Citrus Sinensis ID: 040113

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------
Protein Sequence
MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEESIFRRI
Secondary Structure (PSIPRED)
cccHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccEEEccccccEEEEEcccccccEEEcccccccccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccHHHHHcccccccEEEcccccccccccHHccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccccccccccccccccEEEccccccEEEEcccccccccccccEEEccccEEEEEEccccccccccccEEEccccccccccHHHcccccccEEEcccccccccccccccccccccccEEEccccccccccccccccccccccccEEEccccccccccccccccccEEEccccccEEEccccccccccccEEEcccccccccccHHHHHccccccEEEccccccEEEccccccccccccEEEccccEEEEcccHHHHHcccccEEEcccccccccccHHHHccccccEEEccccccEEEccccccccccccccEEEcccccccccccHHHHcccHHHHHccccccccccccccccccccccccEEEEEEEEEEEEcccccccccccccEEEEcccccccccccHHHHccccccccccccccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccEEEEccccccEEEEEEEcccccccEEccHHHHHcccccEEEEEEEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEccccccccccccHHHccccccEEEEcccccccccccHHHccccccEEEEEccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHccccccEEEEcccccccccccHHHHHccccccEEEEcccccccccccHHHcccccccEEEcccccccccccHHHHccccccEEEcccccccccccccHHHcccccccEEEcccccccccccHcHccccHHHHHHHHcccccccccHHHcccccccEEEcccccccccccHHHHHcccccccEEEccccccccccccccccccccccEEEEEcccccccccccccccccEEEEEccccccccccHHHccccccEEEEcccccccccccHHHHccccccEEEEccccccccccccHHcccccEEEEEcccccccccccHHHHcccccEEEEcccccccccccHHHccccccEEEEEcccccccccccccccccccccEEEEEccccccccccHHHHHHHHHHHHccccccccccccccccccccccccEEEHHHHEEccccccHHHHccccEEEEEEcccccccccccHHHHHHccccEEEccccccEEcccHHccccccccEEEccccccEEcccHHHHHcccccEEEccccEEEEEccccccHHHccHHHcccccEEEccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MGSSQCLFSIFMQLFVpliffnfttatfstaSSVLRLCHDDECSALLQFKESLIINdtieesyhyypwssgcrpkaaswkpeegnidccswdgvecsentghvmkldlsnsclygsinsssslFKLVHLEWLNLAfndfksseipseIINLSRLsylnlshssffgqiPSEILELVNLVSLdlslnsgyglelqkpnFANLVEKLSNLETLDLGYVSIRStiphnlanlssltflslhscglqgRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSInnlsgelptsIQNLVSLEEldlsfnklsgefpwsivignftqlqsldftsnkfsGELHASIGNLRSLEVLAIGrcnfsgripsslrNLTQLITLdlsqnsyrgtMELDFLLVSLKNLEVLSLSSNWLSLLTKVTsnttsqkfTVVGlrscnliefpnflkNQHHLMLLDlssnrihgkipswlldpstqnlsALNLSHnlltgfdqqlvvlpggkRFLLTLDlssnnlqgplpvppsrtvnylvsnnsfigeipswlckldslEILVLSHNnlsgllprclgsfsdkLSILDLRannffgtipntfmkESRLGMIdlshnlfqgriprslincsklefldigdnqirdifpswlgtlpnltvlilqsnkfygiirepridcgfsKLRIIDlsnnrftgklpsksflCWNAMKIVNTSDLKYLqdvispkewllsdevaTYDYSlkmnnkgqimtydkvPDILTSIILssnrfdgmiptsianlkglqvlnldnnnlqghipsclgnltnlesldlsnnnflgqipQQLVELTFLEFfnvsdnyltgpipqgrqfatfdnssfesnsglcgrplsrecesdeaptnedhskgaeESIFRRI
Flexible Loop (DISEMBL)
MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLsnnrftgklpsksFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREcesdeaptnedhskgaeesifrri
Low Complexity Region (SEG)
MGSSQCLFSIFMQLFVPLIffnfttatfstassVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEIlelvnlvsldlslnsGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQsslgnlskllhldlslnellgelPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNlevlslssnwlsllTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQnlsalnlshnllTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGlqvlnldnnnlqGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEESIFRRI
Disordered region (IsUnstruct)
*****CLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLY*********FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFAT********************************************
Disordered Region (DISOPRED)
*****CL*SIFMQLFVPLIFFNFTTATFSTASS****CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMK***********DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGR***********************SIFRRI
Disordered Region (DISEMBL)
MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLS**************************
Disordered Region (DISPRO)
***SQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWS****PKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSR*************************
Transmembrane Helix (TMHMM)
iiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEESIFRRI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	887	2.2.26 [Sep-21-2011]
Q9C9H7	847	Receptor-like protein 12	no	no	0.866	0.907	0.369	1e-119
Q9FL28	1173	LRR receptor-like serine/	no	no	0.789	0.596	0.321	2e-74
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.751	0.605	0.322	9e-70
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.852	0.605	0.297	1e-65
Q9LP24	1120	Probable leucine-rich rep	no	no	0.756	0.599	0.290	3e-65
C0LGS2	1136	Probable LRR receptor-lik	no	no	0.702	0.548	0.316	2e-63
Q9FIZ3	1252	LRR receptor-like serine/	no	no	0.862	0.611	0.301	9e-63
Q9FZ59	1088	Leucine-rich repeat recep	no	no	0.703	0.573	0.327	3e-62
O49318	1124	Probable leucine-rich rep	no	no	0.710	0.560	0.299	2e-61
Q9LYN8	1192	Leucine-rich repeat recep	no	no	0.807	0.600	0.312	2e-60

>sp|Q9C9H7|RLP12_ARATH Receptor-like protein 12 OS=Arabidopsis thaliana GN=RLP12 PE=2 SV=2

 Score =  430 bits (1106), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 320/866 (36%), Positives = 453/866 (52%), Gaps = 97/866 (11%)

Query: 29  STASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWK-PEEGNID 87
           S ASS    C DD+  ALL+F+    IN     S+H              W+ P   + D
Sbjct: 25  SLASSSPHFCRDDQRDALLEFRGEFPIN----ASWHI----------MNQWRGPWNKSTD 70

Query: 88  CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE 147
           CC W+GV C++ +G V+ LD+ N+ L   + ++SSLFKL +L  L+L  N     EIPS 
Sbjct: 71  CCLWNGVTCNDKSGQVISLDIPNTFLNNYLKTNSSLFKLQYLRHLDLT-NCNLYGEIPSS 129

Query: 148 IINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN 207
           + NLS L+ +NL  + F G+IP+ I  L  L  L L+ N   G   + P+    + +L N
Sbjct: 130 LGNLSHLTLVNLYFNKFVGEIPASIGNLNQLRHLILANNVLTG---EIPSSLGNLSRLVN 186

Query: 208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL 267
           LE      V     IP ++ +L  L  LSL S  L G I SSLGNLS L+HL L+ N+L+
Sbjct: 187 LELFSNRLV---GKIPDSIGDLKQLRNLSLASNNLIGEIPSSLGNLSNLVHLVLTHNQLV 243

Query: 268 GELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF 327
           GE+P SIGNL  L+ +    N+LSG +P S  NL  L    LS N  +  FP+ + I  F
Sbjct: 244 GEVPASIGNLIELRVMSFENNSLSGNIPISFANLTKLSIFVLSSNNFTSTFPFDMSI--F 301

Query: 328 TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP-SSLRNLTQLITLDLSQN 386
             L+  D + N FSG    S+  + SLE + +    F+G I  ++  + T+L  L L +N
Sbjct: 302 HNLEYFDVSYNSFSGPFPKSLLLIPSLESIYLQENQFTGPIEFANTSSSTKLQDLILGRN 361

Query: 387 SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFL 446
              G +     +  L NLE L +S N                FT            P  +
Sbjct: 362 RLHGPIPES--ISRLLNLEELDISHN---------------NFTGA---------IPPTI 395

Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL 506
               +L+ LDLS N + G++P+ L       L+ + LSHN  + F+         +  + 
Sbjct: 396 SKLVNLLHLDLSKNNLEGEVPACLW-----RLNTMVLSHNSFSSFENT----SQEEALIE 446

Query: 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR 566
            LDL+SN+ QGP+P        Y++             CKL SL  L LS+N  SG +P 
Sbjct: 447 ELDLNSNSFQGPIP--------YMI-------------CKLSSLGFLDLSNNLFSGSIPS 485

Query: 567 CLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626
           C+ +FS  +  L+L  NNF GT+P+ F K + L  +D+SHN  +G+ P+SLINC  LE +
Sbjct: 486 CIRNFSGSIKELNLGDNNFSGTLPDIFSKATELVSLDVSHNQLEGKFPKSLINCKALELV 545

Query: 627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK 686
           ++  N+I+DIFPSWL +LP+L VL L+SNKFYG +       GF  LRIID+S+N F+G 
Sbjct: 546 NVESNKIKDIFPSWLESLPSLHVLNLRSNKFYGPLYHRHASIGFQSLRIIDISHNNFSGT 605

Query: 687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVP 746
           LP   F  W  M  +     +Y+ +      W  +D   +Y + ++M NKG  M+++++ 
Sbjct: 606 LPPYYFSNWKDMTTLTEEMDQYMTEF-----WRYAD---SYYHEMEMVNKGVDMSFERIR 657

Query: 747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN 806
               +I  S N+ +G IP S+  LK L+VLNL  N     IP  L NLT LE+LD+S N 
Sbjct: 658 RDFRAIDFSGNKINGNIPESLGYLKELRVLNLSGNAFTSVIPRFLANLTKLETLDISRNK 717

Query: 807 FLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECES 866
             GQIPQ L  L+FL + N S N L GP+P+G QF     SSF  N GL G  L   C  
Sbjct: 718 LSGQIPQDLAALSFLSYMNFSHNLLQGPVPRGTQFQRQKCSSFLDNPGLYG--LEDICRD 775

Query: 867 DEA--PTN---EDHSKGAEESIFRRI 887
             A  PT+   ED S+ AEE++F  +
Sbjct: 776 TGALNPTSQLPEDLSE-AEENMFNWV 800

Involved in the perception of CLV3 and CLV3-like peptides, that act as extracellular signals regulating meristems maintenance.
Arabidopsis thaliana (taxid: 3702)

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  281 bits (719), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 261/811 (32%), Positives = 383/811 (47%), Gaps = 111/811 (13%)

Query: 84  GNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSE 143
           G++  C+W G+ C ++TGHV+ + L    L G +  S ++  L +L+ L+L  N F + +
Sbjct: 56  GSLRHCNWTGITC-DSTGHVVSVSLLEKQLEGVL--SPAIANLTYLQVLDLTSNSF-TGK 111

Query: 144 IPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203
           IP+EI  L+ L+ L L  + F G IPS I EL N+  LDL                    
Sbjct: 112 IPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLR------------------- 152

Query: 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSL 263
             +NL + D         +P  +   SSL  +      L G+I   LG+L  L     + 
Sbjct: 153 --NNLLSGD---------VPEEICKTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAG 201

Query: 264 NELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323
           N L G +PVSIG L +L  LDLS N L+G++P    NL++L+ L L+ N L G+ P    
Sbjct: 202 NHLTGSIPVSIGTLANLTDLDLSGNQLTGKIPRDFGNLLNLQSLVLTENLLEGDIPAE-- 259

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
           IGN + L  L+   N+ +G++ A +GNL  L+ L I +   +  IPSSL  LTQL  L L
Sbjct: 260 IGNCSSLVQLELYDNQLTGKIPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGL 319

Query: 384 SQNSYRGTM--ELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
           S+N   G +  E+ F    L++LEVL+L SN                FT          E
Sbjct: 320 SENHLVGPISEEIGF----LESLEVLTLHSN---------------NFTG---------E 351

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWL-LDPSTQNLSALNLSHNLLTGFDQQLVVLPG 500
           FP  + N  +L +L +  N I G++P+ L L  + +NLSA     NLLTG     +    
Sbjct: 352 FPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSA---HDNLLTGPIPSSISNCT 408

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS--NNSFIGEIPS---------------- 542
           G +    LDLS N + G +P    R     +S   N F GEIP                 
Sbjct: 409 GLKL---LDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLETLSVADN 465

Query: 543 --------WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFM 594
                    + KL  L IL +S+N+L+G +PR +G+  D L+IL L +N F G IP    
Sbjct: 466 NLTGTLKPLIGKLQKLRILQVSYNSLTGPIPREIGNLKD-LNILYLHSNGFTGRIPREMS 524

Query: 595 KESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS 654
             + L  + +  N  +G IP  + +   L  LD+ +N+     P+    L +LT L LQ 
Sbjct: 525 NLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQG 584

Query: 655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVIS 714
           NKF G I  P      S L   D+S+N  TG +P +       M++        L   I 
Sbjct: 585 NKFNGSI--PASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTGTI- 641

Query: 715 PKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774
           PKE    + V   D S  + +     +     ++ T +  S N   G IP  +   +G+ 
Sbjct: 642 PKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFT-LDFSQNNLSGHIPDEV--FQGMD 698

