Citrus Sinensis ID: 040104

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE
Secondary Structure (PSIPRED)
cHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHHccccEEEEEccccccccccHHHHHccccEEEEEEEccccHHHHHHHHHcccccccccEEEEEcccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHccccccEEEEccccHHHHHHHHHHcccccEEEEcccccccccccHHHHHccccEEEEcccccccHHHHHHHHHccccccHHHEEEEEEHHHcc
Coil and Loop (DISEMBL)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVClvgmghhemtvpltpaaarevDVVGVFRYKNTWPLCLEFLRsgkidikplvthrfgfsqke
Flexible Loop (DISEMBL)
DIAEEVEKidkamgtgidVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFlrsgkidikplVTHRFGFSQKE
Low Complexity Region (SEG)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE
Disordered region (IsUnstruct)
************MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFG*****
Disordered Region (DISOPRED)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFS***
Disordered Region (DISEMBL)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE
Disordered Region (DISPRO)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ**
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q1PSI9	366	L-idonate 5-dehydrogenase	no	no	1.0	0.286	0.8	5e-47
Q00796	357	Sorbitol dehydrogenase OS	yes	no	0.952	0.280	0.44	3e-20
P27867	357	Sorbitol dehydrogenase OS	yes	no	0.952	0.280	0.436	3e-20
Q4R639	357	Sorbitol dehydrogenase OS	N/A	no	0.914	0.268	0.447	5e-20
P07846	354	Sorbitol dehydrogenase OS	N/A	no	0.952	0.282	0.42	7e-20
Q58D31	356	Sorbitol dehydrogenase OS	yes	no	0.952	0.280	0.42	7e-20
Q64442	357	Sorbitol dehydrogenase OS	yes	no	0.952	0.280	0.42	9e-20
Q5R5F3	357	Sorbitol dehydrogenase OS	no	no	0.952	0.280	0.41	5e-19
Q96V44	377	L-arabinitol 4-dehydrogen	N/A	no	0.923	0.257	0.383	2e-15
A2QAC0	386	L-arabinitol 4-dehydrogen	yes	no	0.771	0.209	0.407	6e-15

>sp|Q1PSI9|IDND_VITVI L-idonate 5-dehydrogenase OS=Vitis vinifera GN=VIT_16s0100g00290 PE=1 SV=2

 Score =  185 bits (470), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 84/105 (80%), Positives = 94/105 (89%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ EEV KI   M TG+DVSFDC GFNKTMSTAL+ATRAGGKVCLVG+   EMTVPLTPA
Sbjct: 241 DLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPA 300

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVD+VG+FRY+NTWPLCLEFLRSGKID+KPL+THRF FSQK+
Sbjct: 301 AAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKD 345

Involved in the catabolism of ascorbate to tartrate. The enzyme has no activity with NADP(+).
Vitis vinifera (taxid: 29760)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: nEC: 8

>sp|Q00796|DHSO_HUMAN Sorbitol dehydrogenase OS=Homo sapiens GN=SORD PE=1 SV=4

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 63/100 (63%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA R
Sbjct: 231 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIR 290

Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 291 EVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEK 330

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P27867|DHSO_RAT Sorbitol dehydrogenase OS=Rattus norvegicus GN=Sord PE=1 SV=4

 Score = 97.1 bits (240), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 45/103 (43%), Positives = 68/103 (66%), Gaps = 3/103 (2%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  A
Sbjct: 231 DIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHA 287

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           A REVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 288 AVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRFPLEK 330

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Rattus norvegicus (taxid: 10116)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q4R639|DHSO_MACFA Sorbitol dehydrogenase OS=Macaca fascicularis GN=SORD PE=2 SV=3

 Score = 96.3 bits (238), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 43/96 (44%), Positives = 62/96 (64%)

Query: 8   KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDV 67
           K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD+
Sbjct: 235 KVEGLLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDI 294

Query: 68  VGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            GVFRY NTWP+ +  L S  ++IKPLVTHRF   +
Sbjct: 295 KGVFRYCNTWPVAISMLASKSVNIKPLVTHRFPLEK 330

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Macaca fascicularis (taxid: 9541)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|P07846|DHSO_SHEEP Sorbitol dehydrogenase OS=Ovis aries GN=SORD PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA R
Sbjct: 228 EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATR 287

Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 288 EVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEK 327

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Ovis aries (taxid: 9940)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q58D31|DHSO_BOVIN Sorbitol dehydrogenase OS=Bos taurus GN=SORD PE=2 SV=3

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA R
Sbjct: 230 EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATR 289

Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 290 EVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEK 329

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Bos taurus (taxid: 9913)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q64442|DHSO_MOUSE Sorbitol dehydrogenase OS=Mus musculus GN=Sord PE=1 SV=3

 Score = 95.5 bits (236), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E   K++  +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA R
Sbjct: 231 EIASKVESLLGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIR 290

Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 291 EVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRFPLEK 330

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Mus musculus (taxid: 10090)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q5R5F3|DHSO_PONAB Sorbitol dehydrogenase OS=Pongo abelii GN=SORD PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 41/100 (41%), Positives = 62/100 (62%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E   K++  +G   +V+ +C G   ++   + AT +GG + LVG+G    T+PL  AA R
Sbjct: 231 EIARKVEGLLGCKPEVTIECTGAGASIQAGIYATHSGGTLVLVGLGSEMTTIPLLHAAIR 290

Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPL+THRF   +
Sbjct: 291 EVDIKGVFRYCNTWPVAISMLASKSVNVKPLITHRFPLEK 330

Converts sorbitol to fructose. Part of the polyol pathway that plays an important role in sperm physiology. May play a role in the sperm motility by providing an energetic source for sperm.

Pongo abelii (taxid: 9601)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 4

>sp|Q96V44|LAD_HYPJE L-arabinitol 4-dehydrogenase OS=Hypocrea jecorina GN=lad1 PE=1 SV=1

 Score = 81.3 bits (199), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 38/99 (38%), Positives = 62/99 (62%), Gaps = 2/99 (2%)

Query: 3   AEEVEKIDKAMGTGID--VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           AEE  K   +   G++  V+ +C G   +++ A+ A++ GGKV ++G+G +E+++P   A
Sbjct: 251 AEETAKSIVSSFGGVEPAVTLECTGVESSIAAAIWASKFGGKVFVIGVGKNEISIPFMRA 310

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
           + REVD+   +RY NTWP  +  + SG ID+   VTHRF
Sbjct: 311 SVREVDIQLQYRYSNTWPRAIRLIESGVIDLSKFVTHRF 349

Catalyzes the NAD-dependent oxidation of L-arabinitol to L-xylulose in the fungal L-arabinose catabolic pathway. L-arabinose catabolism is important for using plant material as a carbon source. Can partially compensate for xylitol dehydrogenase in xdh1 mutants. Also oxidizes galactitol to L-xylo-3-hexulose as an alternative to the standard Leloir pathway for D-galactose metabolism. NAPD cannot act as a cosubstrate.

Hypocrea jecorina (taxid: 51453)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

>sp|A2QAC0|LAD_ASPNC L-arabinitol 4-dehydrogenase OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513) GN=ladA PE=1 SV=1

 Score = 79.3 bits (194), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 33/81 (40%), Positives = 55/81 (67%)

Query: 19  VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWP 78
           ++ +C G   ++++A+ + + GGKV ++G+G +EMTVP    +  E+D+   +RY NTWP
Sbjct: 266 IAMECTGVESSVASAIWSVKFGGKVFVIGVGKNEMTVPFMRLSTWEIDLQYQYRYCNTWP 325

Query: 79  LCLEFLRSGKIDIKPLVTHRF 99
             +  +R+G ID+K LVTHRF
Sbjct: 326 RAIRLVRNGVIDLKKLVTHRF 346

Catalyzes the NAD-dependent oxidation of L-arabinitol to L-xylulose in the fungal L-arabinose catabolic pathway. L-arabinose catabolism is important for using plant material as a carbon source. Not active with NAPD as cosubstrate.

Aspergillus niger (strain CBS 513.88 / FGSC A1513) (taxid: 425011)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
388491074	177	unknown [Lotus japonicus]	1.0	0.593	0.847	2e-49
350538545	355	sorbitol related enzyme [Solanum lycoper	1.0	0.295	0.857	2e-49
255539581	364	alcohol dehydrogenase, putative [Ricinus	1.0	0.288	0.866	3e-49
222424536	196	AT5G51970 [Arabidopsis thaliana]	1.0	0.535	0.857	2e-48
356559880	364	PREDICTED: L-idonate 5-dehydrogenase-lik	1.0	0.288	0.866	3e-48
358345353	317	L-idonate 5-dehydrogenase [Medicago trun	1.0	0.331	0.828	6e-48
358345351	362	L-idonate 5-dehydrogenase [Medicago trun	1.0	0.290	0.828	6e-48
217072128	362	unknown [Medicago truncatula] gi|3885198	1.0	0.290	0.828	6e-48
51971999	364	sorbitol dehydrogenase-like protein [Ara	1.0	0.288	0.857	7e-48
224120122	364	predicted protein [Populus trichocarpa]	1.0	0.288	0.838	7e-48

>gi|388491074|gb|AFK33603.1| unknown [Lotus japonicus]

 Score =  199 bits (506), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/105 (84%), Positives = 101/105 (96%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AEEV++I K MGTGIDV+FDCAGF+KTMSTAL+AT+ GG+VCLVGMGH EMTVPLTPA
Sbjct: 52  DVAEEVKQIHKVMGTGIDVTFDCAGFDKTMSTALTATKPGGRVCLVGMGHSEMTVPLTPA 111

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDV+G+FRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 112 AAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 156

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350538545|ref|NP_001234092.1| sorbitol related enzyme [Solanum lycopersicum] gi|78183416|dbj|BAE47038.1| sorbitol related enzyme [Solanum lycopersicum]

 Score =  199 bits (505), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 90/105 (85%), Positives = 98/105 (93%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+A ++E I KAMG GID SFDCAGFNKTMSTAL ATR GGKVCLVGMGHHEMTVPLTPA
Sbjct: 230 DVATDIENIQKAMGGGIDASFDCAGFNKTMSTALGATRPGGKVCLVGMGHHEMTVPLTPA 289

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDV+G+FRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQ+E
Sbjct: 290 AAREVDVIGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQEE 334

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539581|ref|XP_002510855.1| alcohol dehydrogenase, putative [Ricinus communis] gi|223549970|gb|EEF51457.1| alcohol dehydrogenase, putative [Ricinus communis]

 Score =  199 bits (505), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 101/105 (96%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+A+EV  I KAMGTG+DV+ DCAGFNKTMS+ALSATR+GGKVCLVGMGH+EMTVPLTPA
Sbjct: 239 DVADEVVLIHKAMGTGVDVTLDCAGFNKTMSSALSATRSGGKVCLVGMGHNEMTVPLTPA 298

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDV+GVFRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 299 AAREVDVIGVFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 343

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|222424536|dbj|BAH20223.1| AT5G51970 [Arabidopsis thaliana]

 Score =  196 bits (497), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 90/105 (85%), Positives = 97/105 (92%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+  EVE+I KAMG+ IDV+FDCAGFNKTMSTAL+ATR GGKVCLVGMGH  MTVPLTPA
Sbjct: 71  DVGSEVEQIQKAMGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPA 130

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVGVFRYKNTWPLCLEFL SGKID+KPL+THRFGFSQKE
Sbjct: 131 AAREVDVVGVFRYKNTWPLCLEFLTSGKIDVKPLITHRFGFSQKE 175

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559880|ref|XP_003548224.1| PREDICTED: L-idonate 5-dehydrogenase-like [Glycine max]

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 91/105 (86%), Positives = 98/105 (93%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AEEV +I K MG GIDV+FDCAGF+KTMSTALSAT+ GGKVCLVGMGH EMTVPLTPA
Sbjct: 239 DVAEEVVQIQKVMGAGIDVTFDCAGFDKTMSTALSATQPGGKVCLVGMGHSEMTVPLTPA 298

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVGVFRY NTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 299 AAREVDVVGVFRYMNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 343

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345353|ref|XP_003636745.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502680|gb|AES83883.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 99/105 (94%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AEEV++I   +G G+DV+FDCAGFNKTM+TAL+AT+ GGKVCLVGMGH EMTVPLTPA
Sbjct: 192 DVAEEVKQIHNVLGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPA 251

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVG+FRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 252 AAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 296

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358345351|ref|XP_003636744.1| L-idonate 5-dehydrogenase [Medicago truncatula] gi|355502679|gb|AES83882.1| L-idonate 5-dehydrogenase [Medicago truncatula]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 99/105 (94%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AEEV++I   +G G+DV+FDCAGFNKTM+TAL+AT+ GGKVCLVGMGH EMTVPLTPA
Sbjct: 237 DVAEEVKQIHNVLGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPA 296

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVG+FRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 297 AAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217072128|gb|ACJ84424.1| unknown [Medicago truncatula] gi|388519843|gb|AFK47983.1| unknown [Medicago truncatula]

 Score =  194 bits (493), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 87/105 (82%), Positives = 99/105 (94%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AEEV++I   +G G+DV+FDCAGFNKTM+TAL+AT+ GGKVCLVGMGH EMTVPLTPA
Sbjct: 237 DVAEEVKQIHNVLGAGVDVTFDCAGFNKTMTTALTATQPGGKVCLVGMGHSEMTVPLTPA 296

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVG+FRYKNTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 297 AAREVDVVGIFRYKNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 341

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51971999|dbj|BAD44664.1| sorbitol dehydrogenase-like protein [Arabidopsis thaliana]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 90/105 (85%), Positives = 97/105 (92%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+  EVE+I KAMG+ IDV+FDCAGFNKTMSTAL+ATR GGKVCLVGMGH  MTVPLTPA
Sbjct: 239 DVGSEVEQIQKAMGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPA 298

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVGVFRYKNTWPLCLEFL SGKID+KPL+THRFGFSQKE
Sbjct: 299 AAREVDVVGVFRYKNTWPLCLEFLTSGKIDVKPLITHRFGFSQKE 343

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120122|ref|XP_002318247.1| predicted protein [Populus trichocarpa] gi|222858920|gb|EEE96467.1| predicted protein [Populus trichocarpa]

 Score =  194 bits (492), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 88/105 (83%), Positives = 99/105 (94%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ +EV  I +AMGTG+DV+FDCAGFNKTMSTALSATR GGKVCL+GMGH+EMTVPLTPA
Sbjct: 239 DVDQEVVLIHQAMGTGVDVTFDCAGFNKTMSTALSATRPGGKVCLIGMGHNEMTVPLTPA 298

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDV+GVFRYKNTWPLC+EFL SGKID+KPL+THRFGFSQKE
Sbjct: 299 AAREVDVIGVFRYKNTWPLCIEFLSSGKIDVKPLITHRFGFSQKE 343

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2173093	364	AT5G51970 [Arabidopsis thalian	1.0	0.288	0.857	3.8e-46
UNIPROTKB|F1PXG0	356	SORD "Uncharacterized protein"	0.914	0.269	0.458	1.7e-20
ZFIN|ZDB-GENE-040426-1231	354	sord "sorbitol dehydrogenase"	0.914	0.271	0.484	2.7e-20
RGD|3734	357	Sord "sorbitol dehydrogenase"	0.914	0.268	0.454	4.5e-20
UNIPROTKB|H0YLA4	336	SORD "Sorbitol dehydrogenase"	0.914	0.285	0.458	5.7e-20
UNIPROTKB|Q00796	357	SORD "Sorbitol dehydrogenase"	0.914	0.268	0.458	6e-20
UNIPROTKB|F1P183	372	SORD "Uncharacterized protein"	0.914	0.258	0.447	6.5e-20
UNIPROTKB|P07846	354	SORD "Sorbitol dehydrogenase"	0.914	0.271	0.443	7.4e-20
UNIPROTKB|Q4R639	357	SORD "Sorbitol dehydrogenase"	0.876	0.257	0.467	1.1e-19
MGI|MGI:98266	357	Sord "sorbitol dehydrogenase"	0.914	0.268	0.437	1.1e-19

TAIR|locus:2173093 AT5G51970 [Arabidopsis thaliana (taxid:3702)]

 Score = 484 (175.4 bits), Expect = 3.8e-46, P = 3.8e-46
 Identities = 90/105 (85%), Positives = 97/105 (92%)

Query:     1 DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
             D+  EVE+I KAMG+ IDV+FDCAGFNKTMSTAL+ATR GGKVCLVGMGH  MTVPLTPA
Sbjct:   239 DVGSEVEQIQKAMGSNIDVTFDCAGFNKTMSTALAATRCGGKVCLVGMGHGIMTVPLTPA 298

Query:    61 AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
             AAREVDVVGVFRYKNTWPLCLEFL SGKID+KPL+THRFGFSQKE
Sbjct:   299 AAREVDVVGVFRYKNTWPLCLEFLTSGKIDVKPLITHRFGFSQKE 343

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0005829 "cytosol" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|F1PXG0 SORD "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 242 (90.2 bits), Expect = 1.7e-20, P = 1.7e-20
 Identities = 44/96 (45%), Positives = 62/96 (64%)

Query:     4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
             E   K++  +G   + + +C G    + + + ATRAGG + LVG+G    TVPLT A+ R
Sbjct:   230 EIASKVEDMLGCKPEATIECTGVESAIQSGIYATRAGGTLVLVGLGSEMTTVPLTHASTR 289

Query:    64 EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   290 EVDIKGVFRYCNTWPMAISMLASKAVNVKPLVTHRF 325

GO:0051287 "NAD binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

ZFIN|ZDB-GENE-040426-1231 sord "sorbitol dehydrogenase" [Danio rerio (taxid:7955)]

 Score = 240 (89.5 bits), Expect = 2.7e-20, P = 2.7e-20
 Identities = 48/99 (48%), Positives = 65/99 (65%)

Query:     1 DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
             D+A+ VE +   +G    +  +C G   ++ TA+ ATR+GG V  VG+G    TVPL  A
Sbjct:   228 DLAKRVEGM---LGCMPQICIECTGVQSSIQTAIYATRSGGVVVSVGLGAEMTTVPLLNA 284

Query:    61 AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             A REVD+ GVFRY NTWP+ +  L S K+++KPLVTHRF
Sbjct:   285 AVREVDIRGVFRYCNTWPVAISMLASKKVNVKPLVTHRF 323

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

RGD|3734 Sord "sorbitol dehydrogenase" [Rattus norvegicus (taxid:10116)]

 Score = 238 (88.8 bits), Expect = 4.5e-20, P = 4.5e-20
 Identities = 45/99 (45%), Positives = 67/99 (67%)

Query:     1 DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
             DIA++VE +   +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  A
Sbjct:   231 DIAKKVESV---LGSKPEVTIECTGAESSVQTGIYATHSGGTLVVVGMGPEMINLPLVHA 287

Query:    61 AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             A REVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   288 AVREVDIKGVFRYCNTWPMAVSMLASKTLNVKPLVTHRF 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA;ISO

GO:0005575 "cellular_component" evidence=ND

GO:0005739 "mitochondrion" evidence=ISO

GO:0006060 "sorbitol metabolic process" evidence=ISO

GO:0006062 "sorbitol catabolic process" evidence=ISO

GO:0006970 "response to osmotic stress" evidence=IEP

GO:0008270 "zinc ion binding" evidence=ISO;IDA

GO:0009725 "response to hormone stimulus" evidence=IDA

GO:0016020 "membrane" evidence=ISO

GO:0030317 "sperm motility" evidence=ISO;ISS

GO:0031514 "motile cilium" evidence=ISS

GO:0031667 "response to nutrient levels" evidence=IEP

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0042493 "response to drug" evidence=IEP

GO:0042802 "identical protein binding" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=ISO

GO:0046686 "response to cadmium ion" evidence=IDA

GO:0046688 "response to copper ion" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=ISO

GO:0051164 "L-xylitol metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO

UNIPROTKB|H0YLA4 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 5.7e-20, P = 5.7e-20
 Identities = 44/96 (45%), Positives = 62/96 (64%)

Query:     4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
             E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA R
Sbjct:   210 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIR 269

Query:    64 EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   270 EVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRF 305

GO:0000166 "nucleotide binding" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA

GO:0016491 "oxidoreductase activity" evidence=IEA

UNIPROTKB|Q00796 SORD "Sorbitol dehydrogenase" [Homo sapiens (taxid:9606)]

 Score = 237 (88.5 bits), Expect = 6.0e-20, P = 6.0e-20
 Identities = 44/96 (45%), Positives = 62/96 (64%)

Query:     4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
             E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA R
Sbjct:   231 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGNLVLVGLGSEMTTVPLLHAAIR 290

Query:    64 EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   291 EVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRF 326

GO:0031966 "mitochondrial membrane" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISS;IDA

GO:0008270 "zinc ion binding" evidence=ISS;IDA

GO:0006006 "glucose metabolic process" evidence=TAS

GO:0006062 "sorbitol catabolic process" evidence=IDA

GO:0051287 "NAD binding" evidence=IDA

GO:0030246 "carbohydrate binding" evidence=NAS

GO:0016020 "membrane" evidence=IDA

GO:0046370 "fructose biosynthetic process" evidence=IDA

GO:0051160 "L-xylitol catabolic process" evidence=IDA

GO:0051164 "L-xylitol metabolic process" evidence=IDA

GO:0005615 "extracellular space" evidence=TAS

GO:0030317 "sperm motility" evidence=ISS;NAS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|F1P183 SORD "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 238 (88.8 bits), Expect = 6.5e-20, P = 6.5e-20
 Identities = 43/96 (44%), Positives = 64/96 (66%)

Query:     4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
             E   K++  +G   +++ +C G    +  ++ ATR+GG + LVG+G   +TVP+  AA R
Sbjct:   246 EVAAKVESLLGCMPEITVECTGVQACIQASIYATRSGGTLVLVGLGPEMVTVPIVNAAVR 305

Query:    64 EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             EVD+ G+FRY NTWP+ +  L S +I+IKPLVTHRF
Sbjct:   306 EVDIRGIFRYCNTWPVAISLLASKRINIKPLVTHRF 341

GO:0008270 "zinc ion binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

GO:0006062 "sorbitol catabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030317 "sperm motility" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|P07846 SORD "Sorbitol dehydrogenase" [Ovis aries (taxid:9940)]

 Score = 236 (88.1 bits), Expect = 7.4e-20, P = 7.4e-20
 Identities = 43/97 (44%), Positives = 65/97 (67%)

Query:     4 EEV-EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA 62
             EE+ +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA 
Sbjct:   227 EEIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAAT 286

Query:    63 REVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             REVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   287 REVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRF 323

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=IDA

GO:0008270 "zinc ion binding" evidence=IDA

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

UNIPROTKB|Q4R639 SORD "Sorbitol dehydrogenase" [Macaca fascicularis (taxid:9541)]

 Score = 235 (87.8 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 43/92 (46%), Positives = 61/92 (66%)

Query:     8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDV 67
             K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    T+PL  AA REVD+
Sbjct:   235 KVEGLLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTIPLLHAAVREVDI 294

Query:    68 VGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
              GVFRY NTWP+ +  L S  ++IKPLVTHRF
Sbjct:   295 KGVFRYCNTWPVAISMLASKSVNIKPLVTHRF 326

GO:0030317 "sperm motility" evidence=ISS

GO:0031514 "motile cilium" evidence=ISS

MGI|MGI:98266 Sord "sorbitol dehydrogenase" [Mus musculus (taxid:10090)]

 Score = 235 (87.8 bits), Expect = 1.1e-19, P = 1.1e-19
 Identities = 42/96 (43%), Positives = 63/96 (65%)

Query:     4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
             E   K++  +G+  +V+ +C G   ++ T + AT +GG + +VGMG   + +PL  AA R
Sbjct:   231 EIASKVESLLGSKPEVTIECTGAESSVQTGIYATHSGGTLVIVGMGAEMVNLPLVHAAIR 290

Query:    64 EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct:   291 EVDIKGVFRYCNTWPMAISMLASKTLNVKPLVTHRF 326

GO:0000166 "nucleotide binding" evidence=IEA

GO:0003939 "L-iditol 2-dehydrogenase activity" evidence=ISO;IDA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005929 "cilium" evidence=IEA

GO:0006060 "sorbitol metabolic process" evidence=IDA

GO:0006062 "sorbitol catabolic process" evidence=ISO

GO:0008270 "zinc ion binding" evidence=ISO

GO:0009725 "response to hormone stimulus" evidence=ISO

GO:0016020 "membrane" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0030317 "sperm motility" evidence=IDA

GO:0042802 "identical protein binding" evidence=ISO

GO:0042995 "cell projection" evidence=IEA

GO:0046370 "fructose biosynthetic process" evidence=ISO

GO:0046686 "response to cadmium ion" evidence=ISO

GO:0046688 "response to copper ion" evidence=ISO

GO:0046872 "metal ion binding" evidence=IEA

GO:0051160 "L-xylitol catabolic process" evidence=ISO

GO:0051164 "L-xylitol metabolic process" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=ISO;IDA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
PLN02702	364	PLN02702, PLN02702, L-idonate 5-dehydrogenase	5e-73
cd05285	343	cd05285, sorbitol_DH, Sorbitol dehydrogenase	3e-42
cd08232	339	cd08232, idonate-5-DH, L-idonate 5-dehydrogenase	3e-19
COG1063	350	COG1063, Tdh, Threonine dehydrogenase and related	2e-17
cd08234	334	cd08234, threonine_DH_like, L-threonine dehydrogen	4e-15
pfam00107	131	pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase	2e-14
cd08233	351	cd08233, butanediol_DH_like, (2R,3R)-2,3-butanedio	2e-14
cd08236	343	cd08236, sugar_DH, NAD(P)-dependent sugar dehydrog	5e-14
cd08254	338	cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-e	1e-13
COG1062	366	COG1062, AdhC, Zn-dependent alcohol dehydrogenases	1e-13
cd08284	344	cd08284, FDH_like_2, Glutathione-dependent formald	1e-11
PRK09880	343	PRK09880, PRK09880, L-idonate 5-dehydrogenase; Pro	3e-11
cd08279	363	cd08279, Zn_ADH_class_III, Class III alcohol dehyd	4e-11
cd08235	343	cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenas	3e-10
cd08261	337	cd08261, Zn_ADH7, Alcohol dehydrogenases of the MD	7e-10
cd05278	347	cd05278, FDH_like, Formaldehyde dehydrogenases	1e-09
cd08239	339	cd08239, THR_DH_like, L-threonine dehydrogenase (T	2e-09
cd08263	367	cd08263, Zn_ADH10, Alcohol dehydrogenases of the M	3e-09
cd05284	340	cd05284, arabinose_DH_like, D-arabinose dehydrogen	4e-09
TIGR00692	340	TIGR00692, tdh, L-threonine 3-dehydrogenase	7e-09
cd08258	306	cd08258, Zn_ADH4, Alcohol dehydrogenases of the MD	8e-09
cd05281	341	cd05281, TDH, Threonine dehydrogenase	1e-08
cd05188	271	cd05188, MDR, Medium chain reductase/dehydrogenase	2e-08
cd08286	345	cd08286, FDH_like_ADH2, formaldehyde dehydrogenase	2e-08
cd08260	345	cd08260, Zn_ADH6, Alcohol dehydrogenases of the MD	3e-08
cd08277	365	cd08277, liver_alcohol_DH_like, Liver alcohol dehy	4e-08
cd08281	371	cd08281, liver_ADH_like1, Zinc-dependent alcohol d	4e-08
cd08301	369	cd08301, alcohol_DH_plants, Plant alcohol dehydrog	2e-07
cd05279	365	cd05279, Zn_ADH1, Liver alcohol dehydrogenase and	3e-07
cd08242	319	cd08242, MDR_like, Medium chain dehydrogenases/red	4e-07
COG0604	326	COG0604, Qor, NADPH:quinone reductase and related	1e-06
cd08255	277	cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochloro	2e-06
cd08285	351	cd08285, NADP_ADH, NADP(H)-dependent alcohol dehyd	6e-06
cd08278	365	cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydro	9e-06
COG1064	339	COG1064, AdhP, Zn-dependent alcohol dehydrogenases	1e-05
cd08287	345	cd08287, FDH_like_ADH3, formaldehyde dehydrogenase	3e-05
cd08269	312	cd08269, Zn_ADH9, Alcohol dehydrogenases of the MD	5e-05
PLN02740	381	PLN02740, PLN02740, Alcohol dehydrogenase-like	7e-05
cd08299	373	cd08299, alcohol_DH_class_I_II_IV, class I, II, IV	7e-05
PRK05396	341	PRK05396, tdh, L-threonine 3-dehydrogenase; Valida	8e-05
cd08240	350	cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexa	2e-04
cd08256	350	cd08256, Zn_ADH2, Alcohol dehydrogenases of the MD	2e-04
cd08231	361	cd08231, MDR_TM0436_like, Hypothetical enzyme TM04	4e-04
TIGR03201	349	TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1	7e-04
cd08283	386	cd08283, FDH_like_1, Glutathione-dependent formald	7e-04
cd08300	368	cd08300, alcohol_DH_class_III, class III alcohol d	0.001
cd08259	332	cd08259, Zn_ADH5, Alcohol dehydrogenases of the MD	0.002
TIGR03989	369	TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 fa	0.002
pfam13602	129	pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenas	0.003
cd08262	341	cd08262, Zn_ADH8, Alcohol dehydrogenases of the MD	0.004
cd08253	325	cd08253, zeta_crystallin, Zeta-crystallin with NAD	0.004

>gnl|CDD|215378 PLN02702, PLN02702, L-idonate 5-dehydrogenase

 Score =  220 bits (562), Expect = 5e-73
 Identities = 93/105 (88%), Positives = 99/105 (94%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+  EVE+I KAMG GIDVSFDC GFNKTMSTAL ATRAGGKVCLVGMGH+EMTVPLTPA
Sbjct: 239 DVESEVEEIQKAMGGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPA 298

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           AAREVDVVGVFRY+NTWPLCLEFLRSGKID+KPL+THRFGFSQKE
Sbjct: 299 AAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKPLITHRFGFSQKE 343

Length = 364

>gnl|CDD|176188 cd05285, sorbitol_DH, Sorbitol dehydrogenase

 Score =  140 bits (355), Expect = 3e-42
 Identities = 52/101 (51%), Positives = 68/101 (67%), Gaps = 1/101 (0%)

Query: 4   EEVEKIDKAMGT-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA 62
           E  EKI + +G  G DV  +C G    + TA+ ATR GG V LVGMG  E+T+PL+ A+ 
Sbjct: 221 ESAEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASL 280

Query: 63  REVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           RE+D+ GVFRY NT+P  +E L SGK+D+KPL+THRF    
Sbjct: 281 REIDIRGVFRYANTYPTAIELLASGKVDVKPLITHRFPLED 321

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 343

>gnl|CDD|176194 cd08232, idonate-5-DH, L-idonate 5-dehydrogenase

 Score = 80.0 bits (198), Expect = 3e-19
 Identities = 31/103 (30%), Positives = 54/103 (52%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           ++A +      A     DV F+ +G    +++AL   R GG V  VGM    + +PL   
Sbjct: 216 NLARDPLAAYAADKGDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNAL 275

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            A+E+D+ G FR+ + +   +  L +G+ID++PL+T  F   +
Sbjct: 276 VAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPLITAVFPLEE 318

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|223991 COG1063, Tdh, Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

 Score = 74.7 bits (184), Expect = 2e-17
 Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 3/104 (2%)

Query: 3   AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT-VPLTPAA 61
               E ++   G G DV  +  G    +  AL A R GG V +VG+   E   +P     
Sbjct: 225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVV 284

Query: 62  AREVDVVGVFR--YKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           ++E+ + G  R   +  +   L+ L SGKID + L+THR     
Sbjct: 285 SKELTLRGSLRPSGREDFERALDLLASGKIDPEKLITHRLPLDD 328

Length = 350

>gnl|CDD|176196 cd08234, threonine_DH_like, L-threonine dehydrogenase

 Score = 68.7 bits (169), Expect = 4e-15
 Identities = 32/105 (30%), Positives = 51/105 (48%), Gaps = 2/105 (1%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTP- 59
              E+ E   +    G DV  +  G  KT+  A+   R GG V + G+   +  V ++P 
Sbjct: 211 PSREDPEAQKEDNPYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPF 270

Query: 60  -AAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               +E+ ++G F    T+P  +  L SGKID+K LV+HR    +
Sbjct: 271 EIFQKELTIIGSFINPYTFPRAIALLESGKIDVKGLVSHRLPLEE 315

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 334

>gnl|CDD|215721 pfam00107, ADH_zinc_N, Zinc-binding dehydrogenase

 Score = 63.9 bits (156), Expect = 2e-14
 Identities = 27/86 (31%), Positives = 40/86 (46%), Gaps = 4/86 (4%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHHEMTVPLTP 59
           D  E V ++    G G+DV  DC G   T+  AL   R GG+V +VG+ G   +  PL  
Sbjct: 46  DFVERVREL--TGGRGVDVVIDCVGAPATLEQALELLRPGGRVVVVGLPGGAPVPFPLRD 103

Query: 60  AAAREVDVVGVFRYK-NTWPLCLEFL 84
              +E+ ++G        +   LE L
Sbjct: 104 LLLKELTILGSLGGGREEFEEALELL 129

Length = 131

>gnl|CDD|176195 cd08233, butanediol_DH_like, (2R,3R)-2,3-butanediol dehydrogenase

 Score = 66.4 bits (163), Expect = 2e-14
 Identities = 34/99 (34%), Positives = 50/99 (50%), Gaps = 3/99 (3%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+  EV K+    G G+DVSFDCAG   T+ TA+ A R  G    V +    ++      
Sbjct: 228 DVVAEVRKLTG--GGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDL 285

Query: 61  AAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHR 98
             +E  + G   Y +  +   ++ L SGKID +PL+T R
Sbjct: 286 VLKEKTLTGSICYTREDFEEVIDLLASGKIDAEPLITSR 324

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Length = 351

>gnl|CDD|176198 cd08236, sugar_DH, NAD(P)-dependent sugar dehydrogenases

 Score = 65.7 bits (161), Expect = 5e-14
 Identities = 36/113 (31%), Positives = 56/113 (49%), Gaps = 16/113 (14%)

Query: 4   EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA 62
           E+VEK+ +   G G D+  + AG   T+  AL+  R GGKV LVG+ + ++T       A
Sbjct: 214 EDVEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVT---LSEEA 270

Query: 63  ------REVDVVGVFRYKNT------WPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                 +E+ + G +   +       W   L+ L SGKI ++PL+THR     
Sbjct: 271 FEKILRKELTIQGSWNSYSAPFPGDEWRTALDLLASGKIKVEPLITHRLPLED 323

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Horse liver alcohol dehydrogenase is a dimeric enzyme and each subunit has two domains. The NAD binding domain is in a Rossmann fold and the catalytic domain contains a zinc ion to which substrates bind. There is a cleft between the domains that closes upon formation of the ternary complex. Length = 343

>gnl|CDD|176216 cd08254, hydroxyacyl_CoA_DH, 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 32/94 (34%), Positives = 48/94 (51%), Gaps = 3/94 (3%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREV 65
            +K    +G G DV FD  G   T   A  A + GG++ +VG+G  ++TV L+   ARE+
Sbjct: 222 KDKKAAGLGGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIAREL 281

Query: 66  DVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHR 98
            ++G F       P  L+ +  GK+D  P V  R
Sbjct: 282 RIIGSFGGTPEDLPEVLDLIAKGKLD--PQVETR 313

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 338

>gnl|CDD|223990 COG1062, AdhC, Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

 Score = 64.6 bits (158), Expect = 1e-13
 Identities = 26/113 (23%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           ++ + VE I +    G D +F+C G  + M  AL AT  GG   ++G+      +   P 
Sbjct: 239 EVDDVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRP- 297

Query: 61  AAREVDVVGVFRYKNTW----------PLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                 +V    +K +           P  ++   +GK+ +  LVTH      
Sbjct: 298 ----FQLVTGRVWKGSAFGGARPRSDIPRLVDLYMAGKLPLDRLVTHTIPLED 346

Length = 366

>gnl|CDD|176244 cd08284, FDH_like_2, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

 Score = 58.8 bits (143), Expect = 1e-11
 Identities = 29/104 (27%), Positives = 48/104 (46%), Gaps = 3/104 (2%)

Query: 3   AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPA 60
           AE VE++ +A  G G DV  +  G    +  A    R GG +  VG+    E   P   A
Sbjct: 221 AEPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDA 280

Query: 61  AAREVDV-VGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
             + + +  G    ++ +P  L  L SG++D++ L+ HR    +
Sbjct: 281 YNKNLTLRFGRCPVRSLFPELLPLLESGRLDLEFLIDHRMPLEE 324

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 344

>gnl|CDD|182130 PRK09880, PRK09880, L-idonate 5-dehydrogenase; Provisional

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 27/88 (30%), Positives = 47/88 (53%)

Query: 18  DVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTW 77
           DVSF+ +G   +++T L  TRA G +  VGMG      P+     +E+ + G FR+   +
Sbjct: 237 DVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEF 296

Query: 78  PLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
              + +L +G I+  PL++  + F+  E
Sbjct: 297 NTAVSWLANGVINPLPLLSAEYPFTDLE 324

Length = 343

>gnl|CDD|176240 cd08279, Zn_ADH_class_III, Class III alcohol dehydrogenase

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 32/109 (29%), Positives = 47/109 (43%), Gaps = 8/109 (7%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D  E V  +    G G D +F+  G   T+  AL+ TR GG   +VGMG    TV L   
Sbjct: 238 DAVEAVRDL--TDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPAL 295

Query: 61  --AAREVDVVGVF----RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                E  + G        +   P  L+  R+G++ +  LVT R+   +
Sbjct: 296 ELFLSEKRLQGSLYGSANPRRDIPRLLDLYRAGRLKLDELVTRRYSLDE 344

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 363

>gnl|CDD|176197 cd08235, iditol_2_DH_like, L-iditol 2-dehydrogenase

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 35/110 (31%), Positives = 50/110 (45%), Gaps = 13/110 (11%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ E+V ++    G G DV     G  +  + AL   R GG++   G      TV + P 
Sbjct: 221 DLVEKVRELTD--GRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPN 278

Query: 61  A--AREVDVVGVFR-----YKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               RE+ + G +      YK      LE + SGKID+K L+THRF    
Sbjct: 279 LIHYREITITGSYAASPEDYKEA----LELIASGKIDVKDLITHRFPLED 324

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 343

>gnl|CDD|176222 cd08261, Zn_ADH7, Alcohol dehydrogenases of the MDR family

 Score = 53.7 bits (130), Expect = 7e-10
 Identities = 30/89 (33%), Positives = 45/89 (50%), Gaps = 1/89 (1%)

Query: 14  GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY 73
           G G DV  D  G   +M  A+     GG+V LVG+    +T P      +E+ ++G    
Sbjct: 225 GEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNA 284

Query: 74  KNT-WPLCLEFLRSGKIDIKPLVTHRFGF 101
               +P  ++ L SGK+D + L+THRF F
Sbjct: 285 TREDFPDVIDLLESGKVDPEALITHRFPF 313

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 337

>gnl|CDD|176181 cd05278, FDH_like, Formaldehyde dehydrogenases

 Score = 53.4 bits (129), Expect = 1e-09
 Identities = 29/105 (27%), Positives = 47/105 (44%), Gaps = 4/105 (3%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHHEMTVPLTP 59
           DI E++ ++    G G+D   +  GF +T   A+   R GG +  VG+ G  +    L  
Sbjct: 223 DIVEQILELTG--GRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGE 280

Query: 60  AAAREVDV-VGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              + +    G+   +   P  L+ +  GKID   L+THRF    
Sbjct: 281 WFGKNLTFKTGLVPVRARMPELLDLIEEGKIDPSKLITHRFPLDD 325

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 347

>gnl|CDD|176201 cd08239, THR_DH_like, L-threonine dehydrogenase (TDH)-like

 Score = 52.7 bits (127), Expect = 2e-09
 Identities = 30/95 (31%), Positives = 48/95 (50%), Gaps = 9/95 (9%)

Query: 14  GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA---AREVDVVGV 70
           G G DV+ +C+G       AL A R  G++ LVG G     + +  +     ++  ++G 
Sbjct: 229 GAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGG---ELTIEVSNDLIRKQRTLIGS 285

Query: 71  FRYKNTWPL--CLEFLRSGKIDIKPLVTHRFGFSQ 103
           + Y +   +  C EFL   K+++  LVTHRFG  Q
Sbjct: 286 W-YFSVPDMEECAEFLARHKLEVDRLVTHRFGLDQ 319

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 339

>gnl|CDD|176224 cd08263, Zn_ADH10, Alcohol dehydrogenases of the MDR family

 Score = 52.0 bits (125), Expect = 3e-09
 Identities = 29/107 (27%), Positives = 50/107 (46%), Gaps = 6/107 (5%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT--VPLT 58
           D    + +I    G G+DV  +  G  +T   AL   R GG+  +VG+     T  +P+T
Sbjct: 243 DAVAAIREI--TGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPIT 300

Query: 59  PAAAREVDVVGVFRYK--NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               R + ++G +  +     P  +    SGK+D + LVTH++   +
Sbjct: 301 RLVRRGIKIIGSYGARPRQDLPELVGLAASGKLDPEALVTHKYKLEE 347

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 367

>gnl|CDD|176187 cd05284, arabinose_DH_like, D-arabinose dehydrogenase

 Score = 51.8 bits (125), Expect = 4e-09
 Identities = 21/71 (29%), Positives = 34/71 (47%), Gaps = 3/71 (4%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ EEV ++    G G D   D  G ++T++ A      GG+  +VG G H   +P +  
Sbjct: 222 DVVEEVRELTG--GRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDL 278

Query: 61  AAREVDVVGVF 71
              E+ V+G  
Sbjct: 279 VPTEISVIGSL 289

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 340

>gnl|CDD|129775 TIGR00692, tdh, L-threonine 3-dehydrogenase

 Score = 51.0 bits (122), Expect = 7e-09
 Identities = 32/107 (29%), Positives = 55/107 (51%), Gaps = 5/107 (4%)

Query: 4   EEVEKI--DKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA 61
           E+V K   D   G G+DV  + +G  K +   L A   GG+V L+G+   ++T+  T   
Sbjct: 216 EDVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKV 275

Query: 62  A-REVDVVGVFRYK--NTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
             + + + G+       TW      ++SGK+D+ P++TH+F F + E
Sbjct: 276 IFKGLTIYGITGRHMFETWYTVSRLIQSGKLDLDPIITHKFKFDKFE 322

This protein is a tetrameric, zinc-binding, NAD-dependent enzyme of threonine catabolism. Closely related proteins include sorbitol dehydrogenase, xylitol dehydrogenase, and benzyl alcohol dehydrogenase. Eukaryotic examples of this enzyme have been demonstrated experimentally but do not appear in database search results.E. coli His-90 modulates substrate specificity and is believed part of the active site [Energy metabolism, Amino acids and amines]. Length = 340

>gnl|CDD|176219 cd08258, Zn_ADH4, Alcohol dehydrogenases of the MDR family

 Score = 50.8 bits (122), Expect = 8e-09
 Identities = 26/90 (28%), Positives = 38/90 (42%), Gaps = 6/90 (6%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+AE V +I    G G DV  +C+G    +  AL   R GG++  VG+        +   
Sbjct: 220 DLAELVNEITD--GDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLA-ASIDVE 276

Query: 61  AA--REVDVVGVFRYKNT-WPLCLEFLRSG 87
               +E+ V+G        W   L  L SG
Sbjct: 277 RIIQKELSVIGSRSSTPASWETALRLLASG 306

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 306

>gnl|CDD|176184 cd05281, TDH, Threonine dehydrogenase

 Score = 50.3 bits (121), Expect = 1e-08
 Identities = 30/103 (29%), Positives = 49/103 (47%), Gaps = 3/103 (2%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA-RE 64
           VE      GTG+DV  + +G  K +   L A   GG+V ++G+    + + L      + 
Sbjct: 221 VEVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKG 280

Query: 65  VDVVGVFRYK--NTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
           + V G+   K   TW      L+SGK+D+ P++TH+      E
Sbjct: 281 LTVQGITGRKMFETWYQVSALLKSGKVDLSPVITHKLPLEDFE 323

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Length = 341

>gnl|CDD|176178 cd05188, MDR, Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 49.6 bits (119), Expect = 2e-08
 Identities = 20/81 (24%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTPAAARE 64
            E++    G G DV  D  G  +T++ AL   R GG++ +VG          L     +E
Sbjct: 191 EEELRLTGGGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKE 250

Query: 65  VDVVGVFRY-KNTWPLCLEFL 84
           + ++G     +  +   L+ L
Sbjct: 251 LTIIGSTGGTREDFEEALDLL 271

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Other MDR members have only a catalytic zinc, and some contain no coordinated zinc. Length = 271

>gnl|CDD|176246 cd08286, FDH_like_ADH2, formaldehyde dehydrogenase (FDH)-like

 Score = 49.9 bits (120), Expect = 2e-08
 Identities = 30/105 (28%), Positives = 47/105 (44%), Gaps = 2/105 (1%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D  E+V ++    G G+DV  +  G   T          GG +  VG+    + + L   
Sbjct: 222 DAIEQVLELTD--GRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKL 279

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
             + + +       NT P+ L+ + SGK+D   LVTHRF  S+ E
Sbjct: 280 WIKNITITTGLVDTNTTPMLLKLVSSGKLDPSKLVTHRFKLSEIE 324

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176221 cd08260, Zn_ADH6, Alcohol dehydrogenases of the MDR family

 Score = 49.5 bits (119), Expect = 3e-08
 Identities = 30/111 (27%), Positives = 49/111 (44%), Gaps = 15/111 (13%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM---GHHEMTVPL 57
           D+A  V  +    G G  VS D  G  +T   ++++ R  G+   VG+       + +P+
Sbjct: 221 DVAAAVRDL---TGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPM 277

Query: 58  TPAAAREVDVVGVF-----RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               ARE+++VG       RY       L  + SGK+D +PLV       +
Sbjct: 278 DRVVARELEIVGSHGMPAHRY----DAMLALIASGKLDPEPLVGRTISLDE 324

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 345

>gnl|CDD|176238 cd08277, liver_alcohol_DH_like, Liver alcohol dehydrogenase

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 28/101 (27%), Positives = 43/101 (42%), Gaps = 5/101 (4%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGH--HEMTVPLTPAAA 62
            E I +  G G+D SF+C G    M+ AL +T+ G G   +VG+         P      
Sbjct: 244 SEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLILG 303

Query: 63  REVD--VVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGF 101
           R       G F+ ++  P  +    + K D+  L+TH   F
Sbjct: 304 RTWKGSFFGGFKSRSDVPKLVSKYMNKKFDLDELITHVLPF 344

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176241 cd08281, liver_ADH_like1, Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

 Score = 48.9 bits (117), Expect = 4e-08
 Identities = 28/111 (25%), Positives = 46/111 (41%), Gaps = 20/111 (18%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAR 63
           VE++ +  G G+D +F+ AG    + TA   TR GG     G+      ++VP     A 
Sbjct: 249 VEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAE 308

Query: 64  EVDVVG-----------VFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           E  + G           + RY   +        SG++ +  L+THR    +
Sbjct: 309 ERTLKGSYMGSCVPRRDIPRYLALY-------LSGRLPVDKLLTHRLPLDE 352

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to the corresponding carboxylic acid and alcohol. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 371

>gnl|CDD|176261 cd08301, alcohol_DH_plants, Plant alcohol dehydrogenase

 Score = 47.3 bits (113), Expect = 2e-07
 Identities = 27/110 (24%), Positives = 49/110 (44%), Gaps = 7/110 (6%)

Query: 1   DIAEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLT 58
           D  + V+++   M G G+D SF+C G    M +A      G G   L+G+ H +      
Sbjct: 241 DHDKPVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTH 300

Query: 59  PA---AAREV--DVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           P      R +   + G ++ K   P  +E     +++++  +TH   FS+
Sbjct: 301 PMNLLNGRTLKGTLFGGYKPKTDLPNLVEKYMKKELELEKFITHELPFSE 350

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 369

>gnl|CDD|176182 cd05279, Zn_ADH1, Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

 Score = 46.3 bits (110), Expect = 3e-07
 Identities = 28/102 (27%), Positives = 43/102 (42%), Gaps = 6/102 (5%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGHHEMTVPLTPAAARE 64
           VE + +    G+D +F+  G   T+  AL ATR  GG   +VG+        L P     
Sbjct: 243 VEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDLLT 302

Query: 65  -----VDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGF 101
                  V G ++ K++ P  +   R  K  +  L+TH   F
Sbjct: 303 GRTIKGTVFGGWKSKDSVPKLVALYRQKKFPLDELITHVLPF 344

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the substrate binding pocket and therefore in substrate specificity. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 365

>gnl|CDD|176204 cd08242, MDR_like, Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

 Score = 46.1 bits (110), Expect = 4e-07
 Identities = 26/94 (27%), Positives = 36/94 (38%), Gaps = 10/94 (10%)

Query: 14  GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVV----G 69
           G G DV  +  G    +  AL   R  G V L        +  LT A   E+ +V    G
Sbjct: 212 GGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCG 271

Query: 70  VFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            F         L  LR G +D+ PL+T  +   +
Sbjct: 272 PF------APALRLLRKGLVDVDPLITAVYPLEE 299

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 319

>gnl|CDD|223677 COG0604, Qor, NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 26/112 (23%), Positives = 48/112 (42%), Gaps = 14/112 (12%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM--GHHEMTVPLT 58
           D  E+V ++    G G+DV  D  G   T + +L+A   GG++  +G   G   + + L 
Sbjct: 198 DFVEQVREL--TGGKGVDVVLDTVG-GDTFAASLAALAPGGRLVSIGALSGGPPVPLNLL 254

Query: 59  PAAAREVDVVGVFRYKNTWPL-------CLEFLRSGKIDIKPLVTHRFGFSQ 103
           P   + + + GV                  + L SGK+  KP++   +  ++
Sbjct: 255 PLLGKRLTLRGVTLGSRDPEALAEALAELFDLLASGKL--KPVIDRVYPLAE 304

Length = 326

>gnl|CDD|176217 cd08255, 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like, 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

 Score = 43.8 bits (104), Expect = 2e-06
 Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 19/109 (17%)

Query: 10  DKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVV- 68
           D+  G G DV  + +G    + TAL   R  G+V LVG    +  +       + + +  
Sbjct: 153 DEIGGRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLKPLLLGEEFHFKRLPIRS 212

Query: 69  ----GVFRYKNTWP----------LCLEFLRSGKIDIKPLVTHRFGFSQ 103
               G+ RY    P            L+ L  G+++   L+THR  F  
Sbjct: 213 SQVYGIGRY--DRPRRWTEARNLEEALDLLAEGRLE--ALITHRVPFED 257

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 277

>gnl|CDD|176245 cd08285, NADP_ADH, NADP(H)-dependent alcohol dehydrogenases

 Score = 42.6 bits (101), Expect = 6e-06
 Identities = 28/116 (24%), Positives = 42/116 (36%), Gaps = 17/116 (14%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ E++  +    G G+D      G   T   AL   + GG +  V     +  +P+   
Sbjct: 222 DVVEQI--LKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPI--- 276

Query: 61  AAREVDVVGVFRYKNTWPLC----------LEFLRSGKID-IKPLVTHRFGFSQKE 105
             RE   VG+        LC             +  G++D  K L  H FGF   E
Sbjct: 277 -PREEWGVGMGHKTINGGLCPGGRLRMERLASLIEYGRVDPSKLLTHHFFGFDDIE 331

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 351

>gnl|CDD|176239 cd08278, benzyl_alcohol_DH, Benzyl alcohol dehydrogenase

 Score = 42.1 bits (100), Expect = 9e-06
 Identities = 15/52 (28%), Positives = 21/52 (40%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL 57
           V  I +  G G+D + D  G    +  A+ A    G + LVG       V L
Sbjct: 244 VAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTL 295

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 365

>gnl|CDD|223992 COG1064, AdhP, Zn-dependent alcohol dehydrogenases [General function prediction only]

 Score = 41.8 bits (99), Expect = 1e-05
 Identities = 28/106 (26%), Positives = 42/106 (39%), Gaps = 13/106 (12%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM--GHHEMTVPLT 58
           D  E V++I        D   D  G   T+  +L A R GG + LVG+  G     +P  
Sbjct: 221 DALEAVKEI-------ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAF 272

Query: 59  PAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               +E+ +VG     +      L+F   GK  IKP +       +
Sbjct: 273 LLILKEISIVGSLVGTRADLEEALDFAAEGK--IKPEILETIPLDE 316

Length = 339

>gnl|CDD|176247 cd08287, FDH_like_ADH3, formaldehyde dehydrogenase (FDH)-like

 Score = 40.8 bits (96), Expect = 3e-05
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 10/94 (10%)

Query: 3   AEEVEKIDKAM--GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
            E V ++ + +  G G D   +C G  ++M  A++  R GG+V  VG+ H  + + +   
Sbjct: 223 EEAVARV-RELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVREL 281

Query: 61  AAREVDVVG----VFRYKNTWPLCLEFLRSGKID 90
             R V + G    V RY    P  L+ + +G+I+
Sbjct: 282 FFRNVGLAGGPAPVRRYL---PELLDDVLAGRIN 312

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 345

>gnl|CDD|176230 cd08269, Zn_ADH9, Alcohol dehydrogenases of the MDR family

 Score = 40.0 bits (94), Expect = 5e-05
 Identities = 22/106 (20%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTP 59
            I E V ++    G G DV  +  G    +  A       G++ + G        VP   
Sbjct: 185 AIVERVRELTG--GAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQT 242

Query: 60  AAAREVDVVG-VFR----YKNTWPLCLEFLRSGKIDIKPLVTHRFG 100
              + +D++  V R            ++ +  G++D+  L+TH F 
Sbjct: 243 WNWKGIDLINAVERDPRIGLEGMREAVKLIADGRLDLGSLLTHEFP 288

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 312

>gnl|CDD|178341 PLN02740, PLN02740, Alcohol dehydrogenase-like

 Score = 39.8 bits (93), Expect = 7e-05
 Identities = 29/102 (28%), Positives = 47/102 (46%), Gaps = 6/102 (5%)

Query: 7   EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAA---A 62
           E+I +  G G+D SF+CAG  + +  A  +T  G G   L+G+      +PL P      
Sbjct: 259 ERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDG 318

Query: 63  REV--DVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFS 102
           R +   V G F+ K+  P   +    G +++   +TH   F 
Sbjct: 319 RSITGSVFGDFKGKSQLPNLAKQCMQGVVNLDGFITHELPFE 360

Length = 381

>gnl|CDD|176259 cd08299, alcohol_DH_class_I_II_IV, class I, II, IV alcohol dehydrogenases

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 27/104 (25%), Positives = 49/104 (47%), Gaps = 8/104 (7%)

Query: 7   EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVC-LVGMGHHEMTVPLTPA---AA 62
           E + +    G+D SF+  G   TM  AL++   G  V  +VG+      + + P      
Sbjct: 251 EVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTG 310

Query: 63  REVD--VVGVFRYKNTWP-LCLEFLRSGKIDIKPLVTHRFGFSQ 103
           R     V G ++ K++ P L  +++ + K ++ PL+TH   F +
Sbjct: 311 RTWKGAVFGGWKSKDSVPKLVADYM-AKKFNLDPLITHTLPFEK 353

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48) , then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 373

>gnl|CDD|180054 PRK05396, tdh, L-threonine 3-dehydrogenase; Validated

 Score = 39.4 bits (93), Expect = 8e-05
 Identities = 23/107 (21%), Positives = 49/107 (45%), Gaps = 5/107 (4%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ + + ++   M  G DV  + +G        L     GG++ ++G+   +M +     
Sbjct: 219 DLRDVMAELG--MTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKV 276

Query: 61  AAREVDVVGVFRYK--NTWPLCLEFLRSGKIDIKPLVTHRFGFSQKE 105
             + + + G++  +   TW      L+SG +D+ P++THRF     +
Sbjct: 277 IFKGLTIKGIYGREMFETWYKMSALLQSG-LDLSPIITHRFPIDDFQ 322

Length = 341

>gnl|CDD|176202 cd08240, 6_hydroxyhexanoate_dh_like, 6-hydroxyhexanoate dehydrogenase

 Score = 38.4 bits (90), Expect = 2e-04
 Identities = 22/69 (31%), Positives = 33/69 (47%)

Query: 3   AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA 62
            +  ++I KA G G+D   D    + T S A      GGK+ LVG+   E T+PL     
Sbjct: 230 PDAAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPL 289

Query: 63  REVDVVGVF 71
           R + + G +
Sbjct: 290 RALTIQGSY 298

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains, at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 350

>gnl|CDD|176218 cd08256, Zn_ADH2, Alcohol dehydrogenases of the MDR family

 Score = 38.5 bits (90), Expect = 2e-04
 Identities = 23/100 (23%), Positives = 48/100 (48%), Gaps = 3/100 (3%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ E+++++    G G D+  +  G    +   L+  R  G+     +    +TV  +  
Sbjct: 230 DVVEKIKELTG--GYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSII 287

Query: 61  AAR-EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
             R E+DV+G       +P+ ++ + SG++    +VTH+F
Sbjct: 288 GDRKELDVLGSHLGPYCYPIAIDLIASGRLPTDGIVTHQF 327

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 350

>gnl|CDD|176193 cd08231, MDR_TM0436_like, Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 29/98 (29%), Positives = 38/98 (38%), Gaps = 11/98 (11%)

Query: 14  GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA--REVDVVGVF 71
           G G DV  + +G    +   L   R GG   LVG      TVPL P     + + ++GV 
Sbjct: 247 GRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVH 306

Query: 72  RYKNTWPLCL----EFLR--SGKIDIKPLVTHRFGFSQ 103
            Y    P  L     FL     +     LVTHR+    
Sbjct: 307 NYD---PSHLYRAVRFLERTQDRFPFAELVTHRYPLED 341

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. Length = 361

>gnl|CDD|132245 TIGR03201, dearomat_had, 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

 Score = 36.8 bits (85), Expect = 7e-04
 Identities = 28/106 (26%), Positives = 44/106 (41%), Gaps = 13/106 (12%)

Query: 1   DIAEEVEKIDKAMG---TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL 57
           ++ + ++   KA G   TG  + F+C+G      +ALS    GG + +VG    +    L
Sbjct: 224 EVKKLIKAFAKARGLRSTGWKI-FECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRL 282

Query: 58  TPAAAREVDVVGVF-----RYKNTWPLCLEFLRSGKIDIKPLVTHR 98
           +   A     +G +     RY     L L     GKI + P V  R
Sbjct: 283 SNLMAFHARALGNWGCPPDRYPAALDLVL----DGKIQLGPFVERR 324

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA. Length = 349

>gnl|CDD|176243 cd08283, FDH_like_1, Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

 Score = 36.7 bits (86), Expect = 7e-04
 Identities = 29/117 (24%), Positives = 41/117 (35%), Gaps = 31/117 (26%)

Query: 14  GTGIDVSFDCAGFN-------KTMST--------------ALSATRAGGKVCLVG--MGH 50
           G G DV  D  G         K                  A+ A R GG V ++G   G 
Sbjct: 252 GRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGT 311

Query: 51  HEMTVPLTPAAAREVDVVG----VFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                P+  A  + + +      V RY    P  LE + SG++D   ++THR     
Sbjct: 312 VN-KFPIGAAMNKGLTLRMGQTHVQRY---LPRLLELIESGELDPSFIITHRLPLED 364

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Length = 386

>gnl|CDD|176260 cd08300, alcohol_DH_class_III, class III alcohol dehydrogenases

 Score = 36.1 bits (84), Expect = 0.001
 Identities = 25/94 (26%), Positives = 39/94 (41%), Gaps = 6/94 (6%)

Query: 16  GIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGM---GHHEMTVPLTPAAAREV--DVVG 69
           G+D +F+C G  K M  AL A   G G   ++G+   G    T P      R       G
Sbjct: 256 GVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLVTGRVWKGTAFG 315

Query: 70  VFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            ++ ++  P  +E    GKI +   +TH     +
Sbjct: 316 GWKSRSQVPKLVEDYMKGKIKVDEFITHTMPLDE 349

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H) binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. Length = 368

>gnl|CDD|176220 cd08259, Zn_ADH5, Alcohol dehydrogenases of the MDR family

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 22/105 (20%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTP 59
             +E+V+K+      G DV  +  G + T+  +L +   GG++ L+G +      +    
Sbjct: 216 KFSEDVKKL-----GGADVVIELVG-SPTIEESLRSLNKGGRLVLIGNVTPDPAPLRPGL 269

Query: 60  AAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              +E+ ++G     K      L+ ++ GK  IKP++        
Sbjct: 270 LILKEIRIIGSISATKADVEEALKLVKEGK--IKPVIDRVVSLED 312

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine (His-51), the ribose of NAD, a serine (Ser-48), then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 332

>gnl|CDD|188504 TIGR03989, Rxyl_3153, oxidoreductase, Rxyl_3153 family

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 25/78 (32%), Positives = 38/78 (48%), Gaps = 7/78 (8%)

Query: 33  ALSATRAGGKVCLVGMGHHE---MTVPLTPAAAREVDVVG-VFRYKNT---WPLCLEFLR 85
           ALSATR GG+V + G+G      + V L      + ++ G +F   N     P  LE  R
Sbjct: 272 ALSATRKGGRVVVTGLGPMADVDVKVNLFELTLLQKELQGTLFGGANPRADIPRLLELYR 331

Query: 86  SGKIDIKPLVTHRFGFSQ 103
           +GK+ +  L+T  +   Q
Sbjct: 332 AGKLKLDELITRTYTLDQ 349

This model describes a clade within the family pfam00107 of zinc-binding dehydrogenases. The family pfam00107 contains class III alcohol dehydrogenases, including enzymes designated S-(hydroxymethyl)glutathione dehydrogenase and NAD/mycothiol-dependent formaldehyde dehydrogenase. Members of the current family occur only in species that contain the very small protein mycofactocin (TIGR03969), a possible cofactor precursor, and radical SAM protein TIGR03962. We name this family for Rxyl_3153, where the lone member of the family co-clusters with these markers in Rubrobacter xylanophilus [Unknown function, Enzymes of unknown specificity]. Length = 369

>gnl|CDD|222256 pfam13602, ADH_zinc_N_2, Zinc-binding dehydrogenase

 Score = 34.3 bits (79), Expect = 0.003
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 5/93 (5%)

Query: 14  GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFR 72
           G G+DV  D  G    +   L+    G  V + G                R V +  V  
Sbjct: 20  GEGVDVVLDTVGGETLLRALLALKPGGRLVSIGGPDLLLSVAAKAGGRGVRGVFLFPVSP 79

Query: 73  YKNTWPL--CLEFLRSGKIDIKPLVTHRFGFSQ 103
            +    L    E + +GK  ++P++   F   +
Sbjct: 80  GEAGADLAELAELVEAGK--LRPVIDRVFPLEE 110

Length = 129

>gnl|CDD|176223 cd08262, Zn_ADH8, Alcohol dehydrogenases of the MDR family

 Score = 34.6 bits (80), Expect = 0.004
 Identities = 22/86 (25%), Positives = 39/86 (45%), Gaps = 5/86 (5%)

Query: 18  DVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA--REVDVVGVFRY-K 74
            V F+C G    +   +     GG++ +VG+     +  + PA A  +E+ +     Y  
Sbjct: 235 AVIFECVGAPGLIQQIIEGAPPGGRIVVVGV--CMESDNIEPALAIRKELTLQFSLGYTP 292

Query: 75  NTWPLCLEFLRSGKIDIKPLVTHRFG 100
             +   L+ L  GK+D+ P+VT   G
Sbjct: 293 EEFADALDALAEGKVDVAPMVTGTVG 318

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Active site zinc has a catalytic role, while structural zinc aids in stability. ADH-like proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc atoms per subunit. The active site zinc is coordinated by a histidine, two cysteines, and a water molecule. The second zinc seems to play a structural role, affects subunit interactions, and is typically coordinated by 4 cysteines. Length = 341

>gnl|CDD|176215 cd08253, zeta_crystallin, Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

 Score = 34.5 bits (80), Expect = 0.004
 Identities = 25/110 (22%), Positives = 45/110 (40%), Gaps = 12/110 (10%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+A+ +       G G+DV  +    N  ++  L     GG++ + G G    T+P+ P 
Sbjct: 200 DLADRILAATA--GQGVDVIIEVL-ANVNLAKDLDVLAPGGRIVVYGSGGLRGTIPINPL 256

Query: 61  AAREVDVVGVFRYKNT---WPLCLE----FLRSGKIDIKPLVTHRFGFSQ 103
            A+E  + GV  Y  T        E     L  G   ++P++   +   +
Sbjct: 257 MAKEASIRGVLLYTATPEERAAAAEAIAAGLADGA--LRPVIAREYPLEE 304

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit, a catalytic zinc at the active site, and a structural zinc in a lobe of the catalytic domain. NAD(H)-binding occurs in the cleft between the catalytic and coenzyme-binding domains at the active site, and coenzyme binding induces a conformational closing of this cleft. Coenzyme binding typically precedes and contributes to substrate binding. In human ADH catalysis, the zinc ion helps coordinate the alcohol, followed by deprotonation of a histidine, the ribose of NAD, a serine, then the alcohol, which allows the transfer of a hydride to NAD+, creating NADH and a zinc-bound aldehyde or ketone. In yeast and some bacteria, the active site zinc binds an aldehyde, polarizing it, and leading to the reverse reaction. Length = 325

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
COG1062	366	AdhC Zn-dependent alcohol dehydrogenases, class II	99.78
KOG0024	354	consensus Sorbitol dehydrogenase [Secondary metabo	99.75
TIGR01202	308	bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyl	99.7
COG1063	350	Tdh Threonine dehydrogenase and related Zn-depende	99.69
TIGR03366	280	HpnZ_proposed putative phosphonate catabolism asso	99.69
KOG0022	375	consensus Alcohol dehydrogenase, class III [Second	99.68
cd08281	371	liver_ADH_like1 Zinc-dependent alcohol dehydrogena	99.67
PF00107	130	ADH_zinc_N: Zinc-binding dehydrogenase; InterPro:	99.66
TIGR03451	358	mycoS_dep_FDH mycothiol-dependent formaldehyde deh	99.66
PLN02827	378	Alcohol dehydrogenase-like	99.64
PRK09880	343	L-idonate 5-dehydrogenase; Provisional	99.64
TIGR03201	349	dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-Co	99.63
cd08238	410	sorbose_phosphate_red L-sorbose-1-phosphate reduct	99.62
cd08233	351	butanediol_DH_like (2R,3R)-2,3-butanediol dehydrog	99.61
COG1064	339	AdhP Zn-dependent alcohol dehydrogenases [General	99.6
PLN02740	381	Alcohol dehydrogenase-like	99.6
cd08239	339	THR_DH_like L-threonine dehydrogenase (TDH)-like.	99.6
PRK10309	347	galactitol-1-phosphate dehydrogenase; Provisional	99.6
COG0604	326	Qor NADPH:quinone reductase and related Zn-depende	99.55
cd08237	341	ribitol-5-phosphate_DH ribitol-5-phosphate dehydro	99.55
PLN02178	375	cinnamyl-alcohol dehydrogenase	99.54
TIGR02819	393	fdhA_non_GSH formaldehyde dehydrogenase, glutathio	99.53
cd08301	369	alcohol_DH_plants Plant alcohol dehydrogenase. NAD	99.53
TIGR02818	368	adh_III_F_hyde S-(hydroxymethyl)glutathione dehydr	99.51
cd08277	365	liver_alcohol_DH_like Liver alcohol dehydrogenase.	99.51
cd08300	368	alcohol_DH_class_III class III alcohol dehydrogena	99.51
PLN02586	360	probable cinnamyl alcohol dehydrogenase	99.49
PLN02514	357	cinnamyl-alcohol dehydrogenase	99.48
KOG1197	336	consensus Predicted quinone oxidoreductase [Energy	99.48
PLN03154	348	putative allyl alcohol dehydrogenase; Provisional	99.47
cd08230	355	glucose_DH Glucose dehydrogenase. Glucose dehydrog	99.47
cd08231	361	MDR_TM0436_like Hypothetical enzyme TM0436 resembl	99.39
cd08291	324	ETR_like_1 2-enoyl thioester reductase (ETR) like	99.37
KOG0023	360	consensus Alcohol dehydrogenase, class V [Secondar	99.34
TIGR02822	329	adh_fam_2 zinc-binding alcohol dehydrogenase famil	99.28
cd08285	351	NADP_ADH NADP(H)-dependent alcohol dehydrogenases.	99.27
cd08286	345	FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-lik	99.26
cd05279	365	Zn_ADH1 Liver alcohol dehydrogenase and related zi	99.26
cd08256	350	Zn_ADH2 Alcohol dehydrogenases of the MDR family.	99.26
cd08265	384	Zn_ADH3 Alcohol dehydrogenases of the MDR family.	99.25
PLN02702	364	L-idonate 5-dehydrogenase	99.24
cd08287	345	FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-lik	99.24
cd08295	338	double_bond_reductase_like Arabidopsis alkenal dou	99.23
PRK10083	339	putative oxidoreductase; Provisional	99.23
cd05285	343	sorbitol_DH Sorbitol dehydrogenase. Sorbitol and a	99.21
cd08284	344	FDH_like_2 Glutathione-dependent formaldehyde dehy	99.21
PRK05396	341	tdh L-threonine 3-dehydrogenase; Validated	99.2
TIGR02825	325	B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15	99.2
COG2130	340	Putative NADP-dependent oxidoreductases [General f	99.2
cd08246	393	crotonyl_coA_red crotonyl-CoA reductase. Crotonyl-	99.19
cd08242	319	MDR_like Medium chain dehydrogenases/reductase (MD	99.18
TIGR00692	340	tdh L-threonine 3-dehydrogenase. E. coli His-90 mo	99.17
cd08258	306	Zn_ADH4 Alcohol dehydrogenases of the MDR family.	99.17
cd08283	386	FDH_like_1 Glutathione-dependent formaldehyde dehy	99.17
cd08278	365	benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Be	99.16
cd08240	350	6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehy	99.14
cd08262	341	Zn_ADH8 Alcohol dehydrogenases of the MDR family.	99.14
PF13602	127	ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQ	99.13
cd08260	345	Zn_ADH6 Alcohol dehydrogenases of the MDR family.	99.12
cd08282	375	PFDH_like Pseudomonas putida aldehyde-dismutating	99.11
cd08294	329	leukotriene_B4_DH_like 13-PGR is a bifunctional en	99.11
cd05281	341	TDH Threonine dehydrogenase. L-threonine dehydroge	99.1
cd08269	312	Zn_ADH9 Alcohol dehydrogenases of the MDR family.	99.1
cd08296	333	CAD_like Cinnamyl alcohol dehydrogenases (CAD). Ci	99.1
cd08292	324	ETR_like_2 2-enoyl thioester reductase (ETR) like	99.1
cd08274	350	MDR9 Medium chain dehydrogenases/reductase (MDR)/z	99.1
TIGR01751	398	crot-CoA-red crotonyl-CoA reductase. The enzyme mo	99.09
cd08263	367	Zn_ADH10 Alcohol dehydrogenases of the MDR family.	99.09
cd08261	337	Zn_ADH7 Alcohol dehydrogenases of the MDR family.	99.07
cd08235	343	iditol_2_DH_like L-iditol 2-dehydrogenase. Putativ	99.07
cd08232	339	idonate-5-DH L-idonate 5-dehydrogenase. L-idonate	99.06
cd08279	363	Zn_ADH_class_III Class III alcohol dehydrogenase.	99.05
cd08299	373	alcohol_DH_class_I_II_IV class I, II, IV alcohol d	99.05
cd05283	337	CAD1 Cinnamyl alcohol dehydrogenases (CAD). Cinnam	99.05
cd05284	340	arabinose_DH_like D-arabinose dehydrogenase. This	99.05
cd05278	347	FDH_like Formaldehyde dehydrogenases. Formaldehyde	99.01
PRK13771	334	putative alcohol dehydrogenase; Provisional	98.99
KOG1198	347	consensus Zinc-binding oxidoreductase [Energy prod	98.99
cd08254	338	hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carbo	98.97
cd08236	343	sugar_DH NAD(P)-dependent sugar dehydrogenases. Th	98.95
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	98.95
cd08297	341	CAD3 Cinnamyl alcohol dehydrogenases (CAD). These	98.94
cd05282	323	ETR_like 2-enoyl thioester reductase-like. 2-enoyl	98.93
cd08276	336	MDR7 Medium chain dehydrogenases/reductase (MDR)/z	98.91
cd08234	334	threonine_DH_like L-threonine dehydrogenase. L-thr	98.91
cd08293	345	PTGR2 Prostaglandin reductase. Prostaglandins and	98.9
cd08264	325	Zn_ADH_like2 Alcohol dehydrogenases of the MDR fam	98.9
cd08244	324	MDR_enoyl_red Possible enoyl reductase. Member ide	98.88
cd05288	329	PGDH Prostaglandin dehydrogenases. Prostaglandins	98.85
PRK09422	338	ethanol-active dehydrogenase/acetaldehyde-active r	98.85
cd08266	342	Zn_ADH_like1 Alcohol dehydrogenases of the MDR fam	98.82
cd08290	341	ETR 2-enoyl thioester reductase (ETR). 2-enoyl thi	98.78
PRK10754	327	quinone oxidoreductase, NADPH-dependent; Provision	98.76
KOG1196	343	consensus Predicted NAD-dependent oxidoreductase [	98.76
cd08255	277	2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_	98.75
KOG0025	354	consensus Zn2+-binding dehydrogenase (nuclear rece	98.75
cd08243	320	quinone_oxidoreductase_like_1 Quinone oxidoreducta	98.73
PTZ00354	334	alcohol dehydrogenase; Provisional	98.73
cd08270	305	MDR4 Medium chain dehydrogenases/reductase (MDR)/z	98.68
cd08259	332	Zn_ADH5 Alcohol dehydrogenases of the MDR family.	98.65
TIGR02823	323	oxido_YhdH putative quinone oxidoreductase, YhdH/Y	98.64
cd05276	323	p53_inducible_oxidoreductase PIG3 p53-inducible qu	98.63
PRK09424	509	pntA NAD(P) transhydrogenase subunit alpha; Provis	98.61
cd08241	323	QOR1 Quinone oxidoreductase (QOR). QOR catalyzes t	98.61
cd08250	329	Mgc45594_like Mgc45594 gene product and other MDR	98.6
cd08252	336	AL_MDR Arginate lyase and other MDR family members	98.57
cd08253	325	zeta_crystallin Zeta-crystallin with NADP-dependen	98.56
cd08289	326	MDR_yhfp_like Yhfp putative quinone oxidoreductase	98.56
cd05286	320	QOR2 Quinone oxidoreductase (QOR). Quinone oxidore	98.55
cd08272	326	MDR6 Medium chain dehydrogenases/reductase (MDR)/z	98.54
cd05280	325	MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone	98.53
cd08298	329	CAD2 Cinnamyl alcohol dehydrogenases (CAD). These	98.5
cd08275	337	MDR3 Medium chain dehydrogenases/reductase (MDR)/z	98.5
TIGR02824	325	quinone_pig3 putative NAD(P)H quinone oxidoreducta	98.47
cd08245	330	CAD Cinnamyl alcohol dehydrogenases (CAD) and rela	98.43
cd08249	339	enoyl_reductase_like enoyl_reductase_like. Member	98.41
cd05188	271	MDR Medium chain reductase/dehydrogenase (MDR)/zin	98.38
cd05195	293	enoyl_red enoyl reductase of polyketide synthase.	98.37
cd05289	309	MDR_like_2 alcohol dehydrogenase and quinone reduc	98.37
TIGR02817	336	adh_fam_1 zinc-binding alcohol dehydrogenase famil	98.36
smart00829	288	PKS_ER Enoylreductase. Enoylreductase in Polyketid	98.28
cd08251	303	polyketide_synthase polyketide synthase. Polyketid	98.25
cd08273	331	MDR8 Medium chain dehydrogenases/reductase (MDR)/z	98.19
cd08268	328	MDR2 Medium chain dehydrogenases/reductase (MDR)/z	98.18
cd08271	325	MDR5 Medium chain dehydrogenases/reductase (MDR)/z	98.16
cd08247	352	AST1_like AST1 is a cytoplasmic protein associated	98.11
cd08288	324	MDR_yhdh Yhdh putative quinone oxidoreductases. Yh	98.11
cd08267	319	MDR1 Medium chain dehydrogenases/reductase (MDR)/z	98.05
cd08248	350	RTN4I1 Human Reticulon 4 Interacting Protein 1. Hu	97.94
KOG1202	2376	consensus Animal-type fatty acid synthase and rela	97.78
PRK11873	272	arsM arsenite S-adenosylmethyltransferase; Reviewe	96.93
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	94.5
smart00846	149	Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase,	94.45
PF00044	151	Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase,	94.17
TIGR00438	188	rrmJ cell division protein FtsJ.	94.02
TIGR01532	325	E4PD_g-proteo D-erythrose-4-phosphate dehydrogenas	93.72
TIGR00561	511	pntA NAD(P) transhydrogenase, alpha subunit. In so	92.63
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	92.03
PLN02358	338	glyceraldehyde-3-phosphate dehydrogenase	92.02
PTZ00434	361	cytosolic glyceraldehyde 3-phosphate dehydrogenase	90.83
PF04019	121	DUF359: Protein of unknown function (DUF359); Inte	90.75
PRK15425	331	gapA glyceraldehyde-3-phosphate dehydrogenase A; P	90.59
TIGR01534	327	GAPDH-I glyceraldehyde-3-phosphate dehydrogenase,	89.94
PLN03096	395	glyceraldehyde-3-phosphate dehydrogenase A; Provis	89.88
PLN02494	477	adenosylhomocysteinase	89.73
PRK08306	296	dipicolinate synthase subunit A; Reviewed	89.58
COG4122	219	Predicted O-methyltransferase [General function pr	89.44
PRK07729	343	glyceraldehyde-3-phosphate dehydrogenase; Validate	89.2
PRK13535	336	erythrose 4-phosphate dehydrogenase; Provisional	89.17
PRK08955	334	glyceraldehyde-3-phosphate dehydrogenase; Validate	89.06
PRK07403	337	glyceraldehyde-3-phosphate dehydrogenase; Reviewed	88.78
PTZ00023	337	glyceraldehyde-3-phosphate dehydrogenase; Provisio	88.67
PF03447	117	NAD_binding_3: Homoserine dehydrogenase, NAD bindi	87.88
PLN02237	442	glyceraldehyde-3-phosphate dehydrogenase B	87.63
PRK00536	262	speE spermidine synthase; Provisional	87.36
COG0057	335	GapA Glyceraldehyde-3-phosphate dehydrogenase/eryt	87.05
PRK13942	212	protein-L-isoaspartate O-methyltransferase; Provis	86.47
PRK00377	198	cbiT cobalt-precorrin-6Y C(15)-methyltransferase;	86.26
PF01113	124	DapB_N: Dihydrodipicolinate reductase, N-terminus;	85.46
PRK13943	322	protein-L-isoaspartate O-methyltransferase; Provis	85.26
PRK01160	178	hypothetical protein; Provisional	84.21
PRK13944	205	protein-L-isoaspartate O-methyltransferase; Provis	84.13
PLN02272	421	glyceraldehyde-3-phosphate dehydrogenase	84.09
TIGR02469	124	CbiT precorrin-6Y C5,15-methyltransferase (decarbo	83.81
PF06080	204	DUF938: Protein of unknown function (DUF938); Inte	83.15
PTZ00353	342	glycosomal glyceraldehyde-3-phosphate dehydrogenas	83.03
COG1092	393	Predicted SAM-dependent methyltransferases [Genera	82.04
PRK11188	209	rrmJ 23S rRNA methyltransferase J; Provisional	81.92
PRK14967	223	putative methyltransferase; Provisional	81.55
PTZ00075	476	Adenosylhomocysteinase; Provisional	81.52
PF01188	67	MR_MLE: Mandelate racemase / muconate lactonizing	81.47
TIGR00080	215	pimt protein-L-isoaspartate(D-aspartate) O-methylt	81.22
KOG4300	252	consensus Predicted methyltransferase [General fun	81.15
COG1909	167	Uncharacterized protein conserved in archaea [Func	81.07
COG2519	256	GCD14 tRNA(1-methyladenosine) methyltransferase an	80.58
COG2518	209	Pcm Protein-L-isoaspartate carboxylmethyltransfera	80.34

>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]

Probab=99.78  E-value=5.5e-19  Score=114.81  Aligned_cols=102  Identities=25%  Similarity=0.376  Sum_probs=89.3

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~   78 (105)
                      ++.+.++++|++|+|++|||+|+..++.++++++.++|+.+++|++.....++++.+ +..+.+++|++..    +.+++
T Consensus       242 ~vv~~i~~~T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~v~iGv~~~~~~i~~~~~~lv~gr~~~Gs~~G~~~p~~diP  321 (366)
T COG1062         242 DVVEAIVELTDGGADYAFECVGNVEVMRQALEATHRGGTSVIIGVAGAGQEISTRPFQLVTGRVWKGSAFGGARPRSDIP  321 (366)
T ss_pred             hHHHHHHHhcCCCCCEEEEccCCHHHHHHHHHHHhcCCeEEEEecCCCCceeecChHHeeccceEEEEeecCCccccchh
Confidence            578899999988999999999999999999999999999999999775555555443 3345889999875    78999


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQKE  105 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~~  105 (105)
                      ++++++.+|+++++++|+++|||+|+|
T Consensus       322 ~lv~~y~~Gkl~~d~lvt~~~~Le~IN  348 (366)
T COG1062         322 RLVDLYMAGKLPLDRLVTHTIPLEDIN  348 (366)
T ss_pred             HHHHHHHcCCCchhHHhhccccHHHHH
Confidence            999999999999999999999999875

>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.75  E-value=1.5e-17  Score=107.57  Aligned_cols=102  Identities=47%  Similarity=0.864  Sum_probs=91.7

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +++.+.++...+ ..+|+.|||+|....++.++..++.+|+++++|.-....+|++.....+++++.|++.+ ..+|+.+
T Consensus       228 ~~~~~~v~~~~g~~~~d~~~dCsG~~~~~~aai~a~r~gGt~vlvg~g~~~~~fpi~~v~~kE~~~~g~fry~~~~y~~a  307 (354)
T KOG0024|consen  228 QELAELVEKALGKKQPDVTFDCSGAEVTIRAAIKATRSGGTVVLVGMGAEEIQFPIIDVALKEVDLRGSFRYCNGDYPTA  307 (354)
T ss_pred             HHHHHHHHhhccccCCCeEEEccCchHHHHHHHHHhccCCEEEEeccCCCccccChhhhhhheeeeeeeeeeccccHHHH
Confidence            455556665555 47999999999999999999999999999999987778899999999999999999999 7799999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|+++++++||++|+++++
T Consensus       308 i~li~sGki~~k~lIT~r~~~~~~  331 (354)
T KOG0024|consen  308 IELVSSGKIDVKPLITHRYKFDDA  331 (354)
T ss_pred             HHHHHcCCcCchhheecccccchH
Confidence            999999999999999999999875

>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase

Probab=99.70  E-value=5.4e-17  Score=106.10  Aligned_cols=91  Identities=19%  Similarity=0.293  Sum_probs=80.3

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      +.++|++|||+|++.+++.++++++++|+++.+|.+..+..+++..++.+++++.++..+ +++++++++++++|+++++
T Consensus       198 ~~g~Dvvid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l~~~g~i~~~  277 (308)
T TIGR01202       198 RRDYRAIYDASGDPSLIDTLVRRLAKGGEIVLAGFYTEPVNFDFVPAFMKEARLRIAAEWQPGDLHAVRELIESGALSLD  277 (308)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhhhcCcEEEEEeecCCCcccccchhhhcceEEEEecccchhHHHHHHHHHHcCCCChh
Confidence            357999999999987789999999999999999987655667777778899999988776 6789999999999999988


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                      ++++++|||+|+
T Consensus       278 ~~it~~~~l~~~  289 (308)
T TIGR01202       278 GLITHQRPASDA  289 (308)
T ss_pred             hccceeecHHHH
Confidence            899999999875

>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]

Probab=99.69  E-value=1.5e-16  Score=105.68  Aligned_cols=101  Identities=31%  Similarity=0.497  Sum_probs=88.4

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhcCeEEEEeec-c-CCCHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAREVDVVGVFR-Y-KNTWPL   79 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~-~-~~~~~~   79 (105)
                      +..+++++.++ .|+|++|||+|.+.++.+++++++++|+++++|.+.... .++...++.+++++.|++. . +.++++
T Consensus       225 ~~~~~~~~~t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~v~~vGv~~~~~~~~~~~~~~~kel~l~gs~~~~~~~~~~~  304 (350)
T COG1063         225 DAGAEILELTGGRGADVVIEAVGSPPALDQALEALRPGGTVVVVGVYGGEDIPLPAGLVVSKELTLRGSLRPSGREDFER  304 (350)
T ss_pred             cHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhcCCCEEEEEeccCCccCccCHHHHHhcccEEEeccCCCCcccHHH
Confidence            45567778884 599999999999999999999999999999999987655 5777788999999999976 3 679999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|+++++++++++++++|+
T Consensus       305 ~~~ll~~g~i~~~~lit~~~~~~~~  329 (350)
T COG1063         305 ALDLLASGKIDPEKLITHRLPLDDA  329 (350)
T ss_pred             HHHHHHcCCCChhHceEeeccHHHH
Confidence            9999999999999999999998763

>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase

Probab=99.69  E-value=1.5e-16  Score=102.78  Aligned_cols=99  Identities=20%  Similarity=0.371  Sum_probs=83.7

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      .+.+++.+ +.++|++||++|.+..+..++++++++|+++.+|...  .+.+++...++.+++++.|++.+ ..++++++
T Consensus       176 ~~~~~~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~i~~~~~~~~~~~i~g~~~~~~~~~~~~~  255 (280)
T TIGR03366       176 AERQGGLQNGRGVDVALEFSGATAAVRACLESLDVGGTAVLAGSVFPGGPVALDPEQVVRRWLTIRGVHNYEPRHLDQAV  255 (280)
T ss_pred             HHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEeccCCCCCceeeCHHHHHhCCcEEEecCCCCHHHHHHHH
Confidence            34566666 4689999999999888999999999999999999643  34567777888999999999876 67899999


Q ss_pred             HHHHc--CCCCCCCceeeeeeCCCC
Q 040104           82 EFLRS--GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~--g~i~~~~~i~~~~~l~~~  104 (105)
                      +++.+  ++++++++|+++|||+|+
T Consensus       256 ~~l~~~~~~~~~~~~it~~~~l~~~  280 (280)
T TIGR03366       256 RFLAANGQRFPFEELVGKPFPLADV  280 (280)
T ss_pred             HHHHhhCCCCCHHHHhhcccccccC
Confidence            99998  477778899999999985

This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.

