
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (173)
T d2a5ja1 5 KYIIIGDTGVGKSCLLLQFTD 25 (173)
T ss_dssp EEEEESSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHhc
Confidence 478999999999999997764
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=89.93 E-value=0.068 Score=54.59 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.|.||+|+||||+++.++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 47899999999999999998765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.88 E-value=0.073 Score=55.42 Aligned_cols=25 Identities=24% Similarity=0.361 Sum_probs=21.8
Q ss_pred CCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 412 NGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 412 ~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+..+.|.||+|+|||||++-++..
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~ 52 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINE 52 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHH
Confidence 5678999999999999999887654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.82 E-value=0.1 Score=50.62 Aligned_cols=24 Identities=33% Similarity=0.540 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
++.++|.+|+|||||++.+.+...
T Consensus 5 Kv~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 5 RVVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhCcC
Confidence 478999999999999999886543
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=89.81 E-value=0.07 Score=54.54 Aligned_cols=22 Identities=18% Similarity=0.465 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||+|+..||||||++.|++-
T Consensus 7 ~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 7 IVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCccHHHHHHHHHhh
Confidence 3999999999999999999874
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.80 E-value=0.099 Score=50.24 Aligned_cols=21 Identities=24% Similarity=0.419 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||++|+|||||++-+.+
T Consensus 5 Ki~lvG~~~vGKTsLi~r~~~ 25 (167)
T d1kaoa_ 5 KVVVLGSGGVGKSALTVQFVT 25 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987765
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=89.79 E-value=0.067 Score=56.25 Aligned_cols=31 Identities=19% Similarity=0.249 Sum_probs=27.7
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+.|-+|++.+|+|++|+|||||+..|.+-..
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~~ 68 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSIA 68 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHHh
Confidence 5788999999999999999999999987543
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.77 E-value=0.074 Score=51.17 Aligned_cols=21 Identities=33% Similarity=0.480 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|++|+|||||++-+..
T Consensus 4 Ki~vvG~~~vGKTSli~~l~~ 24 (166)
T d1g16a_ 4 KILLIGDSGVGKSCLLVRFVE 24 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999997654
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.76 E-value=0.074 Score=51.22 Aligned_cols=20 Identities=25% Similarity=0.463 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||.|||.+|+|||||++-+.
T Consensus 5 KivlvG~~~vGKTsLi~r~~ 24 (167)
T d1z08a1 5 KVVLLGEGCVGKTSLVLRYC 24 (167)
T ss_dssp EEEEECCTTSCHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999999765
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=89.73 E-value=0.071 Score=54.72 Aligned_cols=23 Identities=30% Similarity=0.440 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
+.+.||+|+||||+++++++.+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.72 E-value=0.14 Score=49.93 Aligned_cols=21 Identities=29% Similarity=0.406 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++++|++|+|||||++-+.+
T Consensus 7 ki~vlG~~~vGKTsLi~~~~~ 27 (175)
T d2bmja1 7 RLGVLGDARSGKSSLIHRFLT 27 (175)
T ss_dssp EEEEECCTTTTHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999996654
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.056 Score=52.41 Aligned_cols=20 Identities=35% Similarity=0.660 Sum_probs=17.7
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
|+++||.+|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999987653
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.70 E-value=0.072 Score=51.71 Aligned_cols=20 Identities=25% Similarity=0.599 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||+++|..|+|||||++-+.
T Consensus 7 KI~lvG~~~vGKTsll~~~~ 26 (174)
T d2bmea1 7 KFLVIGNAGTGKSCLLHQFI 26 (174)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 48999999999999999775
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.67 E-value=0.12 Score=51.09 Aligned_cols=28 Identities=39% Similarity=0.614 Sum_probs=23.0
Q ss_pred EEEEEcCCCCChHHHHHHHh--cccCCCCc
Q 040099 1041 TIALVGESGSGKSTVISLLQ--RFYDPSSG 1068 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~--r~~~~~~G 1068 (1236)
|+.|+|.+|+|||||++-+. .-+.|+-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 78999999999999998872 22457888
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.56 E-value=0.054 Score=52.64 Aligned_cols=21 Identities=33% Similarity=0.643 Sum_probs=9.4
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.+||.+|+|||||++.|.+
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986653
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.55 E-value=0.082 Score=54.40 Aligned_cols=26 Identities=23% Similarity=0.206 Sum_probs=23.9
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
-|++|+.+-|.|++||||||+..-+.