Query: 775 V---LNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYL 831
           +   LNL  N+  G IP   GN+T+L SLDLS+NN  G+IP+ L  L+ L+   ++ N L
Sbjct: 699 MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNL 758

Query: 832 TGPIPQGRQFATFDNSSFESNSGLCG--RPL 860
            G +P+   F   + S    N+ LCG  +PL
Sbjct: 759 KGHVPESGVFKNINASDLMGNTDLCGSKKPL 789

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  265 bits (678), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 259/804 (32%), Positives = 370/804 (46%), Gaps = 137/804 (17%)

Query: 89  CSWDGVECSENTG--HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS 146
           C W GV CS  +    V+ L+LS+  L G +  S S+  LVHL+ L+L++N   S +IP 
Sbjct: 59  CGWTGVMCSNYSSDPEVLSLNLSSMVLSGKL--SPSIGGLVHLKQLDLSYNGL-SGKIPK 115

Query: 147 EIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLS 206
           EI N S L  L L+++ F G+IP EI +LV+L +L +  N                    
Sbjct: 116 EIGNCSSLEILKLNNNQFDGEIPVEIGKLVSLENLIIYNN-------------------- 155

Query: 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNEL 266
                      I  ++P  + NL SL+ L  +S  + G++  S+GNL +L       N +
Sbjct: 156 ----------RISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMI 205

Query: 267 LGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN 326
            G LP  IG   SL  L L+ N LSGELP  I  L  L ++ L  N+ SG  P    I N
Sbjct: 206 SGSLPSEIGGCESLVMLGLAQNQLSGELPKEIGMLKKLSQVILWENEFSGFIPRE--ISN 263

Query: 327 FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
            T L++L    N+  G +   +G+L+SLE L + R   +G IP  + NL+  I +D S+N
Sbjct: 264 CTSLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSEN 323

Query: 387 SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFL 446
           +  G + L+     L N+E L L                                     
Sbjct: 324 ALTGEIPLE-----LGNIEGLEL------------------------------------- 341

Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRF-- 504
                   L L  N++ G IP  L   + +NLS L+LS N LTG       +P G ++  
Sbjct: 342 --------LYLFENQLTGTIPVEL--STLKNLSKLDLSINALTG------PIPLGFQYLR 385

Query: 505 -LLTLDLSSNNLQGPLPVPPSRTVNYLV---SNNSFIGEIPSWLCKLDSLEILVLSHNNL 560
            L  L L  N+L G +P       +  V   S+N   G IPS+LC   ++ IL L  NNL
Sbjct: 386 GLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNL 445

Query: 561 SGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
           SG +P  + +    L  L L  NN  G  P+   K+  +  I+L  N F+G IPR + NC
Sbjct: 446 SGNIPTGI-TTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNC 504

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
           S L+ L + DN      P  +G L  L  L + SNK  G +     +C    L+ +D+  
Sbjct: 505 SALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKM--LQRLDMCC 562

Query: 681 NRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIM 740
           N F+G LPS         ++ +   L+ L+         LS+   +    + + N  +  
Sbjct: 563 NNFSGTLPS---------EVGSLYQLELLK---------LSNNNLSGTIPVALGNLSR-- 602

Query: 741 TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQV-LNLDNNNLQGHIPSCLGNLTNLES 799
                   LT + +  N F+G IP  + +L GLQ+ LNL  N L G IP  L NL  LE 
Sbjct: 603 --------LTELQMGGNLFNGSIPRELGSLTGLQIALNLSYNKLTGEIPPELSNLVMLEF 654

Query: 800 LDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRP 859
           L L+NNN  G+IP     L+ L  +N S N LTGPIP  R  +    SSF  N GLCG P
Sbjct: 655 LLLNNNNLSGEIPSSFANLSSLLGYNFSYNSLTGPIPLLRNISM---SSFIGNEGLCGPP 711

Query: 860 LSRECESDE-APTNEDHSKGAEES 882
           L++  ++   AP+      G   S
Sbjct: 712 LNQCIQTQPFAPSQSTGKPGGMRS 735

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  252 bits (643), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 268/901 (29%), Positives = 414/901 (45%), Gaps = 145/901 (16%)

Query: 40  DDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSEN 99
           +++   LL+ K+SL+ N   +E      W+S              NI+ CSW GV C +N
Sbjct: 24  NNDLQTLLEVKKSLVTNP--QEDDPLRQWNSD-------------NINYCSWTGVTC-DN 67

Query: 100 TG--HVMKLDLSNSCLYGSINSSSSLFK-LVHLEWLNLAFNDFKSSEIPSEIINLSRLSY 156
           TG   V+ L+L+   L GSI+     F  L+HL+   L+ N+     IP+ + NL+ L  
Sbjct: 68  TGLFRVIALNLTGLGLTGSISPWFGRFDNLIHLD---LSSNNL-VGPIPTALSNLTSLES 123

Query: 157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG---------LELQKPNFANL------ 201
           L L  +   G+IPS++  LVN+ SL +  N   G         + LQ    A+       
Sbjct: 124 LFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPI 183

Query: 202 ---VEKLSNLETL-------------DLGYVS-----------IRSTIPHNLANLSSLTF 234
              + +L  +++L             +LG  S           +  TIP  L  L +L  
Sbjct: 184 PSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENMLNGTIPAELGRLENLEI 243

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
           L+L +  L G I S LG +S+L +L L  N+L G +P S+ +L +L+ LDLS NNL+GE+
Sbjct: 244 LNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEI 303

Query: 295 PTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL 354
           P    N+  L +L L+ N LSG  P SI   N T L+ L  +  + SGE+   +   +SL
Sbjct: 304 PEEFWNMSQLLDLVLANNHLSGSLPKSICSNN-TNLEQLVLSGTQLSGEIPVELSKCQSL 362

Query: 355 EVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL 414
           + L +   + +G IP +L  L +L  L L  N+  GT+     + +L NL+ L L  N  
Sbjct: 363 KQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPS--ISNLTNLQWLVLYHN-- 418

Query: 415 SLLTKVTSNTTS-QKFTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD 472
           +L  K+    ++ +K  V+ L       E P  + N   L ++D+  N   G+IP     
Sbjct: 419 NLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIP----- 473

Query: 473 PSTQNLSALNLSH----NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP---PSR 525
           PS   L  LNL H     L+ G    L    G    L  LDL+ N L G +P        
Sbjct: 474 PSIGRLKELNLLHLRQNELVGGLPASL----GNCHQLNILDLADNQLSGSIPSSFGFLKG 529

Query: 526 TVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL-PRCLGS-----------FSD 573
               ++ NNS  G +P  L  L +L  + LSHN L+G + P C  S           F D
Sbjct: 530 LEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFED 589

Query: 574 KLSI----------LDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
           ++ +          L L  N   G IP T  K   L ++D+S N   G IP  L+ C KL
Sbjct: 590 EIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKL 649

Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
             +D+ +N +    P WLG L  L  L L SN+F   +     +C  +KL ++ L  N  
Sbjct: 650 THIDLNNNFLSGPIPPWLGKLSQLGELKLSSNQFVESLPTELFNC--TKLLVLSLDGNSL 707

Query: 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNN-KGQI-MT 741
            G +P +      A+ ++N    ++   +  P+   +      Y+  L  N+  G+I + 
Sbjct: 708 NGSIP-QEIGNLGALNVLNLDKNQFSGSL--PQA--MGKLSKLYELRLSRNSLTGEIPVE 762

Query: 742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLD 801
             ++ D+ +++ LS N F G IP++I  L  L+ L+L +N L G +P  +G++ +L  L+
Sbjct: 763 IGQLQDLQSALDLSYNNFTGDIPSTIGTLSKLETLDLSHNQLTGEVPGSVGDMKSLGYLN 822

Query: 802 LSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLS 861
           +S NN  G++                           +QF+ +   SF  N+GLCG PLS
Sbjct: 823 VSFNNLGGKLK--------------------------KQFSRWPADSFLGNTGLCGSPLS 856

Query: 862 R 862
           R
Sbjct: 857 R 857

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  251 bits (640), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 250/861 (29%), Positives = 377/861 (43%), Gaps = 190/861 (22%)

Query: 58  TIEESYHYYPWSSGCR--PKAASWKPEEG---NIDCCSWDGVECSENTGHVMKLDLSNSC 112
           TI E+     W S      K +SW  +     +  C SW GV C+   G + +L+L+N+ 
Sbjct: 30  TIAEANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSR-GSIEELNLTNTG 88

Query: 113 LYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEI 172
           + G+                   F DF         I+LS L+Y++LS +   G IP + 
Sbjct: 89  IEGT-------------------FQDFP-------FISLSNLAYVDLSMNLLSGTIPPQF 122

Query: 173 LELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSL 232
             L  L+  DLS N   G E+  P+  N    L NL  L L    + S IP  L N+ S+
Sbjct: 123 GNLSKLIYFDLSTNHLTG-EIS-PSLGN----LKNLTVLYLHQNYLTSVIPSELGNMESM 176

Query: 233 TFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG 292
           T L+L    L G I SSLGNL  L+ L L  N L G +P  +GN+ S+  L LS N L+G
Sbjct: 177 TDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPELGNMESMTDLALSQNKLTG 236

Query: 293 ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLR 352
            +P+++ NL +L  L L  N L+G  P    IGN   + +L  + NK +G + +S+GNL+
Sbjct: 237 SIPSTLGNLKNLMVLYLYENYLTGVIPPE--IGNMESMTNLALSQNKLTGSIPSSLGNLK 294

Query: 353 SLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           +L +L++ +   +G IP  L N+  +I L+LS N   G++     L +LKNL +L L  N
Sbjct: 295 NLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSS--LGNLKNLTILYLYEN 352

Query: 413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD 472
           +L+ +                         P  L N   ++ L L++N++ G IPS    
Sbjct: 353 YLTGV------------------------IPPELGNMESMIDLQLNNNKLTGSIPS---- 384

Query: 473 PSTQNLSALNLSHNLLTGFDQQLVVLP---GGKRFLLTLDLSSNNLQGPLP--------- 520
               +   L     L    +    V+P   G    ++ LDLS N L G +P         
Sbjct: 385 ----SFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKL 440

Query: 521 -------------VPP-----SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
                        +PP     S     ++  N+F G  P  +CK   L+ + L +N+L G
Sbjct: 441 ESLYLRVNHLSGAIPPGVANSSHLTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEG 500

Query: 563 LLPRCL------------------------GSFSDKLSILDLRANNFFGTIPNTFMKESR 598
            +P+ L                        G + D L+ +D   N F G I + + K  +
Sbjct: 501 PIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPD-LNFIDFSHNKFHGEISSNWEKSPK 559

Query: 599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFY 658
           LG + +S+N   G IP  + N ++L  LD+  N +    P  +G L NL+ L L  N+  
Sbjct: 560 LGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLS 619

Query: 659 GIIREPRIDCGFS---KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISP 715
           G     R+  G S    L  +DLS+N F+ ++P                           
Sbjct: 620 G-----RVPAGLSFLTNLESLDLSSNNFSSEIPQ-------------------------- 648

Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQV 775
                     T+D  LK+++                + LS N+FDG IP  ++ L  L  
Sbjct: 649 ----------TFDSFLKLHD----------------MNLSRNKFDGSIP-RLSKLTQLTQ 681

Query: 776 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
           L+L +N L G IPS L +L +L+ LDLS+NN  G IP     +  L   ++S+N L GP+
Sbjct: 682 LDLSHNQLDGEIPSQLSSLQSLDKLDLSHNNLSGLIPTTFEGMIALTNVDISNNKLEGPL 741

Query: 836 PQGRQFATFDNSSFESNSGLC 856
           P    F      + E N GLC
Sbjct: 742 PDTPTFRKATADALEENIGLC 762

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGS2|Y4361_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g36180 OS=Arabidopsis thaliana GN=At4g36180 PE=1 SV=1

 Score =  244 bits (624), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 229/723 (31%), Positives = 342/723 (47%), Gaps = 100/723 (13%)

Query: 211 LDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL 270
           + L  + +   I   ++ L  L  LSL S    G I +SL   ++LL + L  N L G+L
Sbjct: 73  IRLPRLQLSGRISDRISGLRMLRKLSLRSNSFNGTIPTSLAYCTRLLSVFLQYNSLSGKL 132

Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
           P ++ NL SL+  +++ N LSGE+P  + +  SL+ LD+S N  SG+ P  +      QL
Sbjct: 133 PPAMRNLTSLEVFNVAGNRLSGEIPVGLPS--SLQFLDISSNTFSGQIPSGLANLTQLQL 190

Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
            +L +  N+ +GE+ AS+GNL+SL+ L +      G +PS++ N + L+ L  S+N   G
Sbjct: 191 LNLSY--NQLTGEIPASLGNLQSLQYLWLDFNLLQGTLPSAISNCSSLVHLSASENEIGG 248