>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.68  E-value=2e-16  Score=102.11  Aligned_cols=101  Identities=24%  Similarity=0.346  Sum_probs=87.8

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~   78 (105)
                      +.+.++|+|++|+|+.|||+|+..++.+++.++++| |+-+++|+......+.+.++ +.+++++.|+...    +.+++
T Consensus       251 i~evi~EmTdgGvDysfEc~G~~~~m~~al~s~h~GwG~sv~iGv~~~~~~i~~~p~~l~~GR~~~Gs~FGG~K~~~~iP  330 (375)
T KOG0022|consen  251 IQEVIIEMTDGGVDYSFECIGNVSTMRAALESCHKGWGKSVVIGVAAAGQEISTRPFQLVTGRTWKGSAFGGFKSKSDIP  330 (375)
T ss_pred             HHHHHHHHhcCCceEEEEecCCHHHHHHHHHHhhcCCCeEEEEEecCCCcccccchhhhccccEEEEEecccccchhhhh
Confidence            567899999999999999999999999999999999 99999999776555555544 4567788877654    78999


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQKE  105 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~~  105 (105)
                      .+++.+.++++.++++|||++||++++
T Consensus       331 ~lV~~y~~~~l~ld~~ITh~l~f~~In  357 (375)
T KOG0022|consen  331 KLVKDYMKKKLNLDEFITHELPFEEIN  357 (375)
T ss_pred             HHHHHHHhCccchhhhhhcccCHHHHH
Confidence            999999999999999999999999874

>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase)

Probab=99.67  E-value=4.7e-16  Score=103.83  Aligned_cols=102  Identities=27%  Similarity=0.484  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCC
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +++.+++++.+++++|++|||+|.+..+..++++++++|+++.+|....  ...++...++.+++++.|++..    +.+
T Consensus       246 ~~~~~~i~~~~~~g~d~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  325 (371)
T cd08281         246 PNAVEQVRELTGGGVDYAFEMAGSVPALETAYEITRRGGTTVTAGLPDPEARLSVPALSLVAEERTLKGSYMGSCVPRRD  325 (371)
T ss_pred             hhHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEccCCCCceeeecHHHHhhcCCEEEEEecCCCChHHH
Confidence            3566778888755899999999988779999999999999999997543  3456666778899999998764    467


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.++++++++|+++++++|+++|||+|+
T Consensus       326 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~  353 (371)
T cd08281         326 IPRYLALYLSGRLPVDKLLTHRLPLDEI  353 (371)
T ss_pred             HHHHHHHHHcCCCCchhheeeeecHHHH
Confidence            8999999999999988899999999985

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd

>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1

Probab=99.66  E-value=3e-16  Score=90.84  Aligned_cols=84  Identities=26%  Similarity=0.494  Sum_probs=75.2

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHH
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPL   79 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~   79 (105)
                      .++.+++++.++ .++|++|||+|++..++.++++++++|+++.+|.+. .+.+++...++++++++.|++.+ ++++++
T Consensus        44 ~~~~~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~vg~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  123 (130)
T PF00107_consen   44 DDFVEQIRELTGGRGVDVVIDCVGSGDTLQEAIKLLRPGGRIVVVGVYGGDPISFNLMNLMFKEITIRGSWGGSPEDFQE  123 (130)
T ss_dssp             SSHHHHHHHHTTTSSEEEEEESSSSHHHHHHHHHHEEEEEEEEEESSTSTSEEEEEHHHHHHTTEEEEEESSGGHHHHHH
T ss_pred             cccccccccccccccceEEEEecCcHHHHHHHHHHhccCCEEEEEEccCCCCCCCCHHHHHhCCcEEEEEccCCHHHHHH
Confidence            457889999995 499999999998888999999999999999999887 66778888999999999999998 699999


Q ss_pred             HHHHHHc
Q 040104           80 CLEFLRS   86 (105)
Q Consensus        80 ~~~~v~~   86 (105)
                      +++++++
T Consensus       124 ~~~~la~  130 (130)
T PF00107_consen  124 ALQLLAQ  130 (130)
T ss_dssp             HHHHHH-
T ss_pred             HHHHhcC
Confidence            9999874

1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....

>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase

Probab=99.66  E-value=6.2e-16  Score=102.80  Aligned_cols=101  Identities=26%  Similarity=0.446  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +..+.+++.++ .++|++|||+|++.++..++.+++++|+++.+|.....  ..+++..++.+++++.+++..    ...
T Consensus       232 ~~~~~i~~~~~~~g~d~vid~~g~~~~~~~~~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~  311 (358)
T TIGR03451       232 DPVEAIRALTGGFGADVVIDAVGRPETYKQAFYARDLAGTVVLVGVPTPDMTLELPLLDVFGRGGALKSSWYGDCLPERD  311 (358)
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCceeeccHHHHhhcCCEEEEeecCCCCcHHH
Confidence            45567777774 58999999999977799999999999999999986432  345665677889999988643    467


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|+++++++|+++|||+|+
T Consensus       312 ~~~~~~l~~~g~l~~~~~i~~~~~l~~~  339 (358)
T TIGR03451       312 FPMLVDLYLQGRLPLDAFVTERIGLDDV  339 (358)
T ss_pred             HHHHHHHHHcCCCCchheEEEEecHHHH
Confidence            8999999999999888899999999985

Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.

>PLN02827 Alcohol dehydrogenase-like

Probab=99.64  E-value=1.4e-15  Score=101.95  Aligned_cols=101  Identities=23%  Similarity=0.316  Sum_probs=83.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc----CCCH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY----KNTW   77 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~----~~~~   77 (105)
                      ++.+.+++.+++++|++||++|.+..+..++++++++ |+++.+|.+.....+.. ..++.+++++.|++..    ..++
T Consensus       251 ~~~~~v~~~~~~g~d~vid~~G~~~~~~~~l~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  330 (378)
T PLN02827        251 PIQQVIKRMTGGGADYSFECVGDTGIATTALQSCSDGWGLTVTLGVPKAKPEVSAHYGLFLSGRTLKGSLFGGWKPKSDL  330 (378)
T ss_pred             HHHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhccCCCEEEEECCcCCCccccccHHHHhcCceEEeeecCCCchhhhH
Confidence            4556777777558999999999987799999999999 99999998654334433 3467899999998764    3578


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .++++++++|+++++++|+++|||+|+
T Consensus       331 ~~~~~~~~~g~i~~~~~i~~~~~le~~  357 (378)
T PLN02827        331 PSLVDKYMNKEIMIDEFITHNLSFDEI  357 (378)
T ss_pred             HHHHHHHHcCCCChHHheEEEecHHHH
Confidence            999999999999877799999999975

>PRK09880 L-idonate 5-dehydrogenase; Provisional

Probab=99.64  E-value=1.1e-15  Score=101.11  Aligned_cols=90  Identities=29%  Similarity=0.552  Sum_probs=79.9

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPL   94 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~   94 (105)
                      +++|++|||+|++..+..++++++++|+++.+|.+....++++..++.+++++.|++.+..+++++++++++|++++.++
T Consensus       234 g~~D~vid~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~l~~~g~i~~~~~  313 (343)
T PRK09880        234 GYFDVSFEVSGHPSSINTCLEVTRAKGVMVQVGMGGAPPEFPMMTLIVKEISLKGSFRFTEEFNTAVSWLANGVINPLPL  313 (343)
T ss_pred             CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHHhCCcEEEEEeeccccHHHHHHHHHcCCCCchhh
Confidence            36999999999987799999999999999999986555667777788999999998877788999999999999988889


Q ss_pred             eeeeeeCCCC
Q 040104           95 VTHRFGFSQK  104 (105)
Q Consensus        95 i~~~~~l~~~  104 (105)
                      |+++|||+|+
T Consensus       314 i~~~~~l~~~  323 (343)
T PRK09880        314 LSAEYPFTDL  323 (343)
T ss_pred             eEEEEEHHHH
Confidence            9999999875

>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase

Probab=99.63  E-value=4e-15  Score=98.64  Aligned_cols=100  Identities=25%  Similarity=0.411  Sum_probs=84.0

Q ss_pred             HHHHHHHHHc-CCCCc----EEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCH
Q 040104            4 EEVEKIDKAM-GTGID----VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTW   77 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d----~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~   77 (105)
                      ++.+.+++.+ +.|+|    ++|||+|++.++..++++++++|+++.+|.+..+..+++..++.++.++.|++.+ ..++
T Consensus       224 ~~~~~~~~~t~~~g~d~~~d~v~d~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  303 (349)
T TIGR03201       224 EVKKLIKAFAKARGLRSTGWKIFECSGSKPGQESALSLLSHGGTLVVVGYTMAKTEYRLSNLMAFHARALGNWGCPPDRY  303 (349)
T ss_pred             HHHHHHHhhcccCCCCCCcCEEEECCCChHHHHHHHHHHhcCCeEEEECcCCCCcccCHHHHhhcccEEEEEecCCHHHH
Confidence            5667778888 46886    8999999988788999999999999999987655566666777788899998866 6789


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++|++++.++++ +|||+|+
T Consensus       304 ~~~~~~i~~g~i~~~~~i~-~~~l~~~  329 (349)
T TIGR03201       304 PAALDLVLDGKIQLGPFVE-RRPLDQI  329 (349)
T ss_pred             HHHHHHHHcCCCCcccceE-EecHHHH
Confidence            9999999999998877786 7999875

Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.

>cd08238 sorbose_phosphate_red L-sorbose-1-phosphate reductase

Probab=99.62  E-value=2.5e-15  Score=101.65  Aligned_cols=101  Identities=14%  Similarity=0.167  Sum_probs=84.1

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC-CC--CccccchhhhhcCeEEEEeecc-CCCHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG-HH--EMTVPLTPAAAREVDVVGVFRY-KNTWP   78 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~-~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~   78 (105)
                      ++.+.+++.+ +.++|++||++|++..+..++++++++|+++.++.. ..  +.++++..++.+++++.|++.. ..+++
T Consensus       244 ~~~~~v~~~t~g~g~D~vid~~g~~~~~~~a~~~l~~~G~~v~~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  323 (410)
T cd08238         244 DLHATLMELTGGQGFDDVFVFVPVPELVEEADTLLAPDGCLNFFAGPVDKNFSAPLNFYNVHYNNTHYVGTSGGNTDDMK  323 (410)
T ss_pred             cHHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhccCCeEEEEEccCCCCccccccHHHhhhcCcEEEEeCCCCHHHHH
Confidence            4556777777 458999999999888899999999999988877542 22  2456666788899999998876 67899


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++|++++.++|+++|||+|+
T Consensus       324 ~~~~li~~g~i~~~~~it~~~~l~~~  349 (410)
T cd08238         324 EAIDLMAAGKLNPARMVTHIGGLNAA  349 (410)
T ss_pred             HHHHHHHcCCCchhhcEEEEecHHHH
Confidence            99999999999988899999999875

L-sorbose-1-phosphate reductase, a member of the MDR family, catalyzes the NADPH-dependent conversion of l-sorbose 1-phosphate to d-glucitol 6-phosphate in the metabolism of L-sorbose to (also converts d-fructose 1-phosphate to d-mannitol 6-phosphate). The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the found

>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase

Probab=99.61  E-value=7.4e-15  Score=97.27  Aligned_cols=101  Identities=32%  Similarity=0.557  Sum_probs=86.5

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      ++.+.+++.++ +++|++||++|....+..++++++++|+++.+|....+.++++..+..+++++.+++.+ ..++++++
T Consensus       228 ~~~~~l~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  307 (351)
T cd08233         228 DVVAEVRKLTGGGGVDVSFDCAGVQATLDTAIDALRPRGTAVNVAIWEKPISFNPNDLVLKEKTLTGSICYTREDFEEVI  307 (351)
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCCEEEEEccCCCCCccCHHHHHhhCcEEEEEeccCcchHHHHH
Confidence            35567777774 57999999999876799999999999999999986655667777778899999999877 78999999


Q ss_pred             HHHHcCCCCCCCceeeeeeCCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++|+++++++++++|+|+|+
T Consensus       308 ~~~~~g~l~~~~~i~~~~~l~e~  330 (351)
T cd08233         308 DLLASGKIDAEPLITSRIPLEDI  330 (351)
T ss_pred             HHHHcCCCChHHheEEEecHHHH
Confidence            99999999888889999999874

(2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.

>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]

Probab=99.60  E-value=3.9e-15  Score=97.77  Aligned_cols=86  Identities=27%  Similarity=0.419  Sum_probs=76.4

Q ss_pred             CcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCC
Q 040104           17 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        17 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~   93 (105)
                      +|+++|+++ +.+++.++++|+++|+++++|.+. .+ ..++...+.+++++|.||... +.++++++++.++|++  ++
T Consensus       230 ~d~ii~tv~-~~~~~~~l~~l~~~G~~v~vG~~~~~~~~~~~~~~li~~~~~i~GS~~g~~~d~~e~l~f~~~g~I--kp  306 (339)
T COG1064         230 ADAIIDTVG-PATLEPSLKALRRGGTLVLVGLPGGGPIPLLPAFLLILKEISIVGSLVGTRADLEEALDFAAEGKI--KP  306 (339)
T ss_pred             CcEEEECCC-hhhHHHHHHHHhcCCEEEEECCCCCcccCCCCHHHhhhcCeEEEEEecCCHHHHHHHHHHHHhCCc--ee
Confidence            999999999 777999999999999999999984 43 447778889999999999998 9999999999999999  66


Q ss_pred             ceeeeeeCCCCC
Q 040104           94 LVTHRFGFSQKE  105 (105)
Q Consensus        94 ~i~~~~~l~~~~  105 (105)
                      .+.+++||+|++
T Consensus       307 ~i~e~~~l~~in  318 (339)
T COG1064         307 EILETIPLDEIN  318 (339)
T ss_pred             eEEeeECHHHHH
Confidence            675689999864

>PLN02740 Alcohol dehydrogenase-like

Probab=99.60  E-value=6.1e-15  Score=98.89  Aligned_cols=100  Identities=26%  Similarity=0.440  Sum_probs=80.6

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhh-hhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~----~~~~~   78 (105)
                      +.+.+++.+++++|++||++|++..+..++.+++++ |+++.+|.+..+..+++..+ +++++++.|++.+    ..+++
T Consensus       257 ~~~~v~~~~~~g~dvvid~~G~~~~~~~a~~~~~~g~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  336 (381)
T PLN02740        257 VHERIREMTGGGVDYSFECAGNVEVLREAFLSTHDGWGLTVLLGIHPTPKMLPLHPMELFDGRSITGSVFGDFKGKSQLP  336 (381)
T ss_pred             HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhhhcCCCEEEEEccCCCCceecccHHHHhcCCeEEEEecCCCCcHHHHH
Confidence            566777777558999999999987799999999997 99999998654333333333 3578899988764    34789


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++.+|+++++++|+++|||+|+
T Consensus       337 ~~~~~~~~g~i~~~~~it~~~~l~e~  362 (381)
T PLN02740        337 NLAKQCMQGVVNLDGFITHELPFEKI  362 (381)
T ss_pred             HHHHHHHcCCCChHHheeEEecHHHH
Confidence            99999999999888899999999985

>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like

Probab=99.60  E-value=7.5e-15  Score=96.80  Aligned_cols=98  Identities=32%  Similarity=0.593  Sum_probs=81.7

Q ss_pred             HHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            6 VEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         6 ~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      .+.+++.++ .++|++|||+|+...+..++++++++|+++.+|.... ..++. ..++.+++++.|++.. .++++++++
T Consensus       220 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  298 (339)
T cd08239         220 VQEIRELTSGAGADVAIECSGNTAARRLALEAVRPWGRLVLVGEGGE-LTIEVSNDLIRKQRTLIGSWYFSVPDMEECAE  298 (339)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcCCCC-cccCcHHHHHhCCCEEEEEecCCHHHHHHHHH
Confidence            455666774 5899999999998867899999999999999997543 23443 3467799999999887 678999999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++.+|+++++++++++|+|+|+
T Consensus       299 ~~~~g~i~~~~~i~~~~~l~~~  320 (339)
T cd08239         299 FLARHKLEVDRLVTHRFGLDQA  320 (339)
T ss_pred             HHHcCCCChhHeEEEEecHHHH
Confidence            9999999888899999999875

MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at

>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional

Probab=99.60  E-value=1e-14  Score=96.50  Aligned_cols=98  Identities=22%  Similarity=0.457  Sum_probs=79.8

Q ss_pred             HHHHHHc-CCCCc-EEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcccc---chhhhhcCeEEEEeecc------CC
Q 040104            7 EKIDKAM-GTGID-VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVP---LTPAAAREVDVVGVFRY------KN   75 (105)
Q Consensus         7 ~~~~~~~-~~g~d-~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~---~~~~~~~~~~i~~~~~~------~~   75 (105)
                      +++.+.+ +.++| ++|||+|++.++..++++++++|+++.+|....+..++   +..+..+++++.|++.+      +.
T Consensus       218 ~~~~~~~~~~~~d~~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  297 (347)
T PRK10309        218 PQIQSVLRELRFDQLILETAGVPQTVELAIEIAGPRAQLALVGTLHHDLHLTSATFGKILRKELTVIGSWMNYSSPWPGQ  297 (347)
T ss_pred             HHHHHHhcCCCCCeEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCcccChhhhhHHhhcCcEEEEEeccccCCcchh
Confidence            4456666 45888 99999999877999999999999999999765443333   23567789999998753      25


Q ss_pred             CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++++|+++++++|+++|||+|+
T Consensus       298 ~~~~~~~~~~~g~i~~~~~i~~~~~l~~~  326 (347)
T PRK10309        298 EWETASRLLTERKLSLEPLIAHRGSFESF  326 (347)
T ss_pred             HHHHHHHHHHcCCCCchhheEEEeeHHHH
Confidence            78999999999999888999999999985

>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]

Probab=99.55  E-value=5.2e-14  Score=92.87  Aligned_cols=98  Identities=23%  Similarity=0.463  Sum_probs=82.0

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-C----
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-K----   74 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~----   74 (105)
                      +++.++++++++ .++|+|+|++|+.. +..++.+|+++|+++.+|...+  ...++...+..+.+++.|.... .    
T Consensus       197 ~~~~~~v~~~t~g~gvDvv~D~vG~~~-~~~~l~~l~~~G~lv~ig~~~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  275 (326)
T COG0604         197 EDFVEQVRELTGGKGVDVVLDTVGGDT-FAASLAALAPGGRLVSIGALSGGPPVPLNLLPLLGKRLTLRGVTLGSRDPEA  275 (326)
T ss_pred             ccHHHHHHHHcCCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEecCCCCCccccCHHHHhhccEEEEEecceecchHH
Confidence            458899999995 59999999999987 9999999999999999998652  3445666667788888877665 4    


Q ss_pred             --CCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           75 --NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        75 --~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                        +.+.++.+++.+|++  ++.|+++|||+|
T Consensus       276 ~~~~~~~l~~~~~~g~l--~~~i~~~~~l~e  304 (326)
T COG0604         276 LAEALAELFDLLASGKL--KPVIDRVYPLAE  304 (326)
T ss_pred             HHHHHHHHHHHHHcCCC--cceeccEechhh
Confidence              467779999999999  778899999998

>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase

Probab=99.55  E-value=1.6e-14  Score=95.59  Aligned_cols=88  Identities=18%  Similarity=0.363  Sum_probs=74.8

Q ss_pred             CCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC---C
Q 040104           16 GIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG---K   88 (105)
Q Consensus        16 g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g---~   88 (105)
                      ++|++||++|+   +.++..++++++++|+++.+|.+..+..++...++.+++++.|+..+ ..+++++++++++|   +
T Consensus       222 g~d~viD~~G~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~~~~~~~~~  301 (341)
T cd08237         222 AVDHAFECVGGRGSQSAINQIIDYIRPQGTIGLMGVSEYPVPINTRMVLEKGLTLVGSSRSTREDFERAVELLSRNPEVA  301 (341)
T ss_pred             CCcEEEECCCCCccHHHHHHHHHhCcCCcEEEEEeecCCCcccCHHHHhhCceEEEEecccCHHHHHHHHHHHHhCCccc
Confidence            79999999994   45699999999999999999976555566766778899999998876 67899999999999   3


Q ss_pred             CCCCCceeeeeeCCC
Q 040104           89 IDIKPLVTHRFGFSQ  103 (105)
Q Consensus        89 i~~~~~i~~~~~l~~  103 (105)
                      .+++++|+++|||++
T Consensus       302 ~~l~~~i~~~~~l~~  316 (341)
T cd08237         302 EYLRKLVGGVFPVRS  316 (341)
T ss_pred             CChHHHhcccccccc
Confidence            356889999999964

NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (

>PLN02178 cinnamyl-alcohol dehydrogenase

Probab=99.54  E-value=3e-14  Score=95.52  Aligned_cols=93  Identities=20%  Similarity=0.253  Sum_probs=77.7

Q ss_pred             HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104            8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus         8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      .+++.++ ++|++|||+|++.++..++++++++|+++.+|.+..+..+++..++++++++.|++.+ ..+++++++++++
T Consensus       235 ~v~~~~~-~~D~vid~~G~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~  313 (375)
T PLN02178        235 KMKEAVG-TMDFIIDTVSAEHALLPLFSLLKVSGKLVALGLPEKPLDLPIFPLVLGRKMVGGSQIGGMKETQEMLEFCAK  313 (375)
T ss_pred             HHHHhhC-CCcEEEECCCcHHHHHHHHHhhcCCCEEEEEccCCCCCccCHHHHHhCCeEEEEeCccCHHHHHHHHHHHHh
Confidence            4455444 7999999999987799999999999999999986555667777788899999999876 5789999999999


Q ss_pred             CCCCCCCceeeeeeCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~  104 (105)
                      |+++  +.+ ++|||+|+
T Consensus       314 g~i~--~~i-~~~~l~~~  328 (375)
T PLN02178        314 HKIV--SDI-ELIKMSDI  328 (375)
T ss_pred             CCCc--ccE-EEEeHHHH
Confidence            9995  445 57999875

>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent

Probab=99.53  E-value=2.9e-14  Score=96.10  Aligned_cols=101  Identities=15%  Similarity=0.247  Sum_probs=75.6

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCCh--------------HHHHHHHHhhhcCCEEEEEcCCC-C-Cc-----------cc
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFN--------------KTMSTALSATRAGGKVCLVGMGH-H-EM-----------TV   55 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~~-~-~~-----------~~   55 (105)
                      +..+.+.+.+ ++++|++|||+|.+              .++++++++++++|+++.+|.+. + +.           ++
T Consensus       241 ~~~~~v~~~~~~~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~~~~i  320 (393)
T TIGR02819       241 TLPEQIEQILGEPEVDCAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLYVTEDPGAVDAAAKTGSLSI  320 (393)
T ss_pred             cHHHHHHHHcCCCCCcEEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeecCCccccccccccccccccc
Confidence            3456677777 45899999999986              36999999999999999999863 2 11           12


Q ss_pred             cchhhhhcCeEEEEeeccC-CCHHHHHHHHHcCCCCCCCcee-eeeeCCCC
Q 040104           56 PLTPAAAREVDVVGVFRYK-NTWPLCLEFLRSGKIDIKPLVT-HRFGFSQK  104 (105)
Q Consensus        56 ~~~~~~~~~~~i~~~~~~~-~~~~~~~~~v~~g~i~~~~~i~-~~~~l~~~  104 (105)
                      ....++.+++++.|+.... ..+.++++++++|+++++++++ ++|||+|+
T Consensus       321 ~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g~i~~~~~i~~~~~~l~~~  371 (393)
T TIGR02819       321 RFGLGWAKSHSFHTGQTPVMKYNRNLMQAILHDRVQIAKAVNVTVISLDDA  371 (393)
T ss_pred             chHHhhccCceEEeccCChhhhHHHHHHHHHcCCCCHHHceecceecHHHH
Confidence            2333456677777754442 3447899999999998888887 78999975

Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.

>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase

Probab=99.53  E-value=6.9e-14  Score=93.35  Aligned_cols=101  Identities=25%  Similarity=0.429  Sum_probs=80.0

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchh-hhhcCeEEEEeecc----CCCH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY----KNTW   77 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~   77 (105)
                      ++.+.+++.+++++|++||++|.+..+..++.+++++ |+++.+|....+..+++.. .+++++++.|++..    +.++
T Consensus       245 ~~~~~v~~~~~~~~d~vid~~G~~~~~~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  324 (369)
T cd08301         245 PVQEVIAEMTGGGVDYSFECTGNIDAMISAFECVHDGWGVTVLLGVPHKDAVFSTHPMNLLNGRTLKGTLFGGYKPKTDL  324 (369)
T ss_pred             hHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhhcCCCEEEEECcCCCCcccccCHHHHhcCCeEEEEecCCCChHHHH
Confidence            3556677777668999999999987789999999996 9999999865332333322 13478999998754    3578


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++.+|+++++++++++|||+|+
T Consensus       325 ~~~~~~~~~g~~~~~~~i~~~~~l~~~  351 (369)
T cd08301         325 PNLVEKYMKKELELEKFITHELPFSEI  351 (369)
T ss_pred             HHHHHHHHcCCCCcHHheeeeecHHHH
Confidence            999999999999888889999999875

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the

>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase

Probab=99.51  E-value=1.5e-13  Score=91.88  Aligned_cols=99  Identities=23%  Similarity=0.314  Sum_probs=76.6

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCCH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNTW   77 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~   77 (105)
                      +.+.+++.+++++|++|||+|++..+..++++++++ |+++.+|.+..  +..++...+. ++..+.+++..    +.++
T Consensus       244 ~~~~v~~~~~~g~d~vid~~G~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~  322 (368)
T TIGR02818       244 IQEVIVEITDGGVDYSFECIGNVNVMRAALECCHKGWGESIIIGVAGAGQEISTRPFQLV-TGRVWRGSAFGGVKGRTEL  322 (368)
T ss_pred             HHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCCeEEEEeccCCCCcccccHHHHh-ccceEEEeeccCCCcHHHH
Confidence            456677777558999999999887799999999996 99999997542  2233333333 34456776543    4578


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++|+++++++++++|||+|+
T Consensus       323 ~~~~~~~~~g~i~~~~~it~~~~l~~~  349 (368)
T TIGR02818       323 PGIVEQYMKGEIALDDFVTHTMPLEDI  349 (368)
T ss_pred             HHHHHHHHCCCCCchhheeEEecHHHH
Confidence            999999999999888899999999985

The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.

>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase

Probab=99.51  E-value=1.8e-13  Score=91.34  Aligned_cols=99  Identities=27%  Similarity=0.403  Sum_probs=79.7

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC-CccccchhhhhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      +.+.+++.+++++|++|||+|+...+..++++++++ |+++.+|...+ ..+++...+.. ++++.|++.+    +.+++
T Consensus       243 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~i~g~~~~~~~~~~~~~  321 (365)
T cd08277         243 VSEVIREMTGGGVDYSFECTGNADLMNEALESTKLGWGVSVVVGVPPGAELSIRPFQLIL-GRTWKGSFFGGFKSRSDVP  321 (365)
T ss_pred             HHHHHHHHhCCCCCEEEECCCChHHHHHHHHhcccCCCEEEEEcCCCccccccCHhHHhh-CCEEEeeecCCCChHHHHH
Confidence            355677777668999999999877789999999986 99999997642 33455544544 8899888765    35789


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++|+++++++++++|||+|+
T Consensus       322 ~~~~~~~~~~~~~~~~i~~~~~l~~~  347 (365)
T cd08277         322 KLVSKYMNKKFDLDELITHVLPFEEI  347 (365)
T ss_pred             HHHHHHHCCCcChhHheeeEEchhhH
Confidence            99999999999888999999999986

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i

>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases

Probab=99.51  E-value=1.6e-13  Score=91.62  Aligned_cols=100  Identities=21%  Similarity=0.312  Sum_probs=76.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      ++.+.+++.+++++|++||++|++..+..++++++++ |+++.+|.....  ..++...+. ++.++.++...    +.+
T Consensus       244 ~~~~~v~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~  322 (368)
T cd08300         244 PIQQVLVEMTDGGVDYTFECIGNVKVMRAALEACHKGWGTSVIIGVAAAGQEISTRPFQLV-TGRVWKGTAFGGWKSRSQ  322 (368)
T ss_pred             HHHHHHHHHhCCCCcEEEECCCChHHHHHHHHhhccCCCeEEEEccCCCCCccccCHHHHh-hcCeEEEEEecccCcHHH
Confidence            4667778888668999999999877799999999997 999999976422  222222222 34566665432    567


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|++++.++|+++|||+|+
T Consensus       323 ~~~~~~~~~~g~l~~~~~i~~~~~le~~  350 (368)
T cd08300         323 VPKLVEDYMKGKIKVDEFITHTMPLDEI  350 (368)
T ss_pred             HHHHHHHHHcCCCChhhceeeeEcHHHH
Confidence            8999999999999888899999999985

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim

>PLN02586 probable cinnamyl alcohol dehydrogenase

Probab=99.49  E-value=1.4e-13  Score=91.88  Aligned_cols=93  Identities=17%  Similarity=0.218  Sum_probs=76.1

Q ss_pred             HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104            8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus         8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      .+++.++ ++|++||++|++.++..++++++++|+++.+|....+..+++..++.++..+.|++.+ ..+++++++++++
T Consensus       240 ~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~vG~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~li~~  318 (360)
T PLN02586        240 KMKAAIG-TMDYIIDTVSAVHALGPLLGLLKVNGKLITLGLPEKPLELPIFPLVLGRKLVGGSDIGGIKETQEMLDFCAK  318 (360)
T ss_pred             HHHhhcC-CCCEEEECCCCHHHHHHHHHHhcCCcEEEEeCCCCCCCccCHHHHHhCCeEEEEcCcCCHHHHHHHHHHHHh
Confidence            3444444 6999999999877799999999999999999976555667777777888888888766 5689999999999


Q ss_pred             CCCCCCCceeeeeeCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~  104 (105)
                      |++++  .+ ++|||+|+
T Consensus       319 g~i~~--~~-~~~~l~~~  333 (360)
T PLN02586        319 HNITA--DI-ELIRMDEI  333 (360)
T ss_pred             CCCCC--cE-EEEeHHHH
Confidence            99954  45 48999985

>PLN02514 cinnamyl-alcohol dehydrogenase

Probab=99.48  E-value=2e-13  Score=90.91  Aligned_cols=92  Identities=15%  Similarity=0.175  Sum_probs=76.4

Q ss_pred             HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC
Q 040104            9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG   87 (105)
Q Consensus         9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g   87 (105)
                      +++.+ .++|++|||+|....+..++++++++|+++.+|....+.+++...++.+++++.|++.. ..++.++++++++|
T Consensus       238 ~~~~~-~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~g  316 (357)
T PLN02514        238 MQEAA-DSLDYIIDTVPVFHPLEPYLSLLKLDGKLILMGVINTPLQFVTPMLMLGRKVITGSFIGSMKETEEMLEFCKEK  316 (357)
T ss_pred             HHHhc-CCCcEEEECCCchHHHHHHHHHhccCCEEEEECCCCCCCcccHHHHhhCCcEEEEEecCCHHHHHHHHHHHHhC
Confidence            34433 37999999999876799999999999999999986655567767778899999999877 56899999999999


Q ss_pred             CCCCCCceeeeeeCCCC
Q 040104           88 KIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        88 ~i~~~~~i~~~~~l~~~  104 (105)
                      ++  +++++ +|||+|+
T Consensus       317 ~l--~~~i~-~~~l~~~  330 (357)
T PLN02514        317 GL--TSMIE-VVKMDYV  330 (357)
T ss_pred             CC--cCcEE-EEcHHHH
Confidence            88  56675 8999985

>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]

Probab=99.48  E-value=5.2e-14  Score=89.00  Aligned_cols=100  Identities=21%  Similarity=0.396  Sum_probs=77.5

Q ss_pred             hhHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEE-----EeeccC
Q 040104            2 IAEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVV-----GVFRYK   74 (105)
Q Consensus         2 ~~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~-----~~~~~~   74 (105)
                      .+|+.++++++| |+|+|+++|.+|... +..++.+|++.|.+|.+|..++ ..++++..+.-+.+++.     |.....
T Consensus       200 ~eD~v~~V~kiTngKGVd~vyDsvG~dt-~~~sl~~Lk~~G~mVSfG~asgl~~p~~l~~ls~k~l~lvrpsl~gYi~g~  278 (336)
T KOG1197|consen  200 TEDYVDEVKKITNGKGVDAVYDSVGKDT-FAKSLAALKPMGKMVSFGNASGLIDPIPLNQLSPKALQLVRPSLLGYIDGE  278 (336)
T ss_pred             chhHHHHHHhccCCCCceeeeccccchh-hHHHHHHhccCceEEEeccccCCCCCeehhhcChhhhhhccHhhhcccCCH
Confidence            478999999999 789999999999987 9999999999999999998654 23455555544444433     222222


Q ss_pred             ----CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 ----NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ----~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          ....+++.++.+|++  +..|.|+|||+++
T Consensus       279 ~el~~~v~rl~alvnsg~l--k~~I~~~ypls~v  310 (336)
T KOG1197|consen  279 VELVSYVARLFALVNSGHL--KIHIDHVYPLSKV  310 (336)
T ss_pred             HHHHHHHHHHHHHhhcCcc--ceeeeeecchHHH
Confidence                245778899999999  6679999999875

>PLN03154 putative allyl alcohol dehydrogenase; Provisional

Probab=99.47  E-value=1.6e-13  Score=91.19  Aligned_cols=98  Identities=17%  Similarity=0.288  Sum_probs=77.0

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cc-----cccchhhhhcCeEEEEeecc----
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EM-----TVPLTPAAAREVDVVGVFRY----   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~-----~~~~~~~~~~~~~i~~~~~~----   73 (105)
                      ++.+.+++.+++|+|++|||+|+.. +..++++++++|+++.+|.... +.     .++...+..+++++.|++.+    
T Consensus       216 ~~~~~i~~~~~~gvD~v~d~vG~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~  294 (348)
T PLN03154        216 DLDAALKRYFPEGIDIYFDNVGGDM-LDAALLNMKIHGRIAVCGMVSLNSLSASQGIHNLYNLISKRIRMQGFLQSDYLH  294 (348)
T ss_pred             cHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHHhccCCEEEEECccccCCCCCCCCcccHHHHhhccceEEEEEHHHHHH
Confidence            4556677777678999999999864 9999999999999999997542 21     12445567899999988754    


Q ss_pred             --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                        .+.++++++++++|++  ++.++++|||+++
T Consensus       295 ~~~~~~~~~~~l~~~G~l--~~~~~~~~~L~~~  325 (348)
T PLN03154        295 LFPQFLENVSRYYKQGKI--VYIEDMSEGLESA  325 (348)
T ss_pred             HHHHHHHHHHHHHHCCCc--cCceecccCHHHH
Confidence              2457889999999999  5567778999875

>cd08230 glucose_DH Glucose dehydrogenase

Probab=99.47  E-value=1.8e-13  Score=90.97  Aligned_cols=91  Identities=22%  Similarity=0.220  Sum_probs=75.0

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--Ccccc----chhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVP----LTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~----~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      .+++|++|||+|.+..+..++++++++|+++.+|...+  ...++    ...++++++++.|++.. ++++.++++++.+
T Consensus       236 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~~~~l~~  315 (355)
T cd08230         236 VGEFDLIIEATGVPPLAFEALPALAPNGVVILFGVPGGGREFEVDGGELNRDLVLGNKALVGSVNANKRHFEQAVEDLAQ  315 (355)
T ss_pred             cCCCCEEEECcCCHHHHHHHHHHccCCcEEEEEecCCCCCccccChhhhhhhHhhcCcEEEEecCCchhhHHHHHHHHHh
Confidence            35799999999988779999999999999999997654  33444    34567899999998776 7789999999998


Q ss_pred             CCC----CCCCceeeeeeCCCC
Q 040104           87 GKI----DIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i----~~~~~i~~~~~l~~~  104 (105)
                      +++    +++++++++|+|+|+
T Consensus       316 ~~~~~~~~~~~~i~~~~~l~~~  337 (355)
T cd08230         316 WKYRWPGVLERLITRRVPLEEF  337 (355)
T ss_pred             cccccccchHHheeeeecHHHH
Confidence            872    247789999999875

Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai

>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH)

Probab=99.39  E-value=3.4e-12  Score=84.90  Aligned_cols=98  Identities=22%  Similarity=0.412  Sum_probs=80.0

Q ss_pred             HHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            7 EKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         7 ~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      +.+++.+ ++++|++|||+|+...+..++++++++|+++.+|....  ...++...+..+++++.+++.+ .+++.++++
T Consensus       239 ~~i~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  318 (361)
T cd08231         239 AIVRDITGGRGADVVIEASGHPAAVPEGLELLRRGGTYVLVGSVAPAGTVPLDPERIVRKNLTIIGVHNYDPSHLYRAVR  318 (361)
T ss_pred             HHHHHHhCCCCCcEEEECCCChHHHHHHHHHhccCCEEEEEcCCCCCCccccCHHHHhhcccEEEEcccCCchhHHHHHH
Confidence            4677777 46899999999987668999999999999999996542  2334444568899999998876 778999999


Q ss_pred             HHHcC--CCCCCCceeeeeeCCCC
Q 040104           83 FLRSG--KIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g--~i~~~~~i~~~~~l~~~  104 (105)
                      ++.++  .++++++++++|+++++
T Consensus       319 ~~~~~~~~~~~~~~i~~~~~l~~~  342 (361)
T cd08231         319 FLERTQDRFPFAELVTHRYPLEDI  342 (361)
T ss_pred             HHHhccCcCCchhheeeeeeHHHH
Confidence            99998  66678889999999875

This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino

>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1

Probab=99.37  E-value=2.7e-12  Score=84.25  Aligned_cols=97  Identities=11%  Similarity=0.148  Sum_probs=76.6

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cc-cccchhhhhcCeEEEEeecc-------
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EM-TVPLTPAAAREVDVVGVFRY-------   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~-~~~~~~~~~~~~~i~~~~~~-------   73 (105)
                      ++.+.+++.+ ++++|++||++|+.. ....+.+++++|+++.+|.... .. .++...++.+++++.++...       
T Consensus       199 ~~~~~v~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  277 (324)
T cd08291         199 DFLEDLKELIAKLNATIFFDAVGGGL-TGQILLAMPYGSTLYVYGYLSGKLDEPIDPVDLIFKNKSIEGFWLTTWLQKLG  277 (324)
T ss_pred             cHHHHHHHHhCCCCCcEEEECCCcHH-HHHHHHhhCCCCEEEEEEecCCCCcccCCHHHHhhcCcEEEEEEHHHhhcccC
Confidence            5667788877 468999999999887 7888999999999999996432 22 25555667899999888754       


Q ss_pred             CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+.+++++++++ |++  +++++++|||+|+
T Consensus       278 ~~~~~~~~~~~~-~~~--~~~i~~~~~l~~~  305 (324)
T cd08291         278 PEVVKKLKKLVK-TEL--KTTFASRYPLALT  305 (324)
T ss_pred             HHHHHHHHHHHh-Ccc--ccceeeEEcHHHH
Confidence            235778889988 877  7789999999875

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin

>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]

Probab=99.34  E-value=1e-11  Score=80.81  Aligned_cols=97  Identities=19%  Similarity=0.277  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      ++..+++.+.++.++|.+...  ....++.+++++|++|++|.+|.+..+..++..++.++.++|.||... +.+.+|++
T Consensus       237 ~d~~~~~~~~~dg~~~~v~~~--a~~~~~~~~~~lk~~Gt~V~vg~p~~~~~~~~~~lil~~~~I~GS~vG~~ket~E~L  314 (360)
T KOG0023|consen  237 PDIMKAIMKTTDGGIDTVSNL--AEHALEPLLGLLKVNGTLVLVGLPEKPLKLDTFPLILGRKSIKGSIVGSRKETQEAL  314 (360)
T ss_pred             HHHHHHHHHhhcCcceeeeec--cccchHHHHHHhhcCCEEEEEeCcCCcccccchhhhcccEEEEeeccccHHHHHHHH
Confidence            456677777776677777765  344599999999999999999999888888999999999999999998 99999999


Q ss_pred             HHHHcCCCCCCCceeeeeeCCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++|.+  +.+|. ..|++++
T Consensus       315 df~a~~~i--k~~IE-~v~~~~v  334 (360)
T KOG0023|consen  315 DFVARGLI--KSPIE-LVKLSEV  334 (360)
T ss_pred             HHHHcCCC--cCceE-EEehhHH
Confidence            99999999  66676 7888875

>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein

Probab=99.28  E-value=1.1e-11  Score=81.84  Aligned_cols=87  Identities=17%  Similarity=0.183  Sum_probs=72.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      +++|+++++.|....+..++++++++|+++.+|... ....++...++++++++.+++.. +.++.++++++++|+++  
T Consensus       222 ~~~d~~i~~~~~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~--  299 (329)
T TIGR02822       222 EPLDAAILFAPAGGLVPPALEALDRGGVLAVAGIHLTDTPPLNYQRHLFYERQIRSVTSNTRADAREFLELAAQHGVR--  299 (329)
T ss_pred             ccceEEEECCCcHHHHHHHHHhhCCCcEEEEEeccCccCCCCCHHHHhhCCcEEEEeecCCHHHHHHHHHHHHhCCCe--
Confidence            368999998888788999999999999999999753 22346666677899999998776 66789999999999984  


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                       +++++|||+|+
T Consensus       300 -~i~~~~~l~~~  310 (329)
T TIGR02822       300 -VTTHTYPLSEA  310 (329)
T ss_pred             -eEEEEEeHHHH
Confidence             46889999985

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.

>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases

Probab=99.27  E-value=4.3e-11  Score=79.36  Aligned_cols=101  Identities=23%  Similarity=0.330  Sum_probs=74.4

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cccchh--hhhcCeEEEEeecc--CCC
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TVPLTP--AAAREVDVVGVFRY--KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~--~~~~~~~i~~~~~~--~~~   76 (105)
                      +..+++++.+ +.++|+++|++|++..+..++++++++|+++.+|......  .++...  ...+..++.+.+..  ++.
T Consensus       222 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~  301 (351)
T cd08285         222 DVVEQILKLTGGKGVDAVIIAGGGQDTFEQALKVLKPGGTISNVNYYGEDDYLPIPREEWGVGMGHKTINGGLCPGGRLR  301 (351)
T ss_pred             CHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCceeecChhhhhhhccccEEEEeecCCcccc
Confidence            3455666666 4689999999998777999999999999999999765332  223212  23466677766554  678


Q ss_pred             HHHHHHHHHcCCCCCCCc-eeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPL-VTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~-i~~~~~l~~~  104 (105)
                      ++++++++++|++++..+ ++++|+|+++
T Consensus       302 ~~~~~~~~~~g~i~~~~~~~~~~~~l~~~  330 (351)
T cd08285         302 MERLASLIEYGRVDPSKLLTHHFFGFDDI  330 (351)
T ss_pred             HHHHHHHHHcCCCChhhceeccccCHHHH
Confidence            999999999999977444 4556898875

This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like

Probab=99.26  E-value=4.5e-11  Score=79.03  Aligned_cols=100  Identities=27%  Similarity=0.449  Sum_probs=78.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEF   83 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   83 (105)
                      ..+.+.+.+ ++++|+++||+|+...+..+++.++++|+++.+|.......+++..++.+++++.+.......+.+++++
T Consensus       223 ~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (345)
T cd08286         223 AIEQVLELTDGRGVDVVIEAVGIPATFELCQELVAPGGHIANVGVHGKPVDLHLEKLWIKNITITTGLVDTNTTPMLLKL  302 (345)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhccCCcEEEEecccCCCCCcCHHHHhhcCcEEEeecCchhhHHHHHHH
Confidence            445566666 4589999999998777899999999999999999765445566655667889988765444678899999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++|.+++.++++++|+++++
T Consensus       303 ~~~~~l~~~~~~~~~~~l~~~  323 (345)
T cd08286         303 VSSGKLDPSKLVTHRFKLSEI  323 (345)
T ss_pred             HHcCCCChHHcEEeEeeHHHH
Confidence            999999766667889998764

This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (

>cd05279 Zn_ADH1 Liver alcohol dehydrogenase and related zinc-dependent alcohol dehydrogenases

Probab=99.26  E-value=3.7e-11  Score=80.26  Aligned_cols=100  Identities=27%  Similarity=0.397  Sum_probs=79.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhh-cCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATR-AGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~-~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +..+.+++.+++++|+++|++|....+..++++++ ++|+++.+|...  ....++...+ .++.++.|++..    ...
T Consensus       241 ~~~~~l~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~~G~~v~~g~~~~~~~~~~~~~~~-~~~~~l~g~~~~~~~~~~~  319 (365)
T cd05279         241 PIVEVLTEMTDGGVDYAFEVIGSADTLKQALDATRLGGGTSVVVGVPPSGTEATLDPNDL-LTGRTIKGTVFGGWKSKDS  319 (365)
T ss_pred             hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhccCCCEEEEEecCCCCCceeeCHHHH-hcCCeEEEEeccCCchHhH
Confidence            45566777777789999999998667999999999 999999998653  3455655555 677888887543    577


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.++++++++|++++.++++++|+++++
T Consensus       320 ~~~~~~l~~~~~l~~~~~~~~~~~l~~~  347 (365)
T cd05279         320 VPKLVALYRQKKFPLDELITHVLPFEEI  347 (365)
T ss_pred             HHHHHHHHHcCCcchhHheeeeecHHHH
Confidence            8999999999999876678888998764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall

>cd08256 Zn_ADH2 Alcohol dehydrogenases of the MDR family

Probab=99.26  E-value=5.8e-11  Score=78.73  Aligned_cols=100  Identities=24%  Similarity=0.412  Sum_probs=77.2

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh-hhcCeEEEEeeccCCCHHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA-AAREVDVVGVFRYKNTWPLCLE   82 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~   82 (105)
                      ..+++.+.+ +.++|+++|++|+...+..++++++++|+++.+|.......+++..+ ..+++++.++......+.++++
T Consensus       231 ~~~~~~~~~~~~~vdvvld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  310 (350)
T cd08256         231 VVEKIKELTGGYGCDIYIEATGHPSAVEQGLNMIRKLGRFVEFSVFGDPVTVDWSIIGDRKELDVLGSHLGPYCYPIAID  310 (350)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEccCCCCCccChhHhhcccccEEEEeccCchhHHHHHH
Confidence            456667776 45899999999976568999999999999999986554444444433 3567888887666667999999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|.+++.++++++||++++
T Consensus       311 ~~~~g~l~~~~~~~~~~~l~~~  332 (350)
T cd08256         311 LIASGRLPTDGIVTHQFPLEDF  332 (350)
T ss_pred             HHHcCCCChhHheEEEeEHHHH
Confidence            9999999765557788998764

This group has the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenases of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH,

>cd08265 Zn_ADH3 Alcohol dehydrogenases of the MDR family

Probab=99.25  E-value=6.9e-11  Score=79.46  Aligned_cols=101  Identities=24%  Similarity=0.407  Sum_probs=78.8

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPL   79 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~   79 (105)
                      +..+.+++.+ +.++|+++|++|++ ..+..++++++++|+++.+|.......++...+..+..++.++...  ...+.+
T Consensus       262 ~~~~~v~~~~~g~gvDvvld~~g~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  341 (384)
T cd08265         262 LSGEKVMEVTKGWGADIQVEAAGAPPATIPQMEKSIAINGKIVYIGRAATTVPLHLEVLQVRRAQIVGAQGHSGHGIFPS  341 (384)
T ss_pred             cHHHHHHHhcCCCCCCEEEECCCCcHHHHHHHHHHHHcCCEEEEECCCCCCCcccHHHHhhCceEEEEeeccCCcchHHH
Confidence            4566778888 56899999999974 4588999999999999999965444444555566777888887643  567999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|++++..+++++|+++++
T Consensus       342 ~~~ll~~g~l~~~~~~~~~~~~~~~  366 (384)
T cd08265         342 VIKLMASGKIDMTKIITARFPLEGI  366 (384)
T ss_pred             HHHHHHcCCCChHHheEEEeeHHHH
Confidence            9999999999766567788998764

This group resembles the zinc-dependent alcohol dehydrogenase and has the catalytic and structural zinc-binding sites characteristic of this group. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanedi

>PLN02702 L-idonate 5-dehydrogenase

Probab=99.24  E-value=1.1e-10  Score=77.96  Aligned_cols=88  Identities=92%  Similarity=1.529  Sum_probs=72.0

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~   93 (105)
                      ++++|++||++|+...+..++++++++|+++.+|.......+....+..+++++.+++.....+.+++++++++++++++
T Consensus       252 ~~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~l~~~~  331 (364)
T PLN02702        252 GGGIDVSFDCVGFNKTMSTALEATRAGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYRNTWPLCLEFLRSGKIDVKP  331 (364)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCCcccHHHHHhCccEEEEeccChHHHHHHHHHHHcCCCCchH
Confidence            56899999999976679999999999999999996543334455567788999998876666889999999999997666


Q ss_pred             ceeeeeeC
Q 040104           94 LVTHRFGF  101 (105)
Q Consensus        94 ~i~~~~~l  101 (105)
                      +++++|++
T Consensus       332 ~~~~~~~l  339 (364)
T PLN02702        332 LITHRFGF  339 (364)
T ss_pred             heEEEecc
Confidence            78888766

>cd08287 FDH_like_ADH3 formaldehyde dehydrogenase (FDH)-like

Probab=99.24  E-value=5.2e-11  Score=78.66  Aligned_cols=100  Identities=22%  Similarity=0.402  Sum_probs=79.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      ..+.+.+.+ +.++|+++|++|++..+..++++++++|+++.+|....+..++....+.+++++.+.... ...+.++++
T Consensus       225 ~~~~i~~~~~~~~~d~il~~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (345)
T cd08287         225 AVARVRELTGGVGADAVLECVGTQESMEQAIAIARPGGRVGYVGVPHGGVELDVRELFFRNVGLAGGPAPVRRYLPELLD  304 (345)
T ss_pred             HHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhccCCEEEEecccCCCCccCHHHHHhcceEEEEecCCcHHHHHHHHH
Confidence            445666666 458999999999877799999999999999999876544445554557889999887655 678999999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|++++.++++++++++++
T Consensus       305 ~~~~~~l~~~~~~~~~~~l~~~  326 (345)
T cd08287         305 DVLAGRINPGRVFDLTLPLDEV  326 (345)
T ss_pred             HHHcCCCCHHHhEEeeecHHHH
Confidence            9999999765567778888764

This group contains proteins identified as alcohol dehydrogenases and glutathione-dependant formaldehyde dehydrogenases (FDH) of the zinc-dependent/medium chain alcohol dehydrogenase family. The MDR family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase

Probab=99.23  E-value=5.2e-11  Score=78.66  Aligned_cols=98  Identities=16%  Similarity=0.244  Sum_probs=72.8

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-c-----cccchhhhhcCeEEEEeecc----
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-M-----TVPLTPAAAREVDVVGVFRY----   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~----   73 (105)
                      ++.+.+++.+++|+|++||++|+.. +..++++++++|+++.+|..... .     ..+...+.++++++.++...    
T Consensus       209 ~~~~~i~~~~~~gvd~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  287 (338)
T cd08295         209 DLDAALKRYFPNGIDIYFDNVGGKM-LDAVLLNMNLHGRIAACGMISQYNLEWPEGVRNLLNIIYKRVKIQGFLVGDYLH  287 (338)
T ss_pred             cHHHHHHHhCCCCcEEEEECCCHHH-HHHHHHHhccCcEEEEecccccCCCCCCCCccCHHHHhhccceeeEEEehhhHH
Confidence            4556677766678999999999855 99999999999999999864321 1     12334566788888886543    


Q ss_pred             --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                        ...+.++++++.+|++++  .+..+|||+++
T Consensus       288 ~~~~~~~~~~~l~~~g~l~~--~~~~~~~l~~~  318 (338)
T cd08295         288 RYPEFLEEMSGYIKEGKLKY--VEDIADGLESA  318 (338)
T ss_pred             HHHHHHHHHHHHHHCCCeEc--eeecccCHHHH
Confidence              234788899999999954  45567898874

This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in

>PRK10083 putative oxidoreductase; Provisional

Probab=99.23  E-value=5.3e-11  Score=78.45  Aligned_cols=89  Identities=19%  Similarity=0.381  Sum_probs=70.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCce
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLV   95 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~i   95 (105)
                      ++|++||++|++..+..++++++++|+++.+|....+..++...+..+++++.++......++++++++++|++++.+++
T Consensus       228 ~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~  307 (339)
T PRK10083        228 KPTLIIDAACHPSILEEAVTLASPAARIVLMGFSSEPSEIVQQGITGKELSIFSSRLNANKFPVVIDWLSKGLIDPEKLI  307 (339)
T ss_pred             CCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCceecHHHHhhcceEEEEEecChhhHHHHHHHHHcCCCChHHhe
Confidence            46799999998767999999999999999999754433344444456778887776556789999999999999765567


Q ss_pred             eeeeeCCCC
Q 040104           96 THRFGFSQK  104 (105)
Q Consensus        96 ~~~~~l~~~  104 (105)
                      +++||++++
T Consensus       308 ~~~~~l~~~  316 (339)
T PRK10083        308 THTFDFQHV  316 (339)
T ss_pred             eeeecHHHH
Confidence            889998764

>cd05285 sorbitol_DH Sorbitol dehydrogenase

Probab=99.21  E-value=1.5e-10  Score=76.58  Aligned_cols=99  Identities=52%  Similarity=0.922  Sum_probs=78.0

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFL   84 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v   84 (105)
                      .+.+.+.+ ++++|+++||+|+...+..++++++++|+++.+|.......+++..+.++++++.+++.....+.++++++
T Consensus       223 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  302 (343)
T cd05285         223 AEKIAELLGGKGPDVVIECTGAESCIQTAIYATRPGGTVVLVGMGKPEVTLPLSAASLREIDIRGVFRYANTYPTAIELL  302 (343)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEccCCCCCccCHHHHhhCCcEEEEeccChHHHHHHHHHH
Confidence            55666666 46799999999987568999999999999999986554344455566778888888766667889999999


Q ss_pred             HcCCCCCCCceeeeeeCCCC
Q 040104           85 RSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        85 ~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++.+.++++++|+++++
T Consensus       303 ~~~~l~~~~~~~~~~~l~~~  322 (343)
T cd05285         303 ASGKVDVKPLITHRFPLEDA  322 (343)
T ss_pred             HcCCCCchHhEEEEEeHHHH
Confidence            99988655567778888764

Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>cd08284 FDH_like_2 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 2

Probab=99.21  E-value=1.2e-10  Score=76.95  Aligned_cols=101  Identities=27%  Similarity=0.438  Sum_probs=77.8

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+.+.+.+ ++++|++||++|+...+..++++++++|+++.+|... ..........+.+++++.+.... +..++++
T Consensus       222 ~~~~~l~~~~~~~~~dvvid~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (344)
T cd08284         222 EPVERVREATEGRGADVVLEAVGGAAALDLAFDLVRPGGVISSVGVHTAEEFPFPGLDAYNKNLTLRFGRCPVRSLFPEL  301 (344)
T ss_pred             CHHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHhcccCCEEEEECcCCCCCccccHHHHhhcCcEEEEecCCcchhHHHH
Confidence            3456677777 4689999999998767999999999999999999754 22334444556788888766444 7889999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.++++++.++++++|+++++
T Consensus       302 ~~~~~~~~i~~~~~~~~~~~~~~~  325 (344)
T cd08284         302 LPLLESGRLDLEFLIDHRMPLEEA  325 (344)
T ss_pred             HHHHHcCCCChHHhEeeeecHHHH
Confidence            999999999765567778887764

Glutathione-dependent formaldehyde dehydrogenases (FDHs) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD to formate and NADH. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. These tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typical

>PRK05396 tdh L-threonine 3-dehydrogenase; Validated

Probab=99.20  E-value=1.9e-10  Score=75.98  Aligned_cols=100  Identities=21%  Similarity=0.473  Sum_probs=77.2

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~   80 (105)
                      ++.+.+++.+ ++++|++|||+|+...+..++++++++|+++.+|..+....++...+.++++++.++...  .+.+.++
T Consensus       219 ~~~~~~~~~~~~~~~d~v~d~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  298 (341)
T PRK05396        219 DLRDVMAELGMTEGFDVGLEMSGAPSAFRQMLDNMNHGGRIAMLGIPPGDMAIDWNKVIFKGLTIKGIYGREMFETWYKM  298 (341)
T ss_pred             cHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCcccHHHHhhcceEEEEEEccCccchHHHH
Confidence            3456677776 568999999999877799999999999999999976544455555667888888887533  4566778


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.++ +++.+++.++|+++++
T Consensus       299 ~~~~~~~-~~~~~~~~~~~~l~~~  321 (341)
T PRK05396        299 SALLQSG-LDLSPIITHRFPIDDF  321 (341)
T ss_pred             HHHHHcC-CChhHheEEEEeHHHH
Confidence            8999998 5446667788888764

>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase

Probab=99.20  E-value=8.1e-11  Score=77.35  Aligned_cols=97  Identities=22%  Similarity=0.262  Sum_probs=70.8

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-----Cccc--cchhhhhcCeEEEEeecc----
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-----EMTV--PLTPAAAREVDVVGVFRY----   73 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-----~~~~--~~~~~~~~~~~i~~~~~~----   73 (105)
                      +.+.+++.+++++|++||++|+.. +..++++++++|+++.+|....     ..+.  ....+.++++++.+++..    
T Consensus       196 ~~~~~~~~~~~gvdvv~d~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  274 (325)
T TIGR02825       196 LEETLKKASPDGYDCYFDNVGGEF-SNTVIGQMKKFGRIAICGAISTYNRTGPLPPGPPPEIVIYQELRMEGFIVNRWQG  274 (325)
T ss_pred             HHHHHHHhCCCCeEEEEECCCHHH-HHHHHHHhCcCcEEEEecchhhcccCCCCCCCcchHHHhhhcceEeEEEehhhhh
Confidence            334455555668999999999876 8999999999999999996431     1111  223456788888887632    


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         ...++++++++++|++++.  +..+|||+++
T Consensus       275 ~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~  306 (325)
T TIGR02825       275 EVRQKALKELLKWVLEGKIQYK--EYVIEGFENM  306 (325)
T ss_pred             hhhHHHHHHHHHHHHCCCcccc--eeccccHHHH
Confidence               2367889999999999553  5557888874

Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.