T Consensus 33 Gip~G~~~~i~G~~GsGKT~lalq~~ 58 (258)
T d1v5wa_ 33 GIESMAITEAFGEFRTGKTQLSHTLC 58 (258)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHH
T ss_pred CCcCCEEEEEECCCCCCHHHHHHHHH
Confidence 59999999999999999999997765
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.51 E-value=0.083 Score=55.66 Aligned_cols=21 Identities=33% Similarity=0.347 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++||-|+.|||||||.+.|.-
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~ 49 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYN 49 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHH
Confidence 789999999999999987753
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=89.43 E-value=0.09 Score=53.37 Aligned_cols=30 Identities=30% Similarity=0.563 Sum_probs=24.4
Q ss_pred ccceeE-EecCCCEEEEEcCCCCChHHHHHH
Q 040099 1029 FRDLCL-TIPPGKTIALVGESGSGKSTVISL 1058 (1236)
Q Consensus 1029 L~~is~-~I~~Ge~vaIVG~SGSGKSTL~~l 1058 (1236)
|+++-- -+++|+.+-|.|++|+||||++.-
T Consensus 15 LD~~l~GGi~~G~~~~I~G~~G~GKT~la~~ 45 (242)
T d1tf7a1 15 FDDISHGGLPIGRSTLVSGTSGTGKTLFSIQ 45 (242)
T ss_dssp HHHHTTSSEETTSEEEEEESTTSSHHHHHHH
T ss_pred HHHhhcCCCcCCeEEEEEeCCCCCHHHHHHH
Confidence 444433 489999999999999999999843
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.42 E-value=0.1 Score=50.39 Aligned_cols=21 Identities=24% Similarity=0.539 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|++|+|||||++-+.+
T Consensus 7 Ki~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 7 KIVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999998765
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.42 E-value=0.077 Score=54.21 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=20.1
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+.|.||+|+||||+++.+++.+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999854
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=89.39 E-value=0.086 Score=52.65 Aligned_cols=23 Identities=26% Similarity=0.580 Sum_probs=20.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+++|-|.-||||||+++.|...+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58899999999999999998654
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=89.38 E-value=0.062 Score=60.61 Aligned_cols=45 Identities=22% Similarity=0.518 Sum_probs=31.0
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEEEECCeecccCChHHHhcceEEEcCCC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHITLDGVEIQKLQVKWLRQQMGVVSQEP 1096 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~di~~i~~~~lR~~i~~V~Qdp 1096 (1236)
-+-++||||||||-|++.|.++.+.- =+..|+...+ ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 48999999999999999999988532 3444543332 268888876
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.36 E-value=0.13 Score=50.25 Aligned_cols=21 Identities=29% Similarity=0.676 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 689999999999999976543
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=89.35 E-value=0.083 Score=55.00 Aligned_cols=26 Identities=19% Similarity=0.231 Sum_probs=22.4
Q ss_pred CCCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1038 PGKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1038 ~Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.+..+.|+||+|+|||||++-+++-.
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~~~ 53 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGINEL 53 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHHHC
Confidence 56789999999999999998876644
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.31 E-value=0.083 Score=51.45 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=18.9
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
||.+||..|+|||||++.+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999998764
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=89.27 E-value=0.085 Score=56.88 Aligned_cols=25 Identities=28% Similarity=0.466 Sum_probs=21.6
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.-+++|.||.|+|||||+.-|...+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 4579999999999999999887643
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=89.27 E-value=0.092 Score=50.30 Aligned_cols=21 Identities=19% Similarity=0.245 Sum_probs=18.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|.+|+|||||++-+..
T Consensus 4 Kv~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 4 KIIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999987753
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=89.25 E-value=0.089 Score=50.82 Aligned_cols=20 Identities=35% Similarity=0.589 Sum_probs=18.5
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||.+||.+|+|||||++-+.
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~ 27 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFV 27 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 68999999999999998876
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.98 E-value=0.091 Score=50.74 Aligned_cols=21 Identities=33% Similarity=0.673 Sum_probs=18.3
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
|++|||+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 599999999999999986643
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=88.94 E-value=0.15 Score=49.71 Aligned_cols=21 Identities=24% Similarity=0.507 Sum_probs=17.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++.++|.+|+|||||++-+..
T Consensus 4 KivliG~~~vGKTsli~r~~~ 24 (179)
T d1m7ba_ 4 KIVVVGDSQCGKTALLHVFAK 24 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999975543
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=88.92 E-value=0.092 Score=54.03 Aligned_cols=25 Identities=32% Similarity=0.438 Sum_probs=22.6
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHH
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLL 1059 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL 1059 (1236)
-+++|+.+-|.|++||||||+..-+
T Consensus 32 Glp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 32 GIETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHH
T ss_pred CccCCEEEEEEcCCCCCHHHHHHHH
Confidence 5899999999999999999998644
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=88.88 E-value=0.094 Score=53.59 Aligned_cols=26 Identities=19% Similarity=0.303 Sum_probs=23.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHh
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
-+++|+.+-|.|++|+||||++.-+.
T Consensus 30 Gl~~G~l~~i~G~~G~GKT~~~l~~a 55 (258)
T d2i1qa2 30 GLESQSVTEFAGVFGSGKTQIMHQSC 55 (258)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHH
T ss_pred CccCCeEEEEEeCCCCCHHHHHHHHH
Confidence 39999999999999999999986664
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.79 E-value=0.13 Score=49.35 Aligned_cols=21 Identities=24% Similarity=0.434 Sum_probs=18.4
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|.+|+|||||++-+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 6 KYIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999987664
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=88.57 E-value=0.12 Score=55.66 Aligned_cols=25 Identities=32% Similarity=0.506 Sum_probs=21.7
Q ss_pred CCEEEEEcCCCCChHHHHHHHhccc
Q 040099 1039 GKTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1039 Ge~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.-++||.|+-|+|||||+..|.+.+
T Consensus 51 ~~~igitG~pGaGKSTli~~l~~~~ 75 (323)
T d2qm8a1 51 AIRVGITGVPGVGKSTTIDALGSLL 75 (323)
T ss_dssp SEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ceEEeeeCCCCCCHHHHHHHHHHHH
Confidence 3579999999999999999888654
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=88.54 E-value=0.068 Score=52.30 Aligned_cols=21 Identities=29% Similarity=0.515 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++++|++|+|||||++-+.+
T Consensus 19 KI~lvG~~~vGKTsLi~~l~~ 39 (182)
T d1moza_ 19 RILILGLDGAGKTTILYRLQI 39 (182)
T ss_dssp EEEEEEETTSSHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 588999999999999998743
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.53 E-value=0.14 Score=49.29 Aligned_cols=21 Identities=33% Similarity=0.532 Sum_probs=18.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|+.|+|||||++-+.+
T Consensus 8 Ki~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 8 KVMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986543
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.51 E-value=0.11 Score=50.89 Aligned_cols=21 Identities=19% Similarity=0.332 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|.+|+|||||++-+..