Query: 391 TMELDFLLVSLKNLEVLSLSSNWLSLLTKVT-SNTTSQKFTVVGLRSCNLIEFPNFLKN- 448
            +   +   +L  LEVLSLS+N  S     +    TS     +G  + + I  P    N 
Sbjct: 249 VIPAAY--GALPKLEVLSLSNNNFSGTVPFSLFCNTSLTIVQLGFNAFSDIVRPETTANC 306

Query: 449 QHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTL 508
           +  L +LDL  NRI G+ P WL +    +L  L++S NL +G   ++    G  + L  L
Sbjct: 307 RTGLQVLDLQENRISGRFPLWLTN--ILSLKNLDVSGNLFSG---EIPPDIGNLKRLEEL 361

Query: 509 DLSSNNLQGPLPVPPSRTVNYLV---SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
            L++N+L G +PV   +  +  V     NS  G+IP +L  + +L++L L  N+ SG +P
Sbjct: 362 KLANNSLTGEIPVEIKQCGSLDVLDFEGNSLKGQIPEFLGYMKALKVLSLGRNSFSGYVP 421

Query: 566 RCL-----------------GSFS------DKLSILDLRANNFFGTIPNTFMKESRLGMI 602
             +                 GSF         LS LDL  N F G +P +    S L  +
Sbjct: 422 SSMVNLQQLERLNLGENNLNGSFPVELMALTSLSELDLSGNRFSGAVPVSISNLSNLSFL 481

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
           +LS N F G IP S+ N  KL  LD+    +    P  L  LPN+ V+ LQ N F G++ 
Sbjct: 482 NLSGNGFSGEIPASVGNLFKLTALDLSKQNMSGEVPVELSGLPNVQVIALQGNNFSGVVP 541

Query: 663 EPRIDCGFSKL---RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL 719
           E     GFS L   R ++LS+N F+G++P ++F     +  ++ SD  ++   I P    
Sbjct: 542 E-----GFSSLVSLRYVNLSSNSFSGEIP-QTFGFLRLLVSLSLSD-NHISGSIPP---- 590

Query: 720 LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
              E+                        L  + L SNR  G IP  ++ L  L+VL+L 
Sbjct: 591 ---EIGNCS-------------------ALEVLELRSNRLMGHIPADLSRLPRLKVLDLG 628

Query: 780 NNNLQGH------------------------IPSCLGNLTNLESLDLSNNNFLGQIPQQL 815
            NNL G                         IP     L+NL  +DLS NN  G+IP  L
Sbjct: 629 QNNLSGEIPPEISQSSSLNSLSLDHNHLSGVIPGSFSGLSNLTKMDLSVNNLTGEIPASL 688

Query: 816 VELTF-LEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNED 874
             ++  L +FNVS N L G IP        + S F  N+ LCG+PL+R CES  A   + 
Sbjct: 689 ALISSNLVYFNVSSNNLKGEIPASLGSRINNTSEFSGNTELCGKPLNRRCESSTAEGKKK 748

Query: 875 HSK 877
             K
Sbjct: 749 KRK 751

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2

 Score =  242 bits (618), Expect = 9e-63,   Method: Compositional matrix adjust.
 Identities = 276/914 (30%), Positives = 397/914 (43%), Gaps = 149/914 (16%)

Query: 28  FSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNID 87
           FS+     +    D+   LL+ K S I N   E+      W+SG    + S+        
Sbjct: 15  FSSGLGSGQPGQRDDLQTLLELKNSFITNPKEEDVLR--DWNSG----SPSY-------- 60

Query: 88  CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFK-LVHLEWLNLAFNDFKSSEIPS 146
            C+W GV C      ++ L+LS   L GSI+ S   F  L+H++   L+ N      IP+
Sbjct: 61  -CNWTGVTCGGR--EIIGLNLSGLGLTGSISPSIGRFNNLIHID---LSSNRL-VGPIPT 113

Query: 147 EIINLSRLSYLNLSHSSFF-GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKL 205
            + NLS         S+   G IPS++  LVNL SL L  N                   
Sbjct: 114 TLSNLSSSLESLHLFSNLLSGDIPSQLGSLVNLKSLKLGDNE------------------ 155

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
                       +  TIP    NL +L  L+L SC L G I S  G L +L  L L  NE
Sbjct: 156 ------------LNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQLQTLILQDNE 203

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI--- 322
           L G +P  IGN  SL     + N L+G LP  +  L +L+ L+L  N  SGE P  +   
Sbjct: 204 LEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFSGEIPSQLGDL 263

Query: 323 -------VIGNFTQ------------LQSLDFTSNKFSGELHASIGNLRSLEVLAIGR-- 361
                  +IGN  Q            LQ+LD +SN  +G +H     +  LE L + +  
Sbjct: 264 VSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMNQLEFLVLAKNR 323

Query: 362 -----------------------CNFSGRIPSSLRNLTQLITLDLSQNSYRGTM-ELDFL 397
                                     SG IP+ + N   L  LDLS N+  G + +  F 
Sbjct: 324 LSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIPDSLFQ 383

Query: 398 LVSLKNLEVLSLSSNWL--SLLTKVTSNTTSQKFTV------------VGLRSCNLI--- 440
           LV L N   L L++N L  +L + +++ T  Q+FT+            +G      I   
Sbjct: 384 LVELTN---LYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIMYL 440

Query: 441 -------EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
                  E P  + N   L  +D   NR+ G+IPS +     ++L+ L+L  N L G   
Sbjct: 441 YENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSI--GRLKDLTRLHLRENELVG--- 495

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN---YLVSNNSFIGEIPSWLCKLDSL 550
            +    G    +  +DL+ N L G +P           +++ NNS  G +P  L  L +L
Sbjct: 496 NIPASLGNCHQMTVIDLADNQLSGSIPSSFGFLTALELFMIYNNSLQGNLPDSLINLKNL 555

Query: 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
             +  S N  +G +    GS S  LS  D+  N F G IP    K + L  + L  N F 
Sbjct: 556 TRINFSSNKFNGSISPLCGS-SSYLS-FDVTENGFEGDIPLELGKSTNLDRLRLGKNQFT 613

Query: 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF 670
           GRIPR+    S+L  LDI  N +  I P  LG    LT + L +N   G+I  P      
Sbjct: 614 GRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVI--PTWLGKL 671

Query: 671 SKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYS 730
             L  + LS+N+F G LP++ F   N + +    D   L   I P+E  + +  A    +
Sbjct: 672 PLLGELKLSSNKFVGSLPTEIFSLTNILTLF--LDGNSLNGSI-PQE--IGNLQALNALN 726

Query: 731 LKMNN-KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ-VLNLDNNNLQGHIP 788
           L+ N   G + +       L  + LS N   G IP  I  L+ LQ  L+L  NN  G IP
Sbjct: 727 LEENQLSGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIP 786

Query: 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSS 848
           S +  L  LESLDLS+N  +G++P Q+ ++  L + N+S N L G +   +QF+ +   +
Sbjct: 787 STISTLPKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLK--KQFSRWQADA 844

Query: 849 FESNSGLCGRPLSR 862
           F  N+GLCG PLS 
Sbjct: 845 FVGNAGLCGSPLSH 858

Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FZ59|PEPR2_ARATH Leucine-rich repeat receptor-like protein kinase PEPR2 OS=Arabidopsis thaliana GN=PEPR2 PE=1 SV=1

 Score =  240 bits (613), Expect = 3e-62,   Method: Compositional matrix adjust.
 Identities = 231/705 (32%), Positives = 331/705 (46%), Gaps = 81/705 (11%)

Query: 157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV 216
           LNLS S   GQ+ SEI EL +LV+LDLSLNS  GL        + +   ++LE LDL   
Sbjct: 81  LNLSASGLSGQLGSEIGELKSLVTLDLSLNSFSGL------LPSTLGNCTSLEYLDLSNN 134

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
                +P    +L +LTFL L    L G I +S+G L +L+ L +S N L G +P  +GN
Sbjct: 135 DFSGEVPDIFGSLQNLTFLYLDRNNLSGLIPASVGGLIELVDLRMSYNNLSGTIPELLGN 194

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
              L+ L L+ N L+G LP S+  L +L EL +S N L G   +     N  +L SLD +
Sbjct: 195 CSKLEYLALNNNKLNGSLPASLYLLENLGELFVSNNSLGGRLHFGS--SNCKKLVSLDLS 252

Query: 337 SNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF 396
            N F G +   IGN  SL  L + +CN +G IPSS+  L ++  +DLS N   G +  + 
Sbjct: 253 FNDFQGGVPPEIGNCSSLHSLVMVKCNLTGTIPSSMGMLRKVSVIDLSDNRLSGNIPQE- 311

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
            L +  +LE L L+ N L                          E P  L     L  L+
Sbjct: 312 -LGNCSSLETLKLNDNQLQ------------------------GEIPPALSKLKKLQSLE 346

Query: 457 LSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           L  N++ G+IP  +     Q+L+ + + +N LTG   +L V     + L  L L +N   
Sbjct: 347 LFFNKLSGEIPIGIW--KIQSLTQMLVYNNTLTG---ELPVEVTQLKHLKKLTLFNNGFY 401

Query: 517 GPLPVPPS--RTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD 573
           G +P+     R++  + +  N F GEIP  LC    L + +L  N L G +P  +     
Sbjct: 402 GDIPMSLGLNRSLEEVDLLGNRFTGEIPPHLCHGQKLRLFILGSNQLHGKIPASIRQ-CK 460

Query: 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI 633
            L  + L  N   G +P  F +   L  ++L  N F+G IPRSL +C  L  +D+  N++
Sbjct: 461 TLERVRLEDNKLSGVLPE-FPESLSLSYVNLGSNSFEGSIPRSLGSCKNLLTIDLSQNKL 519

Query: 634 RDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693
             + P  LG L +L +L L  N   G +  P    G ++L   D+ +N   G +PS SF 
Sbjct: 520 TGLIPPELGNLQSLGLLNLSHNYLEGPL--PSQLSGCARLLYFDVGSNSLNGSIPS-SFR 576

Query: 694 CWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII 753
            W ++  +  SD  +L                           G I  +    D L+ + 
Sbjct: 577 SWKSLSTLVLSDNNFL---------------------------GAIPQFLAELDRLSDLR 609

Query: 754 LSSNRFDGMIPTSIANLKGLQV-LNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP 812
           ++ N F G IP+S+  LK L+  L+L  N   G IP+ LG L NLE L++SNN   G + 
Sbjct: 610 IARNAFGGKIPSSVGLLKSLRYGLDLSANVFTGEIPTTLGALINLERLNISNNKLTGPL- 668

Query: 813 QQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSS-FESNSGLC 856
             L  L  L   +VS N  TGPIP         NSS F  N  LC
Sbjct: 669 SVLQSLKSLNQVDVSYNQFTGPIP----VNLLSNSSKFSGNPDLC 709

Acts as a receptor for PEP defense peptides. Unlike typical immune receptors, senses an endogenous elicitor that potentiates PAMP-inducible plant responses.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O49318|Y2317_ARATH Probable leucine-rich repeat receptor-like protein kinase At2g33170 OS=Arabidopsis thaliana GN=At2g33170 PE=2 SV=1

 Score =  238 bits (607), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 246/821 (29%), Positives = 346/821 (42%), Gaps = 191/821 (23%)

Query: 89  CSWDGVECSENTGH-------VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS 141
           C+W GV CS            V  LDLS+  L G +  S S+  LV+L +LNLA+N   +
Sbjct: 66  CNWIGVNCSSQGSSSSSNSLVVTSLDLSSMNLSGIV--SPSIGGLVNLVYLNLAYNAL-T 122

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
            +IP EI N S+L  + L+++ F G IP EI                             
Sbjct: 123 GDIPREIGNCSKLEVMFLNNNQFGGSIPVEI----------------------------- 153

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
             KLS L + ++    +   +P  + +L +L  L  ++  L G +  SLGNL+KL     
Sbjct: 154 -NKLSQLRSFNICNNKLSGPLPEEIGDLYNLEELVAYTNNLTGPLPRSLGNLNKLTTFRA 212

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321
             N+  G +P  IG   +LK L L+ N +SGELP  I  LV L+E+ L  NK SG  P  
Sbjct: 213 GQNDFSGNIPTEIGKCLNLKLLGLAQNFISGELPKEIGMLVKLQEVILWQNKFSGFIPKD 272

Query: 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
             IGN T L++L    N   G + + IGN++SL+ L + +   +G IP  L  L++++ +
Sbjct: 273 --IGNLTSLETLALYGNSLVGPIPSEIGNMKSLKKLYLYQNQLNGTIPKELGKLSKVMEI 330

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
           D S+N   G + ++  L  +  L +L L  N L+ +                        
Sbjct: 331 DFSENLLSGEIPVE--LSKISELRLLYLFQNKLTGI------------------------ 364

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSA---LNLSHNLLTGFDQQLVVL 498
            PN L    +L  LDLS N + G IP     P  QNL++   L L HN L+G      V+
Sbjct: 365 IPNELSKLRNLAKLDLSINSLTGPIP-----PGFQNLTSMRQLQLFHNSLSG------VI 413