>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]

Probab=99.20  E-value=9.2e-11  Score=75.90  Aligned_cols=91  Identities=18%  Similarity=0.229  Sum_probs=73.4

Q ss_pred             hhHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC---CCC-cc---ccchhhhhcCeEEEEeecc-
Q 040104            2 IAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG---HHE-MT---VPLTPAAAREVDVVGVFRY-   73 (105)
Q Consensus         2 ~~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~---~~~-~~---~~~~~~~~~~~~i~~~~~~-   73 (105)
                      .+++.+++++.+++|+|+.||++|++. ++..+..|+..+|+..+|.-   ..+ .+   -....++.+++++.|+... 
T Consensus       205 ~~d~~~~L~~a~P~GIDvyfeNVGg~v-~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~gp~~l~~l~~kr~~v~Gfiv~~  283 (340)
T COG2130         205 AEDFAQALKEACPKGIDVYFENVGGEV-LDAVLPLLNLFARIPVCGAISQYNAPELPPGPRRLPLLMAKRLRVQGFIVAS  283 (340)
T ss_pred             cccHHHHHHHHCCCCeEEEEEcCCchH-HHHHHHhhccccceeeeeehhhcCCCCCCCCcchhhHHHhhhheeEEEEech
Confidence            367889999999999999999999987 99999999999999999962   222 11   1233456789999999873 


Q ss_pred             ------CCCHHHHHHHHHcCCCCCCC
Q 040104           74 ------KNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        74 ------~~~~~~~~~~v~~g~i~~~~   93 (105)
                            .+..++|..|+.+|+|+.+.
T Consensus       284 ~~~~~~~e~~~~l~~wv~~GKi~~~e  309 (340)
T COG2130         284 DYDQRFPEALRELGGWVKEGKIQYRE  309 (340)
T ss_pred             hhhhhhHHHHHHHHHHHHcCceeeEe
Confidence                  35678899999999996654

>cd08246 crotonyl_coA_red crotonyl-CoA reductase

Probab=99.19  E-value=1.1e-10  Score=78.66  Aligned_cols=97  Identities=18%  Similarity=0.208  Sum_probs=77.1

Q ss_pred             HHHHHHHHcC-C-CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            5 EVEKIDKAMG-T-GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         5 ~~~~~~~~~~-~-g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +.+.+++.++ . ++|++|||+|+.. +..++++++++|+++.+|.... ...++...+..++.++.+++.. ...+.++
T Consensus       272 ~~~~v~~l~~~~~g~d~vid~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~l~~~~~~i~g~~~~~~~~~~~~  350 (393)
T cd08246         272 FGKAIWDILGGREDPDIVFEHPGRAT-FPTSVFVCDRGGMVVICAGTTGYNHTYDNRYLWMRQKRIQGSHFANDREAAEA  350 (393)
T ss_pred             HHHHHHHHhCCCCCCeEEEECCchHh-HHHHHHHhccCCEEEEEcccCCCCCCCcHHHHhhheeEEEecccCcHHHHHHH
Confidence            4466777774 4 8999999999855 8999999999999999986432 2445666677788888888666 5688999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++.++  +.++++|+++++
T Consensus       351 ~~~~~~~~l~--~~~~~~~~l~~~  372 (393)
T cd08246         351 NRLVMKGRID--PCLSKVFSLDET  372 (393)
T ss_pred             HHHHHcCCce--eeeeEEEeHHHH
Confidence            9999999884  557889998864

Crotonyl-CoA reductase, a member of the medium chain dehydrogenase/reductase family, catalyzes the NADPH-dependent conversion of crotonyl-CoA to butyryl-CoA, a step in (2S)-methylmalonyl-CoA production for straight-chain fatty acid biosynthesis. Like enoyl reductase, another enzyme in fatty acid synthesis, crotonyl-CoA reductase is a member of the zinc-dependent alcohol dehydrogenase-like medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossma

>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.18  E-value=1.5e-10  Score=75.81  Aligned_cols=89  Identities=28%  Similarity=0.428  Sum_probs=72.8

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~   93 (105)
                      ++++|+++||+|+...+..++++++++|+++..|.......+++..+..++.++.+++..  .++++++++++|++++.+
T Consensus       212 ~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~~~~l~~~~  289 (319)
T cd08242         212 GGGFDVVVEATGSPSGLELALRLVRPRGTVVLKSTYAGPASFDLTKAVVNEITLVGSRCG--PFAPALRLLRKGLVDVDP  289 (319)
T ss_pred             CCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCccCHHHheecceEEEEEecc--cHHHHHHHHHcCCCChhh
Confidence            457999999999876689999999999999998765545556666677888888877543  388999999999997767


Q ss_pred             ceeeeeeCCCC
Q 040104           94 LVTHRFGFSQK  104 (105)
Q Consensus        94 ~i~~~~~l~~~  104 (105)
                      +++++||++++
T Consensus       290 ~~~~~~~l~~~  300 (319)
T cd08242         290 LITAVYPLEEA  300 (319)
T ss_pred             ceEEEEeHHHH
Confidence            78889998874

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta

>TIGR00692 tdh L-threonine 3-dehydrogenase

Probab=99.17  E-value=2.2e-10  Score=75.73  Aligned_cols=101  Identities=28%  Similarity=0.578  Sum_probs=76.4

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch-hhhhcCeEEEEeecc--CCCHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT-PAAAREVDVVGVFRY--KNTWPL   79 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~   79 (105)
                      ++.+.+.+.+ ++++|+++||+|+...+..++++++++|+++.+|.......++.. .+.+++.++.+.+..  .+.+.+
T Consensus       217 ~~~~~l~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (340)
T TIGR00692       217 DVVKEVADLTDGEGVDVFLEMSGAPKALEQGLQAVTPGGRVSLLGLPPGKVTIDFTNKVIFKGLTIYGITGRHMFETWYT  296 (340)
T ss_pred             CHHHHHHHhcCCCCCCEEEECCCCHHHHHHHHHhhcCCCEEEEEccCCCCcccchhhhhhhcceEEEEEecCCchhhHHH
Confidence            3456666666 468999999999877789999999999999999975433334444 466788888776532  456788


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|++++.+++++.++++++
T Consensus       297 ~~~~l~~~~l~~~~~~~~~~~l~~~  321 (340)
T TIGR00692       297 VSRLIQSGKLDLDPIITHKFKFDKF  321 (340)
T ss_pred             HHHHHHcCCCChHHheeeeeeHHHH
Confidence            9999999999755667778888764

E. coli His-90 modulates substrate specificity and is believed part of the active site.

>cd08258 Zn_ADH4 Alcohol dehydrogenases of the MDR family

Probab=99.17  E-value=4.4e-10  Score=73.51  Aligned_cols=84  Identities=26%  Similarity=0.505  Sum_probs=69.7

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+.+.+.+ ++++|.++|++|+...+..++++++++|+++.+|... ....+++..++++++++.|++.+ +++++++
T Consensus       220 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  299 (306)
T cd08258         220 DLAELVNEITDGDGADVVIECSGAVPALEQALELLRKGGRIVQVGIFGPLAASIDVERIIQKELSVIGSRSSTPASWETA  299 (306)
T ss_pred             CHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHhhcCCEEEEEcccCCCCcccCHHHHhhcCcEEEEEecCchHhHHHH
Confidence            3445566666 4689999999987666899999999999999999754 34566777788899999999988 8899999


Q ss_pred             HHHHHcC
Q 040104           81 LEFLRSG   87 (105)
Q Consensus        81 ~~~v~~g   87 (105)
                      ++++++|
T Consensus       300 ~~~~~~~  306 (306)
T cd08258         300 LRLLASG  306 (306)
T ss_pred             HHHHhcC
Confidence            9999876

This group shares the zinc coordination sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of an beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous

>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1

Probab=99.17  E-value=2.5e-10  Score=76.85  Aligned_cols=100  Identities=26%  Similarity=0.429  Sum_probs=77.9

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCCh---------------------HHHHHHHHhhhcCCEEEEEcCCCC-Cccccchhhh
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFN---------------------KTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAA   61 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~---------------------~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~   61 (105)
                      +.+.+++.+ ++++|++||++|+.                     ..++.++++++++|+++.+|.... ...++...++
T Consensus       242 ~~~~l~~~~~~~~~D~vld~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~  321 (386)
T cd08283         242 VVEALRELTGGRGPDVCIDAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGVYGGTVNKFPIGAAM  321 (386)
T ss_pred             HHHHHHHHcCCCCCCEEEECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcCCCCCcCccCHHHHH
Confidence            566677777 45899999999853                     358899999999999999997543 2334544567


Q ss_pred             hcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           62 AREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        62 ~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+++++.++... ...+.++++++++|++++.++++++|+++++
T Consensus       322 ~~~~~i~~~~~~~~~~~~~~~~~l~~g~l~~~~~~~~~~~l~~~  365 (386)
T cd08283         322 NKGLTLRMGQTHVQRYLPRLLELIESGELDPSFIITHRLPLEDA  365 (386)
T ss_pred             hCCcEEEeccCCchHHHHHHHHHHHcCCCChhHceEEEecHHHH
Confidence            788888887655 6789999999999999766667778998764

Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T

>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase

Probab=99.16  E-value=2e-10  Score=76.73  Aligned_cols=99  Identities=26%  Similarity=0.400  Sum_probs=76.1

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      ..+.+.+.++.++|+++||+|.+..+..++++++++|+++.+|...  ....+++..+..++.++.++...    .+.++
T Consensus       243 ~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (365)
T cd08278         243 LVAAIREITGGGVDYALDTTGVPAVIEQAVDALAPRGTLALVGAPPPGAEVTLDVNDLLVSGKTIRGVIEGDSVPQEFIP  322 (365)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCcHHHHHHHHHhccCCEEEEeCcCCCCCccccCHHHHhhcCceEEEeecCCcChHHHHH
Confidence            4556666666689999999998777999999999999999999753  33456666666788888877543    35678


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++|++++.++++ +|+++++
T Consensus       323 ~~~~~l~~g~l~~~~~~~-~~~l~~~  347 (365)
T cd08278         323 RLIELYRQGKFPFDKLVT-FYPFEDI  347 (365)
T ss_pred             HHHHHHHcCCCChHHheE-EecHHHH
Confidence            899999999986544554 7888764

Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu

>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase

Probab=99.14  E-value=4e-10  Score=74.71  Aligned_cols=98  Identities=27%  Similarity=0.369  Sum_probs=76.0

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF   83 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~   83 (105)
                      ..+.+.+..++++|++||++|....+..++++++++|+++.+|.......++...+.+++.++.+++.. .+++.+++++
T Consensus       232 ~~~~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~l  311 (350)
T cd08240         232 AAKRIIKAAGGGVDAVIDFVNNSATASLAFDILAKGGKLVLVGLFGGEATLPLPLLPLRALTIQGSYVGSLEELRELVAL  311 (350)
T ss_pred             HHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCeEEEECCCCCCCcccHHHHhhcCcEEEEcccCCHHHHHHHHHH
Confidence            345566666448999999999877799999999999999999876544444555556788999888766 5788999999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++|.++  +...++|+++++
T Consensus       312 l~~~~i~--~~~~~~~~~~~~  330 (350)
T cd08240         312 AKAGKLK--PIPLTERPLSDV  330 (350)
T ss_pred             HHcCCCc--cceeeEEcHHHH
Confidence            9999985  345567888754

6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy

>cd08262 Zn_ADH8 Alcohol dehydrogenases of the MDR family

Probab=99.14  E-value=4.2e-10  Score=74.25  Aligned_cols=96  Identities=22%  Similarity=0.388  Sum_probs=72.1

Q ss_pred             HHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104            9 IDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus         9 ~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      +.+.+ ++++|+++|++|+...+..++++++++|+++.+|.......+.......++.++.++... .+.+.++++++++
T Consensus       225 ~~~~~~~~~~d~vid~~g~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~  304 (341)
T cd08262         225 ELARAGGPKPAVIFECVGAPGLIQQIIEGAPPGGRIVVVGVCMESDNIEPALAIRKELTLQFSLGYTPEEFADALDALAE  304 (341)
T ss_pred             HHHHhCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEECCCCCCCccCHHHHhhcceEEEEEecccHHHHHHHHHHHHc
Confidence            33444 468999999999864589999999999999999975432223322335677888776555 5678999999999


Q ss_pred             CCCCCCCceeeeeeCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~  104 (105)
                      |++++.++++++|+++++
T Consensus       305 g~i~~~~~i~~~~~l~~~  322 (341)
T cd08262         305 GKVDVAPMVTGTVGLDGV  322 (341)
T ss_pred             CCCChHHheEEEeeHHHH
Confidence            999766667888998764

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>PF13602 ADH_zinc_N_2: Zinc-binding dehydrogenase; PDB: 3TQH_A 2VN8_A 3GOH_A 4A27_A

Probab=99.13  E-value=3.6e-12  Score=73.46  Aligned_cols=83  Identities=22%  Similarity=0.362  Sum_probs=53.0

Q ss_pred             CCCCcEEEEccC--ChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhh--hhcCeEEEEeec------cCCCHHHHHHH
Q 040104           14 GTGIDVSFDCAG--FNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA--AAREVDVVGVFR------YKNTWPLCLEF   83 (105)
Q Consensus        14 ~~g~d~vid~~g--~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~--~~~~~~i~~~~~------~~~~~~~~~~~   83 (105)
                      ++++|+|||++|  ....+..+.++| ++|+++.+|.     .......  .....+......      ..+.+++++++
T Consensus        17 ~~~~D~ViD~~g~~~~~~~~~~~~~l-~~G~~v~i~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l   90 (127)
T PF13602_consen   17 PGGVDVVIDTVGQTGESLLDASRKLL-PGGRVVSIGG-----DLPSFARRLKGRSIRYSFLFSVDPNAIRAEALEELAEL   90 (127)
T ss_dssp             TS-EEEEEESS-CCHHHCGGGCCCTE-EEEEEEEE-S-----HHHHHHHHHHCHHCEEECCC-H--HHHHHHHHHHHHHH
T ss_pred             CCCceEEEECCCCccHHHHHHHHHHC-CCCEEEEECC-----cccchhhhhcccceEEEEEEecCCCchHHHHHHHHHHH
Confidence            579999999999  665447777888 9999999973     1111111  122333333321      13459999999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++|++  ++.|+++|||+++
T Consensus        91 ~~~G~l--~~~i~~~f~l~~~  109 (127)
T PF13602_consen   91 VAEGKL--KPPIDRVFPLEEA  109 (127)
T ss_dssp             HHTTSS-----EEEEEEGGGH
T ss_pred             HHCCCe--EEeeccEECHHHH
Confidence            999999  7789999999985

>cd08260 Zn_ADH6 Alcohol dehydrogenases of the MDR family

Probab=99.12  E-value=6.2e-10  Score=73.62  Aligned_cols=101  Identities=26%  Similarity=0.481  Sum_probs=77.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC---ccccchhhhhcCeEEEEeecc-CCCHHH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE---MTVPLTPAAAREVDVVGVFRY-KNTWPL   79 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~~~~~~~~~~~~~~i~~~~~~-~~~~~~   79 (105)
                      +....+.+..++++|.+|||+|+...+..++++++++|+++.+|.....   ..+++..+..++.++.++... ...+++
T Consensus       221 ~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (345)
T cd08260         221 DVAAAVRDLTGGGAHVSVDALGIPETCRNSVASLRKRGRHVQVGLTLGEEAGVALPMDRVVARELEIVGSHGMPAHRYDA  300 (345)
T ss_pred             hHHHHHHHHhCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEeCCcCCCCCccccCHHHHhhcccEEEeCCcCCHHHHHH
Confidence            4455566666448999999999766689999999999999999975432   344555556788898887665 678999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|++++.++++++++++++
T Consensus       301 ~~~l~~~~~i~~~~~~~~~~~~~~~  325 (345)
T cd08260         301 MLALIASGKLDPEPLVGRTISLDEA  325 (345)
T ss_pred             HHHHHHcCCCChhhheeEEecHHHH
Confidence            9999999999765556778888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group has the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (ty

>cd08282 PFDH_like Pseudomonas putida aldehyde-dismutating formaldehyde dehydrogenase (PFDH)

Probab=99.11  E-value=5.2e-10  Score=75.03  Aligned_cols=101  Identities=19%  Similarity=0.293  Sum_probs=76.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChH-----------HHHHHHHhhhcCCEEEEEcCCCC-C------------ccccchh
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNK-----------TMSTALSATRAGGKVCLVGMGHH-E------------MTVPLTP   59 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~-----------~~~~~~~~l~~~G~~v~~g~~~~-~------------~~~~~~~   59 (105)
                      +..+.+.+.+++++|+++||+|...           .++.++++++++|+++.+|.... .            ..++...
T Consensus       231 ~~~~~i~~~~~~~~d~v~d~~g~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  310 (375)
T cd08282         231 DPVEQILGLEPGGVDRAVDCVGYEARDRGGEAQPNLVLNQLIRVTRPGGGIGIVGVYVAEDPGAGDAAAKQGELSFDFGL  310 (375)
T ss_pred             cHHHHHHHhhCCCCCEEEECCCCcccccccccchHHHHHHHHHHhhcCcEEEEEeccCCcccccccccccCccccccHHH
Confidence            3456667666668999999999863           48999999999999998886431 1            2234445


Q ss_pred             hhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           60 AAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        60 ~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +..++.++.+.... +..+++++++++++++++..+++++|+++++
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~~~~~l~~~  356 (375)
T cd08282         311 LWAKGLSFGTGQAPVKKYNRQLRDLILAGRAKPSFVVSHVISLEDA  356 (375)
T ss_pred             HHhcCcEEEEecCCchhhHHHHHHHHHcCCCChHHcEEEEeeHHHH
Confidence            56678887777655 6788999999999999765568889998864

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. PFDH converts 2 molecules of aldehydes to corresponding carboxylic acid and alcohol. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fo

>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity

Probab=99.11  E-value=3e-10  Score=74.46  Aligned_cols=98  Identities=22%  Similarity=0.293  Sum_probs=71.5

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC---Cc----cccchhhhhcCeEEEEeecc---
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH---EM----TVPLTPAAAREVDVVGVFRY---   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~----~~~~~~~~~~~~~i~~~~~~---   73 (105)
                      ++.+++++.+++++|++||++|+.. +..++++++++|+++.+|....   +.    ......+.++++++.++...   
T Consensus       199 ~~~~~v~~~~~~gvd~vld~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  277 (329)
T cd08294         199 SLEEALKEAAPDGIDCYFDNVGGEF-SSTVLSHMNDFGRVAVCGSISTYNDKEPKKGPYVQETIIFKQLKMEGFIVYRWQ  277 (329)
T ss_pred             cHHHHHHHHCCCCcEEEEECCCHHH-HHHHHHhhccCCEEEEEcchhccCCCCCCcCcccHHHHhhhcceEEEEEhhhhH
Confidence            4556777777778999999999855 8999999999999999985321   10    12233467788888887543   


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         ...+.++++++++|++++.  ...+|+++++
T Consensus       278 ~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~  309 (329)
T cd08294         278 DRWPEALKQLLKWIKEGKLKYR--EHVTEGFENM  309 (329)
T ss_pred             HHHHHHHHHHHHHHHCCCCcCC--cccccCHHHH
Confidence               2346788999999999654  3446888764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac

>cd05281 TDH Threonine dehydrogenase

Probab=99.10  E-value=8.4e-10  Score=72.98  Aligned_cols=97  Identities=27%  Similarity=0.534  Sum_probs=74.0

Q ss_pred             HHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch-hhhhcCeEEEEeecc--CCCHHHHHHH
Q 040104            8 KIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT-PAAAREVDVVGVFRY--KNTWPLCLEF   83 (105)
Q Consensus         8 ~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~~~~--~~~~~~~~~~   83 (105)
                      .+.+.+ ++++|++|||+|.......++++++++|+++.+|.......++.. .+.++++++.+....  ...+.+++++
T Consensus       222 ~~~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (341)
T cd05281         222 EVKSVTDGTGVDVVLEMSGNPKAIEQGLKALTPGGRVSILGLPPGPVDIDLNNLVIFKGLTVQGITGRKMFETWYQVSAL  301 (341)
T ss_pred             HHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCcccccchhhhccceEEEEEecCCcchhHHHHHHH
Confidence            566666 468999999999877789999999999999999865443333333 356788888776533  5678899999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.+|.+++.++++.+++++++
T Consensus       302 l~~~~l~~~~~~~~~~~~~~~  322 (341)
T cd05281         302 LKSGKVDLSPVITHKLPLEDF  322 (341)
T ss_pred             HHcCCCChhHheEEEecHHHH
Confidence            999998766667777887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08269 Zn_ADH9 Alcohol dehydrogenases of the MDR family

Probab=99.10  E-value=7.8e-10  Score=71.92  Aligned_cols=101  Identities=19%  Similarity=0.374  Sum_probs=77.2

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-----CCC
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----~~~   76 (105)
                      ++.+.+.+.+ +.++|+++||+|....+..++++++++|+++.+|... .+..+++..+.+++.++.++...     .+.
T Consensus       185 ~~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~g~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  264 (312)
T cd08269         185 AIVERVRELTGGAGADVVIEAVGHQWPLDLAGELVAERGRLVIFGYHQDGPRPVPFQTWNWKGIDLINAVERDPRIGLEG  264 (312)
T ss_pred             CHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEccCCCCCcccCHHHHhhcCCEEEEecccCccchhhH
Confidence            3556677777 4689999999988766899999999999999998653 23445555667888888776543     357


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|++++..+++++|+++++
T Consensus       265 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~  292 (312)
T cd08269         265 MREAVKLIADGRLDLGSLLTHEFPLEEL  292 (312)
T ss_pred             HHHHHHHHHcCCCCchhheeeeecHHHH
Confidence            8999999999999654456678887754

The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent i

>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.10  E-value=6.8e-10  Score=73.26  Aligned_cols=95  Identities=16%  Similarity=0.186  Sum_probs=75.1

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF   83 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~   83 (105)
                      +.+.+++.  +++|+++|++|....+..++++++++|+++.+|......+++...++.+++++.++..+ ..++.+++++
T Consensus       219 ~~~~~~~~--~~~d~vi~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~  296 (333)
T cd08296         219 VAEALQEL--GGAKLILATAPNAKAISALVGGLAPRGKLLILGAAGEPVAVSPLQLIMGRKSIHGWPSGTALDSEDTLKF  296 (333)
T ss_pred             HHHHHHhc--CCCCEEEECCCchHHHHHHHHHcccCCEEEEEecCCCCCCcCHHHHhhcccEEEEeCcCCHHHHHHHHHH
Confidence            33444444  47999999998666799999999999999999976555556666677899999998766 6678899999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++  +++++ +||++|+
T Consensus       297 ~~~~~l--~~~v~-~~~~~~~  314 (333)
T cd08296         297 SALHGV--RPMVE-TFPLEKA  314 (333)
T ss_pred             HHhCCC--CceEE-EEEHHHH
Confidence            999988  55564 7999875

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal

>cd08292 ETR_like_2 2-enoyl thioester reductase (ETR) like proteins, child 2

Probab=99.10  E-value=1e-09  Score=71.77  Aligned_cols=98  Identities=20%  Similarity=0.242  Sum_probs=74.9

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc--------
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY--------   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~--------   73 (105)
                      ++.+.+.+.+ +.++|++|||+|+.. ...++++++++|+++.+|... ....+++.....++.++.++...        
T Consensus       195 ~~~~~i~~~~~~~~~d~v~d~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (324)
T cd08292         195 GWQDKVREAAGGAPISVALDSVGGKL-AGELLSLLGEGGTLVSFGSMSGEPMQISSGDLIFKQATVRGFWGGRWSQEMSV  273 (324)
T ss_pred             hHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHhhcCCcEEEEEecCCCCCCcCCHHHHhhCCCEEEEEEcHHhhhhcCH
Confidence            3556677777 469999999999975 899999999999999999653 23345555567789998887643        


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         ...+.++++++.+|++++  .+.++|+++++
T Consensus       274 ~~~~~~~~~~~~l~~~g~i~~--~~~~~~~~~~~  305 (324)
T cd08292         274 EYRKRMIAELLTLALKGQLLL--PVEAVFDLGDA  305 (324)
T ss_pred             HHHHHHHHHHHHHHHCCCccC--ccccEecHHHH
Confidence               235788999999999954  34678888764

2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordina

>cd08274 MDR9 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=99.10  E-value=3.1e-10  Score=75.05  Aligned_cols=91  Identities=22%  Similarity=0.378  Sum_probs=73.2

Q ss_pred             HHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcC
Q 040104           11 KAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSG   87 (105)
Q Consensus        11 ~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g   87 (105)
                      +.+ +.++|++||++|+.. +..++++++++|+++.+|....+ ..+++..++.++.++.++... ...+.++++++.++
T Consensus       237 ~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~  315 (350)
T cd08274         237 KALGGEPVDVVADVVGGPL-FPDLLRLLRPGGRYVTAGAIAGPVVELDLRTLYLKDLTLFGSTLGTREVFRRLVRYIEEG  315 (350)
T ss_pred             HhhCCCCCcEEEecCCHHH-HHHHHHHhccCCEEEEecccCCccccCCHHHhhhcceEEEEeecCCHHHHHHHHHHHHCC
Confidence            344 568999999999865 89999999999999999865433 456666667889999988776 67899999999999


Q ss_pred             CCCCCCceeeeeeCCCC
Q 040104           88 KIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        88 ~i~~~~~i~~~~~l~~~  104 (105)
                      ++  +++++++|+++++
T Consensus       316 ~l--~~~~~~~~~~~~~  330 (350)
T cd08274         316 EI--RPVVAKTFPLSEI  330 (350)
T ss_pred             Cc--ccccccccCHHHH
Confidence            98  4557778887753

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR01751 crot-CoA-red crotonyl-CoA reductase

Probab=99.09  E-value=5.2e-10  Score=75.59  Aligned_cols=97  Identities=18%  Similarity=0.210  Sum_probs=75.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      +.+.+.+.+ ++++|++|||+|+.. +..++++++++|+++.+|.... ...++...+..++.++.++... ..++.+++
T Consensus       268 ~~~~~~~~~~~~g~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  346 (398)
T TIGR01751       268 FGKRIRELTGGEDPDIVFEHPGRAT-FPTSVFVCRRGGMVVICGGTTGYNHDYDNRYLWMRQKRIQGSHFANLREAWEAN  346 (398)
T ss_pred             HHHHHHHHcCCCCceEEEECCcHHH-HHHHHHhhccCCEEEEEccccCCCCCcCHHHHhhcccEEEccccCcHHHHHHHH
Confidence            345566777 468999999999755 9999999999999999997543 2445556666788888887655 45678899


Q ss_pred             HHHHcCCCCCCCceeeeeeCCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++.+++++  +.++++++++++
T Consensus       347 ~~l~~~~l~--~~~~~~~~l~~~  367 (398)
T TIGR01751       347 RLVAKGRID--PTLSKVYPLEEI  367 (398)
T ss_pred             HHHHCCCcc--cceeeEEcHHHH
Confidence            999999984  557788998764

The enzyme modelled by this alignment is responsible for the conversion of crotonyl-CoA reductase to butyryl-CoA. In serine cycle methylotrophic bacteria this enzyme is involved in the process of acetyl-CoA to glyoxylate. In other bacteria the enzyme is used to produce butyrate for incorporation into polyketides such as tylosin from Streptomyces fradiae and coronatine from Pseudomonas syringae.

>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family

Probab=99.09  E-value=9.1e-10  Score=73.55  Aligned_cols=101  Identities=28%  Similarity=0.544  Sum_probs=76.9

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc--CCCHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY--KNTWP   78 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~--~~~~~   78 (105)
                      +..+++++.+ +.++|+++|++|+......++++++++|+++.+|....  ...++...++.+++++.+++..  +..++
T Consensus       243 ~~~~~l~~~~~~~~~d~vld~vg~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  322 (367)
T cd08263         243 DAVAAIREITGGRGVDVVVEALGKPETFKLALDVVRDGGRAVVVGLAPGGATAEIPITRLVRRGIKIIGSYGARPRQDLP  322 (367)
T ss_pred             cHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHhcCCEEEEEccCCCCCccccCHHHHhhCCeEEEecCCCCcHHHHH
Confidence            3455667666 56899999999987458999999999999999986542  2345555555788888886544  36789


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++++++.+++++.|+++++
T Consensus       323 ~~~~ll~~~~l~~~~~~~~~~~~~~~  348 (367)
T cd08263         323 ELVGLAASGKLDPEALVTHKYKLEEI  348 (367)
T ss_pred             HHHHHHHcCCCCcccceeEEecHHHH
Confidence            99999999999765557778887753

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu

>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family

Probab=99.07  E-value=1.3e-09  Score=71.87  Aligned_cols=100  Identities=30%  Similarity=0.551  Sum_probs=75.8

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      +.+.+.+.+ +.++|+++||+|+...+..++++++++|+++.+|....+..++...+..+++++.++... .+.+.++++
T Consensus       215 ~~~~l~~~~~~~~vd~vld~~g~~~~~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (337)
T cd08261         215 VAARLRELTDGEGADVVIDATGNPASMEEAVELVAHGGRVVLVGLSKGPVTFPDPEFHKKELTILGSRNATREDFPDVID  294 (337)
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEcCCCCCCccCHHHHHhCCCEEEEeccCChhhHHHHHH
Confidence            446666666 458999999998876689999999999999999865544444544556678888776544 668899999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|.+++.+.+..+|+++++
T Consensus       295 l~~~~~i~~~~~~~~~~~~~~~  316 (337)
T cd08261         295 LLESGKVDPEALITHRFPFEDV  316 (337)
T ss_pred             HHHcCCCChhhheEEEeeHHHH
Confidence            9999999653356668887653

This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,

>cd08235 iditol_2_DH_like L-iditol 2-dehydrogenase

Probab=99.07  E-value=1.3e-09  Score=71.90  Aligned_cols=100  Identities=30%  Similarity=0.486  Sum_probs=76.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +.+.+++.+ ++++|+++||+|+...+..++++++++|+++.+|....  ...++.....++++++.++... ...+.++
T Consensus       222 ~~~~i~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  301 (343)
T cd08235         222 LVEKVRELTDGRGADVVIVATGSPEAQAQALELVRKGGRILFFGGLPKGSTVNIDPNLIHYREITITGSYAASPEDYKEA  301 (343)
T ss_pred             HHHHHHHHhCCcCCCEEEECCCChHHHHHHHHHhhcCCEEEEEeccCCCCCcccCHHHHhhCceEEEEEecCChhhHHHH
Confidence            445666666 45899999999987668999999999999999986432  2344445567788888877665 6788999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.++++++.+.+..+|+++++
T Consensus       302 ~~l~~~~~l~~~~~~~~~~~~~~~  325 (343)
T cd08235         302 LELIASGKIDVKDLITHRFPLEDI  325 (343)
T ss_pred             HHHHHcCCCChHHheeeEeeHHHH
Confidence            999999998654456667887753

Putative L-iditol 2-dehydrogenase based on annotation of some members in this subgroup. L-iditol 2-dehydrogenase catalyzes the NAD+-dependent conversion of L-iditol to L-sorbose in fructose and mannose metabolism. This enzyme is related to sorbitol dehydrogenase, alcohol dehydrogenase, and other medium chain dehydrogenase/reductases. The zinc-dependent alcohol dehydrogenase (ADH-Zn)-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) to highlight its broad range of activities and to distinguish from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal GroES-like catalytic domain. The MDR group contains a host of activities, i

>cd08232 idonate-5-DH L-idonate 5-dehydrogenase

Probab=99.06  E-value=1.1e-09  Score=72.33  Aligned_cols=90  Identities=32%  Similarity=0.640  Sum_probs=71.5

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPL   94 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~   94 (105)
                      +++|+++|++|+...+...+++|+++|+++.+|....+...+...+..+++++.+.......+.++++++++|++++.++
T Consensus       230 ~~vd~vld~~g~~~~~~~~~~~L~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  309 (339)
T cd08232         230 GDFDVVFEASGAPAALASALRVVRPGGTVVQVGMLGGPVPLPLNALVAKELDLRGSFRFDDEFAEAVRLLAAGRIDVRPL  309 (339)
T ss_pred             CCccEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccCcHHHHhhcceEEEEEecCHHHHHHHHHHHHcCCCCchhh
Confidence            46999999999766689999999999999999864433334444456788888887666678899999999999876666


Q ss_pred             eeeeeeCCCC
Q 040104           95 VTHRFGFSQK  104 (105)
Q Consensus        95 i~~~~~l~~~  104 (105)
                      ++++|+++++
T Consensus       310 ~~~~~~~~~~  319 (339)
T cd08232         310 ITAVFPLEEA  319 (339)
T ss_pred             eeEEecHHHH
Confidence            7788988764

L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai

>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase

Probab=99.05  E-value=1.7e-09  Score=72.20  Aligned_cols=101  Identities=29%  Similarity=0.530  Sum_probs=77.2

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +...++++.+ ++++|+++|++|+...+..++++++++|+++.+|...  ....++...+..++..+.++...    ...
T Consensus       238 ~~~~~l~~~~~~~~vd~vld~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (363)
T cd08279         238 DAVEAVRDLTDGRGADYAFEAVGRAATIRQALAMTRKGGTAVVVGMGPPGETVSLPALELFLSEKRLQGSLYGSANPRRD  317 (363)
T ss_pred             cHHHHHHHHcCCCCCCEEEEcCCChHHHHHHHHHhhcCCeEEEEecCCCCcccccCHHHHhhcCcEEEEEEecCcCcHHH
Confidence            3445666666 5689999999997666899999999999999998654  23445555566677777776532    567


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++.+|++++.++++++|+++++
T Consensus       318 ~~~~~~l~~~g~l~~~~~~~~~~~~~~~  345 (363)
T cd08279         318 IPRLLDLYRAGRLKLDELVTRRYSLDEI  345 (363)
T ss_pred             HHHHHHHHHcCCCCcceeEEEEEcHHHH
Confidence            8899999999999765567778988764

Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me

>cd08299 alcohol_DH_class_I_II_IV class I, II, IV alcohol dehydrogenases

Probab=99.05  E-value=1.8e-09  Score=72.52  Aligned_cols=100  Identities=23%  Similarity=0.331  Sum_probs=73.9

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhh-hcCCEEEEEcCCCCCccccchh-hhhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~----~~~~~   78 (105)
                      ..+.+.+.+++++|+++||+|++..+..++..+ +++|+++.+|.......+++.. ++.++.++.++...    +..+.
T Consensus       249 ~~~~v~~~~~~~~d~vld~~g~~~~~~~~~~~~~~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~  328 (373)
T cd08299         249 IQEVLTEMTDGGVDFSFEVIGRLDTMKAALASCHEGYGVSVIVGVPPSSQNLSINPMLLLTGRTWKGAVFGGWKSKDSVP  328 (373)
T ss_pred             HHHHHHHHhCCCCeEEEECCCCcHHHHHHHHhhccCCCEEEEEccCCCCceeecCHHHHhcCCeEEEEEecCCccHHHHH
Confidence            455566666668999999999877688878766 5789999999754322333333 24567888887654    35778


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.+.++.++++++++++||++++
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~l~e~  354 (373)
T cd08299         329 KLVADYMAKKFNLDPLITHTLPFEKI  354 (373)
T ss_pred             HHHHHHHcCCCCchhheeeeecHHHH
Confidence            88888888888778788899999864

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group includes alcohol dehydrogenases corresponding to mammalian classes I, II, IV. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically

>cd05283 CAD1 Cinnamyl alcohol dehydrogenases (CAD)

Probab=99.05  E-value=7.6e-10  Score=73.14  Aligned_cols=88  Identities=22%  Similarity=0.305  Sum_probs=72.6

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      ++++|.++||+|....+..++++++++|+++.+|.......+++..++.+++++.++... .+.++++++++++|+++  
T Consensus       230 ~~~~d~v~~~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~--  307 (337)
T cd05283         230 AGSLDLIIDTVSASHDLDPYLSLLKPGGTLVLVGAPEEPLPVPPFPLIFGRKSVAGSLIGGRKETQEMLDFAAEHGIK--  307 (337)
T ss_pred             cCCceEEEECCCCcchHHHHHHHhcCCCEEEEEeccCCCCccCHHHHhcCceEEEEecccCHHHHHHHHHHHHhCCCc--
Confidence            468999999999875589999999999999999976544456666667899999998876 67899999999999984  


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                      +.+ ++|+++++
T Consensus       308 ~~~-~~~~~~~~  318 (337)
T cd05283         308 PWV-EVIPMDGI  318 (337)
T ss_pred             cce-EEEEHHHH
Confidence            455 57998764

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic

>cd05284 arabinose_DH_like D-arabinose dehydrogenase

Probab=99.05  E-value=2.7e-09  Score=70.36  Aligned_cols=96  Identities=24%  Similarity=0.444  Sum_probs=74.1

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      +.+++++.+ +.++|+++|++|+...+..++++++++|+++.+|..+. ..++....+.+++++.++... ...+.++++
T Consensus       223 ~~~~i~~~~~~~~~dvvld~~g~~~~~~~~~~~l~~~g~~i~~g~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (340)
T cd05284         223 VVEEVRELTGGRGADAVIDFVGSDETLALAAKLLAKGGRYVIVGYGGH-GRLPTSDLVPTEISVIGSLWGTRAELVEVVA  301 (340)
T ss_pred             HHHHHHHHhCCCCCCEEEEcCCCHHHHHHHHHHhhcCCEEEEEcCCCC-CccCHHHhhhcceEEEEEecccHHHHHHHHH
Confidence            445667666 45899999999986668999999999999999986543 334444445788999887665 778899999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|.+++  .+ ++|+++++
T Consensus       302 ~l~~g~l~~--~~-~~~~~~~~  320 (340)
T cd05284         302 LAESGKVKV--EI-TKFPLEDA  320 (340)
T ss_pred             HHHhCCCCc--ce-EEEeHHHH
Confidence            999999853  34 47888764

This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d

>cd05278 FDH_like Formaldehyde dehydrogenases

Probab=99.01  E-value=3.4e-09  Score=69.99  Aligned_cols=101  Identities=28%  Similarity=0.464  Sum_probs=73.3

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+.+++.+ ++++|+++|++|+...+..++++++++|+++.+|.......... ...+.+++++.++... ...+.++
T Consensus       223 ~~~~~i~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (347)
T cd05278         223 DIVEQILELTGGRGVDCVIEAVGFEETFEQAVKVVRPGGTIANVGVYGKPDPLPLLGEWFGKNLTFKTGLVPVRARMPEL  302 (347)
T ss_pred             hHHHHHHHHcCCCCCcEEEEccCCHHHHHHHHHHhhcCCEEEEEcCCCCCcccCccchhhhceeEEEeeccCchhHHHHH
Confidence            3456677666 46899999999985568999999999999999986543221112 1234577787776554 5789999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++++.+.+...|+++++
T Consensus       303 ~~~~~~~~l~~~~~~~~~~~~~~~  326 (347)
T cd05278         303 LDLIEEGKIDPSKLITHRFPLDDI  326 (347)
T ss_pred             HHHHHcCCCChhHcEEEEecHHHH
Confidence            999999999654445667887654

Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall

>PRK13771 putative alcohol dehydrogenase; Provisional

Probab=98.99  E-value=2.7e-09  Score=70.20  Aligned_cols=86  Identities=21%  Similarity=0.404  Sum_probs=68.0

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      ++|+++||+|+.. +..++++++++|+++.+|......  .++......+++++.+.+.. ++.++++++++++|.+  +
T Consensus       225 ~~d~~ld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~  301 (334)
T PRK13771        225 GADIVIETVGTPT-LEESLRSLNMGGKIIQIGNVDPSPTYSLRLGYIILKDIEIIGHISATKRDVEEALKLVAEGKI--K  301 (334)
T ss_pred             CCcEEEEcCChHH-HHHHHHHHhcCCEEEEEeccCCCCCcccCHHHHHhcccEEEEecCCCHHHHHHHHHHHHcCCC--c
Confidence            7999999999875 899999999999999999754322  23333445678888887655 7789999999999998  4


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                      +.++++|+++++
T Consensus       302 ~~~~~~~~~~~~  313 (334)
T PRK13771        302 PVIGAEVSLSEI  313 (334)
T ss_pred             ceEeeeEcHHHH
Confidence            557788998764

>KOG1198 consensus Zinc-binding oxidoreductase [Energy production and conversion; General function prediction only]

Probab=98.99  E-value=8.9e-10  Score=73.43  Aligned_cols=99  Identities=27%  Similarity=0.429  Sum_probs=68.1

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccch------------hhhhcCeEEEE
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLT------------PAAAREVDVVG   69 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~------------~~~~~~~~i~~   69 (105)
                      +++.+++++.+++++|+|+||+|+.. ...++.++..+|+...++...+ ....+..            ....++.....
T Consensus       212 ~~~~e~~kk~~~~~~DvVlD~vg~~~-~~~~~~~l~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (347)
T KOG1198|consen  212 ENVVELIKKYTGKGVDVVLDCVGGST-LTKSLSCLLKGGGGAYIGLVGDELANYKLDDLWQSANGIKLYSLGLKGVNYRW  290 (347)
T ss_pred             HHHHHHHHhhcCCCccEEEECCCCCc-cccchhhhccCCceEEEEeccccccccccccchhhhhhhhheeeeeeccceee
Confidence            57888888888779999999999986 8889999999887666654321 1111111            00111222211


Q ss_pred             eecc--CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           70 VFRY--KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        70 ~~~~--~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+..  .+.++.+.+++++|++  ++.+.++||++++
T Consensus       291 ~~~~~~~~~l~~l~~~ie~gki--kp~i~~~~p~~~~  325 (347)
T KOG1198|consen  291 LYFVPSAEYLKALVELIEKGKI--KPVIDSVYPFSQA  325 (347)
T ss_pred             eeecCCHHHHHHHHHHHHcCcc--cCCcceeeeHHHH
Confidence            1121  6778999999999977  8889999999875

>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members

Probab=98.97  E-value=4.3e-09  Score=69.12  Aligned_cols=88  Identities=32%  Similarity=0.583  Sum_probs=71.0

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      ++++|+++||+|....+..++++++++|+++.+|.......++...+..++.++.+++.. ...+.++++++++|.+++.
T Consensus       230 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~~  309 (338)
T cd08254         230 GGGFDVIFDFVGTQPTFEDAQKAVKPGGRIVVVGLGRDKLTVDLSDLIARELRIIGSFGGTPEDLPEVLDLIAKGKLDPQ  309 (338)
T ss_pred             CCCceEEEECCCCHHHHHHHHHHhhcCCEEEEECCCCCCCccCHHHHhhCccEEEEeccCCHHHHHHHHHHHHcCCCccc
Confidence            568999999999877799999999999999999875544455666677888888887766 7789999999999999643


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                         .+.|+++++
T Consensus       310 ---~~~~~~~~~  318 (338)
T cd08254         310 ---VETRPLDEI  318 (338)
T ss_pred             ---ceeEcHHHH
Confidence               457777653

This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio

>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases

Probab=98.95  E-value=9.8e-09  Score=67.83  Aligned_cols=99  Identities=34%  Similarity=0.637  Sum_probs=72.5

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccc---cchhhhhcCeEEEEeecc------CC
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV---PLTPAAAREVDVVGVFRY------KN   75 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~~~~~~i~~~~~~------~~   75 (105)
                      .+++.+.. +.++|+++||+|....+..++++++++|+++.+|.......+   .+..+..++.++.++...      ++
T Consensus       216 ~~~~~~~~~~~~~d~vld~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (343)
T cd08236         216 VEKVRELTEGRGADLVIEAAGSPATIEQALALARPGGKVVLVGIPYGDVTLSEEAFEKILRKELTIQGSWNSYSAPFPGD  295 (343)
T ss_pred             HHHHHHHhCCCCCCEEEECCCCHHHHHHHHHHhhcCCEEEEEcccCCCcccccCCHHHHHhcCcEEEEEeeccccccchh
Confidence            34555566 457999999998876689999999999999999965443222   233345778888877543      45


Q ss_pred             CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+.++++++++|++.+.+.+..+++++++
T Consensus       296 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  324 (343)
T cd08236         296 EWRTALDLLASGKIKVEPLITHRLPLEDG  324 (343)
T ss_pred             hHHHHHHHHHcCCCChHHheeeeecHHHH
Confidence            68889999999998544556677887754

This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=98.95  E-value=1.8e-09  Score=73.27  Aligned_cols=85  Identities=16%  Similarity=0.305  Sum_probs=72.6

Q ss_pred             CCcEEEEccCChHHHHHH-HHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CC-CHH--HHHHHHHcCCC-
Q 040104           16 GIDVSFDCAGFNKTMSTA-LSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KN-TWP--LCLEFLRSGKI-   89 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~-~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~-~~~--~~~~~v~~g~i-   89 (105)
                      ++|++|+|+|++..+... +.+++++|+++.+|..  +.+++...+..+++++.+++.+ .. .++  +.+.++++|++ 
T Consensus       257 ~aDVVI~atG~~~~i~~~~l~~mk~GgilvnvG~~--~~eId~~~L~~~el~i~g~~~~~~~~~~~~g~aI~LLa~Grlv  334 (413)
T cd00401         257 EGDIFVTTTGNKDIITGEHFEQMKDGAIVCNIGHF--DVEIDVKGLKENAVEVVNIKPQVDRYELPDGRRIILLAEGRLV  334 (413)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCCcEEEEeCCC--CCccCHHHHHhhccEEEEccCCcceEEcCCcchhhhhhCcCCC
Confidence            689999999999888876 9999999999999964  4568888888899999999887 33 566  79999999999 


Q ss_pred             CCCCceeee-----eeCC
Q 040104           90 DIKPLVTHR-----FGFS  102 (105)
Q Consensus        90 ~~~~~i~~~-----~~l~  102 (105)
                      ++...++|.     |+|+
T Consensus       335 nl~~~~gH~~~vmd~sf~  352 (413)
T cd00401         335 NLGCATGHPSFVMSNSFT  352 (413)
T ss_pred             CCcccCCCccceechhHH
Confidence            888888887     6665

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>cd08297 CAD3 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.94  E-value=7.2e-09  Score=68.42  Aligned_cols=98  Identities=21%  Similarity=0.320  Sum_probs=74.8

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +..+++.+.+ ++++|+++|+.+....+..++++++++|+++.+|..... ..++...++.++.++.+.... .+.++++
T Consensus       221 ~~~~~~~~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (341)
T cd08297         221 DDVEAVKELTGGGGAHAVVVTAVSAAAYEQALDYLRPGGTLVCVGLPPGGFIPLDPFDLVLRGITIVGSLVGTRQDLQEA  300 (341)
T ss_pred             cHHHHHHHHhcCCCCCEEEEcCCchHHHHHHHHHhhcCCEEEEecCCCCCCCCCCHHHHHhcccEEEEeccCCHHHHHHH
Confidence            3456677777 568999999887777799999999999999999965432 245555556889998886655 5788999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++  +.+ .+|+++++
T Consensus       301 ~~~~~~~~l~--~~~-~~~~~~~~  321 (341)
T cd08297         301 LEFAARGKVK--PHI-QVVPLEDL  321 (341)
T ss_pred             HHHHHcCCCc--cee-EEEcHHHH
Confidence            9999999984  344 46777653

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd05282 ETR_like 2-enoyl thioester reductase-like

Probab=98.93  E-value=1.5e-08  Score=66.25  Aligned_cols=98  Identities=16%  Similarity=0.345  Sum_probs=72.7

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc--------
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY--------   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~--------   73 (105)
                      +..+.+.+.+ +.++|.++||+|+.. ....+++++++|+++.+|.... +..++...+..++.++.+....        
T Consensus       194 ~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (323)
T cd05282         194 DLAQRVKEATGGAGARLALDAVGGES-ATRLARSLRPGGTLVNYGLLSGEPVPFPRSVFIFKDITVRGFWLRQWLHSATK  272 (323)
T ss_pred             hHHHHHHHHhcCCCceEEEECCCCHH-HHHHHHhhCCCCEEEEEccCCCCCCCCCHHHHhhcCceEEEEEehHhhccCCH
Confidence            3456677776 568999999999977 7788999999999999986543 2334544444588888876543        


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         ...+.++++++.+|+++  +.++++|+++++
T Consensus       273 ~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~~~  304 (323)
T cd05282         273 EAKQETFAEVIKLVEAGVLT--TPVGAKFPLEDF  304 (323)
T ss_pred             HHHHHHHHHHHHHHhCCCcc--cCccceecHHHH
Confidence               13577889999999984  446778888764

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossman

>cd08276 MDR7 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.91  E-value=1.1e-08  Score=67.09  Aligned_cols=98  Identities=19%  Similarity=0.341  Sum_probs=75.2

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +..+.+++.++ +++|.++|++|... +..++++++++|+++.+|..... ........+.+++++.++... ...++++
T Consensus       216 ~~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  294 (336)
T cd08276         216 DWGEEVLKLTGGRGVDHVVEVGGPGT-LAQSIKAVAPGGVISLIGFLSGFEAPVLLLPLLTKGATLRGIAVGSRAQFEAM  294 (336)
T ss_pred             CHHHHHHHHcCCCCCcEEEECCChHH-HHHHHHhhcCCCEEEEEccCCCCccCcCHHHHhhcceEEEEEecCcHHHHHHH
Confidence            34566777774 68999999998765 89999999999999999965432 234445567889999988765 6788999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.++.++  ++++++|+++++
T Consensus       295 ~~l~~~~~l~--~~~~~~~~~~~~  316 (336)
T cd08276         295 NRAIEAHRIR--PVIDRVFPFEEA  316 (336)
T ss_pred             HHHHHcCCcc--cccCcEEeHHHH
Confidence            9999998884  445667887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08234 threonine_DH_like L-threonine dehydrogenase

Probab=98.91  E-value=1.2e-08  Score=67.09  Aligned_cols=91  Identities=31%  Similarity=0.537  Sum_probs=70.4

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDI   91 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~   91 (105)
                      ++++|+++||+|....+..++++++++|+++.+|....  ...++...+..+++++.+.......++++++++.++++++
T Consensus       224 ~~~vd~v~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  303 (334)
T cd08234         224 PYGFDVVIEATGVPKTLEQAIEYARRGGTVLVFGVYAPDARVSISPFEIFQKELTIIGSFINPYTFPRAIALLESGKIDV  303 (334)
T ss_pred             CCCCcEEEECCCChHHHHHHHHHHhcCCEEEEEecCCCCCCcccCHHHHHhCCcEEEEeccCHHHHHHHHHHHHcCCCCh
Confidence            56899999999877668999999999999999986542  2334433445578888887655667899999999999976


Q ss_pred             CCceeeeeeCCCC
Q 040104           92 KPLVTHRFGFSQK  104 (105)
Q Consensus        92 ~~~i~~~~~l~~~  104 (105)
                      .++++++|+++++
T Consensus       304 ~~~~~~~~~~~~~  316 (334)
T cd08234         304 KGLVSHRLPLEEV  316 (334)
T ss_pred             hhhEEEEecHHHH
Confidence            5556778887654

L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.

>cd08293 PTGR2 Prostaglandin reductase

Probab=98.90  E-value=1.2e-08  Score=67.48  Aligned_cols=98  Identities=18%  Similarity=0.297  Sum_probs=64.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC---CCcc----ccc--hhhh-hcCeEEEEeecc
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH---HEMT----VPL--TPAA-AREVDVVGVFRY   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~---~~~~----~~~--~~~~-~~~~~i~~~~~~   73 (105)
                      ++.+.+++.+++|+|++||++|+.. +..++++++++|+++.+|...   .+..    +..  ..+. .++++..+....
T Consensus       212 ~~~~~i~~~~~~gvd~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  290 (345)
T cd08293         212 NVAERLRELCPEGVDVYFDNVGGEI-SDTVISQMNENSHIILCGQISQYNKDVPYPPPLPEATEAILKERNITRERFLVL  290 (345)
T ss_pred             CHHHHHHHHCCCCceEEEECCCcHH-HHHHHHHhccCCEEEEEeeeecccCccCccccccchhHHHhhhcceEEEEEEee
Confidence            4566777777778999999999976 899999999999999998532   1111    111  1111 233333322211


Q ss_pred             ------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                            ...++++++++++|++++.  +..++||+++
T Consensus       291 ~~~~~~~~~~~~~~~l~~~g~i~~~--~~~~~~l~~~  325 (345)
T cd08293         291 NYKDKFEEAIAQLSQWVKEGKLKVK--ETVYEGLENA  325 (345)
T ss_pred             ccHhHHHHHHHHHHHHHHCCCccce--eEEeecHHHH
Confidence                  2346778899999999543  4445688764

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid

>cd08264 Zn_ADH_like2 Alcohol dehydrogenases of the MDR family

Probab=98.90  E-value=9e-09  Score=67.50  Aligned_cols=92  Identities=17%  Similarity=0.237  Sum_probs=70.6

Q ss_pred             HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHHHHHH
Q 040104            7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFL   84 (105)
Q Consensus         7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v   84 (105)
                      +.+++.+ +++|+++|++|+. .+..++++++++|+++.+|... ....+++..+..++.++.++..+ ++.++++++++
T Consensus       215 ~~l~~~~-~~~d~vl~~~g~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  292 (325)
T cd08264         215 EKVKEIT-KMADVVINSLGSS-FWDLSLSVLGRGGRLVTFGTLTGGEVKLDLSDLYSKQISIIGSTGGTRKELLELVKIA  292 (325)
T ss_pred             HHHHHHh-CCCCEEEECCCHH-HHHHHHHhhccCCEEEEEecCCCCCCccCHHHHhhcCcEEEEccCCCHHHHHHHHHHH
Confidence            4455555 6899999999986 5999999999999999999642 23456666777788888888766 67889999999


Q ss_pred             HcCCCCCCCceeeeeeCCCC
Q 040104           85 RSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        85 ~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ...+    ..++++||++++
T Consensus       293 ~~~~----~~~~~~~~~~~~  308 (325)
T cd08264         293 KDLK----VKVWKTFKLEEA  308 (325)
T ss_pred             HcCC----ceeEEEEcHHHH
Confidence            5433    345678888764

This group resembles the zinc-dependent alcohol dehydrogenases of the medium chain dehydrogenase family. However, this subgroup does not contain the characteristic catalytic zinc site. Also, it contains an atypical structural zinc-binding pattern: DxxCxxCxxxxxxxC. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the clo

>cd08244 MDR_enoyl_red Possible enoyl reductase

Probab=98.88  E-value=1.3e-08  Score=66.57  Aligned_cols=98  Identities=22%  Similarity=0.318  Sum_probs=73.0

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------C
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------K   74 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~   74 (105)
                      +..+.+.+.+ ++++|+++|++|+.. ...++++++++|+++.+|.... ...++...++.++.++.++...       .
T Consensus       198 ~~~~~~~~~~~~~~~d~vl~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (324)
T cd08244         198 DWPDQVREALGGGGVTVVLDGVGGAI-GRAALALLAPGGRFLTYGWASGEWTALDEDDARRRGVTVVGLLGVQAERGGLR  276 (324)
T ss_pred             cHHHHHHHHcCCCCceEEEECCChHh-HHHHHHHhccCcEEEEEecCCCCCCccCHHHHhhCCcEEEEeecccCCHHHHH
Confidence            3445666666 458999999999986 7999999999999999987543 2244444556788888876543       2


Q ss_pred             CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ..+.++++++.++++  +++++++|+++++
T Consensus       277 ~~~~~~~~~l~~~~l--~~~~~~~~~~~~~  304 (324)
T cd08244         277 ALEARALAEAAAGRL--VPVVGQTFPLERA  304 (324)
T ss_pred             HHHHHHHHHHHCCCc--cCccceEEeHHHH
Confidence            457778899999988  4557778888764

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydr

>cd05288 PGDH Prostaglandin dehydrogenases

Probab=98.85  E-value=1.5e-08  Score=66.44  Aligned_cols=98  Identities=21%  Similarity=0.318  Sum_probs=70.4

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-c-----cccchhhhhcCeEEEEeecc----
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-M-----TVPLTPAAAREVDVVGVFRY----   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~-----~~~~~~~~~~~~~i~~~~~~----   73 (105)
                      +..+++.+.+++++|+++||+|+.. +..++++++++|+++.+|..... .     .++......++.++.++...    
T Consensus       202 ~~~~~v~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (329)
T cd05288         202 DLAEALKEAAPDGIDVYFDNVGGEI-LDAALTLLNKGGRIALCGAISQYNATEPPGPKNLGNIITKRLTMQGFIVSDYAD  280 (329)
T ss_pred             hHHHHHHHhccCCceEEEEcchHHH-HHHHHHhcCCCceEEEEeeccCcccccccccccHHHHhhCcceEEeecchhhHH
Confidence            3445566666668999999999865 99999999999999999864321 1     12344456788888876543    


Q ss_pred             --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                        ...+.++++++.+|.+++.+  ..+++++++
T Consensus       281 ~~~~~~~~~~~~~~~g~i~~~~--~~~~~l~~~  311 (329)
T cd05288         281 RFPEALAELAKWLAEGKLKYRE--DVVEGLENA  311 (329)
T ss_pred             HHHHHHHHHHHHHHCCCccccc--cccccHHHH
Confidence              24578899999999996543  335677653

Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino

>PRK09422 ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional

Probab=98.85  E-value=2e-08  Score=66.24  Aligned_cols=96  Identities=23%  Similarity=0.329  Sum_probs=71.3

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEF   83 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~   83 (105)
                      ..+.+++.++ ++|.++++.++...+..++++++.+|+++.+|.......++...+..++.++.++..+ ++.+++++++
T Consensus       220 ~~~~v~~~~~-~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  298 (338)
T PRK09422        220 VAKIIQEKTG-GAHAAVVTAVAKAAFNQAVDAVRAGGRVVAVGLPPESMDLSIPRLVLDGIEVVGSLVGTRQDLEEAFQF  298 (338)
T ss_pred             HHHHHHHhcC-CCcEEEEeCCCHHHHHHHHHhccCCCEEEEEeeCCCCceecHHHHhhcCcEEEEecCCCHHHHHHHHHH
Confidence            3455666655 7896555555566699999999999999999976544455555667788888887655 6778999999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.+|+++  +.++ .++++++
T Consensus       299 ~~~g~l~--~~v~-~~~~~~~  316 (338)
T PRK09422        299 GAEGKVV--PKVQ-LRPLEDI  316 (338)
T ss_pred             HHhCCCC--ccEE-EEcHHHH
Confidence            9999884  4565 5787654

>cd08266 Zn_ADH_like1 Alcohol dehydrogenases of the MDR family

Probab=98.82  E-value=3.5e-08  Score=64.65  Aligned_cols=97  Identities=21%  Similarity=0.344  Sum_probs=73.3

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      ..+.+.+.+ ++++|.+++++|... +..++++++++|+++.+|.... ...++....+.++.++.+.... ...+.+++
T Consensus       223 ~~~~~~~~~~~~~~d~~i~~~g~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  301 (342)
T cd08266         223 FVREVRELTGKRGVDVVVEHVGAAT-WEKSLKSLARGGRLVTCGATTGYEAPIDLRHVFWRQLSILGSTMGTKAELDEAL  301 (342)
T ss_pred             HHHHHHHHhCCCCCcEEEECCcHHH-HHHHHHHhhcCCEEEEEecCCCCCCCcCHHHHhhcceEEEEEecCCHHHHHHHH
Confidence            445555555 458999999999865 8999999999999999986543 2234443456788888887665 56788899


Q ss_pred             HHHHcCCCCCCCceeeeeeCCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++.++.+  +++++++|+++++
T Consensus       302 ~~l~~~~l--~~~~~~~~~~~~~  322 (342)
T cd08266         302 RLVFRGKL--KPVIDSVFPLEEA  322 (342)
T ss_pred             HHHHcCCc--ccceeeeEcHHHH
Confidence            99999988  4567778887654

This group contains proteins related to the zinc-dependent alcohol dehydrogenases. However, while the group has structural zinc site characteristic of these enzymes, it lacks the consensus site for a catalytic zinc. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone

>cd08290 ETR 2-enoyl thioester reductase (ETR)

Probab=98.78  E-value=5.4e-08  Score=64.24  Aligned_cols=98  Identities=16%  Similarity=0.257  Sum_probs=70.8

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc--C------
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY--K------   74 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~--~------   74 (105)
                      +..+.+++.+++++|.++||+|+.. +..++++++++|+++.+|... .+..++....+.++.++.+....  .      
T Consensus       209 ~~~~~i~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (341)
T cd08290         209 LATELLKSAPGGRPKLALNCVGGKS-ATELARLLSPGGTMVTYGGMSGQPVTVPTSLLIFKDITLRGFWLTRWLKRANPE  287 (341)
T ss_pred             cHHHHHHHHcCCCceEEEECcCcHh-HHHHHHHhCCCCEEEEEeccCCCCcccCHHHHhhCCceEEEEecHHHHhhcCHH
Confidence            3455566666448999999999976 788999999999999998643 23345554557888998887643  1      


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCceeeee---eCCCC
Q 040104           75 ---NTWPLCLEFLRSGKIDIKPLVTHRF---GFSQK  104 (105)
Q Consensus        75 ---~~~~~~~~~v~~g~i~~~~~i~~~~---~l~~~  104 (105)
                         ..+.++++++.+|++++.  ...+|   +++++
T Consensus       288 ~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~  321 (341)
T cd08290         288 EKEDMLEELAELIREGKLKAP--PVEKVTDDPLEEF  321 (341)
T ss_pred             HHHHHHHHHHHHHHcCCccCC--cccccccCCHHHH
Confidence               247889999999998543  44455   77653

2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann f

>PRK10754 quinone oxidoreductase, NADPH-dependent; Provisional

Probab=98.76  E-value=1.9e-08  Score=66.03  Aligned_cols=100  Identities=16%  Similarity=0.256  Sum_probs=66.2

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCe------EEEEeecc--
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREV------DVVGVFRY--   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~------~i~~~~~~--   73 (105)
                      +..+.+++.+ ++++|+++||+|+.. ...++++++++|+++.+|..... ..++...+..++.      .+.+....  
T Consensus       196 ~~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (327)
T PRK10754        196 NIVERVKEITGGKKVRVVYDSVGKDT-WEASLDCLQRRGLMVSFGNASGPVTGVNLGILNQKGSLYVTRPSLQGYITTRE  274 (327)
T ss_pred             cHHHHHHHHcCCCCeEEEEECCcHHH-HHHHHHHhccCCEEEEEccCCCCCCCcCHHHHhccCceEEecceeecccCCHH
Confidence            3556677777 468999999999865 88999999999999999965422 2233332222221      12222111  


Q ss_pred             --CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                        ...+.++++++.+|++++..++.++||++++
T Consensus       275 ~~~~~~~~~~~~l~~g~l~~~~~~~~~~~~~~~  307 (327)
T PRK10754        275 ELTEASNELFSLIASGVIKVDVAEQQKFPLKDA  307 (327)
T ss_pred             HHHHHHHHHHHHHHCCCeeeecccCcEEcHHHH
Confidence              2234568899999999755556778998764

>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]

Probab=98.76  E-value=3.2e-08  Score=64.29  Aligned_cols=89  Identities=17%  Similarity=0.334  Sum_probs=70.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-----CCccc-cchhhhhcCeEEEEeecc----
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-----HEMTV-PLTPAAAREVDVVGVFRY----   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-----~~~~~-~~~~~~~~~~~i~~~~~~----   73 (105)
                      +..+++++..++|+|+.||.+|+.. ++..+..++.+||++.+|.-+     .+..+ +....+.|++++.|+...    
T Consensus       211 ~~~~aL~r~~P~GIDiYfeNVGG~~-lDavl~nM~~~gri~~CG~ISqYN~~~~~~~~~l~~ii~Kr~~iqgflv~d~~d  289 (343)
T KOG1196|consen  211 DLSAALKRCFPEGIDIYFENVGGKM-LDAVLLNMNLHGRIAVCGMISQYNLENPEGLHNLSTIIYKRIRIQGFLVSDYLD  289 (343)
T ss_pred             CHHHHHHHhCCCcceEEEeccCcHH-HHHHHHhhhhccceEeeeeehhccccCCccccchhhheeeeEEeeeEEeechhh
Confidence            5667888877899999999999987 999999999999999999632     22222 234457899999998754    


Q ss_pred             --CCCHHHHHHHHHcCCCCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~   93 (105)
                        .+.+..+..++.+|+|+...
T Consensus       290 ~~~k~ld~l~~~ikegKI~y~e  311 (343)
T KOG1196|consen  290 KYPKFLDFLLPYIKEGKITYVE  311 (343)
T ss_pred             hhHHHHHHHHHHHhcCceEEeh
Confidence              45567788999999996543

>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members

Probab=98.75  E-value=6.1e-08  Score=62.29  Aligned_cols=88  Identities=27%  Similarity=0.437  Sum_probs=64.2

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc-------------CCCHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY-------------KNTWPL   79 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~-------------~~~~~~   79 (105)
                      ++++|.+||++|....+..++++++++|+++.+|..... .... ..+..+..++.+....             .+.+++
T Consensus       157 ~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~~~~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (277)
T cd08255         157 GRGADVVIEASGSPSALETALRLLRDRGRVVLVGWYGLK-PLLLGEEFHFKRLPIRSSQVYGIGRYDRPRRWTEARNLEE  235 (277)
T ss_pred             CCCCCEEEEccCChHHHHHHHHHhcCCcEEEEEeccCCC-ccccHHHHHhccCeEEeecccccccccccccccccccHHH
Confidence            458999999999877789999999999999999975543 2221 2344455566555322             256899


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++.+|++  ++++.++|+++++
T Consensus       236 ~~~l~~~~~l--~~~~~~~~~~~~~  258 (277)
T cd08255         236 ALDLLAEGRL--EALITHRVPFEDA  258 (277)
T ss_pred             HHHHHHcCCc--cccccCccCHHHH
Confidence            9999999987  5556778887764

This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD

>KOG0025 consensus Zn2+-binding dehydrogenase (nuclear receptor binding factor-1) [Transcription; Energy production and conversion]

Probab=98.75  E-value=7.6e-08  Score=62.38  Aligned_cols=86  Identities=14%  Similarity=0.255  Sum_probs=69.9

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC-CCCCccccchhhhhcCeEEEEeecc--------C----CCHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM-GHHEMTVPLTPAAAREVDVVGVFRY--------K----NTWPLCL   81 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~-~~~~~~~~~~~~~~~~~~i~~~~~~--------~----~~~~~~~   81 (105)
                      .++-..++|+|+-. -.+..+.|..||+++.+|. +..+.+++...++||++.++|+|..        +    +.+.++.
T Consensus       232 ~~prLalNcVGGks-a~~iar~L~~GgtmvTYGGMSkqPv~~~ts~lIFKdl~~rGfWvt~W~~~~~~pe~~~~~i~~~~  310 (354)
T KOG0025|consen  232 PRPRLALNCVGGKS-ATEIARYLERGGTMVTYGGMSKQPVTVPTSLLIFKDLKLRGFWVTRWKKEHKSPEERKEMIDELC  310 (354)
T ss_pred             CCceEEEeccCchh-HHHHHHHHhcCceEEEecCccCCCcccccchheeccceeeeeeeeehhhccCCcHHHHHHHHHHH
Confidence            46889999999987 7888999999999999986 4478889999999999999999964        1    3467788


Q ss_pred             HHHHcCCCCCCCceeeeeeCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                      +++..|+|..  .-....||++
T Consensus       311 ~l~~~G~i~~--~~~e~v~L~~  330 (354)
T KOG0025|consen  311 DLYRRGKLKA--PNCEKVPLAD  330 (354)
T ss_pred             HHHHcCeecc--ccceeeechh
Confidence            9999999953  2334567665

>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR)

Probab=98.73  E-value=5.4e-08  Score=63.34  Aligned_cols=96  Identities=20%  Similarity=0.335  Sum_probs=67.9

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccc---cchhhh--hcCeEEEEeecc---CCC
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTV---PLTPAA--AREVDVVGVFRY---KNT   76 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~---~~~~~~--~~~~~i~~~~~~---~~~   76 (105)
                      ..+.+++. ++++|.++|++|+.. +..++++++++|+++.+|........   ....+.  .+++++.++...   ...
T Consensus       198 ~~~~i~~~-~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (320)
T cd08243         198 IAEQLRAA-PGGFDKVLELVGTAT-LKDSLRHLRPGGIVCMTGLLGGQWTLEDFNPMDDIPSGVNLTLTGSSSGDVPQTP  275 (320)
T ss_pred             HHHHHHHh-CCCceEEEECCChHH-HHHHHHHhccCCEEEEEccCCCCcccCCcchhhhhhhccceEEEecchhhhhHHH
Confidence            34556666 678999999999865 99999999999999999964322211   112222  566777666543   345


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.++++++.++.++  ++.+++|+++++
T Consensus       276 ~~~~~~~~~~~~~~--~~~~~~~~l~~~  301 (320)
T cd08243         276 LQELFDFVAAGHLD--IPPSKVFTFDEI  301 (320)
T ss_pred             HHHHHHHHHCCcee--cccccEEcHHHH
Confidence            78899999999884  446678888764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.

>PTZ00354 alcohol dehydrogenase; Provisional

Probab=98.73  E-value=1.3e-07  Score=62.00  Aligned_cols=97  Identities=18%  Similarity=0.303  Sum_probs=70.4

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Ccc-ccchhhhhcCeEEEEeeccC-------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMT-VPLTPAAAREVDVVGVFRYK-------   74 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~-~~~~~~~~~~~~i~~~~~~~-------   74 (105)
                      ..+++++.+ +.++|+++|++|+.. +..++++++++|+++.+|...+ ... ++...+..++.++.++....       
T Consensus       198 ~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (334)
T PTZ00354        198 FAPKVKKLTGEKGVNLVLDCVGGSY-LSETAEVLAVDGKWIVYGFMGGAKVEKFNLLPLLRKRASIIFSTLRSRSDEYKA  276 (334)
T ss_pred             HHHHHHHHhCCCCceEEEECCchHH-HHHHHHHhccCCeEEEEecCCCCcccccCHHHHHhhCCEEEeeeccccchhhhH
Confidence            556777777 468999999998765 8999999999999999986432 222 55555566777888765431       


Q ss_pred             ----CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 ----NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ----~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          ..++++++++.++.++  +++++.|+++++
T Consensus       277 ~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~  308 (334)
T PTZ00354        277 DLVASFEREVLPYMEEGEIK--PIVDRTYPLEEV  308 (334)
T ss_pred             HHHHHHHHHHHHHHHCCCcc--CccccEEcHHHH
Confidence                2246788899999884  456677887653

>cd08270 MDR4 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.68  E-value=6.9e-08  Score=62.69  Aligned_cols=88  Identities=20%  Similarity=0.322  Sum_probs=66.3

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccchhhhh--cCeEEEEeecc-----CCCHHHHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAA--REVDVVGVFRY-----KNTWPLCLEFLR   85 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~--~~~~i~~~~~~-----~~~~~~~~~~v~   85 (105)
                      ++++|+++|++|+.. +..++++++++|+++.+|.... ...++...+..  ++.++.++...     ...+..+++++.
T Consensus       190 ~~~~d~vl~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (305)
T cd08270         190 GAPVDLVVDSVGGPQ-LARALELLAPGGTVVSVGSSSGEPAVFNPAAFVGGGGGRRLYTFFLYDGEPLAADLARLLGLVA  268 (305)
T ss_pred             CCCceEEEECCCcHH-HHHHHHHhcCCCEEEEEeccCCCcccccHHHHhcccccceEEEEEccCHHHHHHHHHHHHHHHH
Confidence            347999999999875 8999999999999999986542 23344444444  58888877643     356888999999


Q ss_pred             cCCCCCCCceeeeeeCCCC
Q 040104           86 SGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        86 ~g~i~~~~~i~~~~~l~~~  104 (105)
                      +|+++  +.+.++++++++
T Consensus       269 ~~~i~--~~~~~~~~~~~~  285 (305)
T cd08270         269 AGRLD--PRIGWRGSWTEI  285 (305)
T ss_pred             CCCcc--ceeccEEcHHHH
Confidence            99995  346678887654

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08259 Zn_ADH5 Alcohol dehydrogenases of the MDR family

Probab=98.65  E-value=1.8e-07  Score=61.28  Aligned_cols=86  Identities=21%  Similarity=0.399  Sum_probs=66.6

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~~   93 (105)
                      ++|++++++|... ...++++++++|+++.+|..... ..++.....+++..+.++... ...+.++++++.+|.+  ++
T Consensus       226 ~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l--~~  302 (332)
T cd08259         226 GADVVIELVGSPT-IEESLRSLNKGGRLVLIGNVTPDPAPLRPGLLILKEIRIIGSISATKADVEEALKLVKEGKI--KP  302 (332)
T ss_pred             CCCEEEECCChHH-HHHHHHHhhcCCEEEEEcCCCCCCcCCCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHcCCC--cc
Confidence            7999999999877 89999999999999999865432 223333344677787777655 6778899999999988  55


Q ss_pred             ceeeeeeCCCC
Q 040104           94 LVTHRFGFSQK  104 (105)
Q Consensus        94 ~i~~~~~l~~~  104 (105)
                      +++++|+++++
T Consensus       303 ~~~~~~~~~~~  313 (332)
T cd08259         303 VIDRVVSLEDI  313 (332)
T ss_pred             ceeEEEcHHHH
Confidence            67788988764

NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. This group contains proteins that share the characteristic catalytic and structural zinc-binding sites of the zinc-dependent alcohol dehydrogenase family. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES.

>TIGR02823 oxido_YhdH putative quinone oxidoreductase, YhdH/YhfP family

Probab=98.64  E-value=3.7e-07  Score=59.79  Aligned_cols=92  Identities=15%  Similarity=0.261  Sum_probs=64.9

Q ss_pred             HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---C----CCHHHH
Q 040104            9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---K----NTWPLC   80 (105)
Q Consensus         9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~----~~~~~~   80 (105)
                      +++..++++|.++||+|+.. +..++++++++|+++.+|.... ...++...+..+++++.+....   .    ..+.++
T Consensus       204 ~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (323)
T TIGR02823       204 GKPLEKERWAGAVDTVGGHT-LANVLAQLKYGGAVAACGLAGGPDLPTTVLPFILRGVSLLGIDSVYCPMALREAAWQRL  282 (323)
T ss_pred             HHHhcCCCceEEEECccHHH-HHHHHHHhCCCCEEEEEcccCCCCccccHHHHhhcceEEEEEeccccCchhHHHHHHHH
Confidence            44444446999999999876 8999999999999999997542 2334445555788888886533   1    135566


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+++..+.+  .++ .++||++++
T Consensus       283 ~~~~~~~~~--~~~-~~~~~l~~~  303 (323)
T TIGR02823       283 ATDLKPRNL--ESI-TREITLEEL  303 (323)
T ss_pred             HHHhhcCCC--cCc-eeeecHHHH
Confidence            667778877  333 448888764

This model represents a subfamily of pfam00107 as defined by Pfam, a superfamily in which some members are zinc-binding medium-chain alcohol dehydrogenases while others are quinone oxidoreductases with no bound zinc. This subfamily includes proteins studied crystallographically for insight into function: YhdH from Escherichia coli and YhfP from Bacillus subtilis. Members bind NADPH or NAD, but not zinc.

>cd05276 p53_inducible_oxidoreductase PIG3 p53-inducible quinone oxidoreductase

Probab=98.63  E-value=4.5e-07  Score=58.75  Aligned_cols=97  Identities=22%  Similarity=0.411  Sum_probs=70.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-C-------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-K-------   74 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~-------   74 (105)
                      ..+.+.+.+ ++++|+++|++|+.. ...++.+++++|+++.+|.... ...++...++.+++++.++... .       
T Consensus       196 ~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (323)
T cd05276         196 FAEEVKEATGGRGVDVILDMVGGDY-LARNLRALAPDGRLVLIGLLGGAKAELDLAPLLRKRLTLTGSTLRSRSLEEKAA  274 (323)
T ss_pred             HHHHHHHHhCCCCeEEEEECCchHH-HHHHHHhhccCCEEEEEecCCCCCCCCchHHHHHhCCeEEEeeccchhhhccHH
Confidence            445566665 468999999999877 8889999999999999986432 2334444555688888877643 1       


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 ---NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         ..+.++++++.++++  +++.++.|+++++
T Consensus       275 ~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  305 (323)
T cd05276         275 LAAAFREHVWPLFASGRI--RPVIDKVFPLEEA  305 (323)
T ss_pred             HHHHHHHHHHHHHHCCCc--cCCcceEEcHHHH
Confidence               125678889999988  4456778887754

PIG3 p53-inducible quinone oxidoreductase, a medium chain dehydrogenase/reductase family member, acts in the apoptotic pathway. PIG3 reduces ortho-quinones, but its apoptotic activity has been attributed to oxidative stress generation, since overexpression of PIG3 accumulates reactive oxygen species. PIG3 resembles the MDR family member quinone reductases, which catalyze the reduction of quinone to hydroxyquinone. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding

>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional

Probab=98.61  E-value=2.6e-07  Score=64.41  Aligned_cols=82  Identities=13%  Similarity=0.249  Sum_probs=64.2

Q ss_pred             CCCcEEEEccCCh-----HHH-HHHHHhhhcCCEEEEEcCC-CCC--ccccchhhhh-cCeEEEEeeccCCCHH-HHHHH
Q 040104           15 TGIDVSFDCAGFN-----KTM-STALSATRAGGKVCLVGMG-HHE--MTVPLTPAAA-REVDVVGVFRYKNTWP-LCLEF   83 (105)
Q Consensus        15 ~g~d~vid~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~-~~~--~~~~~~~~~~-~~~~i~~~~~~~~~~~-~~~~~   83 (105)
                      +++|++|+|+|.+     .++ +++++.+++||+++.+|.. .++  .+++...++. +++++.|+...+..++ ++.++
T Consensus       247 ~gaDVVIetag~pg~~aP~lit~~~v~~mkpGgvIVdvg~~~GG~~e~t~~~~~v~~~~gVti~Gv~n~P~~~p~~As~l  326 (509)
T PRK09424        247 KEVDIIITTALIPGKPAPKLITAEMVASMKPGSVIVDLAAENGGNCELTVPGEVVVTDNGVTIIGYTDLPSRLPTQSSQL  326 (509)
T ss_pred             CCCCEEEECCCCCcccCcchHHHHHHHhcCCCCEEEEEccCCCCCcccccCccceEeECCEEEEEeCCCchhHHHHHHHH
Confidence            4799999999963     354 9999999999999999985 343  3444455555 8999999887755666 59999


Q ss_pred             HHcCCCCCCCcee
Q 040104           84 LRSGKIDIKPLVT   96 (105)
Q Consensus        84 v~~g~i~~~~~i~   96 (105)
                      ++++.+++.++++
T Consensus       327 la~~~i~l~~lIt  339 (509)
T PRK09424        327 YGTNLVNLLKLLC  339 (509)
T ss_pred             HHhCCccHHHHhc
Confidence            9999887766666

>cd08241 QOR1 Quinone oxidoreductase (QOR)

Probab=98.61  E-value=3e-07  Score=59.66  Aligned_cols=96  Identities=26%  Similarity=0.497  Sum_probs=69.3

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc-ccchhhhhcCeEEEEeecc---------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT-VPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ..+.+.+.+ ++++|.+++++|+.. ...++++++++|+++.+|....... ++......++.++.+....         
T Consensus       196 ~~~~i~~~~~~~~~d~v~~~~g~~~-~~~~~~~~~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (323)
T cd08241         196 LRERVKALTGGRGVDVVYDPVGGDV-FEASLRSLAWGGRLLVIGFASGEIPQIPANLLLLKNISVVGVYWGAYARREPEL  274 (323)
T ss_pred             HHHHHHHHcCCCCcEEEEECccHHH-HHHHHHhhccCCEEEEEccCCCCcCcCCHHHHhhcCcEEEEEecccccchhHHH
Confidence            445666666 468999999999854 8899999999999999987543322 3333445678888876533         


Q ss_pred             -CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                       ...+.++++++.++.+  .++.++.|++++
T Consensus       275 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  303 (323)
T cd08241         275 LRANLAELFDLLAEGKI--RPHVSAVFPLEQ  303 (323)
T ss_pred             HHHHHHHHHHHHHCCCc--ccccceEEcHHH
Confidence             1356778899999988  455677787664

QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic

>cd08250 Mgc45594_like Mgc45594 gene product and other MDR family members

Probab=98.60  E-value=2.2e-07  Score=61.00  Aligned_cols=96  Identities=21%  Similarity=0.291  Sum_probs=66.7

Q ss_pred             HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-----------ccccchhhhhcCeEEEEeecc--
Q 040104            7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-----------MTVPLTPAAAREVDVVGVFRY--   73 (105)
Q Consensus         7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------~~~~~~~~~~~~~~i~~~~~~--   73 (105)
                      +.+....++++|.++|++|+.. +..++++++++|+++.+|.....           ..++ ...+.++.++.++...  
T Consensus       198 ~~~~~~~~~~vd~v~~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~  275 (329)
T cd08250         198 EVLKKEYPKGVDVVYESVGGEM-FDTCVDNLALKGRLIVIGFISGYQSGTGPSPVKGATLP-PKLLAKSASVRGFFLPHY  275 (329)
T ss_pred             HHHHHhcCCCCeEEEECCcHHH-HHHHHHHhccCCeEEEEecccCCcccCccccccccccc-HHHhhcCceEEEEEhHHH
Confidence            4444444568999999999754 89999999999999999865321           0111 2235677888876543  


Q ss_pred             ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          ...+.++++++.+|.+++.....++|+++++
T Consensus       276 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  310 (329)
T cd08250         276 AKLIPQHLDRLLQLYQRGKLVCEVDPTRFRGLESV  310 (329)
T ss_pred             HHHHHHHHHHHHHHHHCCCeeeeECCccccCHHHH
Confidence                3457889999999988653334445777654

Includes Human Mgc45594 gene product of undetermined function. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>cd08252 AL_MDR Arginate lyase and other MDR family members

Probab=98.57  E-value=6.9e-07  Score=58.79  Aligned_cols=95  Identities=14%  Similarity=0.201  Sum_probs=65.6

Q ss_pred             HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc------C-----
Q 040104            6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY------K-----   74 (105)
Q Consensus         6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------~-----   74 (105)
                      .+.++...++++|+++|++|+...+..++++++++|+++.+|...  ..++...+..++.++.+....      .     
T Consensus       207 ~~~i~~~~~~~~d~vl~~~~~~~~~~~~~~~l~~~g~~v~~g~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (336)
T cd08252         207 AEQLEALGIEPVDYIFCLTDTDQHWDAMAELIAPQGHICLIVDPQ--EPLDLGPLKSKSASFHWEFMFTRSMFQTPDMIE  284 (336)
T ss_pred             HHHHHhhCCCCCCEEEEccCcHHHHHHHHHHhcCCCEEEEecCCC--CcccchhhhcccceEEEEEeeccccccccchhh
Confidence            344554334689999999997666999999999999999998653  334444455677777765432      1     


Q ss_pred             --CCHHHHHHHHHcCCCCCCCcee---eeeeCCCC
Q 040104           75 --NTWPLCLEFLRSGKIDIKPLVT---HRFGFSQK  104 (105)
Q Consensus        75 --~~~~~~~~~v~~g~i~~~~~i~---~~~~l~~~  104 (105)
                        ..+.++++++.+|.+++  .++   +.++++++
T Consensus       285 ~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~  317 (336)
T cd08252         285 QHEILNEVADLLDAGKLKT--TLTETLGPINAENL  317 (336)
T ss_pred             HHHHHHHHHHHHHCCCEec--ceeeeecCCCHHHH
Confidence              23678999999998853  322   23566653

This group contains a structure identified as an arginate lyase. Other members are identified quinone reductases, alginate lyases, and other proteins related to the zinc-dependent dehydrogenases/reductases. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, whil

>cd08253 zeta_crystallin Zeta-crystallin with NADP-dependent quinone reductase activity (QOR)

Probab=98.56  E-value=3.7e-07  Score=59.30  Aligned_cols=97  Identities=23%  Similarity=0.451  Sum_probs=68.6

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-------CCC
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-------KNT   76 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~~~   76 (105)
                      ..+.+++.+ ++++|.+++|+|+.. ....+++++++|+++.+|.......++...++.++.++.+...+       ...
T Consensus       201 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (325)
T cd08253         201 LADRILAATAGQGVDVIIEVLANVN-LAKDLDVLAPGGRIVVYGSGGLRGTIPINPLMAKEASIRGVLLYTATPEERAAA  279 (325)
T ss_pred             HHHHHHHHcCCCceEEEEECCchHH-HHHHHHhhCCCCEEEEEeecCCcCCCChhHHHhcCceEEeeehhhcCHHHHHHH
Confidence            445666666 468999999999876 88899999999999999865433344445545677777765433       224


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.++.+++.++.+  ++..+++|+++++
T Consensus       280 ~~~~~~~~~~~~i--~~~~~~~~~~~~~  305 (325)
T cd08253         280 AEAIAAGLADGAL--RPVIAREYPLEEA  305 (325)
T ss_pred             HHHHHHHHHCCCc--cCccccEEcHHHH
Confidence            5666778888887  4446667887653

Zeta-crystallin is a eye lens protein with NADP-dependent quinone reductase activity (QOR). It has been cited as a structural component in mammalian eyes, but also has homology to quinone reductases in unrelated species. QOR catalyzes the conversion of a quinone and NAD(P)H to a hydroquinone and NAD(P+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR acts in the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. Alcohol dehydrogenase in the liver converts

>cd08289 MDR_yhfp_like Yhfp putative quinone oxidoreductases

Probab=98.56  E-value=5.6e-07  Score=58.99  Aligned_cols=96  Identities=17%  Similarity=0.184  Sum_probs=64.0

Q ss_pred             HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---CCCHHHHHH
Q 040104            7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---KNTWPLCLE   82 (105)
Q Consensus         7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~   82 (105)
                      +.+++..++++|+++||+|+.. +..++++++++|+++.+|.... ..++++..++.+++++.++...   .....++++
T Consensus       204 ~~~~~~~~~~~d~vld~~g~~~-~~~~~~~l~~~G~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (326)
T cd08289         204 ESIKPLEKQRWAGAVDPVGGKT-LAYLLSTLQYGGSVAVSGLTGGGEVETTVFPFILRGVNLLGIDSVECPMELRRRIWR  282 (326)
T ss_pred             HHHHhhccCCcCEEEECCcHHH-HHHHHHHhhcCCEEEEEeecCCCCCCcchhhhhhccceEEEEEeEecCchHHHHHHH
Confidence            3444454568999999999864 9999999999999999997532 2334455566889999887532   223444544


Q ss_pred             HHHcCCCCC---CCceeeeeeCCCC
Q 040104           83 FLRSGKIDI---KPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~---~~~i~~~~~l~~~  104 (105)
                      .+.+ .+.+   ...++++|+++++
T Consensus       283 ~~~~-~~~~~~~~~~~~~~~~l~~~  306 (326)
T cd08289         283 RLAT-DLKPTQLLNEIKQEITLDEL  306 (326)
T ss_pred             HHHh-hcCccccccccceEeeHHHH
Confidence            4432 3321   2345778888764

yhfp putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH

>cd05286 QOR2 Quinone oxidoreductase (QOR)

Probab=98.55  E-value=5.3e-07  Score=58.36  Aligned_cols=97  Identities=18%  Similarity=0.283  Sum_probs=67.6

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc---------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ..+.+++.+ ++++|.+++|+|+.. ...++++++++|+++.+|..... ..++...+..+++++.+....         
T Consensus       193 ~~~~~~~~~~~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (320)
T cd05286         193 FVERVREITGGRGVDVVYDGVGKDT-FEGSLDSLRPRGTLVSFGNASGPVPPFDLLRLSKGSLFLTRPSLFHYIATREEL  271 (320)
T ss_pred             HHHHHHHHcCCCCeeEEEECCCcHh-HHHHHHhhccCcEEEEEecCCCCCCccCHHHHHhcCcEEEEEehhhhcCCHHHH
Confidence            445666666 468999999999864 89999999999999999865432 223444444677777643221         


Q ss_pred             CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ...+.++++++.++++++  ..++.|+++++
T Consensus       272 ~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~  300 (320)
T cd05286         272 LARAAELFDAVASGKLKV--EIGKRYPLADA  300 (320)
T ss_pred             HHHHHHHHHHHHCCCCcC--cccceEcHHHH
Confidence            234567888999998853  45667887653

Quinone oxidoreductase (QOR) and 2-haloacrylate reductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. 2-haloacrylate reductase, a member of this subgroup, catalyzes the NADPH-dependent reduction of a carbon-carbon double bond in organohalogen compounds. Although similar to QOR, Burkholderia 2-haloacrylate reductase does not act on the quinones 1,4-benzoquinone

>cd08272 MDR6 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.54  E-value=6.1e-07  Score=58.40  Aligned_cols=94  Identities=26%  Similarity=0.429  Sum_probs=66.4

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc----------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----------   73 (105)
                      ..+.+.+.+ ++++|.++||+|+.. ...++.+++++|+++.+|...   ..+......+++++.+....          
T Consensus       199 ~~~~~~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (326)
T cd08272         199 VVEYVAEHTGGRGFDVVFDTVGGET-LDASFEAVALYGRVVSILGGA---THDLAPLSFRNATYSGVFTLLPLLTGEGRA  274 (326)
T ss_pred             HHHHHHHhcCCCCCcEEEECCChHH-HHHHHHHhccCCEEEEEecCC---ccchhhHhhhcceEEEEEcccccccccchh
Confidence            345566666 458999999999865 889999999999999998653   22222233567777665422          


Q ss_pred             --CCCHHHHHHHHHcCCCCCCCcee-eeeeCCCC
Q 040104           74 --KNTWPLCLEFLRSGKIDIKPLVT-HRFGFSQK  104 (105)
Q Consensus        74 --~~~~~~~~~~v~~g~i~~~~~i~-~~~~l~~~  104 (105)
                        ...+.++++++.++++  +++++ +.|+++++
T Consensus       275 ~~~~~~~~~~~~l~~~~l--~~~~~~~~~~~~~~  306 (326)
T cd08272         275 HHGEILREAARLVERGQL--RPLLDPRTFPLEEA  306 (326)
T ss_pred             hHHHHHHHHHHHHHCCCc--ccccccceecHHHH
Confidence              2357778889999988  44555 77887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd05280 MDR_yhdh_yhfp Yhdh and yhfp-like putative quinone oxidoreductases

Probab=98.53  E-value=4.6e-07  Score=59.28  Aligned_cols=87  Identities=17%  Similarity=0.199  Sum_probs=60.1

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---CCCH----HHHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---KNTW----PLCLEFLR   85 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---~~~~----~~~~~~v~   85 (105)
                      ++++|+++|++|+.. +..++++++++|+++.+|.... +..+++..+..+++++.++...   ....    +.+.+++.
T Consensus       211 ~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  289 (325)
T cd05280         211 KARWAGAIDTVGGDV-LANLLKQTKYGGVVASCGNAAGPELTTTVLPFILRGVSLLGIDSVNCPMELRKQVWQKLATEWK  289 (325)
T ss_pred             CCCccEEEECCchHH-HHHHHHhhcCCCEEEEEecCCCCccccccchheeeeeEEEEEEeecCchhHHHHHHHHHHHHHh
Confidence            458999999999865 9999999999999999997542 2344545555788888886543   1223    33444445


Q ss_pred             cCCCCCCCceeeeeeCCCC
Q 040104           86 SGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        86 ~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+.   .+.+.++||++++
T Consensus       290 ~~~---~~~~~~~~~~~~~  305 (325)
T cd05280         290 PDL---LEIVVREISLEEL  305 (325)
T ss_pred             cCC---ccceeeEecHHHH
Confidence            552   3346668888764

Yhdh and yhfp-like putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and so

>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD)

Probab=98.50  E-value=7.1e-07  Score=58.67  Aligned_cols=86  Identities=16%  Similarity=0.177  Sum_probs=64.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      +++|.++++++....++.++++++++|+++.+|..... ..+++.. ..++..+.++... ...+.++++++.++.+++ 
T Consensus       224 ~~vD~vi~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~l~~~~~l~~-  301 (329)
T cd08298         224 EPLDAAIIFAPVGALVPAALRAVKKGGRVVLAGIHMSDIPAFDYEL-LWGEKTIRSVANLTRQDGEEFLKLAAEIPIKP-  301 (329)
T ss_pred             CcccEEEEcCCcHHHHHHHHHHhhcCCEEEEEcCCCCCCCccchhh-hhCceEEEEecCCCHHHHHHHHHHHHcCCCCc-
Confidence            47999999877777799999999999999999854321 1223322 4567788777655 667889999999998854 


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                       . .++|+++++
T Consensus       302 -~-~~~~~~~~~  311 (329)
T cd08298         302 -E-VETYPLEEA  311 (329)
T ss_pred             -e-EEEEeHHHH
Confidence             3 468888764

These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha

>cd08275 MDR3 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.50  E-value=1.2e-06  Score=57.33  Aligned_cols=97  Identities=21%  Similarity=0.296  Sum_probs=68.2

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--c---------------cccchhhhhcCeEE
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--M---------------TVPLTPAAAREVDV   67 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~---------------~~~~~~~~~~~~~i   67 (105)
                      ..+.+++.+++++|+++||+|+.. ...++++++++|+++.+|.....  .               .+....+..++.++
T Consensus       195 ~~~~~~~~~~~~~d~v~~~~g~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (337)
T cd08275         195 YVEEVKKISPEGVDIVLDALGGED-TRKSYDLLKPMGRLVVYGAANLVTGEKRSWFKLAKKWWNRPKVDPMKLISENKSV  273 (337)
T ss_pred             HHHHHHHHhCCCceEEEECCcHHH-HHHHHHhhccCcEEEEEeecCCcCcccccccccccccccccccCHHHHhhcCceE
Confidence            445566666668999999999875 89999999999999999864321  1               11123446677888


Q ss_pred             EEeecc---------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           68 VGVFRY---------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        68 ~~~~~~---------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .++...         ...+.++++++.++.+  ++..++.|+++++
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~  317 (337)
T cd08275         274 LGFNLGWLFEERELLTEVMDKLLKLYEEGKI--KPKIDSVFPFEEV  317 (337)
T ss_pred             EEeechhhhhChHHHHHHHHHHHHHHHCCCC--CCceeeEEcHHHH
Confidence            776432         1236778889999988  4456678887653

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>TIGR02824 quinone_pig3 putative NAD(P)H quinone oxidoreductase, PIG3 family

Probab=98.47  E-value=1.4e-06  Score=56.65  Aligned_cols=96  Identities=21%  Similarity=0.390  Sum_probs=68.9

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeeccC--------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRYK--------   74 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~~--------   74 (105)
                      ..+.+++.. ++++|.+++++|+.. +..++.+++++|+++.+|.... ...+++..+..+++++.+.....        
T Consensus       196 ~~~~~~~~~~~~~~d~~i~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  274 (325)
T TIGR02824       196 FVEVVKAETGGKGVDVILDIVGGSY-LNRNIKALALDGRIVQIGFQGGRKAELDLGPLLAKRLTITGSTLRARPVAEKAA  274 (325)
T ss_pred             HHHHHHHHcCCCCeEEEEECCchHH-HHHHHHhhccCcEEEEEecCCCCcCCCChHHHHhcCCEEEEEehhhcchhhhHH
Confidence            445566666 458999999999865 8899999999999999986432 22445555557899988876431        


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           75 ---NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                         ..+.++++++.++++  ++..++.|++++
T Consensus       275 ~~~~~~~~~~~~~~~~~l--~~~~~~~~~~~~  304 (325)
T TIGR02824       275 IAAELREHVWPLLASGRV--RPVIDKVFPLED  304 (325)
T ss_pred             HHHHHHHHHHHHHHCCcc--cCccccEEeHHH
Confidence               124567788999988  444666777765

Members of this family are putative quinone oxidoreductases that belong to the broader superfamily (modeled by Pfam pfam00107) of zinc-dependent alcohol (of medium chain length) dehydrogenases and quinone oxiooreductases. The alignment shows no motif of conserved Cys residues as are found in zinc-binding members of the superfamily, and members are likely to be quinone oxidoreductases instead. A member of this family in Homo sapiens, PIG3, is induced by p53 but is otherwise uncharacterized.