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 689999999999999976653
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.50 E-value=0.1 Score=50.75 Aligned_cols=21 Identities=19% Similarity=0.415 Sum_probs=18.6
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++.++|++|+|||||++-+.+
T Consensus 4 KivvvG~~~vGKTsLi~~~~~ 24 (177)
T d1kmqa_ 4 KLVIVGDGACGKTCLLIVNSK 24 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 588999999999999987764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=88.37 E-value=0.12 Score=49.29 Aligned_cols=31 Identities=19% Similarity=0.213 Sum_probs=27.2
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCC
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDP 1065 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~ 1065 (1236)
..+||..|.+.|+=||||||+++.+.+-+-.
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~lg~ 59 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGIGH 59 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhccc
Confidence 4578999999999999999999999887754
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.36 E-value=0.11 Score=50.43 Aligned_cols=20 Identities=25% Similarity=0.526 Sum_probs=18.1
Q ss_pred EEEEcCCCCcHHHHHHHHHc
Q 040099 416 AALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++|..|+|||||++-+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 89999999999999997753
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=88.32 E-value=0.095 Score=54.68 Aligned_cols=42 Identities=24% Similarity=0.332 Sum_probs=32.3
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCc-EEEECCee
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAG-EVLIDGVN 450 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G-~i~~~g~~ 450 (1236)
=+++|.++-|.||+|||||||+-.++....-..| -+++|...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 5789999999999999999998777665543344 46777653
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.28 E-value=0.11 Score=50.36 Aligned_cols=21 Identities=29% Similarity=0.390 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++|+|.+|+|||||++-+..
T Consensus 8 Kv~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 8 KLVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEEECTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 589999999999999987654
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=88.28 E-value=0.15 Score=49.95 Aligned_cols=30 Identities=27% Similarity=0.536 Sum_probs=25.4
Q ss_pred EEEEEcCCCCChHHHHHHHhcccCCCCcEE
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYDPSSGHI 1070 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I 1070 (1236)
|+.++|..|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 689999999999999988877667777743
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.23 E-value=0.12 Score=50.33 Aligned_cols=21 Identities=29% Similarity=0.487 Sum_probs=18.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|..|+|||||++-+.+
T Consensus 9 Ki~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 9 KILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 488999999999999998765
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=88.14 E-value=0.15 Score=52.89 Aligned_cols=28 Identities=25% Similarity=0.536 Sum_probs=24.2
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSS 1067 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~ 1067 (1236)
..+.|.||+|+||||+++.|.+.+....
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~~~ 71 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKDKT 71 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTTSC
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhccc
Confidence 5789999999999999999998886443
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.13 E-value=0.11 Score=49.87 Aligned_cols=20 Identities=25% Similarity=0.519 Sum_probs=18.2
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||.+||.+|+|||||++-+.
T Consensus 5 KivvvG~~~vGKTsli~r~~ 24 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFV 24 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 68999999999999998764
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=88.08 E-value=0.11 Score=50.87 Aligned_cols=20 Identities=20% Similarity=0.421 Sum_probs=18.1
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||.|||.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 59999999999999997765
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=88.06 E-value=0.1 Score=53.88 Aligned_cols=24 Identities=25% Similarity=0.243 Sum_probs=20.8
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
..+.+.||+|||||++++.|+...
T Consensus 41 ~~vLL~GppGtGKT~la~alA~~~ 64 (246)
T d1d2na_ 41 VSVLLEGPPHSGKTALAAKIAEES 64 (246)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECcCCCCHHHHHHHHhhcc
Confidence 357899999999999999998743
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.02 E-value=0.12 Score=53.19 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.+-|.||+|+||||++++|.+-+.
T Consensus 54 ~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 54 AAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 468999999999999999998764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=87.97 E-value=0.093 Score=50.84 Aligned_cols=21 Identities=29% Similarity=0.510 Sum_probs=19.0
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
+|.++|++|+|||||++-+..
T Consensus 14 kIvlvG~~~vGKTSli~rl~~ 34 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKL 34 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 699999999999999998764
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=87.95 E-value=0.11 Score=53.00 Aligned_cols=33 Identities=21% Similarity=0.342 Sum_probs=26.1
Q ss_pred EEEEcCCCCChHHHHHHHhcccCCCCcEEEECCee
Q 040099 1042 IALVGESGSGKSTVISLLQRFYDPSSGHITLDGVE 1076 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG~d 1076 (1236)
+-+.||+|+||||++++|..-+....+ .++|.+
T Consensus 38 ~L~~GPpGtGKT~lA~~la~~~~~~~~--~~~~~~ 70 (238)
T d1in4a2 38 VLLAGPPGLGKTTLAHIIASELQTNIH--VTSGPV 70 (238)
T ss_dssp EEEESSTTSSHHHHHHHHHHHHTCCEE--EEETTT
T ss_pred EEEECCCCCcHHHHHHHHHhccCCCcc--cccCcc
Confidence 789999999999999999988876533 344433
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=87.94 E-value=0.13 Score=50.94 Aligned_cols=22 Identities=23% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEcCCCCcHHHHHHHHHcCC
Q 040099 416 AALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 416 ~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
+||+|...+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999998854
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=87.94 E-value=0.11 Score=54.34 Aligned_cols=49 Identities=12% Similarity=0.220 Sum_probs=22.4
Q ss_pred EEEEEcCCCCChHHHHHHHh---cccCCCCcEEEECCeecccCChHHHhcceEE
Q 040099 1041 TIALVGESGSGKSTVISLLQ---RFYDPSSGHITLDGVEIQKLQVKWLRQQMGV 1091 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~---r~~~~~~G~I~idG~di~~i~~~~lR~~i~~ 1091 (1236)
.|||+|+.|||||||+..|+ |..+ ..|++. +|..+.+..+++..+.+++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~si 59 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGITI 59 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCcc
Confidence 48999999999999998885 3332 235543 4444555556665555554
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.92 E-value=0.16 Score=48.90 Aligned_cols=21 Identities=29% Similarity=0.431 Sum_probs=18.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||.+|+|||||++-+..