Query: 499 PGGKRF---LLTLDLSSNNLQGPLP----------------------VPPS--RTVNYL- 530
           P G      L  +D S N L G +P                      +PP   R  + L 
Sbjct: 414 PQGLGLYSPLWVVDFSENQLSGKIPPFICQQSNLILLNLGSNRIFGNIPPGVLRCKSLLQ 473

Query: 531 --VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT 588
             V  N   G+ P+ LCKL +L  + L  N  SG LP  +G+   KL  L L AN F   
Sbjct: 474 LRVVGNRLTGQFPTELCKLVNLSAIELDQNRFSGPLPPEIGT-CQKLQRLHLAANQFSSN 532

Query: 589 IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648
           +PN   K S L   ++S N   G IP  + NC  L+ LD+  N      P  LG+L  L 
Sbjct: 533 LPNEISKLSNLVTFNVSSNSLTGPIPSEIANCKMLQRLDLSRNSFIGSLPPELGSLHQLE 592

Query: 649 VLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708
           +L L  N+F G I  P      + L  + +  N F+G +P                    
Sbjct: 593 ILRLSENRFSGNI--PFTIGNLTHLTELQMGGNLFSGSIP-------------------- 630

Query: 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIA 768
                 P+  LLS         + MN                   LS N F G IP  I 
Sbjct: 631 ------PQLGLLS------SLQIAMN-------------------LSYNDFSGEIPPEIG 659

Query: 769 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD 828
           NL  L  L+L+NN+L G IP+   NL++L   + S NN  GQ+P   +            
Sbjct: 660 NLHLLMYLSLNNNHLSGEIPTTFENLSSLLGCNFSYNNLTGQLPHTQI------------ 707

Query: 829 NYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEA 869
                       F     +SF  N GLCG  L R C+   +
Sbjct: 708 ------------FQNMTLTSFLGNKGLCGGHL-RSCDPSHS 735

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LYN8|EXS_ARATH Leucine-rich repeat receptor protein kinase EXS OS=Arabidopsis thaliana GN=EXS PE=1 SV=1

 Score =  234 bits (598), Expect = 2e-60,   Method: Compositional matrix adjust.
 Identities = 258/825 (31%), Positives = 373/825 (45%), Gaps = 109/825 (13%)

Query: 89  CSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEI 148
           C W GV C    G V  L L +  L G I    S  K  +L  L LA N F S +IP EI
Sbjct: 55  CDWVGVTCL--LGRVNSLSLPSLSLRGQIPKEISSLK--NLRELCLAGNQF-SGKIPPEI 109

Query: 149 INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG-----LELQKPNFANL-- 201
            NL  L  L+LS +S  G +P  + EL  L+ LDLS N   G       +  P  ++L  
Sbjct: 110 WNLKHLQTLDLSGNSLTGLLPRLLSELPQLLYLDLSDNHFSGSLPPSFFISLPALSSLDV 169

Query: 202 ------------VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSS 249
                       + KLSNL  L +G  S    IP  + N+S L   +  SC   G +   
Sbjct: 170 SNNSLSGEIPPEIGKLSNLSNLYMGLNSFSGQIPSEIGNISLLKNFAAPSCFFNGPLPKE 229

Query: 250 LGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL 309
           +  L  L  LDLS N L   +P S G LH+L  L+L    L G +P  + N  SL+ L L
Sbjct: 230 ISKLKHLAKLDLSYNPLKCSIPKSFGELHNLSILNLVSAELIGLIPPELGNCKSLKSLML 289

Query: 310 SFNKLSGEFPWSIVIGNFTQLQSLDFTS--NKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
           SFN LSG  P  +     +++  L F++  N+ SG L + +G  + L+ L +    FSG 
Sbjct: 290 SFNSLSGPLPLEL-----SEIPLLTFSAERNQLSGSLPSWMGKWKVLDSLLLANNRFSGE 344

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS------------ 415
           IP  + +   L  L L+ N   G++  +  L    +LE + LS N LS            
Sbjct: 345 IPHEIEDCPMLKHLSLASNLLSGSIPRE--LCGSGSLEAIDLSGNLLSGTIEEVFDGCSS 402

Query: 416 ----LLTKVTSNTTSQK------FTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHG 464
               LLT    N +  +         + L S N   E P  L    +LM    S NR+ G
Sbjct: 403 LGELLLTNNQINGSIPEDLWKLPLMALDLDSNNFTGEIPKSLWKSTNLMEFTASYNRLEG 462

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP-- 522
            +P+ + + ++  L  L LS N LTG   + +   G    L  L+L++N  QG +PV   
Sbjct: 463 YLPAEIGNAAS--LKRLVLSDNQLTGEIPREI---GKLTSLSVLNLNANMFQGKIPVELG 517

Query: 523 --PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDL 580
              S T   L SNN   G+IP  +  L  L+ LVLS+NNLSG +P    ++  ++ + DL
Sbjct: 518 DCTSLTTLDLGSNN-LQGQIPDKITALAQLQCLVLSYNNLSGSIPSKPSAYFHQIEMPDL 576

Query: 581 RANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSW 640
                      +F++    G+ DLS+N   G IP  L  C  L  + + +N +    P+ 
Sbjct: 577 -----------SFLQHH--GIFDLSYNRLSGPIPEELGECLVLVEISLSNNHLSGEIPAS 623

Query: 641 LGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKI 700
           L  L NLT+L L  N   G I  P+      KL+ ++L+NN+  G +P +SF    ++  
Sbjct: 624 LSRLTNLTILDLSGNALTGSI--PKEMGNSLKLQGLNLANNQLNGHIP-ESFGLLGSLVK 680

Query: 701 VNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFD 760
           +N +  K            L   V     +LK                LT + LS N   
Sbjct: 681 LNLTKNK------------LDGPVPASLGNLKE---------------LTHMDLSFNNLS 713

Query: 761 GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF 820
           G + + ++ ++ L  L ++ N   G IPS LGNLT LE LD+S N   G+IP ++  L  
Sbjct: 714 GELSSELSTMEKLVGLYIEQNKFTGEIPSELGNLTQLEYLDVSENLLSGEIPTKICGLPN 773

Query: 821 LEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECE 865
           LEF N++ N L G +P          +    N  LCGR +  +C+
Sbjct: 774 LEFLNLAKNNLRGEVPSDGVCQDPSKALLSGNKELCGRVVGSDCK 818

Receptor with a serine/threonine-protein kinase activity required for the specification of the correct number of male archesporial initials and for the subsequent specification of tapetal and middle cell layer identities. In seeds, required for enhancing cell size and the rate of embryonic development.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	887
359485824	973	PREDICTED: receptor-like protein 12-like	0.963	0.878	0.491	0.0
359490156	886	PREDICTED: receptor-like protein 12-like	0.900	0.901	0.507	0.0
359485822	993	PREDICTED: receptor-like protein 12-like	0.978	0.874	0.478	0.0
224140505	993	predicted protein [Populus trichocarpa]	0.970	0.867	0.451	0.0
147782974	1719	hypothetical protein VITISV_036826 [Viti	0.939	0.484	0.468	0.0
224140509	961	predicted protein [Populus trichocarpa]	0.934	0.862	0.451	0.0
147804670	1004	hypothetical protein VITISV_022039 [Viti	0.932	0.823	0.463	0.0
224140517	979	predicted protein [Populus trichocarpa]	0.969	0.878	0.452	0.0
224128143	923	predicted protein [Populus trichocarpa]	0.956	0.918	0.464	0.0
224140513	947	predicted protein [Populus trichocarpa]	0.971	0.910	0.458	0.0

>gi|359485824|ref|XP_003633343.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  730 bits (1884), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/930 (49%), Positives = 572/930 (61%), Gaps = 75/930 (8%)

Query: 9   SIFMQLFVPLIFF--NFTTATFSTASSVLR-LCHDDECSALLQFKESLIINDTIEESYHY 65
           ++++ +FV  + F  +F     +++SS+ R LCHD E SALLQFK+S +I++    +   
Sbjct: 4   ALYVFMFVRFLLFLSSFYLMVTNSSSSMHRPLCHDSEGSALLQFKQSFLIDEHASGNPSA 63

Query: 66  YPWSSGCRPKAASWKP----EEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSS 121
           YP       K A WK     E    DCCSWDGVEC   TGHV+ L L++SCLYGSINSSS
Sbjct: 64  YP-------KVAMWKSHGEGEREGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSS 116

Query: 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSL 181
           +LF LVHL+ L+L+ NDF  SEIP  +  LSRL  L+LS S F GQIPSE+L L  LV L
Sbjct: 117 TLFSLVHLQRLDLSDNDFNYSEIPFGVGQLSRLRSLDLSFSGFSGQIPSELLALSKLVFL 176

Query: 182 DLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCG 241
           DLS N    L+LQKP   NLV+ L++L+ L L  V+I STIP+ LA+LSSLT L L  CG
Sbjct: 177 DLSANPK--LQLQKPGLRNLVQNLTHLKKLHLSQVNISSTIPYELASLSSLTSLFLGECG 234

Query: 242 LQGRIQSSLGNL------------------------SKLLHLDLSLNELLGELPVSIGNL 277
           L G     +  L                        S L  LDL+     GELP SIG L
Sbjct: 235 LHGEFPMKIFQLPSLQYLTVRDNLDLISYLPEFQETSPLKMLDLAGTSFSGELPTSIGRL 294

Query: 278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTS 337
            SL +LD+S  N +G +P+S+ +L  L  LDLS N  SG+ P S+   N TQL  L  + 
Sbjct: 295 GSLTELDISSCNFTGSVPSSLGHLTQLYYLDLSNNHFSGQIPSSMA--NLTQLIYLSLSW 352

Query: 338 NKFS------------------------GELHASIGNLRSLEVLAIGRCNFSGRIPSSLR 373
           N F+                        GE+  S+ N+  L +L++     SG+IPSSL 
Sbjct: 353 NDFNVGTLSWLGQQTKLTYLYLNQINLIGEIPFSLVNMSQLNILSLSDNQLSGQIPSSLF 412

Query: 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVG 433
            L  L  L L  N   GT+EL  LL  LKNL  L LS N LS L+   +N T  KF  +G
Sbjct: 413 ELVNLQGLYLLSNYLNGTVELQ-LLSKLKNLIYLQLSDNRLSFLSYTRTNATLPKFKHLG 471

Query: 434 LRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
           L SCNL EFP+FL+NQH L ++ LS N+IHG IP W+ + S + L  L LS N LTGFDQ
Sbjct: 472 LGSCNLTEFPDFLQNQHELEIITLSENKIHGPIPKWVWNISKETLVTLELSENFLTGFDQ 531

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEIL 553
           +  VLP  K  L TL L SN LQGPLPVPP  TV YLVS N   GEI   +C + SLE+L
Sbjct: 532 RPFVLPWSK--LHTLRLDSNMLQGPLPVPPPSTVEYLVSGNKLTGEISPLICNMTSLELL 589

Query: 554 VLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRI 613
            LS NNLSG +P+CL +FS  L +LDL +N+  G IP        L +IDL  N FQG+I
Sbjct: 590 DLSSNNLSGRIPQCLANFSRSLFVLDLGSNSLDGPIPEICTVSHNLNVIDLGDNQFQGQI 649

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL 673
           PRSL+NC+ LE L +G+N+I DIFP WLG LP L VLIL+SN+F+G I     +  F KL
Sbjct: 650 PRSLVNCTMLEHLVLGNNKINDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRFPKL 709

Query: 674 RIIDLSNNRFTGKLPSKSFLCWNAMKIVN-TSDLKYLQDVISPKEWLLSDEVAT-YDYSL 731
           RIIDLS+N F G LPS+ F  W+AMK+ +  S L+Y+Q  ISP   L ++ + T Y YS+
Sbjct: 710 RIIDLSDNEFIGDLPSEYFQNWDAMKLTDIASGLRYMQ--ISPMIDLKNNVMITGYMYSM 767

Query: 732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL 791
            M NKG    Y+++ D   +I  S N F G IPTSI +LKG+ +LNL  N+L GHIPS L
Sbjct: 768 TMTNKGMQRFYERILDTFMAIDFSGNNFKGQIPTSIGSLKGIHLLNLGGNDLTGHIPSSL 827

Query: 792 GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFES 851
           GNLT LESLDLS N   G+IP QL  LTFLEFFNVS N+LTG IPQG+QFATF+N+SF+ 
Sbjct: 828 GNLTQLESLDLSQNKLSGEIPWQLTRLTFLEFFNVSHNHLTGHIPQGKQFATFENASFDG 887

Query: 852 NSGLCGRPLSRECESDEA--PTNEDHSKGA 879
           N GLCG PLSREC S EA  PT+    +G+
Sbjct: 888 NLGLCGSPLSRECGSSEALPPTSSSSKQGS 917

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359490156|ref|XP_003634044.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  702 bits (1812), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 427/841 (50%), Positives = 529/841 (62%), Gaps = 42/841 (4%)