>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins

Probab=98.43  E-value=1.1e-06  Score=57.83  Aligned_cols=87  Identities=22%  Similarity=0.363  Sum_probs=66.6

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      +++|+++|+++.......++++++++|+++.+|..... .......+..++.++.++... ...++++++++.++.+++ 
T Consensus       224 ~~~d~vi~~~~~~~~~~~~~~~l~~~G~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~l~~-  302 (330)
T cd08245         224 GGADVILVTVVSGAAAEAALGGLRRGGRIVLVGLPESPPFSPDIFPLIMKRQSIAGSTHGGRADLQEALDFAAEGKVKP-  302 (330)
T ss_pred             CCCCEEEECCCcHHHHHHHHHhcccCCEEEEECCCCCCccccchHHHHhCCCEEEEeccCCHHHHHHHHHHHHcCCCcc-
Confidence            46999999988777789999999999999999864322 222344566788888888776 678888999999999853 


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                       . .++|+++++
T Consensus       303 -~-~~~~~~~~~  312 (330)
T cd08245         303 -M-IETFPLDQA  312 (330)
T ss_pred             -e-EEEEcHHHH
Confidence             3 357887653

Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an

>cd08249 enoyl_reductase_like enoyl_reductase_like

Probab=98.41  E-value=2e-06  Score=57.03  Aligned_cols=97  Identities=22%  Similarity=0.263  Sum_probs=61.6

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhc--CCEEEEEcCCCCCccccchhhhhcCeEEEEee-----cc---
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA--GGKVCLVGMGHHEMTVPLTPAAAREVDVVGVF-----RY---   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~--~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~-----~~---   73 (105)
                      ++.+.+++.+++++|+++|++|++..+..+++++++  +|+++.+|.......+. ..............     ..   
T Consensus       209 ~~~~~l~~~~~~~~d~vl~~~g~~~~~~~~~~~l~~~~~g~~v~~g~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  287 (339)
T cd08249         209 DVVEDIRAATGGKLRYALDCISTPESAQLCAEALGRSGGGKLVSLLPVPEETEPR-KGVKVKFVLGYTVFGEIPEDREFG  287 (339)
T ss_pred             hHHHHHHHhcCCCeeEEEEeeccchHHHHHHHHHhccCCCEEEEecCCCccccCC-CCceEEEEEeeeecccccccccch
Confidence            455667777777899999999985569999999999  99999998654322111 01111111111111     11   


Q ss_pred             CCCHHHHHHHHHcCCCCCCCceeeeee--CCC
Q 040104           74 KNTWPLCLEFLRSGKIDIKPLVTHRFG--FSQ  103 (105)
Q Consensus        74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~--l~~  103 (105)
                      ...+.+++++++++++++.+  ..+++  +++
T Consensus       288 ~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~  317 (339)
T cd08249         288 EVFWKYLPELLEEGKLKPHP--VRVVEGGLEG  317 (339)
T ss_pred             HHHHHHHHHHHHcCCccCCC--ceecCCcHHH
Confidence            34577899999999996542  23455  554

Member identified as possible enoyl reductase of the MDR family. 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol de

>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.38  E-value=4e-06  Score=53.26  Aligned_cols=71  Identities=27%  Similarity=0.433  Sum_probs=55.3

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcccc-chhhhhcCeEEEEeecc-CCCHHHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVP-LTPAAAREVDVVGVFRY-KNTWPLCLEFL   84 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~-~~~~~~~~~~i~~~~~~-~~~~~~~~~~v   84 (105)
                      ++++|++++++|....+..++++++++|+++.+|......... ....+.+++++.++..+ ..+++++++++
T Consensus       199 ~~~~d~vi~~~~~~~~~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  271 (271)
T cd05188         199 GGGADVVIDAVGGPETLAQALRLLRPGGRIVVVGGTSGGPPLDDLRRLLFKELTIIGSTGGTREDFEEALDLL  271 (271)
T ss_pred             CCCCCEEEECCCCHHHHHHHHHhcccCCEEEEEccCCCCCCcccHHHHHhcceEEEEeecCCHHHHHHHHhhC
Confidence            4689999999998555899999999999999998755332222 34567899999998877 66788877653

The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro

>cd05195 enoyl_red enoyl reductase of polyketide synthase

Probab=98.37  E-value=3.3e-06  Score=53.89  Aligned_cols=96  Identities=20%  Similarity=0.232  Sum_probs=65.8

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccchhhhhcCeEEEEeecc-------
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLTPAAAREVDVVGVFRY-------   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~~~~~~~~~i~~~~~~-------   73 (105)
                      +..+++++.+ ++++|.++|++|+.. +..++++++++|+++.+|.....  ..+.... +.++..+......       
T Consensus       166 ~~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~  243 (293)
T cd05195         166 SFADGILRATGGRGVDVVLNSLSGEL-LRASWRCLAPFGRFVEIGKRDILSNSKLGMRP-FLRNVSFSSVDLDQLARERP  243 (293)
T ss_pred             hHHHHHHHHhCCCCceEEEeCCCchH-HHHHHHhcccCceEEEeeccccccCCccchhh-hccCCeEEEEeHHHHhhhCh
Confidence            3456677776 568999999999984 99999999999999999865421  1222222 2344454443211       


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                         ...+.++++++.++++  ++.+++++++++
T Consensus       244 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  274 (293)
T cd05195         244 ELLRELLREVLELLEAGVL--KPLPPTVVPSAS  274 (293)
T ss_pred             HHHHHHHHHHHHHHHCCCc--ccCCCeeechhh
Confidence               2356788899999988  556676777765

Putative enoyl reductase of polyketide synthase. Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase

>cd05289 MDR_like_2 alcohol dehydrogenase and quinone reductase-like medium chain degydrogenases/reductases

Probab=98.37  E-value=8.9e-07  Score=57.18  Aligned_cols=84  Identities=21%  Similarity=0.338  Sum_probs=61.7

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHHHHHHHcCCCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLCLEFLRSGKIDI   91 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~g~i~~   91 (105)
                      ++++|.++|++|+.. ...++++++++|+++.+|.......    ....++.++......  ...+.++++++.++.+  
T Consensus       206 ~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  278 (309)
T cd05289         206 PGGVDAVLDTVGGET-LARSLALVKPGGRLVSIAGPPPAEQ----AAKRRGVRAGFVFVEPDGEQLAELAELVEAGKL--  278 (309)
T ss_pred             CCCceEEEECCchHH-HHHHHHHHhcCcEEEEEcCCCcchh----hhhhccceEEEEEecccHHHHHHHHHHHHCCCE--
Confidence            457999999999885 8999999999999999986543211    223445555544322  4678889999999987  


Q ss_pred             CCceeeeeeCCCC
Q 040104           92 KPLVTHRFGFSQK  104 (105)
Q Consensus        92 ~~~i~~~~~l~~~  104 (105)
                      +++++++|+++++
T Consensus       279 ~~~~~~~~~~~~~  291 (309)
T cd05289         279 RPVVDRVFPLEDA  291 (309)
T ss_pred             EEeeccEEcHHHH
Confidence            5557788888764

Members identified as zinc-dependent alcohol dehydrogenases and quinone oxidoreductase. QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts et

>TIGR02817 adh_fam_1 zinc-binding alcohol dehydrogenase family protein

Probab=98.36  E-value=6e-06  Score=54.39  Aligned_cols=91  Identities=12%  Similarity=0.238  Sum_probs=61.4

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc------C----
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY------K----   74 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~------~----   74 (105)
                      ..+.+++..++++|+++|++++...+..++++++++|+++.++..   ..++...+..++.++.+....      +    
T Consensus       205 ~~~~i~~~~~~~vd~vl~~~~~~~~~~~~~~~l~~~G~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (336)
T TIGR02817       205 LKAQLEKLGLEAVSYVFSLTHTDQHFKEIVELLAPQGRFALIDDP---AELDISPFKRKSISLHWEFMFTRSMFQTADMI  281 (336)
T ss_pred             HHHHHHHhcCCCCCEEEEcCCcHHHHHHHHHHhccCCEEEEEccc---ccccchhhhhcceEEEEEEeecccccchhhhh
Confidence            345566644568999999987766689999999999999988532   234444444455555542211      0    


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCceeeeee
Q 040104           75 ---NTWPLCLEFLRSGKIDIKPLVTHRFG  100 (105)
Q Consensus        75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~  100 (105)
                         ..++++++++.+|+++  +.++++|+
T Consensus       282 ~~~~~~~~~~~l~~~~~l~--~~~~~~~~  308 (336)
T TIGR02817       282 EQHHLLNRVARLVDAGKIR--TTLAETFG  308 (336)
T ss_pred             hhHHHHHHHHHHHHCCCee--ccchhccC
Confidence               3478899999999884  44555554

Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). While some current members of this family carry designations as putative alginate lyase, it seems no sequence with a direct characterization as such is detected by this model.

>smart00829 PKS_ER Enoylreductase

Probab=98.28  E-value=4e-06  Score=53.52  Aligned_cols=96  Identities=21%  Similarity=0.289  Sum_probs=64.3

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc--------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY--------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~--------   73 (105)
                      ..+.+.+.+ ++++|.++|++|+. .+..++++++++|+++.+|....  ...++... +.++.++.+....        
T Consensus       163 ~~~~~~~~~~~~~~d~vi~~~~~~-~~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  240 (288)
T smart00829      163 FADEILRATGGRGVDVVLNSLAGE-FLDASLRCLAPGGRFVEIGKRDIRDNSQLGMAP-FRRNVSYHAVDLDALEEGPDR  240 (288)
T ss_pred             HHHHHHHHhCCCCcEEEEeCCCHH-HHHHHHHhccCCcEEEEEcCcCCccccccchhh-hcCCceEEEEEHHHhhcChHH
Confidence            445566666 45899999999965 48999999999999999986431  22233322 3455555544221        


Q ss_pred             -CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                       ...+.++++++.++++++  ...+.|+++++
T Consensus       241 ~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  270 (288)
T smart00829      241 IRELLAEVLELFAEGVLRP--LPVTVFPISDV  270 (288)
T ss_pred             HHHHHHHHHHHHHCCCccC--cCceEEcHHHH
Confidence             234677888999998854  34567887653

Enoylreductase in Polyketide synthases.

>cd08251 polyketide_synthase polyketide synthase

Probab=98.25  E-value=1.3e-06  Score=56.35  Aligned_cols=97  Identities=18%  Similarity=0.297  Sum_probs=63.5

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEE-----Eeecc--
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVV-----GVFRY--   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~-----~~~~~--   73 (105)
                      +..+.+.+.+ ++++|.++|++++.. ...++++++++|+++.+|....  ...+....+ .++..+.     +.+..  
T Consensus       176 ~~~~~i~~~~~~~~~d~v~~~~~~~~-~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~  253 (303)
T cd08251         176 DFEEEIMRLTGGRGVDVVINTLSGEA-IQKGLNCLAPGGRYVEIAMTALKSAPSVDLSVL-SNNQSFHSVDLRKLLLLDP  253 (303)
T ss_pred             cHHHHHHHHcCCCCceEEEECCcHHH-HHHHHHHhccCcEEEEEeccCCCccCccChhHh-hcCceEEEEehHHhhhhCH
Confidence            3455666666 468999999998654 8999999999999999986432  122333222 2222222     22111  


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         .+.+.++++++++|.+  +++.++.|+++++
T Consensus       254 ~~~~~~~~~~~~~~~~g~~--~~~~~~~~~~~~~  285 (303)
T cd08251         254 EFIADYQAEMVSLVEEGEL--RPTVSRIFPFDDI  285 (303)
T ss_pred             HHHHHHHHHHHHHHHCCCc--cCCCceEEcHHHH
Confidence               2457778899999988  4456678887653

Polyketide synthases produce polyketides in step by step mechanism that is similar to fatty acid synthesis. Enoyl reductase reduces a double to single bond. Erythromycin is one example of a polyketide generated by 3 complex enzymes (megasynthases). 2-enoyl thioester reductase (ETR) catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the alcohol dehydrogenases in this family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde a

>cd08273 MDR8 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.19  E-value=5.8e-06  Score=54.26  Aligned_cols=88  Identities=23%  Similarity=0.320  Sum_probs=58.9

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc--ccc------------hhhhhcCeEEEEee--cc----
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT--VPL------------TPAAAREVDVVGVF--RY----   73 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~--~~~------------~~~~~~~~~i~~~~--~~----   73 (105)
                      ++++|.++||+|+.. +..++++++++|+++.+|.......  +..            ......+..+.+..  ..    
T Consensus       201 ~~~~d~vl~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (331)
T cd08273         201 PGGVDVVFDGVGGES-YEESYAALAPGGTLVCYGGNSSLLQGRRSLAALGSLLARLAKLKLLPTGRRATFYYVWRDRAED  279 (331)
T ss_pred             CCCceEEEECCchHH-HHHHHHHhcCCCEEEEEccCCCCCCccccccchhhhhhhhhhhcceeccceeEEEeechhcccC
Confidence            458999999999987 8999999999999999986542211  111            01122222222221  11    


Q ss_pred             ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          .+.+.++++++.+|.++  +.++++|+++++
T Consensus       280 p~~~~~~~~~~~~~~~~~~l~--~~~~~~~~~~~~  312 (331)
T cd08273         280 PKLFRQDLTELLDLLAKGKIR--PKIAKRLPLSEV  312 (331)
T ss_pred             HHHHHHHHHHHHHHHHCCCcc--CCcceEEcHHHH
Confidence                35678899999999884  456778888763

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08268 MDR2 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.18  E-value=1.6e-05  Score=51.73  Aligned_cols=96  Identities=25%  Similarity=0.387  Sum_probs=64.5

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc---------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ..+.+.+.+ +.++|.+++++|+.. ...++++++++|+++.+|.... ...++....+.++.++.+....         
T Consensus       201 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~g~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  279 (328)
T cd08268         201 LVAEVLRITGGKGVDVVFDPVGGPQ-FAKLADALAPGGTLVVYGALSGEPTPFPLKAALKKSLTFRGYSLDEITLDPEAR  279 (328)
T ss_pred             HHHHHHHHhCCCCceEEEECCchHh-HHHHHHhhccCCEEEEEEeCCCCCCCCchHHHhhcCCEEEEEecccccCCHHHH
Confidence            344555555 458999999999865 8999999999999999986432 2233333346677777766432         


Q ss_pred             CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                      ...+..+.+++.++.++  ++.++.|++++
T Consensus       280 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  307 (328)
T cd08268         280 RRAIAFILDGLASGALK--PVVDRVFPFDD  307 (328)
T ss_pred             HHHHHHHHHHHHCCCCc--CCcccEEcHHH
Confidence            12344555667788774  44566777765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08271 MDR5 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.16  E-value=5.2e-06  Score=54.14  Aligned_cols=96  Identities=22%  Similarity=0.307  Sum_probs=62.0

Q ss_pred             HHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc--hhhhhcCeEEEEeecc--------
Q 040104            5 EVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL--TPAAAREVDVVGVFRY--------   73 (105)
Q Consensus         5 ~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~i~~~~~~--------   73 (105)
                      ..+++++.+ ++++|.+++++|+.. ...++++++++|+++.+|..........  ....++++.+.+.+..        
T Consensus       197 ~~~~~~~~~~~~~~d~vi~~~~~~~-~~~~~~~l~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (325)
T cd08271         197 VCERIKEITGGRGVDAVLDTVGGET-AAALAPTLAFNGHLVCIQGRPDASPDPPFTRALSVHEVALGAAHDHGDPAAWQD  275 (325)
T ss_pred             HHHHHHHHcCCCCCcEEEECCCcHh-HHHHHHhhccCCEEEEEcCCCCCcchhHHhhcceEEEEEecccccccchhhHHH
Confidence            445566666 468999999999876 6789999999999999975432111111  1123444454444322        


Q ss_pred             -CCCHHHHHHHHHcCCCCCCCceeeeeeCCC
Q 040104           74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ  103 (105)
Q Consensus        74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~  103 (105)
                       .+.+.++++++.+++++  ++.+++|++++
T Consensus       276 ~~~~~~~~~~~~~~~~i~--~~~~~~~~~~~  304 (325)
T cd08271         276 LRYAGEELLELLAAGKLE--PLVIEVLPFEQ  304 (325)
T ss_pred             HHHHHHHHHHHHHCCCee--eccceEEcHHH
Confidence             12356788899999884  34456777765

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08247 AST1_like AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast

Probab=98.11  E-value=1.5e-05  Score=53.01  Aligned_cols=89  Identities=16%  Similarity=0.187  Sum_probs=57.7

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhh---cCCEEEEEcC-CCCCc---c--------ccchh----hhhcCeEEEEeecc-
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATR---AGGKVCLVGM-GHHEM---T--------VPLTP----AAAREVDVVGVFRY-   73 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~---~~G~~v~~g~-~~~~~---~--------~~~~~----~~~~~~~i~~~~~~-   73 (105)
                      ++++|++|||+|+......++++++   ++|+++.++. ...+.   .        +....    ..++..++...... 
T Consensus       223 ~~~~d~vl~~~g~~~~~~~~~~~l~~~~~~G~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  302 (352)
T cd08247         223 QGKFDLILDCVGGYDLFPHINSILKPKSKNGHYVTIVGDYKANYKKDTFNSWDNPSANARKLFGSLGLWSYNYQFFLLDP  302 (352)
T ss_pred             CCCceEEEECCCCHHHHHHHHHHhCccCCCCEEEEEeCCCcccccchhhhhccccchhhhhhhhhhcCCCcceEEEEecC
Confidence            4689999999998656889999999   9999998742 21110   0        01111    11333344333221 


Q ss_pred             -CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 -KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 -~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                       ...+.++++++.+|++  +++++++|+++++
T Consensus       303 ~~~~~~~~~~~~~~~~l--~~~~~~~~~l~~~  332 (352)
T cd08247         303 NADWIEKCAELIADGKV--KPPIDSVYPFEDY  332 (352)
T ss_pred             CHHHHHHHHHHHhCCCe--EeeeccEecHHHH
Confidence             2357889999999988  5556778888754

This group contains members identified in targeting of yeast membrane proteins ATPase. AST1 is a cytoplasmic protein associated with the periplasmic membrane in yeast, identified as a multicopy suppressor of pma1 mutants which cause temperature sensitive growth arrest due to the inability of ATPase to target to the cell surface. This family is homologous to the medium chain family of dehydrogenases and reductases. Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-termi

>cd08288 MDR_yhdh Yhdh putative quinone oxidoreductases

Probab=98.11  E-value=1.7e-05  Score=51.96  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=65.1

Q ss_pred             HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------CCCHHH
Q 040104            8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------KNTWPL   79 (105)
Q Consensus         8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~   79 (105)
                      .+++.+++++|.++|++|+.. +..++..++.+|+++.+|.... +..+++..++.++.++.+....       ...+..
T Consensus       204 ~~~~~~~~~~~~~~d~~~~~~-~~~~~~~~~~~g~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (324)
T cd08288         204 PGRPLQKERWAGAVDTVGGHT-LANVLAQTRYGGAVAACGLAGGADLPTTVMPFILRGVTLLGIDSVMAPIERRRAAWAR  282 (324)
T ss_pred             hhhhhccCcccEEEECCcHHH-HHHHHHHhcCCCEEEEEEecCCCCCCcchhhhhccccEEEEEEeecccchhhHHHHHH
Confidence            344455557899999999855 7889999999999999996432 2234444455788998886432       224666


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.+++.++.+  .+ +.+++|++++
T Consensus       283 ~~~~~~~~~~--~~-i~~~~~~~~~  304 (324)
T cd08288         283 LARDLDPALL--EA-LTREIPLADV  304 (324)
T ss_pred             HHHHHhcCCc--cc-cceeecHHHH
Confidence            7778888877  33 3568888764

Yhdh putative quinone oxidoreductases (QOR). QOR catalyzes the conversion of a quinone + NAD(P)H to a hydroquinone + NAD(P)+. Quinones are cyclic diones derived from aromatic compounds. Membrane bound QOR actin the respiratory chains of bacteria and mitochondria, while soluble QOR acts to protect from toxic quinones (e.g. DT-diaphorase) or as a soluble eye-lens protein in some vertebrates (e.g. zeta-crystalin). QOR reduces quinones through a semi-quinone intermediate via a NAD(P)H-dependent single electron transfer. QOR is a member of the medium chain dehydrogenase/reductase family, but lacks the zinc-binding sites of the prototypical alcohol dehydrogenases of this group. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catal

>cd08267 MDR1 Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family

Probab=98.05  E-value=1.4e-05  Score=52.05  Aligned_cols=89  Identities=21%  Similarity=0.309  Sum_probs=55.3

Q ss_pred             CCCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcCCCCCccccc----hhhhhcCeEEEEeecc--CCCHHHHHHHHHc
Q 040104           14 GTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHHEMTVPL----TPAAAREVDVVGVFRY--KNTWPLCLEFLRS   86 (105)
Q Consensus        14 ~~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~----~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~   86 (105)
                      ++++|++++|+|+. .........++++|+++.+|..........    .........+......  ...+.++++++.+
T Consensus       206 ~~~~d~vi~~~~~~~~~~~~~~~~l~~~g~~i~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  285 (319)
T cd08267         206 GEKYDVIFDAVGNSPFSLYRASLALKPGGRYVSVGGGPSGLLLVLLLLPLTLGGGGRRLKFFLAKPNAEDLEQLAELVEE  285 (319)
T ss_pred             CCCCcEEEECCCchHHHHHHhhhccCCCCEEEEeccccccccccccccchhhccccceEEEEEecCCHHHHHHHHHHHHC
Confidence            45899999999853 223444445999999999997543222111    1111222222222222  5678889999999


Q ss_pred             CCCCCCCceeeeeeCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~  104 (105)
                      +++  +++++++|+++++
T Consensus       286 ~~~--~~~~~~~~~~~~i  301 (319)
T cd08267         286 GKL--KPVIDSVYPLEDA  301 (319)
T ss_pred             CCe--eeeeeeEEcHHHH
Confidence            988  4557778887754

This group is a member of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, but lacks the zinc-binding sites of the zinc-dependent alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcoh

>cd08248 RTN4I1 Human Reticulon 4 Interacting Protein 1

Probab=97.94  E-value=6e-06  Score=54.70  Aligned_cols=87  Identities=20%  Similarity=0.200  Sum_probs=57.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--Cc--cc---------cchhhhh----cCeEEEEe-ecc-CC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EM--TV---------PLTPAAA----REVDVVGV-FRY-KN   75 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~--~~---------~~~~~~~----~~~~i~~~-~~~-~~   75 (105)
                      +++|+++|++|+.. ...++++++++|+++.+|....  ..  .+         .+.....    +...+... ... ..
T Consensus       226 ~~vd~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (350)
T cd08248         226 GKFDVILDTVGGDT-EKWALKLLKKGGTYVTLVSPLLKNTDKLGLVGGMLKSAVDLLKKNVKSLLKGSHYRWGFFSPSGS  304 (350)
T ss_pred             CCCCEEEECCChHH-HHHHHHHhccCCEEEEecCCcccccccccccchhhhhHHHHHHHHHHHHhcCCCeeEEEECCCHH
Confidence            57999999999885 9999999999999999985421  10  11         0000100    11111111 112 45


Q ss_pred             CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+.++++++.+|.+  ++.++++|+++++
T Consensus       305 ~~~~~~~~~~~g~~--~~~~~~~~~~~~~  331 (350)
T cd08248         305 ALDELAKLVEDGKI--KPVIDKVFPFEEV  331 (350)
T ss_pred             HHHHHHHHHhCCCE--ecccceeecHHHH
Confidence            78999999999988  4557778888764

Human Reticulon 4 Interacting Protein 1 is a member of the medium chain dehydrogenase/ reductase (MDR) family. Riticulons are endoplasmic reticulum associated proteins involved in membrane trafficking and neuroendocrine secretion. The MDR/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES.

>KOG1202 consensus Animal-type fatty acid synthase and related proteins [Lipid transport and metabolism]

Probab=97.78  E-value=3.2e-05  Score=58.73  Aligned_cols=99  Identities=15%  Similarity=0.245  Sum_probs=69.9

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc------C
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY------K   74 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~------~   74 (105)
                      ++..-+...| |+|+|+|++....+. +..+++||+.+||+..+|-..  ...++- +..+.+|.+++|....      .
T Consensus      1612 sFEq~vl~~T~GrGVdlVLNSLaeEk-LQASiRCLa~~GRFLEIGKfDLSqNspLG-MavfLkNvsfHGiLLDsvmege~ 1689 (2376)
T KOG1202|consen 1612 SFEQHVLWHTKGRGVDLVLNSLAEEK-LQASIRCLALHGRFLEIGKFDLSQNSPLG-MAVFLKNVSFHGILLDSVMEGEE 1689 (2376)
T ss_pred             cHHHHHHHHhcCCCeeeehhhhhHHH-HHHHHHHHHhcCeeeeecceecccCCcch-hhhhhcccceeeeehhhhhcCcH
Confidence            3445566677 789999999999887 999999999999999998533  112222 2346789999988743      4


Q ss_pred             CCHHHHHHHHHcCCCC--CCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFLRSGKID--IKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v~~g~i~--~~~~i~~~~~l~~~  104 (105)
                      +++.++..++++|.-.  ++|+-+++|+=.++
T Consensus      1690 e~~~ev~~Lv~eGIksGvV~PL~ttvF~~~qv 1721 (2376)
T KOG1202|consen 1690 EMWREVAALVAEGIKSGVVRPLPTTVFHGQQV 1721 (2376)
T ss_pred             HHHHHHHHHHHhhhccCceeccccccccHHHH
Confidence            5678888888776221  25566667765443

>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed

Probab=96.93  E-value=0.0021  Score=41.59  Aligned_cols=35  Identities=14%  Similarity=0.333  Sum_probs=27.1

Q ss_pred             CCCcEEEEc-c-----CChHHHHHHHHhhhcCCEEEEEcCC
Q 040104           15 TGIDVSFDC-A-----GFNKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        15 ~g~d~vid~-~-----g~~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      +++|+|+.. +     .....+.+++++|++||++++.+..
T Consensus       145 ~~fD~Vi~~~v~~~~~d~~~~l~~~~r~LkpGG~l~i~~~~  185 (272)
T PRK11873        145 NSVDVIISNCVINLSPDKERVFKEAFRVLKPGGRFAISDVV  185 (272)
T ss_pred             CceeEEEEcCcccCCCCHHHHHHHHHHHcCCCcEEEEEEee
Confidence            478988853 2     2345699999999999999998753

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=94.50  E-value=0.095  Score=36.51  Aligned_cols=36  Identities=14%  Similarity=0.201  Sum_probs=31.2

Q ss_pred             CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~   51 (105)
                      ++|++|+++|....+. ..+..+++++.++.+|....
T Consensus       267 ~aDVVI~aTG~~~vI~~~~~~~mK~GailiNvG~~d~  303 (425)
T PRK05476        267 LGDIFVTATGNKDVITAEHMEAMKDGAILANIGHFDN  303 (425)
T ss_pred             CCCEEEECCCCHHHHHHHHHhcCCCCCEEEEcCCCCC
Confidence            6899999999988676 68899999999999997653

>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain

Probab=94.45  E-value=0.082  Score=31.52  Aligned_cols=37  Identities=24%  Similarity=0.436  Sum_probs=29.7

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      -|+|+|+||+|.-...+.+...++.|.+-|+++.+..
T Consensus        86 ~gvDiVie~tG~f~~~~~~~~hl~~GakkViisap~~  122 (149)
T smart00846       86 LGVDIVVECTGKFTTREKASAHLKAGAKKVIISAPAK  122 (149)
T ss_pred             cCCeEEEeccccccchHHHHHHHHcCCCEEEeCCCCC
Confidence            3899999999986656777788888888888887653

GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.

>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate

Probab=94.17  E-value=0.077  Score=31.76  Aligned_cols=36  Identities=25%  Similarity=0.459  Sum_probs=30.7

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|+|+||+|.-...+.+...++.|.+-|+++.+..
T Consensus        88 gvDiVvEcTG~f~~~~~~~~hl~~GakkViisap~~  123 (151)
T PF00044_consen   88 GVDIVVECTGKFRTRENAEAHLDAGAKKVIISAPSK  123 (151)
T ss_dssp             TESEEEETSSSTHSHHHHTHHHHTTESEEEESSS-S
T ss_pred             cccEEEeccccceecccccccccccccceeeccccc
Confidence            899999999997778888899999988888887654

The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....

>TIGR00438 rrmJ cell division protein FtsJ

Probab=94.02  E-value=0.36  Score=29.56  Aligned_cols=43  Identities=19%  Similarity=0.365  Sum_probs=29.9

Q ss_pred             HHHHHHHc-CCCCcEEEE-cc----CC------------hHHHHHHHHhhhcCCEEEEEcC
Q 040104            6 VEKIDKAM-GTGIDVSFD-CA----GF------------NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid-~~----g~------------~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      .+.+++.. ++++|+|+. ..    |.            ...+..+.++|+++|+++....
T Consensus        87 ~~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~  147 (188)
T TIGR00438        87 LNKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVF  147 (188)
T ss_pred             HHHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEc
Confidence            34455555 458999995 32    22            2457889999999999998653

>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase

Probab=93.72  E-value=0.13  Score=34.57  Aligned_cols=36  Identities=28%  Similarity=0.442  Sum_probs=32.0

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .++|+||+|+|.....+.+...++.|+..+.++.+.
T Consensus        88 ~gvDiVie~tG~~~s~e~a~~~l~aGa~~V~~SaP~  123 (325)
T TIGR01532        88 LGVDLVLDCTGVYGNREQGERHIRAGAKRVLFSHPG  123 (325)
T ss_pred             cCCCEEEEccchhccHHHHHHHHHcCCeEEEecCCC
Confidence            489999999999888888999999999999998663

Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.

>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit

Probab=92.63  E-value=0.34  Score=34.61  Aligned_cols=57  Identities=14%  Similarity=0.198  Sum_probs=38.4

Q ss_pred             CCCcEEEEcc---CChH---HHHHHHHhhhcCCEEEEEcCCC-CCcccc-chhhhh--cCeEEEEee
Q 040104           15 TGIDVSFDCA---GFNK---TMSTALSATRAGGKVCLVGMGH-HEMTVP-LTPAAA--REVDVVGVF   71 (105)
Q Consensus        15 ~g~d~vid~~---g~~~---~~~~~~~~l~~~G~~v~~g~~~-~~~~~~-~~~~~~--~~~~i~~~~   71 (105)
                      .++|++|+|+   |.+.   ..++.++.+++|+.++.++... +..+.. ..+.+.  .++++.+..
T Consensus       246 ~~~DIVI~TalipG~~aP~Lit~emv~~MKpGsvIVDlA~d~GGn~E~t~p~~~~~~~~GV~~~gv~  312 (511)
T TIGR00561       246 KEVDIIITTALIPGKPAPKLITEEMVDSMKAGSVIVDLAAEQGGNCEYTKPGEVYTTENQVKVIGYT  312 (511)
T ss_pred             CCCCEEEECcccCCCCCCeeehHHHHhhCCCCCEEEEeeeCCCCCEEEecCceEEEecCCEEEEeeC
Confidence            5799999999   6544   5778999999999999998744 333222 112221  347776654

In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.

>TIGR00936 ahcY adenosylhomocysteinase

Probab=92.03  E-value=0.37  Score=33.48  Aligned_cols=35  Identities=14%  Similarity=0.159  Sum_probs=30.6

Q ss_pred             CCcEEEEccCChHHHHH-HHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMST-ALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~-~~~~l~~~G~~v~~g~~~   50 (105)
                      +.|++|+++|+...++. .+..+++++.++.+|...
T Consensus       250 ~aDVVItaTG~~~vI~~~~~~~mK~GailiN~G~~~  285 (406)
T TIGR00936       250 IGDIFITATGNKDVIRGEHFENMKDGAIVANIGHFD  285 (406)
T ss_pred             cCCEEEECCCCHHHHHHHHHhcCCCCcEEEEECCCC
Confidence            57999999999887775 899999999999998653

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>PLN02358 glyceraldehyde-3-phosphate dehydrogenase

Probab=92.02  E-value=0.48  Score=32.11  Aligned_cols=37  Identities=16%  Similarity=0.290  Sum_probs=31.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      .|+|+||+|+|....-+.+-..+..|...+.+..+..
T Consensus        94 ~gvDiVie~tG~~~s~~~a~~hl~aGak~ViiSap~~  130 (338)
T PLN02358         94 AGADFVVESTGVFTDKDKAAAHLKGGAKKVVISAPSK  130 (338)
T ss_pred             cCCCEEEEcccchhhHHHHHHHHHCCCEEEEeCCCCC
Confidence            4899999999998878888899999988888876543

>PTZ00434 cytosolic glyceraldehyde 3-phosphate dehydrogenase; Provisional

Probab=90.83  E-value=0.37  Score=32.90  Aligned_cols=69  Identities=16%  Similarity=0.173  Sum_probs=45.4

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc--cc--cchhhhhcC--eEEEEeecc-CCCHHHHHHHH
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM--TV--PLTPAAARE--VDVVGVFRY-KNTWPLCLEFL   84 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~--~~--~~~~~~~~~--~~i~~~~~~-~~~~~~~~~~v   84 (105)
                      |+|+|+||+|.-...+.+...|+.|.+-|++..|....  .+  -.+.-.+..  .++...-.+ .+.+.-++..+
T Consensus       104 gvD~ViE~TG~f~t~~~a~~Hl~~GAKkViiSAP~~d~~~t~V~GVN~~~y~~~~~~IiSnASCTTNcLAP~~kvL  179 (361)
T PTZ00434        104 GVDYVIESTGLFTDKLAAEGHLKGGAKKVVISAPASGGAKTIVMGVNQHEYSPTEHHVVSNASCTTNCLAPIVHVL  179 (361)
T ss_pred             CCCEEEeCceeeccHHHHhhhhhcCCCEEEECCCCCCCCceEEEcCChHHcCcccCcEEECCChHHHhhHHHHHHh
Confidence            89999999998777888999999998888887664321  11  112112222  345544333 67777777777

>PF04019 DUF359: Protein of unknown function (DUF359); InterPro: IPR007164 This is family of archaebacterial proteins, which are about 170 amino acids in length

Probab=90.75  E-value=1.9  Score=24.89  Aligned_cols=49  Identities=24%  Similarity=0.220  Sum_probs=35.7

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      .+..+.+++....+-...|..-|-+.++.--.-+.+|.|.++++|.|..
T Consensus        48 ~el~~ai~~a~~~~~~~~I~V~GEEDL~~lPail~aP~gs~V~YGQP~e   96 (121)
T PF04019_consen   48 EELIEAIKKALESGKPVVIFVDGEEDLAVLPAILYAPEGSVVLYGQPGE   96 (121)
T ss_pred             HHHHHHHHHHHhCCCCEEEEEeChHHHHHHHHHHhCCCCCEEEECCCCC
Confidence            4556777777644555666666888866667777889999999998874

They have no known function. The most conserved portion of the protein contains the sequence GEEDL that may be important for its function.

>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=90.59  E-value=0.66  Score=31.39  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=30.3

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|+||+|+|....-+.+-..++.|...|.+..+.
T Consensus        89 gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap~  123 (331)
T PRK15425         89 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  123 (331)
T ss_pred             CCCEEEEecchhhcHHHHHHHHHCCCEEEEeCCCC
Confidence            89999999999876778888999998888887664

>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I

Probab=89.94  E-value=0.7  Score=31.22  Aligned_cols=35  Identities=23%  Similarity=0.428  Sum_probs=30.0

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|+||||+|....-+.+-..++.|.+.|.+..+.
T Consensus        90 gvDiVle~tG~~~s~~~a~~hl~~Gak~V~iSap~  124 (327)
T TIGR01534        90 GVDIVIECTGKFRDKEKLEGHLEAGAKKVLISAPS  124 (327)
T ss_pred             CCCEEEEccchhhcHHHHHHHhhCCCEEEEeCCCC
Confidence            89999999999876777888899998888887654

The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.

>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional

Probab=89.88  E-value=0.78  Score=31.79  Aligned_cols=36  Identities=25%  Similarity=0.260  Sum_probs=31.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|+||||+|.-..-+.+-..++.|.+.|.+..+.
T Consensus       149 ~gvDiVie~TG~f~s~~~a~~hl~aGAkkV~iSap~  184 (395)
T PLN03096        149 LGIDLVIEGTGVFVDREGAGKHIQAGAKKVLITAPG  184 (395)
T ss_pred             cCCCEEEECcchhhhHHHHHHHHHCCCEEEEeCCCC
Confidence            489999999999877788889999999999887653

>PLN02494 adenosylhomocysteinase

Probab=89.73  E-value=0.56  Score=33.25  Aligned_cols=35  Identities=14%  Similarity=0.257  Sum_probs=30.5

Q ss_pred             CCcEEEEccCChHHH-HHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTM-STALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ..|++|+++|....+ ...+..+++++.++.+|...
T Consensus       309 ~ADVVI~tTGt~~vI~~e~L~~MK~GAiLiNvGr~~  344 (477)
T PLN02494        309 EADIFVTTTGNKDIIMVDHMRKMKNNAIVCNIGHFD  344 (477)
T ss_pred             hCCEEEECCCCccchHHHHHhcCCCCCEEEEcCCCC
Confidence            579999999988754 78999999999999999753

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=89.58  E-value=2.2  Score=28.35  Aligned_cols=53  Identities=13%  Similarity=0.036  Sum_probs=37.3

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVG   69 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~   69 (105)
                      .++|+||+|++....-...++.+++++.++.++..++...+  .....++++..+
T Consensus       209 ~~aDiVI~t~p~~~i~~~~l~~~~~g~vIIDla~~pggtd~--~~a~~~Gv~~~~  261 (296)
T PRK08306        209 GKIDIIFNTIPALVLTKEVLSKMPPEALIIDLASKPGGTDF--EYAEKRGIKALL  261 (296)
T ss_pred             CCCCEEEECCChhhhhHHHHHcCCCCcEEEEEccCCCCcCe--eehhhCCeEEEE
Confidence            36899999998765456778889999999999876554444  223334555553

>COG4122 Predicted O-methyltransferase [General function prediction only]

Probab=89.44  E-value=1.3  Score=28.20  Aligned_cols=45  Identities=18%  Similarity=0.436  Sum_probs=30.8

Q ss_pred             HHHHHHHHHcCCCCcEEE-Ecc--CChHHHHHHHHhhhcCCEEEEEcC
Q 040104            4 EEVEKIDKAMGTGIDVSF-DCA--GFNKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vi-d~~--g~~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +..+.+.+...+.+|.|| |+-  -.+.-++.++++|++||.++.=-+
T Consensus       120 dal~~l~~~~~~~fDliFIDadK~~yp~~le~~~~lLr~GGliv~DNv  167 (219)
T COG4122         120 DALDVLSRLLDGSFDLVFIDADKADYPEYLERALPLLRPGGLIVADNV  167 (219)
T ss_pred             cHHHHHHhccCCCccEEEEeCChhhCHHHHHHHHHHhCCCcEEEEeec
Confidence            344555552346899776 653  234568999999999999987543

>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=89.20  E-value=1.2  Score=30.26  Aligned_cols=35  Identities=23%  Similarity=0.356  Sum_probs=29.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      .|+|+||+|+|.....+.+-..++.|...|.+..+
T Consensus        88 ~gvDiVle~tG~f~s~~~a~~hl~aGak~V~iSap  122 (343)
T PRK07729         88 LGIDIVIEATGKFNSKEKAILHVEAGAKKVILTAP  122 (343)
T ss_pred             cCCCEEEEccchhhhHhHHHHHHHcCCeEEEeCCC
Confidence            38999999999987777788888888888888754

>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional

Probab=89.17  E-value=1  Score=30.59  Aligned_cols=35  Identities=29%  Similarity=0.457  Sum_probs=29.7

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      .|+|+||+|+|....-+.+-..+..|...+.+..+
T Consensus        90 ~gvDiVle~tG~~~s~~~a~~~l~aGAk~V~iSap  124 (336)
T PRK13535         90 LGVDVVLDCTGVYGSREDGEAHIAAGAKKVLFSHP  124 (336)
T ss_pred             cCCCEEEEccchhhhHHHHHHHHHcCCEEEEecCC
Confidence            48999999999987677788888888888888765

>PRK08955 glyceraldehyde-3-phosphate dehydrogenase; Validated

Probab=89.06  E-value=0.9  Score=30.79  Aligned_cols=34  Identities=26%  Similarity=0.267  Sum_probs=29.7

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      |+|+||+|+|.....+.+-..+..|.+.|.+..+
T Consensus        88 gvDiVle~tG~~~s~~~a~~hl~aGak~V~iSap  121 (334)
T PRK08955         88 GCDVVIEASGVMKTKALLQAYLDQGVKRVVVTAP  121 (334)
T ss_pred             CCCEEEEccchhhcHHHHHHHHHCCCEEEEECCC
Confidence            8999999999987778888899988888888765

>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed

Probab=88.78  E-value=0.99  Score=30.65  Aligned_cols=34  Identities=29%  Similarity=0.364  Sum_probs=29.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      |+|+||+|+|.....+.+-..++.|...|.+..+
T Consensus        90 gvDiV~e~tG~f~s~~~a~~hl~aGak~V~iSap  123 (337)
T PRK07403         90 GIDLIIESTGVFVTKEGASKHIQAGAKKVLITAP  123 (337)
T ss_pred             CCCEEEeccchhhhHHHHHHHhhCCcEEEEeCCC
Confidence            8999999999987677788888888888888765

>PTZ00023 glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=88.67  E-value=1  Score=30.61  Aligned_cols=36  Identities=22%  Similarity=0.333  Sum_probs=30.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|+||+|+|....-+.+-..++.|.+.|.+..+.
T Consensus        89 ~gvDiVle~tG~~~s~~~a~~~l~aGak~V~iSap~  124 (337)
T PTZ00023         89 NGVDVVCESTGVFLTKEKAQAHLKGGAKKVIMSAPP  124 (337)
T ss_pred             cCCCEEEEecchhcCHHHHHHHhhCCCEEEEeCCCC
Confidence            489999999998776777888888888888887653

>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway

Probab=87.88  E-value=1.8  Score=24.32  Aligned_cols=31  Identities=23%  Similarity=0.282  Sum_probs=20.3

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      ..|++|||++.....+-+...|+.|=.++..
T Consensus        59 ~~dvvVE~t~~~~~~~~~~~~L~~G~~VVt~   89 (117)
T PF03447_consen   59 DIDVVVECTSSEAVAEYYEKALERGKHVVTA   89 (117)
T ss_dssp             T-SEEEE-SSCHHHHHHHHHHHHTTCEEEES
T ss_pred             CCCEEEECCCchHHHHHHHHHHHCCCeEEEE
Confidence            6999999988777555567777766555554

Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....

>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B

Probab=87.63  E-value=1.9  Score=30.35  Aligned_cols=36  Identities=22%  Similarity=0.252  Sum_probs=30.8

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|+||||+|.....+.+-..+..|.+.|.+..+.
T Consensus       164 ~gVDiViE~TG~f~s~e~a~~hl~aGAkkV~iSAP~  199 (442)
T PLN02237        164 LGIDIVIEGTGVFVDGPGAGKHIQAGAKKVIITAPA  199 (442)
T ss_pred             cCCCEEEEccChhhhHHHHHHHHhCCCEEEEECCCC
Confidence            489999999999877888889999998888887543

>PRK00536 speE spermidine synthase; Provisional

Probab=87.36  E-value=1.7  Score=28.49  Aligned_cols=35  Identities=9%  Similarity=-0.108  Sum_probs=27.7

Q ss_pred             CCCCcEEE-EccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104           14 GTGIDVSF-DCAGFNKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        14 ~~g~d~vi-d~~g~~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      .+.+|+|| |+.-.++-+..+.++|+++|.++.-+.
T Consensus       137 ~~~fDVIIvDs~~~~~fy~~~~~~L~~~Gi~v~Qs~  172 (262)
T PRK00536        137 IKKYDLIICLQEPDIHKIDGLKRMLKEDGVFISVAK  172 (262)
T ss_pred             CCcCCEEEEcCCCChHHHHHHHHhcCCCcEEEECCC
Confidence            35799766 767666657789999999999998754

>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]

Probab=87.05  E-value=3.1  Score=28.24  Aligned_cols=72  Identities=18%  Similarity=0.215  Sum_probs=45.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCC--cc--ccchhhhhc-CeEEEEeecc-CCCHHHHHHHHHc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHE--MT--VPLTPAAAR-EVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~--~~--~~~~~~~~~-~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      -|+|+|+||+|.-..-+.+-..+..+ ..-|+++.+...  ..  +..+.-.+. +.++.....+ ...+..++..+.+
T Consensus        88 ~gvdiVve~Tg~f~~~e~~~~hl~agGaKkV~isap~~~~~~~vv~gvn~~~~~~~~~iVsnaSCTTNcLap~~kvl~d  166 (335)
T COG0057          88 LGVDIVVECTGKFTGREKAEKHLKAGGAKKVLISAPGKDDVATVVYGVNHNYYDAGHTIVSNASCTTNCLAPVAKVLND  166 (335)
T ss_pred             cCccEEEECCCCccchhhHHHHHHhcCCCEEEEcCCCCCCccEEEEeccccccCCCCcEEEEccchhhhhHHHHHHHHH
Confidence            47999999999876667777788885 777777776543  22  222222222 4555544444 6667666666654

>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=86.47  E-value=1.6  Score=27.37  Aligned_cols=32  Identities=13%  Similarity=0.125  Sum_probs=24.6

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      ..+|+|+-....+......++.|++||+++..
T Consensus       144 ~~fD~I~~~~~~~~~~~~l~~~LkpgG~lvi~  175 (212)
T PRK13942        144 APYDRIYVTAAGPDIPKPLIEQLKDGGIMVIP  175 (212)
T ss_pred             CCcCEEEECCCcccchHHHHHhhCCCcEEEEE
Confidence            36898876555555567889999999998875

>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional

Probab=86.26  E-value=2.2  Score=26.32  Aligned_cols=32  Identities=19%  Similarity=0.348  Sum_probs=24.5

Q ss_pred             CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~   46 (105)
                      ..+|.||...+.   ...+..+.++|+++|+++..
T Consensus       110 ~~~D~V~~~~~~~~~~~~l~~~~~~LkpgG~lv~~  144 (198)
T PRK00377        110 EKFDRIFIGGGSEKLKEIISASWEIIKKGGRIVID  144 (198)
T ss_pred             CCCCEEEECCCcccHHHHHHHHHHHcCCCcEEEEE
Confidence            479999985543   33577888999999999864

>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]

Probab=85.46  E-value=1.7  Score=24.93  Aligned_cols=33  Identities=18%  Similarity=0.173  Sum_probs=23.9

Q ss_pred             CcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           17 IDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        17 ~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      +|++||++ .+......++.+...|.-+++|...
T Consensus        68 ~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTTG  100 (124)
T PF01113_consen   68 ADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTTG  100 (124)
T ss_dssp             -SEEEEES--HHHHHHHHHHHHHHT-EEEEE-SS
T ss_pred             CCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECCC
Confidence            89999999 5666778888888889888888654

In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....

>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=85.26  E-value=2  Score=29.01  Aligned_cols=32  Identities=25%  Similarity=0.397  Sum_probs=26.3

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      ..+|+|+.+.|........++.|+++|++++.
T Consensus       148 ~~fD~Ii~~~g~~~ip~~~~~~LkpgG~Lvv~  179 (322)
T PRK13943        148 APYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  179 (322)
T ss_pred             CCccEEEECCchHHhHHHHHHhcCCCCEEEEE
Confidence            35899999888776566789999999998874

>PRK01160 hypothetical protein; Provisional

Probab=84.21  E-value=7  Score=24.20  Aligned_cols=49  Identities=18%  Similarity=0.168  Sum_probs=32.8

Q ss_pred             hHHHHHHHHH---cCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104            3 AEEVEKIDKA---MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus         3 ~~~~~~~~~~---~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      .+..+.+++.   ...+-.+.|..-|-+.+..--.-..+|.|.++.+|.|..
T Consensus        98 ~el~~ai~~a~~~~~~~~~~~I~VdGEEDLa~lP~il~aP~gs~VlYGQP~e  149 (178)
T PRK01160         98 LALLRAIKKAFSLIERGKKVRIEVNGEEDLAVIPAVLYAPLGTVVAYGQPDE  149 (178)
T ss_pred             HHHHHHHHHHHHhhhcCCeEEEEEcChHHHHHHHHHHhcCCCCEEEeCCCCC
Confidence            3556677766   333445566656877755555666679999999998764

>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional

Probab=84.13  E-value=2.2  Score=26.58  Aligned_cols=32  Identities=16%  Similarity=0.185  Sum_probs=24.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      ..+|+|+-+.......+..++.|++||+++..
T Consensus       141 ~~fD~Ii~~~~~~~~~~~l~~~L~~gG~lvi~  172 (205)
T PRK13944        141 APFDAIIVTAAASTIPSALVRQLKDGGVLVIP  172 (205)
T ss_pred             CCccEEEEccCcchhhHHHHHhcCcCcEEEEE
Confidence            36898886655555467788999999999764

>PLN02272 glyceraldehyde-3-phosphate dehydrogenase

Probab=84.09  E-value=2.2  Score=29.93  Aligned_cols=35  Identities=17%  Similarity=0.310  Sum_probs=27.4

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|+||+|+|.....+.+...++.|..-+++..+.
T Consensus       174 gVDiVlesTG~f~s~e~a~~hl~aGAkkVVIdap~  208 (421)
T PLN02272        174 GAEYVVESSGVFTTVEKASAHLKGGAKKVVISAPS  208 (421)
T ss_pred             CCCEEEEcCchhccHHHHHHHhhCCCCEEEECCCC
Confidence            89999999999766778888888887555555553

>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit

Probab=83.81  E-value=3.2  Score=22.96  Aligned_cols=33  Identities=18%  Similarity=0.233  Sum_probs=24.5

Q ss_pred             CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      ..+|+|+-..+.   ...+..+.+.|+++|+++.-.
T Consensus        87 ~~~D~v~~~~~~~~~~~~l~~~~~~Lk~gG~li~~~  122 (124)
T TIGR02469        87 PEPDRVFIGGSGGLLQEILEAIWRRLRPGGRIVLNA  122 (124)
T ss_pred             CCCCEEEECCcchhHHHHHHHHHHHcCCCCEEEEEe
Confidence            468988865432   235888999999999988753

This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.

>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes

Probab=83.15  E-value=3.5  Score=26.03  Aligned_cols=67  Identities=9%  Similarity=-0.008  Sum_probs=39.8

Q ss_pred             HHHHHHHhhhcCCEEEEEcCCCCCccc--cchhhhhcCeEEEEeeccCCCHHHHHHHHHcCCCCCCCce
Q 040104           29 TMSTALSATRAGGKVCLVGMGHHEMTV--PLTPAAAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLV   95 (105)
Q Consensus        29 ~~~~~~~~l~~~G~~v~~g~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~g~i~~~~~i   95 (105)
                      .|..+-++|+++|.+++||-..-.-.+  +.+.-.-..++-+....+-.+++++.++..+..+.+...+
T Consensus       123 lf~~a~~~L~~gG~L~~YGPF~~~G~~ts~SN~~FD~sLr~rdp~~GiRD~e~v~~lA~~~GL~l~~~~  191 (204)
T PF06080_consen  123 LFAGAARLLKPGGLLFLYGPFNRDGKFTSESNAAFDASLRSRDPEWGIRDIEDVEALAAAHGLELEEDI  191 (204)
T ss_pred             HHHHHHHhCCCCCEEEEeCCcccCCEeCCcHHHHHHHHHhcCCCCcCccCHHHHHHHHHHCCCccCccc
Confidence            578888999999999999965422222  2221111111111111225788889888888877655433

The function of this family is unknown.

>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional

Probab=83.03  E-value=2.1  Score=29.19  Aligned_cols=32  Identities=25%  Similarity=0.481  Sum_probs=24.9

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      |+|+||||+|.-.....+...++.|..=|++.
T Consensus        92 gvDiVie~TG~f~~~~~a~~hl~~Gakkviis  123 (342)
T PTZ00353         92 GVQYVVECTGLYSTRSRCWGHVTGGAKGVFVA  123 (342)
T ss_pred             CCCEEEEcccccccHhhhhhhhhcCCCcEEEe
Confidence            89999999999866788888888764444443

>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]

Probab=82.04  E-value=5.8  Score=27.64  Aligned_cols=48  Identities=21%  Similarity=0.274  Sum_probs=33.4

Q ss_pred             hHHHHHHHHHc--CCCCcEEE-EccCCh--------------HHHHHHHHhhhcCCEEEEEcCCC
Q 040104            3 AEEVEKIDKAM--GTGIDVSF-DCAGFN--------------KTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus         3 ~~~~~~~~~~~--~~g~d~vi-d~~g~~--------------~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      +|+.+.+++.-  |..+|+|| |...-.              ..+..++++|+|+|+++...++.
T Consensus       275 ~Dvf~~l~~~~~~g~~fDlIilDPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~~~  339 (393)
T COG1092         275 GDVFKWLRKAERRGEKFDLIILDPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSCSR  339 (393)
T ss_pred             hhHHHHHHHHHhcCCcccEEEECCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEecCC
Confidence            45666777665  45899766 542211              14678999999999999987654

>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional

Probab=81.92  E-value=7.3  Score=24.45  Aligned_cols=40  Identities=10%  Similarity=0.189  Sum_probs=27.5

Q ss_pred             HHHHHHc-CCCCcEEEEcc-----CCh------------HHHHHHHHhhhcCCEEEEE
Q 040104            7 EKIDKAM-GTGIDVSFDCA-----GFN------------KTMSTALSATRAGGKVCLV   46 (105)
Q Consensus         7 ~~~~~~~-~~g~d~vid~~-----g~~------------~~~~~~~~~l~~~G~~v~~   46 (105)
                      +++.+.. .+.+|+|+-..     |.+            ..+..+.++|++||.+++.
T Consensus       107 ~~i~~~~~~~~~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~  164 (209)
T PRK11188        107 KALLERVGDSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVK  164 (209)
T ss_pred             HHHHHHhCCCCCCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence            4444444 45899988532     322            2478899999999999985

>PRK14967 putative methyltransferase; Provisional

Probab=81.55  E-value=8.1  Score=24.32  Aligned_cols=18  Identities=28%  Similarity=0.346  Sum_probs=14.9

Q ss_pred             HHHHHHhhhcCCEEEEEc
Q 040104           30 MSTALSATRAGGKVCLVG   47 (105)
Q Consensus        30 ~~~~~~~l~~~G~~v~~g   47 (105)
                      +..+.++|+++|+++.+-
T Consensus       142 l~~a~~~Lk~gG~l~~~~  159 (223)
T PRK14967        142 CDAAPALLAPGGSLLLVQ  159 (223)
T ss_pred             HHHHHHhcCCCcEEEEEE
Confidence            456889999999999763

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=81.52  E-value=1.6  Score=31.07  Aligned_cols=35  Identities=11%  Similarity=0.156  Sum_probs=30.7

Q ss_pred             CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~   50 (105)
                      ..|+++.++|....+. ..+..+++++.++.+|...
T Consensus       309 ~ADIVI~atGt~~iI~~e~~~~MKpGAiLINvGr~d  344 (476)
T PTZ00075        309 TADIFVTATGNKDIITLEHMRRMKNNAIVGNIGHFD  344 (476)
T ss_pred             cCCEEEECCCcccccCHHHHhccCCCcEEEEcCCCc
Confidence            6899999999877665 8999999999999998754

>PF01188 MR_MLE: Mandelate racemase / muconate lactonizing enzyme, C-terminal domain; InterPro: IPR013342 Mandelate racemase 5

Probab=81.47  E-value=4  Score=20.60  Aligned_cols=35  Identities=23%  Similarity=0.329  Sum_probs=24.5

Q ss_pred             HHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCC
Q 040104            6 VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGG   41 (105)
Q Consensus         6 ~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G   41 (105)
                      ++++++..|..+++.+|+-++-. ...+.++++.--
T Consensus         2 i~avr~~~g~~~~l~vDan~~~~-~~~a~~~~~~l~   36 (67)
T PF01188_consen    2 IRAVREAVGPDIDLMVDANQAWT-LEEAIRLARALE   36 (67)
T ss_dssp             HHHHHHHHSTTSEEEEE-TTBBS-HHHHHHHHHHHG
T ss_pred             HHHHHHhhCCCCeEEEECCCCCC-HHHHHHHHHHcC
Confidence            46778887778999999988865 666666555443

1.2.2 from EC (MR) and muconate lactonising enzyme 5.5.1.1 from EC (MLE) are two bacterial enzymes involved in aromatic acid catabolism. They catalyse mechanistically distinct reactions yet they are related at the level of their primary, quaternary (homooctamer) and tertiary structures [, ]. A number of other proteins also seem to be evolutionary related to these two enzymes. These include, various plasmid-encoded chloromuconate cycloisomerases 5.5.1.7 from EC, Escherichia coli protein rspA [], E. coli bifunctional DGOA protein, E. coli hypothetical proteins ycjG, yfaW and yidU and a hypothetical protein from Streptomyces ambofaciens []. This entry represents the C-terminal region of these proteins.; PDB: 3QLD_B 3CYJ_C 2QDD_B 3FVD_A 3H7V_A 2OZT_A 3NXL_A 1JDF_D 1JCT_B 1EC9_C ....

>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase

Probab=81.22  E-value=3.1  Score=26.04  Aligned_cols=31  Identities=16%  Similarity=0.166  Sum_probs=23.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      .+|+|+-....+.......+.|++||+++..
T Consensus       146 ~fD~Ii~~~~~~~~~~~~~~~L~~gG~lv~~  176 (215)
T TIGR00080       146 PYDRIYVTAAGPKIPEALIDQLKEGGILVMP  176 (215)
T ss_pred             CCCEEEEcCCcccccHHHHHhcCcCcEEEEE
Confidence            6898875544455566788999999998865

Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.