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 8 KLVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 578999999999999987763
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.87 E-value=0.16 Score=50.01 Aligned_cols=28 Identities=36% Similarity=0.470 Sum_probs=23.4
Q ss_pred EEEEEcCCCCcHHHHHHHH--HcCCCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLI--QRFYDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll--~~~~~~~~G 442 (1236)
++.++|.+|+|||||++-+ .-.+.||-|
T Consensus 4 KivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 4 KILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 5789999999999999877 334568888
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.79 E-value=0.12 Score=51.46 Aligned_cols=24 Identities=33% Similarity=0.552 Sum_probs=20.9
Q ss_pred EEEEEcCCCCChHHHHHHHhcccC
Q 040099 1041 TIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
.|+|-|.-||||||+++.|...+.
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l~ 25 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 488999999999999999986553
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.75 E-value=0.13 Score=53.54 Aligned_cols=30 Identities=30% Similarity=0.393 Sum_probs=26.3
Q ss_pred eEEecCCCEEEEEcCCCCChHHHHHHHhcc
Q 040099 1033 CLTIPPGKTIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1033 s~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
=+.+-+||+++|+|++|+|||||+.-+.+-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 358899999999999999999998777654
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=87.71 E-value=0.085 Score=51.14 Aligned_cols=21 Identities=33% Similarity=0.487 Sum_probs=9.1
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
+++++|.+|+|||||++.+++
T Consensus 8 Ki~vvG~~~vGKTsLi~~l~~ 28 (173)
T d2fu5c1 8 KLLLIGDSGVGKTCVLFRFSE 28 (173)
T ss_dssp EEEEECCCCC-----------
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 489999999999999986553
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=87.53 E-value=0.15 Score=53.25 Aligned_cols=51 Identities=24% Similarity=0.375 Sum_probs=37.8
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE-EEECCeecccCChHHHhc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH-ITLDGVEIQKLQVKWLRQ 1087 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~-I~idG~di~~i~~~~lR~ 1087 (1236)
-++.|..+-|.|++||||||++..+........|. |+||... .++++.+++
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~~ 107 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAKK 107 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHHH
Confidence 78999999999999999999987777665545555 6677543 345555543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=87.37 E-value=0.12 Score=55.01 Aligned_cols=23 Identities=35% Similarity=0.429 Sum_probs=21.2
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.+++||...||||||+++|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.34 E-value=0.089 Score=50.89 Aligned_cols=20 Identities=35% Similarity=0.508 Sum_probs=17.6
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~ 434 (1236)
+++++|++|+|||||++-+.
T Consensus 5 Ki~vvG~~~vGKTsli~~~~ 24 (170)
T d1i2ma_ 5 KLVLVGDGGTGKTTFVKRHL 24 (170)
T ss_dssp EEEEEECTTSSHHHHHHTTC
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999998654
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=87.34 E-value=0.13 Score=55.41 Aligned_cols=22 Identities=36% Similarity=0.463 Sum_probs=20.1
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
+|||||..-+|||||+++|.|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999874
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.26 E-value=0.13 Score=52.13 Aligned_cols=44 Identities=16% Similarity=0.281 Sum_probs=29.4
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchhH
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSLI 585 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~ 585 (1236)
+.+++++||.-. +.......+...+.........+++++..+.+
T Consensus 101 ~~kviiiDe~d~-~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~i 144 (224)
T d1sxjb2 101 KHKIVILDEADS-MTAGAQQALRRTMELYSNSTRFAFACNQSNKI 144 (224)
T ss_dssp CCEEEEEESGGG-SCHHHHHTTHHHHHHTTTTEEEEEEESCGGGS
T ss_pred ceEEEEEecccc-cchhHHHHHhhhccccccceeeeeccCchhhh
Confidence 467999999764 44445556666666655556677788877543
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=87.23 E-value=0.12 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.502 Sum_probs=20.2
Q ss_pred EEEEcCCCCChHHHHHHHhccc
Q 040099 1042 IALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
+-+.||+|+||||+++++.+-+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999999864
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=87.22 E-value=0.13 Score=52.63 Aligned_cols=22 Identities=32% Similarity=0.425 Sum_probs=19.9
Q ss_pred cEEEEEcCCCCcHHHHHHHHHc
Q 040099 414 TIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
.++||.|+-||||||+.+.|..
T Consensus 2 ~iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 2 KLIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999954
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.20 E-value=0.12 Score=54.24 Aligned_cols=24 Identities=29% Similarity=0.321 Sum_probs=21.6
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
-.|+|+|+.++|||||++.|++-.
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999854
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.15 E-value=0.16 Score=51.53 Aligned_cols=28 Identities=29% Similarity=0.345 Sum_probs=23.7
Q ss_pred EEEEEcCCCCcHHHHHHHH-HcCCCCCCc
Q 040099 415 IAALVGTSGSGKSTVISLI-QRFYDPQAG 442 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll-~~~~~~~~G 442 (1236)
++.++|.+|+|||||++-+ .+-+.|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 6899999999999999765 566778877
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=87.13 E-value=0.2 Score=50.69 Aligned_cols=39 Identities=28% Similarity=0.417 Sum_probs=27.5
Q ss_pred CEEEEEcCCCCChHHHHHHH-hcccCCCCcE----EEECCeecc
Q 040099 1040 KTIALVGESGSGKSTVISLL-QRFYDPSSGH----ITLDGVEIQ 1078 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL-~r~~~~~~G~----I~idG~di~ 1078 (1236)
-||.++|.+|+|||||++-+ .+-+.|+-|- +.++++.+.