Query: 37  LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKP----EEGNIDCCSWD 92
           LCHD E SALLQFK+S +I+         YP       K A WK     EEG+ DCCSWD
Sbjct: 13  LCHDSERSALLQFKQSFLIDGHASGDPSAYP-------KVAMWKSHGEGEEGS-DCCSWD 64

Query: 93  GVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLS 152
           GVEC   TGHV+ L L++SCLYGSINS+S+LF LVHL  L+L+ NDF  S+IP  +  LS
Sbjct: 65  GVECDRETGHVIGLHLASSCLYGSINSNSTLFSLVHLRRLDLSDNDFNYSQIPFGVGQLS 124

Query: 153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLD 212
           RL  L+LS   F GQIPSE+L L  LV L+LS N    L+LQKP    LV+ L++L+ L 
Sbjct: 125 RLRSLDLSSDRFAGQIPSELLALSKLVFLNLSANP--MLQLQKPGLRYLVQNLTHLKELH 182

Query: 213 LGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN-ELLGELP 271
           L  V+I STIPH LANLSSL  L L  CGL G    ++  L  L  L +  N +L+G LP
Sbjct: 183 LRQVNISSTIPHELANLSSLRTLFLRECGLHGEFPMNIFQLPSLQFLSVRYNPDLIGYLP 242

Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
                   LK L LS  + SGELPTSI  L SL +LD+S    +G  P    +G+ +QL 
Sbjct: 243 -EFQETSPLKLLYLSGTSFSGELPTSIGRLGSLTKLDISSCNFTGLVP--SPLGHLSQLS 299

Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGT 391
            LD ++N FSG++ +S+ NL  L  L +   N  G IP+SL  L  L  L ++ NS  GT
Sbjct: 300 YLDLSNNFFSGQIPSSMANLTRLTFLDLSLNNLEGGIPTSLFELVNLQYLSVADNSLNGT 359

Query: 392 MELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH 451
           +EL                 N LSLL    +N T  KF ++GL SCNL EFP+FL+NQ  
Sbjct: 360 VEL-----------------NRLSLLGYTRTNVTLPKFKLLGLDSCNLTEFPDFLQNQDE 402

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLS 511
           L +L LS N+IHG IP W+ + S +NL +L+LS NLLTGF+Q  VVLP  K  +L LD  
Sbjct: 403 LEVLFLSDNKIHGPIPKWMWNISQENLESLDLSGNLLTGFNQHPVVLPWSKLSILELD-- 460

Query: 512 SNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
           SN LQGPLP+PP  T+ Y  VS N  IGEI   +C + SL +L LS NNLSG +P+CL +
Sbjct: 461 SNMLQGPLPIPPPSTIEYYSVSRNKLIGEISPLICNMSSLILLDLSSNNLSGRIPQCLAN 520

Query: 571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630
            S  L ILDL +NN  G IP T    + L +IDL  N FQG+IPRS  NC  LE L +G+
Sbjct: 521 LSKSLFILDLGSNNLDGPIPQTCTVPNNLRVIDLGENQFQGQIPRSFANCMMLEHLVLGN 580

Query: 631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK 690
           NQI DIFP WLG LP L VLIL+SN+F+G I     +  F KLRI+DLS+N+F G LPS+
Sbjct: 581 NQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHSNFRFPKLRIVDLSDNKFIGDLPSE 640

Query: 691 SFLCWNAMKIVNTS-DLKYLQDVISPKEWLLS-DEVATYDYSLKMNNKGQIMTYDKVPDI 748
            F  W+AMK+ + + DL+Y+Q    PK  +      A Y YS+ M N+G    Y+K+PD+
Sbjct: 641 YFQNWDAMKLTDIANDLRYMQ--ARPKFQIPGYGWTAHYMYSMTMTNRGMQRFYEKIPDV 698

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
             +I  S N F G IPTSI NL G  +LNL +NNL GHIPS LG+LT LESLDLS N   
Sbjct: 699 FIAIDFSGNNFKGQIPTSIGNLNGFHLLNLGSNNLTGHIPSSLGDLTQLESLDLSQNQLS 758

Query: 809 GQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDE 868
           G+IP QL  +TFL FFNVS N+LTGPIPQG QF TF N+SF+ N GLCG PLSR C S E
Sbjct: 759 GEIPLQLTRITFLAFFNVSHNHLTGPIPQGNQFTTFPNASFDGNLGLCGSPLSRACGSSE 818

Query: 869 A 869
           A
Sbjct: 819 A 819

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359485822|ref|XP_003633342.1| PREDICTED: receptor-like protein 12-like [Vitis vinifera]

 Score =  700 bits (1806), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 458/957 (47%), Positives = 565/957 (59%), Gaps = 89/957 (9%)

Query: 1   MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTI- 59
           MGS   LF I M+    L  F+    T S++S    LCHD+E SALLQFK+S +I++   
Sbjct: 1   MGSILYLF-ILMRFLALLSSFHLI-VTNSSSSVQQPLCHDNESSALLQFKQSFLIDEYAS 58

Query: 60  EESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINS 119
           E+SY Y        PK A+WK      DCCSWDGVEC   TGHV+ L L++SCLYGSINS
Sbjct: 59  EDSYAY--------PKVATWKSHGEGSDCCSWDGVECDRETGHVIGLHLASSCLYGSINS 110

Query: 120 SSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEIL-ELVNL 178
           SS+LF LVHL  L+L+ NDF  SEIP  +  LSRL  LNLS S F GQIPSE+L  L  L
Sbjct: 111 SSTLFSLVHLRRLDLSDNDFNYSEIPHGVSQLSRLRSLNLSDSQFSGQIPSEVLLALSKL 170

Query: 179 VSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLH 238
           V LDLS N    L+LQK    NLV+ L+  + L L  V+I STIPH LANLSSLT L L 
Sbjct: 171 VFLDLSGNPM--LQLQKHGLRNLVQNLTLFKKLHLSQVNISSTIPHALANLSSLTSLRLR 228

Query: 239 SCGLQGRIQSSLGNLSKLLHLDLSLNELL------------------------GELPVSI 274
            CGL G     +  L  L  L L  N  L                        GELP S+
Sbjct: 229 ECGLHGEFPKKILQLPSLQFLSLRYNPNLNIYFPEFQETSPLKVLYLAGTSYSGELPASM 288

Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV----------- 323
           G L SL +LD+S  N +G +P+S+ +L  L  LDLS+N  SG  P  +            
Sbjct: 289 GKLSSLSELDISSCNFTGLVPSSLGHLTQLSYLDLSYNFFSGPIPSFLANLTTLTYLSLT 348

Query: 324 -----------IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSL 372
                      +G  T+L  L       +GE+ +S+ N+  L +L + +    G+IPS L
Sbjct: 349 SNNFSAGTLAWLGEQTKLTILYLDQINLNGEIPSSLVNMSELTILNLSKNQLIGQIPSWL 408

Query: 373 RNLTQLITLDLSQNSYRG------------------------TMELDFLLVSLKNLEVLS 408
            NLTQL  L L +N   G                        T+EL  +L +LKNL  L 
Sbjct: 409 MNLTQLTELYLQENKLEGPIPSSLFELVNLQYLYLHSNYLTGTVELH-MLSNLKNLTDLQ 467

Query: 409 LSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPS 468
           LS N +SLL+  ++N T  KF ++GL SCNL EFP+FL+NQ  L +L LS+N+IHG IP 
Sbjct: 468 LSYNRISLLSYTSTNATLPKFKLLGLASCNLTEFPDFLQNQQELEVLILSTNKIHGPIPK 527

Query: 469 WLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN 528
           W+ + S + L AL LS+N L+GF Q   VLP  +  +  L+LSSN LQG LPVPPS TV 
Sbjct: 528 WMWNISKETLEALFLSNNFLSGFSQVPDVLPWSR--MSILELSSNMLQGSLPVPPSSTVE 585

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT 588
           Y VS N   GEIPS +C L SL +L LS NNLSG +P+C    S  LSIL+LR NN  G 
Sbjct: 586 YSVSRNRLAGEIPSLICNLTSLSLLDLSGNNLSGSIPQCFTKLSSSLSILNLRRNNLNGP 645

Query: 589 IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648
           IP T    S L MIDLS N  QG+IP+SL +C  LE L +G+N I DIFP WLG+LP L 
Sbjct: 646 IPQTCTNTSNLRMIDLSENQLQGQIPKSLASCMMLEELVLGNNLINDIFPFWLGSLPRLQ 705

Query: 649 VLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708
           VLIL+ N+F+G I  P+ +  FSKLRIIDLS N FTG LPS+    W+AM+IV+  +L Y
Sbjct: 706 VLILRFNRFHGAIGSPKTNFEFSKLRIIDLSYNGFTGNLPSEYLKNWDAMRIVDAENLTY 765

Query: 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIA 768
           +Q V    E         Y +S  M NKG    Y+ +PDIL +I LSSNRF G IP SI 
Sbjct: 766 IQ-VDEEFEVPQYSWEEPYPFSTTMTNKGMTREYELIPDILIAIDLSSNRFHGEIPESIG 824

Query: 769 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD 828
           N  GL+ LNL NN L G IP+ L NLT LE+LDLS N    +IPQQLV+LTFL FFNVS 
Sbjct: 825 NPNGLRWLNLSNNALIGAIPTSLANLTLLEALDLSQNKLSREIPQQLVQLTFLAFFNVSH 884

Query: 829 NYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREC-ESDEAPTNEDHSKGAEESIF 884
           N+LTGPIPQG+QFATF  +SF+ N GLCG PLSR C  S+++P     SK    S F
Sbjct: 885 NHLTGPIPQGKQFATFSRASFDGNPGLCGSPLSRACGSSEQSPPTPSSSKQGSTSEF 941

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140505|ref|XP_002323623.1| predicted protein [Populus trichocarpa] gi|222868253|gb|EEF05384.1| predicted protein [Populus trichocarpa]

 Score =  695 bits (1794), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 430/952 (45%), Positives = 562/952 (59%), Gaps = 91/952 (9%)

Query: 1   MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIE 60
           M S  C  +I M   V L  F+       ++SS+  LCH+DE  ALLQ KESL IN++  
Sbjct: 1   MASPVCFLTIRMLFLVLLSLFHLRACY--SSSSMQPLCHEDESYALLQLKESLAINESAS 58

Query: 61  ESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSS 120
                YP       K ASW+ +  + DCCSWDGVEC  ++GHV+ LDLS+SCL+GSINS+
Sbjct: 59  SDPSAYP-------KVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLHGSINSN 111

Query: 121 SSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS 180
           SSLF LV L  LNL+ NDF +S++PSEI NLSRL  LNLS+S+F GQIP+EILEL  LVS
Sbjct: 112 SSLFHLVQLRRLNLSGNDFNNSKMPSEIRNLSRLFDLNLSYSNFSGQIPAEILELSKLVS 171

Query: 181 LDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC 240
           LDL  NS   L+L+KP   +LVE L+NLE L L  VSI + +P  +ANLSSL+ L L  C
Sbjct: 172 LDLRWNS---LKLRKPGLQHLVEALTNLEVLHLSGVSISAEVPQIMANLSSLSSLFLSYC 228

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELL------------------------GELPVSIGN 276
           GLQG     +  L  L  L +  N  L                        G+LP SI N
Sbjct: 229 GLQGEFPMGIFQLPNLRFLRIRYNPYLTGYLPEFQSGSQLEILYLTGTSFSGKLPASIRN 288

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV------------- 323
             S+K+LD++    SG +P+S+ NL  L  LDLS N  SG+ P S V             
Sbjct: 289 HKSMKELDVAECYFSGVIPSSLGNLTKLNYLDLSDNFFSGKIPPSFVNLLQLTNLSLSFN 348

Query: 324 ---------IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN 374
                    +GN T+L  +D       G++ +S+ NL  L  LA+     +G+IPS + N
Sbjct: 349 NFTSGTLDWLGNLTKLNRVDLRGTDSYGDIPSSLRNLTQLTFLALNENKLTGQIPSWIGN 408

Query: 375 LTQLI------------------------TLDLSQNSYRGTMELDFLLVSLKNLEVLSLS 410
            TQLI                         L+L  N + GT+EL+F L   +NL  L LS
Sbjct: 409 HTQLILLGLGANKLHGPIPESIYRLQNLGVLNLEHNLFSGTLELNFPL-KFRNLFSLQLS 467

Query: 411 SNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL 470
            N LSLL    +     K  ++ L  CNL EFP+FL++Q+HL +LDL+ N++ G+IP W 
Sbjct: 468 YNNLSLLKSNNTIIPLPKLKILTLSGCNLGEFPSFLRDQNHLGILDLADNKLEGRIPKWF 527

Query: 471 LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL 530
           ++ ST  L  L L+ NLLTGFDQ   VLP     L +L L SN LQG LP+PP     Y 
Sbjct: 528 MNMSTTTLEDLYLARNLLTGFDQSFDVLPWNN--LRSLQLHSNKLQGSLPIPPPEIYAYG 585