>KOG4300 consensus Predicted methyltransferase [General function prediction only]

Probab=81.15  E-value=1.8  Score=27.66  Aligned_cols=36  Identities=14%  Similarity=0.140  Sum_probs=26.7

Q ss_pred             HcCCCCcEEEEccC-----C-hHHHHHHHHhhhcCCEEEEEc
Q 040104           12 AMGTGIDVSFDCAG-----F-NKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        12 ~~~~g~d~vid~~g-----~-~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+..+|.|+.+.+     + ...+++.-++|+|+|++..+-
T Consensus       141 l~d~s~DtVV~TlvLCSve~~~k~L~e~~rlLRpgG~iifiE  182 (252)
T KOG4300|consen  141 LADGSYDTVVCTLVLCSVEDPVKQLNEVRRLLRPGGRIIFIE  182 (252)
T ss_pred             cccCCeeeEEEEEEEeccCCHHHHHHHHHHhcCCCcEEEEEe
Confidence            34457898887532     2 235889999999999999984

>COG1909 Uncharacterized protein conserved in archaea [Function unknown]

Probab=81.07  E-value=9.8  Score=23.25  Aligned_cols=49  Identities=22%  Similarity=0.198  Sum_probs=34.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE   52 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~   52 (105)
                      ++.+.+++.+.++=-..|..-|-+.+.....-.++|.|+++.+|.|...
T Consensus        94 el~~ai~~a~~~~k~~~I~V~GEEDLa~lp~i~~ap~~tvV~YGqP~~G  142 (167)
T COG1909          94 ELIKAIEKALEDGKRVRIFVDGEEDLAVLPAILYAPLGTVVLYGQPDEG  142 (167)
T ss_pred             HHHHHHHHHHhcCCcEEEEEeChhHHHHhHHHhhcCCCCEEEeCCCCCc
Confidence            4566777777333334455558887666677778899999999987643

>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]

Probab=80.58  E-value=3.8  Score=26.81  Aligned_cols=34  Identities=21%  Similarity=0.294  Sum_probs=27.4

Q ss_pred             CCCcEEE-EccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSF-DCAGFNKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vi-d~~g~~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|++| |..--...++.+.++|++||+++.+-.
T Consensus       162 ~~vDav~LDmp~PW~~le~~~~~Lkpgg~~~~y~P  196 (256)
T COG2519         162 EDVDAVFLDLPDPWNVLEHVSDALKPGGVVVVYSP  196 (256)
T ss_pred             cccCEEEEcCCChHHHHHHHHHHhCCCcEEEEEcC
Confidence            4688665 666656789999999999999999953

>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=80.34  E-value=2  Score=27.19  Aligned_cols=31  Identities=16%  Similarity=0.206  Sum_probs=26.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      .+|.|+-+.+.+..-...++-|++||+++..
T Consensus       138 PyD~I~Vtaaa~~vP~~Ll~QL~~gGrlv~P  168 (209)
T COG2518         138 PYDRIIVTAAAPEVPEALLDQLKPGGRLVIP  168 (209)
T ss_pred             CcCEEEEeeccCCCCHHHHHhcccCCEEEEE
Confidence            5899998888887557889999999999876

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	105
1e3j_A	352	Ketose Reductase (Sorbitol Dehydrogenase) From Silv		3e-21
1pl6_A	356	Human SdhNADHINHIBITOR COMPLEX Length = 356		3e-21
1pl7_A	356	Human Sorbitol Dehydrogenase (Apo) Length = 356		3e-21
3qe3_A	355	Sheep Liver Sorbitol Dehydrogenase Length = 355		6e-21
3m6i_A	363	L-Arabinitol 4-Dehydrogenase Length = 363		1e-15
3gfb_A	350	L-Threonine Dehydrogenase (Tktdh) From The Hyperthe		7e-07
2dfv_A	347	Hyperthermophilic Threonine Dehydrogenase From Pyro		4e-06
2d8a_A	348	Crystal Structure Of Ph0655 From Pyrococcus Horikos		4e-06
1e3l_A	376	P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase		3e-04
1e3e_A	376	Mouse Class Ii Alcohol Dehydrogenase Complex With N		3e-04
2dq4_A	343	Crystal Structure Of Threonine 3-Dehydrogenase Leng		5e-04

>pdb|1E3J|A Chain A, Ketose Reductase (Sorbitol Dehydrogenase) From Silverleaf Whitefly Length = 352

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/98 (44%), Positives = 64/98 (65%)
Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREV 65
           +E+I  A+G   +V+ DC+G  K ++  ++ TR GG + LVGMG   +TVPL  A ARE+
Sbjct: 230 IERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREI 289
Query: 66  DVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           D+  VFRY N +P+ LE + SG+ ++K LVTH F   Q
Sbjct: 290 DIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQ 327

>pdb|1PL6|A Chain A, Human SdhNADHINHIBITOR COMPLEX Length = 356

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 44/96 (45%), Positives = 62/96 (64%)
Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA R
Sbjct: 230 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEXTTVPLLHAAIR 289
Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF
Sbjct: 290 EVDIKGVFRYCNTWPVAISXLASKSVNVKPLVTHRF 325

>pdb|1PL7|A Chain A, Human Sorbitol Dehydrogenase (Apo) Length = 356

Iteration: 1
 Score = 96.7 bits (239), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 44/100 (44%), Positives = 63/100 (63%)
Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA R
Sbjct: 230 EIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIR 289
Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 290 EVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEK 329

>pdb|3QE3|A Chain A, Sheep Liver Sorbitol Dehydrogenase Length = 355

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 42/100 (42%), Positives = 64/100 (64%)
Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E  +K++  +G+  +V+ +C G   ++   + AT +GG + LVG+G    +VPL  AA R
Sbjct: 229 EIAKKVEGLLGSKPEVTIECTGVETSIQAGIYATHSGGTLVLVGLGSEMTSVPLVHAATR 288
Query: 64  EVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           EVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 289 EVDIKGVFRYCNTWPMAISMLASKSVNVKPLVTHRFPLEK 328

>pdb|3M6I|A Chain A, L-Arabinitol 4-Dehydrogenase Length = 363

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 38/98 (38%), Positives = 63/98 (64%), Gaps = 3/98 (3%)
Query: 4   EEVEKIDKAMGTGID--VSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA 61
           E  +KI ++ G GI+  V+ +C G   +++ A+ A + GGKV ++G+G +E+ +P   A+
Sbjct: 239 ESAKKIVESFG-GIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRAS 297
Query: 62  AREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
            REVD+   +RY NTWP  +  + +G +D+  LVTHRF
Sbjct: 298 VREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRF 335

>pdb|3GFB|A Chain A, L-Threonine Dehydrogenase (Tktdh) From The Hyperthermophilic Archaeon Thermococcus Kodakaraensis Length = 350

Iteration: 1
 Score = 48.9 bits (115), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 30/101 (29%), Positives = 52/101 (51%), Gaps = 4/101 (3%)
Query: 9   IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVP---LTPAAAREV 65
           +D   G G++V  + +G  K +   L A   GG+V L+G+   E+T+    L    A EV
Sbjct: 229 MDITDGAGVEVFLEFSGAPKALEQGLKAVTPGGRVSLLGLFPREVTIDFNNLIIFKALEV 288
Query: 66  DVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRF-GFSQKE 105
             +       TW      ++SGK+++ P++TH++ GF + E
Sbjct: 289 HGITGRHLWETWYTVSSLIQSGKLNLDPIITHKYKGFDKFE 329

>pdb|2DFV|A Chain A, Hyperthermophilic Threonine Dehydrogenase From Pyrococcus Horikoshii Length = 347

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ +EV  I    G G+DV  + +G  K +   L A    G+V L+G+   ++T+     
Sbjct: 222 DVVKEVXDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNL 279
Query: 61  AA-REVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRF-GFSQKE 105
              + + + G+       TW      L+SGK+++ P++TH++ GF + E
Sbjct: 280 IIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYE 328

>pdb|2D8A|A Chain A, Crystal Structure Of Ph0655 From Pyrococcus Horikoshii Ot3 Length = 348

Iteration: 1
 Score = 46.2 bits (108), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 55/109 (50%), Gaps = 6/109 (5%)
Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ +EV  I    G G+DV  + +G  K +   L A    G+V L+G+   ++T+     
Sbjct: 223 DVVKEVXDITD--GNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNL 280
Query: 61  AA-REVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRF-GFSQKE 105
              + + + G+       TW      L+SGK+++ P++TH++ GF + E
Sbjct: 281 IIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKYKGFDKYE 329

>pdb|1E3L|A Chain A, P47h Mutant Of Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 16  GIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAA-AREVD--VVGVF 71
           G+D S DCAG  +T+  A+  T  G G   +VG    EMT+P       R ++    G +
Sbjct: 265 GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSINGTFFGGW 324
Query: 72  RYKNTWPLCLEFLRSGKIDIKPLVTHRFGF 101
           +  ++ P  +   ++ K D+  LVTH   F
Sbjct: 325 KSVDSVPNLVSDYKNKKFDLDLLVTHALPF 354

>pdb|1E3E|A Chain A, Mouse Class Ii Alcohol Dehydrogenase Complex With Nadh Length = 376

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/90 (31%), Positives = 44/90 (48%), Gaps = 4/90 (4%)
Query: 16  GIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAA-AREVD--VVGVF 71
           G+D S DCAG  +T+  A+  T  G G   +VG    EMT+P       R ++    G +
Sbjct: 265 GVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGRSINGTFFGGW 324
Query: 72  RYKNTWPLCLEFLRSGKIDIKPLVTHRFGF 101
           +  ++ P  +   ++ K D+  LVTH   F
Sbjct: 325 KSVDSVPNLVSDYKNKKFDLDLLVTHALPF 354

>pdb|2DQ4|A Chain A, Crystal Structure Of Threonine 3-Dehydrogenase Length = 343

Iteration: 1
 Score = 39.3 bits (90), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 25/101 (24%), Positives = 47/101 (46%), Gaps = 3/101 (2%)
Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT-PAAARE 64
           +E + +  G+G++V  + +G    +   L A   GG+  ++G+    +   L      R 
Sbjct: 221 LEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRG 280
Query: 65  VDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           +   G+   R   TW      + SG++D+ PL+THR   S+
Sbjct: 281 ITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSR 321

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	105
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	4e-41
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	6e-41
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	1e-38
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	3e-35
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	2e-34
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	4e-31
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	2e-30
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	2e-25
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	4e-22
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	6e-20
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	3e-17
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	4e-15
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	2e-13
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	6e-12
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	1e-11
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	4e-11
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	2e-10
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	3e-10
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	4e-10
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	5e-10
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	7e-10
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	8e-09
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	8e-07
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	8e-06
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	1e-05
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	1e-05
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	2e-05
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	4e-05
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	2e-04
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	3e-04
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	6e-04

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1 Length = 352

 Score =  137 bits (347), Expect = 4e-41
 Identities = 44/103 (42%), Positives = 66/103 (64%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           + +  +E+I  A+G   +V+ DC+G  K ++  ++ TR GG + LVGMG   +TVPL  A
Sbjct: 225 EESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNA 284

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            ARE+D+  VFRY N +P+ LE + SG+ ++K LVTH F   Q
Sbjct: 285 CAREIDIKSVFRYCNDYPIALEMVASGRCNVKQLVTHSFKLEQ 327

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A Length = 356

 Score =  136 bits (346), Expect = 6e-41
 Identities = 44/103 (42%), Positives = 63/103 (61%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
              E   K++  +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  A
Sbjct: 227 SPQEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHA 286

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           A REVD+ GVFRY NTWP+ +  L S  +++KPLVTHRF   +
Sbjct: 287 AIREVDIKGVFRYCNTWPVAISMLASKSVNVKPLVTHRFPLEK 329

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa} Length = 363

 Score =  131 bits (332), Expect = 1e-38
 Identities = 34/103 (33%), Positives = 60/103 (58%), Gaps = 2/103 (1%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           + A+++ +     G    V+ +C G   +++ A+ A + GGKV ++G+G +E+ +P   A
Sbjct: 239 ESAKKIVES--FGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRA 296

Query: 61  AAREVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           + REVD+   +RY NTWP  +  + +G +D+  LVTHRF    
Sbjct: 297 SVREVDLQFQYRYCNTWPRAIRLVENGLVDLTRLVTHRFPLED 339

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A* Length = 370

 Score =  122 bits (308), Expect = 3e-35
 Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 2/105 (1%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ E +      +  G+DV  +CAG  +T+  +    +AGG V ++G+      V + P 
Sbjct: 238 DVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPF 297

Query: 61  AA--REVDVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
               RE+ V+G F          + + +G I+I  +++ R    +
Sbjct: 298 DILFRELRVLGSFINPFVHRRAADLVATGAIEIDRMISRRISLDE 342

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A* Length = 343

 Score =  119 bits (302), Expect = 2e-34
 Identities = 27/108 (25%), Positives = 50/108 (46%), Gaps = 5/108 (4%)

Query: 1   DIAEE--VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT 58
           +  EE  +E + +  G+G++V  + +G    +   L A   GG+  ++G+    +   L 
Sbjct: 214 NPLEEDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLA 273

Query: 59  PAA-AREVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                R +   G+   R   TW      + SG++D+ PL+THR   S+
Sbjct: 274 GELVMRGITAFGIAGRRLWQTWMQGTALVYSGRVDLSPLLTHRLPLSR 321

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A* Length = 348

 Score =  111 bits (279), Expect = 4e-31
 Identities = 27/102 (26%), Positives = 51/102 (50%), Gaps = 5/102 (4%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D+ +EV  I    G G+DV  + +G  K +   L A    G+V L+G+   ++T+     
Sbjct: 223 DVVKEVMDI--TDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNL 280

Query: 61  A-AREVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
              + + + G+       TW      L+SGK+++ P++TH++
Sbjct: 281 IIFKALTIYGITGRHLWETWYTVSRLLQSGKLNLDPIITHKY 322

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli} Length = 346

 Score =  109 bits (274), Expect = 2e-30
 Identities = 19/112 (16%), Positives = 39/112 (34%), Gaps = 11/112 (9%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
              +    +         +  + AG  +T+  A+       ++ LVG  H ++ +     
Sbjct: 216 SAPQMQSVLR--ELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATF 273

Query: 61  AA---REVDVVGVFRY------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                +E+ V+G +           W      L   K+ ++PL+ HR  F  
Sbjct: 274 GKILRKELTVIGSWMNYSSPWPGQEWETASRLLTERKLSLEPLIAHRGSFES 325

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A* Length = 357

 Score = 96.2 bits (240), Expect = 2e-25
 Identities = 18/110 (16%), Positives = 34/110 (30%), Gaps = 7/110 (6%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D  +   +    +   +D  ++  GF K    ++ A    G   L+G+           A
Sbjct: 227 DSRQTPVEDVPDVYEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGA 286

Query: 61  A-----AREVDVVGVFRYKN--TWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                      +VG             + F +  K  ++ LVT     S+
Sbjct: 287 FHREMVLHNKALVGSVNSHVEHFEAATVTFTKLPKWFLEDLVTGVHPLSE 336

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima} Length = 404

 Score = 87.8 bits (218), Expect = 4e-22
 Identities = 17/110 (15%), Positives = 38/110 (34%), Gaps = 10/110 (9%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRA---GGKVCLVGMGHHEMTVPL 57
           +  E V       G G  +  +  G  + +   +        G    +  +   +  +PL
Sbjct: 269 NFVEAVLDYT--NGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPL 326

Query: 58  TPAA--AREVDVVGVFRYK--NTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           T      R   +VG   +    T+P  +  + SG +D+  +++      +
Sbjct: 327 TGEVFQVRRAQIVGSQGHSGHGTFPRVISLMASG-MDMTKIISKTVSMEE 375

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1 Length = 380

 Score = 81.5 bits (202), Expect = 6e-20
 Identities = 18/108 (16%), Positives = 35/108 (32%), Gaps = 5/108 (4%)

Query: 1   DIAEEVEKI-DKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTP 59
            + E  + I D   G G D   +  G ++ +       R GG   + G+   +  VP   
Sbjct: 251 SVEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKV 310

Query: 60  AAAR---EVDVVGVFRYKNT-WPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                       G++    + +   +         +  L+THR    +
Sbjct: 311 YEWLVLKNATFKGIWVSDTSHFVKTVSITSRNYQLLSKLITHRLPLKE 358

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A* Length = 366

 Score = 74.0 bits (182), Expect = 3e-17
 Identities = 19/112 (16%), Positives = 37/112 (33%), Gaps = 13/112 (11%)

Query: 3   AEEVEKIDKAMGTGIDVSFDCAGFNKT-MSTALSATRAGGKVCLVGMGHHEMTVPLTPAA 61
           +   +K+  ++G   DV  D  G +   +   +      G + L G      +VPL    
Sbjct: 234 SNGYDKLKDSVG-KFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFS-TSGSVPLDYKT 291

Query: 62  A-----REVDVVGVFRYKNT-WPLCLEFLRSGKI----DIKPLVTHRFGFSQ 103
                     ++G+   +   +   +  L S K       K L+T     + 
Sbjct: 292 LQEIVHTNKTIIGLVNGQKPHFQQAVVHLASWKTLYPKAAKMLITKTVSIND 343

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A* Length = 347

 Score = 68.0 bits (167), Expect = 4e-15
 Identities = 22/104 (21%), Positives = 41/104 (39%), Gaps = 5/104 (4%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D   E+ +I +    G+D   D     KT+S    A    GK  +VG+   ++       
Sbjct: 227 DPLAEIRRITE--SKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLI 284

Query: 61  AAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              E+  VG     ++ +   +    +GK  +KP++T      +
Sbjct: 285 TLSEIQFVGSLVGNQSDFLGIMRLAEAGK--VKPMITKTMKLEE 326

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A* Length = 345

 Score = 63.4 bits (155), Expect = 2e-13
 Identities = 21/106 (19%), Positives = 35/106 (33%), Gaps = 10/106 (9%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
             A+ + ++    G G    FD  G   T+ TA       G + +VG+            
Sbjct: 226 GAADAIRELTG--GQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGFFM 283

Query: 61  AAREVDVVGVFRYKNTW---PLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                 VV    Y  T       +   R+G++D   + T  F   +
Sbjct: 284 IPFGASVVTP--YWGTRSELMEVVALARAGRLD---IHTETFTLDE 324

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1 Length = 371

 Score = 59.1 bits (144), Expect = 6e-12
 Identities = 19/104 (18%), Positives = 35/104 (33%), Gaps = 7/104 (6%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA--AR 63
           V  I +    G++ + +  G  + +   + A    GK+ +VG      T           
Sbjct: 248 VAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLG 307

Query: 64  EVDVVGVF----RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              ++GV       K   P  +   + GK     LV   + F +
Sbjct: 308 GKTILGVVEGSGSPKKFIPELVRLYQQGKFPFDQLVKF-YAFDE 350

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus} Length = 344

 Score = 58.0 bits (141), Expect = 1e-11
 Identities = 18/105 (17%), Positives = 33/105 (31%), Gaps = 8/105 (7%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D    + K+    G G  ++ D  G  +T           G + LVGM    +++     
Sbjct: 225 DAESLINKLTD--GLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDT 282

Query: 61  AAREVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           A     ++G       +   + +    SGKI        +     
Sbjct: 283 AVWNKKLLGSNYGSLNDLEDV-VRLSESGKIK---PYIIKVPLDD 323

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1 Length = 359

 Score = 56.5 bits (137), Expect = 4e-11
 Identities = 19/106 (17%), Positives = 38/106 (35%), Gaps = 11/106 (10%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D  ++V ++ +  G G++V+ D  G   T+          G++ +VG G  E+  P    
Sbjct: 241 DPVKQVMELTR--GRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYG-GELRFPTIRV 297

Query: 61  AAREVDVVGVFRYKNTW---PLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            + EV   G       +      +     GK+    +        +
Sbjct: 298 ISSEVSFEGS--LVGNYVELHELVTLALQGKVR---VEVDIHKLDE 338

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A* Length = 373

 Score = 54.9 bits (133), Expect = 2e-10
 Identities = 27/104 (25%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPA---A 61
            E + +    G+D SF+C G  K M  AL A   G G   +VG+      +   P     
Sbjct: 250 QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVT 309

Query: 62  AREVD--VVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            R       G ++   + P  +    S KI +   VTH   F +
Sbjct: 310 GRTWKGTAFGGWKSVESVPKLVSEYMSKKIKVDEFVTHNLSFDE 353

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A* Length = 373

 Score = 54.5 bits (132), Expect = 3e-10
 Identities = 24/108 (22%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAAARE 64
            E I +    G+D + +CAG  +TM  AL +T  G G   ++G+      +PL P     
Sbjct: 251 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDP----- 305

Query: 65  VDVVGVFRYKNTW---------PLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           + ++     K +             ++     KI++  LV+ +    Q
Sbjct: 306 LLLLTGRSLKGSVFGGFKGEEVSRLVDDYMKKKINVNFLVSTKLTLDQ 353

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A* Length = 376

 Score = 53.8 bits (130), Expect = 4e-10
 Identities = 28/102 (27%), Positives = 46/102 (45%), Gaps = 4/102 (3%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTV-PLTPAAAR 63
            + I +    G+D S DCAG  +T+  A+  T  G G   +VG    EMT+  +     R
Sbjct: 255 QDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR 314

Query: 64  EV--DVVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
            +     G ++  ++ P  +   ++ K D+  LVTH   F  
Sbjct: 315 SINGTFFGGWKSVDSVPNLVSDYKNKKFDLDLLVTHALPFES 356

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ... Length = 374

 Score = 53.8 bits (130), Expect = 5e-10
 Identities = 26/109 (23%), Positives = 46/109 (42%), Gaps = 16/109 (14%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAAARE 64
            E + +    G+D SF+  G   TM TALS  +   G   +VG+      + + P     
Sbjct: 251 QEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNP----- 305

Query: 65  VDVV----------GVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           + ++          G F+ K++ P  +    + K  + PL+TH   F +
Sbjct: 306 MLLLSGRTWKGAIFGGFKSKDSVPKLVADFMAKKFALDPLITHVLPFEK 354

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A Length = 352

 Score = 53.3 bits (129), Expect = 7e-10
 Identities = 20/107 (18%), Positives = 36/107 (33%), Gaps = 12/107 (11%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           DI E++ K     G G+D      G   T + A+   + G  +  V        + +  +
Sbjct: 222 DIVEQILKATD--GKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRS 279

Query: 61  AA----REVDVVG----VFRYKNTWPLCLEFLRSGKIDIKPLVTHRF 99
                     + G      R        ++ +   ++D   LVTH F
Sbjct: 280 EWGVGMGHKHIHGGLCPGGRL--RMERLIDLVFYKRVDPSKLVTHVF 324

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1 Length = 374

 Score = 50.3 bits (121), Expect = 8e-09
 Identities = 26/103 (25%), Positives = 40/103 (38%), Gaps = 5/103 (4%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEM--TVPLTPAAA 62
            + + K    G+D S +C G    M  AL +   G G   LVG        T P+   A 
Sbjct: 252 SQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAG 311

Query: 63  REVD--VVGVFRYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
           R     + G F+ K+  P  ++     K+ +   +THR     
Sbjct: 312 RTWKGSMFGGFKGKDGVPKMVKAYLDKKVKLDEFITHRMPLES 354

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021} Length = 363

 Score = 44.5 bits (106), Expect = 8e-07
 Identities = 20/105 (19%), Positives = 44/105 (41%), Gaps = 7/105 (6%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTP 59
           D  E V  +      G D   + AG    +  +L A    G++ ++G +   E++ P+ P
Sbjct: 244 DWVERVYALTG--DRGADHILEIAG-GAGLGQSLKAVAPDGRISVIGVLEGFEVSGPVGP 300

Query: 60  AAAREVDVVGVF-RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              +   V G+   ++      +  +      +KP++  R+ F++
Sbjct: 301 LLLKSPVVQGISVGHRRALEDLVGAVDRLG--LKPVIDMRYKFTE 343

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A Length = 364

 Score = 42.0 bits (99), Expect = 8e-06
 Identities = 14/114 (12%), Positives = 35/114 (30%), Gaps = 14/114 (12%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTP 59
           +    +++  K  G    ++ +C G  K+ +         G +   G M    +T+P + 
Sbjct: 230 EFGPTIKEWIKQSGGEAKLALNCVG-GKSSTGIARKLNNNGLMLTYGGMSFQPVTIPTSL 288

Query: 60  AAAREVDVVGVF----------RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              +     G +             +T    + +   GK  +    +    +  
Sbjct: 289 YIFKNFTSAGFWVTELLKNNKELKTSTLNQIIAWYEEGK--LTDAKSIETLYDG 340

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A Length = 456

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 16/106 (15%), Positives = 35/106 (33%), Gaps = 9/106 (8%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTP 59
              + + ++    G  ID+ F+  G  +T   ++  TR GG +        +        
Sbjct: 301 RFGKRIRELTG--GEDIDIVFEHPG-RETFGASVFVTRKGGTITTCASTSGYMHEYDNRY 357

Query: 60  AAAREVDVVGVF--RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
                  ++G     Y+  W      +  G+I   P ++  +    
Sbjct: 358 LWMSLKRIIGSHFANYREAWEA-NRLIAKGRI--HPTLSKVYSLED 400

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A Length = 357

 Score = 41.1 bits (97), Expect = 1e-05
 Identities = 13/115 (11%), Positives = 34/115 (29%), Gaps = 17/115 (14%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTVPLTP 59
              E              ++ +C G  K+ +  L     GG +   G M    +   ++ 
Sbjct: 227 RRPEMKNFF--KDMPQPRLALNCVG-GKSSTELLRQLARGGTMVTYGGMAKQPVVASVSL 283

Query: 60  AAAREVDVVGVF-----------RYKNTWPLCLEFLRSGKIDIKPLVTHRFGFSQ 103
              +++ + G +           ++K       + +R G+  +      +     
Sbjct: 284 LIFKDLKLRGFWLSQWKKDHSPDQFKELILTLCDLIRRGQ--LTAPACSQVPLQD 336

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida} Length = 398

 Score = 40.7 bits (96), Expect = 2e-05
 Identities = 16/132 (12%), Positives = 32/132 (24%), Gaps = 32/132 (24%)

Query: 4   EEVEKIDKAM--GTGIDVSFDCAGF--------------NKTMSTALSATRAGGKVCLVG 47
             +      +     +D   D  GF              N  +++     RAGG + + G
Sbjct: 240 APLRDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPG 299

Query: 48  MGHHEMTVPLTPAAAREVDVV--GVFRYKN------------TWPLCLEFLRSGKIDIKP 93
           +       P+   A      +  G    K+                  E +   ++    
Sbjct: 300 IYVGSDPDPVNKDAGSGRLHLDFGKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLS 359

Query: 94  --LVTHRFGFSQ 103
             +        Q
Sbjct: 360 KVMNIEVITLDQ 371

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1 Length = 398

 Score = 39.6 bits (93), Expect = 4e-05
 Identities = 15/123 (12%), Positives = 34/123 (27%), Gaps = 36/123 (29%)

Query: 14  GTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVG----------- 47
              +D + D  GF                  +++ +  TR  GK+ + G           
Sbjct: 252 EPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVD 311

Query: 48  --MGHHEMTVPLTPAAAREVDVVG----VFRYKNTWPLCLEFLRSGKIDIKPLV-THRFG 100
                  +++      A+          V +Y       ++ +   +I+I  +V      
Sbjct: 312 AAAKIGSLSIRFGLGWAKSHSFHTGQTPVMKY---NRALMQAIMWDRINIAEVVGVQVIS 368

Query: 101 FSQ 103
              
Sbjct: 369 LDD 371

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A* Length = 340

 Score = 37.5 bits (88), Expect = 2e-04
 Identities = 14/65 (21%), Positives = 24/65 (36%), Gaps = 1/65 (1%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREV 65
              + K +G G       A   K  S A+   R GG + L G+   +   P+     + +
Sbjct: 223 AAWLQKEIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGI 281

Query: 66  DVVGV 70
            + G 
Sbjct: 282 TIRGS 286

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii} Length = 321

 Score = 37.2 bits (87), Expect = 3e-04
 Identities = 17/108 (15%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 3   AEEV-----EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL 57
           AE+      E    A+ T +D   D  G       ++   +  G   +V +        +
Sbjct: 197 AEQCINYHEEDFLLAISTPVDAVIDLVG-GDVGIQSIDCLKETGC--IVSVPTITAGRVI 253

Query: 58  TPAAAREVDVVGVFRYKNTWPL--CLEFLRSGKIDIKPLVTHRFGFSQ 103
             A  +     G+ +  N   L    + +   K  ++  ++  F  S+
Sbjct: 254 EVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDK--LRIEISRIFQLSE 299

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A Length = 339

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 16/69 (23%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPA 60
           D A+ +    K    G+  +   A       +A ++ R GG   LVG+   EM +P+   
Sbjct: 219 DAAKFM----KEKVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDT 274

Query: 61  AAREVDVVG 69
               + ++G
Sbjct: 275 VLNGIKIIG 283

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
3m6i_A	363	L-arabinitol 4-dehydrogenase; medium chain dehydro	99.79
1pl8_A	356	Human sorbitol dehydrogenase; NAD, oxidoreductase;	99.76
4ej6_A	370	Putative zinc-binding dehydrogenase; structural ge	99.75
2dq4_A	343	L-threonine 3-dehydrogenase; NAD-dependent, oxidor	99.71
1e3j_A	352	NADP(H)-dependent ketose reductase; oxidoreductase	99.71
3ip1_A	404	Alcohol dehydrogenase, zinc-containing; structural	99.7
4a2c_A	346	Galactitol-1-phosphate 5-dehydrogenase; oxidoreduc	99.7
2d8a_A	348	PH0655, probable L-threonine 3-dehydrogenase; pyro	99.69
3fpc_A	352	NADP-dependent alcohol dehydrogenase; oxydoreducta	99.68
1e3i_A	376	Alcohol dehydrogenase, class II; HET: NAD; 2.08A {	99.67
3uko_A	378	Alcohol dehydrogenase class-3; alcohol dehydrogena	99.67
1p0f_A	373	NADP-dependent alcohol dehydrogenase; ADH topology	99.67
4eez_A	348	Alcohol dehydrogenase 1; site-saturation mutagenes	99.66
1vj0_A	380	Alcohol dehydrogenase, zinc-containing; TM0436, st	99.65
1f8f_A	371	Benzyl alcohol dehydrogenase; rossmann fold, oxido	99.65
3uog_A	363	Alcohol dehydrogenase; structural genomics, protei	99.65
2jhf_A	374	Alcohol dehydrogenase E chain; oxidoreductase, met	99.65
1cdo_A	374	Alcohol dehydrogenase; oxidoreductase, oxidoreduct	99.64
2fzw_A	373	Alcohol dehydrogenase class III CHI chain; S-nitro	99.64
3jv7_A	345	ADH-A; dehydrogenase, nucleotide binding, rossmann	99.63
2h6e_A	344	ADH-4, D-arabinose 1-dehydrogenase; rossman fold,	99.61
2b5w_A	357	Glucose dehydrogenase; nucleotide binding motif, o	99.61
2dph_A	398	Formaldehyde dismutase; dismutation of aldehydes,	99.6
4a0s_A	447	Octenoyl-COA reductase/carboxylase; oxidoreductase	99.6
3krt_A	456	Crotonyl COA reductase; structural genomics, prote	99.6
1jvb_A	347	NAD(H)-dependent alcohol dehydrogenase; archaeon,	99.59
4dup_A	353	Quinone oxidoreductase; PSI-biology, structural ge	99.58
2eih_A	343	Alcohol dehydrogenase; zinc ION binding protein, s	99.58
3gaz_A	343	Alcohol dehydrogenase superfamily protein; oxidore	99.56
1rjw_A	339	ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD	99.55
3pi7_A	349	NADH oxidoreductase; groes-like fold, NAD(P)-bindi	99.55
3qwb_A	334	Probable quinone oxidoreductase; rossmann fold, qu	99.54
4a27_A	349	Synaptic vesicle membrane protein VAT-1 homolog-L;	99.54
2cdc_A	366	Glucose dehydrogenase glucose 1-dehydrogenase, DHG	99.54
3s2e_A	340	Zinc-containing alcohol dehydrogenase superfamily;	99.54
1kol_A	398	Formaldehyde dehydrogenase; oxidoreductase; HET: N	99.52
1h2b_A	359	Alcohol dehydrogenase; oxidoreductase, archaea, hy	99.52
4eye_A	342	Probable oxidoreductase; structural genomics, niai	99.5
2hcy_A	347	Alcohol dehydrogenase 1; tetramer of asymmetric di	99.5
4b7c_A	336	Probable oxidoreductase; NADP cofactor, rossmann f	99.49
1gu7_A	364	Enoyl-[acyl-carrier-protein] reductase [NADPH, B-s	99.48
3jyn_A	325	Quinone oxidoreductase; rossmann fold, protein-NAD	99.48
2j3h_A	345	NADP-dependent oxidoreductase P1; double bond redu	99.47
2j8z_A	354	Quinone oxidoreductase; medium-chain dehydrogenase	99.46
3gqv_A	371	Enoyl reductase; medium-chain reductase (MDR super	99.46
1wly_A	333	CAAR, 2-haloacrylate reductase; NADPH-dependent ox	99.46
1yqd_A	366	Sinapyl alcohol dehydrogenase; lignin, monolignol,	99.46
2cf5_A	357	Atccad5, CAD, cinnamyl alcohol dehydrogenase; lign	99.45
3two_A	348	Mannitol dehydrogenase; cinnamyl-alcohol dehydroge	99.44
1yb5_A	351	Quinone oxidoreductase; medium-chain dehydrogenase	99.44
3fbg_A	346	Putative arginate lyase; structural genomics, unkn	99.42
1qor_A	327	Quinone oxidoreductase; HET: NAP; 2.20A {Escherich	99.41
4dvj_A	363	Putative zinc-dependent alcohol dehydrogenase Pro;	99.41
3gms_A	340	Putative NADPH:quinone reductase; structural genom	99.4
1uuf_A	369	YAHK, zinc-type alcohol dehydrogenase-like protein	99.38
1piw_A	360	Hypothetical zinc-type alcohol dehydrogenase- like	99.37
1zsy_A	357	Mitochondrial 2-enoyl thioester reductase; medium-	99.36
2c0c_A	362	Zinc binding alcohol dehydrogenase, domain contain	99.36
2zb4_A	357	Prostaglandin reductase 2; rossmann fold, alternat	99.34
1tt7_A	330	YHFP; alcohol dehydrogenase, Zn-dependent, NAD, st	99.34
3slk_A	795	Polyketide synthase extender module 2; rossmann fo	99.32
1v3u_A	333	Leukotriene B4 12- hydroxydehydrogenase/prostaglan	99.31
3nx4_A	324	Putative oxidoreductase; csgid, structural genomic	99.3
3tqh_A	321	Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella	99.29
1iz0_A	302	Quinone oxidoreductase; APO-enzyme, riken structur	99.27
3goh_A	315	Alcohol dehydrogenase, zinc-containing; NP_718042.	99.2
1xa0_A	328	Putative NADPH dependent oxidoreductases; structur	99.19
3iup_A	379	Putative NADPH:quinone oxidoreductase; YP_296108.1	99.09
1pqw_A	198	Polyketide synthase; rossmann fold, dimer, structu	99.07
2vn8_A	375	Reticulon-4-interacting protein 1; mitochondrion,	99.03
2vz8_A	2512	Fatty acid synthase; transferase, phosphopantethei	98.86
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	97.28
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	96.65
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	96.48
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	96.19
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	96.08
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	94.48
2yvl_A	248	TRMI protein, hypothetical protein; tRNA, methyltr	93.87
2nyu_A	196	Putative ribosomal RNA methyltransferase 2; SAM, s	92.76
3cea_A	346	MYO-inositol 2-dehydrogenase; NP_786804.1, oxidore	92.07
3fpf_A	298	Mtnas, putative uncharacterized protein; thermonic	90.56
3pym_A	332	GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase	88.79
3v1y_O	337	PP38, glyceraldehyde-3-phosphate dehydrogenase, cy	88.49
3hm2_A	178	Precorrin-6Y C5,15-methyltransferase; alpha-beta-s	88.38
1ej0_A	180	FTSJ; methyltransferase, adoMet, adenosyl methioni	88.11
1p91_A	269	Ribosomal RNA large subunit methyltransferase A; R	87.65
3njr_A	204	Precorrin-6Y methylase; methyltransferase, decarbo	86.92
3e05_A	204	Precorrin-6Y C5,15-methyltransferase (decarboxyla;	86.84
3rc1_A	350	Sugar 3-ketoreductase; sugar biosynthesis, TDP bin	86.77
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	86.58
1rm4_O	337	Glyceraldehyde 3-phosphate dehydrogenase A; rossma	86.38
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	86.09
2x5j_O	339	E4PDH, D-erythrose-4-phosphate dehydrogenase; oxid	85.83
4hkt_A	331	Inositol 2-dehydrogenase; structural genomics, nys	85.51
3tfw_A	248	Putative O-methyltransferase; PSI-biology, nysgrc,	85.43
1i9g_A	280	Hypothetical protein RV2118C; mtase, adoMet, cryst	84.98
2pwy_A	258	TRNA (adenine-N(1)-)-methyltransferase; mtase, ado	84.85
3lvf_P	338	GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase	84.81
3e18_A	359	Oxidoreductase; dehydrogenase, NAD-binding, struct	84.8
2pbf_A	227	Protein-L-isoaspartate O-methyltransferase beta-A	84.66
3duw_A	223	OMT, O-methyltransferase, putative; alternating of	84.64
1u8f_O	335	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, l	84.59
2glx_A	332	1,5-anhydro-D-fructose reductase; NADP(H) dependen	84.58
3db2_A	354	Putative NADPH-dependent oxidoreductase; two domai	84.37
3e9m_A	330	Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA,	84.18
2yxe_A	215	Protein-L-isoaspartate O-methyltransferase; rossma	84.06
3i23_A	349	Oxidoreductase, GFO/IDH/MOCA family; structural ge	84.03
3kux_A	352	Putative oxidoreductase; oxidoreductase family, cs	83.69
1gad_O	330	D-glyceraldehyde-3-phosphate dehydrogenase; oxidor	83.58
2hnk_A	239	SAM-dependent O-methyltransferase; modified rossma	83.5
3doc_A	335	Glyceraldehyde 3-phosphate dehydrogenase; ssgcid,	83.39
3ids_C	359	GAPDH, glyceraldehyde-3-phosphate dehydrogenase, g	83.26
1nvm_B	312	Acetaldehyde dehydrogenase (acylating), 4-hydroxy-	83.26
3dou_A	191	Ribosomal RNA large subunit methyltransferase J; c	83.08
1o54_A	277	SAM-dependent O-methyltransferase; TM0748, structu	83.02
3mb5_A	255	SAM-dependent methyltransferase; RNA methyltransfe	82.82
2ld4_A	176	Anamorsin; methyltransferase-like fold, alpha/beta	82.78
3eey_A	197	Putative rRNA methylase; rRNA methylation, S-adeno	82.29
2ep7_A	342	GAPDH, glyceraldehyde-3-phosphate dehydrogenase; o	81.96
3lbf_A	210	Protein-L-isoaspartate O-methyltransferase; modifi	81.84
2d2i_A	380	Glyceraldehyde 3-phosphate dehydrogenase; rossmann	81.79
1r18_A	227	Protein-L-isoaspartate(D-aspartate)-O-methyltrans;	81.75
3euw_A	344	MYO-inositol dehydrogenase; protein structure init	81.64
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	81.64
3evn_A	329	Oxidoreductase, GFO/IDH/MOCA family; structural ge	81.6
3fhl_A	362	Putative oxidoreductase; NAD-binding domain, PSI-2	81.54
1i1n_A	226	Protein-L-isoaspartate O-methyltransferase; S-aden	81.47
1fbn_A	230	MJ fibrillarin homologue; MJ proteins, ribosomal R	81.31
4dib_A	345	GAPDH, glyceraldehyde 3-phosphate dehydrogenase; n	81.01
1obf_O	335	Glyceraldehyde 3-phosphate dehydrogenase; glycolyt	80.92
3b1j_A	339	Glyceraldehyde 3-phosphate dehydrogenase (NADP+);	80.81
2gpy_A	233	O-methyltransferase; structural genomics, PSI, pro	80.49

>3m6i_A L-arabinitol 4-dehydrogenase; medium chain dehydrogenase/reductase, oxidoreductase; HET: NAD; 2.60A {Neurospora crassa}

Probab=99.79  E-value=1.1e-18  Score=115.10  Aligned_cols=103  Identities=35%  Similarity=0.706  Sum_probs=92.8

Q ss_pred             hhHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHH
Q 040104            2 IAEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLC   80 (105)
Q Consensus         2 ~~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~   80 (105)
                      .+++.+++++.+ +.|+|++|||+|++..+..++++++++|+++.+|.......++...+.++++++.|++.+.++++++
T Consensus       237 ~~~~~~~v~~~t~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  316 (363)
T 3m6i_A          237 AEESAKKIVESFGGIEPAVALECTGVESSIAAAIWAVKFGGKVFVIGVGKNEIQIPFMRASVREVDLQFQYRYCNTWPRA  316 (363)
T ss_dssp             HHHHHHHHHHHTSSCCCSEEEECSCCHHHHHHHHHHSCTTCEEEECCCCCSCCCCCHHHHHHHTCEEEECCSCSSCHHHH
T ss_pred             hHHHHHHHHHHhCCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEccCCCCccccHHHHHhcCcEEEEccCCHHHHHHH
Confidence            367788999999 5699999999999877999999999999999999876666677778899999999998778899999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|+++++++|+++|||+++
T Consensus       317 ~~l~~~g~i~~~~~i~~~~~l~~~  340 (363)
T 3m6i_A          317 IRLVENGLVDLTRLVTHRFPLEDA  340 (363)
T ss_dssp             HHHHHTTSSCCGGGEEEEEEGGGH
T ss_pred             HHHHHhCCCChHHceeeeeeHHHH
Confidence            999999999999999999999985

>1pl8_A Human sorbitol dehydrogenase; NAD, oxidoreductase; HET: NAD; 1.90A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 1pl7_A 1pl6_A* 3qe3_A

Probab=99.76  E-value=6.6e-18  Score=111.21  Aligned_cols=102  Identities=43%  Similarity=0.807  Sum_probs=89.7

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLE   82 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~   82 (105)
                      +++.+++++.+++++|++||++|++..+..++++++++|+++.+|....+..+++..++++++++.|++.++.+++++++
T Consensus       229 ~~~~~~i~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  308 (356)
T 1pl8_A          229 QEIARKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAIS  308 (356)
T ss_dssp             HHHHHHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHH
T ss_pred             chHHHHHHHHhCCCCCEEEECCCChHHHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHhcceEEEEecccHHHHHHHHH
Confidence            56677888888778999999999987799999999999999999976555667777788999999998877788999999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|+++++++|+++|||+++
T Consensus       309 l~~~g~i~~~~~i~~~~~l~~~  330 (356)
T 1pl8_A          309 MLASKSVNVKPLVTHRFPLEKA  330 (356)
T ss_dssp             HHHTTSCCCGGGEEEEEEGGGH
T ss_pred             HHHcCCCChHHheEEEecHHHH
Confidence            9999999888999999999985

>4ej6_A Putative zinc-binding dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium; 1.89A {Sinorhizobium meliloti} PDB: 4ejm_A*

Probab=99.75  E-value=3e-18  Score=113.42  Aligned_cols=102  Identities=24%  Similarity=0.448  Sum_probs=89.4

Q ss_pred             hHHHHHHHH---HcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeeccCCCH
Q 040104            3 AEEVEKIDK---AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRYKNTW   77 (105)
Q Consensus         3 ~~~~~~~~~---~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~~~~~   77 (105)
                      +++.+.+++   .+++|+|++|||+|++..+..++++++++|+++.+|....  +.+++...++.+++++.|++.+..++
T Consensus       237 ~~~~~~i~~~~~~~~gg~Dvvid~~G~~~~~~~~~~~l~~~G~vv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  316 (370)
T 4ej6_A          237 GDVVEAIAGPVGLVPGGVDVVIECAGVAETVKQSTRLAKAGGTVVILGVLPQGEKVEIEPFDILFRELRVLGSFINPFVH  316 (370)
T ss_dssp             SCHHHHHHSTTSSSTTCEEEEEECSCCHHHHHHHHHHEEEEEEEEECSCCCTTCCCCCCHHHHHHTTCEEEECCSCTTCH
T ss_pred             cCHHHHHHhhhhccCCCCCEEEECCCCHHHHHHHHHHhccCCEEEEEeccCCCCccccCHHHHHhCCcEEEEeccChHHH
Confidence            356677777   6756999999999988779999999999999999997654  45677778899999999998887789


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++|+++++++|+++|||+++
T Consensus       317 ~~~~~l~~~g~i~~~~~i~~~~~l~~~  343 (370)
T 4ej6_A          317 RRAADLVATGAIEIDRMISRRISLDEA  343 (370)
T ss_dssp             HHHHHHHHTTCSCCGGGEEEEECGGGH
T ss_pred             HHHHHHHHcCCCChhHcEEEEEEHHHH
Confidence            999999999999999999999999985

>2dq4_A L-threonine 3-dehydrogenase; NAD-dependent, oxidoreductase, structural genomics, NPPSFA; HET: MES; 2.50A {Thermus thermophilus} PDB: 2ejv_A*

Probab=99.71  E-value=1.6e-17  Score=108.87  Aligned_cols=102  Identities=24%  Similarity=0.472  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc--CCCHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY--KNTWPL   79 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~~   79 (105)
                      +++.+.+++.+++++|++||++|++..+..++++++++|+++.+|.+..+..+++ ..++.+++++.|++.+  +.++++
T Consensus       218 ~~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  297 (343)
T 2dq4_A          218 EDLLEVVRRVTGSGVEVLLEFSGNEAAIHQGLMALIPGGEARILGIPSDPIRFDLAGELVMRGITAFGIAGRRLWQTWMQ  297 (343)
T ss_dssp             SCHHHHHHHHHSSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCEEECHHHHTGGGTCEEEECCSCCTTHHHHH
T ss_pred             cCHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCceeCcHHHHHhCceEEEEeecCCCHHHHHH
Confidence            3566778877766899999999997779999999999999999998665566777 6778899999998765  678999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|+++++++|+++|||+|+
T Consensus       298 ~~~l~~~g~~~~~~~i~~~~~l~~~  322 (343)
T 2dq4_A          298 GTALVYSGRVDLSPLLTHRLPLSRY  322 (343)
T ss_dssp             HHHHHHHTSSCCGGGEEEEEEGGGH
T ss_pred             HHHHHHcCCCChHHheeEEecHHHH
Confidence            9999999998889999999999985

>1e3j_A NADP(H)-dependent ketose reductase; oxidoreductase, fructose reduction; 2.3A {Bemisia argentifolii} SCOP: b.35.1.2 c.2.1.1

Probab=99.71  E-value=4.4e-17  Score=107.09  Aligned_cols=101  Identities=43%  Similarity=0.733  Sum_probs=87.2

Q ss_pred             HHHHHHHHHcC----CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHH
Q 040104            4 EEVEKIDKAMG----TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPL   79 (105)
Q Consensus         4 ~~~~~~~~~~~----~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~   79 (105)
                      ++.+++++.++    +++|++||++|.+..+..++++++++|+++.+|....+..++...+.++++++.|++.++.++++
T Consensus       224 ~~~~~i~~~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  303 (352)
T 1e3j_A          224 EEESSIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPI  303 (352)
T ss_dssp             SCHHHHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHH
T ss_pred             cHHHHHHHHhccccCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCccccHHHHHhcCcEEEEeccchHHHHH
Confidence            45566777664    68999999999987799999999999999999976555567777788999999998877788999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|+++++++|+++|||+++
T Consensus       304 ~~~l~~~g~i~~~~~i~~~~~l~~~  328 (352)
T 1e3j_A          304 ALEMVASGRCNVKQLVTHSFKLEQT  328 (352)
T ss_dssp             HHHHHHTTSCCCGGGEEEEEEGGGH
T ss_pred             HHHHHHcCCCChHHheeEEecHHHH
Confidence            9999999999888999999999985

>3ip1_A Alcohol dehydrogenase, zinc-containing; structural genomics, metal-binding, oxidoreductase, PSI-2, protein structure initiative; 2.09A {Thermotoga maritima}

Probab=99.70  E-value=6.3e-17  Score=108.11  Aligned_cols=101  Identities=15%  Similarity=0.269  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCCh-HHHHHHHHhh----hcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--C
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFN-KTMSTALSAT----RAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--K   74 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~-~~~~~~~~~l----~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~   74 (105)
                      +++.+++++.+ +.|+|++|||+|++ ..+..+++++    +++|+++.+|....+..++...+..+++++.|++..  .
T Consensus       268 ~~~~~~i~~~t~g~g~D~vid~~g~~~~~~~~~~~~l~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~  347 (404)
T 3ip1_A          268 ENFVEAVLDYTNGLGAKLFLEATGVPQLVWPQIEEVIWRARGINATVAIVARADAKIPLTGEVFQVRRAQIVGSQGHSGH  347 (404)
T ss_dssp             SCHHHHHHHHTTTCCCSEEEECSSCHHHHHHHHHHHHHHCSCCCCEEEECSCCCSCEEECHHHHHHTTCEEEECCCCCST
T ss_pred             CCHHHHHHHHhCCCCCCEEEECCCCcHHHHHHHHHHHHhccCCCcEEEEeCCCCCCCcccHHHHhccceEEEEecCCCch
Confidence            45778899999 45999999999998 3477888888    999999999987766778888889999999999865  6


Q ss_pred             CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+++++++++++| +++.++|+++|||+++
T Consensus       348 ~~~~~~~~ll~~g-l~~~~~i~~~~~l~~~  376 (404)
T 3ip1_A          348 GTFPRVISLMASG-MDMTKIISKTVSMEEI  376 (404)
T ss_dssp             THHHHHHHHHHTT-CCGGGGCCEEECGGGH
T ss_pred             HHHHHHHHHHHcC-CChhheEEEEeeHHHH
Confidence            7899999999999 9888899999999985

>4a2c_A Galactitol-1-phosphate 5-dehydrogenase; oxidoreductase, metal binding-site; 1.87A {Escherichia coli}

Probab=99.70  E-value=2.4e-17  Score=107.90  Aligned_cols=101  Identities=19%  Similarity=0.318  Sum_probs=84.7

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc---ccchhhhhcCeEEEEeecc------
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT---VPLTPAAAREVDVVGVFRY------   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~---~~~~~~~~~~~~i~~~~~~------   73 (105)
                      +..+.+++.+ ++++|+++|++|.+.+++.++++++++|+++.+|....+..   +++..++.+++++.|++..      
T Consensus       216 ~~~~~~~~~~~~~g~d~v~d~~G~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~k~~~i~G~~~~~~~~~~  295 (346)
T 4a2c_A          216 SAPQMQSVLRELRFNQLILETAGVPQTVELAVEIAGPHAQLALVGTLHQDLHLTSATFGKILRKELTVIGSWMNYSSPWP  295 (346)
T ss_dssp             CHHHHHHHHGGGCSSEEEEECSCSHHHHHHHHHHCCTTCEEEECCCCSSCEEECHHHHHHHHHHTCEEEECCTTCCSSTT
T ss_pred             CHHHHHHhhcccCCcccccccccccchhhhhhheecCCeEEEEEeccCCCccccccCHHHHhhceeEEEEEeccccCcch
Confidence            4456667777 57999999999999889999999999999999998765433   3445678899999998753      


Q ss_pred             CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .++++++++++++|+++++++|+++|||+|+
T Consensus       296 ~~~~~~~~~l~~~g~l~~~~lI~~~~~l~~~  326 (346)
T 4a2c_A          296 GQEWETASRLLTERKLSLEPLIAHRGSFESF  326 (346)
T ss_dssp             CHHHHHHHHHHHTTCSCCGGGEEEEECHHHH
T ss_pred             HHHHHHHHHHHHcCCCCCCccEeEEEeHHHH
Confidence            3578999999999999999999999999875

>2d8a_A PH0655, probable L-threonine 3-dehydrogenase; pyrococcus horikoshii OT3, structural genomics; HET: NAD; 2.05A {Pyrococcus horikoshii} PDB: 2dfv_A* 3gfb_A*

Probab=99.69  E-value=5.9e-17  Score=106.35  Aligned_cols=102  Identities=24%  Similarity=0.499  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc-hhhhhcCeEEEEeecc--CCCHH
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL-TPAAAREVDVVGVFRY--KNTWP   78 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~-~~~~~~~~~i~~~~~~--~~~~~   78 (105)
                      +++.+++++.++ .++|++||++|.+..+..++++++++|+++.+|....+..++. ..++.+++++.|++..  +++++
T Consensus       222 ~~~~~~v~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  301 (348)
T 2d8a_A          222 EDVVKEVMDITDGNGVDVFLEFSGAPKALEQGLQAVTPAGRVSLLGLYPGKVTIDFNNLIIFKALTIYGITGRHLWETWY  301 (348)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHTTTTTCEEEECCCCCSHHHHH
T ss_pred             cCHHHHHHHHcCCCCCCEEEECCCCHHHHHHHHHHHhcCCEEEEEccCCCCcccCchHHHHhCCcEEEEecCCCcHHHHH
Confidence            356678888884 5899999999997779999999999999999998665566776 6778899999998654  56799


Q ss_pred             HHHHHHHcCCCCCCCceeeeee-CCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFG-FSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~-l~~~  104 (105)
                      ++++++++|+++++++|+++|| |+|+
T Consensus       302 ~~~~l~~~g~i~~~~~i~~~~~gl~~~  328 (348)
T 2d8a_A          302 TVSRLLQSGKLNLDPIITHKYKGFDKY  328 (348)
T ss_dssp             HHHHHHHHTCCCCTTTEEEEEESSTTH
T ss_pred             HHHHHHHcCCCChHHhheeeCCCHHHH
Confidence            9999999999988999999999 9985

>3fpc_A NADP-dependent alcohol dehydrogenase; oxydoreductase, bacterial alcohol dehydrogenase, domain exchange, chimera, metal-binding; 1.40A {Thermoanaerobacter brockii} PDB: 2nvb_A* 1ykf_A* 1bxz_A* 3ftn_A 3fsr_A 1y9a_A* 2oui_A* 3fpl_A* 1jqb_A 1kev_A* 1ped_A 2b83_A

Probab=99.68  E-value=3.7e-17  Score=107.42  Aligned_cols=102  Identities=21%  Similarity=0.251  Sum_probs=84.6

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchh----hhhcCeEEEEeecc--CC
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTP----AAAREVDVVGVFRY--KN   75 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~----~~~~~~~i~~~~~~--~~   75 (105)
                      +++.+++++.+ +.|+|++||++|++..+..++++++++|+++.+|.......+++..    ..++++++.+++..  +.
T Consensus       221 ~~~~~~v~~~t~g~g~D~v~d~~g~~~~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  300 (352)
T 3fpc_A          221 GDIVEQILKATDGKGVDKVVIAGGDVHTFAQAVKMIKPGSDIGNVNYLGEGDNIDIPRSEWGVGMGHKHIHGGLCPGGRL  300 (352)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSCSEEEEETTTTGGGTBCEEEEEBCCCCHHH
T ss_pred             cCHHHHHHHHcCCCCCCEEEECCCChHHHHHHHHHHhcCCEEEEecccCCCCceecchhHhhhhccccEEEEeeccCchh
Confidence            45778889999 4589999999999777999999999999999999765443343332    23588999998764  56


Q ss_pred             CHHHHHHHHHcCCCCCCCceeeeee-CCCC
Q 040104           76 TWPLCLEFLRSGKIDIKPLVTHRFG-FSQK  104 (105)
Q Consensus        76 ~~~~~~~~v~~g~i~~~~~i~~~~~-l~~~  104 (105)
                      +++++++++++|+++++++|+++|| |+|+
T Consensus       301 ~~~~~~~l~~~g~i~~~~~i~~~~~gl~~~  330 (352)
T 3fpc_A          301 RMERLIDLVFYKRVDPSKLVTHVFRGFDNI  330 (352)
T ss_dssp             HHHHHHHHHHTTSCCGGGGEEEEEESTTHH
T ss_pred             HHHHHHHHHHcCCCChhHhheeeCCCHHHH
Confidence            7999999999999998889999999 9975

>1e3i_A Alcohol dehydrogenase, class II; HET: NAD; 2.08A {Mus musculus} SCOP: b.35.1.2 c.2.1.1 PDB: 1e3e_A* 1e3l_A* 3cos_A*

Probab=99.67  E-value=8.7e-17  Score=106.49  Aligned_cols=100  Identities=29%  Similarity=0.438  Sum_probs=84.5

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhhhhcCeEEEEeecc----CCCHH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      ++.+++++.+++++|++||++|++..+..++++++++ |+++.+|.+..+..++...+..++ ++.|++..    .++++
T Consensus       253 ~~~~~v~~~~~~g~Dvvid~~G~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~~  331 (376)
T 1e3i_A          253 PVQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVILGR-SINGTFFGGWKSVDSVP  331 (376)
T ss_dssp             CHHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHHTTC-EEEECSGGGCCHHHHHH
T ss_pred             hHHHHHHHHhCCCccEEEECCCCHHHHHHHHHHhhcCCCEEEEECCCCCccccCHHHhhccC-eEEEEecCCCCcHHHHH
Confidence            4677888888669999999999977799999999999 999999985444556666677788 99998653    45789


Q ss_pred             HHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           79 LCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        79 ~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++|+++++++|+++|||+|+
T Consensus       332 ~~~~l~~~g~i~~~~~i~~~~~l~~~  357 (376)
T 1e3i_A          332 NLVSDYKNKKFDLDLLVTHALPFESI  357 (376)
T ss_dssp             HHHHHHHTTSSCGGGGEEEEEEGGGH
T ss_pred             HHHHHHHcCCCCcHHhEeeeecHHHH
Confidence            99999999999888899999999985

>3uko_A Alcohol dehydrogenase class-3; alcohol dehydrogenase III, homodimer, reduction of GSNO, NAD binding, oxidoreductase; HET: NAD SO4; 1.40A {Arabidopsis thaliana}

Probab=99.67  E-value=1.7e-16  Score=105.18  Aligned_cols=101  Identities=21%  Similarity=0.267  Sum_probs=83.7

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCc--cccchhhhhcCeEEEEeecc----CC
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEM--TVPLTPAAAREVDVVGVFRY----KN   75 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~--~~~~~~~~~~~~~i~~~~~~----~~   75 (105)
                      +++.+.+++.+++++|++|||+|++..+..++++++++ |+++.+|......  .++...+. +++++.|++..    +.
T Consensus       250 ~~~~~~i~~~~~gg~D~vid~~g~~~~~~~~~~~l~~g~G~iv~~G~~~~~~~~~~~~~~~~-~~~~i~g~~~~~~~~~~  328 (378)
T 3uko_A          250 KPIQEVIVDLTDGGVDYSFECIGNVSVMRAALECCHKGWGTSVIVGVAASGQEISTRPFQLV-TGRVWKGTAFGGFKSRT  328 (378)
T ss_dssp             SCHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHH-TTCEEEECSGGGCCHHH
T ss_pred             hhHHHHHHHhcCCCCCEEEECCCCHHHHHHHHHHhhccCCEEEEEcccCCCCccccCHHHHh-cCcEEEEEEecCCCchH
Confidence            45778899999669999999999987799999999996 9999999765333  34444444 48999998754    46


Q ss_pred             CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           76 TWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        76 ~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++++|+++++++|+++|||+++
T Consensus       329 ~~~~~~~l~~~g~l~~~~~i~~~~~l~~~  357 (378)
T 3uko_A          329 QVPWLVEKYMNKEIKVDEYITHNLTLGEI  357 (378)
T ss_dssp             HHHHHHHHHHTTSSCCGGGEEEEEEGGGH
T ss_pred             HHHHHHHHHHcCCCChhHheeeEeeHHHH
Confidence            79999999999999988999999999985

>1p0f_A NADP-dependent alcohol dehydrogenase; ADH topology, NADP(H)-dependent, oxidoreductase; HET: NAP; 1.80A {Rana perezi} SCOP: b.35.1.2 c.2.1.1 PDB: 1p0c_A*

Probab=99.67  E-value=3e-16  Score=103.82  Aligned_cols=100  Identities=21%  Similarity=0.270  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC--CccccchhhhhcCeEEEEeecc---CCCH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY---KNTW   77 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~---~~~~   77 (105)
                      ++.+.+++.+++++|++|||+|.+..+..++++++++ |+++.+|....  ...++...+..++ ++.|++..   .+++
T Consensus       249 ~~~~~i~~~t~gg~Dvvid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~  327 (373)
T 1p0f_A          249 PIYEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGR-SLKGSVFGGFKGEEV  327 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTC-EEEECSGGGCCGGGH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHHhcCCCEEEEEccCCCCCccccCHHHhccCc-eEEeeccCCcCHHHH
Confidence            4778888888669999999999977799999999999 99999997653  3445555666777 99998653   3689


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++|+++++++|+++|||+|+
T Consensus       328 ~~~~~l~~~g~i~~~~~i~~~~~l~~~  354 (373)
T 1p0f_A          328 SRLVDDYMKKKINVNFLVSTKLTLDQI  354 (373)
T ss_dssp             HHHHHHHHTTSSCGGGGEEEEECGGGH
T ss_pred             HHHHHHHHcCCCCchheEEEEeeHHHH
Confidence            999999999999888899999999985

>4eez_A Alcohol dehydrogenase 1; site-saturation mutagenesis, directed evolution, isobutyraldehyde, biofuel, oxidoreductase; HET: PG4; 1.90A {Lactococcus lactis subsp} PDB: 4eex_A*

Probab=99.66  E-value=9.6e-17  Score=105.14  Aligned_cols=99  Identities=23%  Similarity=0.367  Sum_probs=87.8

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +++.+++++.+ +.|+|.++|++|++.++..++.+++++|+++.+|.+.....++...++++++++.|++.+ +.+++++
T Consensus       218 ~~~~~~v~~~t~g~g~d~~~~~~~~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~  297 (348)
T 4eez_A          218 VNPVDEIKKITGGLGVQSAIVCAVARIAFEQAVASLKPMGKMVAVAVPNTEMTLSVPTVVFDGVEVAGSLVGTRLDLAEA  297 (348)
T ss_dssp             CCHHHHHHHHTTSSCEEEEEECCSCHHHHHHHHHTEEEEEEEEECCCCSCEEEECHHHHHHSCCEEEECCSCCHHHHHHH
T ss_pred             CCHHHHhhhhcCCCCceEEEEeccCcchhheeheeecCCceEEEEeccCCCCccCHHHHHhCCeEEEEEecCCHHHHHHH
Confidence            46778899999 569999999999999899999999999999999987777778888889999999999887 7889999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++  ++++ ++|||+|+
T Consensus       298 ~~l~~~g~i--~p~~-~~~~l~~~  318 (348)
T 4eez_A          298 FQFGAEGKV--KPIV-ATRKLEEI  318 (348)
T ss_dssp             HHHHHTTSC--CCCE-EEECGGGH
T ss_pred             HHHHHcCCC--EEEE-EEEeHHHH
Confidence            999999999  4555 68999985

>1vj0_A Alcohol dehydrogenase, zinc-containing; TM0436, structural G JCSG, PSI, protein structure initiative, joint center for S genomics; 2.00A {Thermotoga maritima} SCOP: b.35.1.2 c.2.1.1

Probab=99.65  E-value=6e-17  Score=107.48  Aligned_cols=101  Identities=14%  Similarity=0.261  Sum_probs=86.9

Q ss_pred             hhHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-C-Cccccchh-hhhcCeEEEEeecc-CCC
Q 040104            2 IAEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-H-EMTVPLTP-AAAREVDVVGVFRY-KNT   76 (105)
Q Consensus         2 ~~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~-~~~~~~~~-~~~~~~~i~~~~~~-~~~   76 (105)
                      .+++.+++++.++ .++|++||++|++..+..++++++++|+++.+|... . +..+++.. ++.+++++.|++.. +.+
T Consensus       252 ~~~~~~~v~~~~~g~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  331 (380)
T 1vj0_A          252 VEERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSH  331 (380)
T ss_dssp             HHHHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHH
T ss_pred             cchHHHHHHHHhCCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEEecCCCCCCeeEchHHHHHhCCeEEEEeecCCHHH
Confidence            3567788888884 589999999998766999999999999999999765 4 55677767 78899999998876 678


Q ss_pred             HHHHHHHHHc--CCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRS--GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~--g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++  |++  +++++++|||+|+
T Consensus       332 ~~~~~~l~~~~~g~l--~~~i~~~~~l~~~  359 (380)
T 1vj0_A          332 FVKTVSITSRNYQLL--SKLITHRLPLKEA  359 (380)
T ss_dssp             HHHHHHHHHTCHHHH--GGGCCEEEEGGGH
T ss_pred             HHHHHHHHHhhcCCe--eeEEEEEEeHHHH
Confidence            9999999999  998  7889999999985

>1f8f_A Benzyl alcohol dehydrogenase; rossmann fold, oxidoreductase; HET: NAD; 2.20A {Acinetobacter calcoaceticus} SCOP: b.35.1.2 c.2.1.1

Probab=99.65  E-value=1.7e-16  Score=104.95  Aligned_cols=101  Identities=18%  Similarity=0.326  Sum_probs=85.1

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCC
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +++.+++++.+++++|++||++|.+..+..++++++++|+++.+|....  +..++...+..+++++.|++..    +++
T Consensus       245 ~~~~~~~~~~~~gg~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  324 (371)
T 1f8f_A          245 QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKF  324 (371)
T ss_dssp             SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHH
T ss_pred             cCHHHHHHHhcCCCCcEEEECCCCHHHHHHHHHHHhcCCEEEEeCCCCCCCccccCHHHHHhCCCEEEEeCCCCCchHHH
Confidence            3566788888855999999999997779999999999999999997642  3456766778899999998754    357


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|++++.++|++ |||+|+
T Consensus       325 ~~~~~~l~~~g~l~~~~~i~~-~~l~~~  351 (371)
T 1f8f_A          325 IPELVRLYQQGKFPFDQLVKF-YAFDEI  351 (371)
T ss_dssp             HHHHHHHHHTTSCCGGGGEEE-EEGGGH
T ss_pred             HHHHHHHHHcCCCCcccceeE-ecHHHH
Confidence            899999999999988888998 999985

>3uog_A Alcohol dehydrogenase; structural genomics, protein structure initiative, PSI-biolo YORK structural genomics research consortium; 2.20A {Sinorhizobium meliloti 1021}

Probab=99.65  E-value=1.4e-16  Score=105.10  Aligned_cols=99  Identities=20%  Similarity=0.333  Sum_probs=86.2

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHH
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPL   79 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~   79 (105)
                      +++.+++++.++ .++|++|||+|... +..++++++++|+++.+|.... ...++...+..+++++.|+..+ +.++++
T Consensus       243 ~~~~~~v~~~~~g~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  321 (363)
T 3uog_A          243 EDWVERVYALTGDRGADHILEIAGGAG-LGQSLKAVAPDGRISVIGVLEGFEVSGPVGPLLLKSPVVQGISVGHRRALED  321 (363)
T ss_dssp             SCHHHHHHHHHTTCCEEEEEEETTSSC-HHHHHHHEEEEEEEEEECCCSSCEECCBTTHHHHTCCEEEECCCCCHHHHHH
T ss_pred             ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhhcCCEEEEEecCCCcccCcCHHHHHhCCcEEEEEecCCHHHHHH
Confidence            457788888884 59999999999765 9999999999999999997654 3567777888999999999877 788999


Q ss_pred             HHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           80 CLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        80 ~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++|++  +++++++|||+++
T Consensus       322 ~~~l~~~g~l--~~~i~~~~~l~~~  344 (363)
T 3uog_A          322 LVGAVDRLGL--KPVIDMRYKFTEV  344 (363)
T ss_dssp             HHHHHHHHTC--CCCEEEEEEGGGH
T ss_pred             HHHHHHcCCC--ccceeeEEcHHHH
Confidence            9999999988  7789999999985

>2jhf_A Alcohol dehydrogenase E chain; oxidoreductase, metal coordination, NAD, zinc, inhibition, acetylation, metal-binding; HET: NAD; 1.0A {Equus caballus} SCOP: b.35.1.2 c.2.1.1 PDB: 1adc_A* 1adf_A* 1adg_A* 1adb_A* 1bto_A* 1heu_A* 1hf3_A* 1hld_A* 1lde_A* 1ldy_A* 1mg0_A* 1n92_A* 1p1r_A* 1ye3_A 1het_A* 2jhg_A* 2ohx_A* 2oxi_A* 3bto_A* 4dwv_A* ...

Probab=99.65  E-value=5.2e-16  Score=102.70  Aligned_cols=100  Identities=24%  Similarity=0.322  Sum_probs=83.8

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      ++.+.+++.+++++|++||++|.+..+..++++++++ |+++.+|....  ...++...++.++ ++.|++..    .++
T Consensus       249 ~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~  327 (374)
T 2jhf_A          249 PIQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGR-TWKGAIFGGFKSKDS  327 (374)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHH
T ss_pred             hHHHHHHHHhCCCCcEEEECCCCHHHHHHHHHHhhcCCcEEEEeccCCCCCccccCHHHHhcCC-eEEEeccCCCChHHH
Confidence            4677888888669999999999977799999999999 99999997653  3456666667788 99998653    457


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|+++++++|+++|||+|+
T Consensus       328 ~~~~~~l~~~g~i~~~~~i~~~~~l~~~  355 (374)
T 2jhf_A          328 VPKLVADFMAKKFALDPLITHVLPFEKI  355 (374)
T ss_dssp             HHHHHHHHHTTSSCCGGGEEEEEEGGGH
T ss_pred             HHHHHHHHHcCCCCchhheEEEEeHHHH
Confidence            9999999999999888899999999985

>1cdo_A Alcohol dehydrogenase; oxidoreductase, oxidoreductase (CH-OH(D)-NAD(A)); HET: NAD; 2.05A {Gadus callarias} SCOP: b.35.1.2 c.2.1.1

Probab=99.64  E-value=4.3e-16  Score=103.09  Aligned_cols=100  Identities=22%  Similarity=0.311  Sum_probs=83.9

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC-CccccchhhhhcCeEEEEeecc----CCCH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY----KNTW   77 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~----~~~~   77 (105)
                      ++.+.+++.+++++|++||++|.+..+..++++++++ |+++.+|.... +..++...+..++ ++.|++..    ++++
T Consensus       250 ~~~~~~~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~~  328 (374)
T 1cdo_A          250 PISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR-TWKGSMFGGFKGKDGV  328 (374)
T ss_dssp             CHHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTC-EEEECSGGGCCHHHHH
T ss_pred             hHHHHHHHHhCCCCCEEEECCCCHHHHHHHHHHhhcCCcEEEEEcCCCCCCcccCHHHHhcCC-eEEEEecCCCCcHHHH
Confidence            4677888888669999999999977799999999999 99999997653 4455656667777 99998653    4579


Q ss_pred             HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++++++|+++++++|+++|||+|+
T Consensus       329 ~~~~~l~~~g~l~~~~~i~~~~~l~~~  355 (374)
T 1cdo_A          329 PKMVKAYLDKKVKLDEFITHRMPLESV  355 (374)
T ss_dssp             HHHHHHHHTTSSCCGGGEEEEEEGGGH
T ss_pred             HHHHHHHHcCCCChHHheeeEecHHHH
Confidence            999999999999888899999999985

>2fzw_A Alcohol dehydrogenase class III CHI chain; S-nitrosoglutathione reductase, glutathione-dependent formaldehyde dehydrogenase, oxidoreductase; HET: NAD; 1.84A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1 PDB: 3qj5_A* 1mc5_A* 2fze_A* 1m6w_A* 1ma0_A* 1mp0_A* 1teh_A* 1m6h_A*

Probab=99.64  E-value=4.9e-16  Score=102.73  Aligned_cols=100  Identities=26%  Similarity=0.332  Sum_probs=83.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      ++.+.+++.+++++|++||++|++..+..++++++++ |+++.+|....  ...++...+..++ ++.|+...    +.+
T Consensus       248 ~~~~~v~~~~~~g~D~vid~~g~~~~~~~~~~~l~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~-~i~g~~~~~~~~~~~  326 (373)
T 2fzw_A          248 PIQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGR-TWKGTAFGGWKSVES  326 (373)
T ss_dssp             CHHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTC-EEEECSGGGCCHHHH
T ss_pred             cHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHhhccCCcEEEEEecCCCCceeeeCHHHHhcCC-EEEEeccCCCCcHHH
Confidence            4677888888669999999999977799999999999 99999997653  3455656667777 99988653    457


Q ss_pred             HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 ~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++++++|+++++++|+++|||+++
T Consensus       327 ~~~~~~l~~~g~l~~~~~i~~~~~l~~~  354 (373)
T 2fzw_A          327 VPKLVSEYMSKKIKVDEFVTHNLSFDEI  354 (373)
T ss_dssp             HHHHHHHHHTTSSCSGGGEEEEEEGGGH
T ss_pred             HHHHHHHHHcCCCCchheEeEEeeHHHH
Confidence            9999999999999888899999999985

>3jv7_A ADH-A; dehydrogenase, nucleotide binding, rossmann-fold, oxidoreduc; HET: NAD; 2.00A {Rhodococcus ruber} PDB: 2xaa_A*

Probab=99.63  E-value=3.3e-16  Score=102.65  Aligned_cols=97  Identities=22%  Similarity=0.335  Sum_probs=83.3

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+++++.++ .++|++|||+|++..++.++++++++|+++.+|.... ...+++ .++.+++++.+++.+ .++++++
T Consensus       226 ~~~~~v~~~t~g~g~d~v~d~~G~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~-~~~~~~~~i~g~~~~~~~~~~~~  304 (345)
T 3jv7_A          226 GAADAIRELTGGQGATAVFDFVGAQSTIDTAQQVVAVDGHISVVGIHAGAHAKVGF-FMIPFGASVVTPYWGTRSELMEV  304 (345)
T ss_dssp             THHHHHHHHHGGGCEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCTTCCEEEST-TTSCTTCEEECCCSCCHHHHHHH
T ss_pred             cHHHHHHHHhCCCCCeEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCCCCcCH-HHHhCCCEEEEEecCCHHHHHHH
Confidence            56788888884 5999999999998779999999999999999998665 556664 677899999999877 7889999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++++   ++++|||+++
T Consensus       305 ~~l~~~g~l~~---~~~~~~l~~~  325 (345)
T 3jv7_A          305 VALARAGRLDI---HTETFTLDEG  325 (345)
T ss_dssp             HHHHHTTCCCC---CEEEECSTTH
T ss_pred             HHHHHcCCCce---EEEEEcHHHH
Confidence            99999999954   4579999985

>2h6e_A ADH-4, D-arabinose 1-dehydrogenase; rossman fold, medium chain alcohol dehydrogenase, oxidoreduc; 1.80A {Sulfolobus solfataricus}

Probab=99.61  E-value=1.8e-15  Score=99.12  Aligned_cols=94  Identities=22%  Similarity=0.293  Sum_probs=76.7

Q ss_pred             HHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104            9 IDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus         9 ~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      +.+.+ +.++|++||++|.+..+..++++++++|+++.+|.+..+..++...++.+++++.|++.+ +++++++++++++
T Consensus       230 ~~~~~~g~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~  309 (344)
T 2h6e_A          230 INKLTDGLGASIAIDLVGTEETTYNLGKLLAQEGAIILVGMEGKRVSLEAFDTAVWNKKLLGSNYGSLNDLEDVVRLSES  309 (344)
T ss_dssp             HHHHHTTCCEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSCCCCCHHHHHHTTCEEEECCSCCHHHHHHHHHHHHT
T ss_pred             HHHhhcCCCccEEEECCCChHHHHHHHHHhhcCCEEEEeCCCCCCcccCHHHHhhCCcEEEEEecCCHHHHHHHHHHHHc
Confidence            34455 458999999999986699999999999999999987655567777778899999998776 6789999999999


Q ss_pred             CCCCCCCceeeeeeCCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQKE  105 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~~  105 (105)
                      |++  ++.+ ++|||+|++
T Consensus       310 g~i--~~~i-~~~~l~~~~  325 (344)
T 2h6e_A          310 GKI--KPYI-IKVPLDDIN  325 (344)
T ss_dssp             TSS--CCCE-EEECC----
T ss_pred             CCC--Ccce-EEEeHHHHH
Confidence            999  5567 899999864

>2b5w_A Glucose dehydrogenase; nucleotide binding motif, oxidoreductase; HET: FLC NAP; 1.60A {Haloferax mediterranei} PDB: 2b5v_A* 2vwg_A* 2vwh_A* 2vwp_A* 2vwq_A*

Probab=99.61  E-value=1.6e-16  Score=104.64  Aligned_cols=95  Identities=17%  Similarity=0.198  Sum_probs=80.8

Q ss_pred             HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhh----hhcCeEEEEeecc-CCCHHHHHH
Q 040104            9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPA----AAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~----~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      +++. ++++|++||++|++..+..++++++++|+++.+|... .+..++...+    +.+++++.|++.+ +++++++++
T Consensus       236 i~~~-~gg~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  314 (357)
T 2b5w_A          236 VPDV-YEQMDFIYEATGFPKHAIQSVQALAPNGVGALLGVPSDWAFEVDAGAFHREMVLHNKALVGSVNSHVEHFEAATV  314 (357)
T ss_dssp             HHHH-SCCEEEEEECSCCHHHHHHHHHHEEEEEEEEECCCCCCCCCCCCHHHHHHHHHHTTCEEEECCCCCHHHHHHHHH
T ss_pred             HHHh-CCCCCEEEECCCChHHHHHHHHHHhcCCEEEEEeCCCCCCceecHHHHhHHHHhCCeEEEEeccCCHHHHHHHHH
Confidence            5555 4589999999999866999999999999999999866 4556676667    7899999998776 678999999


Q ss_pred             HHHcC--CCCCCCceeeeeeCCCCC
Q 040104           83 FLRSG--KIDIKPLVTHRFGFSQKE  105 (105)
Q Consensus        83 ~v~~g--~i~~~~~i~~~~~l~~~~  105 (105)
                      ++++|  ++ ++++++++|||++++
T Consensus       315 l~~~g~~~~-~~~~i~~~~~l~~~~  338 (357)
T 2b5w_A          315 TFTKLPKWF-LEDLVTGVHPLSEFE  338 (357)
T ss_dssp             HHHHSCHHH-HHHHEEEEEEGGGGG
T ss_pred             HHHhCchhh-hhhhcceeecHHHHH
Confidence            99999  85 488899999999863

>2dph_A Formaldehyde dismutase; dismutation of aldehydes, oxidoreductase; HET: NAD; 2.27A {Pseudomonas putida}

Probab=99.60  E-value=3.8e-16  Score=104.17  Aligned_cols=99  Identities=16%  Similarity=0.274  Sum_probs=82.0

Q ss_pred             HHHHHHHcC-CCCcEEEEccCChH--------------HHHHHHHhhhcCCEEEEEcCCC-------------CCccccc
Q 040104            6 VEKIDKAMG-TGIDVSFDCAGFNK--------------TMSTALSATRAGGKVCLVGMGH-------------HEMTVPL   57 (105)
Q Consensus         6 ~~~~~~~~~-~g~d~vid~~g~~~--------------~~~~~~~~l~~~G~~v~~g~~~-------------~~~~~~~   57 (105)
                      .+++++.++ .++|++||++|+..              ++..++++++++|+++.+|...             .+..+++
T Consensus       243 ~~~~~~~~~g~g~Dvvid~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~gG~iv~~G~~~~~~~~~~~~~~~~~~~~~~~  322 (398)
T 2dph_A          243 RDQIDQILGKPEVDCGVDAVGFEAHGLGDEANTETPNGALNSLFDVVRAGGAIGIPGIYVGSDPDPVNKDAGSGRLHLDF  322 (398)
T ss_dssp             HHHHHHHHSSSCEEEEEECSCTTCBCSGGGTTSBCTTHHHHHHHHHEEEEEEEECCSCCCSCCSSCSSHHHHTTEEEEEH
T ss_pred             HHHHHHHhCCCCCCEEEECCCCccccccccccccccHHHHHHHHHHHhcCCEEEEeccccccccccccccccCCcccccH
Confidence            677888885 48999999999762              5899999999999999999752             2234555


Q ss_pred             hhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCC--CCCceeeeeeCCCC
Q 040104           58 TPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKID--IKPLVTHRFGFSQK  104 (105)
Q Consensus        58 ~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~--~~~~i~~~~~l~~~  104 (105)
                      ..++.+++++.++... ...++++++++++|+++  +.++|+++|||+++
T Consensus       323 ~~~~~k~~~i~g~~~~~~~~~~~~~~l~~~g~l~~~~~~~i~~~~~l~~~  372 (398)
T 2dph_A          323 GKMWTKSIRIMTGMAPVTNYNRHLTEAILWDQMPYLSKVMNIEVITLDQA  372 (398)
T ss_dssp             HHHHHTTCEEECSSCCGGGTHHHHHHHHHTTCCHHHHHHHCEEEECSTTH
T ss_pred             HHHhhcCCEEEEeccCcHHHHHHHHHHHHcCCCCccchhhEEEEEcHHHH
Confidence            5678899999987766 77899999999999997  66689999999985

>4a0s_A Octenoyl-COA reductase/carboxylase; oxidoreductase, transferase, cinnabaramide PKS biosynthesis; HET: CO8 NAP; 1.90A {Streptomyces SP} PDB: 4a10_A

Probab=99.60  E-value=2.2e-15  Score=101.77  Aligned_cols=97  Identities=15%  Similarity=0.206  Sum_probs=83.0

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      +.+.+++.+++++|++||++|++. +..++.+++++|+++.+|...+ ...++...++.+++++.|++.+ ..++.++++
T Consensus       295 ~~~~v~~~~g~g~Dvvid~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  373 (447)
T 4a0s_A          295 LAKLVVEKAGREPDIVFEHTGRVT-FGLSVIVARRGGTVVTCGSSSGYLHTFDNRYLWMKLKKIVGSHGANHEEQQATNR  373 (447)
T ss_dssp             HHHHHHHHHSSCCSEEEECSCHHH-HHHHHHHSCTTCEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             HHHHHHHHhCCCceEEEECCCchH-HHHHHHHHhcCCEEEEEecCCCcccccCHHHHHhCCCEEEecCCCCHHHHHHHHH
Confidence            367788888779999999999965 9999999999999999997654 3456666778899999998877 567889999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|++  +++++++|||+|+
T Consensus       374 l~~~g~l--~~~i~~~~~l~~~  393 (447)
T 4a0s_A          374 LFESGAV--VPAMSAVYPLAEA  393 (447)
T ss_dssp             HHHTTSS--CCCEEEEEEGGGH
T ss_pred             HHHcCCc--ccceeEEEcHHHH
Confidence            9999999  6789999999985

>3krt_A Crotonyl COA reductase; structural genomics, protein structure initiative, NYSGXRC, PSI-2; 2.19A {Streptomyces coelicolor} PDB: 3hzz_A

Probab=99.60  E-value=1.1e-15  Score=103.50  Aligned_cols=98  Identities=15%  Similarity=0.198  Sum_probs=83.1

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+.+++.++ .++|++|||+|+. .+..++.+++++|+++.+|...+ ...++...+.++++++.|++.. ..++.++
T Consensus       301 ~~~~~i~~~t~g~g~Dvvid~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  379 (456)
T 3krt_A          301 RFGKRIRELTGGEDIDIVFEHPGRE-TFGASVFVTRKGGTITTCASTSGYMHEYDNRYLWMSLKRIIGSHFANYREAWEA  379 (456)
T ss_dssp             HHHHHHHHHHTSCCEEEEEECSCHH-HHHHHHHHEEEEEEEEESCCTTCSEEEEEHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             HHHHHHHHHhCCCCCcEEEEcCCch-hHHHHHHHhhCCcEEEEEecCCCcccccCHHHHHhcCeEEEEeccCCHHHHHHH
Confidence            34588888884 6999999999995 59999999999999999997654 3456667788899999999877 5677889


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++  +++|+++|||+++
T Consensus       380 ~~l~~~g~l--~~~i~~~~~l~~~  401 (456)
T 3krt_A          380 NRLIAKGRI--HPTLSKVYSLEDT  401 (456)
T ss_dssp             HHHHHTTSS--CCCEEEEEEGGGH
T ss_pred             HHHHHcCCc--ccceeEEEcHHHH
Confidence            999999999  6789999999985

>1jvb_A NAD(H)-dependent alcohol dehydrogenase; archaeon, zinc, oxidoreductase; HET: MSE; 1.85A {Sulfolobus solfataricus} SCOP: b.35.1.2 c.2.1.1 PDB: 1r37_A* 1nto_A 1nvg_A 3i4c_A 2eer_A*

Probab=99.59  E-value=6.1e-16  Score=101.49  Aligned_cols=98  Identities=20%  Similarity=0.313  Sum_probs=83.6

Q ss_pred             HHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +..+++.+.++ +++|++||++|++..+..++++++++|+++.+|.+. .+ .+++..++.+++++.|++.+ +++++++
T Consensus       227 ~~~~~~~~~~~~~~~d~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~  305 (347)
T 1jvb_A          227 DPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADL-HYHAPLITLSEIQFVGSLVGNQSDFLGI  305 (347)
T ss_dssp             CHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCC-CCCHHHHHHHTCEEEECCSCCHHHHHHH
T ss_pred             cHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHHHhcCCEEEEECCCCCCC-CCCHHHHHhCceEEEEEeccCHHHHHHH
Confidence            34566777775 589999999999866999999999999999999865 44 67777778899999998776 6789999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++  +++|+++|||+++
T Consensus       306 ~~l~~~g~l--~~~i~~~~~l~~~  327 (347)
T 1jvb_A          306 MRLAEAGKV--KPMITKTMKLEEA  327 (347)
T ss_dssp             HHHHHTTSS--CCCCEEEEEGGGH
T ss_pred             HHHHHcCCC--CceEEEEEcHHHH
Confidence            999999998  6789999999985