T Consensus 7 ~KilllG~~~vGKTsll~~~~~~~~~pTiG~~~~~~~~~~~~~~ 50 (221)
T d1azta2 7 HRLLLLGAGESGKSTIVKQMRILHVVLTSGIFETKFQVDKVNFH 50 (221)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHCCCCCSCEEEEEEETTEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCcCCCCCeEEEEEEECcEEEE
Confidence 37899999999999999866 3344577662 345665443
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=86.97 E-value=0.087 Score=51.04 Aligned_cols=23 Identities=17% Similarity=0.270 Sum_probs=19.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.++|++|+|||||++-+.+-.
T Consensus 14 kIvlvG~~~vGKTSli~rl~~~~ 36 (173)
T d1e0sa_ 14 RILMLGLDAAGKTTILYKLKLGQ 36 (173)
T ss_dssp EEEEEEETTSSHHHHHHHTTCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 58899999999999999886543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=86.97 E-value=0.14 Score=54.73 Aligned_cols=53 Identities=19% Similarity=0.181 Sum_probs=34.0
Q ss_pred hHHHHHHHHHHHccCCC--EEEEecCCCCCCHHHHHHHHHHHHHHcCCCeEEEEec
Q 040099 1138 GQKQRVAIARAIVKEPK--ILLLDEATSALDIESERVVQDALDQVMVDRTTLVVAH 1191 (1236)
Q Consensus 1138 GQrQRlaLARALlr~p~--ILlLDEaTSaLD~~te~~I~~~L~~~~~~~TvI~IaH 1191 (1236)
.+.+-..+++..+++|. ||....++..........+.+.++. ...+|++++++
T Consensus 153 ~~~~~~~~~~~yi~~~~~~il~v~~~~~~~~~~~~~~~~~~~~~-~~~r~i~Vitk 207 (306)
T d1jwyb_ 153 IEQQIRRMVMAYIKKQNAIIVAVTPANTDLANSDALQLAKEVDP-EGKRTIGVITK 207 (306)
T ss_dssp SHHHHHHHHHHHHHSTTEEEEEEEESSSCSTTCSHHHHHHHHCS-SCSSEEEEEEC
T ss_pred HHHHHHHHHHHHHhCCCceeEEeecccccccccHHHHHHHHhCc-CCCeEEEEEec
Confidence 34456678888888886 6666777766666555555444432 23478888776
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.94 E-value=0.14 Score=50.52 Aligned_cols=20 Identities=20% Similarity=0.418 Sum_probs=17.8
Q ss_pred EEEEEcCCCCChHHHHHHHh
Q 040099 1041 TIALVGESGSGKSTVISLLQ 1060 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~ 1060 (1236)
||+++|.+|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 69999999999999997654
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=86.83 E-value=0.14 Score=52.48 Aligned_cols=21 Identities=33% Similarity=0.406 Sum_probs=19.2
Q ss_pred EEEEEcCCCCChHHHHHHHhc
Q 040099 1041 TIALVGESGSGKSTVISLLQR 1061 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r 1061 (1236)
.|||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 699999999999999999954
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=86.82 E-value=0.14 Score=50.04 Aligned_cols=30 Identities=30% Similarity=0.443 Sum_probs=25.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEE
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEV 444 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i 444 (1236)
++.++|..|+|||||++-+....-|+.|-.
T Consensus 4 KivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 4 KLLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 579999999999999998877667887743
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=86.61 E-value=0.13 Score=57.81 Aligned_cols=45 Identities=16% Similarity=0.428 Sum_probs=31.8
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCeecCCCCHHHHhcceEEEccCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLIDGVNLKEFQLKWIREKIGLVSQEP 470 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~~v~Q~~ 470 (1236)
-+.++||||||||-|++.|+++.+.- -+.+|+..+. ..|||..|.
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~VP--Fv~~daT~fT---------eaGYvG~DV 95 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANAP--FIKVEATKFT---------EVGYVGKEV 95 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTCC--EEEEEGGGGC-------------CCCCT
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCCC--EEEeecceee---------ecceeecch
Confidence 57899999999999999999987522 4556655443 489998886
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.40 E-value=0.17 Score=48.46 Aligned_cols=21 Identities=24% Similarity=0.425 Sum_probs=18.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++++||.+|+|||||++-+..
T Consensus 5 KivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 5 KLVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHc
Confidence 479999999999999987653
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.35 E-value=0.14 Score=53.79 Aligned_cols=24 Identities=25% Similarity=0.350 Sum_probs=21.6
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
-+|+|+||.++|||||+|.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 489999999999999999998743
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=86.24 E-value=0.23 Score=47.79 Aligned_cols=32 Identities=28% Similarity=0.337 Sum_probs=23.5
Q ss_pred ccceeEEecCCcEEEEEcCCCCcHHHHHHHHHc
Q 040099 403 LNGFCLLIPNGTIAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 403 l~~i~~~i~~g~~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
++..-+. -.|.=+.|.|+||+||||+.-.|..
T Consensus 6 ~H~~~v~-~~g~gvli~G~sg~GKS~la~~l~~ 37 (169)
T d1ko7a2 6 LHGVLVD-VYGVGVLITGDSGIGKSETALELIK 37 (169)
T ss_dssp EESEEEE-ETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEEEE-ECCEEEEEEeCCCCCHHHHHHHHHH
Confidence 4443333 4588999999999999999855543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=86.16 E-value=0.25 Score=51.80 Aligned_cols=35 Identities=26% Similarity=0.471 Sum_probs=28.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcc-----------cCCCCcEEEECC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRF-----------YDPSSGHITLDG 1074 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~-----------~~~~~G~I~idG 1074 (1236)
=++||||-.-+|||||++.|.+- .+|.-|.|.+.+
T Consensus 3 ~~~GivG~Pn~GKSTlf~~lt~~~~~~~~ypf~ti~pn~gvv~v~d 48 (278)
T d1jala1 3 FKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred ceEEEECCCCCCHHHHHHHHHCCCCccccCCCCCCCCceEEEeccc
Confidence 37999999999999999999943 256678876543
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=86.15 E-value=0.18 Score=52.38 Aligned_cols=23 Identities=22% Similarity=0.290 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
-+-+.||+|||||++++.+++..