Query: 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP 590
           V NN   GEIP  +C L SL +L LS+NNLSG L  CLG+ S   S+L+L  N+F G IP
Sbjct: 586 VQNNKLTGEIPIVICNLISLSVLDLSNNNLSGKLTHCLGNISSTASVLNLHNNSFSGDIP 645

Query: 591 NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVL 650
           +TF     L +ID S N  + +IP+SL NC+KLE L++  N+I D+FPSWLG LP+L VL
Sbjct: 646 DTFTSGCSLKVIDFSENKLEWKIPKSLANCTKLEILNLEQNKINDVFPSWLGMLPDLRVL 705

Query: 651 ILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ 710
           IL+SN  +G+I +P  +  F +L+I+DLSNN F GKLP +    W AMK V    L Y+Q
Sbjct: 706 ILRSNGLHGVIGKPETNVEFRRLQIVDLSNNSFKGKLPLEYLRNWTAMKNVRNEHLIYMQ 765

Query: 711 DVISPKEWLLSDEVAT-YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIAN 769
             IS +  +  D +   Y +S+ + NKG +  Y+K+ D L++I LSSN F+G IP  + +
Sbjct: 766 VGISYQ--IFGDSMTIPYQFSMTITNKGVMRLYEKIQDSLSAIDLSSNGFEGGIPEVLGD 823

Query: 770 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           LK L +LNL NN L G IP  L NL  LE+LDLS N   G+IP +L +LTFLE FNVS N
Sbjct: 824 LKELHLLNLSNNFLSGGIPPSLSNLKELEALDLSQNKLSGEIPVKLAQLTFLEVFNVSHN 883

Query: 830 YLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDE---APTNEDHSKG 878
           +L+GPIP+G QF TF+N+SF++N GLCG PLS+EC +DE       ED   G
Sbjct: 884 FLSGPIPRGNQFGTFENTSFDANPGLCGEPLSKECGNDEDSLPAAKEDEGSG 935

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147782974|emb|CAN66148.1| hypothetical protein VITISV_036826 [Vitis vinifera]

 Score =  694 bits (1791), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 436/931 (46%), Positives = 545/931 (58%), Gaps = 98/931 (10%)

Query: 36   RLCHDDECS--ALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDG 93
            +LC D+E S   LL+FK+S +I     +    YP       K A+WK EEG+ DCCSWDG
Sbjct: 764  QLCDDNESSDDPLLEFKQSFVIAQHASDXPFAYP-------KVATWKSEEGS-DCCSWDG 815

Query: 94   VECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSR 153
            VEC+++TGHV+ LDL +SCLYGSINSSS+LF LVHL+ L+L+ NDF  S IPS +  LS 
Sbjct: 816  VECNKDTGHVIGLDLGSSCLYGSINSSSTLFLLVHLQSLDLSDNDFNYSNIPSGVDQLSS 875

Query: 154  LSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDL 213
            L  LNLS S F GQIPSE+L L  LV LDLS N     +LQKP+  NLV+KL +L+ LDL
Sbjct: 876  LRSLNLSSSRFSGQIPSEVLALSKLVFLDLSQNQ---XKLQKPDLRNLVQKLIHLKNLDL 932

Query: 214  GYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL------ 267
              V+I S +P  LAN SSL  L L +CGL G     +  L  L  L +  N  L      
Sbjct: 933  SQVNISSPVPDTLANYSSLXSLFLENCGLSGEFPRDILQLPSLQFLSVRNNPDLTGYLPE 992

Query: 268  ------------------GELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL 309
                              G LP S+ NL+SL +LD+S  + +G + +SI  L  L  LDL
Sbjct: 993  FQETSPLKLLTLAGTSFSGGLPASVDNLYSLNELDISSCHFTGLVSSSIGQLSQLTHLDL 1052

Query: 310  SFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP 369
            S N   G+ P S+   N +QL  L+ +SN FSGE    +G L  L  L +   N  G IP
Sbjct: 1053 SRNSFRGQIPSSLA--NLSQLTFLEVSSNNFSGEAMDWVGKLTKLTHLGLDSINLKGEIP 1110

Query: 370  SSLRNLTQLITLDLSQNSYRG-----TMELDFL-----------------LVSLKNLEVL 407
              L NLTQL  L L  N   G      M L  L                 +  L NLE+L
Sbjct: 1111 PFLANLTQLDYLSLEFNQLTGKIPSWVMNLTRLTSLALGYNKLHGPIPSSIFELVNLEIL 1170

Query: 408  SLSS-------------------------NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442
             L S                         N L L T  +SN    KF V+GL SCNL EF
Sbjct: 1171 YLRSXDLTGILELDMLLKLKKLTRLGLXDNKLLLRTDTSSNGXGPKFKVLGLASCNLGEF 1230

Query: 443  PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
            P+FL+NQ  L LL LS+N+IHGKIP W+ +   + LS ++L+HN LTGF+Q  V LP   
Sbjct: 1231 PHFLRNQDELELLKLSNNKIHGKIPKWIWNIGKETLSLMDLAHNFLTGFEQPXVXLPWXS 1290

Query: 503  RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
              L+ L+LSSN LQG LPVPPS    Y V NN F G+IP   C L  L +L LS+N LSG
Sbjct: 1291 --LIYLELSSNMLQGSLPVPPSSISTYFVENNRFTGKIPPLXCNLSLLHMLDLSNNTLSG 1348

Query: 563  LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622
            ++P CL +  + LS+L+L  NNF G IP  F   S+L MIDLS NL +G +PRSL NC+ 
Sbjct: 1349 MIPECLSNLXNSLSVLNLXGNNFHGAIPQAFEVGSKLKMIDLSQNLLEGPVPRSLTNCTV 1408

Query: 623  LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
            LE L++G+NQI D FP WLG LP L VLIL+SN+F+G I +PR +  F KLRIIDLS N 
Sbjct: 1409 LESLNLGNNQISDTFPFWLGALPELQVLILRSNRFHGAIGKPRTNFEFPKLRIIDLSYNS 1468

Query: 683  FTGKLPSKSFLCWNAMKIVNTSDLKYLQDV--ISPKEWLLSDEVATYDYSLKMNNKGQIM 740
            F+G LPS  FL W AMK ++  +  Y+Q     S + + L D    Y YS+ M NKG   
Sbjct: 1469 FSGNLPSVYFLDWIAMKSIDADNFTYMQASSGFSTQTYKLYD---NYTYSMTMTNKGMER 1525

Query: 741  TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 800
             Y+K+P I  +I  SSN+F G IPTSI  LKGL +LN   N+L G IP+ L NLT LE+L
Sbjct: 1526 VYEKIPGIFRAIDFSSNKFKGEIPTSIGTLKGLHLLNFSXNSLTGRIPTSLRNLTELEAL 1585

Query: 801  DLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPL 860
            DLS NN LG+IPQQL E+TFL FFNVS N LTGPIPQ +QF TF + S+E N GLCG PL
Sbjct: 1586 DLSQNNLLGEIPQQLTEMTFLGFFNVSHNNLTGPIPQXKQFDTFQSDSYEGNPGLCGNPL 1645

Query: 861  SREC----ESDEAPTNEDHSKGAE-ESIFRR 886
             R+C    ++   P+  +  +  E  S F R
Sbjct: 1646 IRKCGNPKQASPQPSTSEQGQDLEPASXFDR 1676

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140509|ref|XP_002323625.1| predicted protein [Populus trichocarpa] gi|222868255|gb|EEF05386.1| predicted protein [Populus trichocarpa]

 Score =  682 bits (1759), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 414/916 (45%), Positives = 550/916 (60%), Gaps = 87/916 (9%)

Query: 37  LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVEC 96
           LC+D+E  ALLQFKESL+IN++         +SS C PK ASWK +  + DCCSW+GVEC
Sbjct: 4   LCNDEESHALLQFKESLVINESASS------YSSAC-PKVASWKVDGESGDCCSWEGVEC 56

Query: 97  SENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSY 156
             ++GHV+ LDLS+SCL+GSI+S+SSLF LV L  LNLA NDF +S+IPSEI NL RL  
Sbjct: 57  DRDSGHVIGLDLSSSCLHGSIDSNSSLFHLVQLRRLNLADNDFNNSKIPSEIRNLPRLFD 116

Query: 157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV 216
           LNLS + F GQIP+EILEL  LVSLDL LNS   L+LQKP   +LVE L+NLE L L  V
Sbjct: 117 LNLSITGFTGQIPAEILELSKLVSLDLGLNS---LKLQKPGLQHLVEALTNLEVLHLSEV 173

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL--------- 267
           +I + +P  + NLSSL+ L L  CGLQG     +  L  L  L++  N  L         
Sbjct: 174 NISAKVPQVMTNLSSLSSLFLRDCGLQGEFPMGIFQLPNLRFLNIRYNPHLTGYLPEFQL 233

Query: 268 ---------------GELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFN 312
                          G+LP S+GNL S+K+ D++    SG +P+S+ NL  L  LDLS N
Sbjct: 234 GNQLEKLLLARTSFSGQLPGSLGNLKSMKEFDVAGCYFSGVIPSSLGNLTKLNYLDLSSN 293

Query: 313 KLSGEFPWSIV----------------------IGNFTQLQSLDFTSNKFSGELHASIGN 350
              G+ P S+V                      + N T+L  +D       GE+ + +GN
Sbjct: 294 VFFGKIPRSVVNLLQLTDLSLSSNNFSSGTLHWLCNLTKLNYVDLAQTNSYGEIPSCLGN 353

Query: 351 LRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME----------------- 393
           L  L  L +     +G+IPS + N TQLI+LDL  N   G +                  
Sbjct: 354 LTQLTELNLDANELTGQIPSWIGNKTQLISLDLGHNKLHGPISESIFWLPNLEILDLEEN 413

Query: 394 -----LDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI-EFPNFLK 447
                ++F L+  ++L    LS N LS++     +    K  ++GL  CNL  EFP+FL 
Sbjct: 414 LFSGTVEFGLLKSRSLVSFQLSGNNLSVIGNHNDSAALPKIQILGLGGCNLSGEFPSFLH 473

Query: 448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLT 507
            Q+HL  ++L  N+I G IP+W ++  T+ L  L+L  NLLTGF+Q + +LP     L  
Sbjct: 474 GQNHLEFVELGGNKIEGHIPTWFMNLGTETLWHLDLIGNLLTGFEQSVDILPWNN--LRY 531

Query: 508 LDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC 567
           L LS N L G LP+PP   + Y+VS+N   GEIP  +C L SL IL LS+NNLSG LP+C
Sbjct: 532 LRLSFNKLDGALPIPPHSIIIYIVSDNHLNGEIPPAICNLTSLVILQLSNNNLSGKLPQC 591

Query: 568 LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
           LG+ S+  S+LDLR N F G IP  F     L  ID S N  +G+IP+SL NC+KLE L+
Sbjct: 592 LGNISNTASVLDLRNNTFSGDIPEAFSSGCTLRAIDFSQNQLEGKIPKSLANCTKLEILN 651

Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687
           I  N+I D+FPSWLG LP L VLIL+SN+ +G+I +P+ +  F +L+I+DLS N F G L
Sbjct: 652 IEQNKITDVFPSWLGILPKLRVLILRSNRLHGVIGKPKANFEFQRLQIVDLSGNCFLGNL 711

Query: 688 PSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD 747
           P + F  W+AMK +      Y+Q V+S  +         +DYS+ M NKG +  Y+K+ +
Sbjct: 712 PLEYFRNWSAMKTIYKERPLYMQ-VVSSFQLPRYGMTYHFDYSMTMTNKGVMTLYEKIQE 770

Query: 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
            LT+I LSSNRF+G IP ++ +LK L +LNL NN L G IP  L NL  LE+LDLS N  
Sbjct: 771 FLTAIDLSSNRFEGGIPDALGDLKELYLLNLSNNFLTGRIPPSLSNLKGLEALDLSQNKL 830

Query: 808 LGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESD 867
            G+IP QL +LTFL  FNVS N L+GPIP+G QF TFD++SF+++SGLCG+PLS++C S 
Sbjct: 831 SGEIPVQLAQLTFLAVFNVSHNLLSGPIPRGNQFETFDSTSFDADSGLCGKPLSKKCGSG 890

Query: 868 E----APTNEDHSKGA 879
           E    AP  ED   G+
Sbjct: 891 EDSLPAP-KEDEGSGS 905

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147804670|emb|CAN66864.1| hypothetical protein VITISV_022039 [Vitis vinifera]

 Score =  677 bits (1748), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 429/926 (46%), Positives = 542/926 (58%), Gaps = 99/926 (10%)

Query: 29  STASSVLR--LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKP----E 82
           + +SS +R  LCHD E SALLQFK+S +I++        YP       K A WK     E
Sbjct: 25  ANSSSSMRQPLCHDSESSALLQFKQSFLIDERASADPSAYP-------KVAMWKSHGEGE 77

Query: 83  EGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSS 142
               DCCSWDGVEC   TGHV+ L L++SCLYGSINSSS+LF LVHL  L+L+ NDF  S
Sbjct: 78  GEESDCCSWDGVECDRETGHVIGLHLASSCLYGSINSSSTLFSLVHLRRLDLSDNDFNYS 137