>4dup_A Quinone oxidoreductase; PSI-biology, structural genomics, protein structure initiati structural genomics research consortium, nysgrc; 2.45A {Rhizobium etli}

Probab=99.58  E-value=2.8e-15  Score=98.60  Aligned_cols=99  Identities=17%  Similarity=0.349  Sum_probs=83.0

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-cc-ccchhhhhcCeEEEEeecc-CCC---
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MT-VPLTPAAAREVDVVGVFRY-KNT---   76 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~-~~~~~~~~~~~~i~~~~~~-~~~---   76 (105)
                      +++.+.+++.+++++|++|||+|++. +..++++++++|+++.+|..... .. +++..++.+++++.|+... ...   
T Consensus       222 ~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  300 (353)
T 4dup_A          222 EDFAAVIKAETGQGVDIILDMIGAAY-FERNIASLAKDGCLSIIAFLGGAVAEKVNLSPIMVKRLTVTGSTMRPRTAEEK  300 (353)
T ss_dssp             SCHHHHHHHHHSSCEEEEEESCCGGG-HHHHHHTEEEEEEEEECCCTTCSEEEEEECHHHHHTTCEEEECCSTTSCHHHH
T ss_pred             hHHHHHHHHHhCCCceEEEECCCHHH-HHHHHHHhccCCEEEEEEecCCCcccCCCHHHHHhcCceEEEEeccccchhhh
Confidence            35667788878779999999999976 99999999999999999976543 33 7777888999999999876 333   


Q ss_pred             -------HHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           77 -------WPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 -------~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                             ++++++++++|++  +++++++|||+++
T Consensus       301 ~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~  333 (353)
T 4dup_A          301 RAIRDDLLSEVWPLLEAGTV--APVIHKVFAFEDV  333 (353)
T ss_dssp             HHHHHHHHHHTHHHHHHTSS--CCCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHHCCCc--cCCcceEEeHHHH
Confidence                   7889999999998  6789999999985

>2eih_A Alcohol dehydrogenase; zinc ION binding protein, structural genomics, NPPSFA, natio project on protein structural and functional analyses; 2.30A {Thermus thermophilus}

Probab=99.58  E-value=4.5e-15  Score=97.21  Aligned_cols=98  Identities=22%  Similarity=0.378  Sum_probs=82.3

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      ++.+++++.+ +.++|++||++|. ..+..++++++++|+++.+|..... ..+++..++.+++++.|+... .++++++
T Consensus       222 ~~~~~~~~~~~~~~~d~vi~~~g~-~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  300 (343)
T 2eih_A          222 DWPKEVRRLTGGKGADKVVDHTGA-LYFEGVIKATANGGRIAIAGASSGYEGTLPFAHVFYRQLSILGSTMASKSRLFPI  300 (343)
T ss_dssp             THHHHHHHHTTTTCEEEEEESSCS-SSHHHHHHHEEEEEEEEESSCCCSCCCCCCTTHHHHTTCEEEECCSCCGGGHHHH
T ss_pred             cHHHHHHHHhCCCCceEEEECCCH-HHHHHHHHhhccCCEEEEEecCCCCcCccCHHHHHhCCcEEEEecCccHHHHHHH
Confidence            4567778777 4589999999995 4599999999999999999976543 346677778899999998765 7789999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++  +++++++|||+++
T Consensus       301 ~~l~~~g~l--~~~i~~~~~l~~~  322 (343)
T 2eih_A          301 LRFVEEGKL--KPVVGQVLPLEAA  322 (343)
T ss_dssp             HHHHHHTSS--CCCEEEEEEGGGH
T ss_pred             HHHHHcCCC--CCceeEEeeHHHH
Confidence            999999998  6788999999985

>3gaz_A Alcohol dehydrogenase superfamily protein; oxidoreductase, PSI-II, alcohol dehydrogenase superf structural genomics; 1.96A {Novosphingobium aromaticivorans}

Probab=99.56  E-value=6.4e-15  Score=96.57  Aligned_cols=96  Identities=21%  Similarity=0.300  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--------
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--------   73 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--------   73 (105)
                      +++.+.+++.+ +.++|++|||+|++. +..++++++++|+++.+|...   .++...+..+++++.+++..        
T Consensus       202 ~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~g~~~---~~~~~~~~~~~~~~~g~~~~~~~~~~~~  277 (343)
T 3gaz_A          202 REPEDYAAEHTAGQGFDLVYDTLGGPV-LDASFSAVKRFGHVVSCLGWG---THKLAPLSFKQATYSGVFTLHTLLANEG  277 (343)
T ss_dssp             SCHHHHHHHHHTTSCEEEEEESSCTHH-HHHHHHHEEEEEEEEESCCCS---CCCCHHHHHTTCEEEECCTTHHHHHTCS
T ss_pred             CCHHHHHHHHhcCCCceEEEECCCcHH-HHHHHHHHhcCCeEEEEcccC---ccccchhhhcCcEEEEEEeccchhcccc
Confidence            45667788888 469999999999865 999999999999999998654   35666778899999997653        


Q ss_pred             ----CCCHHHHHHHHHcCCCCCCCcee-eeeeCCCC
Q 040104           74 ----KNTWPLCLEFLRSGKIDIKPLVT-HRFGFSQK  104 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g~i~~~~~i~-~~~~l~~~  104 (105)
                          .+.++++++++++|++  +++++ ++|||+++
T Consensus       278 ~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~l~~~  311 (343)
T 3gaz_A          278 LAHFGEMLREADALVQTGKL--APRLDPRTFSIAEI  311 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTTCC--CCCBCSCCEETTCH
T ss_pred             hHHHHHHHHHHHHHHHCCCc--ccCccCcEecHHHH
Confidence                2568999999999999  66788 79999985

>1rjw_A ADH-HT, alcohol dehydrogenase; oxidoreductase, NAD, zinc, tetramer; 2.35A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 3pii_A

Probab=99.55  E-value=5e-15  Score=96.92  Aligned_cols=97  Identities=18%  Similarity=0.341  Sum_probs=81.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLE   82 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~   82 (105)
                      ++.+.+++.+ +++|++||++|.+..+..++++++++|+++.+|...++..++...++.+++++.|++.+ +++++++++
T Consensus       219 ~~~~~~~~~~-~~~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~  297 (339)
T 1rjw_A          219 DAAKFMKEKV-GGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEALQ  297 (339)
T ss_dssp             CHHHHHHHHH-SSEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHHH
T ss_pred             cHHHHHHHHh-CCCCEEEECCCCHHHHHHHHHHhhcCCEEEEecccCCCCccCHHHHHhCCcEEEEeccCCHHHHHHHHH
Confidence            4556777777 58999999999977799999999999999999987655556666778899999998776 678999999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|++++  . +++|||+++
T Consensus       298 l~~~g~l~~--~-~~~~~l~~~  316 (339)
T 1rjw_A          298 FAAEGKVKT--I-IEVQPLEKI  316 (339)
T ss_dssp             HHHTTSCCC--C-EEEEEGGGH
T ss_pred             HHHcCCCCc--c-EEEEcHHHH
Confidence            999999954  3 468999985

>3pi7_A NADH oxidoreductase; groes-like fold, NAD(P)-binding rossmann fold, structural GE joint center for structural genomics, JCSG; HET: MSE; 1.71A {Mesorhizobium loti}

Probab=99.55  E-value=1e-15  Score=100.45  Aligned_cols=99  Identities=9%  Similarity=0.030  Sum_probs=81.0

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccc-hhhhhcCeEEEEeecc------
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPL-TPAAAREVDVVGVFRY------   73 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~-~~~~~~~~~i~~~~~~------   73 (105)
                      +++.+.+++.+ ++++|++|||+|++. +..++++++++|+++.+|... .+..++. ..++.+++++.|++.+      
T Consensus       219 ~~~~~~v~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~  297 (349)
T 3pi7_A          219 PDFEATLREVMKAEQPRIFLDAVTGPL-ASAIFNAMPKRARWIIYGRLDPDATVIREPGQLIFQHKHIEGFWLSEWMRQF  297 (349)
T ss_dssp             TTHHHHHHHHHHHHCCCEEEESSCHHH-HHHHHHHSCTTCEEEECCCSCCSCCCCSCTHHHHHSCCEEEECCHHHHHHHT
T ss_pred             HHHHHHHHHHhcCCCCcEEEECCCChh-HHHHHhhhcCCCEEEEEeccCCCCCCCCchhhhhccccEEEEEEehhhhhhC
Confidence            45778888888 469999999999987 799999999999999999644 3455776 7788999999998753      


Q ss_pred             ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          .+.++++++++++|++  +++++++|||+++
T Consensus       298 ~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~  330 (349)
T 3pi7_A          298 KERRGPAILEAQKRFSDGRW--STDVTAVVPLAEA  330 (349)
T ss_dssp             HHHHHHHHHHC-CTTTTSSC--CC-CCEEEEHHHH
T ss_pred             cHHHHHHHHHHHHHHHcCCc--ccccceEEcHHHH
Confidence                3567888899999999  6789999999875

>3qwb_A Probable quinone oxidoreductase; rossmann fold, quinone oxidoreductases, NADPH, cytoplasm and oxidoreductase; HET: NDP; 1.59A {Saccharomyces cerevisiae} PDB: 3qwa_A*

Probab=99.54  E-value=9.7e-15  Score=95.32  Aligned_cols=99  Identities=17%  Similarity=0.258  Sum_probs=80.3

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-----C-
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-----K-   74 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-----~-   74 (105)
                      +++.+.+++.+ +.++|++|||+|+.. ++.++++++++|+++.+|...++ ..++...+..+++++.++...     + 
T Consensus       203 ~~~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (334)
T 3qwb_A          203 EDILRQVLKFTNGKGVDASFDSVGKDT-FEISLAALKRKGVFVSFGNASGLIPPFSITRLSPKNITLVRPQLYGYIADPE  281 (334)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEECCGGGG-HHHHHHHEEEEEEEEECCCTTCCCCCBCGGGGTTTTCEEECCCGGGGSCSHH
T ss_pred             chHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhccCCEEEEEcCCCCCCCCcchhhhhhCceEEEEEEeccccCCHH
Confidence            45677888888 569999999999865 99999999999999999986543 357777788899999876432     2 


Q ss_pred             ---CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 ---NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ---~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         +.++++++++++|+++  +.++++|||+++
T Consensus       282 ~~~~~~~~~~~l~~~g~l~--~~i~~~~~l~~~  312 (334)
T 3qwb_A          282 EWKYYSDEFFGLVNSKKLN--IKIYKTYPLRDY  312 (334)
T ss_dssp             HHHHHHHHHHHHHHTTSSC--CCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHCCCcc--CceeeEEcHHHH
Confidence               2347899999999995  458999999985

>4a27_A Synaptic vesicle membrane protein VAT-1 homolog-L; oxidoreductase; 2.10A {Homo sapiens}

Probab=99.54  E-value=2.2e-15  Score=98.97  Aligned_cols=99  Identities=18%  Similarity=0.266  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-----------------ccccchhhhhcCe
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-----------------MTVPLTPAAAREV   65 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-----------------~~~~~~~~~~~~~   65 (105)
                      +++.+++++.+++|+|++|||+|++. +..++++++++|+++.+|.....                 ..++...++.+++
T Consensus       195 ~~~~~~~~~~~~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  273 (349)
T 4a27_A          195 ADYVQEVKRISAEGVDIVLDCLCGDN-TGKGLSLLKPLGTYILYGSSNMVTGETKSFFSFAKSWWQVEKVNPIKLYEENK  273 (349)
T ss_dssp             SCHHHHHHHHCTTCEEEEEEECC--------CTTEEEEEEEEEEC-------------------------CHHHHHHHTC
T ss_pred             ccHHHHHHHhcCCCceEEEECCCchh-HHHHHHHhhcCCEEEEECCCcccccccccccccccccccccccCHHHHhhcCc
Confidence            45677888888889999999999987 69999999999999999974310                 1244456678899


Q ss_pred             EEEEeecc------------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           66 DVVGVFRY------------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        66 ~i~~~~~~------------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++.|+...            +++++++++++++|++  +++++++|||+++
T Consensus       274 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~  322 (349)
T 4a27_A          274 VIAGFSLLNLLFKQGRAGLIRGVVEKLIGLYNQKKI--KPVVDSLWALEEV  322 (349)
T ss_dssp             EEEEECHHHHHHTSCCHHHHHHHHHHHHHHHHTTSC--CCCEEEEECGGGH
T ss_pred             eEEEEeehheeccccchHHHHHHHHHHHHHHHCCCc--cccccceECHHHH
Confidence            99988642            3568899999999999  6789999999985

>2cdc_A Glucose dehydrogenase glucose 1-dehydrogenase, DHG-1; reductase, oxidoreductase, MDR family; HET: XYS XYP NAP; 1.50A {Sulfolobus solfataricus} PDB: 2cdb_A* 2cd9_A 2cda_A*

Probab=99.54  E-value=4.6e-16  Score=102.73  Aligned_cols=97  Identities=16%  Similarity=0.248  Sum_probs=81.4

Q ss_pred             HHHHHHcCCCCcEEEEccCChHHH-HHHHHhhhcCCEEEEEcCCCCC-ccccchh---hhhcCeEEEEeecc-CCCHHHH
Q 040104            7 EKIDKAMGTGIDVSFDCAGFNKTM-STALSATRAGGKVCLVGMGHHE-MTVPLTP---AAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         7 ~~~~~~~~~g~d~vid~~g~~~~~-~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~---~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +++++ +++++|++||++|.+..+ ..++++++++|+++.+|..... ..++...   ++.+++++.|++.+ +.+++++
T Consensus       238 ~~~~~-~~~~~d~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  316 (366)
T 2cdc_A          238 DKLKD-SVGKFDVIIDATGADVNILGNVIPLLGRNGVLGLFGFSTSGSVPLDYKTLQEIVHTNKTIIGLVNGQKPHFQQA  316 (366)
T ss_dssp             HHHHH-HHCCEEEEEECCCCCTHHHHHHGGGEEEEEEEEECSCCCSCEEEEEHHHHHHHHHTTCEEEECCCCCHHHHHHH
T ss_pred             HHHHH-hCCCCCEEEECCCChHHHHHHHHHHHhcCCEEEEEecCCCCccccChhhhHHHHhcCcEEEEecCCCHHHHHHH
Confidence            45555 546899999999997668 9999999999999999976543 4566666   78899999998776 6789999


Q ss_pred             HHHHHcCCCC----CCCceeeeeeCCCC
Q 040104           81 LEFLRSGKID----IKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~----~~~~i~~~~~l~~~  104 (105)
                      ++++++|+++    ++++|+++|||+++
T Consensus       317 ~~l~~~g~i~~~~~~~~~i~~~~~l~~~  344 (366)
T 2cdc_A          317 VVHLASWKTLYPKAAKMLITKTVSINDE  344 (366)
T ss_dssp             HHHHHHHHHHSHHHHTTSEEEEEETTCH
T ss_pred             HHHHHcCCCCcccchhhcEEEEEcHHHH
Confidence            9999999966    58899999999985

>3s2e_A Zinc-containing alcohol dehydrogenase superfamily; FURX, oxidoreductase; HET: NAD; 1.76A {Ralstonia eutropha} PDB: 3s1l_A* 3s2f_A* 3s2g_A* 3s2i_A* 1llu_A* 3meq_A*

Probab=99.54  E-value=4.9e-15  Score=96.92  Aligned_cols=98  Identities=18%  Similarity=0.307  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      +++.+.+++..+ ++|++||++|+...++.++++++++|+++.+|.+.++..++...++.+++++.|++.. ++++++++
T Consensus       220 ~~~~~~~~~~~g-~~d~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~  298 (340)
T 3s2e_A          220 TDPAAWLQKEIG-GAHGVLVTAVSPKAFSQAIGMVRRGGTIALNGLPPGDFGTPIFDVVLKGITIRGSIVGTRSDLQESL  298 (340)
T ss_dssp             SCHHHHHHHHHS-SEEEEEESSCCHHHHHHHHHHEEEEEEEEECSCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHH
T ss_pred             cCHHHHHHHhCC-CCCEEEEeCCCHHHHHHHHHHhccCCEEEEeCCCCCCCCCCHHHHHhCCeEEEEEecCCHHHHHHHH
Confidence            356677777335 8999999999988899999999999999999987766667777788999999999887 78899999


Q ss_pred             HHHHcCCCCCCCceeeeeeCCCC
Q 040104           82 EFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        82 ~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++++|++++  .+ ++|||+++
T Consensus       299 ~l~~~g~l~~--~~-~~~~l~~~  318 (340)
T 3s2e_A          299 DFAAHGDVKA--TV-STAKLDDV  318 (340)
T ss_dssp             HHHHTTSCCC--CE-EEECGGGH
T ss_pred             HHHHhCCCCc--eE-EEEeHHHH
Confidence            9999999954  44 57899975

>1kol_A Formaldehyde dehydrogenase; oxidoreductase; HET: NAD; 1.65A {Pseudomonas putida} SCOP: b.35.1.2 c.2.1.1

Probab=99.52  E-value=6.6e-15  Score=98.11  Aligned_cols=100  Identities=14%  Similarity=0.222  Sum_probs=79.8

Q ss_pred             HHHHHHHHcC-CCCcEEEEccCCh---------------HHHHHHHHhhhcCCEEEEEcCC-C-C-----------Cccc
Q 040104            5 EVEKIDKAMG-TGIDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGMG-H-H-----------EMTV   55 (105)
Q Consensus         5 ~~~~~~~~~~-~g~d~vid~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~-~-~-----------~~~~   55 (105)
                      +.+++++.++ .|+|++||++|++               ..+..++++++++|+++.+|.. . .           ...+
T Consensus       242 ~~~~v~~~t~g~g~Dvvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~  321 (398)
T 1kol_A          242 LHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSLSI  321 (398)
T ss_dssp             HHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCCCC
T ss_pred             HHHHHHHHhCCCCCCEEEECCCCcccccccccccccchHHHHHHHHHHHhcCCEEEEeccccCCcccccccccccccccc
Confidence            6778888884 5899999999986               2589999999999999999975 1 1           1234


Q ss_pred             cchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCC-CCCceeeeeeCCCC
Q 040104           56 PLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKID-IKPLVTHRFGFSQK  104 (105)
Q Consensus        56 ~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~-~~~~i~~~~~l~~~  104 (105)
                      ++..++.+++++.++... ...++++++++++|+++ +.++++++|||+|+
T Consensus       322 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~l~~~g~l~~~~~~i~~~~~l~~~  372 (398)
T 1kol_A          322 RFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDRINIAEVVGVQVISLDDA  372 (398)
T ss_dssp             CHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTSCCHHHHHTEEEECGGGH
T ss_pred             cHHHHhhcccEEEecccChHHHHHHHHHHHHcCCCCCccceeEEEEcHHHH
Confidence            555667899999887554 56788999999999996 33678899999985

>1h2b_A Alcohol dehydrogenase; oxidoreductase, archaea, hyperthermophIle, zinc; HET: OCA NAJ; 1.62A {Aeropyrum pernix} SCOP: b.35.1.2 c.2.1.1

Probab=99.52  E-value=8.9e-15  Score=96.42  Aligned_cols=94  Identities=18%  Similarity=0.244  Sum_probs=79.5

Q ss_pred             HHHHHHHHcC-CCCcEEEEccCChH--HHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            5 EVEKIDKAMG-TGIDVSFDCAGFNK--TMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         5 ~~~~~~~~~~-~g~d~vid~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +.+.+++.++ .++|++||++|++.  .+..++++  ++|+++.+|.+..+ .+++..++.+++++.|++.+ +.+++++
T Consensus       242 ~~~~v~~~~~g~g~Dvvid~~G~~~~~~~~~~~~~--~~G~~v~~g~~~~~-~~~~~~~~~~~~~i~g~~~~~~~~~~~~  318 (359)
T 1h2b_A          242 PVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLG--RMGRLIIVGYGGEL-RFPTIRVISSEVSFEGSLVGNYVELHEL  318 (359)
T ss_dssp             HHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEE--EEEEEEECCCSSCC-CCCHHHHHHTTCEEEECCSCCHHHHHHH
T ss_pred             HHHHHHHHhCCCCCcEEEECCCCchHHHHHHHhhc--CCCEEEEEeCCCCC-CCCHHHHHhCCcEEEEecCCCHHHHHHH
Confidence            5567788884 48999999999985  68999888  99999999986654 67777778899999998776 6789999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++  ++.+ ++|||+|+
T Consensus       319 ~~l~~~g~l--~~~i-~~~~l~~~  339 (359)
T 1h2b_A          319 VTLALQGKV--RVEV-DIHKLDEI  339 (359)
T ss_dssp             HHHHHTTSC--CCCE-EEEEGGGH
T ss_pred             HHHHHcCCC--cceE-EEEeHHHH
Confidence            999999998  5567 89999985

>4eye_A Probable oxidoreductase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.10A {Mycobacterium abscessus}

Probab=99.50  E-value=1.5e-14  Score=94.79  Aligned_cols=98  Identities=20%  Similarity=0.304  Sum_probs=74.7

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-------
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-------   73 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-------   73 (105)
                      +++.+.+++.++ .++|++|||+|++. +..++++++++|+++.+|..... ..++...++.+++++.|+...       
T Consensus       213 ~~~~~~v~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  291 (342)
T 4eye_A          213 EGWAKAVREATGGAGVDMVVDPIGGPA-FDDAVRTLASEGRLLVVGFAAGGIPTIKVNRLLLRNASLIGVAWGEFLRTHA  291 (342)
T ss_dssp             TTHHHHHHHHTTTSCEEEEEESCC--C-HHHHHHTEEEEEEEEEC----------CCCCGGGTTCEEEECCHHHHHHHCT
T ss_pred             hhHHHHHHHHhCCCCceEEEECCchhH-HHHHHHhhcCCCEEEEEEccCCCCCccCHHHHhhcCCEEEEEehhhhhhcCH
Confidence            456778888885 49999999999976 99999999999999999976533 356666778899999998743       


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         .+.++++++++++| +  +++++++|||+++
T Consensus       292 ~~~~~~~~~~~~l~~~g-l--~~~i~~~~~l~~~  322 (342)
T 4eye_A          292 DYLYETQAGLEKLVAEG-M--RPPVSARIPLSEG  322 (342)
T ss_dssp             THHHHHHHHHHHHHHTT-C--CCCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHcC-C--CCCcceEEeHHHH
Confidence               13588999999999 7  7889999999985

>2hcy_A Alcohol dehydrogenase 1; tetramer of asymmetric dimers, zinc coordination, intramolec disulfide bonds, oxidoreductase; HET: 8ID; 2.44A {Saccharomyces cerevisiae}

Probab=99.50  E-value=1.5e-14  Score=94.81  Aligned_cols=99  Identities=18%  Similarity=0.244  Sum_probs=81.5

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +++.+.+++.+++++|++||++|.+..+..++++++++|+++.+|... .+..++...++.+++++.|++.. ..+++++
T Consensus       225 ~~~~~~~~~~~~~~~D~vi~~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  304 (347)
T 2hcy_A          225 KDIVGAVLKATDGGAHGVINVSVSEAAIEASTRYVRANGTTVLVGMPAGAKCCSDVFNQVVKSISIVGSYVGNRADTREA  304 (347)
T ss_dssp             SCHHHHHHHHHTSCEEEEEECSSCHHHHHHHTTSEEEEEEEEECCCCTTCEEEEEHHHHHHTTCEEEECCCCCHHHHHHH
T ss_pred             HhHHHHHHHHhCCCCCEEEECCCcHHHHHHHHHHHhcCCEEEEEeCCCCCCCCCCHHHHhhCCcEEEEccCCCHHHHHHH
Confidence            456677777774489999999999777999999999999999999765 33456666778899999998776 6789999


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++++|++++  . +++|||+|+
T Consensus       305 ~~l~~~g~l~~--~-~~~~~l~~~  325 (347)
T 2hcy_A          305 LDFFARGLVKS--P-IKVVGLSTL  325 (347)
T ss_dssp             HHHHHTTSCCC--C-EEEEEGGGH
T ss_pred             HHHHHhCCCcc--c-eEEEcHHHH
Confidence            99999999954  3 468999985

>4b7c_A Probable oxidoreductase; NADP cofactor, rossmann fold; HET: MES; 2.10A {Pseudomonas aeruginosa PA01} PDB: 4b7x_A*

Probab=99.49  E-value=3.2e-14  Score=92.89  Aligned_cols=99  Identities=16%  Similarity=0.177  Sum_probs=80.1

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-------CccccchhhhhcCeEEEEeecc--
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-------EMTVPLTPAAAREVDVVGVFRY--   73 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~--   73 (105)
                      +++.+.+++.+++++|++|||+|++. +..++++++++|+++.+|....       ...+++..++.+++++.|+..+  
T Consensus       205 ~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  283 (336)
T 4b7c_A          205 EDLAAGLKRECPKGIDVFFDNVGGEI-LDTVLTRIAFKARIVLCGAISQYNNKEAVRGPANYLSLLVNRARMEGMVVMDY  283 (336)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCGGGGC------CCTTTTHHHHTTCEEEECCGGGG
T ss_pred             HHHHHHHHHhcCCCceEEEECCCcch-HHHHHHHHhhCCEEEEEeecccccCCcccccchhHHHHHhCCcEEEEEEhhhh
Confidence            45667788888779999999999865 9999999999999999997541       1355666788899999998865  


Q ss_pred             ----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          ++.++++++++++|++++  .+..+|||+++
T Consensus       284 ~~~~~~~~~~~~~l~~~g~l~~--~~~~~~~l~~~  316 (336)
T 4b7c_A          284 AQRFPEGLKEMATWLAEGKLQS--REDIVEGLETF  316 (336)
T ss_dssp             GGGHHHHHHHHHHHHHTTSSCC--CEEEEECGGGH
T ss_pred             hhhhHHHHHHHHHHHHCCCccc--ceeeecCHHHH
Confidence                267889999999999955  45556899875

>1gu7_A Enoyl-[acyl-carrier-protein] reductase [NADPH, B-specific] 1,mitochondrial; oxidoreductase, thioester reduction, fatty acids; 1.70A {Candida tropicalis} SCOP: b.35.1.2 c.2.1.1 PDB: 1guf_A* 1n9g_B* 1n9g_A* 1gyr_A 1h0k_A

Probab=99.48  E-value=9.3e-14  Score=91.55  Aligned_cols=97  Identities=13%  Similarity=0.166  Sum_probs=76.3

Q ss_pred             hHHHHHHHHHc---CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-----
Q 040104            3 AEEVEKIDKAM---GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-----   73 (105)
Q Consensus         3 ~~~~~~~~~~~---~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-----   73 (105)
                      +++.+++++.+   ++|+|++|||+|++. ...++++++++|+++.+|.... +..++...+..+++++.|++..     
T Consensus       229 ~~~~~~i~~~t~~~~~g~Dvvid~~G~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~  307 (364)
T 1gu7_A          229 REFGPTIKEWIKQSGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKN  307 (364)
T ss_dssp             GGGHHHHHHHHHHHTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTT
T ss_pred             HHHHHHHHHHhhccCCCceEEEECCCchh-HHHHHHHhccCCEEEEecCCCCCCcccCHHHHhhcCcEEEEEchhHhccc
Confidence            35667788887   568999999999988 4589999999999999997542 4456666778899999998653     


Q ss_pred             -----CCCHHHHHHHHHcCCCCCCCceeeeeeCC
Q 040104           74 -----KNTWPLCLEFLRSGKIDIKPLVTHRFGFS  102 (105)
Q Consensus        74 -----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~  102 (105)
                           ...++++++++++|++++...  .+|+++
T Consensus       308 ~~~~~~~~~~~~~~l~~~g~l~~~~~--~~~~~~  339 (364)
T 1gu7_A          308 NKELKTSTLNQIIAWYEEGKLTDAKS--IETLYD  339 (364)
T ss_dssp             CHHHHHHHHHHHHHHHHHTCCCCCCC--EEEECC
T ss_pred             CHHHHHHHHHHHHHHHHcCCcccccc--eEEecC
Confidence                 246899999999999976544  456664

>3jyn_A Quinone oxidoreductase; rossmann fold, protein-NADPH complex; HET: NDP; 2.01A {Pseudomonas syringae PV} PDB: 3jyl_A*

Probab=99.48  E-value=7.7e-14  Score=90.80  Aligned_cols=99  Identities=18%  Similarity=0.221  Sum_probs=77.0

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhc-CeEEEEeec----c-C
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAR-EVDVVGVFR----Y-K   74 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~-~~~i~~~~~----~-~   74 (105)
                      +++.+.+++.+ +.++|++|||+|+.. +..++++++++|+++.+|...++. .++...+..+ ++++.+...    . +
T Consensus       195 ~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (325)
T 3jyn_A          195 EDVAKRVLELTDGKKCPVVYDGVGQDT-WLTSLDSVAPRGLVVSFGNASGPVSGVNLGILAQKDSVYVTRPTLGSYANNA  273 (325)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEESSCGGG-HHHHHTTEEEEEEEEECCCTTCCCCSCCTHHHHHTTSCEEECCCHHHHSCST
T ss_pred             ccHHHHHHHHhCCCCceEEEECCChHH-HHHHHHHhcCCCEEEEEecCCCCCCCCCHHHHhhcCcEEEEeeeeeeecCCH
Confidence            45678888888 469999999999965 999999999999999999866543 5666666666 667765432    1 3


Q ss_pred             CCH----HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 NTW----PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~----~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .++    +++++++++|++++  .++++|||+++
T Consensus       274 ~~~~~~~~~~~~l~~~g~l~~--~i~~~~~l~~~  305 (325)
T 3jyn_A          274 QNLQTMADELFDMLASGKLKV--DGIEQYALKDA  305 (325)
T ss_dssp             THHHHHHHHHHHHHHTTSSCC--CCCEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHCCCeeC--ccccEEcHHHH
Confidence            444    58999999999955  47899999985

>2j3h_A NADP-dependent oxidoreductase P1; double bond reductase (AT5G16970), APO form; 2.5A {Arabidopsis thaliana} PDB: 2j3i_A* 2j3j_A* 2j3k_A*

Probab=99.47  E-value=6.3e-14  Score=91.72  Aligned_cols=98  Identities=18%  Similarity=0.292  Sum_probs=78.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC------CccccchhhhhcCeEEEEeecc--CC
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH------EMTVPLTPAAAREVDVVGVFRY--KN   75 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~~~~~~~~~~~~~~i~~~~~~--~~   75 (105)
                      ++.+.+++.+++++|++||++|+. .+..++++++++|+++.+|....      ...++...++++++++.|++.+  ..
T Consensus       213 ~~~~~~~~~~~~~~d~vi~~~g~~-~~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~  291 (345)
T 2j3h_A          213 DLTAALKRCFPNGIDIYFENVGGK-MLDAVLVNMNMHGRIAVCGMISQYNLENQEGVHNLSNIIYKRNRIQGFVVSDFYD  291 (345)
T ss_dssp             CSHHHHHHHCTTCEEEEEESSCHH-HHHHHHTTEEEEEEEEECCCGGGTTCSSCCCBSCTTHHHHHTCEEEECCGGGGGG
T ss_pred             HHHHHHHHHhCCCCcEEEECCCHH-HHHHHHHHHhcCCEEEEEccccccccCCccccccHHHHhhhceeeceeeehhhhh
Confidence            445667776666899999999985 59999999999999999997542      2345666778899999998654  22


Q ss_pred             ----CHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           76 ----TWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        76 ----~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                          .++++++++++|++  +++++++|||+++
T Consensus       292 ~~~~~~~~~~~l~~~g~i--~~~~~~~~~l~~~  322 (345)
T 2j3h_A          292 KYSKFLEFVLPHIREGKI--TYVEDVADGLEKA  322 (345)
T ss_dssp             GHHHHHHHHHHHHHTTSS--CCCEEEEESGGGS
T ss_pred             hHHHHHHHHHHHHHCCCC--cCcccccCCHHHH
Confidence                38899999999999  5677778999986

>2j8z_A Quinone oxidoreductase; medium-chain dehydrogenase- reductases, QUIN oxidoreductase, oxidative stress response; HET: NAP; 2.50A {Homo sapiens} PDB: 2oby_A*

Probab=99.46  E-value=6.8e-14  Score=92.06  Aligned_cols=100  Identities=14%  Similarity=0.244  Sum_probs=77.1

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccc-hhhhhcCeEEEEeecc-CC-C--
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPL-TPAAAREVDVVGVFRY-KN-T--   76 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~-~~~~~~~~~i~~~~~~-~~-~--   76 (105)
                      ++.+++.+.+ +.++|++|||+|++. +..++++++++|+++.+|...+ ...++. ..++.+++++.|+... .. .  
T Consensus       218 ~~~~~~~~~~~~~~~d~vi~~~G~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~  296 (354)
T 2j8z_A          218 DFSEATLKFTKGAGVNLILDCIGGSY-WEKNVNCLALDGRWVLYGLMGGGDINGPLFSKLLFKRGSLITSLLRSRDNKYK  296 (354)
T ss_dssp             CHHHHHHHHTTTSCEEEEEESSCGGG-HHHHHHHEEEEEEEEECCCTTCSCCCSCHHHHHHHTTCEEEECCSTTCCHHHH
T ss_pred             HHHHHHHHHhcCCCceEEEECCCchH-HHHHHHhccCCCEEEEEeccCCCccCCChhHHHHhCCCEEEEEEccccccccc
Confidence            4567777777 458999999999985 9999999999999999997553 345666 6778899999998754 22 1  


Q ss_pred             -------HHHHHHHHHcC-CCCCCCceeeeeeCCCC
Q 040104           77 -------WPLCLEFLRSG-KIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        77 -------~~~~~~~v~~g-~i~~~~~i~~~~~l~~~  104 (105)
                             ++++++++++| +++++++++++|||+++
T Consensus       297 ~~~~~~~~~~~~~l~~~g~~~~l~~~i~~~~~l~~~  332 (354)
T 2j8z_A          297 QMLVNAFTEQILPHFSTEGPQRLLPVLDRIYPVTEI  332 (354)
T ss_dssp             HHHHHHHHHHTGGGGTC---CCCCCCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHHcCCCccccCccceEEcHHHH
Confidence                   24578899999 33347889999999985

>3gqv_A Enoyl reductase; medium-chain reductase (MDR superfamily), rossmann fold, NAD binding, oxidoreductase; HET: NAP; 1.74A {Aspergillus terreus} PDB: 3b6z_A* 3b70_A*

Probab=99.46  E-value=9.5e-14  Score=91.90  Aligned_cols=102  Identities=15%  Similarity=0.221  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhh-hcCCEEEEEcCCCC------Ccccc---chhhhhcCeEEEEeec
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSAT-RAGGKVCLVGMGHH------EMTVP---LTPAAAREVDVVGVFR   72 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l-~~~G~~v~~g~~~~------~~~~~---~~~~~~~~~~i~~~~~   72 (105)
                      +++.+.+++.+++++|++|||+|++..++.+++++ +++|+++.+|....      ....+   ...++.+++++.|++.
T Consensus       218 ~~~~~~v~~~t~g~~d~v~d~~g~~~~~~~~~~~l~~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~g~~~  297 (371)
T 3gqv_A          218 PNLAQTIRTYTKNNLRYALDCITNVESTTFCFAAIGRAGGHYVSLNPFPEHAATRKMVTTDWTLGPTIFGEGSTWPAPYG  297 (371)
T ss_dssp             TTHHHHHHHHTTTCCCEEEESSCSHHHHHHHHHHSCTTCEEEEESSCCCC---CCSCEEEEECCGGGGGTSCBSCSTTTC
T ss_pred             chHHHHHHHHccCCccEEEECCCchHHHHHHHHHhhcCCCEEEEEecCccccccccccceeeeeeeeecccccccccccc
Confidence            46778899999767999999999987799999999 59999999996432      12222   1245678888887754


Q ss_pred             c--C--------CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           73 Y--K--------NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        73 ~--~--------~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .  .        +.++++++++++|++++.++++++|||+++
T Consensus       298 ~~~~~~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~l~~~  339 (371)
T 3gqv_A          298 RPGSEEERQFGEDLWRIAGQLVEDGRLVHHPLRVVQGGFDHI  339 (371)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHHHHTTSSCCCCEEEEEECHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHCCeeeCCcCeecCCcHHHH
Confidence            3  1        124578899999999998888888999875

>1wly_A CAAR, 2-haloacrylate reductase; NADPH-dependent oxidoreductase, oxidoreductase; 1.30A {Burkholderia SP}

Probab=99.46  E-value=7.1e-14  Score=91.19  Aligned_cols=98  Identities=15%  Similarity=0.262  Sum_probs=78.9

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccch-hhhhcC--eEEEEeecc-----
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLT-PAAARE--VDVVGVFRY-----   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~-~~~~~~--~~i~~~~~~-----   73 (105)
                      +..+++.+.+ +.++|++|||+|+.. +..++++++++|+++.+|...+ ...++.. .++.++  +++.|++..     
T Consensus       201 ~~~~~i~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~  279 (333)
T 1wly_A          201 DFAEVVREITGGKGVDVVYDSIGKDT-LQKSLDCLRPRGMCAAYGHASGVADPIRVVEDLGVRGSLFITRPALWHYMSNR  279 (333)
T ss_dssp             CHHHHHHHHHTTCCEEEEEECSCTTT-HHHHHHTEEEEEEEEECCCTTCCCCCCCHHHHTTTTTSCEEECCCGGGGSCSH
T ss_pred             HHHHHHHHHhCCCCCeEEEECCcHHH-HHHHHHhhccCCEEEEEecCCCCcCCCChhHhhhhcCCcEEEEEeehhhccCH
Confidence            4566777777 468999999999954 9999999999999999997653 3456666 677888  999887542     


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         .+.++++++++++|++  +++++++|||+++
T Consensus       280 ~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~  311 (333)
T 1wly_A          280 SEIDEGSKCLFDAVKAGVL--HSSVAKTFPLREA  311 (333)
T ss_dssp             HHHHHHHHHHHHHHHTTSC--CCCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHCCCc--CCCcceEEeHHHH
Confidence               1358899999999999  6689999999985

>1yqd_A Sinapyl alcohol dehydrogenase; lignin, monolignol, oxidoreductase, zinc-dependent, plant DE biosynthesis, substrate inhibition; HET: NAP; 1.65A {Populus tremuloides} PDB: 1yqx_A*

Probab=99.46  E-value=3.9e-14  Score=93.62  Aligned_cols=93  Identities=16%  Similarity=0.146  Sum_probs=77.0

Q ss_pred             HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHc
Q 040104            8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRS   86 (105)
Q Consensus         8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~   86 (105)
                      .+++.++ ++|++||++|.+..+..++++++++|+++.+|....+..++...++.+++++.|++.+ ..+++++++++++
T Consensus       244 ~~~~~~~-~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~  322 (366)
T 1yqd_A          244 QMQAAAG-TLDGIIDTVSAVHPLLPLFGLLKSHGKLILVGAPEKPLELPAFSLIAGRKIVAGSGIGGMKETQEMIDFAAK  322 (366)
T ss_dssp             HHHHTTT-CEEEEEECCSSCCCSHHHHHHEEEEEEEEECCCCSSCEEECHHHHHTTTCEEEECCSCCHHHHHHHHHHHHH
T ss_pred             HHHHhhC-CCCEEEECCCcHHHHHHHHHHHhcCCEEEEEccCCCCCCcCHHHHHhCCcEEEEecCCCHHHHHHHHHHHHc
Confidence            4455554 8999999999875589999999999999999986655566767778899999998776 5789999999999


Q ss_pred             CCCCCCCceeeeeeCCCC
Q 040104           87 GKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        87 g~i~~~~~i~~~~~l~~~  104 (105)
                      |++++  .+ ++|||+|+
T Consensus       323 g~l~~--~~-~~~~l~~~  337 (366)
T 1yqd_A          323 HNITA--DI-EVISTDYL  337 (366)
T ss_dssp             TTCCC--CE-EEECGGGH
T ss_pred             CCCCC--ce-EEEcHHHH
Confidence            99954  45 59999985

>2cf5_A Atccad5, CAD, cinnamyl alcohol dehydrogenase; lignin biosynthesis, metal-binding, NADP, oxidoreductase, zinc; 2.0A {Arabidopsis thaliana} PDB: 2cf6_A*

Probab=99.45  E-value=2.3e-14  Score=94.38  Aligned_cols=92  Identities=15%  Similarity=0.206  Sum_probs=75.0

Q ss_pred             HHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCcc-ccchhhhhcCeEEEEeecc-CCCHHHHHHHHH
Q 040104            8 KIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMT-VPLTPAAAREVDVVGVFRY-KNTWPLCLEFLR   85 (105)
Q Consensus         8 ~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~-~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~   85 (105)
                      .+++.+ +++|++||++|.+..++.++++++++|+++.+|....+.. ++.. ++.+++++.|++.+ ..++++++++++
T Consensus       237 ~~~~~~-~g~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~-~~~~~~~i~g~~~~~~~~~~~~~~l~~  314 (357)
T 2cf5_A          237 KMSELA-DSLDYVIDTVPVHHALEPYLSLLKLDGKLILMGVINNPLQFLTPL-LMLGRKVITGSFIGSMKETEEMLEFCK  314 (357)
T ss_dssp             HHHHST-TTEEEEEECCCSCCCSHHHHTTEEEEEEEEECSCCSSCCCCCHHH-HHHHTCEEEECCSCCHHHHHHHHHHHH
T ss_pred             HHHHhc-CCCCEEEECCCChHHHHHHHHHhccCCEEEEeCCCCCCccccCHH-HHhCccEEEEEccCCHHHHHHHHHHHH
Confidence            444444 3899999999987568999999999999999997654444 5555 78899999998876 678999999999


Q ss_pred             cCCCCCCCceeeeeeCCCC
Q 040104           86 SGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        86 ~g~i~~~~~i~~~~~l~~~  104 (105)
                      +|++++  .+ ++|||+++
T Consensus       315 ~g~l~~--~~-~~~~l~~~  330 (357)
T 2cf5_A          315 EKGLSS--II-EVVKMDYV  330 (357)
T ss_dssp             HTTCCC--CE-EEEEGGGH
T ss_pred             cCCCCC--ce-EEEeHHHH
Confidence            999954  45 59999985

>3two_A Mannitol dehydrogenase; cinnamyl-alcohol dehydrogenase, NADP(H) oxidoreductase; HET: NDP; 2.18A {Helicobacter pylori}

Probab=99.44  E-value=3.5e-14  Score=93.15  Aligned_cols=86  Identities=12%  Similarity=0.026  Sum_probs=74.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCcc-ccchhhh-hcCeEEEEeecc-CCCHHHHHHHHHcCCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMT-VPLTPAA-AREVDVVGVFRY-KNTWPLCLEFLRSGKIDI   91 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~-~~~~~~~-~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~   91 (105)
                      ++|++||++|++..+..++++++++|+++.+|.+. .+.. ++...+. .+++++.|++.+ ..+++++++++++|++++
T Consensus       234 ~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l~~  313 (348)
T 3two_A          234 ELDFIISTIPTHYDLKDYLKLLTYNGDLALVGLPPVEVAPVLSVFDFIHLGNRKVYGSLIGGIKETQEMVDFSIKHNIYP  313 (348)
T ss_dssp             CEEEEEECCCSCCCHHHHHTTEEEEEEEEECCCCCGGGCCEEEHHHHHHTCSCEEEECCSCCHHHHHHHHHHHHHTTCCC
T ss_pred             CCCEEEECCCcHHHHHHHHHHHhcCCEEEEECCCCCCCcccCCHHHHHhhCCeEEEEEecCCHHHHHHHHHHHHhCCCCc
Confidence            79999999999856999999999999999999876 5555 6766777 899999999887 678999999999999954


Q ss_pred             CCceeeeeeCCCC
Q 040104           92 KPLVTHRFGFSQK  104 (105)
Q Consensus        92 ~~~i~~~~~l~~~  104 (105)
                        .+ ++|||+++
T Consensus       314 --~~-~~~~l~~~  323 (348)
T 3two_A          314 --EI-DLILGKDI  323 (348)
T ss_dssp             --CE-EEECGGGH
T ss_pred             --eE-EEEEHHHH
Confidence              44 69999985

>1yb5_A Quinone oxidoreductase; medium-chain dehydrogenase/reductase, quinon reduction, structural genomics, structural genomics consort; HET: NAP; 1.85A {Homo sapiens} SCOP: b.35.1.2 c.2.1.1

Probab=99.44  E-value=1.3e-13  Score=90.63  Aligned_cols=98  Identities=23%  Similarity=0.417  Sum_probs=76.9

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc---CCCH-
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY---KNTW-   77 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~-   77 (105)
                      +++.+++++.++ +++|++|||+|++. +..++++++++|+++.+|.. .+..++...++.+++++.|+...   .+++ 
T Consensus       225 ~~~~~~~~~~~~~~~~D~vi~~~G~~~-~~~~~~~l~~~G~iv~~g~~-~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~  302 (351)
T 1yb5_A          225 VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSR-GTIEINPRDTMAKESSIIGVTLFSSTKEEFQ  302 (351)
T ss_dssp             TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCC-SCEEECTHHHHTTTCEEEECCGGGCCHHHHH
T ss_pred             chHHHHHHHHcCCCCcEEEEECCChHH-HHHHHHhccCCCEEEEEecC-CCCccCHHHHHhCCcEEEEEEeecCCHHHHH
Confidence            356677787774 58999999999875 89999999999999999964 33456666778899999998542   2334 


Q ss_pred             ---HHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           78 ---PLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        78 ---~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                         +.+.+++++|++  +++++++|||+++
T Consensus       303 ~~~~~l~~~~~~g~l--~~~i~~~~~l~~~  330 (351)
T 1yb5_A          303 QYAAALQAGMEIGWL--KPVIGSQYPLEKV  330 (351)
T ss_dssp             HHHHHHHHHHHHTCC--CCCEEEEEEGGGH
T ss_pred             HHHHHHHHHHHCCCc--cCccceEEcHHHH
Confidence               445667888988  6789999999985

>3fbg_A Putative arginate lyase; structural genomics, unknown function, PSI-2, protein structure initiative; 1.60A {Staphylococcus haemolyticus}

Probab=99.42  E-value=1.6e-13  Score=89.95  Aligned_cols=97  Identities=7%  Similarity=0.026  Sum_probs=77.6

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc----------
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----------   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----------   73 (105)
                      ++.+.+++..++++|++|||+|++..+..++++++++|+++.+|...  ..+++..+..+++++.+++.+          
T Consensus       205 ~~~~~~~~~~~~g~Dvv~d~~g~~~~~~~~~~~l~~~G~iv~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  282 (346)
T 3fbg_A          205 SLLNQFKTQGIELVDYVFCTFNTDMYYDDMIQLVKPRGHIATIVAFE--NDQDLNALKPKSLSFSHEFMFARPLNQTDDM  282 (346)
T ss_dssp             CHHHHHHHHTCCCEEEEEESSCHHHHHHHHHHHEEEEEEEEESSCCS--SCBCGGGGTTTTCEEEECCTTHHHHTTCTTT
T ss_pred             cHHHHHHHhCCCCccEEEECCCchHHHHHHHHHhccCCEEEEECCCC--CCCccccccccceEEEEEEEecccccchhhH
Confidence            45667777756699999999999887899999999999999987533  346666777899999987643          


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeee---eCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRF---GFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~---~l~~~  104 (105)
                         .+.++++++++++|++  ++.++++|   ||+++
T Consensus       283 ~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~~~l~~~  317 (346)
T 3fbg_A          283 IKHHEYLEDITNKVEQNIY--QPTTTKVIEGLTTENI  317 (346)
T ss_dssp             HHHHHHHHHHHHHHHTTSS--CCCEEEEEESCCHHHH
T ss_pred             HHHHHHHHHHHHHHHCCCE--ECCccceecCCCHHHH
Confidence               1347889999999999  67788887   77764

>1qor_A Quinone oxidoreductase; HET: NAP; 2.20A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.41  E-value=3e-13  Score=87.98  Aligned_cols=99  Identities=18%  Similarity=0.230  Sum_probs=77.2

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhc-CeEEEEeec----c--
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAR-EVDVVGVFR----Y--   73 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~-~~~i~~~~~----~--   73 (105)
                      ++..+++.+.+ +.++|++|||+|. ..+..++++++++|+++.+|...+. ..++...+..+ ++++.+...    .  
T Consensus       195 ~~~~~~~~~~~~~~~~D~vi~~~g~-~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  273 (327)
T 1qor_A          195 EDLVERLKEITGGKKVRVVYDSVGR-DTWERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITTR  273 (327)
T ss_dssp             SCHHHHHHHHTTTCCEEEEEECSCG-GGHHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCSH
T ss_pred             ccHHHHHHHHhCCCCceEEEECCch-HHHHHHHHHhcCCCEEEEEecCCCCCCccCHHHHhhccceEEEccchhhhcCCH
Confidence            34567777777 4589999999995 4599999999999999999976542 45666677777 888875432    1  


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCcee--eeeeCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVT--HRFGFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~--~~~~l~~~  104 (105)
                         .+.++++++++++|++  ++.++  ++|||+++
T Consensus       274 ~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~~l~~~  307 (327)
T 1qor_A          274 EELTEASNELFSLIASGVI--KVDVAEQQKYPLKDA  307 (327)
T ss_dssp             HHHHHHHHHHHHHHHTTSS--CCCCCGGGEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHCCCc--ccccccCcEEcHHHH
Confidence               3457899999999999  55788  89999985

>4dvj_A Putative zinc-dependent alcohol dehydrogenase Pro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.99A {Rhizobium etli}

Probab=99.41  E-value=2.4e-13  Score=89.81  Aligned_cols=96  Identities=9%  Similarity=0.134  Sum_probs=76.7

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc----------
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----------   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----------   73 (105)
                      ++.+.+++..++++|++|||+|++..++.++++++++|+++.+|.+   ..++...+..+++++.++..+          
T Consensus       227 ~~~~~v~~~~~~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~g~~---~~~~~~~~~~k~~~i~~~~~~~~~~~~~~~~  303 (363)
T 4dvj_A          227 PLAAEVAALGLGAPAFVFSTTHTDKHAAEIADLIAPQGRFCLIDDP---SAFDIMLFKRKAVSIHHELMFTRPMFGTPDM  303 (363)
T ss_dssp             CHHHHHHTTCSCCEEEEEECSCHHHHHHHHHHHSCTTCEEEECSCC---SSCCGGGGTTTTCEEEECCTTHHHHHTCTTT
T ss_pred             CHHHHHHHhcCCCceEEEECCCchhhHHHHHHHhcCCCEEEEECCC---CccchHHHhhccceEEEEEeeccccccCcch
Confidence            4566777776679999999999987799999999999999999743   356677788899999987643          


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCCceeeee---eCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKPLVTHRF---GFSQK  104 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~~i~~~~---~l~~~  104 (105)
                         .+.++++++++++|++  ++.++++|   ||+++
T Consensus       304 ~~~~~~~~~~~~l~~~g~l--~~~i~~~~~~~~l~~~  338 (363)
T 4dvj_A          304 SEQGRLLNDVSRLVDEGRL--RTTLTNRLSPINAANL  338 (363)
T ss_dssp             HHHHHHHHHHHHHHHHTSS--CCCEEEEECSCSHHHH
T ss_pred             hhHHHHHHHHHHHHHCCCe--eccccceecCCCHHHH
Confidence               1347889999999999  56777766   77764

>3gms_A Putative NADPH:quinone reductase; structural genomics, putative quinone oxidoreductase, unknown function, PSI-2; 1.76A {Bacillus thuringiensis}

Probab=99.40  E-value=2.4e-14  Score=93.65  Aligned_cols=99  Identities=13%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             hHHHHHHHHHcC-CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhh-hcCeEEEEeec--------
Q 040104            3 AEEVEKIDKAMG-TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA-AREVDVVGVFR--------   72 (105)
Q Consensus         3 ~~~~~~~~~~~~-~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~-~~~~~i~~~~~--------   72 (105)
                      +++.+.+++.++ .++|++|||+|++. ...++++++++|+++.+|...+ ..+++..+. ..++.+.....        
T Consensus       199 ~~~~~~~~~~~~~~g~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  276 (340)
T 3gms_A          199 APLYETVMELTNGIGADAAIDSIGGPD-GNELAFSLRPNGHFLTIGLLSG-IQVNWAEIVTKAKVHANIFHLRHWNDEVS  276 (340)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTS-CCCCHHHHHHTSCCEEEECCHHHHHHHSC
T ss_pred             ccHHHHHHHHhCCCCCcEEEECCCChh-HHHHHHHhcCCCEEEEEeecCC-CCCCHHHhhhcccceEEEEEehhhhhhcC
Confidence            456778888884 59999999999987 6777899999999999997653 234443333 24445444321        


Q ss_pred             --c-CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           73 --Y-KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        73 --~-~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                        . +..++++++++++|++++.. ++++|||+++
T Consensus       277 ~~~~~~~~~~~~~l~~~g~l~~~~-i~~~~~l~~~  310 (340)
T 3gms_A          277 PYKWQETFRHLIRLVENEQLRFMK-VHSTYELADV  310 (340)
T ss_dssp             HHHHHHHHHHHHHHHHTTSSCCCC-EEEEEEGGGH
T ss_pred             HHHHHHHHHHHHHHHHcCCCcccc-ccEEEeHHHH
Confidence              1 46789999999999997654 7889999985

>1uuf_A YAHK, zinc-type alcohol dehydrogenase-like protein YAHK; oxidoreductase, zinc binding, oxydoreductase, metal-binding; 1.76A {Escherichia coli} SCOP: b.35.1.2 c.2.1.1

Probab=99.38  E-value=1.2e-13  Score=91.42  Aligned_cols=87  Identities=11%  Similarity=0.081  Sum_probs=70.5

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~~~   92 (105)
                      +++|++||++|.+..++.++++++++|+++.+|....+. .++...++.+++++.|++.+ .++++++++++++|+++  
T Consensus       256 ~g~Dvvid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~i~--  333 (369)
T 1uuf_A          256 KSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGIV--  333 (369)
T ss_dssp             TCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTCC--
T ss_pred             cCCCEEEECCCCHHHHHHHHHHhccCCEEEEeccCCCCccccCHHHHHhCCcEEEEeecCCHHHHHHHHHHHHhCCCC--
Confidence            589999999998866999999999999999999865444 56666778899999998776 67899999999999994  


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                      +.++ +|||+++
T Consensus       334 ~~i~-~~~l~~~  344 (369)
T 1uuf_A          334 ADIE-MIRADQI  344 (369)
T ss_dssp             CCEE-EECGGGH
T ss_pred             cceE-EEcHHHH
Confidence            4565 7999985

>1piw_A Hypothetical zinc-type alcohol dehydrogenase- like protein in PRE5-FET4 intergenic...; ADH topology, NADP(H)dependent, oxidoreductase; HET: NAP; 3.00A {Saccharomyces cerevisiae} SCOP: b.35.1.2 c.2.1.1 PDB: 1ps0_A* 1q1n_A

Probab=99.37  E-value=9.9e-14  Score=91.43  Aligned_cols=85  Identities=15%  Similarity=0.224  Sum_probs=73.1

Q ss_pred             CCCcEEEEccCC--hHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCCC
Q 040104           15 TGIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKID   90 (105)
Q Consensus        15 ~g~d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i~   90 (105)
                      +++|++||++|+  +..+..++++++++|+++.+|.... . .++...++.+++++.|++.+ ..+++++++++++|++ 
T Consensus       242 ~~~D~vid~~g~~~~~~~~~~~~~l~~~G~iv~~g~~~~-~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~l~~~g~l-  319 (360)
T 1piw_A          242 DTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQ-HEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDI-  319 (360)
T ss_dssp             SCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCS-SCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTTC-
T ss_pred             cCCCEEEECCCCCcHHHHHHHHHHhcCCCEEEEecCCCC-ccccCHHHHHhCCeEEEEEecCCHHHHHHHHHHHHhCCC-
Confidence            489999999998  5558999999999999999998655 4 56666778899999998776 6789999999999999 


Q ss_pred             CCCceeeeeeCCC
Q 040104           91 IKPLVTHRFGFSQ  103 (105)
Q Consensus        91 ~~~~i~~~~~l~~  103 (105)
                       ++.+ ++|||++
T Consensus       320 -~~~i-~~~~l~~  330 (360)
T 1piw_A          320 -KIWV-ETLPVGE  330 (360)
T ss_dssp             -CCCE-EEEESSH
T ss_pred             -cceE-EEEeccH
Confidence             4557 7999998

>1zsy_A Mitochondrial 2-enoyl thioester reductase; medium-chain dehydrogenase/reductase, oxidoreductase, 2-ENOY thioester reductase; 1.75A {Homo sapiens} PDB: 2vcy_A

Probab=99.36  E-value=4.9e-13  Score=88.01  Aligned_cols=93  Identities=11%  Similarity=0.210  Sum_probs=72.7

Q ss_pred             HHHHcCC--CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc-----------C
Q 040104            9 IDKAMGT--GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY-----------K   74 (105)
Q Consensus         9 ~~~~~~~--g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~-----------~   74 (105)
                      +++.+++  ++|++|||+|++. ...++++++++|+++.+|... .+..++...+..+++++.|++..           +
T Consensus       231 ~~~~~~~~~~~Dvvid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~  309 (357)
T 1zsy_A          231 MKNFFKDMPQPRLALNCVGGKS-STELLRQLARGGTMVTYGGMAKQPVVASVSLLIFKDLKLRGFWLSQWKKDHSPDQFK  309 (357)
T ss_dssp             GGGTTSSSCCCSEEEESSCHHH-HHHHHTTSCTTCEEEECCCCTTCCBCCCHHHHHHSCCEEEECCHHHHHHHSCHHHHH
T ss_pred             HHHHHhCCCCceEEEECCCcHH-HHHHHHhhCCCCEEEEEecCCCCCCCCCHHHHHhcCceEEEEEcchhcccCCHHHHH
Confidence            4444532  6999999999887 678999999999999998643 34556666778899999998642           2


Q ss_pred             CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ..++++++++++|++++  .+.++|||+++
T Consensus       310 ~~~~~~~~l~~~g~l~~--~~~~~~~l~~~  337 (357)
T 1zsy_A          310 ELILTLCDLIRRGQLTA--PACSQVPLQDY  337 (357)
T ss_dssp             HHHHHHHHHHHTTSSCC--CCEEEEEGGGH
T ss_pred             HHHHHHHHHHHcCCCcC--ccceEEcHHHH
Confidence            35788999999999954  46689999985

>2c0c_A Zinc binding alcohol dehydrogenase, domain containing 2; oxidoreductase, quinone oxidoreductase, medium-chain dehydrogenase/reductase; HET: NAP; 1.45A {Homo sapiens} PDB: 2x1h_A* 2x7h_A* 2wek_A*

Probab=99.36  E-value=4.9e-13  Score=88.22  Aligned_cols=100  Identities=17%  Similarity=0.199  Sum_probs=75.1

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC---c---cc---c-chhhhhcCeEEEEeecc
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE---M---TV---P-LTPAAAREVDVVGVFRY   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~---~---~~---~-~~~~~~~~~~i~~~~~~   73 (105)
                      ++.+.+++.+++++|++|||+|... +..++++++++|+++.+|.....   .   .+   . ...++.+++++.|++..
T Consensus       219 ~~~~~~~~~~~~g~D~vid~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  297 (362)
T 2c0c_A          219 PVGTVLKQEYPEGVDVVYESVGGAM-FDLAVDALATKGRLIVIGFISGYQTPTGLSPVKAGTLPAKLLKKSASVQGFFLN  297 (362)
T ss_dssp             CHHHHHHHHCTTCEEEEEECSCTHH-HHHHHHHEEEEEEEEECCCGGGTTSSSCCCCCCCTTHHHHHHHHTCEEEECCGG
T ss_pred             hHHHHHHHhcCCCCCEEEECCCHHH-HHHHHHHHhcCCEEEEEeCCCCcCcccccccccccccHHHHHhhcceEEEEEhh
Confidence            4556777777678999999999864 99999999999999999974321   1   01   1 13567899999998753


Q ss_pred             ------CCCHHHHHHHHHcCCCCCCCc------eeeeeeCCCC
Q 040104           74 ------KNTWPLCLEFLRSGKIDIKPL------VTHRFGFSQK  104 (105)
Q Consensus        74 ------~~~~~~~~~~v~~g~i~~~~~------i~~~~~l~~~  104 (105)
                            ++.++++++++++|++++...      +++.|||+++
T Consensus       298 ~~~~~~~~~~~~~~~l~~~g~l~~~~~~~~~~~~~~~~~l~~~  340 (362)
T 2c0c_A          298 HYLSKYQAAMSHLLEMCVSGDLVCEVDLGDLSPEGRFTGLESI  340 (362)
T ss_dssp             GCGGGHHHHHHHHHHHHHTTCSCCCEECSTTSTTCSCBSTTHH
T ss_pred             hhhhhHHHHHHHHHHHHHCCCeEeeeccccccccccccCHHHH
Confidence                  346899999999999965432      3456899875

>2zb4_A Prostaglandin reductase 2; rossmann fold, alternative splicing, cytoplasm, NADP, oxidoreductase; HET: NAP 5OP; 1.63A {Homo sapiens} PDB: 2zb7_A* 2zb8_A* 2w98_A* 2vna_A* 2w4q_A* 1vj1_A 2zb3_A*

Probab=99.34  E-value=1.2e-12  Score=86.06  Aligned_cols=98  Identities=21%  Similarity=0.296  Sum_probs=75.8

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-Cccccc---------hhhhhcCeEEEEeecc
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPL---------TPAAAREVDVVGVFRY   73 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~---------~~~~~~~~~i~~~~~~   73 (105)
                      ++.+.+++.+++++|++|||+|+. .+..++++++++|+++.+|.... ...++.         ..++.+++++.|++..
T Consensus       218 ~~~~~~~~~~~~~~d~vi~~~G~~-~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~  296 (357)
T 2zb4_A          218 NVAEQLRESCPAGVDVYFDNVGGN-ISDTVISQMNENSHIILCGQISQYNKDVPYPPPLSPAIEAIQKERNITRERFLVL  296 (357)
T ss_dssp             CHHHHHHHHCTTCEEEEEESCCHH-HHHHHHHTEEEEEEEEECCCGGGTTSCCCSSCCCCHHHHHHHHHHTCEEEECCGG
T ss_pred             HHHHHHHHhcCCCCCEEEECCCHH-HHHHHHHHhccCcEEEEECCccccccCccccccchhhhhhhhhcceeEEEEeehh
Confidence            456777877755899999999975 49999999999999999997542 122332         3567899999998653


Q ss_pred             ------CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 ------KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 ------~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                            .+.++++++++++|++++.  +..+|||+++
T Consensus       297 ~~~~~~~~~~~~~~~l~~~g~l~~~--~~~~~~l~~~  331 (357)
T 2zb4_A          297 NYKDKFEPGILQLSQWFKEGKLKIK--ETVINGLENM  331 (357)
T ss_dssp             GGGGGHHHHHHHHHHHHHTTCCCCC--EEEEECGGGH
T ss_pred             hhhHHHHHHHHHHHHHHHcCCCcCc--cceecCHHHH
Confidence                  3568999999999999654  4456999875

>1tt7_A YHFP; alcohol dehydrogenase, Zn-dependent, NAD, structural genomics, protein structure initiative, PSI; 2.70A {Bacillus subtilis} SCOP: b.35.1.2 c.2.1.1 PDB: 1y9e_A*

Probab=99.34  E-value=1.2e-13  Score=89.90  Aligned_cols=89  Identities=18%  Similarity=0.300  Sum_probs=70.6

Q ss_pred             cCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------CCCHHHHHHHH
Q 040104           13 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------KNTWPLCLEFL   84 (105)
Q Consensus        13 ~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~v   84 (105)
                      +++++|++|||+|++. +..++++++++|+++.+|...+ +..++...++.+++++.|+...       .+.++++++++
T Consensus       214 ~~~~~d~vid~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~~~~~  292 (330)
T 1tt7_A          214 SKQQWQGAVDPVGGKQ-LASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMSSDL  292 (330)
T ss_dssp             CCCCEEEEEESCCTHH-HHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTTTTS
T ss_pred             hcCCccEEEECCcHHH-HHHHHHhhcCCCEEEEEecCCCCccCcchHHHHhcCeEEEEEeccccCHHHHHHHHHHHHHHH
Confidence            3458999999999964 9999999999999999997653 3456666778899999997432       12456667777


Q ss_pred             HcCCCCCCCceeeeeeCCCC
Q 040104           85 RSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        85 ~~g~i~~~~~i~~~~~l~~~  104 (105)
                      .+|++  +++++++|||+++
T Consensus       293 ~~g~l--~~~i~~~~~l~~~  310 (330)
T 1tt7_A          293 KPDQL--LTIVDREVSLEET  310 (330)
T ss_dssp             CCSCS--TTSEEEEECSTTH
T ss_pred             hcCCc--ccccceEEcHHHH
Confidence            78888  6788999999985

>3slk_A Polyketide synthase extender module 2; rossmann fold, NADPH, oxidoreductase; HET: NDP; 3.00A {Saccharopolyspora spinosa}

Probab=99.32  E-value=1.7e-12  Score=93.03  Aligned_cols=98  Identities=16%  Similarity=0.183  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-------C
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-------K   74 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-------~   74 (105)
                      .++.+.+++.| |+|+|+|||++|++. +..++++++++|+++.+|.........+. ...+++++.+....       .
T Consensus       398 ~~~~~~i~~~t~g~GvDvVld~~gg~~-~~~~l~~l~~~Gr~v~iG~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  475 (795)
T 3slk_A          398 CDFEQQFLGATGGRGVDVVLNSLAGEF-ADASLRMLPRGGRFLELGKTDVRDPVEVA-DAHPGVSYQAFDTVEAGPQRIG  475 (795)
T ss_dssp             STHHHHHHHHSCSSCCSEEEECCCTTT-THHHHTSCTTCEEEEECCSTTCCCHHHHH-HHSSSEEEEECCGGGGHHHHHH
T ss_pred             hhHHHHHHHHcCCCCeEEEEECCCcHH-HHHHHHHhcCCCEEEEeccccccCccccc-ccCCCCEEEEeeccccCHHHHH
Confidence            45778899999 569999999999876 89999999999999999975432222221 23467777665331       4


Q ss_pred             CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.++++++++++|++  +++++++|||+++
T Consensus       476 ~~l~~~~~l~~~g~l--~p~~~~~~~l~~~  503 (795)
T 3slk_A          476 EMLHELVELFEGRVL--EPLPVTAWDVRQA  503 (795)
T ss_dssp             HHHHHHHHHHHTTSC--CCCCEEEEEGGGH
T ss_pred             HHHHHHHHHHHcCCc--CCCcceeEcHHHH
Confidence            578999999999999  5678889999985

>1v3u_A Leukotriene B4 12- hydroxydehydrogenase/prostaglandin 15-keto reductase; rossmann fold, riken structural genomics/proteomics initiative, RSGI; 2.00A {Cavia porcellus} SCOP: b.35.1.2 c.2.1.1 PDB: 1v3t_A 1v3v_A* 2dm6_A* 1zsv_A 2y05_A*

Probab=99.31  E-value=2.4e-12  Score=83.92  Aligned_cols=99  Identities=21%  Similarity=0.263  Sum_probs=75.8

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC------Cc-cccchhhhhcCeEEEEeecc--
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH------EM-TVPLTPAAAREVDVVGVFRY--   73 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~------~~-~~~~~~~~~~~~~i~~~~~~--   73 (105)
                      +++.+.+++.+++++|++||++|.+. +..++++++++|+++.+|....      +. ..+...++.+++++.|+..+  
T Consensus       201 ~~~~~~~~~~~~~~~d~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~  279 (333)
T 1v3u_A          201 NSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYRW  279 (333)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEECCCCC-------CCBCCCHHHHHHTTCEEEECCGGGC
T ss_pred             HHHHHHHHHHhCCCCeEEEECCChHH-HHHHHHHHhcCCEEEEEeccccccCCCCCCCCcCHHHHhhcCceEEEEehhhc
Confidence            34566777777668999999999875 9999999999999999997542      11 13455678899999998754  


Q ss_pred             -----CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           74 -----KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        74 -----~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                           ++.++++++++++|++++..  ..++||+++
T Consensus       280 ~~~~~~~~~~~~~~l~~~g~l~~~~--~~~~~l~~~  313 (333)
T 1v3u_A          280 QGDVREKALRDLMKWVLEGKIQYHE--HVTKGFENM  313 (333)
T ss_dssp             CTHHHHHHHHHHHHHHHTTSSCCCE--EEEECGGGH
T ss_pred             chHHHHHHHHHHHHHHHCCCccCcc--ccccCHHHH
Confidence                 24577899999999996654  345799875

>3nx4_A Putative oxidoreductase; csgid, structural genomics, center for struc genomics of infectious diseases, PSI, protein structure INI; HET: MSE NAP; 1.90A {Salmonella enterica subsp} PDB: 1o89_A 1o8c_A*

Probab=99.30  E-value=8.7e-14  Score=90.37  Aligned_cols=89  Identities=16%  Similarity=0.202  Sum_probs=73.4

Q ss_pred             HcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------CCCHHHHHHH
Q 040104           12 AMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------KNTWPLCLEF   83 (105)
Q Consensus        12 ~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~~~~   83 (105)
                      .+++++|++|||+|++. ++.++++++++|+++.+|.... ..+++...++.+++++.|+...       .+.+++++++
T Consensus       207 ~~~~~~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~l  285 (324)
T 3nx4_A          207 LEKQLWAGAIDTVGDKV-LAKVLAQMNYGGCVAACGLAGGFALPTTVMPFILRNVRLQGVDSVMTPPARRAEAWARLVKD  285 (324)
T ss_dssp             SCCCCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTCSEEEEESHHHHHHCCEEEECCSTTCCHHHHHHHHHHHHHH
T ss_pred             hcCCCccEEEECCCcHH-HHHHHHHHhcCCEEEEEecCCCCCCCCCHHHHhhcCeEEEEEeccccChHHHHHHHHHHHHH
Confidence            34568999999999874 9999999999999999997654 3456777788999999998653       2467889999


Q ss_pred             HHcCCCCCCCceeeeeeCCCC
Q 040104           84 LRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        84 v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +++|++  +++ +++|||+++
T Consensus       286 ~~~g~l--~~~-~~~~~l~~~  303 (324)
T 3nx4_A          286 LPESFY--AQA-ATEITLADA  303 (324)
T ss_dssp             SCHHHH--HHH-EEEEEGGGH
T ss_pred             HHcCCC--CCC-ceeEeHHHH
Confidence            999998  455 889999985

>3tqh_A Quinone oxidoreductase; HET: NDP; 2.44A {Coxiella burnetii}

Probab=99.29  E-value=5.3e-13  Score=86.73  Aligned_cols=85  Identities=13%  Similarity=0.154  Sum_probs=69.0

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc--CCCHHHHHHHHHcCCCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY--KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~~~~~~v~~g~i~~~   92 (105)
                      +++|++|||+|++. +..++++++++|+++.+|......  ....+..+++++.+++..  .++++++++++++|++  +
T Consensus       214 ~g~D~v~d~~g~~~-~~~~~~~l~~~G~iv~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~l--~  288 (321)
T 3tqh_A          214 TPVDAVIDLVGGDV-GIQSIDCLKETGCIVSVPTITAGR--VIEVAKQKHRRAFGLLKQFNIEELHYLGKLVSEDKL--R  288 (321)
T ss_dssp             SCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCSTTHHH--HHHHHHHTTCEEECCCCCCCHHHHHHHHHHHHTTSS--C
T ss_pred             cCCCEEEECCCcHH-HHHHHHhccCCCEEEEeCCCCchh--hhhhhhhcceEEEEEecCCCHHHHHHHHHHHHCCCc--c
Confidence            47999999999988 699999999999999998644221  223456788999886543  5689999999999999  5


Q ss_pred             CceeeeeeCCCC
Q 040104           93 PLVTHRFGFSQK  104 (105)
Q Consensus        93 ~~i~~~~~l~~~  104 (105)
                      +.++++|||+++
T Consensus       289 ~~i~~~~~l~~~  300 (321)
T 3tqh_A          289 IEISRIFQLSEA  300 (321)
T ss_dssp             CCEEEEECGGGH
T ss_pred             cccccEEcHHHH
Confidence            579999999985

>1iz0_A Quinone oxidoreductase; APO-enzyme, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.30A {Thermus thermophilus} SCOP: b.35.1.2 c.2.1.1 PDB: 1iyz_A 2cf2_D

Probab=99.27  E-value=1.7e-12  Score=83.63  Aligned_cols=86  Identities=19%  Similarity=0.333  Sum_probs=68.5

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-----CCCHHHHHH---HHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-----KNTWPLCLE---FLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-----~~~~~~~~~---~v~   85 (105)
                      +++|++|| +|+.. +..++++++++|+++.+|..... ..+++..++.+++++.|+...     +..++++++   +++
T Consensus       188 ~~~d~vid-~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~  265 (302)
T 1iz0_A          188 GGLDLVLE-VRGKE-VEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLTPLLREGALVEEALGFLLPRL  265 (302)
T ss_dssp             TSEEEEEE-CSCTT-HHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHHHHTTCHHHHHHHHHHHGGGB
T ss_pred             cCceEEEE-CCHHH-HHHHHHhhccCCEEEEEeCCCCCCCCcCHHHHHhCCCeEEEEeccchhhhHHHHHHHHhhhHHHH
Confidence            58999999 99854 99999999999999999976532 346666778899999998752     457899999   999


Q ss_pred             cCCCCCCCceeeeeeCCCC
Q 040104           86 SGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        86 ~g~i~~~~~i~~~~~l~~~  104 (105)
                      +|++  +++++++|||+++
T Consensus       266 ~g~l--~~~i~~~~~l~~~  282 (302)
T 1iz0_A          266 GREL--RPVVGPVFPFAEA  282 (302)
T ss_dssp             TTTB--CCCEEEEEEGGGH
T ss_pred             cCCc--ccccceEEcHHHH
Confidence            9998  6789999999985

>3goh_A Alcohol dehydrogenase, zinc-containing; NP_718042.1, alcohol dehydrogenase superfamily protein, ALCO dehydrogenase groes-like domain; 1.55A {Shewanella oneidensis}

Probab=99.20  E-value=3.7e-13  Score=87.23  Aligned_cols=88  Identities=14%  Similarity=0.176  Sum_probs=55.6

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccc--hhhhhcCeEEEEeecc---------CCCHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPL--TPAAAREVDVVGVFRY---------KNTWPLCLE   82 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~--~~~~~~~~~i~~~~~~---------~~~~~~~~~   82 (105)
                      ++++|++|||+|++. +..++++++++|+++.+|.......++.  ..+.++++++.+++.+         .+.++++++
T Consensus       197 ~~g~Dvv~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  275 (315)
T 3goh_A          197 TQKYFAIFDAVNSQN-AAALVPSLKANGHIICIQDRIPAPIDPAFTRTISYHEIALGALHDFGDRQDWQILMQQGEALLT  275 (315)
T ss_dssp             CSCEEEEECC--------TTGGGEEEEEEEEEECCC----------CCSEEEEECGGGHHHHCCHHHHHHHHHHHHHHHH
T ss_pred             CCCccEEEECCCchh-HHHHHHHhcCCCEEEEEeCCCCccccchhhhcceeeEEEeecccccCChhHHHHHHHHHHHHHH
Confidence            578999999999987 6899999999999999986443222221  1223344444444332         124688999


Q ss_pred             HHHcCCCCCCCceeeeeeCCCC
Q 040104           83 FLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        83 ~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++|++  +++++++|||+++
T Consensus       276 l~~~g~l--~~~i~~~~~l~~~  295 (315)
T 3goh_A          276 LIAQGKM--EIAAPDIFRFEQM  295 (315)
T ss_dssp             HHHTTSS--CCCCCEEEEGGGH
T ss_pred             HHHCCCc--ccccceEecHHHH
Confidence            9999998  6789999999985

>1xa0_A Putative NADPH dependent oxidoreductases; structural genomics, protein structure initiative, MCSG; HET: DTY; 2.80A {Geobacillus stearothermophilus} SCOP: b.35.1.2 c.2.1.1

Probab=99.19  E-value=2.5e-12  Score=83.69  Aligned_cols=91  Identities=20%  Similarity=0.305  Sum_probs=67.0

Q ss_pred             HHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc-------CCCHHHH
Q 040104            9 IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY-------KNTWPLC   80 (105)
Q Consensus         9 ~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~-------~~~~~~~   80 (105)
                      +++.+++++|++|||+|++. +..++++++++|+++.+|...+ ...+++..++.+++++.|+...       .+.++++
T Consensus       209 ~~~~~~~~~d~vid~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~i~g~~~~~~~~~~~~~~~~~~  287 (328)
T 1xa0_A          209 IRPLDKQRWAAAVDPVGGRT-LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERL  287 (328)
T ss_dssp             ---CCSCCEEEEEECSTTTT-HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHH
T ss_pred             HHHhcCCcccEEEECCcHHH-HHHHHHhhccCCEEEEEeecCCCCCCCchhhhhhcCceEEEEecccCCHHHHHHHHHHH
Confidence            44445568999999999965 9999999999999999997653 3456666778899999997432       1235566