T Consensus 40 giLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 40 GILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHT
T ss_pred eeEEecCCCCCchHHHHHHHHHh
Confidence 37899999999999999999864
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=86.13 E-value=0.17 Score=49.47 Aligned_cols=20 Identities=20% Similarity=0.355 Sum_probs=17.8
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~ 434 (1236)
+++|+|.+|+|||||++-+.
T Consensus 11 Ki~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 11 KCVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEEECTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHh
Confidence 48999999999999997765
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=86.01 E-value=0.16 Score=55.44 Aligned_cols=30 Identities=23% Similarity=0.313 Sum_probs=26.8
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
.++++..+.+.||+|+||||+.+.|+++..
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 447788999999999999999999999874
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=85.95 E-value=0.16 Score=52.94 Aligned_cols=54 Identities=24% Similarity=0.425 Sum_probs=38.9
Q ss_pred EecCCcEEEEEcCCCCcHHHHHHHHHcCCCCCCcE-EEECCeecCCCCHHHHhcceEE
Q 040099 409 LIPNGTIAALVGTSGSGKSTVISLIQRFYDPQAGE-VLIDGVNLKEFQLKWIREKIGL 465 (1236)
Q Consensus 409 ~i~~g~~~~ivG~sGsGKSTl~~ll~~~~~~~~G~-i~~~g~~~~~~~~~~~r~~i~~ 465 (1236)
-++.|.++-|.||+|||||||+-.++.......|. |+||... .+++++++ ++|+
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~~~q~~g~~~vyIDtE~--~~~~e~a~-~~Gv 110 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEH--ALDPDYAK-KLGV 110 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHHHHHHTTCEEEEEESSC--CCCHHHHH-HHTC
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHHHHhcCCCEEEEEECCc--cCCHHHHH-HhCC
Confidence 57899999999999999999987777766666665 5666543 24455443 3453
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=85.89 E-value=0.16 Score=54.02 Aligned_cols=35 Identities=23% Similarity=0.411 Sum_probs=27.8
Q ss_pred CEEEEEcCCCCChHHHHHHHhccc------------CCCCcEEEECC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFY------------DPSSGHITLDG 1074 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~------------~~~~G~I~idG 1074 (1236)
=++||||...+|||||++.|.+-- +|.-|.+.+.+
T Consensus 11 ~kiGivG~Pn~GKSTlfnalT~~~~~~~anypftTi~pn~g~v~v~d 57 (296)
T d1ni3a1 11 LKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPD 57 (296)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECC
T ss_pred cEEEEECCCCCCHHHHHHHHHCCCCCCcCCCCccCccCCeEEEeccc
Confidence 469999999999999999998742 45667776543
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=85.87 E-value=0.17 Score=51.27 Aligned_cols=43 Identities=16% Similarity=0.321 Sum_probs=30.3
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
+.+++++||.= .+.......+...|.+..+..-++++++....
T Consensus 99 ~~kiiiiDe~d-~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 99 GFKLIILDEAD-AMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp SCEEEEETTGG-GSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred CeEEEEEeccc-cchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 34699999975 56777777888888776555455667766554
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=85.81 E-value=0.16 Score=51.89 Aligned_cols=23 Identities=26% Similarity=0.472 Sum_probs=20.7
Q ss_pred EEEEcCCCCChHHHHHHHhcccC
Q 040099 1042 IALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1042 vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+-+.||+|+||||+++++.+-+.
T Consensus 38 ~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 38 LLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHHHhC
Confidence 56999999999999999998664
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=85.68 E-value=0.19 Score=49.66 Aligned_cols=23 Identities=30% Similarity=0.554 Sum_probs=20.6
Q ss_pred EEEEEcCCCCChHHHHHHHhccc
Q 040099 1041 TIALVGESGSGKSTVISLLQRFY 1063 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~~ 1063 (1236)
.|||+|.-.+|||||++.|.+..
T Consensus 7 nIaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 7 NIGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEEeccCCcHHHHHHHHHhhh
Confidence 38999999999999999998754
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=85.64 E-value=0.19 Score=52.35 Aligned_cols=29 Identities=24% Similarity=0.315 Sum_probs=26.0
Q ss_pred EEecCCcEEEEEcCCCCcHHHHHHHHHcC
Q 040099 408 LLIPNGTIAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 408 ~~i~~g~~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
+.+-+|++.+|.|++|+|||||+.-+..-
T Consensus 63 ~pigkGQr~~If~~~g~GKt~l~~~i~~~ 91 (276)
T d2jdid3 63 APYAKGGKIGLFGGAGVGKTVLIMELINN 91 (276)
T ss_dssp SCEETTCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccccCCCEEEeeCCCCCCHHHHHHHHHHH
Confidence 68899999999999999999998777654
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.62 E-value=0.18 Score=50.37 Aligned_cols=21 Identities=19% Similarity=0.330 Sum_probs=18.9
Q ss_pred EEEEEcCCCCcHHHHHHHHHc
Q 040099 415 IAALVGTSGSGKSTVISLIQR 435 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~ 435 (1236)
-+||+|+.++|||||++.|+.
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~ 25 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTY 25 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHH
Confidence 479999999999999999864
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=85.54 E-value=0.18 Score=52.54 Aligned_cols=42 Identities=19% Similarity=0.296 Sum_probs=32.4
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCc-EEEECCee
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSG-HITLDGVE 1076 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G-~I~idG~d 1076 (1236)
-+++|..+-|.|++|||||||...+..-..-..| -++||...