Query: 143 EIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLV 202
            IP  +  LSRL  L+LS+S F GQIPS++L L  LV LDLS N    L+LQKP   NLV
Sbjct: 138 VIPFGVGQLSRLRSLDLSYSRFSGQIPSKLLALSKLVFLDLSANPM--LQLQKPGLRNLV 195

Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
           + L++L+ L L  V+I STIPH LA+LSSLT L L  CGL G     +  L  L +L + 
Sbjct: 196 QNLTHLKKLHLSQVNIFSTIPHELASLSSLTSLFLRECGLHGEFPMKIFQLPSLQYLSVR 255

Query: 263 LN------------------------ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI 298
            N                           GELP SIG+L SL +LD+S  N +   P+ +
Sbjct: 256 YNPDLIGYLPEFQETSPLKMLYLAGTSFYGELPASIGSLDSLTELDISSCNFTRLFPSPL 315

Query: 299 QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS----------------- 341
            ++  L  LDLS N  SG+ P    + N TQL  LD +SN FS                 
Sbjct: 316 AHIPQLSLLDLSNNSFSGQIP--SFMANLTQLTYLDLSSNDFSVGTLAWVGKQTKLTYLY 373

Query: 342 -------GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG---- 390
                  GE+ +S+ N+  L +L++ R    G+IPS L NLTQL  L L +N   G    
Sbjct: 374 LDQMNLTGEIPSSLVNMSELTILSLSRNQLIGQIPSWLMNLTQLTELYLEENKLEGPIPS 433

Query: 391 --------------------TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFT 430
                               T+EL  +L  LKNL  L LS N LSLL+   +N T   F 
Sbjct: 434 SLFELVNLQSLYLHSNYLTGTVELH-MLSKLKNLTGLLLSGNRLSLLSYTRTNATLPTFK 492

Query: 431 VVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490
           ++GL SCNL EFP+FL+NQ  L++L LS N+IHG IP W+ + S + L AL LS N LTG
Sbjct: 493 LLGLGSCNLTEFPDFLQNQDELVVLSLSDNKIHGPIPKWVWNISKETLEALRLSGNFLTG 552

Query: 491 FDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSL 550
           FDQ+ VVLP  + + L LD   N LQGPLP+PP  T+ Y V  N   GEI   +C + SL
Sbjct: 553 FDQRPVVLPWSRLYSLQLDF--NMLQGPLPIPPPSTILYSVYGNKLTGEISPLICNMSSL 610

Query: 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
           ++L L+ NNLSG +P+CL +FS  LS+LDL +N+  G IP T    + L +IDL  N F+
Sbjct: 611 KLLDLARNNLSGRIPQCLANFSKSLSVLDLGSNSLDGPIPQTCTVPNNLRVIDLGENQFR 670

Query: 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF 670
           G+IPRS  NC  LE L +G+NQI DIFP WLG LP L VLIL+SN+F+G I     +  F
Sbjct: 671 GQIPRSFANCMMLEHLVLGNNQIDDIFPFWLGALPQLQVLILRSNRFHGAIGSWHTNFRF 730

Query: 671 SKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ------DVISPKEWLLSDEV 724
            KL IIDLS N FTG LPS+ F   +AM+I++   L Y +       ++   ++++ D V
Sbjct: 731 PKLHIIDLSYNEFTGNLPSEYFQNLDAMRILDGGQLGYKKANVVQLPIVLRTKYMMGDMV 790

Query: 725 ATY-DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL 783
               D  +KM  KG    Y  +P  L +I LSSN+FDG IP SI  L GL  LNL NN L
Sbjct: 791 GPRNDTHIKMMIKGMRREYKNIPYNLMNIDLSSNKFDGEIPESIGGLVGLYSLNLSNNAL 850

Query: 784 QGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFAT 843
            G I + L NLT LE+LDLS N  LG+IPQQL +LTFL  F+VS N+LTGPIPQG+QF T
Sbjct: 851 TGPILTSLANLTQLEALDLSQNKLLGEIPQQLTQLTFLAVFSVSHNHLTGPIPQGKQFNT 910

Query: 844 FDNSSFESNSGLCGRPLSRECESDEA 869
           F NSSF+ N GLCG PLSR C S + 
Sbjct: 911 FSNSSFDGNPGLCGSPLSRVCGSSKG 936

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140517|ref|XP_002323629.1| predicted protein [Populus trichocarpa] gi|222868259|gb|EEF05390.1| predicted protein [Populus trichocarpa]

 Score =  677 bits (1746), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 431/952 (45%), Positives = 564/952 (59%), Gaps = 92/952 (9%)

Query: 1   MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIE 60
           M S  C  ++ M     L  F+   A +S+ S +  LCH+DE  ALLQ KESL+IN++  
Sbjct: 1   MASPVCFLTMRMLFLFSLSLFHLR-ACYSSPS-MQPLCHEDESYALLQIKESLVINESAS 58

Query: 61  ESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSS 120
                YP       K ASW+ +  + DCCSWDGVEC  ++GHV+ LDLS+SCLYGSI+S+
Sbjct: 59  SDPSAYP-------KVASWRVDGESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSN 111

Query: 121 SSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS 180
           SSLF+LV L  L+LA NDF  SEIPSEI NLSRL  LNLS S F GQIP+EILEL  LVS
Sbjct: 112 SSLFRLVLLRRLHLADNDFNKSEIPSEIRNLSRLFDLNLSMSGFSGQIPAEILELSKLVS 171

Query: 181 LDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC 240
           LDL +NS   L+LQKP   +LVE L+NLE L L  V+I + +P  + NLSSL+ L L  C
Sbjct: 172 LDLGVNS---LKLQKPGLQHLVEALTNLEVLHLTGVNISAKVPQIMTNLSSLSSLFLRDC 228

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELL------------------------GELPVSIGN 276
           GLQG     +  L  L  L +  N  L                        G+LPVSIGN
Sbjct: 229 GLQGEFPMGIFQLPNLRFLSIRNNPYLTGYLSEFQSGSQLEILYLAGTSFSGKLPVSIGN 288

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
           L S+K+LD++    SG +P+S+ NL  L+ LDLS N   G+ P + V  N  QL  L  +
Sbjct: 289 LKSMKELDVAACYFSGVIPSSLGNLTKLDYLDLSHNSFYGKIPSTFV--NLLQLTDLSLS 346

Query: 337 SNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME--- 393
           SN F  +    +GNL +L  + + + N  G IPSSLRNLTQL  L L  N   G ++   
Sbjct: 347 SNNFRSDTLDWLGNLTNLNYVDLTQTNSYGNIPSSLRNLTQLTVLRLHGNKLTGQIQSWI 406

Query: 394 ----------LDF---------LLVSLKNLEVLSLSSNWLS------------------- 415
                     L F          +  L+NLE L LS+N+ S                   
Sbjct: 407 GNHTQLISLYLGFNKLHGPIPESIYRLQNLEELDLSNNFFSGSLELNRFRNLNSLLLSYN 466

Query: 416 LLTKVTSNTTS---QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD 472
            L+ +TS+  +    K  ++ L  CN+ E P FL++Q+ L +L++  N++ G IP W ++
Sbjct: 467 NLSLLTSHNATFPLPKLQLLSLEGCNIGELPGFLRDQNQLEILEIGDNKLEGHIPKWFMN 526

Query: 473 PSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS 532
            ST  L AL+L+ NLLTGF+Q   VLP     L +L L+SN  QG LP+PP     Y VS
Sbjct: 527 MSTITLEALSLAGNLLTGFEQSFDVLPWNN--LRSLSLNSNKFQGSLPIPPPAIFEYKVS 584

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNT 592
           NN   GEIP  +C L SL +L LS NNLSG LP+CLG+ S   S+L+L  N+F G IP T
Sbjct: 585 NNKLNGEIPEVICNLTSLFVLDLSINNLSGKLPQCLGNKSSTASVLNLHNNSFSGDIPET 644

Query: 593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL 652
           F     L ++D S N  +G+IP+SL NC++LE L++  N I D+FPSWLG LP+L V+IL
Sbjct: 645 FTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDVFPSWLGVLPDLRVMIL 704

Query: 653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDV 712
           +SN  +G+I +P  +  F +L+I+DLSNN F GKLP + F  W AMK V   DL Y+Q  
Sbjct: 705 RSNGLHGVIGKPETNVEFPRLQIVDLSNNSFKGKLPLEYFRNWTAMKNVRNEDLIYMQAN 764

Query: 713 ISPKEWLLSDEV--ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770
            S   +L S       Y+YS+ M NKG +  Y+K+ D LT+I LSSN F+G IP  + +L
Sbjct: 765 TS---FLTSHNTMEKQYEYSMTMTNKGVMRLYEKIQDSLTAIDLSSNGFEGGIPEVLGDL 821

Query: 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY 830
           K L +LNL NN L G IP  L NL  LE+LDLS+N   G+IP QL +LTFL  FNVS N+
Sbjct: 822 KALHLLNLSNNFLSGGIPPSLSNLKELEALDLSHNKLSGEIPVQLAQLTFLAVFNVSHNF 881

Query: 831 LTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDE---APTNEDHSKGA 879
           L+G IP+G QF TFDN+SF++N GLCG PLS+EC + E       ED   G+
Sbjct: 882 LSGRIPRGNQFETFDNTSFDANPGLCGEPLSKECGNGEDSLPAAKEDEGSGS 933

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128143|ref|XP_002329092.1| predicted protein [Populus trichocarpa] gi|222869761|gb|EEF06892.1| predicted protein [Populus trichocarpa]

 Score =  676 bits (1744), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/869 (46%), Positives = 532/869 (61%), Gaps = 21/869 (2%)

Query: 15  FVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRP 74
           + PL F  F T  F   ++V  LCH  E SALL F +S  I++    S + YP       
Sbjct: 6   YGPLSFVCFLTLLFLLINTVQPLCHGVERSALLHFMQSFSISNNASISSYAYP------- 58

Query: 75  KAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNL 134
           K ASWK    + DCC WDGVEC E+TG+V+ LDL  S L+GSINS+SSLF+LVHL  LNL
Sbjct: 59  KTASWKIRGESSDCCLWDGVECDEDTGYVIGLDLGGSSLHGSINSTSSLFQLVHLRRLNL 118

Query: 135 AFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG---- 190
             NDF  S++PS +  LS L+YLNLS+S F+G++P EI EL +L SLDL  N        
Sbjct: 119 GGNDFNYSQVPSRLALLSSLTYLNLSNSMFYGEVPLEITELSHLTSLDLGRNVDSSARKL 178

Query: 191 LELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL 250
           LEL   +   L +  + LE LDL  V+I ST+P  LANLSSLTFL+L  C LQG I SS 
Sbjct: 179 LELGSFDLRRLAQNFTGLEQLDLSSVNISSTVPDALANLSSLTFLNLEDCNLQGLIPSSF 238

Query: 251 GNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLS 310
           G+L+KL +L+L  N   G++P+S+ NL  L+ L LS N+      + + NL  +  L LS
Sbjct: 239 GDLTKLGYLNLGHNNFSGQVPLSLANLTQLEVLSLSQNSFISPGLSWLGNLNKIRALHLS 298

Query: 311 FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS 370
              L GE P S+   N T++  L  ++N+ +G++   I NL  L ++ +      G IP 
Sbjct: 299 DINLVGEIPLSLR--NMTRIIQLHLSNNRLTGKIPLWISNLTQLTLVHLRHNELQGPIPE 356

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFT 430
           S+  L  L  L L  N   GT+E   +  SLK+L +L +  N L++LT ++ NTT  KF 
Sbjct: 357 SMSKLVNLEELKLEYNHLSGTIEFS-MFASLKHLTMLQIRRNNLTVLTNISDNTTLPKFK 415

Query: 431 VVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490
            + L  CNL EFP+FL++Q  L+ L L  NRI G+IP WL D   + LS L L +NL +G
Sbjct: 416 YLALGDCNLSEFPDFLRSQDELIYLHLGRNRIQGQIPKWLGDIGHKTLSILILRNNLFSG 475

Query: 491 FDQ--QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLD 548
           F+Q  +L +L      L  L+L SN L+G LP+PP   + Y +SNNS  GEI   LC L 
Sbjct: 476 FEQSWELSLLTK----LQWLELDSNKLEGQLPIPPPSLIGYSISNNSLTGEILPSLCNLR 531

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
           SL  L LS+N LSG+ P CLG FSD L +L+L  N F G IP  F  ES L MIDLSHN 
Sbjct: 532 SLGFLDLSYNKLSGMFPNCLGDFSDSLLVLNLSNNFFHGRIPQAFRDESNLRMIDLSHNQ 591

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
            +G++PRSL NC  +E LD+  N+I D FP WL  LP L VLIL+SN+F+G I+ P    
Sbjct: 592 LEGQLPRSLTNCRMMEILDLSYNRISDKFPFWLANLPELQVLILRSNQFFGSIKSPGAML 651