Q ss_pred             HHHHHcCCCCCCCceeeeeeCCCC
Q 040104           81 LEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        81 ~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++++.+| +  ++ ++++|||+++
T Consensus       288 ~~~~~~g-l--~~-~~~~~~l~~~  307 (328)
T 1xa0_A          288 AGDLKPD-L--ER-IAQEISLAEL  307 (328)
T ss_dssp             HTTTCCC-H--HH-HEEEEEGGGH
T ss_pred             HHHHHcC-C--ce-eeeEeCHHHH
Confidence            6666666 6  44 4689999985

>3iup_A Putative NADPH:quinone oxidoreductase; YP_296108.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE NDP; 1.70A {Ralstonia eutropha}

Probab=99.09  E-value=9.1e-12  Score=82.64  Aligned_cols=98  Identities=13%  Similarity=0.187  Sum_probs=70.1

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhh-----cC-----------CEEEEEcCCCCCccccchhhhhcCe
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATR-----AG-----------GKVCLVGMGHHEMTVPLTPAAAREV   65 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~-----~~-----------G~~v~~g~~~~~~~~~~~~~~~~~~   65 (105)
                      +++.+++++.+ +.|+|++|||+|++..+..++++++     ++           |+++.+|... ..++++..++.+++
T Consensus       226 ~~~~~~v~~~t~~~g~d~v~d~~g~~~~~~~~~~~l~~~~~r~~G~~~~~G~~~~g~iv~~G~~~-~~~~~~~~~~~~~~  304 (379)
T 3iup_A          226 PTFMQDLTEALVSTGATIAFDATGGGKLGGQILTCMEAALNKSAREYSRYGSTTHKQVYLYGGLD-TSPTEFNRNFGMAW  304 (379)
T ss_dssp             TTHHHHHHHHHHHHCCCEEEESCEEESHHHHHHHHHHHHHHTTCCSCCTTCCCSCEEEEECCCSE-EEEEEECCCSCSCE
T ss_pred             hHHHHHHHHHhcCCCceEEEECCCchhhHHHHHHhcchhhhccccceeecccccCceEEEecCCC-CCccccccccccce
Confidence            46778888888 4599999999999876788888886     44           5666655432 12344455677899


Q ss_pred             EEEEeecc-------C----CCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           66 DVVGVFRY-------K----NTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        66 ~i~~~~~~-------~----~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ++.|++..       .    +.++++++++.+ ++  +++++++|||+|+
T Consensus       305 ~i~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~l--~~~i~~~~~l~~~  351 (379)
T 3iup_A          305 GMGGWLLFPFLQKIGRERANALKQRVVAELKT-TF--ASHYSKEISLAEV  351 (379)
T ss_dssp             EEEECCHHHHHHHHCHHHHHHHHHHHHHTTTT-TT--CCCCSEEEEHHHH
T ss_pred             EEEEEEeeeecccCCHHHHHHHHHHHHHHHhc-cC--CCcceEEecHHHh
Confidence            99997643       1    234666677766 45  7789999999875

>1pqw_A Polyketide synthase; rossmann fold, dimer, structural genomics, PSI, protein STRU initiative; 2.66A {Mycobacterium tuberculosis} SCOP: c.2.1.1

Probab=99.07  E-value=1.8e-10  Score=69.92  Aligned_cols=87  Identities=17%  Similarity=0.268  Sum_probs=64.6

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeec------c-
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFR------Y-   73 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~------~-   73 (105)
                      +..+.+.+.+ ++++|++||++|... +..++++++++|+++.+|....  ...+++. .+.+++++.+...      . 
T Consensus        94 ~~~~~~~~~~~~~~~D~vi~~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  171 (198)
T 1pqw_A           94 DFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGLA-ALAKSASFSVVDLDLNLKLQP  171 (198)
T ss_dssp             THHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEGG-GGTTTCEEEECCHHHHHHHCH
T ss_pred             HHHHHHHHHhCCCCCeEEEECCchHH-HHHHHHHhccCCEEEEEcCCCCcCcCcCChh-HhcCCcEEEEEehHHhhccCH
Confidence            4556777777 458999999998755 9999999999999999997542  2234333 3467888876421      1 


Q ss_pred             ---CCCHHHHHHHHHcCCCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIK   92 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~   92 (105)
                         .+.++++++++++|++++.
T Consensus       172 ~~~~~~~~~~~~l~~~g~l~~~  193 (198)
T 1pqw_A          172 ARYRQLLQHILQHVADGKLEVL  193 (198)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHHHHHHHcCCccCC
Confidence               4678999999999999653

>2vn8_A Reticulon-4-interacting protein 1; mitochondrion, transit peptide, receptor inhibitor; HET: NDP CIT; 2.1A {Homo sapiens}

Probab=99.03  E-value=5.8e-11  Score=78.58  Aligned_cols=96  Identities=18%  Similarity=0.218  Sum_probs=67.0

Q ss_pred             HHHHHHHHcCCCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcCCCCC-c-c--ccc------hhhhh-------cCeE
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGMGHHE-M-T--VPL------TPAAA-------REVD   66 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~~~~~-~-~--~~~------~~~~~-------~~~~   66 (105)
                      +.+++++.  .++|++|||+|++ ..+..++++++++|+++.+|..... . .  +..      ..+..       ++.+
T Consensus       239 ~~~~~~~~--~g~D~vid~~g~~~~~~~~~~~~l~~~G~iv~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  316 (375)
T 2vn8_A          239 VEEQLKSL--KPFDFILDNVGGSTETWAPDFLKKWSGATYVTLVTPFLLNMDRLGIADGMLQTGVTVGSKALKHFWKGVH  316 (375)
T ss_dssp             HHHHHHTS--CCBSEEEESSCTTHHHHGGGGBCSSSCCEEEESCCSHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCE
T ss_pred             HHHHHhhc--CCCCEEEECCCChhhhhHHHHHhhcCCcEEEEeCCCcccccccccccchhheeehhhccccccccccCcc
Confidence            44444442  5899999999998 4568999999999999999964321 0 0  111      01111       4555


Q ss_pred             EEEeecc--CCCHHHHHHHHHcCCCCCCCceeeeeeCCCC
Q 040104           67 VVGVFRY--KNTWPLCLEFLRSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        67 i~~~~~~--~~~~~~~~~~v~~g~i~~~~~i~~~~~l~~~  104 (105)
                      +.+.+..  .+.++++++++++|++  +++++++|||+++
T Consensus       317 ~~~~~~~~~~~~~~~~~~l~~~g~l--~~~i~~~~~l~~~  354 (375)
T 2vn8_A          317 YRWAFFMASGPCLDDIAELVDAGKI--RPVIEQTFPFSKV  354 (375)
T ss_dssp             EEECCCCCCHHHHHHHHHHHHTTSC--CCCEEEEEEGGGH
T ss_pred             eEEEEeCCCHHHHHHHHHHHHCCCc--ccCcCeEECHHHH
Confidence            5544332  3467999999999998  6789999999985

>2vz8_A Fatty acid synthase; transferase, phosphopantetheine, multienzyme, megasynthase, fatty acid synthesis; 3.2A {Sus scrofa} PDB: 2vz9_A*

Probab=98.86  E-value=2.1e-09  Score=84.42  Aligned_cols=99  Identities=15%  Similarity=0.243  Sum_probs=72.0

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC-CccccchhhhhcCeEEEEeecc------C
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH-EMTVPLTPAAAREVDVVGVFRY------K   74 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~-~~~~~~~~~~~~~~~i~~~~~~------~   74 (105)
                      .++.+.+++.+ +.|+|+||||+|+. .+..++++++++|+++.+|.... ........+..+++++.++...      .
T Consensus      1726 ~~~~~~i~~~t~g~GvDvVld~~g~~-~l~~~l~~L~~~Gr~V~iG~~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~ 1804 (2512)
T 2vz8_A         1726 TSFEQHVLRHTAGKGVDLVLNSLAEE-KLQASVRCLAQHGRFLEIGKFDLSNNHALGMAVFLKNVTFHGILLDSLFEEGG 1804 (2512)
T ss_dssp             SHHHHHHHHTTTSCCEEEEEECCCHH-HHHHHHTTEEEEEEEEECCCHHHHTTCEEEGGGGGGCCEEEECCGGGTTSSCC
T ss_pred             HHHHHHHHHhcCCCCceEEEECCCch-HHHHHHHhcCCCcEEEEeecccccccCcccccccccCCcEEEeeHHHHhhhCH
Confidence            35677888888 56999999999865 49999999999999999996431 1111223456788999887542      2


Q ss_pred             CCHHHHHHHH----HcCCCCCCCceeeeeeCCCC
Q 040104           75 NTWPLCLEFL----RSGKIDIKPLVTHRFGFSQK  104 (105)
Q Consensus        75 ~~~~~~~~~v----~~g~i~~~~~i~~~~~l~~~  104 (105)
                      ..++++++++    .+|++  +++++++||++++
T Consensus      1805 ~~~~~~l~~l~~~~~~g~l--~p~i~~~f~l~ei 1836 (2512)
T 2vz8_A         1805 ATWQEVSELLKAGIQEGVV--QPLKCTVFPRTKV 1836 (2512)
T ss_dssp             HHHHHHHHHHHHHHTTTCS--CCCCEEEEESSTH
T ss_pred             HHHHHHHHHHHHHHHcCCc--CCCcceEecHHHH
Confidence            3456666655    46777  6678899999985

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=97.28  E-value=0.00016  Score=47.76  Aligned_cols=72  Identities=14%  Similarity=0.141  Sum_probs=52.4

Q ss_pred             CCcEEEEccCChHH------HHHHHHhhhcCCEEEEEcCCCC-------CccccchhhhhcCeEEEEeecc---------
Q 040104           16 GIDVSFDCAGFNKT------MSTALSATRAGGKVCLVGMGHH-------EMTVPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus        16 g~d~vid~~g~~~~------~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ++|++|+|+|.+..      ....++.++++|+++.+|...+       +.+++...+..+++++.+....         
T Consensus       230 ~~DvVI~~~~~~~~~~~~li~~~~~~~~~~g~~ivdv~~~~gg~~e~~~~~~~~~~~~~~~~v~~~~~~~lp~~~~~~~s  309 (361)
T 1pjc_A          230 EADLLIGAVLVPGRRAPILVPASLVEQMRTGSVIVDVAVDQGGCVETLHPTSHTQPTYEVFGVVHYGVPNMPGAVPWTAT  309 (361)
T ss_dssp             TCSEEEECCCCTTSSCCCCBCHHHHTTSCTTCEEEETTCTTCCSBTTCCCCCSSSCEEEETTEEEECCSCGGGGCHHHHH
T ss_pred             CCCEEEECCCcCCCCCCeecCHHHHhhCCCCCEEEEEecCCCCCCccccCCCCCCCEEEECCEEEEEeCCcchhhHHHHH
Confidence            69999999987652      5678899999999999987542       2345555566788888775421         


Q ss_pred             ----CCCHHHHHHHHHcC
Q 040104           74 ----KNTWPLCLEFLRSG   87 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g   87 (105)
                          ...++.+++++.+|
T Consensus       310 ~~~~~~~~~~l~~l~~~G  327 (361)
T 1pjc_A          310 QALNNSTLPYVVKLANQG  327 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence                23457788888877

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=96.65  E-value=0.00087  Score=44.35  Aligned_cols=72  Identities=18%  Similarity=0.173  Sum_probs=43.4

Q ss_pred             CCcEEEEccCChHH------HHHHHHhhhcCCEEEEEcCCCC-------CccccchhhhhcCeEEEEeecc---------
Q 040104           16 GIDVSFDCAGFNKT------MSTALSATRAGGKVCLVGMGHH-------EMTVPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus        16 g~d~vid~~g~~~~------~~~~~~~l~~~G~~v~~g~~~~-------~~~~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ++|++|+|+|.+..      ....++.++++|+++.+|...+       +.+++...+..+++++.+....         
T Consensus       229 ~~DvVi~~~g~~~~~~~~li~~~~l~~mk~gg~iV~v~~~~gg~~d~~ep~~~~~~~~~~~~v~~~~v~~lp~~~p~~as  308 (369)
T 2eez_A          229 HADLLIGAVLVPGAKAPKLVTRDMLSLMKEGAVIVDVAVDQGGCVETIRPTTHAEPTYVVDGVVHYGVANMPGAVPRTST  308 (369)
T ss_dssp             HCSEEEECCC-------CCSCHHHHTTSCTTCEEEECC-------------------CEETTEEEECCSCSGGGSHHHHH
T ss_pred             CCCEEEECCCCCccccchhHHHHHHHhhcCCCEEEEEecCCCCCCCcccCCCCCCCEEEECCEEEEeeCCcchhcHHHHH
Confidence            68999999997642      5778999999999999987542       2233433445678887765321         


Q ss_pred             ----CCCHHHHHHHHHcC
Q 040104           74 ----KNTWPLCLEFLRSG   87 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g   87 (105)
                          ...++.+++++.+|
T Consensus       309 ~~~~~~~~~~l~~l~~~g  326 (369)
T 2eez_A          309 FALTNQTLPYVLKLAEKG  326 (369)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhcC
Confidence                23467788888776

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=96.48  E-value=0.00041  Score=46.10  Aligned_cols=72  Identities=14%  Similarity=0.164  Sum_probs=49.1

Q ss_pred             CCcEEEEccCChHH------HHHHHHhhhcCCEEEEEcCCC-------CCccccchhhhhcCeEEEEeecc---------
Q 040104           16 GIDVSFDCAGFNKT------MSTALSATRAGGKVCLVGMGH-------HEMTVPLTPAAAREVDVVGVFRY---------   73 (105)
Q Consensus        16 g~d~vid~~g~~~~------~~~~~~~l~~~G~~v~~g~~~-------~~~~~~~~~~~~~~~~i~~~~~~---------   73 (105)
                      ++|++|+|++.+..      ....++.++++|+++.+|...       .+.+++...+..+++.+.++..-         
T Consensus       231 ~aDvVi~~~~~p~~~t~~li~~~~l~~mk~g~~iV~va~~~Ggv~e~~ep~~~~~~~~~~~~v~i~~~phl~~~~~~~as  310 (377)
T 2vhw_A          231 RADLVIGAVLVPGAKAPKLVSNSLVAHMKPGAVLVDIAIDQGGCFEGSRPTTYDHPTFAVHDTLFYCVANMPASVPKTST  310 (377)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHTTSCTTCEEEEGGGGTTCSBTTCCCBCSSSCEEEETTEEEECBTTGGGGSHHHHH
T ss_pred             CCCEEEECCCcCCCCCcceecHHHHhcCCCCcEEEEEecCCCCccccccCCCCCCCEEEECCEEEEecCCcchhhHHHHH
Confidence            58999999987653      578899999999999998643       23344444455677777655432         


Q ss_pred             ----CCCHHHHHHHHHcC
Q 040104           74 ----KNTWPLCLEFLRSG   87 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g   87 (105)
                          ...++.+++++.+|
T Consensus       311 ~~~~~~~~~~~~~l~~~g  328 (377)
T 2vhw_A          311 YALTNATMPYVLELADHG  328 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCC
Confidence                12246666777665

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=96.19  E-value=0.003  Score=42.05  Aligned_cols=81  Identities=11%  Similarity=0.148  Sum_probs=54.9

Q ss_pred             HHHHcCCCCcEEEEcc---CChH--HH-HHHHHhhhcCCEEEEEcCCC-CCcc--ccchhhhhcCeEEEEeeccCC-CHH
Q 040104            9 IDKAMGTGIDVSFDCA---GFNK--TM-STALSATRAGGKVCLVGMGH-HEMT--VPLTPAAAREVDVVGVFRYKN-TWP   78 (105)
Q Consensus         9 ~~~~~~~g~d~vid~~---g~~~--~~-~~~~~~l~~~G~~v~~g~~~-~~~~--~~~~~~~~~~~~i~~~~~~~~-~~~   78 (105)
                      +.+.. .++|++|+|+   |.+.  .+ .+.++.++++++++.+|... +...  .+...+..+++++.++...+. ..+
T Consensus       251 l~~~~-~~aDvVi~~~~~pg~~~~~li~~~~l~~mk~g~vivdva~~~gg~~~~~~~~~~~~~~~v~i~g~~~~p~~~~~  329 (384)
T 1l7d_A          251 VLKEL-VKTDIAITTALIPGKPAPVLITEEMVTKMKPGSVIIDLAVEAGGNCPLSEPGKIVVKHGVKIVGHTNVPSRVAA  329 (384)
T ss_dssp             HHHHH-TTCSEEEECCCCTTSCCCCCSCHHHHTTSCTTCEEEETTGGGTCSSTTCCTTCEEEETTEEEECCSSGGGGGHH
T ss_pred             HHHHh-CCCCEEEECCccCCCCCCeeeCHHHHhcCCCCCEEEEEecCCCCCeecccCCcEEEECCEEEEEeCCCcchhHH
Confidence            44443 3699999999   5322  23 77899999999999999643 3322  233345578899988766533 356


Q ss_pred             HHHHHHHcCCCC
Q 040104           79 LCLEFLRSGKID   90 (105)
Q Consensus        79 ~~~~~v~~g~i~   90 (105)
                      ++.+++.++.++
T Consensus       330 ~a~~l~~~~~~~  341 (384)
T 1l7d_A          330 DASPLFAKNLLN  341 (384)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHhHHH
Confidence            688888877654

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=96.08  E-value=0.0045  Score=41.50  Aligned_cols=72  Identities=13%  Similarity=0.189  Sum_probs=46.7

Q ss_pred             CCcEEEEccCCh-----HHH-HHHHHhhhcCCEEEEEcCCC-CCccccc--h-hhhhcCeEEEEeeccCCCHH-HHHHHH
Q 040104           16 GIDVSFDCAGFN-----KTM-STALSATRAGGKVCLVGMGH-HEMTVPL--T-PAAAREVDVVGVFRYKNTWP-LCLEFL   84 (105)
Q Consensus        16 g~d~vid~~g~~-----~~~-~~~~~~l~~~G~~v~~g~~~-~~~~~~~--~-~~~~~~~~i~~~~~~~~~~~-~~~~~v   84 (105)
                      ++|++|++++.+     ..+ .+.++.++++|+++.+|... +......  . .+..+++++.|+...+..++ ++.+++
T Consensus       255 ~aDvVI~~~~~pg~~ap~li~~~~l~~mk~g~vIVdva~~~Gg~v~~~~~~~p~~~~~gv~i~g~~~~p~~~~~~a~~ll  334 (401)
T 1x13_A          255 EVDIIVTTALIPGKPAPKLITREMVDSMKAGSVIVDLAAQNGGNCEYTVPGEIFTTENGVKVIGYTDLPGRLPTQSSQLY  334 (401)
T ss_dssp             HCSEEEECCCCTTSCCCCCBCHHHHHTSCTTCEEEETTGGGTCSBTTCCTTSEEECTTSCEEECCSCTGGGSHHHHHHHH
T ss_pred             CCCEEEECCccCCCCCCeeeCHHHHhcCCCCcEEEEEcCCCCCCcCcccCCCceEEECCEEEEeeCCCcccCHHHHHHHH
Confidence            689999995332     223 67999999999999999753 3333322  2 14568899998765533343 355555


Q ss_pred             HcC
Q 040104           85 RSG   87 (105)
Q Consensus        85 ~~g   87 (105)
                      .++
T Consensus       335 ~~~  337 (401)
T 1x13_A          335 GTN  337 (401)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            444

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=94.48  E-value=0.019  Score=39.61  Aligned_cols=45  Identities=9%  Similarity=0.148  Sum_probs=34.9

Q ss_pred             CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCCCCccccchhhhh
Q 040104           16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHHEMTVPLTPAAA   62 (105)
Q Consensus        16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~   62 (105)
                      ++|++++|+|....+. ..++.++++|+++.+|....  +++...+..
T Consensus       329 ~aDvVi~atgt~~~i~~~~l~~mk~ggilvnvG~~~~--eId~~aL~~  374 (494)
T 3ce6_A          329 DADIVVTATGNKDIIMLEHIKAMKDHAILGNIGHFDN--EIDMAGLER  374 (494)
T ss_dssp             GCSEEEECSSSSCSBCHHHHHHSCTTCEEEECSSSGG--GBCHHHHHH
T ss_pred             CCCEEEECCCCHHHHHHHHHHhcCCCcEEEEeCCCCC--ccCHHHHHH
Confidence            6899999999887666 79999999999999986432  344444443

>2yvl_A TRMI protein, hypothetical protein; tRNA, methyltransferase, S-adenosylmethionine, structural GE NPPSFA; HET: SAM; 2.20A {Aquifex aeolicus}

Probab=93.87  E-value=0.11  Score=31.71  Aligned_cols=34  Identities=9%  Similarity=-0.043  Sum_probs=29.2

Q ss_pred             CCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +++|+|+...+.+ ..+..+.++|+++|+++....
T Consensus       157 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  191 (248)
T 2yvl_A          157 GIFHAAFVDVREPWHYLEKVHKSLMEGAPVGFLLP  191 (248)
T ss_dssp             TCBSEEEECSSCGGGGHHHHHHHBCTTCEEEEEES
T ss_pred             CcccEEEECCcCHHHHHHHHHHHcCCCCEEEEEeC
Confidence            4699999988876 678999999999999998853

>2nyu_A Putative ribosomal RNA methyltransferase 2; SAM, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.76A {Homo sapiens}

Probab=92.76  E-value=0.15  Score=30.00  Aligned_cols=41  Identities=22%  Similarity=0.374  Sum_probs=28.5

Q ss_pred             HHHHHc-CCCCcEEE-----EccCCh------------HHHHHHHHhhhcCCEEEEEcC
Q 040104            8 KIDKAM-GTGIDVSF-----DCAGFN------------KTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus         8 ~~~~~~-~~g~d~vi-----d~~g~~------------~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      .+.+.. ++.+|+|+     +++|..            ..+..+.++|++||+++..-.
T Consensus        88 ~~~~~~~~~~fD~V~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lv~~~~  146 (196)
T 2nyu_A           88 RILEVLPGRRADVILSDMAPNATGFRDLDHDRLISLCLTLLSVTPDILQPGGTFLCKTW  146 (196)
T ss_dssp             HHHHHSGGGCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             HHHHhcCCCCCcEEEeCCCCCCCCCcccCHHHHHHHHHHHHHHHHHHhcCCCEEEEEec
Confidence            344444 35799999     444442            457789999999999998643

>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}

Probab=92.07  E-value=0.79  Score=29.60  Aligned_cols=71  Identities=15%  Similarity=0.161  Sum_probs=46.7

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hhh----hc-CeEEEEeecc--CCCHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PAA----AR-EVDVVGVFRY--KNTWPLCLEFL   84 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~~----~~-~~~i~~~~~~--~~~~~~~~~~v   84 (105)
                      ..+|+|+.|++.....+.+..+++.| ..+.+.-   +...+..   .+.    .+ ++.+.-.+..  ...+..+.+++
T Consensus        70 ~~~D~V~i~tp~~~h~~~~~~al~~G-~~v~~eK---p~~~~~~~~~~l~~~a~~~~~~~~~~~~~~r~~p~~~~~~~~i  145 (346)
T 3cea_A           70 ENIDAIFIVAPTPFHPEMTIYAMNAG-LNVFCEK---PLGLDFNEVDEMAKVIKSHPNQIFQSGFMRRYDDSYRYAKKIV  145 (346)
T ss_dssp             SCCSEEEECSCGGGHHHHHHHHHHTT-CEEEECS---CCCSCHHHHHHHHHHHHTCTTSCEECCCGGGTCHHHHHHHHHH
T ss_pred             CCCCEEEEeCChHhHHHHHHHHHHCC-CEEEEcC---CCCCCHHHHHHHHHHHHhCCCCeEEEecccccCHHHHHHHHHH
Confidence            47999999999988788888888875 4454432   2223322   221    23 5555433333  55789999999


Q ss_pred             HcCCC
Q 040104           85 RSGKI   89 (105)
Q Consensus        85 ~~g~i   89 (105)
                      .+|.+
T Consensus       146 ~~g~i  150 (346)
T 3cea_A          146 DNGDI  150 (346)
T ss_dssp             HTTTT
T ss_pred             HcCCC
Confidence            99987

>3fpf_A Mtnas, putative uncharacterized protein; thermonicotianamine, nicotianamine, biosynthetic protein; HET: TNA MTA; 1.66A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fpe_A* 3fph_A* 3fpg_A* 3fpj_A* 3o31_A*

Probab=90.56  E-value=0.39  Score=31.07  Aligned_cols=34  Identities=9%  Similarity=0.003  Sum_probs=27.3

Q ss_pred             CCCcEEEEccCCh---HHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+-....+   ..+....+.|+|||++++...
T Consensus       187 ~~FDvV~~~a~~~d~~~~l~el~r~LkPGG~Lvv~~~  223 (298)
T 3fpf_A          187 LEFDVLMVAALAEPKRRVFRNIHRYVDTETRIIYRTY  223 (298)
T ss_dssp             CCCSEEEECTTCSCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCcCEEEECCCccCHHHHHHHHHHHcCCCcEEEEEcC
Confidence            5799999765443   468899999999999998754

>3pym_A GAPDH 3, glyceraldehyde-3-phosphate dehydrogenase 3; NAD(P)-binding rossmann-fold domain, alpha and beta protein, oxidoreductase; HET: NAD; 2.00A {Saccharomyces cerevisiae} PDB: 2i5p_O*

Probab=88.79  E-value=0.69  Score=30.39  Aligned_cols=37  Identities=24%  Similarity=0.399  Sum_probs=30.3

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      .|+|++++|+|.-...+.+-..++.|.+.|++..+..
T Consensus        88 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~  124 (332)
T 3pym_A           88 SNVDIAIDSTGVFKELDTAQKHIDAGAKKVVITAPSS  124 (332)
T ss_dssp             TTCSEEEECSSSSCSHHHHHHHHHTTCSEEEESSCCS
T ss_pred             cCccEEEEecccccCHHHHHHHHHcCCCEEEECCCCC
Confidence            3899999999987778889999998887777766543

>3v1y_O PP38, glyceraldehyde-3-phosphate dehydrogenase, cytosol; rossmann fold; HET: NAD; 1.86A {Oryza sativa japonica group} PDB: 3e5r_O* 3e6a_O

Probab=88.49  E-value=0.6  Score=30.73  Aligned_cols=36  Identities=14%  Similarity=0.260  Sum_probs=30.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|++++|+|.-...+.+-..++.|.+.+++..+..
T Consensus        93 gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps~  128 (337)
T 3v1y_O           93 GAEYVVESTGVFTDKEKAAAHLKGGAKKVVISAPSK  128 (337)
T ss_dssp             TCCEEEECSSSCCSHHHHTHHHHTTCCEEEESSCCS
T ss_pred             CCcEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence            899999999987778888899998887777766543

>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}

Probab=88.38  E-value=0.86  Score=26.07  Aligned_cols=34  Identities=21%  Similarity=0.307  Sum_probs=26.2

Q ss_pred             CCCcEEEEccCC--hHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGF--NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~--~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+...+.  ...+..+.++|+++|+++....
T Consensus        93 ~~~D~i~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  128 (178)
T 3hm2_A           93 DNPDVIFIGGGLTAPGVFAAAWKRLPVGGRLVANAV  128 (178)
T ss_dssp             SCCSEEEECC-TTCTTHHHHHHHTCCTTCEEEEEEC
T ss_pred             CCCCEEEECCcccHHHHHHHHHHhcCCCCEEEEEee
Confidence            579999865433  3368999999999999998754

>1ej0_A FTSJ; methyltransferase, adoMet, adenosyl methionine, heat shock proteins, 23S ribosomal RNA; HET: SAM; 1.50A {Escherichia coli} SCOP: c.66.1.2 PDB: 1eiz_A*

Probab=88.11  E-value=1  Score=25.43  Aligned_cols=35  Identities=11%  Similarity=0.235  Sum_probs=26.4

Q ss_pred             CCCCcEEEE-----ccCC------------hHHHHHHHHhhhcCCEEEEEcC
Q 040104           14 GTGIDVSFD-----CAGF------------NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        14 ~~g~d~vid-----~~g~------------~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      ++.+|+|+.     ..+.            ...+..+.++|+++|+++....
T Consensus        86 ~~~~D~i~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  137 (180)
T 1ej0_A           86 DSKVQVVMSDMAPNMSGTPAVDIPRAMYLVELALEMCRDVLAPGGSFVVKVF  137 (180)
T ss_dssp             TCCEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             CCceeEEEECCCccccCCCccchHHHHHHHHHHHHHHHHHcCCCcEEEEEEe
Confidence            457999997     3333            2557888999999999998654

>1p91_A Ribosomal RNA large subunit methyltransferase A; RLMA, RRMA, 23S rRNA, NESG, structural genomics, PSI, protein structure initiative; HET: SAM; 2.80A {Escherichia coli} SCOP: c.66.1.33

Probab=87.65  E-value=0.25  Score=30.62  Aligned_cols=33  Identities=15%  Similarity=0.059  Sum_probs=26.3

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+. ...+..+....++|++||++++...
T Consensus       147 ~~fD~v~~-~~~~~~l~~~~~~L~pgG~l~~~~~  179 (269)
T 1p91_A          147 TSMDAIIR-IYAPCKAEELARVVKPGGWVITATP  179 (269)
T ss_dssp             TCEEEEEE-ESCCCCHHHHHHHEEEEEEEEEEEE
T ss_pred             CceeEEEE-eCChhhHHHHHHhcCCCcEEEEEEc
Confidence            46899985 4445569999999999999998753

>3njr_A Precorrin-6Y methylase; methyltransferase, decarboxylase, transferase; HET: SAH PG4; 2.70A {Rhodobacter capsulatus}

Probab=86.92  E-value=1.4  Score=26.27  Aligned_cols=34  Identities=9%  Similarity=-0.007  Sum_probs=26.2

Q ss_pred             CCcEEEEccCC-hHHHHHHHHhhhcCCEEEEEcCC
Q 040104           16 GIDVSFDCAGF-NKTMSTALSATRAGGKVCLVGMG   49 (105)
Q Consensus        16 g~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g~~   49 (105)
                      .+|+|+...+. ...+..+.++|+++|+++.....
T Consensus       122 ~~D~v~~~~~~~~~~l~~~~~~LkpgG~lv~~~~~  156 (204)
T 3njr_A          122 LPEAVFIGGGGSQALYDRLWEWLAPGTRIVANAVT  156 (204)
T ss_dssp             CCSEEEECSCCCHHHHHHHHHHSCTTCEEEEEECS
T ss_pred             CCCEEEECCcccHHHHHHHHHhcCCCcEEEEEecC
Confidence            68998865443 32688999999999999987643

>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0

Probab=86.84  E-value=1.1  Score=26.41  Aligned_cols=34  Identities=12%  Similarity=0.173  Sum_probs=26.6

Q ss_pred             CCCcEEEEccC---ChHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAG---FNKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g---~~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      ..+|+|+....   -...+..+.++|+++|+++....
T Consensus       107 ~~~D~i~~~~~~~~~~~~l~~~~~~LkpgG~l~~~~~  143 (204)
T 3e05_A          107 PDPDRVFIGGSGGMLEEIIDAVDRRLKSEGVIVLNAV  143 (204)
T ss_dssp             CCCSEEEESCCTTCHHHHHHHHHHHCCTTCEEEEEEC
T ss_pred             CCCCEEEECCCCcCHHHHHHHHHHhcCCCeEEEEEec
Confidence            46899987654   23468889999999999998754

>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*

Probab=86.77  E-value=2.6  Score=27.46  Aligned_cols=71  Identities=17%  Similarity=0.142  Sum_probs=46.5

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|+......+.+..+++.|-. |.+-   .|...+..   .+    -.+++.+.-.+..  ...+.++.+++.
T Consensus        88 ~~~D~V~i~tp~~~h~~~~~~al~aGk~-Vl~E---KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  163 (350)
T 3rc1_A           88 DDVDAVYVPLPAVLHAEWIDRALRAGKH-VLAE---KPLTTDRPQAERLFAVARERGLLLMENFMFLHHPQHRQVADMLD  163 (350)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHHHTTCE-EEEE---SSSCSSHHHHHHHHHHHHHTTCCEEEECGGGGCTHHHHHHHHHH
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHCCCc-EEEe---CCCCCCHHHHHHHHHHHHHhCCEEEEEecccCCHHHHHHHHHHh
Confidence            4799999999998878888888876644 4442   22222322   22    2344444433332  788999999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       164 ~G~i  167 (350)
T 3rc1_A          164 EGVI  167 (350)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9987

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=86.58  E-value=1.1  Score=29.61  Aligned_cols=36  Identities=14%  Similarity=0.219  Sum_probs=29.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|++++|+|.-...+.+-..++.|.+-+++..+..
T Consensus        94 gvDiVlesTG~f~s~e~a~~hl~aGAkkVVIsaps~  129 (346)
T 3h9e_O           94 GSPYVVESTGVYLSIQAASDHISAGAQRVVISAPSP  129 (346)
T ss_dssp             TSCEEEECSSSCCSHHHHHHHHHTTCSEEEESSCCS
T ss_pred             cccEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence            899999999987778888889998876666665543

>1rm4_O Glyceraldehyde 3-phosphate dehydrogenase A; rossmann fold, GAPDH-NADP complex, oxidoreductase; HET: NDP; 2.00A {Spinacia oleracea} SCOP: c.2.1.3 d.81.1.1 PDB: 1nbo_O* 2hki_A 2pkq_P* 1rm5_O* 1rm3_O* 2pkr_O* 1jn0_O* 3qv1_A* 3k2b_A* 3rvd_A* 2pkq_O*

Probab=86.38  E-value=0.72  Score=30.32  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=29.8

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+||+|+|.....+.+-..++.|.+.+.++.+.
T Consensus        91 gvDiV~eatg~~~s~e~a~~~l~~Gak~V~iSap~  125 (337)
T 1rm4_O           91 GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  125 (337)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCCEEEECCCchhhHHHHHHHHHcCCEEEEECCcc
Confidence            79999999998777888888899888888887653

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=86.09  E-value=0.5  Score=32.18  Aligned_cols=36  Identities=19%  Similarity=0.477  Sum_probs=30.5

Q ss_pred             CCcEEEEccCChHHHH-HHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMS-TALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~-~~~~~l~~~G~~v~~g~~~~   51 (105)
                      ..|+++.|+|....+. +.+..+++++.++.+|....
T Consensus       275 ~ADIVi~atgt~~lI~~e~l~~MK~gailINvgrg~~  311 (435)
T 3gvp_A          275 QVDIVITCTGNKNVVTREHLDRMKNSCIVCNMGHSNT  311 (435)
T ss_dssp             TCSEEEECSSCSCSBCHHHHHHSCTTEEEEECSSTTT
T ss_pred             cCCEEEECCCCcccCCHHHHHhcCCCcEEEEecCCCc
Confidence            6899999988777666 89999999999999986543

>2x5j_O E4PDH, D-erythrose-4-phosphate dehydrogenase; oxidoreductase, hydride transfer, aldehyde dehydrogenase, PY biosynthesis; 2.30A {Escherichia coli} PDB: 2xf8_A* 2x5k_O*

Probab=85.83  E-value=0.88  Score=29.89  Aligned_cols=35  Identities=29%  Similarity=0.453  Sum_probs=27.9

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+||+|+|.....+.+-..++.|.+.+++..+.
T Consensus        92 ~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~a  126 (339)
T 2x5j_O           92 GVDVVLDCTGVYGSREHGEAHIAAGAKKVLFSHPG  126 (339)
T ss_dssp             TCSEEEECSSSCCSHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCCEEEEeccc
Confidence            79999999998777888888888888756665443

>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}

Probab=85.51  E-value=2  Score=27.56  Aligned_cols=71  Identities=14%  Similarity=0.206  Sum_probs=46.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.| .-+.+--   |...+..   .+    -.++..+.-.+..  ...+..+.+++.
T Consensus        62 ~~~D~V~i~tp~~~h~~~~~~al~~g-k~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  137 (331)
T 4hkt_A           62 ADIDAVVICTPTDTHADLIERFARAG-KAIFCEK---PIDLDAERVRACLKVVSDTKAKLMVGFNRRFDPHFMAVRKAID  137 (331)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECS---CSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCchhHHHHHHHHHHcC-CcEEEec---CCCCCHHHHHHHHHHHHHcCCeEEEcccccCCHHHHHHHHHHH
Confidence            47999999999888778888887776 4444432   2222222   22    2244444433332  678899999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       138 ~g~i  141 (331)
T 4hkt_A          138 DGRI  141 (331)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9987

>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}

Probab=85.43  E-value=0.87  Score=28.09  Aligned_cols=34  Identities=21%  Similarity=0.130  Sum_probs=24.7

Q ss_pred             CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+-....   +..++.+.++|++||.++.-..
T Consensus       135 ~~fD~V~~d~~~~~~~~~l~~~~~~LkpGG~lv~~~~  171 (248)
T 3tfw_A          135 PAFDLIFIDADKPNNPHYLRWALRYSRPGTLIIGDNV  171 (248)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEECC
T ss_pred             CCeEEEEECCchHHHHHHHHHHHHhcCCCeEEEEeCC
Confidence            379998832222   3358889999999999987654

>1i9g_A Hypothetical protein RV2118C; mtase, adoMet, crystal, structural genomics, protein structure initiative; HET: SAM; 1.98A {Mycobacterium tuberculosis} SCOP: c.66.1.13

Probab=84.98  E-value=0.82  Score=28.45  Aligned_cols=34  Identities=12%  Similarity=0.009  Sum_probs=27.5

Q ss_pred             CCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+.....+ ..+..+.++|+++|+++++..
T Consensus       170 ~~~D~v~~~~~~~~~~l~~~~~~L~pgG~l~~~~~  204 (280)
T 1i9g_A          170 GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYVA  204 (280)
T ss_dssp             TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CceeEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4689888766665 568899999999999998753

>2pwy_A TRNA (adenine-N(1)-)-methyltransferase; mtase, adoMet, TRMI, tRNA-M1A58; HET: SAH; 1.70A {Thermus thermophilus}

Probab=84.85  E-value=0.8  Score=28.02  Aligned_cols=34  Identities=12%  Similarity=-0.195  Sum_probs=27.8

Q ss_pred             CCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+...+.+ ..+..+.++|+++|+++++..
T Consensus       165 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  199 (258)
T 2pwy_A          165 AAYDGVALDLMEPWKVLEKAALALKPDRFLVAYLP  199 (258)
T ss_dssp             TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCEEEECCcCHHHHHHHHHHhCCCCCEEEEEeC
Confidence            4689988766665 568899999999999998853

>3lvf_P GAPDH 1, glyceraldehyde-3-phosphate dehydrogenase 1; oxidoreductase, glycolysis, rossmann fold; HET: NAD; 1.70A {Staphylococcus aureus} PDB: 3vaz_P* 3l6o_Q 3k73_Q 3lc2_O* 3lc7_O 3lc1_P* 3hq4_R* 3kv3_O* 3l4s_Q* 3k9q_Q* 3ksd_Q* 3ksz_O*

Probab=84.81  E-value=1  Score=29.63  Aligned_cols=36  Identities=31%  Similarity=0.508  Sum_probs=29.8

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|++++|+|.-...+.+-..++.|.+.|++..+.
T Consensus        90 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps  125 (338)
T 3lvf_P           90 LNIDVVLECTGFYTDKDKAQAHIEAGAKKVLISAPA  125 (338)
T ss_dssp             TTCSEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred             cCCCEEEEccCCcCCHHHHHHHHHcCCCEEEECCCC
Confidence            389999999998776888889999888777776554

>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}

Probab=84.80  E-value=2  Score=28.02  Aligned_cols=72  Identities=14%  Similarity=0.119  Sum_probs=46.3

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFL   84 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v   84 (105)
                      ...+|+|+.|++.....+.+..+++.| .-|.+-   .|...+..   .+    -.+++.+.-.+..  ...+..+.+++
T Consensus        63 ~~~~D~V~i~tp~~~h~~~~~~al~aG-khVl~E---KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i  138 (359)
T 3e18_A           63 DEKVDAVLIATPNDSHKELAISALEAG-KHVVCE---KPVTMTSEDLLAIMDVAKRVNKHFMVHQNRRWDEDFLIIKEMF  138 (359)
T ss_dssp             CTTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEE---SSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGCHHHHHHHHHH
T ss_pred             CCCCCEEEEcCCcHHHHHHHHHHHHCC-CCEEee---CCCcCCHHHHHHHHHHHHHhCCeEEEEeeeccCHHHHHHHHHH
Confidence            357999999999988788888888865 444442   22223322   22    1234444333222  67889999999


Q ss_pred             HcCCC
Q 040104           85 RSGKI   89 (105)
Q Consensus        85 ~~g~i   89 (105)
                      ++|.+
T Consensus       139 ~~g~i  143 (359)
T 3e18_A          139 EQKTI  143 (359)
T ss_dssp             HHTTT
T ss_pred             HcCCC
Confidence            99987

>2pbf_A Protein-L-isoaspartate O-methyltransferase beta-A methyltransferase; protein repair, isoaspartyl formation, P. falciparum; HET: SAH; 2.00A {Plasmodium falciparum}

Probab=84.66  E-value=0.35  Score=29.16  Aligned_cols=33  Identities=12%  Similarity=-0.024  Sum_probs=27.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+........+..+.+.|+++|++++.-
T Consensus       161 ~~fD~I~~~~~~~~~~~~~~~~LkpgG~lv~~~  193 (227)
T 2pbf_A          161 GLFDAIHVGASASELPEILVDLLAENGKLIIPI  193 (227)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHHEEEEEEEEEEE
T ss_pred             CCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            468999887766666788999999999988764

>3duw_A OMT, O-methyltransferase, putative; alternating of alpha and beta with complex SAH; HET: SAH; 1.20A {Bacillus cereus} PDB: 3dul_A*

Probab=84.64  E-value=2.7  Score=25.06  Aligned_cols=34  Identities=21%  Similarity=0.090  Sum_probs=24.5

Q ss_pred             CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+-....   +..+..+.++|++||.++.-..
T Consensus       132 ~~fD~v~~d~~~~~~~~~l~~~~~~L~pgG~lv~~~~  168 (223)
T 3duw_A          132 EPFDFIFIDADKQNNPAYFEWALKLSRPGTVIIGDNV  168 (223)
T ss_dssp             CCCSEEEECSCGGGHHHHHHHHHHTCCTTCEEEEESC
T ss_pred             CCcCEEEEcCCcHHHHHHHHHHHHhcCCCcEEEEeCC
Confidence            469988843322   3357888999999998887643

>1u8f_O GAPDH, glyceraldehyde-3-phosphate dehydrogenase, liver; rossmann fold, oxidoreductase, mammalian GAPDH; HET: NAD; 1.75A {Homo sapiens} SCOP: c.2.1.3 d.81.1.1 PDB: 1znq_O* 1j0x_O* 3gpd_R* 1dss_G* 1crw_G* 1szj_G* 1ihx_A* 1ihy_A* 1gpd_G* 4gpd_1

Probab=84.59  E-value=0.74  Score=30.13  Aligned_cols=36  Identities=19%  Similarity=0.302  Sum_probs=30.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .++|+||+|+|.....+.+-.+++.|.+.+.+..+.
T Consensus        90 ~~vDvV~eatg~~~~~e~a~~~l~aGak~V~iSap~  125 (335)
T 1u8f_O           90 AGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPS  125 (335)
T ss_dssp             TTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCC
T ss_pred             CCCCEEEECCCchhhHHHHHHHHhCCCeEEEeccCC
Confidence            479999999999887888888888877888887654

>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}

Probab=84.58  E-value=5.6  Score=25.40  Aligned_cols=71  Identities=17%  Similarity=0.183  Sum_probs=44.8

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.| +-+.+--   |...+..   .+    -.+++.+.-....  ...+..+.+++.
T Consensus        61 ~~~D~V~i~tp~~~h~~~~~~al~~G-k~v~~ek---P~~~~~~~~~~l~~~a~~~g~~~~~~~~~r~~p~~~~~~~~i~  136 (332)
T 2glx_A           61 PDVDAVYVSTTNELHREQTLAAIRAG-KHVLCEK---PLAMTLEDAREMVVAAREAGVVLGTNHHLRNAAAHRAMRDAIA  136 (332)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEECS---SSCSSHHHHHHHHHHHHHHTCCEEECCCGGGSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCChhHhHHHHHHHHHCC-CeEEEeC---CCcCCHHHHHHHHHHHHHcCCEEEEeehhhcCHHHHHHHHHHH
Confidence            46999999999887677788888764 5455432   2222322   22    1234444333222  667899999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       137 ~g~i  140 (332)
T 2glx_A          137 EGRI  140 (332)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9987

>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}

Probab=84.37  E-value=2.1  Score=27.82  Aligned_cols=72  Identities=13%  Similarity=0.112  Sum_probs=46.0

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHH
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFL   84 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v   84 (105)
                      ...+|+|+.|++.....+.+..+++.|-. +.+--   |...+..   .+    -.+++.+.-.+..  ...+.++.+++
T Consensus        64 ~~~~D~V~i~tp~~~h~~~~~~al~~gk~-vl~EK---P~~~~~~~~~~l~~~a~~~~~~~~v~~~~R~~p~~~~~k~~i  139 (354)
T 3db2_A           64 REDVEMVIITVPNDKHAEVIEQCARSGKH-IYVEK---PISVSLDHAQRIDQVIKETGVKFLCGHSSRRLGALRKMKEMI  139 (354)
T ss_dssp             CSSCCEEEECSCTTSHHHHHHHHHHTTCE-EEEES---SSCSSHHHHHHHHHHHHHHCCCEEEECGGGGSHHHHHHHHHH
T ss_pred             CCCCCEEEEeCChHHHHHHHHHHHHcCCE-EEEcc---CCCCCHHHHHHHHHHHHHcCCeEEEeechhcCHHHHHHHHHH
Confidence            35799999999998877888888877644 44422   2222222   22    1234444333332  77889999999


Q ss_pred             HcCCC
Q 040104           85 RSGKI   89 (105)
Q Consensus        85 ~~g~i   89 (105)
                      .+|.+
T Consensus       140 ~~g~i  144 (354)
T 3db2_A          140 DTKEI  144 (354)
T ss_dssp             HTTTT
T ss_pred             hcCCC
Confidence            99988

>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}

Probab=84.18  E-value=2.1  Score=27.54  Aligned_cols=72  Identities=14%  Similarity=0.056  Sum_probs=46.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.|-. +.+--   |...+..   .+    -.+++.+.-.+..  ...+.++.+++.
T Consensus        66 ~~~D~V~i~tp~~~h~~~~~~al~~gk~-vl~EK---P~~~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  141 (330)
T 3e9m_A           66 ETIDIIYIPTYNQGHYSAAKLALSQGKP-VLLEK---PFTLNAAEAEELFAIAQEQGVFLMEAQKSVFLPITQKVKATIQ  141 (330)
T ss_dssp             TTCSEEEECCCGGGHHHHHHHHHHTTCC-EEECS---SCCSSHHHHHHHHHHHHHTTCCEEECCSGGGCHHHHHHHHHHH
T ss_pred             CCCCEEEEcCCCHHHHHHHHHHHHCCCe-EEEeC---CCCCCHHHHHHHHHHHHHcCCeEEEEEhhhhCHHHHHHHHHHh
Confidence            4799999999998877888888877643 44422   2222222   22    2244444333332  678899999999


Q ss_pred             cCCCC
Q 040104           86 SGKID   90 (105)
Q Consensus        86 ~g~i~   90 (105)
                      +|.+.
T Consensus       142 ~g~iG  146 (330)
T 3e9m_A          142 EGGLG  146 (330)
T ss_dssp             TTTTC
T ss_pred             CCCCC
Confidence            99873

>2yxe_A Protein-L-isoaspartate O-methyltransferase; rossman-type fold, alpha/beta/alpha sandwich structure, STRU genomics, NPPSFA; 2.00A {Methanocaldococcus jannaschii}

Probab=84.06  E-value=0.36  Score=28.83  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=26.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+.+.+.....+.+.++|+++|++++.-
T Consensus       145 ~~fD~v~~~~~~~~~~~~~~~~L~pgG~lv~~~  177 (215)
T 2yxe_A          145 APYDRIYTTAAGPKIPEPLIRQLKDGGKLLMPV  177 (215)
T ss_dssp             CCEEEEEESSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCeeEEEECCchHHHHHHHHHHcCCCcEEEEEE
Confidence            468999987665554578899999999998763

>3i23_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.30A {Enterococcus faecalis} PDB: 3fd8_A* 3hnp_A

Probab=84.03  E-value=6.6  Score=25.42  Aligned_cols=71  Identities=17%  Similarity=0.165  Sum_probs=46.7

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.| +-|.+-   .|...+..   .+    -.+++.+.-.+..  ...+.++.++++
T Consensus        64 ~~~D~V~i~tp~~~h~~~~~~al~aG-k~Vl~E---KP~a~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  139 (349)
T 3i23_A           64 PEIELITICTPAHTHYDLAKQAILAG-KSVIVE---KPFCDTLEHAEELFALGQEKGVVVMPYQNRRFDGDYLAMKQVVE  139 (349)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEC---SCSCSSHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCcHHHHHHHHHHHHcC-CEEEEE---CCCcCCHHHHHHHHHHHHHcCCeEEEEecccCCHHHHHHHHHHh
Confidence            47999999999988788888888866 445542   23333322   22    2244544433332  677899999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       140 ~g~i  143 (349)
T 3i23_A          140 QGFL  143 (349)
T ss_dssp             HTTT
T ss_pred             cCCC
Confidence            9987

>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}

Probab=83.69  E-value=6.3  Score=25.53  Aligned_cols=71  Identities=20%  Similarity=0.175  Sum_probs=46.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++...+.+.+..+++.| +-|.+-   .|...+..   .+    -.+++.+.-.+..  ...+.++.+++.
T Consensus        66 ~~vD~V~i~tp~~~H~~~~~~al~aG-khV~~E---KPla~~~~e~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~~~~i~  141 (352)
T 3kux_A           66 PSIDLIVIPTPNDTHFPLAQSALAAG-KHVVVD---KPFTVTLSQANALKEHADDAGLLLSVFHNRRWDSDFLTLKTLLA  141 (352)
T ss_dssp             SSCCEEEECSCTTTHHHHHHHHHHTT-CEEEEC---SSCCSCHHHHHHHHHHHHHTTCCEEECCGGGGCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHCC-CcEEEE---CCCcCCHHHHHHHHHHHHHcCCeEEEEeecccCHHHHHHHHHHh
Confidence            57999999999888788888888776 445553   22223322   22    1234444433332  677889999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       142 ~g~i  145 (352)
T 3kux_A          142 EGSL  145 (352)
T ss_dssp             HTTT
T ss_pred             cCCC
Confidence            9987

>1gad_O D-glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase (aldehyde(D)-NAD+(A)); HET: NAD; 1.80A {Escherichia coli} SCOP: c.2.1.3 d.81.1.1 PDB: 1dc4_A* 1dc3_A 1dc6_A* 1dc5_A* 1s7c_A* 1gae_O* 2vyn_A* 2vyv_A*

Probab=83.58  E-value=0.93  Score=29.68  Aligned_cols=35  Identities=29%  Similarity=0.293  Sum_probs=29.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+||+|+|.....+.+-..++.|.+.+.++.+.
T Consensus        88 ~vDvVf~atg~~~s~e~a~~~l~~GakvVdlSa~~  122 (330)
T 1gad_O           88 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPS  122 (330)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCCEEEECCCccccHHHHHHHHHCCCEEEEECCCC
Confidence            79999999998777888888888888888887654

>2hnk_A SAM-dependent O-methyltransferase; modified rossman fold; HET: SAH; 2.30A {Leptospira interrogans}

Probab=83.50  E-value=1  Score=27.47  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=26.0

Q ss_pred             CCCcEEEEccCCh---HHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFN---KTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~---~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+...+..   ..+..+.++|++||+++.-.
T Consensus       146 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  181 (239)
T 2hnk_A          146 SSIDLFFLDADKENYPNYYPLILKLLKPGGLLIADN  181 (239)
T ss_dssp             TCEEEEEECSCGGGHHHHHHHHHHHEEEEEEEEEEC
T ss_pred             CCcCEEEEeCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            5799998765544   35788999999999999864

>3doc_A Glyceraldehyde 3-phosphate dehydrogenase; ssgcid, structural genomics, PSI, protein structure initiative; HET: NAD; 2.40A {Brucella melitensis biovar ABORTUS2308} PDB: 3l0d_A*

Probab=83.39  E-value=1  Score=29.60  Aligned_cols=35  Identities=23%  Similarity=0.437  Sum_probs=29.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|++++|+|.-...+.+-..++.|.+.|++..+.
T Consensus        91 gvDiVlesTG~f~s~e~a~~hl~aGAkkViIsaps  125 (335)
T 3doc_A           91 NVDIALECTGIFTSRDKAALHLEAGAKRVIVSAPA  125 (335)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCCEEEEccCccCCHHHHHHHHHcCCCEEEECCCC
Confidence            89999999998777888888999888777776554

>3ids_C GAPDH, glyceraldehyde-3-phosphate dehydrogenase, glycoso; irreversible inhibitor, protein-ligand complex,X-RAY, glycol NAD, oxireductase; HET: NAD; 1.80A {Trypanosoma cruzi} PDB: 1ml3_A* 1qxs_C* 3dmt_A* 1k3t_A* 2x0n_A* 1gga_O* 1i32_A* 1a7k_A* 1i33_A* 1gyp_A* 1gyq_A*

Probab=83.26  E-value=1.1  Score=29.78  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=29.2

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|++++|+|.-...+.+-..++.|.+.|++..+.
T Consensus       103 gvDiVlesTG~f~s~e~A~~hl~aGAkkViISaps  137 (359)
T 3ids_C          103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA  137 (359)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCCEEEESSCC
T ss_pred             CccEEEEeccccCCHHHHHHHHHcCCCEEEECCCC
Confidence            89999999998776888888999888777776554

>1nvm_B Acetaldehyde dehydrogenase (acylating), 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: c.2.1.3 d.81.1.1

Probab=83.26  E-value=1.2  Score=28.83  Aligned_cols=31  Identities=19%  Similarity=0.245  Sum_probs=26.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhc--CCEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRA--GGKVCL   45 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~--~G~~v~   45 (105)
                      .++|+||+|+|...+.+.+..+++.  |..++.
T Consensus        70 ~~iDvV~~atp~~~h~~~a~~al~a~~Gk~Vi~  102 (312)
T 1nvm_B           70 ADIDFVFDATSASAHVQNEALLRQAKPGIRLID  102 (312)
T ss_dssp             GGEEEEEECSCHHHHHHHHHHHHHHCTTCEEEE
T ss_pred             CCCcEEEECCChHHHHHHHHHHHHhCCCCEEEE
Confidence            4799999999987778888888888  777766

>3dou_A Ribosomal RNA large subunit methyltransferase J; cell division, structural genomics, protein structure initiative, PSI; HET: SAM; 1.45A {Thermoplasma volcanium} SCOP: c.66.1.0

Probab=83.08  E-value=1.3  Score=26.33  Aligned_cols=32  Identities=28%  Similarity=0.426  Sum_probs=22.9

Q ss_pred             CCCcEEEE-----ccCCh------------HHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFD-----CAGFN------------KTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid-----~~g~~------------~~~~~~~~~l~~~G~~v~~   46 (105)
                      +.+|+|+-     +.|..            ..+..+.++|+|||+++.-
T Consensus        90 ~~~D~Vlsd~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~LkpGG~lv~k  138 (191)
T 3dou_A           90 EKVDDVVSDAMAKVSGIPSRDHAVSYQIGQRVMEIAVRYLRNGGNVLLK  138 (191)
T ss_dssp             SSEEEEEECCCCCCCSCHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             CcceEEecCCCcCCCCCcccCHHHHHHHHHHHHHHHHHHccCCCEEEEE
Confidence            47999884     23431            2466788999999999864

>1o54_A SAM-dependent O-methyltransferase; TM0748, structural genomi PSI, protein structure initiative, joint center for structu genomics; 1.65A {Thermotoga maritima} SCOP: c.66.1.13

Probab=83.02  E-value=1.1  Score=28.00  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=27.3

Q ss_pred             CCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+-..+.+ ..+..+.++|+++|+++...
T Consensus       180 ~~~D~V~~~~~~~~~~l~~~~~~L~pgG~l~~~~  213 (277)
T 1o54_A          180 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  213 (277)
T ss_dssp             CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             CccCEEEECCcCHHHHHHHHHHHcCCCCEEEEEe
Confidence            3689988776665 56889999999999999875

>3mb5_A SAM-dependent methyltransferase; RNA methyltransferase, M1A, TRMI, intermolecular contacts, R specificity, tetramer, disulfide bond; HET: SAM; 1.60A {Pyrococcus abyssi} PDB: 3lga_A* 3lhd_C*

Probab=82.82  E-value=1.2  Score=27.20  Aligned_cols=34  Identities=15%  Similarity=0.050  Sum_probs=27.5

Q ss_pred             CCCcEEEEccCChH-HHHHHHHhhhcCCEEEEEcC
Q 040104           15 TGIDVSFDCAGFNK-TMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        15 ~g~d~vid~~g~~~-~~~~~~~~l~~~G~~v~~g~   48 (105)
                      +.+|+|+-..+.+. .+..+.++|+++|+++++..
T Consensus       161 ~~~D~v~~~~~~~~~~l~~~~~~L~~gG~l~~~~~  195 (255)
T 3mb5_A          161 ENVDHVILDLPQPERVVEHAAKALKPGGFFVAYTP  195 (255)
T ss_dssp             CSEEEEEECSSCGGGGHHHHHHHEEEEEEEEEEES
T ss_pred             CCcCEEEECCCCHHHHHHHHHHHcCCCCEEEEEEC
Confidence            35899887776653 68999999999999998753

>2ld4_A Anamorsin; methyltransferase-like fold, alpha/beta fold, iron-sulfur PR biogenesis, apoptosis; NMR {Homo sapiens} PDB: 2yui_A

Probab=82.78  E-value=1.3  Score=25.54  Aligned_cols=32  Identities=16%  Similarity=0.236  Sum_probs=24.6

Q ss_pred             CCCcEEEEcc-------CChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCA-------GFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~-------g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      +.+|+|+-+.       .-...+.++.++|+|||++++.
T Consensus        62 ~~fD~V~~~~~l~~~~~~~~~~l~~~~r~LkpgG~l~~~  100 (176)
T 2ld4_A           62 SSFDIILSGLVPGSTTLHSAEILAEIARILRPGGCLFLK  100 (176)
T ss_dssp             SCEEEEEECCSTTCCCCCCHHHHHHHHHHEEEEEEEEEE
T ss_pred             CCEeEEEECChhhhcccCHHHHHHHHHHHCCCCEEEEEE
Confidence            4689988631       2244688999999999999985

>3eey_A Putative rRNA methylase; rRNA methylation, S-adenosyl-methionine, structural genomics structure initiative, PSI; HET: SAM; 2.20A {Clostridium thermocellum atcc 27405}

Probab=82.29  E-value=1.3  Score=25.94  Aligned_cols=35  Identities=17%  Similarity=0.255  Sum_probs=26.4

Q ss_pred             CCCCcEEEEccCC---------------hHHHHHHHHhhhcCCEEEEEcC
Q 040104           14 GTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCLVGM   48 (105)
Q Consensus        14 ~~g~d~vid~~g~---------------~~~~~~~~~~l~~~G~~v~~g~   48 (105)
                      ++.+|+|+-..+-               ...+..+.++|+++|+++....
T Consensus        91 ~~~fD~v~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~l~~~~~  140 (197)
T 3eey_A           91 DCPVKAVMFNLGYLPSGDHSISTRPETTIQALSKAMELLVTGGIITVVIY  140 (197)
T ss_dssp             CSCEEEEEEEESBCTTSCTTCBCCHHHHHHHHHHHHHHEEEEEEEEEEEC
T ss_pred             cCCceEEEEcCCcccCcccccccCcccHHHHHHHHHHhCcCCCEEEEEEc
Confidence            3568988865432               2458899999999999998753

>2ep7_A GAPDH, glyceraldehyde-3-phosphate dehydrogenase; oxidoreductase, structural genomics, NPPSFA; HET: NAD; 2.30A {Aquifex aeolicus}

Probab=81.96  E-value=1.2  Score=29.42  Aligned_cols=36  Identities=19%  Similarity=0.354  Sum_probs=28.4

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|+|++|+|.....+.+-..++.|...+++..+..
T Consensus        89 gvDiV~estG~~~s~e~a~~hl~aGakkVvisaps~  124 (342)
T 2ep7_A           89 GVDVVIEATGVFRDRENASKHLQGGAKKVIITAPAK  124 (342)
T ss_dssp             TCSEEEECSSSCCBHHHHTTTGGGTCSEEEESSCCB
T ss_pred             CCCEEEECCCchhhhhhhHHHHhcCCCEEEecCCCC
Confidence            899999999987767888888888876666665543

>3lbf_A Protein-L-isoaspartate O-methyltransferase; modified rossman-type fold, S-adenosyl-L- methionine; HET: SAH; 1.80A {Escherichia coli}

Probab=81.84  E-value=0.36  Score=28.72  Aligned_cols=32  Identities=16%  Similarity=0.163  Sum_probs=25.2

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      +.+|+|+...+-........+.|++||+++..
T Consensus       142 ~~~D~i~~~~~~~~~~~~~~~~L~pgG~lv~~  173 (210)
T 3lbf_A          142 APFDAIIVTAAPPEIPTALMTQLDEGGILVLP  173 (210)
T ss_dssp             CCEEEEEESSBCSSCCTHHHHTEEEEEEEEEE
T ss_pred             CCccEEEEccchhhhhHHHHHhcccCcEEEEE
Confidence            46899998665555456789999999998876

>2d2i_A Glyceraldehyde 3-phosphate dehydrogenase; rossmann fold, protein-NADP+ complex, oxidoreductase; HET: NAP; 2.50A {Synechococcus SP} PDB: 2duu_A

Probab=81.79  E-value=1.6  Score=29.24  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=28.2

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+||+|+|.....+.+-..++.|..-|++..+.
T Consensus        91 gvDvV~e~TG~f~s~e~a~~hl~aGakkVVIs~ps  125 (380)
T 2d2i_A           91 DIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPG  125 (380)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCcEEEEcCCC
Confidence            79999999998776788888888887766665543

>1r18_A Protein-L-isoaspartate(D-aspartate)-O-methyltrans; methyltransferase, isomerization, protein repair, S-adenosyl homocysteine; HET: SAH; 2.20A {Drosophila melanogaster} SCOP: c.66.1.7

Probab=81.75  E-value=0.5  Score=28.56  Aligned_cols=32  Identities=13%  Similarity=0.144  Sum_probs=26.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      +.+|+|+...+.........+.|+++|++++.
T Consensus       162 ~~fD~I~~~~~~~~~~~~~~~~LkpgG~lvi~  193 (227)
T 1r18_A          162 APYNAIHVGAAAPDTPTELINQLASGGRLIVP  193 (227)
T ss_dssp             CSEEEEEECSCBSSCCHHHHHTEEEEEEEEEE
T ss_pred             CCccEEEECCchHHHHHHHHHHhcCCCEEEEE
Confidence            46899988776666678899999999998875

>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}

Probab=81.64  E-value=2.5  Score=27.25  Aligned_cols=71  Identities=11%  Similarity=0.050  Sum_probs=45.0

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.|- -+.+--   |...+..   .+    -.+++.+.-.+..  ...+..+.+++.
T Consensus        64 ~~~D~V~i~tp~~~h~~~~~~al~~gk-~v~~EK---P~~~~~~~~~~l~~~a~~~g~~~~v~~~~r~~p~~~~~k~~i~  139 (344)
T 3euw_A           64 DDIDGIVIGSPTSTHVDLITRAVERGI-PALCEK---PIDLDIEMVRACKEKIGDGASKVMLGFNRRFDPSFAAINARVA  139 (344)
T ss_dssp             SCCCEEEECSCGGGHHHHHHHHHHTTC-CEEECS---CSCSCHHHHHHHHHHHGGGGGGEEECCGGGGCHHHHHHHHHHH
T ss_pred             CCCCEEEEeCCchhhHHHHHHHHHcCC-cEEEEC---CCCCCHHHHHHHHHHHHhcCCeEEecchhhcCHHHHHHHHHHh
Confidence            479999999999887777888877664 344432   2222222   12    1233433333322  678899999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       140 ~g~i  143 (344)
T 3euw_A          140 NQEI  143 (344)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9987

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=81.64  E-value=0.37  Score=27.11  Aligned_cols=34  Identities=12%  Similarity=0.035  Sum_probs=25.9

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|++|.|++.+..+.. ...+++++.++.+|.+.
T Consensus        80 ~~Divi~at~~~~~~~~-~~~l~~g~~vid~~~p~  113 (144)
T 3oj0_A           80 NNDVIITATSSKTPIVE-ERSLMPGKLFIDLGNPP  113 (144)
T ss_dssp             TCSEEEECSCCSSCSBC-GGGCCTTCEEEECCSSC
T ss_pred             CCCEEEEeCCCCCcEee-HHHcCCCCEEEEccCCc
Confidence            58999999998653222 37788999999998754

>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}

Probab=81.60  E-value=4.4  Score=26.01  Aligned_cols=71  Identities=20%  Similarity=0.153  Sum_probs=45.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.|- -+.+--   |...+..   .+    -.++..+.-.+..  ...+..+.+++.
T Consensus        66 ~~~D~V~i~tp~~~h~~~~~~al~aGk-~Vl~EK---P~a~~~~e~~~l~~~a~~~~~~~~v~~~~r~~p~~~~~~~~i~  141 (329)
T 3evn_A           66 ESIDVIYVATINQDHYKVAKAALLAGK-HVLVEK---PFTLTYDQANELFALAESCNLFLMEAQKSVFIPMTQVIKKLLA  141 (329)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTTC-EEEEES---SCCSSHHHHHHHHHHHHHTTCCEEEECSSCSSHHHHHHHHHHH
T ss_pred             CCCCEEEECCCcHHHHHHHHHHHHCCC-eEEEcc---CCcCCHHHHHHHHHHHHHcCCEEEEEEcccCCHHHHHHHHHHh
Confidence            479999999998887777888877664 444432   2222222   22    2244444333332  677889999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       142 ~g~i  145 (329)
T 3evn_A          142 SGEI  145 (329)
T ss_dssp             TTTT
T ss_pred             CCCC
Confidence            9987

>3fhl_A Putative oxidoreductase; NAD-binding domain, PSI-2, NYSGXRC, structur genomics, protein structure initiative; 1.93A {Bacteroides fragilis nctc 9343}

Probab=81.54  E-value=2.7  Score=27.41  Aligned_cols=71  Identities=15%  Similarity=0.054  Sum_probs=46.3

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---hh----hhcCeEEEEeecc--CCCHHHHHHHHH
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---PA----AAREVDVVGVFRY--KNTWPLCLEFLR   85 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~~----~~~~~~i~~~~~~--~~~~~~~~~~v~   85 (105)
                      ..+|+|+.|++.....+.+..+++.| +-|.+-   .|...+..   .+    -.+++.+.-.+..  ...+.++.+++.
T Consensus        64 ~~vD~V~i~tp~~~H~~~~~~al~aG-khVl~E---KP~a~~~~ea~~l~~~a~~~g~~~~v~~~~R~~p~~~~~k~~i~  139 (362)
T 3fhl_A           64 PEIDLIVVNTPDNTHYEYAGMALEAG-KNVVVE---KPFTSTTKQGEELIALAKKKGLMLSVYQNRRWDADFLTVRDILA  139 (362)
T ss_dssp             TTCCEEEECSCGGGHHHHHHHHHHTT-CEEEEE---SSCCSSHHHHHHHHHHHHHHTCCEEEECGGGGSHHHHHHHHHHH
T ss_pred             CCCCEEEEeCChHHHHHHHHHHHHCC-CeEEEe---cCCCCCHHHHHHHHHHHHHcCCEEEEEecceeCHHHHHHHHHHH
Confidence            47999999999988788888888775 444442   22223322   22    1234444433332  678899999999


Q ss_pred             cCCC
Q 040104           86 SGKI   89 (105)
Q Consensus        86 ~g~i   89 (105)
                      +|.+
T Consensus       140 ~G~i  143 (362)
T 3fhl_A          140 KSLL  143 (362)
T ss_dssp             TTTT
T ss_pred             cCCC
Confidence            9987

>1i1n_A Protein-L-isoaspartate O-methyltransferase; S-adenosyl homocysteine, protein repair; HET: SAH; 1.50A {Homo sapiens} SCOP: c.66.1.7 PDB: 1kr5_A*

Probab=81.47  E-value=0.52  Score=28.38  Aligned_cols=33  Identities=15%  Similarity=0.121  Sum_probs=26.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+........+..+.++|++||+++..-
T Consensus       150 ~~fD~i~~~~~~~~~~~~~~~~LkpgG~lv~~~  182 (226)
T 1i1n_A          150 APYDAIHVGAAAPVVPQALIDQLKPGGRLILPV  182 (226)
T ss_dssp             CCEEEEEECSBBSSCCHHHHHTEEEEEEEEEEE
T ss_pred             CCcCEEEECCchHHHHHHHHHhcCCCcEEEEEE
Confidence            368988876666666789999999999998763

>1fbn_A MJ fibrillarin homologue; MJ proteins, ribosomal RNA processing, snoRNP, structural genomics, BSGC structure funded by NIH; 1.60A {Methanocaldococcus jannaschii} SCOP: c.66.1.3 PDB: 1g8s_A

Probab=81.31  E-value=1.6  Score=26.48  Aligned_cols=32  Identities=16%  Similarity=0.194  Sum_probs=25.2

Q ss_pred             CCCcEEEEccCCh---H-HHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFN---K-TMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~---~-~~~~~~~~l~~~G~~v~~   46 (105)
                      ..+|+|+..+..+   . .+..+.+.|+++|++++.
T Consensus       142 ~~~D~v~~~~~~~~~~~~~l~~~~~~LkpgG~l~i~  177 (230)
T 1fbn_A          142 EKVDVIYEDVAQPNQAEILIKNAKWFLKKGGYGMIA  177 (230)
T ss_dssp             CCEEEEEECCCSTTHHHHHHHHHHHHEEEEEEEEEE
T ss_pred             ccEEEEEEecCChhHHHHHHHHHHHhCCCCcEEEEE
Confidence            4689988666555   3 378888999999999986

>4dib_A GAPDH, glyceraldehyde 3-phosphate dehydrogenase; niaid, structural genomics, national institute of allergy AN infectious diseases; 2.55A {Bacillus anthracis}

Probab=81.01  E-value=1.1  Score=29.64  Aligned_cols=36  Identities=19%  Similarity=0.309  Sum_probs=29.5

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|++++|+|.-...+.+-..++.|.+.|++..+.
T Consensus        90 ~gvDiVlesTG~f~s~e~a~~hl~aGAkkViISaps  125 (345)
T 4dib_A           90 LGVEVVIEATGKFNSKEKAILHVEAGAKKVILTAPG  125 (345)
T ss_dssp             TTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCccEEEEeccCcCCHHHHHHHHHCCCCEEEECCCC
Confidence            389999999998776888888999888777776554

>1obf_O Glyceraldehyde 3-phosphate dehydrogenase; glycolytic pathway, oxidoreductase, free-NAD GAPDH; HET: PG4; 1.7A {Achromobacter xylosoxidans} SCOP: c.2.1.3 d.81.1.1 PDB: 3gnq_A*

Probab=80.92  E-value=1.7  Score=28.59  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=27.6

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|++++|+|.-...+.+-..++.|...+++..+.
T Consensus        90 ~gvDiV~estG~f~s~e~a~~h~~aGakkVviSaps  125 (335)
T 1obf_O           90 LKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG  125 (335)
T ss_dssp             TTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred             cCCCEEEEccCccccHHHHHHHHHcCCCEEEECCcc
Confidence            389999999998766788888888887656665443

>3b1j_A Glyceraldehyde 3-phosphate dehydrogenase (NADP+); alpha/beta fold, oxidoreductase-protein binding complex; HET: NAD; 2.20A {Synechococcus elongatus} PDB: 3b1k_A* 3b20_A*

Probab=80.81  E-value=1.8  Score=28.43  Aligned_cols=35  Identities=26%  Similarity=0.293  Sum_probs=27.7

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+||+|+|.....+.+-..++.|..-|++..+.
T Consensus        91 ~vDvV~e~tg~~~s~e~a~~~l~~GakkVVId~~~  125 (339)
T 3b1j_A           91 DIDLVIESTGVFVTAEGASKHIQAGAKKVLITAPG  125 (339)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSEEEESSCC
T ss_pred             CCCEEEECCCccccHHHHHHHHHcCCcEEEEeCCC
Confidence            89999999998776788888888887766665443

>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}

Probab=80.49  E-value=0.83  Score=27.66  Aligned_cols=33  Identities=21%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             CCCcEEEEccCC---hHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGF---NKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~---~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|+|+...+.   ...+..+.++|++||+++...
T Consensus       125 ~~fD~I~~~~~~~~~~~~l~~~~~~L~pgG~lv~~~  160 (233)
T 2gpy_A          125 PLFDVLFIDAAKGQYRRFFDMYSPMVRPGGLILSDN  160 (233)
T ss_dssp             CCEEEEEEEGGGSCHHHHHHHHGGGEEEEEEEEEET
T ss_pred             CCccEEEECCCHHHHHHHHHHHHHHcCCCeEEEEEc
Confidence            478988865543   345788899999999998863

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	105
d1pl8a2	171	c.2.1.1 (A:146-316) Ketose reductase (sorbitol deh	8e-17
d1e3ja2	170	c.2.1.1 (A:143-312) Ketose reductase (sorbitol deh	4e-13
d1vj0a2	182	c.2.1.1 (A:156-337) Hypothetical protein TM0436 {T	5e-08
d1h2ba2	172	c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeo	1e-07
d1rjwa2	168	c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillu	3e-05
d1jqba2	174	c.2.1.1 (A:1140-1313) Bacterial secondary alcohol	1e-04
d1llua2	166	c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudom	2e-04
d1cdoa2	175	c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Ga	2e-04
d2fzwa2	176	c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (	0.002
d1kola2	195	c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Ps	0.003

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]} Length = 171

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 69.1 bits (168), Expect = 8e-17
 Identities = 34/78 (43%), Positives = 49/78 (62%)

Query: 13  MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFR 72
           +G   +V+ +C G   ++   + ATR+GG + LVG+G    TVPL  AA REVD+ GVFR
Sbjct: 94  LGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFR 153

Query: 73  YKNTWPLCLEFLRSGKID 90
           Y NTWP+ +  L S  ++
Sbjct: 154 YCNTWPVAISMLASKSVN 171

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]} Length = 170

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

 Score = 59.6 bits (143), Expect = 4e-13
 Identities = 37/83 (44%), Positives = 55/83 (66%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREV 65
           +E+I  A+G   +V+ DC+G  K ++  ++ TR GG + LVGMG   +TVPL  A ARE+
Sbjct: 88  IERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREI 147

Query: 66  DVVGVFRYKNTWPLCLEFLRSGK 88
           D+  VFRY N +P+ LE + SG+
Sbjct: 148 DIKSVFRYCNDYPIALEMVASGR 170

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]} Length = 182

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

 Score = 46.1 bits (108), Expect = 5e-08
 Identities = 13/92 (14%), Positives = 28/92 (30%), Gaps = 4/92 (4%)

Query: 7   EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAA---R 63
             +D   G G D   +  G ++ +       R GG   + G+   +  VP         +
Sbjct: 91  AIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLK 150

Query: 64  EVDVVGVFRY-KNTWPLCLEFLRSGKIDIKPL 94
                G++    + +   +         +  L
Sbjct: 151 NATFKGIWVSDTSHFVKTVSITSRNYQLLSKL 182

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]} Length = 172

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

 Score = 44.9 bits (105), Expect = 1e-07
 Identities = 16/81 (19%), Positives = 28/81 (34%), Gaps = 2/81 (2%)

Query: 9   IDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVV 68
           ++   G G++V+ D  G   T+          G++ +VG    E+  P     + EV   
Sbjct: 93  MELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGY-GGELRFPTIRVISSEVSFE 151

Query: 69  GVFRY-KNTWPLCLEFLRSGK 88
           G            +     GK
Sbjct: 152 GSLVGNYVELHELVTLALQGK 172

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]} Length = 168

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

 Score = 38.5 bits (88), Expect = 3e-05
 Identities = 17/78 (21%), Positives = 31/78 (39%), Gaps = 1/78 (1%)

Query: 13  MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVF- 71
              G+  +   A       +A ++ R GG   LVG+   EM +P+       + ++G   
Sbjct: 90  KVGGVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIV 149

Query: 72  RYKNTWPLCLEFLRSGKI 89
             +      L+F   GK+
Sbjct: 150 GTRKDLQEALQFAAEGKV 167

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]} Length = 174

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

 Score = 36.8 bits (84), Expect = 1e-04
 Identities = 9/49 (18%), Positives = 19/49 (38%)

Query: 13  MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAA 61
            G G+D      G ++T+S A+   + GG +  +        + +    
Sbjct: 93  NGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVE 141