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~~q~~g~~~vyidtE~ 92 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEH 92 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSC
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHHHHcCCCEEEEEcccc
Confidence 7899999999999999999998777665543334 46777543
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=85.21 E-value=0.083 Score=53.00 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.5
Q ss_pred EEEEEcCCCCChHHHHHHHhcc
Q 040099 1041 TIALVGESGSGKSTVISLLQRF 1062 (1236)
Q Consensus 1041 ~vaIVG~SGSGKSTL~~lL~r~ 1062 (1236)
.|||+|+.+||||||+..|+..
T Consensus 5 ni~iiGhvd~GKSTL~~~Ll~~ 26 (204)
T d2c78a3 5 NVGTIGHVDHGKTTLTAALTYV 26 (204)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCcHHHHHHHHHHH
Confidence 4899999999999999998643
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.68 E-value=0.21 Score=49.01 Aligned_cols=20 Identities=20% Similarity=0.351 Sum_probs=17.5
Q ss_pred EEEEEcCCCCcHHHHHHHHH
Q 040099 415 IAALVGTSGSGKSTVISLIQ 434 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~ 434 (1236)
+++++|++|+|||||++-+.
T Consensus 5 KvvllG~~~vGKTSli~r~~ 24 (191)
T d2ngra_ 5 KCVVVGDGAVGKTCLLISYT 24 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHH
Confidence 58999999999999997654
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=84.68 E-value=0.2 Score=53.06 Aligned_cols=23 Identities=30% Similarity=0.313 Sum_probs=21.2
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+++||...||||||+|.|+|.-
T Consensus 28 ~ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 28 QIAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSC
T ss_pred eEEEEcCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999964
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=84.66 E-value=0.21 Score=51.00 Aligned_cols=25 Identities=28% Similarity=0.470 Sum_probs=22.1
Q ss_pred cEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 414 TIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 414 ~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
++++|=|+-||||||++++|...+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999987653
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=84.42 E-value=0.22 Score=52.96 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+++||.-.||||||++.|+|.-
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~ 48 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRD 48 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCC
Confidence 48999999999999999999965
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=84.42 E-value=0.14 Score=53.54 Aligned_cols=41 Identities=12% Similarity=0.159 Sum_probs=30.6
Q ss_pred cccceeEEecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcE
Q 040099 1028 VFRDLCLTIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGH 1069 (1236)
Q Consensus 1028 vL~~is~~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~ 1069 (1236)
+++. =+.|-+||+++|+|++|+|||+|+..+..-..-....
T Consensus 57 ~ID~-l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v 97 (276)
T d1fx0a3 57 AIDA-MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVI 97 (276)
T ss_dssp TTTT-TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCE
T ss_pred EEec-cccccCCceEeeccCCCCChHHHHHHHHhhhcccCce
Confidence 4433 3588999999999999999999997665554444444
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=83.81 E-value=0.16 Score=46.65 Aligned_cols=21 Identities=29% Similarity=0.371 Sum_probs=18.4
Q ss_pred ecCCCEEEEEcCCCCChHHHH
Q 040099 1036 IPPGKTIALVGESGSGKSTVI 1056 (1236)
Q Consensus 1036 I~~Ge~vaIVG~SGSGKSTL~ 1056 (1236)
+++|+.+-|++|+|||||..+
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999655
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=83.69 E-value=0.28 Score=48.84 Aligned_cols=24 Identities=25% Similarity=0.461 Sum_probs=21.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
.+||+|+..+|||||++.|++...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 589999999999999999987553
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=83.50 E-value=0.18 Score=52.42 Aligned_cols=23 Identities=26% Similarity=0.388 Sum_probs=19.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCC
Q 040099 415 IAALVGTSGSGKSTVISLIQRFY 437 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~ 437 (1236)
.+.+.||+|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 35667999999999999998765
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.45 E-value=0.27 Score=52.59 Aligned_cols=26 Identities=19% Similarity=0.272 Sum_probs=22.5
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYD 438 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~ 438 (1236)
...+.++||+|+|||.|++.|+..+.
T Consensus 52 ~~~~lf~Gp~GvGKT~lak~la~~l~ 77 (315)
T d1r6bx3 52 VGSFLFAGPTGVGKTEVTVQLSKALG 77 (315)
T ss_dssp SEEEEEECSTTSSHHHHHHHHHHHHT
T ss_pred ceEEEEECCCcchhHHHHHHHHhhcc
Confidence 33578999999999999999998763
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=83.29 E-value=0.24 Score=53.06 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=26.0
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccCCCCcEEEECC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYDPSSGHITLDG 1074 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I~idG 1074 (1236)
..+.++||||+|||.|++.|.+.+.. --|.+|-
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~~--~~i~~d~ 85 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALGI--ELLRFDM 85 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTC--EEEEEEG
T ss_pred eEEEEECCCcchhHHHHHHHHhhccC--CeeEecc
Confidence 34789999999999999999998742 2455553
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=83.19 E-value=1.4 Score=43.18 Aligned_cols=43 Identities=9% Similarity=0.203 Sum_probs=33.2
Q ss_pred CCCEEEEeCcCCCCCHHHHHHHHHHHHHHccCceEEEEecCchh
Q 040099 541 DPRILLLDEATSALDSESGRMVQEALDRVMINRTTVIVSHRLSL 584 (1236)
Q Consensus 541 ~p~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~ 584 (1236)
+.+|+|+||+= .|.......+.+.|.+-.++...|++|++.+.