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]} Length = 166

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

 Score = 36.6 bits (83), Expect = 2e-04
 Identities = 16/85 (18%), Positives = 29/85 (34%), Gaps = 1/85 (1%)

Query: 4   EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAR 63
           E+  +  +    G       A  N     A+   R GG + LVG+   +   P+     +
Sbjct: 81  EDPVEAIQRDIGGAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLK 140

Query: 64  EVDVVGVFRY-KNTWPLCLEFLRSG 87
            + + G     +      L+F   G
Sbjct: 141 GLHIAGSIVGTRADLQEALDFAGEG 165

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]} Length = 175

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

 Score = 36.2 bits (82), Expect = 2e-04
 Identities = 19/87 (21%), Positives = 28/87 (32%), Gaps = 5/87 (5%)

Query: 7   EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVC-LVGMGHHEMTVPLTPAAAREV 65
           + + K    G+D S +C G    M  AL +   G  V  LVG                  
Sbjct: 89  QVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGR 148

Query: 66  DVVGV----FRYKNTWPLCLEFLRSGK 88
              G     F+ K+  P  ++     K
Sbjct: 149 TWKGSMFGGFKGKDGVPKMVKAYLDKK 175

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]} Length = 176

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.002
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 6/89 (6%)

Query: 6   VEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAA-AR 63
            E + +    G+D SF+C G  K M  AL A   G G   +VG+      +   P     
Sbjct: 88  QEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVT 147

Query: 64  EVDVVGVF----RYKNTWPLCLEFLRSGK 88
                G      +   + P  +    S K
Sbjct: 148 GRTWKGTAFGGWKSVESVPKLVSEYMSKK 176

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]} Length = 195

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

 Score = 32.9 bits (74), Expect = 0.003
 Identities = 13/76 (17%), Positives = 27/76 (35%), Gaps = 17/76 (22%)

Query: 1   DIAEEVEKIDKAMGTGIDVSFDCAGF---------------NKTMSTALSATRAGGKVCL 45
            + E++  +       +D + D  GF                  +++ +  TR  GK+ +
Sbjct: 81  PLHEQIAALL--GEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGI 138

Query: 46  VGMGHHEMTVPLTPAA 61
            G+   E    +  AA
Sbjct: 139 PGLYVTEDPGAVDAAA 154

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	105
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	99.77
d1pl8a2	171	Ketose reductase (sorbitol dehydrogenase) {Human (	99.76
d1jvba2	170	Alcohol dehydrogenase {Archaeon Sulfolobus solfata	99.73
d1f8fa2	174	Benzyl alcohol dehydrogenase {Acinetobacter calcoa	99.71
d1h2ba2	172	Alcohol dehydrogenase {Archaeon Aeropyrum pernix [	99.67
d1e3ia2	174	Alcohol dehydrogenase {Mouse (Mus musculus), class	99.58
d1vj0a2	182	Hypothetical protein TM0436 {Thermotoga maritima [	99.58
d1jqba2	174	Bacterial secondary alcohol dehydrogenase {Clostri	99.55
d1rjwa2	168	Alcohol dehydrogenase {Bacillus stearothermophilus	99.52
d1llua2	166	Alcohol dehydrogenase {Pseudomonas aeruginosa [Tax	99.51
d1pqwa_	183	Putative enoyl reductase domain of polyketide synt	99.5
d1p0fa2	174	Alcohol dehydrogenase {Frog (Rana perezi) [TaxId:	99.49
d1yb5a2	174	Quinone oxidoreductase {Human (Homo sapiens) [TaxI	99.49
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	99.46
d1gu7a2	189	2,4-dienoyl-CoA reductase {Yeast (Candida tropical	99.43
d1v3va2	182	Leukotriene b4 12-hydroxydehydrogenase/prostagland	99.42
d1uufa2	168	Hypothetical protein YahK {Escherichia coli [TaxId	99.41
d1cdoa2	175	Alcohol dehydrogenase {Cod (Gadus callarias) [TaxI	99.39
d1xa0a2	176	B. subtilis YhfP homologue {Bacillus stearothermop	99.37
d2fzwa2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.37
d1kola2	195	Formaldehyde dehydrogenase {Pseudomonas putida [Ta	99.35
d1vj1a2	187	Putative zinc-binding alcohol dehydrogenase {Mouse	99.33
d2jhfa2	176	Alcohol dehydrogenase {Horse (Equus caballus) [Tax	99.32
d1d1ta2	176	Alcohol dehydrogenase {Human (Homo sapiens), diffe	99.25
d1tt7a2	167	Hypothetical protein YhfP {Bacillus subtilis [TaxI	99.14
d1iz0a2	171	Quinone oxidoreductase {Thermus thermophilus [TaxI	99.13
d1qora2	179	Quinone oxidoreductase {Escherichia coli [TaxId: 5	99.06
d1o89a2	177	Hypothetical protein YhdH {Escherichia coli [TaxId	98.65
d2czca2	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.46
d1dssg1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	95.24
d1obfo1	173	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.61
d3cmco1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.52
d1hdgo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.41
d1cf2o1	171	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.35
d1gado1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	94.31
d1b7go1	178	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.34
d2g82a1	168	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.21
d2b4ro1	166	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.17
d1rm4a1	172	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	93.14
d1u8fo1	169	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.92
d1k3ta1	190	Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {	92.74
d1dl5a1	213	Protein-L-isoaspartyl O-methyltransferase {Thermot	88.03
d1i1na_	224	Protein-L-isoaspartyl O-methyltransferase {Human (	87.58
d1yb2a1	250	Hypothetical protein Ta0852 {Thermoplasma acidophi	87.45
d1j5pa4	132	Hypothetical protein TM1643 {Thermotoga maritima [	86.21
d1i9ga_	264	Probable methyltransferase Rv2118c {Mycobacterium	84.34
d1o54a_	266	Hypothetical protein TM0748 {Thermotoga maritima [	83.28
d1vbfa_	224	Protein-L-isoaspartyl O-methyltransferase {Sulfolo	83.05
d2f1fa2	86	Acetolactate synthase small subunit, IlvH {Escheri	83.0
d1yl7a1	135	Dihydrodipicolinate reductase {Mycobacterium tuber	82.37
d2pc6a1	86	Acetolactate synthase small subunit, IlvH {Nitroso	80.93

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=99.77  E-value=3.2e-18  Score=101.03  Aligned_cols=85  Identities=44%  Similarity=0.794  Sum_probs=76.2

Q ss_pred             HHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHH
Q 040104            4 EEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEF   83 (105)
Q Consensus         4 ~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~   83 (105)
                      +..+.+++..|.++|++|||+|++.+++.++++++++|+++.+|.+..+.++++..++.+++++.|++.+.++|++++++
T Consensus        86 ~~~~~~~~~~g~g~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~gs~~~~~~~~~ai~l  165 (170)
T d1e3ja2          86 SIIERIRSAIGDLPNVTIDCSGNEKCITIGINITRTGGTLMLVGMGSQMVTVPLVNACAREIDIKSVFRYCNDYPIALEM  165 (170)
T ss_dssp             HHHHHHHHHSSSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCSSCCCCCHHHHHTTTCEEEECCSCSSCHHHHHHH
T ss_pred             hhhhhhhcccccCCceeeecCCChHHHHHHHHHHhcCCceEEEecCCCCCCcCHHHHHHCCCEEEEEECCHHHHHHHHHH
Confidence            45566666668899999999999988999999999999999999887777888888999999999998887899999999


Q ss_pred             HHcCC
Q 040104           84 LRSGK   88 (105)
Q Consensus        84 v~~g~   88 (105)
                      +++||
T Consensus       166 i~~Gk  170 (170)
T d1e3ja2         166 VASGR  170 (170)
T ss_dssp             HHTTS
T ss_pred             HHcCC
Confidence            99986

>d1pl8a2 c.2.1.1 (A:146-316) Ketose reductase (sorbitol dehydrogenase) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.76  E-value=5.5e-18  Score=100.18  Aligned_cols=84  Identities=42%  Similarity=0.805  Sum_probs=74.7

Q ss_pred             HHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeeccCCCHHHHHHHHHc
Q 040104            7 EKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRYKNTWPLCLEFLRS   86 (105)
Q Consensus         7 ~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~v~~   86 (105)
                      +.+....+.++|++|||+|++..++.++++++++|+++.+|.+..+.++++..+++|++++.|++.+..+|+++++++++
T Consensus        88 ~~~~~~~g~g~Dvvid~~G~~~~~~~a~~~~~~gG~iv~~G~~~~~~~~~~~~~~~k~l~i~Gs~~~~~~~~~al~li~~  167 (171)
T d1pl8a2          88 RKVEGQLGCKPEVTIECTGAEASIQAGIYATRSGGTLVLVGLGSEMTTVPLLHAAIREVDIKGVFRYCNTWPVAISMLAS  167 (171)
T ss_dssp             HHHHHHHTSCCSEEEECSCCHHHHHHHHHHSCTTCEEEECSCCCSCCCCCHHHHHHTTCEEEECCSCSSCHHHHHHHHHT
T ss_pred             ccccccCCCCceEEEeccCCchhHHHHHHHhcCCCEEEEEecCCCCCccCHHHHHHCCcEEEEEeCCHhHHHHHHHHHHc
Confidence            33333347799999999999998999999999999999999988778899999999999999998888899999999999


Q ss_pred             CCCC
Q 040104           87 GKID   90 (105)
Q Consensus        87 g~i~   90 (105)
                      |+++
T Consensus       168 gkid  171 (171)
T d1pl8a2         168 KSVN  171 (171)
T ss_dssp             TSCC
T ss_pred             CCCC
Confidence            9984

>d1jvba2 c.2.1.1 (A:144-313) Alcohol dehydrogenase {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=99.73  E-value=1.3e-18  Score=102.75  Aligned_cols=86  Identities=20%  Similarity=0.284  Sum_probs=78.6

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHH
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLC   80 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~   80 (105)
                      +++.+++++.+ ++++|++|||+|++..++.++++++++|+++.+|.+..+.+++...++++++++.|++.+ +++++++
T Consensus        83 ~~~~~~~~~~~~~~~~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~i~i~Gs~~~~~~d~~~~  162 (170)
T d1jvba2          83 QDPLAEIRRITESKGVDAVIDLNNSEKTLSVYPKALAKQGKYVMVGLFGADLHYHAPLITLSEIQFVGSLVGNQSDFLGI  162 (170)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEESCCCHHHHTTGGGGEEEEEEEEECCSSCCCCCCCHHHHHHHTCEEEECCSCCHHHHHHH
T ss_pred             cCHHHHHHHHhhcccchhhhcccccchHHHhhhhhcccCCEEEEeccccCccccCHHHHHhCCcEEEEEecCCHHHHHHH
Confidence            45678888888 668999999999998899999999999999999998878889998999999999999987 7889999


Q ss_pred             HHHHHcCC
Q 040104           81 LEFLRSGK   88 (105)
Q Consensus        81 ~~~v~~g~   88 (105)
                      ++++++||
T Consensus       163 l~lv~~GK  170 (170)
T d1jvba2         163 MRLAEAGK  170 (170)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99999996

>d1f8fa2 c.2.1.1 (A:163-336) Benzyl alcohol dehydrogenase {Acinetobacter calcoaceticus [TaxId: 471]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Benzyl alcohol dehydrogenase
species: Acinetobacter calcoaceticus [TaxId: 471]

Probab=99.71  E-value=8.8e-18  Score=99.63  Aligned_cols=86  Identities=17%  Similarity=0.305  Sum_probs=75.6

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC--CCccccchhhhhcCeEEEEeecc----CCC
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH--HEMTVPLTPAAAREVDVVGVFRY----KNT   76 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~--~~~~~~~~~~~~~~~~i~~~~~~----~~~   76 (105)
                      +++.+++++++++|+|++|||+|++..++.++++++++|+++.+|.+.  .+.++++..++++++++.|++..    +++
T Consensus        83 ~~~~~~i~~~t~gg~D~vid~~G~~~~~~~~~~~~~~~G~i~~~G~~~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~~  162 (174)
T d1f8fa2          83 QDPVAAIKEITDGGVNFALESTGSPEILKQGVDALGILGKIAVVGAPQLGTTAQFDVNDLLLGGKTILGVVEGSGSPKKF  162 (174)
T ss_dssp             SCHHHHHHHHTTSCEEEEEECSCCHHHHHHHHHTEEEEEEEEECCCCSTTCCCCCCHHHHHHTTCEEEECSGGGSCHHHH
T ss_pred             cCHHHHHHHHcCCCCcEEEEcCCcHHHHHHHHhcccCceEEEEEeecCCCcccccCHHHHHHCCCEEEEEEecCCChHHH
Confidence            567889999997799999999999988999999999999999999754  34567888889999999999754    467


Q ss_pred             HHHHHHHHHcCC
Q 040104           77 WPLCLEFLRSGK   88 (105)
Q Consensus        77 ~~~~~~~v~~g~   88 (105)
                      ++++++++++||
T Consensus       163 ~~~~~~l~~~Gk  174 (174)
T d1f8fa2         163 IPELVRLYQQGK  174 (174)
T ss_dssp             HHHHHHHHHTTS
T ss_pred             HHHHHHHHHcCC
Confidence            999999999986

>d1h2ba2 c.2.1.1 (A:155-326) Alcohol dehydrogenase {Archaeon Aeropyrum pernix [TaxId: 56636]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Archaeon Aeropyrum pernix [TaxId: 56636]

Probab=99.67  E-value=2.9e-17  Score=97.12  Aligned_cols=84  Identities=21%  Similarity=0.311  Sum_probs=74.0

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      +..+.+.+.+ +.|+|++|||+|+...++.++++++++|+++.+|... +.++++..++++++++.|++.+ +.++++++
T Consensus        87 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~a~~~l~~~G~iv~~G~~~-~~~~~~~~l~~k~~~i~Gs~~~~~~d~~~~l  165 (172)
T d1h2ba2          87 DPVKQVMELTRGRGVNVAMDFVGSQATVDYTPYLLGRMGRLIIVGYGG-ELRFPTIRVISSEVSFEGSLVGNYVELHELV  165 (172)
T ss_dssp             CHHHHHHHHTTTCCEEEEEESSCCHHHHHHGGGGEEEEEEEEECCCSS-CCCCCHHHHHHTTCEEEECCSCCHHHHHHHH
T ss_pred             cHHHHHHHhhCCCCceEEEEecCcchHHHHHHHHHhCCCEEEEEeCcc-cccCCHHHHHhCCcEEEEEEecCHHHHHHHH
Confidence            4456667777 6799999999999988999999999999999999753 5678888899999999999988 78899999


Q ss_pred             HHHHcCC
Q 040104           82 EFLRSGK   88 (105)
Q Consensus        82 ~~v~~g~   88 (105)
                      +++++||
T Consensus       166 ~l~~~GK  172 (172)
T d1h2ba2         166 TLALQGK  172 (172)
T ss_dssp             HHHHTTS
T ss_pred             HHHHcCC
Confidence            9999996

>d1e3ia2 c.2.1.1 (A:168-341) Alcohol dehydrogenase {Mouse (Mus musculus), class II [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Mouse (Mus musculus), class II [TaxId: 10090]

Probab=99.58  E-value=1.5e-15  Score=90.01  Aligned_cols=82  Identities=28%  Similarity=0.438  Sum_probs=67.5

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchhhhhcCeEEEEeecc----CCCHHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----KNTWPL   79 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~   79 (105)
                      .+.+.+.+ ++|+|++|||+|++.++++++++++++ |+++++|.+.++.+++...++ .++++.|++..    ..++++
T Consensus        87 ~~~~~~~~~~~G~d~vie~~G~~~~~~~a~~~~~~g~G~~v~vG~~~~~~~i~~~~~~-~~k~i~Gs~~Gs~~~~~d~p~  165 (174)
T d1e3ia2          87 VQDVITELTAGGVDYSLDCAGTAQTLKAAVDCTVLGWGSCTVVGAKVDEMTIPTVDVI-LGRSINGTFFGGWKSVDSVPN  165 (174)
T ss_dssp             HHHHHHHHHTSCBSEEEESSCCHHHHHHHHHTBCTTTCEEEECCCSSSEEEEEHHHHH-TTCEEEECSGGGCCHHHHHHH
T ss_pred             hhhhHhhhhcCCCcEEEEecccchHHHHHHHHhhcCCeEEEecCCCCCccccchHHHh-ccCEEEEEEeeCCChHHHHHH
Confidence            34445555 789999999999999999999999996 999999988777777766554 46789998754    568999


Q ss_pred             HHHHHHcCC
Q 040104           80 CLEFLRSGK   88 (105)
Q Consensus        80 ~~~~v~~g~   88 (105)
                      +++++.+||
T Consensus       166 li~l~~~GK  174 (174)
T d1e3ia2         166 LVSDYKNKK  174 (174)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHCcC
Confidence            999999986

>d1vj0a2 c.2.1.1 (A:156-337) Hypothetical protein TM0436 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein TM0436
species: Thermotoga maritima [TaxId: 2336]

Probab=99.58  E-value=2.7e-15  Score=89.18  Aligned_cols=84  Identities=13%  Similarity=0.224  Sum_probs=69.6

Q ss_pred             HHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC--ccccch-hhhhcCeEEEEeecc-CCCHH
Q 040104            4 EEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE--MTVPLT-PAAAREVDVVGVFRY-KNTWP   78 (105)
Q Consensus         4 ~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~--~~~~~~-~~~~~~~~i~~~~~~-~~~~~   78 (105)
                      +..+++++.+ +.|+|+||||+|++.+++.++++++++|+++.+|.+.+.  .+++.. .+++|++++.|++.+ +++++
T Consensus        87 ~~~~~i~~~~~~~g~Dvvid~vG~~~~~~~a~~~l~~~G~iv~~G~~~~~~~~~~~~~~~l~~k~l~i~G~~~~~~~~~~  166 (182)
T d1vj0a2          87 ERRKAIMDITHGRGADFILEATGDSRALLEGSELLRRGGFYSVAGVAVPQDPVPFKVYEWLVLKNATFKGIWVSDTSHFV  166 (182)
T ss_dssp             HHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCSCCCCEEECHHHHTTTTTCEEEECCCCCHHHHH
T ss_pred             HHHHHHHHhhCCCCceEEeecCCchhHHHHHHHHhcCCCEEEEEeecCCCCccccccHHHHHHCCcEEEEEEeCCHHHHH
Confidence            4556778888 569999999999988899999999999999999975433  344433 357899999999988 78899


Q ss_pred             HHHHHHHcC
Q 040104           79 LCLEFLRSG   87 (105)
Q Consensus        79 ~~~~~v~~g   87 (105)
                      +++++++++
T Consensus       167 ~~~~~i~~~  175 (182)
T d1vj0a2         167 KTVSITSRN  175 (182)
T ss_dssp             HHHHHHHTC
T ss_pred             HHHHHHHHC
Confidence            999999875

>d1jqba2 c.2.1.1 (A:1140-1313) Bacterial secondary alcohol dehydrogenase {Clostridium beijerinckii [TaxId: 1520]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Bacterial secondary alcohol dehydrogenase
species: Clostridium beijerinckii [TaxId: 1520]

Probab=99.55  E-value=3.4e-15  Score=88.40  Aligned_cols=86  Identities=13%  Similarity=0.162  Sum_probs=69.0

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchh----hhhcCeEEEEeecc--CC
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTP----AAAREVDVVGVFRY--KN   75 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~----~~~~~~~i~~~~~~--~~   75 (105)
                      +++.+++++.+ +.|+|++|||+|++.++++++++++++|+++.+|.+.....+++..    ...+++++.++...  +.
T Consensus        82 ~~~~~~v~~~t~g~G~D~vid~~g~~~~~~~a~~~~~~~G~iv~~G~~~~~~~~~~~~~~~~~~~~~~~i~g~~~~~~r~  161 (174)
T d1jqba2          82 GHIEDQVMKLTNGKGVDRVIMAGGGSETLSQAVKMVKPGGIISNINYHGSGDALLIPRVEWGCGMAHKTIKGGLCPGGRL  161 (174)
T ss_dssp             SCHHHHHHHHTTTSCEEEEEECSSCTTHHHHHHHHEEEEEEEEECCCCCSSSEEEEETTTTGGGTBCCEEEEBCCCCHHH
T ss_pred             hhHHHHHHHHhhccCcceEEEccCCHHHHHHHHHHHhcCCEEEEEeecCCCCcCcCcHhHHHHHhCccEEEEecCCCCcc
Confidence            45678899999 5699999999999888999999999999999999876544443322    24578899998775  45


Q ss_pred             CHHHHHHHHHcCC
Q 040104           76 TWPLCLEFLRSGK   88 (105)
Q Consensus        76 ~~~~~~~~v~~g~   88 (105)
                      .+++++++++.||
T Consensus       162 ~~e~l~~li~~gk  174 (174)
T d1jqba2         162 RAERLRDMVVYNR  174 (174)
T ss_dssp             HHHHHHHHHHTTS
T ss_pred             cHHHHHHHHHcCC
Confidence            5778889999885

>d1rjwa2 c.2.1.1 (A:138-305) Alcohol dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.52  E-value=1.1e-14  Score=85.27  Aligned_cols=87  Identities=21%  Similarity=0.419  Sum_probs=73.9

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      ++..+.+++.+. +.|.++++++++..++.++++++++|+++.+|.+.++.+++...++.+++++.|++.+ ++++++++
T Consensus        81 ~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~a~~~l~~~G~i~~~g~~~~~~~~~~~~~~~~~~~i~gs~~~~~~~~~~~l  159 (168)
T d1rjwa2          81 EDAAKFMKEKVG-GVHAAVVTAVSKPAFQSAYNSIRRGGACVLVGLPPEEMPIPIFDTVLNGIKIIGSIVGTRKDLQEAL  159 (168)
T ss_dssp             SCHHHHHHHHHS-SEEEEEESSCCHHHHHHHHHHEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHH
T ss_pred             chhhhhcccccC-CCceEEeecCCHHHHHHHHHHhccCCceEecccccCCCCCCHHHHHHCCcEEEEEeeCCHHHHHHHH
Confidence            345667777775 4555566677777799999999999999999998888888888899999999999877 78999999


Q ss_pred             HHHHcCCCC
Q 040104           82 EFLRSGKID   90 (105)
Q Consensus        82 ~~v~~g~i~   90 (105)
                      +++++|+++
T Consensus       160 ~l~~~Gkik  168 (168)
T d1rjwa2         160 QFAAEGKVK  168 (168)
T ss_dssp             HHHHTTSCC
T ss_pred             HHHHhCCCC
Confidence            999999983

>d1llua2 c.2.1.1 (A:144-309) Alcohol dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=99.51  E-value=7.9e-15  Score=85.94  Aligned_cols=84  Identities=23%  Similarity=0.414  Sum_probs=71.9

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHH
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCL   81 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~   81 (105)
                      ++..+.+++.++ +.+.++++++++..++.++++++++|+++.+|.+.++.++++..++++++++.|++.+ ++++++++
T Consensus        81 ~~~~~~~~~~~~-g~~~~i~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~~~~~d~~e~l  159 (166)
T d1llua2          81 EDPVEAIQRDIG-GAHGVLVTAVSNSAFGQAIGMARRGGTIALVGLPPGDFPTPIFDVVLKGLHIAGSIVGTRADLQEAL  159 (166)
T ss_dssp             SCHHHHHHHHHS-SEEEEEECCSCHHHHHHHHTTEEEEEEEEECCCCSSEEEEEHHHHHHTTCEEEECCSCCHHHHHHHH
T ss_pred             hhHHHHHHHhhc-CCcccccccccchHHHHHHHHhcCCcEEEEEEecCCCccCCHHHHHhCCcEEEEEeecCHHHHHHHH
Confidence            345666776654 5677777788888899999999999999999988777888888899999999999887 78899999


Q ss_pred             HHHHcC
Q 040104           82 EFLRSG   87 (105)
Q Consensus        82 ~~v~~g   87 (105)
                      +++++|
T Consensus       160 ~l~~~G  165 (166)
T d1llua2         160 DFAGEG  165 (166)
T ss_dssp             HHHHTT
T ss_pred             HHHHCc
Confidence            999987

>d1pqwa_ c.2.1.1 (A:) Putative enoyl reductase domain of polyketide synthase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative enoyl reductase domain of polyketide synthase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.50  E-value=2.4e-14  Score=84.91  Aligned_cols=90  Identities=17%  Similarity=0.211  Sum_probs=69.6

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCc-cccchhhhhcCeEEEEeecc-------
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEM-TVPLTPAAAREVDVVGVFRY-------   73 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~-~~~~~~~~~~~~~i~~~~~~-------   73 (105)
                      +++.+++++.+ +.|+|++|||+|++. ++.++++|+++|+++.+|...... .......+.+++++.++...       
T Consensus        80 ~~~~~~v~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  158 (183)
T d1pqwa_          80 VDFADEILELTDGYGVDVVLNSLAGEA-IQRGVQILAPGGRFIELGKKDVYADASLGLAALAKSASFSVVDLDLNLKLQP  158 (183)
T ss_dssp             STHHHHHHHHTTTCCEEEEEECCCTHH-HHHHHHTEEEEEEEEECSCGGGTTTCEEEGGGGTTTCEEEECCHHHHHHHCH
T ss_pred             cCHHHHHHHHhCCCCEEEEEecccchH-HHHHHHHhcCCCEEEEEccCCCCCCcccchHHHhCCcEEEEEEccceeccCH
Confidence            56889999999 579999999999865 999999999999999999654322 22222345688888877532       


Q ss_pred             ---CCCHHHHHHHHHcCCCCCCC
Q 040104           74 ---KNTWPLCLEFLRSGKIDIKP   93 (105)
Q Consensus        74 ---~~~~~~~~~~v~~g~i~~~~   93 (105)
                         ++.++++.+++++|+++|-|
T Consensus       159 ~~~~~~~~~v~~~i~~G~i~p~P  181 (183)
T d1pqwa_         159 ARYRQLLQHILQHVADGKLEVLP  181 (183)
T ss_dssp             HHHHHHHHHHHHHHHTTSSCCCC
T ss_pred             HHHHHHHHHHHHHHHCCCCceeC
Confidence               45688899999999997643

>d1p0fa2 c.2.1.1 (A:1164-1337) Alcohol dehydrogenase {Frog (Rana perezi) [TaxId: 8403]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Frog (Rana perezi) [TaxId: 8403]

Probab=99.49  E-value=1.5e-13  Score=81.15  Aligned_cols=82  Identities=22%  Similarity=0.293  Sum_probs=66.0

Q ss_pred             HHHHHH-cCCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccchh-hhhcCeEEEEeecc---CCCHHHH
Q 040104            7 EKIDKA-MGTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLTP-AAAREVDVVGVFRY---KNTWPLC   80 (105)
Q Consensus         7 ~~~~~~-~~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~~-~~~~~~~i~~~~~~---~~~~~~~   80 (105)
                      +++.+. +++|+|++||++|++.+++.++.+++++ |+++++|.+.....+++.. ++.++++|.|++..   .++++++
T Consensus        87 ~~~~~~~~~~G~d~vid~~g~~~~~~~~~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~d~~~l  166 (174)
T d1p0fa2          87 YEVICEKTNGGVDYAVECAGRIETMMNALQSTYCGSGVTVVLGLASPNERLPLDPLLLLTGRSLKGSVFGGFKGEEVSRL  166 (174)
T ss_dssp             HHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECCCCCTTCCEEECTHHHHTTCEEEECSGGGCCGGGHHHH
T ss_pred             HHHHHHhcCCCCcEEEEcCCCchHHHHHHHHHHHhcCceEEEEEecCccccccCHHHHhCCCEEEEEEeCCCCHHHHHHH
Confidence            344444 4779999999999999899999998775 9999999876656666553 35678899999854   5699999


Q ss_pred             HHHHHcCC
Q 040104           81 LEFLRSGK   88 (105)
Q Consensus        81 ~~~v~~g~   88 (105)
                      ++++.+||
T Consensus       167 idl~~~gK  174 (174)
T d1p0fa2         167 VDDYMKKK  174 (174)
T ss_dssp             HHHHHTTS
T ss_pred             HHHHHcCC
Confidence            99999986

>d1yb5a2 c.2.1.1 (A:121-294) Quinone oxidoreductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.1e-14  Score=86.00  Aligned_cols=83  Identities=25%  Similarity=0.414  Sum_probs=70.5

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc---CCCHH
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY---KNTWP   78 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~---~~~~~   78 (105)
                      +++.+++++.+ ++++|++|||+|++. ++.++++++++|+++.+|... +.++++..++.+++++.|++.+   +++++
T Consensus        83 ~~~~~~i~~~t~~~g~d~v~d~~g~~~-~~~~~~~l~~~G~iv~~G~~~-~~~~~~~~~~~k~~~i~g~~~~~~~~~~~~  160 (174)
T d1yb5a2          83 VNYIDKIKKYVGEKGIDIIIEMLANVN-LSKDLSLLSHGGRVIVVGSRG-TIEINPRDTMAKESSIIGVTLFSSTKEEFQ  160 (174)
T ss_dssp             TTHHHHHHHHHCTTCEEEEEESCHHHH-HHHHHHHEEEEEEEEECCCCS-CEEECTHHHHTTTCEEEECCGGGCCHHHHH
T ss_pred             ccHHHHhhhhhccCCceEEeecccHHH-HHHHHhccCCCCEEEEEecCC-CCCCCHHHHHHCCCEEEEEEecCCCHHHHH
Confidence            56788999999 579999999999765 999999999999999999643 4677888889999999999765   55788


Q ss_pred             HHHHHHHcC
Q 040104           79 LCLEFLRSG   87 (105)
Q Consensus        79 ~~~~~v~~g   87 (105)
                      ++++++++|
T Consensus       161 ~~~~~l~~g  169 (174)
T d1yb5a2         161 QYAAALQAG  169 (174)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888888765

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.46  E-value=9.4e-15  Score=85.89  Aligned_cols=78  Identities=14%  Similarity=0.183  Sum_probs=68.9

Q ss_pred             cCCCCcEEEEccCChH--HHHHHHHhhhcCCEEEEEcCCCCCccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCC
Q 040104           13 MGTGIDVSFDCAGFNK--TMSTALSATRAGGKVCLVGMGHHEMTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKI   89 (105)
Q Consensus        13 ~~~g~d~vid~~g~~~--~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i   89 (105)
                      ..+++|+++||+|...  .++.++++++++|+++.+|.+.++..++...++++++++.|++.+ +++++++++++++|+|
T Consensus        88 ~~~~~d~vi~~~~~~~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~~~k~~~i~Gs~~g~~~~~~e~l~li~~gkI  167 (168)
T d1piwa2          88 YFDTFDLIVVCASSLTDIDFNIMPKAMKVGGRIVSISIPEQHEMLSLKPYGLKAVSISYSALGSIKELNQLLKLVSEKDI  167 (168)
T ss_dssp             SCSCEEEEEECCSCSTTCCTTTGGGGEEEEEEEEECCCCCSSCCEEECGGGCBSCEEEECCCCCHHHHHHHHHHHHHTTC
T ss_pred             hhcccceEEEEecCCccchHHHHHHHhhccceEEEeccccccccccHHHHHhCCcEEEEEeeCCHHHHHHHHHHHHhCCC
Confidence            3468999999988654  478899999999999999998877888888999999999999887 8899999999999998


Q ss_pred             C
Q 040104           90 D   90 (105)
Q Consensus        90 ~   90 (105)
                      +
T Consensus       168 k  168 (168)
T d1piwa2         168 K  168 (168)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d1gu7a2 c.2.1.1 (A:161-349) 2,4-dienoyl-CoA reductase {Yeast (Candida tropicalis) [TaxId: 5482]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: 2,4-dienoyl-CoA reductase
species: Yeast (Candida tropicalis) [TaxId: 5482]

Probab=99.43  E-value=1.4e-13  Score=82.14  Aligned_cols=75  Identities=15%  Similarity=0.244  Sum_probs=63.7

Q ss_pred             cCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc----------CCCHHHHH
Q 040104           13 MGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY----------KNTWPLCL   81 (105)
Q Consensus        13 ~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~----------~~~~~~~~   81 (105)
                      .++++|++||++|++. +..++++|+++|+++.+|... .+.+++...+++|++++.|++..          ++.+.+++
T Consensus       104 ~g~~vdvv~D~vg~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~~~~l~  182 (189)
T d1gu7a2         104 SGGEAKLALNCVGGKS-STGIARKLNNNGLMLTYGGMSFQPVTIPTSLYIFKNFTSAGFWVTELLKNNKELKTSTLNQII  182 (189)
T ss_dssp             HTCCEEEEEESSCHHH-HHHHHHTSCTTCEEEECCCCSSCCEEECHHHHHHSCCEEEECCHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCCceEEEECCCcch-hhhhhhhhcCCcEEEEECCccCCCccCcHHHHHHCCcEEEEEEehHhhhhCHHHHHHHHHHHH
Confidence            3678999999999887 899999999999999999644 45678888889999999998653          24578899


Q ss_pred             HHHHcCC
Q 040104           82 EFLRSGK   88 (105)
Q Consensus        82 ~~v~~g~   88 (105)
                      +++++|+
T Consensus       183 ~l~~~Gk  189 (189)
T d1gu7a2         183 AWYEEGK  189 (189)
T ss_dssp             HHHHHTC
T ss_pred             HHHHcCC
Confidence            9999986

>d1v3va2 c.2.1.1 (A:113-294) Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Leukotriene b4 12-hydroxydehydrogenase/prostaglandin 15-keto reductase
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=99.42  E-value=6.7e-14  Score=83.09  Aligned_cols=84  Identities=19%  Similarity=0.258  Sum_probs=65.4

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-------CCccccchhhhhcCeEEEEeecc-
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-------HEMTVPLTPAAAREVDVVGVFRY-   73 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-------~~~~~~~~~~~~~~~~i~~~~~~-   73 (105)
                      ++..+++.+.+ ++|+|++|||+|++. ++.++++++++|+++.+|...       .+..+++..++++++++.|++.. 
T Consensus        84 ~~~~~~~~~~~~~~Gvd~v~D~vG~~~-~~~~~~~l~~~G~~v~~G~~~~~~~~~~~~~~~~~~~l~~k~~ti~g~~~~~  162 (182)
T d1v3va2          84 VNSLEEALKKASPDGYDCYFDNVGGEF-LNTVLSQMKDFGKIAICGAISVYNRMDQLPPGPSPESIIYKQLRIEGFIVYR  162 (182)
T ss_dssp             CSCHHHHHHHHCTTCEEEEEESSCHHH-HHHHGGGEEEEEEEEECCCGGGTTCTTSCCBCCCHHHHHHTTCEEEECCGGG
T ss_pred             ccHHHHHHHHhhcCCCceeEEecCchh-hhhhhhhccCCCeEEeecceeeccccccCCCCcchHHHhhcCcEEEEEEEec
Confidence            34456666666 679999999999765 999999999999999999532       12335556788999999998765 


Q ss_pred             ------CCCHHHHHHHHHcC
Q 040104           74 ------KNTWPLCLEFLRSG   87 (105)
Q Consensus        74 ------~~~~~~~~~~v~~g   87 (105)
                            .+.++++++|+++|
T Consensus       163 ~~~~~~~~~~~~l~~~i~~G  182 (182)
T d1v3va2         163 WQGDVREKALRDLMKWVLEG  182 (182)
T ss_dssp             CCHHHHHHHHHHHHHHHHTT
T ss_pred             cChHHHHHHHHHHHHHHhCc
Confidence                  24578888999886

>d1uufa2 c.2.1.1 (A:145-312) Hypothetical protein YahK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YahK
species: Escherichia coli [TaxId: 562]

Probab=99.41  E-value=3.4e-14  Score=83.41  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=63.8

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCC-ccccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHE-MTVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGKI   89 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~-~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~i   89 (105)
                      .+++|++|||+|++..++.++++++++|+++.+|.+..+ ..++...++++++++.|++.+ +.+++++++++++++|
T Consensus        91 ~~~~D~vid~~g~~~~~~~~~~~l~~~G~iv~~G~~~~~~~~~~~~~l~~k~~~i~Gs~~~~~~d~~e~l~l~a~~~I  168 (168)
T d1uufa2          91 LKSFDFILNTVAAPHNLDDFTTLLKRDGTMTLVGAPATPHKSPEVFNLIMKRRAIAGSMIGGIPETQEMLDFCAEHGI  168 (168)
T ss_dssp             TTCEEEEEECCSSCCCHHHHHTTEEEEEEEEECCCC-------CHHHHHTTTCEEEECCSCCHHHHHHHHHHHHHHTC
T ss_pred             cCCCceeeeeeecchhHHHHHHHHhcCCEEEEeccCCCCcccccHHHHHHCCcEEEEEeecCHHHHHHHHHHHHHcCC
Confidence            468999999999987899999999999999999986543 456777888999999999887 8899999999999875

>d1cdoa2 c.2.1.1 (A:165-339) Alcohol dehydrogenase {Cod (Gadus callarias) [TaxId: 8053]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Cod (Gadus callarias) [TaxId: 8053]

Probab=99.39  E-value=5.4e-13  Score=78.52  Aligned_cols=83  Identities=20%  Similarity=0.206  Sum_probs=65.5

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCE-EEEEcCCCCCccccchhhhhcCeEEEEeecc----CCCHHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGK-VCLVGMGHHEMTVPLTPAAAREVDVVGVFRY----KNTWPL   79 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~-~v~~g~~~~~~~~~~~~~~~~~~~i~~~~~~----~~~~~~   79 (105)
                      .+++++.+ ++|+|++||++|+..+++.++.+++++|. ++.+|.+......+...++.+++++.|++..    ++++++
T Consensus        87 ~~~~~~~~~~~G~d~vid~~G~~~~~~~a~~~~~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~d~~~  166 (175)
T d1cdoa2          87 ISQVLSKMTNGGVDFSLECVGNVGVMRNALESCLKGWGVSVLVGWTDLHDVATRPIQLIAGRTWKGSMFGGFKGKDGVPK  166 (175)
T ss_dssp             HHHHHHHHHTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCSSSCEEECHHHHHTTCEEEECSGGGCCHHHHHHH
T ss_pred             HHHHHHhhccCCcceeeeecCCHHHHHHHHHHhhCCCcceeEEEecCCcccCccHHHHHCCcEEEEEEEeCCcHHHHHHH
Confidence            45556666 77999999999999889999999888754 4555555555556666777889999999754    578999


Q ss_pred             HHHHHHcCC
Q 040104           80 CLEFLRSGK   88 (105)
Q Consensus        80 ~~~~v~~g~   88 (105)
                      +++++++||
T Consensus       167 ~i~l~~~gK  175 (175)
T d1cdoa2         167 MVKAYLDKK  175 (175)
T ss_dssp             HHHHHHTTS
T ss_pred             HHHHHHcCC
Confidence            999999986

>d1xa0a2 c.2.1.1 (A:119-294) B. subtilis YhfP homologue {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: B. subtilis YhfP homologue
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.37  E-value=4.1e-13  Score=79.46  Aligned_cols=80  Identities=23%  Similarity=0.307  Sum_probs=63.3

Q ss_pred             HHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc---CCCHHHHHHHHH
Q 040104           11 KAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY---KNTWPLCLEFLR   85 (105)
Q Consensus        11 ~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~v~   85 (105)
                      +.+ ++++|+|||++|+.. +..++++|+++|+++.+|... ...++++..++.|++++.|....   .+...++.+.++
T Consensus        92 ~~~~~~gvD~vid~vgg~~-~~~~l~~l~~~Griv~~G~~~g~~~~~~~~~~~~k~~~i~Gv~~~~~~~~~~~~~~~~la  170 (176)
T d1xa0a2          92 RPLDKQRWAAAVDPVGGRT-LATVLSRMRYGGAVAVSGLTGGAEVPTTVHPFILRGVSLLGIDSVYCPMDLRLRIWERLA  170 (176)
T ss_dssp             --CCSCCEEEEEECSTTTT-HHHHHHTEEEEEEEEECSCCSSSCCCCCSHHHHHTTCEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             HHhhccCcCEEEEcCCchh-HHHHHHHhCCCceEEEeecccCcccCCCHHHHHHCCcEEEEEeCCcCCHHHHHHHHHHHh
Confidence            344 679999999999987 999999999999999999754 45678899999999999996433   355566666664


Q ss_pred             cCCCCCC
Q 040104           86 SGKIDIK   92 (105)
Q Consensus        86 ~g~i~~~   92 (105)
                       |+++|+
T Consensus       171 -g~lkP~  176 (176)
T d1xa0a2         171 -GDLKPD  176 (176)
T ss_dssp             -TTTCCC
T ss_pred             -cccCCC
Confidence             888653

>d2fzwa2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=76.60  Aligned_cols=84  Identities=24%  Similarity=0.139  Sum_probs=64.7

Q ss_pred             HHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC--CccccchhhhhcCeEEEEeecc----CCCHH
Q 040104            5 EVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH--EMTVPLTPAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         5 ~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~--~~~~~~~~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      ..+.+++.+++|+|++||++|++.+++.++.+++++|+++.++....  ....+....+.+++++.|++..    +++++
T Consensus        87 ~~~~~~~~~~~g~D~vid~~G~~~~~~~~~~~~~~g~~~~~v~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~d~~  166 (176)
T d2fzwa2          87 IQEVLIEMTDGGVDYSFECIGNVKVMRAALEACHKGWGVSVVVGVAASGEEIATRPFQLVTGRTWKGTAFGGWKSVESVP  166 (176)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHTBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHHHHHH
T ss_pred             HHHHHHHHcCCCCcEeeecCCCHHHHHHHHHhhcCCceeEEEEeeccccccccccHHHHHCCCEEEEEeeeCCcHHHHHH
Confidence            44555565678999999999999989999999999988887765432  2233344445688999999865    46789


Q ss_pred             HHHHHHHcCC
Q 040104           79 LCLEFLRSGK   88 (105)
Q Consensus        79 ~~~~~v~~g~   88 (105)
                      ++++++++||
T Consensus       167 ~li~l~~~GK  176 (176)
T d2fzwa2         167 KLVSEYMSKK  176 (176)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHcCC
Confidence            9999999986

>d1kola2 c.2.1.1 (A:161-355) Formaldehyde dehydrogenase {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Formaldehyde dehydrogenase
species: Pseudomonas putida [TaxId: 303]

Probab=99.35  E-value=9.4e-13  Score=78.99  Aligned_cols=86  Identities=15%  Similarity=0.207  Sum_probs=67.4

Q ss_pred             hHHHHHHHHHc-CCCCcEEEEccCCh---------------HHHHHHHHhhhcCCEEEEEcCCCCC-------------c
Q 040104            3 AEEVEKIDKAM-GTGIDVSFDCAGFN---------------KTMSTALSATRAGGKVCLVGMGHHE-------------M   53 (105)
Q Consensus         3 ~~~~~~~~~~~-~~g~d~vid~~g~~---------------~~~~~~~~~l~~~G~~v~~g~~~~~-------------~   53 (105)
                      +++.+++.++| +.|+|++|||+|.+               .+++.++++++++|+++.+|.+.+.             .
T Consensus        80 ~~~~~~i~~~t~g~g~D~vid~vG~~~~~~~~~~~~~~~~~~~l~~~~~~~r~gG~v~~~G~~~~~~~~~~~~~~~~~~~  159 (195)
T d1kola2          80 TPLHEQIAALLGEPEVDCAVDAVGFEARGHGHEGAKHEAPATVLNSLMQVTRVAGKIGIPGLYVTEDPGAVDAAAKIGSL  159 (195)
T ss_dssp             SCHHHHHHHHHSSSCEEEEEECCCTTCBCSSTTGGGSBCTTHHHHHHHHHEEEEEEEEECSCCCSCCTTCSSHHHHTTCC
T ss_pred             cCHHHHHHHHhCCCCcEEEEECccccccCCcccceeecCcHHHHHHHHHHHhcCCEEEEeeecCCCcccchhhhhhcCce
Confidence            45678888898 56999999999943               5699999999999999999985432             1


Q ss_pred             cccchhhhhcCeEEEEeecc-CCCHHHHHHHHHcCC
Q 040104           54 TVPLTPAAAREVDVVGVFRY-KNTWPLCLEFLRSGK   88 (105)
Q Consensus        54 ~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~v~~g~   88 (105)
                      .+++..++.|++++.+.... +..+++++++|.++|
T Consensus       160 ~~~~~~~~~k~~~i~~g~~~v~~~~~~Ll~~I~~~k  195 (195)
T d1kola2         160 SIRFGLGWAKSHSFHTGQTPVMKYNRALMQAIMWDR  195 (195)
T ss_dssp             CCCHHHHHHTTCEEEESSCCHHHHHHHHHHHHHTTS
T ss_pred             eeeHHHHHhhcceeccCCCchHHHHHHHHHHHHcCC
Confidence            23444456789998776555 677899999998875

>d1vj1a2 c.2.1.1 (A:125-311) Putative zinc-binding alcohol dehydrogenase {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Putative zinc-binding alcohol dehydrogenase
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=4.3e-13  Score=79.93  Aligned_cols=85  Identities=19%  Similarity=0.258  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHcCCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC---Cccc--c-----chhhhhcCeEEEEeec
Q 040104            3 AEEVEKIDKAMGTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH---EMTV--P-----LTPAAAREVDVVGVFR   72 (105)
Q Consensus         3 ~~~~~~~~~~~~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~---~~~~--~-----~~~~~~~~~~i~~~~~   72 (105)
                      +++.+.+++.+++|+|++||++|++. ++.++++++++|+++.+|...+   ..+.  +     ...+..+++++.|+..
T Consensus        87 ~~~~~~~~~~~~~GvDvv~D~vGg~~-~~~~~~~l~~~G~iv~~G~~s~~~~~~~~~~~~~~~~~~~~~~k~i~~~g~~~  165 (187)
T d1vj1a2          87 GNVAEQLREACPGGVDVYFDNVGGDI-SNTVISQMNENSHIILCGQISQYNKDVPYPPPLPPAVEAIRKERNITRERFTV  165 (187)
T ss_dssp             SCHHHHHHHHCTTCEEEEEESSCHHH-HHHHHTTEEEEEEEEEC------------CCCCCHHHHHHHHHTTCEEEECCG
T ss_pred             hhHHHHHHHHhccCceEEEecCCchh-HHHHhhhccccccEEEeccccccccccccCCchHHHHHHHHHhcceEEEEeEe
Confidence            45778888888889999999999876 9999999999999999996321   1111  1     1123568999998765


Q ss_pred             c------CCCHHHHHHHHHcCC
Q 040104           73 Y------KNTWPLCLEFLRSGK   88 (105)
Q Consensus        73 ~------~~~~~~~~~~v~~g~   88 (105)
                      .      .+.++++.+|+.+|+
T Consensus       166 ~~~~~~~~e~~~~l~~~i~~Gk  187 (187)
T d1vj1a2         166 LNYKDKFEPGILQLSQWFKEGK  187 (187)
T ss_dssp             GGCGGGHHHHHHHHHHHHHHTS
T ss_pred             cchHHHHHHHHHHHHHHHHCcC
Confidence            3      345778889999885

>d2jhfa2 c.2.1.1 (A:164-339) Alcohol dehydrogenase {Horse (Equus caballus) [TaxId: 9796]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Horse (Equus caballus) [TaxId: 9796]

Probab=99.32  E-value=2.3e-12  Score=75.93  Aligned_cols=83  Identities=20%  Similarity=0.187  Sum_probs=62.0

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEc-CCCCCccc-cchhhhhcCeEEEEeecc----CCCHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVG-MGHHEMTV-PLTPAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g-~~~~~~~~-~~~~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      .+++.+.+ ++|+|++||++|.+.+++.++.+++++|..+.++ .++..... ....++.+++++.|++..    +++++
T Consensus        87 ~~~~~~~~~~~G~D~vid~~G~~~~~~~a~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~~~~  166 (176)
T d2jhfa2          87 IQEVLTEMSNGGVDFSFEVIGRLDTMVTALSCCQEAYGVSVIVGVPPDSQNLSMNPMLLLSGRTWKGAIFGGFKSKDSVP  166 (176)
T ss_dssp             HHHHHHHHTTSCBSEEEECSCCHHHHHHHHHHBCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHHHHHH
T ss_pred             HHHHHHHHhcCCCCEEEecCCchhHHHHHHHHHhcCCcceEEecCCCCcccccccHHHHhCCCEEEEEEEeCCCHHHHHH
Confidence            44444445 7799999999999998999999999985555554 44433333 334566799999999754    67899


Q ss_pred             HHHHHHHcCC
Q 040104           79 LCLEFLRSGK   88 (105)
Q Consensus        79 ~~~~~v~~g~   88 (105)
                      ++++++.+||
T Consensus       167 ~li~~~~~GK  176 (176)
T d2jhfa2         167 KLVADFMAKK  176 (176)
T ss_dssp             HHHHHHHTTS
T ss_pred             HHHHHHHCcC
Confidence            9999999986

>d1d1ta2 c.2.1.1 (A:163-338) Alcohol dehydrogenase {Human (Homo sapiens), different isozymes [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Alcohol dehydrogenase
species: Human (Homo sapiens), different isozymes [TaxId: 9606]

Probab=99.25  E-value=5.6e-12  Score=74.42  Aligned_cols=81  Identities=16%  Similarity=0.217  Sum_probs=63.1

Q ss_pred             HHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcC-CEEEEEcCCCCCccccch-hhhhcCeEEEEeecc----CCCHH
Q 040104            6 VEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAG-GKVCLVGMGHHEMTVPLT-PAAAREVDVVGVFRY----KNTWP   78 (105)
Q Consensus         6 ~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~-G~~v~~g~~~~~~~~~~~-~~~~~~~~i~~~~~~----~~~~~   78 (105)
                      .+.+.+.+ ++|+|++||++|.+.++..++..+.++ |+++.+|.+.....+.+. .+.++++++.|++..    +.+++
T Consensus        88 ~~~~~~~~~g~G~d~vi~~~g~~~~~~~a~~~~~~~~G~~v~vG~~~~~~~~~~~~~~~~~~~~i~Gs~~G~~~~~~dip  167 (176)
T d1d1ta2          88 ISEVLSEMTGNNVGYTFEVIGHLETMIDALASCHMNYGTSVVVGVPPSAKMLTYDPMLLFTGRTWKGCVFGGLKSRDDVP  167 (176)
T ss_dssp             HHHHHHHHHTSCCCEEEECSCCHHHHHHHHTTSCTTTCEEEECSCCCTTCCEEECTHHHHTTCEEEECSGGGCCHHHHHH
T ss_pred             HHHHHHHhccccceEEEEeCCchHHHHHHHHHhhcCCeEEEEEEccccccccCCCHHHHhCCCEEEEEEEeCCCcHHHHH
Confidence            45566666 789999999999998888888888666 999999987765555443 345678999999864    57888


Q ss_pred             HHHHHHHc
Q 040104           79 LCLEFLRS   86 (105)
Q Consensus        79 ~~~~~v~~   86 (105)
                      ++++++.+
T Consensus       168 ~li~~~~~  175 (176)
T d1d1ta2         168 KLVTEFLA  175 (176)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhC
Confidence            88888764

>d1tt7a2 c.2.1.1 (A:128-294) Hypothetical protein YhfP {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhfP
species: Bacillus subtilis [TaxId: 1423]

Probab=99.14  E-value=6.7e-12  Score=73.57  Aligned_cols=74  Identities=19%  Similarity=0.275  Sum_probs=58.4

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc---CCCHHHHHHHHHcCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY---KNTWPLCLEFLRSGKI   89 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~v~~g~i   89 (105)
                      ++++|++||++|+.. +..++++|+++|+++.+|... .+.+++...++++++++.|+...   .+...++.+.++ +.+
T Consensus        88 ~~gvd~vid~vgg~~-~~~~~~~l~~~G~iv~~G~~~g~~~~~~~~~l~~k~~~i~G~~~~~~~~~~~~~~~~~l~-~~L  165 (167)
T d1tt7a2          88 KQQWQGAVDPVGGKQ-LASLLSKIQYGGSVAVSGLTGGGEVPATVYPFILRGVSLLGIDSVYCPMDVRAAVWERMS-SDL  165 (167)
T ss_dssp             CCCEEEEEESCCTHH-HHHHHTTEEEEEEEEECCCSSCSCEEECSHHHHTSCCEEEECCSSSCCHHHHHHHHHHTT-TTS
T ss_pred             CCCceEEEecCcHHH-HHHHHHHhccCceEEEeeccCCCcccCCHHHHHHCCcEEEEEecCCCCHHHHHHHHHHHH-hcC
Confidence            579999999999987 999999999999999999765 45678888999999999997654   223334444443 445

>d1iz0a2 c.2.1.1 (A:99-269) Quinone oxidoreductase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Thermus thermophilus [TaxId: 274]

Probab=99.13  E-value=1.8e-11  Score=71.80  Aligned_cols=63  Identities=19%  Similarity=0.410  Sum_probs=48.7

Q ss_pred             HHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeecc
Q 040104            9 IDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFRY   73 (105)
Q Consensus         9 ~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~~   73 (105)
                      ..+.+ ++|+|++|||+| +. ++.++++++++|+++.+|... .+.+++...++.|++++.|++..
T Consensus        83 ~~~~~~~~g~D~v~d~~G-~~-~~~~~~~l~~~G~~v~~G~~~g~~~~~~~~~~~~k~~~i~g~~~~  147 (171)
T d1iz0a2          83 PERAKAWGGLDLVLEVRG-KE-VEESLGLLAHGGRLVYIGAAEGEVAPIPPLRLMRRNLAVLGFWLT  147 (171)
T ss_dssp             HHHHHHTTSEEEEEECSC-TT-HHHHHTTEEEEEEEEEC-------CCCCTTHHHHTTCEEEECCHH
T ss_pred             hhhhhccccccccccccc-hh-HHHHHHHHhcCCcEEEEeCCCCCCCCccHHHHHHCCcEEEEEeCc
Confidence            34445 679999999988 34 899999999999999999765 45578888889999999999765

>d1qora2 c.2.1.1 (A:113-291) Quinone oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Quinone oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=99.06  E-value=1.1e-10  Score=68.54  Aligned_cols=85  Identities=16%  Similarity=0.219  Sum_probs=60.3

Q ss_pred             hhHHHHHHHHHc-CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhc-CeEEEEe-----ecc
Q 040104            2 IAEEVEKIDKAM-GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAR-EVDVVGV-----FRY   73 (105)
Q Consensus         2 ~~~~~~~~~~~~-~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~-~~~i~~~-----~~~   73 (105)
                      .+++.++++++| |+++|+++|++|++. +..++.+++++|+++.+|... .+..++...+..+ .+.+...     ...
T Consensus        82 ~~d~~~~v~~~t~g~g~d~v~d~~g~~~-~~~~~~~l~~~G~~v~~g~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  160 (179)
T d1qora2          82 EEDLVERLKEITGGKKVRVVYDSVGRDT-WERSLDCLQRRGLMVSFGNSSGAVTGVNLGILNQKGSLYVTRPSLQGYITT  160 (179)
T ss_dssp             TSCHHHHHHHHTTTCCEEEEEECSCGGG-HHHHHHTEEEEEEEEECCCTTCCCCCBCTHHHHHTTSCEEECCCHHHHCCS
T ss_pred             CCCHHHHHHHHhCCCCeEEEEeCccHHH-HHHHHHHHhcCCeeeecccccCCccccchhhhhccceEEEEeeEEeeecCC
Confidence            357889999999 579999999999876 999999999999999998654 3344554444332 3333221     111


Q ss_pred             ----CCCHHHHHHHHHcC
Q 040104           74 ----KNTWPLCLEFLRSG   87 (105)
Q Consensus        74 ----~~~~~~~~~~v~~g   87 (105)
                          .+.+.++++++++|
T Consensus       161 ~~~~~~~~~~l~~lv~~G  178 (179)
T d1qora2         161 REELTEASNELFSLIASG  178 (179)
T ss_dssp             HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHCc
Confidence                23456788888887

>d1o89a2 c.2.1.1 (A:116-292) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=98.65  E-value=1.5e-08  Score=59.57  Aligned_cols=57  Identities=21%  Similarity=0.286  Sum_probs=49.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC-CCccccchhhhhcCeEEEEeec
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH-HEMTVPLTPAAAREVDVVGVFR   72 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~-~~~~~~~~~~~~~~~~i~~~~~   72 (105)
                      ...|.++|++|++. +..++++++++|+++.+|... ...+++..+++.|++++.|+..
T Consensus        95 ~~~~~vvD~Vgg~~-~~~~l~~l~~~Griv~~G~~~~~~~~~~~~~~~~k~~~i~G~~~  152 (177)
T d1o89a2          95 QVWAGAIDTVGDKV-LAKVLAQMNYGGCVAACGLAGGFTLPTTVMPFILRNVRLQGVDS  152 (177)
T ss_dssp             CCEEEEEESSCHHH-HHHHHHTEEEEEEEEECCCTTCSCCCCCSHHHHHHCCEEEECCS
T ss_pred             hcCCeeEEEcchHH-HHHHHHHhccccceEeecccCCccccccHHHHHHCCCeEEEEec
Confidence            45799999999987 999999999999999999754 3566788889999999999754

>d2czca2 c.2.1.3 (A:1-139,A:302-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=95.46  E-value=0.012  Score=33.52  Aligned_cols=36  Identities=17%  Similarity=0.098  Sum_probs=32.0

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      ++|+|+||+|.-...+.+-..+..|.+.|+.+.+..
T Consensus        79 ~vDvViEcTG~f~~~~~~~~hl~~G~k~Vi~s~~~~  114 (172)
T d2czca2          79 KVDIIVDATPGGIGAKNKPLYEKAGVKAIFQGGEKA  114 (172)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHHTCEEEECTTSCG
T ss_pred             cCCEEEECCCCCCCHHHHHHHHHcCCCEEEECCCCc
Confidence            799999999998888999999999999999887653

>d1dssg1 c.2.1.3 (G:1-148,G:313-334) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {South China Sea lobster (Palinurus versicolor) [TaxId: 150436]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: South China Sea lobster (Palinurus versicolor) [TaxId: 150436]

Probab=95.24  E-value=0.014  Score=33.32  Aligned_cols=70  Identities=11%  Similarity=0.191  Sum_probs=44.3

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCCCccccch---h-hhhcCeEEEEeecc-CCCHHHHHHHHH
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHHEMTVPLT---P-AAAREVDVVGVFRY-KNTWPLCLEFLR   85 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~~~~~~~~---~-~~~~~~~i~~~~~~-~~~~~~~~~~v~   85 (105)
                      |+|+|+||+|.-...+.+...++.|..-|++..|....+.-+.   . .+-.+.++...... ...+..+++.+.
T Consensus        87 gvD~ViEcTG~f~~~~~~~~hl~~gakkViisaP~~d~~~iV~GVN~~~~~~~~~IIS~aSCTtn~laP~~k~l~  161 (169)
T d1dssg1          87 GAEYIVESTGVFTTIEKASAHFKGGAKKVIISAPSADAPMFVCGVNLEKYSKDMKVVSNASNEFGYSQRVIDLIK  161 (169)
T ss_dssp             TCCEEEECSSSCCSHHHHGGGGTTTCSEEEESSCCSSSCBCCTTTSGGGCCTTCCEEECCCTTHHHHHHHHHHHH
T ss_pred             CCCEEEecCceEcCHHHHHHHHhcCCceEeecCCccccceeeecccccccCCCCCEEEChhHHHHHHHHHHHHHH
Confidence            7999999999987788899999999888888766533221111   1 12234455543333 455555555544

>d1obfo1 c.2.1.3 (O:1-152,O:315-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Achromobacter xylosoxidans [TaxId: 85698]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Achromobacter xylosoxidans [TaxId: 85698]

Probab=94.61  E-value=0.019  Score=32.76  Aligned_cols=36  Identities=25%  Similarity=0.452  Sum_probs=30.6

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      -|+|+|+||+|.-...+.+...|..|..-|++..|.
T Consensus        90 ~gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  125 (173)
T d1obfo1          90 LKVDVVLECTGFFTTKEKAGAHIKGGAKKVIISAPG  125 (173)
T ss_dssp             TTCSEEEECSSSCCSHHHHHHHHHHTCSEEEESSCC
T ss_pred             cccceEEEecccccCHHHHHHHhccCCcceEEecCC
Confidence            389999999998766788999999998888887654

>d3cmco1 c.2.1.3 (O:0-148,O:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca 1503 [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Bacillus stearothermophilus, nca 1503 [TaxId: 1422]

Probab=94.52  E-value=0.018  Score=32.84  Aligned_cols=36  Identities=19%  Similarity=0.311  Sum_probs=30.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      ++|+|+||+|.-...+.+...+..|..-|++..|..
T Consensus        88 ~vDiViEcTG~f~t~~~~~~hl~~gakkViiSap~~  123 (171)
T d3cmco1          88 GVDIVVESTGRFTKREDAAKHLEAGAKKVIISAPAK  123 (171)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCcEEEEecCccCCHHHHHHHHhCCCceEEEecccc
Confidence            799999999997778888899998877777766543

>d1hdgo1 c.2.1.3 (O:1-148,O:313-331) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermotoga maritima [TaxId: 2336]

Probab=94.41  E-value=0.02  Score=32.59  Aligned_cols=36  Identities=19%  Similarity=0.312  Sum_probs=30.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|+|+||+|.-...+.+...+..|..-|++..|..
T Consensus        89 gvD~ViEcTG~f~t~~~~~~hl~~GakkViiSAP~k  124 (169)
T d1hdgo1          89 GVDFVIESTGVFRNREKAELHLQAGAKKVIITAPAK  124 (169)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCCB
T ss_pred             CCCEEEEecceeccccchhhhccCCCceEEEecccC
Confidence            799999999997768889999999877777776653

>d1cf2o1 c.2.1.3 (O:1-138,O:304-336) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Methanothermus fervidus [TaxId: 2180]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Methanothermus fervidus [TaxId: 2180]

Probab=94.35  E-value=0.045  Score=31.09  Aligned_cols=35  Identities=17%  Similarity=0.150  Sum_probs=29.4

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+|+||+|.-...+.+-..+..|-+.+..+.+.
T Consensus        78 ~vDvViEcTG~f~~~~~~~~hl~~G~K~vi~~~~~  112 (171)
T d1cf2o1          78 EADIVIDCTPEGIGAKNLKMYKEKGIKAIFQGGEK  112 (171)
T ss_dssp             TCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             CCCEEEEccCCCCCHHHHHHHHHcCCCEEEECCCC
Confidence            69999999999877888888998888877776554

>d1gado1 c.2.1.3 (O:0-148,O:313-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Escherichia coli [TaxId: 562]

Probab=94.31  E-value=0.027  Score=31.96  Aligned_cols=36  Identities=28%  Similarity=0.290  Sum_probs=30.7

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      |+|+|+||+|.-...+.+...+..|..-|++..|..
T Consensus        88 gvDiViEcTG~f~t~~~~~~hl~~gakkViiSaP~~  123 (166)
T d1gado1          88 GVDVVAEATGLFLTDETARKHITAGAKKVVMTGPSK  123 (166)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCCS
T ss_pred             CCCEEEEccccccCHHHHHHHhcCCCceEEeecccc
Confidence            799999999997778889999999988888876543

>d1b7go1 c.2.1.3 (O:1-138,O:301-340) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Archaeon Sulfolobus solfataricus [TaxId: 2287]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Archaeon Sulfolobus solfataricus [TaxId: 2287]

Probab=93.34  E-value=0.057  Score=30.85  Aligned_cols=35  Identities=9%  Similarity=-0.066  Sum_probs=27.4

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+|+||+|.-...+.+-.+++.|-+.++.|...
T Consensus        77 ~vDiViecTG~f~~~e~a~~hl~~G~KvIi~~~~~  111 (178)
T d1b7go1          77 TSDIVVDTTPNGVGAQYKPIYLQLQRNAIFQGGEK  111 (178)
T ss_dssp             HCSEEEECCSTTHHHHHHHHHHHTTCEEEECTTSC
T ss_pred             cCCEEEECCCCcCCHHHHHHHHHcCCEEEEECCCC
Confidence            58999999999777788888888776766665433

>d2g82a1 c.2.1.3 (A:1-148,A:311-330) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Thermus aquaticus [TaxId: 271]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Thermus aquaticus [TaxId: 271]

Probab=93.21  E-value=0.034  Score=31.54  Aligned_cols=36  Identities=17%  Similarity=0.291  Sum_probs=30.4

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      .|+|+|+||+|.-...+.+...++.|..-|++..|.
T Consensus        85 ~gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  120 (168)
T d2g82a1          85 AGVGVVIESTGVFTDADKAKAHLEGGAKKVIITAPA  120 (168)
T ss_dssp             GTEEEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             cCCceeEeccccccchHHhhhhhccccceeeecccc
Confidence            379999999999877888999999888777777654

>d2b4ro1 c.2.1.3 (O:4-152,O:319-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=93.17  E-value=0.046  Score=30.93  Aligned_cols=35  Identities=23%  Similarity=0.258  Sum_probs=29.9

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ++|+|+||+|.-...+.+...+..|..-|++..|.
T Consensus        88 gvdiViEcTG~f~~~~~~~~hl~~gakkViiSAP~  122 (166)
T d2b4ro1          88 QVDVVCESTGVFLTKELASSHLKGGAKKVIMSAPP  122 (166)
T ss_dssp             TCSEEEECSSSCCSHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCCEEEEecccccchhhhhhhhccCCCEEEEeccc
Confidence            79999999999777888889999998778876654

>d1rm4a1 c.2.1.3 (A:1-148,A:313-333) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=93.14  E-value=0.051  Score=30.93  Aligned_cols=35  Identities=26%  Similarity=0.276  Sum_probs=29.1

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|+|+||+|.-...+.+...|..|..-|++..|.
T Consensus        90 gvDiViEcTG~f~~~~~~~~hl~~GakkViiSAP~  124 (172)
T d1rm4a1          90 GIDLVIEGTGVFVDRDGAGKHLQAGAKKVLITAPG  124 (172)
T ss_dssp             TCCEEEECSSSCCBHHHHHHHHHTTCSCEEESSCC
T ss_pred             CCCEEEecCceEccHHHHHHHHhcCCceEEeeccc
Confidence            79999999999666888888999998777776654

>d1u8fo1 c.2.1.3 (O:3-151,O:316-335) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Human(Homo sapiens), liver isoform [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Human(Homo sapiens), liver isoform [TaxId: 9606]

Probab=92.92  E-value=0.055  Score=30.71  Aligned_cols=37  Identities=19%  Similarity=0.286  Sum_probs=30.6

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCCC
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGHH   51 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~~   51 (105)
                      -++|+|+||+|.-...+.+...+..|..-|++..|..
T Consensus        88 ~~vDiViEcTG~f~~~~~~~~hl~~gakkViiSaP~~  124 (169)
T d1u8fo1          88 AGAEYVVESTGVFTTMEKAGAHLQGGAKRVIISAPSA  124 (169)
T ss_dssp             TTCCEEEECSSSCCSHHHHGGGGGGTCSEEEESSCCS
T ss_pred             cCCCEEEEecceeccHHHHHHHHhcCCceEeeccccc
Confidence            3899999999997767888888999988888876553

>d1k3ta1 c.2.1.3 (A:1-164,A:334-359) Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Glyceraldehyde-3-phosphate dehydrogenase (GAPDH)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=92.74  E-value=0.051  Score=31.41  Aligned_cols=35  Identities=14%  Similarity=0.331  Sum_probs=29.7

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      |+|+|+||+|.-...+.+...+..|..-|++..|.
T Consensus       103 gvDiViEcTG~f~~~~~a~~hl~~GakkViiSAP~  137 (190)
T d1k3ta1         103 GVEYVIESTGLFTAKAAAEGHLRGGARKVVISAPA  137 (190)
T ss_dssp             TCCEEEECSSSCCBHHHHTHHHHTTCSEEEESSCC
T ss_pred             CCcEEEEecccccccccchhhcccCcceeeeccCC
Confidence            89999999998777888999999998888886654

>d1dl5a1 c.66.1.7 (A:1-213) Protein-L-isoaspartyl O-methyltransferase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Thermotoga maritima [TaxId: 2336]

Probab=88.03  E-value=0.076  Score=30.94  Aligned_cols=32  Identities=25%  Similarity=0.406  Sum_probs=25.1

Q ss_pred             CCCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           15 TGIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        15 ~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      +.+|+|+.+.+-....+..++.|+|||+++..
T Consensus       143 ~~fD~I~~~~~~~~~p~~l~~~LkpGG~lv~p  174 (213)
T d1dl5a1         143 SPYDVIFVTVGVDEVPETWFTQLKEGGRVIVP  174 (213)
T ss_dssp             CCEEEEEECSBBSCCCHHHHHHEEEEEEEEEE
T ss_pred             cchhhhhhhccHHHhHHHHHHhcCCCcEEEEE
Confidence            35899998766655457788999999999873

>d1i1na_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.58  E-value=0.088  Score=30.98  Aligned_cols=31  Identities=16%  Similarity=0.158  Sum_probs=25.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      .+|+|+-+.+.+...+..++.|++||+++..
T Consensus       150 ~fD~I~~~~~~~~ip~~l~~~LkpGG~LV~p  180 (224)
T d1i1na_         150 PYDAIHVGAAAPVVPQALIDQLKPGGRLILP  180 (224)
T ss_dssp             CEEEEEECSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hhhhhhhhcchhhcCHHHHhhcCCCcEEEEE
Confidence            5899888766666567889999999999874

>d1yb2a1 c.66.1.13 (A:6-255) Hypothetical protein Ta0852 {Thermoplasma acidophilum [TaxId: 2303]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein Ta0852
species: Thermoplasma acidophilum [TaxId: 2303]

Probab=87.45  E-value=0.15  Score=30.58  Aligned_cols=33  Identities=9%  Similarity=-0.075  Sum_probs=25.3

Q ss_pred             CCCcEEEEccCC-hHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      ..+|.|+--.+. ...+..+.++|+|||+++.+.
T Consensus       153 ~~fD~V~ld~p~p~~~l~~~~~~LKpGG~lv~~~  186 (250)
T d1yb2a1         153 QMYDAVIADIPDPWNHVQKIASMMKPGSVATFYL  186 (250)
T ss_dssp             CCEEEEEECCSCGGGSHHHHHHTEEEEEEEEEEE
T ss_pred             ceeeeeeecCCchHHHHHHHHHhcCCCceEEEEe
Confidence            458877743444 446899999999999999874

>d1i9ga_ c.66.1.13 (A:) Probable methyltransferase Rv2118c {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Probable methyltransferase Rv2118c
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=84.34  E-value=0.43  Score=28.74  Aligned_cols=33  Identities=12%  Similarity=-0.011  Sum_probs=25.3

Q ss_pred             CCCcEEEEccCC-hHHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGF-NKTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~-~~~~~~~~~~l~~~G~~v~~g   47 (105)
                      +.+|.||--.+. ...+..+.++|++||+++.+-
T Consensus       167 ~~fDaV~ldlp~P~~~l~~~~~~LkpGG~lv~~~  200 (264)
T d1i9ga_         167 GSVDRAVLDMLAPWEVLDAVSRLLVAGGVLMVYV  200 (264)
T ss_dssp             TCEEEEEEESSCGGGGHHHHHHHEEEEEEEEEEE
T ss_pred             CCcceEEEecCCHHHHHHHHHhccCCCCEEEEEe
Confidence            358876654555 346889999999999999874

>d1o54a_ c.66.1.13 (A:) Hypothetical protein TM0748 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: tRNA(1-methyladenosine) methyltransferase-like
domain: Hypothetical protein TM0748
species: Thermotoga maritima [TaxId: 2336]

Probab=83.28  E-value=0.5  Score=28.41  Aligned_cols=33  Identities=18%  Similarity=0.222  Sum_probs=26.0

Q ss_pred             CCCcEEEEccCCh-HHHHHHHHhhhcCCEEEEEc
Q 040104           15 TGIDVSFDCAGFN-KTMSTALSATRAGGKVCLVG   47 (105)
Q Consensus        15 ~g~d~vid~~g~~-~~~~~~~~~l~~~G~~v~~g   47 (105)
                      ..+|.|+--.+.+ ..++.+.++|+|||+++.+.
T Consensus       171 ~~~D~V~~d~p~p~~~l~~~~~~LKpGG~lv~~~  204 (266)
T d1o54a_         171 KDVDALFLDVPDPWNYIDKCWEALKGGGRFATVC  204 (266)
T ss_dssp             CSEEEEEECCSCGGGTHHHHHHHEEEEEEEEEEE
T ss_pred             cceeeeEecCCCHHHHHHHHHhhcCCCCEEEEEe
Confidence            3578777656664 46899999999999999874

>d1vbfa_ c.66.1.7 (A:) Protein-L-isoaspartyl O-methyltransferase {Sulfolobus tokodaii [TaxId: 111955]}

class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Protein-L-isoaspartyl O-methyltransferase
domain: Protein-L-isoaspartyl O-methyltransferase
species: Sulfolobus tokodaii [TaxId: 111955]

Probab=83.05  E-value=0.19  Score=29.54  Aligned_cols=31  Identities=16%  Similarity=0.120  Sum_probs=24.5

Q ss_pred             CCcEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           16 GIDVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        16 g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      .+|.|+-+.+.+......++.|++||+++..
T Consensus       134 pfD~Iiv~~a~~~ip~~l~~qLk~GGrLV~p  164 (224)
T d1vbfa_         134 PYDRVVVWATAPTLLCKPYEQLKEGGIMILP  164 (224)
T ss_dssp             CEEEEEESSBBSSCCHHHHHTEEEEEEEEEE
T ss_pred             hHHHHHhhcchhhhhHHHHHhcCCCCEEEEE
Confidence            5898887666666556778999999999875

>d2f1fa2 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Escherichia coli [TaxId: 562]

Probab=83.00  E-value=1.1  Score=22.20  Aligned_cols=29  Identities=21%  Similarity=0.212  Sum_probs=24.7

Q ss_pred             cEEEEccCChHHHHHHHHhhhcCCEEEEE
Q 040104           18 DVSFDCAGFNKTMSTALSATRAGGKVCLV   46 (105)
Q Consensus        18 d~vid~~g~~~~~~~~~~~l~~~G~~v~~   46 (105)
                      .++|+++|.+.-++..+..|++.|.+..+
T Consensus        42 ~~iie~tG~~~~id~fi~~l~~~g~I~Ei   70 (86)
T d2f1fa2          42 LYTVQLAGTSGKLDAFLASIRDVAKIVEV   70 (86)
T ss_dssp             EEEEEEEECHHHHHHHHHHHTTTSEEEEE
T ss_pred             EEEEEEeCCHHHHHHHHHHhhccCCEEEE
Confidence            36889999999999999999999955444

>d1yl7a1 c.2.1.3 (A:2-105,A:215-245) Dihydrodipicolinate reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Glyceraldehyde-3-phosphate dehydrogenase-like, N-terminal domain
domain: Dihydrodipicolinate reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=82.37  E-value=1.4  Score=23.64  Aligned_cols=36  Identities=17%  Similarity=0.127  Sum_probs=28.2

Q ss_pred             CCCCcEEEEccCChHHHHHHHHhhhcCCEEEEEcCCC
Q 040104           14 GTGIDVSFDCAGFNKTMSTALSATRAGGKVCLVGMGH   50 (105)
Q Consensus        14 ~~g~d~vid~~g~~~~~~~~~~~l~~~G~~v~~g~~~   50 (105)
                      ..++|++||++--.. ....++.+...|.=+++|..+
T Consensus        42 ~~~~DvvIDFS~p~~-~~~~~~~~~~~~~~~ViGTTG   77 (135)
T d1yl7a1          42 DGNTEVVIDFTHPDV-VMGNLEFLIDNGIHAVVGTTG   77 (135)
T ss_dssp             TTTCSEEEECCCTTT-HHHHHHHHHHTTCEEEECCCC
T ss_pred             cccCCEEEEcccHHH-HHHHHHHHHhcCCCEEEeccc
Confidence            457999999886544 788888888888888888654

>d2pc6a1 d.58.18.6 (A:78-163) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]}

class: Alpha and beta proteins (a+b)
fold: Ferredoxin-like
superfamily: ACT-like
family: IlvH-like
domain: Acetolactate synthase small subunit, IlvH
species: Nitrosomonas europaea [TaxId: 915]

Probab=80.93  E-value=0.66  Score=22.98  Aligned_cols=27  Identities=11%  Similarity=0.129  Sum_probs=23.9

Q ss_pred             EEEEccCChHHHHHHHHhhhcCCEEEE
Q 040104           19 VSFDCAGFNKTMSTALSATRAGGKVCL   45 (105)
Q Consensus        19 ~vid~~g~~~~~~~~~~~l~~~G~~v~   45 (105)
                      ++|+++|.+.-++..+..+++.|.+=+
T Consensus        43 ~iie~tG~~~~id~fi~~l~~~gi~Ei   69 (86)
T d2pc6a1          43 YTIELTGTRSKLDGFLQAVDCNLILEI   69 (86)
T ss_dssp             EEEEEEECHHHHHHHHHHSCGGGEEEE
T ss_pred             EEEEEeCCHHHHHHHHHHhcccCCEEE
Confidence            688999999999999999999997543