T Consensus 79 ~~KviIId~ad-~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 79 TRKYVIVHDCE-RMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SSEEEEETTGG-GBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CCEEEEEeCcc-ccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 46899999964 46777788888888876556677889998764
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=82.78 E-value=0.26 Score=50.17 Aligned_cols=25 Identities=32% Similarity=0.612 Sum_probs=22.1
Q ss_pred CEEEEEcCCCCChHHHHHHHhcccC
Q 040099 1040 KTIALVGESGSGKSTVISLLQRFYD 1064 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~lL~r~~~ 1064 (1236)
+.|+|=|.-||||||++++|..-+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4689999999999999999987664
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=82.78 E-value=0.28 Score=52.55 Aligned_cols=22 Identities=32% Similarity=0.341 Sum_probs=20.0
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+||||.+-+|||||+|.|+|-
T Consensus 2 ~v~lvG~pn~GKStlfn~lt~~ 23 (319)
T d1wxqa1 2 EIGVVGKPNVGKSTFFSAATLV 23 (319)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred cEeEECCCCCCHHHHHHHHHCC
Confidence 4899999999999999999885
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=82.70 E-value=0.27 Score=51.31 Aligned_cols=48 Identities=21% Similarity=0.214 Sum_probs=21.7
Q ss_pred EEEEEcCCCCcHHHHHHHHH---cCCCCCCcEEEECCeecCCCCHHHHhcceE
Q 040099 415 IAALVGTSGSGKSTVISLIQ---RFYDPQAGEVLIDGVNLKEFQLKWIREKIG 464 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~---~~~~~~~G~i~~~g~~~~~~~~~~~r~~i~ 464 (1236)
.+||+|+.|||||||+..|+ |..+ ..|++. +|..+.+..+.+..++++
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~-~~g~v~-~~~~~~D~~~~E~~r~~s 58 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIH-KIGEVH-EGAATMDFMEQERERGIT 58 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSC-C--------------------CCCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCccc-ccccee-cCceEEeccHHHHhcCCc
Confidence 57999999999999998884 4333 234442 333344455555444443
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=82.59 E-value=0.28 Score=52.01 Aligned_cols=22 Identities=32% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+||||.+-||||||++.|++-
T Consensus 12 kiGivG~Pn~GKSTlfnalT~~ 33 (296)
T d1ni3a1 12 KTGIVGMPNVGKSTFFRAITKS 33 (296)
T ss_dssp EEEEEECSSSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5999999999999999999975
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=82.27 E-value=0.25 Score=55.25 Aligned_cols=34 Identities=21% Similarity=0.341 Sum_probs=24.3
Q ss_pred CEEEEEcCCCCChHHHHH-HHhcccCCCCcEEEEC
Q 040099 1040 KTIALVGESGSGKSTVIS-LLQRFYDPSSGHITLD 1073 (1236)
Q Consensus 1040 e~vaIVG~SGSGKSTL~~-lL~r~~~~~~G~I~id 1073 (1236)
..+.|+|+||||||++++ ++...+....+-|.+|
T Consensus 51 ~H~~I~G~tGsGKT~~l~~li~~~~~~g~~~iiiD 85 (433)
T d1e9ra_ 51 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVD 85 (433)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred ceEEEEeCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 458999999999999985 4555554444455555
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=81.55 E-value=0.56 Score=49.02 Aligned_cols=22 Identities=27% Similarity=0.462 Sum_probs=20.3
Q ss_pred EEEEEcCCCCcHHHHHHHHHcC
Q 040099 415 IAALVGTSGSGKSTVISLIQRF 436 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~ 436 (1236)
.+||||-+-+|||||++.|++-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~ 25 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKA 25 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHCC
Confidence 6899999999999999999953
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=81.49 E-value=0.19 Score=54.30 Aligned_cols=27 Identities=22% Similarity=0.302 Sum_probs=24.2
Q ss_pred CcEEEEEcCCCCcHHHHHHHHHcCCCC
Q 040099 413 GTIAALVGTSGSGKSTVISLIQRFYDP 439 (1236)
Q Consensus 413 g~~~~ivG~sGsGKSTl~~ll~~~~~~ 439 (1236)
|.-+.|+||.|+|||||++.+.++++|
T Consensus 28 ~h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 28 IGGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp GCCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CCeEEEECCCCccHHHHHHHHHHhCCC
Confidence 346899999999999999999999876
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=81.46 E-value=0.33 Score=52.92 Aligned_cols=41 Identities=22% Similarity=0.276 Sum_probs=32.8
Q ss_pred EecCCCEEEEEcCCCCChHHHHHHHhcccCCCCcEE-EECCeecc
Q 040099 1035 TIPPGKTIALVGESGSGKSTVISLLQRFYDPSSGHI-TLDGVEIQ 1078 (1236)
Q Consensus 1035 ~I~~Ge~vaIVG~SGSGKSTL~~lL~r~~~~~~G~I-~idG~di~ 1078 (1236)
.++++..+.++||.|+||||+.+.|.++.. |.+ .+++-|.+
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~---~~~i~in~s~~r 191 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG---GKALNVNLPLDR 191 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC---CEEECCSSCTTT
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC---CCEEEEECcchh
Confidence 457788999999999999999999999985 444 46665543
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=80.48 E-value=0.57 Score=50.18 Aligned_cols=32 Identities=22% Similarity=0.153 Sum_probs=25.5
Q ss_pred EEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEE
Q 040099 415 IAALVGTSGSGKSTVISLIQRFYDPQAGEVLI 446 (1236)
Q Consensus 415 ~~~ivG~sGsGKSTl~~ll~~~~~~~~G~i~~ 446 (1236)
++.|=|+-||||||+++.|...+....+.+.+
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~~~v~~~ 39 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGGSPTLYF 39 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCSSCEEEE
T ss_pred EEEEECCccCCHHHHHHHHHHHhccCCCeEEE
Confidence 57888999999999999999987655444433
|