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYD 728
            F KL+IIDLS N FTG LPS+ F    +M+  +  +  Y+Q + + +  + S +  TY 
Sbjct: 652 EFRKLQIIDLSYNNFTGILPSEFFQTLRSMRFSDLKEFTYMQTIHTFQLPVYSRDF-TYR 710

Query: 729 YSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788
           Y + + NKG  M Y ++P+++ +I LSSN F G IP SI   + +  LNL NN+L G IP
Sbjct: 711 YEINLANKGVYMKYWQIPNVIAAIDLSSNAFQGDIPQSIGTREKVNALNLSNNHLSGDIP 770

Query: 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSS 848
           S LGNL NLESLDLS N   G+IPQ L +LTFL +FNVS N L GPIPQG+QF TFDNSS
Sbjct: 771 SVLGNLANLESLDLSQNMLSGEIPQYLTQLTFLAYFNVSHNQLEGPIPQGKQFNTFDNSS 830

Query: 849 FESNSGLCGRPLSRECESDEAPTNEDHSK 877
           +E NSGL  + L ++ E  E P + +  K
Sbjct: 831 YEGNSGLYMKHLPKKSECSEPPQHPNLPK 859

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140513|ref|XP_002323627.1| predicted protein [Populus trichocarpa] gi|222868257|gb|EEF05388.1| predicted protein [Populus trichocarpa]

 Score =  672 bits (1735), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 417/909 (45%), Positives = 543/909 (59%), Gaps = 47/909 (5%)

Query: 1   MGSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIE 60
           M SS C  ++ M     L FF+       ++ S+  LCHD+E  AL+QFKESL+I+    
Sbjct: 1   MASSVCFLTMRMLSLFLLSFFHLRAC--HSSPSMQPLCHDEESHALMQFKESLVIH---- 54

Query: 61  ESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSS 120
            S  Y P      PK ASW  +  + DCCSWDGVEC  ++GHV+ LDLS+SCLYGSI+S+
Sbjct: 55  RSASYDP---AAYPKVASWSVDRESGDCCSWDGVECDGDSGHVIGLDLSSSCLYGSIDSN 111

Query: 121 SSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS 180
           SSLF LV L  L+LA NDF +S+IPSEI NLSRL  L+LS+SSF GQIP+EILEL  LVS
Sbjct: 112 SSLFHLVQLRRLDLADNDFNNSKIPSEIRNLSRLFDLDLSYSSFSGQIPAEILELSKLVS 171

Query: 181 LDLSLNSGYGLELQKPNFANLVEKL------------------------SNLETLDLGYV 216
           LDL  NS   L+LQKP   +LV+ L                        S L+TL L   
Sbjct: 172 LDLGWNS---LKLQKPGLEHLVKALINLRFLSIQHNPYLSGYFPEIHWGSQLQTLFLAGT 228

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
           S    +P ++ NL SL    +  C   G I SSLGNL+KL +LDLS N   G++P +  N
Sbjct: 229 SFSGKLPESIGNLKSLKEFDVGDCNFSGVIPSSLGNLTKLNYLDLSFNFFSGKIPSTFVN 288

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
           L  +  L LS NN        + NL +L+ +DL      G  P S+   N TQL +L   
Sbjct: 289 LLQVSYLSLSFNNFRCGTLDWLGNLTNLKIVDLQGTNSYGNIPSSLR--NLTQLTALALH 346

Query: 337 SNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF 396
            NK +G++ + IGN   L  L +G     G IP S+  L  L  LDL+ N + GT++L+ 
Sbjct: 347 QNKLTGQIPSWIGNHTQLISLYLGVNKLHGPIPESIYRLQNLEQLDLASNFFSGTLDLN- 405

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
           LL+  +NL  L LS   LSLL    +     K  ++ L   NL EFP+FL++Q+HL LLD
Sbjct: 406 LLLKFRNLVSLQLSYTNLSLLNSNNATIPQSKLELLTLSGYNLGEFPSFLRDQNHLELLD 465

Query: 457 LSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           L+ +++ G+IP W ++ ST  L AL L+ NLLTGF+Q   VLP   + L +L L SN LQ
Sbjct: 466 LADDKLDGRIPKWFMNMSTITLEALCLTGNLLTGFEQSFDVLPW--KNLRSLQLYSNKLQ 523

Query: 517 GPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLS 576
           G LP+PP     Y V NN   GEIP  +C L SL +L LS+NNLSG LP CLG+ S   S
Sbjct: 524 GSLPIPPPAIFEYKVWNNKLTGEIPKVICDLTSLSVLELSNNNLSGKLPPCLGNKSRTAS 583

Query: 577 ILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI 636
           +L+LR N+F G IP TF     L ++D S N  +G+IP+SL NC++LE L++  N I D+
Sbjct: 584 VLNLRHNSFSGDIPETFTSGCSLRVVDFSQNKLEGKIPKSLANCTELEILNLEQNNINDV 643

Query: 637 FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWN 696
           FPSWLG LP+L V+IL+SN  +G+I  P  +  F  L+I+DLSNN F GKLP + F  W 
Sbjct: 644 FPSWLGILPDLRVMILRSNGLHGVIGNPETNVEFPTLQIVDLSNNSFKGKLPLEYFRNWT 703

Query: 697 AMK-IVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS 755
           AMK + N   L Y+Q   S +   +      Y+YS+ M NKG +  Y+K+ D LT I LS
Sbjct: 704 AMKNVRNDQHLIYMQANASFQTSQIR-MTGKYEYSMTMTNKGVMRLYEKIQDSLTVIDLS 762

Query: 756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQL 815
            N F+G IP  + +LK L +LNL NN L G IP  L NL  LE+LDLS N   G+IP QL
Sbjct: 763 RNGFEGGIPEVLGDLKALHLLNLSNNFLSGGIPPSLSNLKKLEALDLSQNKLSGEIPVQL 822

Query: 816 VELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREC----ESDEAPT 871
            +LTFL  FNVS N+L+G IP+G QF TFDN+SF++N  LCG PLS+EC    E      
Sbjct: 823 AQLTFLAVFNVSHNFLSGRIPRGNQFETFDNTSFDANPALCGEPLSKECGNNGEDSLPAA 882

Query: 872 NEDHSKGAE 880
            ED   G +
Sbjct: 883 KEDEGSGYQ 891

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	887
TAIR|locus:2144392	957	RLP53 "receptor like protein 5	0.408	0.378	0.417	1.4e-111
TAIR|locus:2119430	741	RLP47 "receptor like protein 4	0.740	0.886	0.384	5.7e-107
TAIR|locus:2825762	994	RLP6 "AT1G45616" [Arabidopsis	0.832	0.742	0.358	2.5e-106
TAIR|locus:2085537	894	RLP34 "AT3G11010" [Arabidopsis	0.397	0.394	0.416	1.7e-105
TAIR|locus:2205005	1019	RLP7 "AT1G47890" [Arabidopsis	0.852	0.741	0.350	4.2e-102
TAIR|locus:2129246	891	RLP50 "receptor like protein 5	0.861	0.857	0.339	1.9e-99
TAIR|locus:2046357	890	RLP23 "receptor like protein 2	0.732	0.730	0.369	4.2e-95
TAIR|locus:2046585	808	RLP27 "receptor like protein 2	0.666	0.731	0.379	1.1e-94
TAIR|locus:2829370	915	RLP40 "receptor like protein 4	0.842	0.816	0.338	2.7e-93
TAIR|locus:2046515	864	RLP24 "receptor like protein 2	0.809	0.831	0.334	1.3e-91

TAIR|locus:2144392 RLP53 "receptor like protein 53" [Arabidopsis thaliana (taxid:3702)]

 Score = 680 (244.4 bits), Expect = 1.4e-111, Sum P(2) = 1.4e-111
 Identities = 158/378 (41%), Positives = 220/378 (58%)

Query:   505 LLTLDLSSNNLQG-PLPVPPSRTVNYLV-SNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
             L  ++LS+N L G   P  P  ++ YL+ SNN+FIG+IPS++C L SL  L LS NN +G
Sbjct:   536 LYYVNLSNNTLIGFQRPSKPEPSLLYLLGSNNNFIGKIPSFICGLRSLNTLDLSDNNFNG 595

Query:   563 LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622
              +PRC+G     LS+L+LR N+  G +P    +  R   +D+ HN   G++PRSL   S 
Sbjct:   596 SIPRCMGHLKSTLSVLNLRQNHLSGGLPKQIFEILR--SLDVGHNQLVGKLPRSLSFFST 653

Query:   623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
             LE L++  N+I D FP WL +LP L VL+L+SN F+G I E      F +LRIID+S+NR
Sbjct:   654 LEVLNVESNRINDTFPFWLSSLPKLQVLVLRSNAFHGPIHEAT----FPELRIIDISHNR 709

Query:   683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
             F G LP++ F+ W+AM     S L   +D  S ++++ S     Y  S+ + NKG  M  
Sbjct:   710 FNGTLPTEYFVKWSAM-----SSLGKNEDQ-SNEKYMGSG--LYYQDSMVLMNKGVAMEL 761

Query:   743 DKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDL 802
              ++  I T++  S NRF+G IP SI  LK             GH+PS +GNLT LESLD+
Sbjct:   762 VRILTIYTAVDFSGNRFEGEIPKSIGLLKELLVLSLSNNAFSGHMPSSMGNLTALESLDV 821

Query:   803 SNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSR 862
             S N   G+IPQ+L +L+FL + N S N L G +P G+QF T + S+FE N GL G  L  
Sbjct:   822 SKNKLTGEIPQELGDLSFLAYMNFSHNQLAGLVPGGQQFLTQNCSAFEDNLGLFGSSLEE 881

Query:   863 ECESDEAPTNEDHSKGAE 880
              C     P +    +  E
Sbjct:   882 VCRDIHTPASHQQFETPE 899

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2119430 RLP47 "receptor like protein 47" [Arabidopsis thaliana (taxid:3702)]

 Score = 1058 (377.5 bits), Expect = 5.7e-107, P = 5.7e-107
 Identities = 266/691 (38%), Positives = 360/691 (52%)

Query:   211 LDLGYVSIRSTIPHN--LANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXX 268
             LDL Y  +   +  N  L  L  L  L L S  L G +                      
Sbjct:    29 LDLQYSHLNGPLRSNSSLFRLQHLQKLVLGSNHLSGILPDSIGNLKRLKVLVLVNCNLFG 88

Query:   269 XXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL----------DLSFNKLSGEF 318
               P S+GNL  L  LDLS N+ + E P S+ NL  L ++          DL  N+L G  
Sbjct:    89 KIPSSLGNLSYLTHLDLSYNDFTSEGPDSMGNLNRLTDMLLKLSSVTWIDLGDNQLKGML 148

Query:   319 PWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQL 378
             P ++   + ++L++ D + N FSG + +S+  + SL +L +GR +FSG  P  + N++  
Sbjct:   149 PSNM--SSLSKLEAFDISGNSFSGTIPSSLFMIPSLILLHLGRNDFSG--PFEIGNISSP 204

Query:   379 ITLDLSQNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTT-SQKFTVVGLRSC 437
               L L  N  R     D + +S+ +               K++S  +       +GL SC
Sbjct:   205 SNLQLL-NIGRNNFNPDIVDLSIFSPLLSLGYLDVSGINLKISSTVSLPSPIEYLGLLSC 263

Query:   438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVV 497
             N+ EFP FL+NQ  L  LD+S+N+I G++P WL   S               GF+    V
Sbjct:   264 NISEFPKFLRNQTSLEYLDISANQIEGQVPEWLW--SLPELRYVNISHNSFNGFEGPADV 321

Query:   498 LPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS-NNSFIGEIPSWLCKLDSLEILVLS 556
             + GG+  LL LD+SSN  Q P P+ P  ++NYL S NN F GEIP  +C+LD+L ILVLS
Sbjct:   322 IQGGRE-LLVLDISSNIFQDPFPLLPVVSMNYLFSSNNRFSGEIPKTICELDNLRILVLS 380

Query:   557 HNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRS 616
             +NN SG +PRC  +    L +L LR NN  G  P   +    L   D+ HNLF G +P+S
Sbjct:   381 NNNFSGSIPRCFENLH--LYVLHLRNNNLSGIFPEEAISH-HLQSFDVGHNLFSGELPKS 437

Query:   617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII 676
             LINCS +EFL++ DN+I D FPSWL  LPNL +L+L+SN+FYG I  P     FS+LRI 
Sbjct:   438 LINCSDIEFLNVEDNRINDTFPSWLELLPNLQILVLRSNEFYGPIFSPGDSLSFSRLRIF 497

Query:   677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW-LLSDEVATYDYSLKMNN 735
             D+S NRFTG LPS  F+ W+ M  V   D + +Q  ++  +       VA  +  LKM  
Sbjct:   498 DISENRFTGVLPSDYFVGWSVMSSVVDIDGRIIQYTVTGIDRDFYHKSVALINKGLKMEL 557

Query:   736 KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLT 795
              G   T  K  D+      S NR +G IP SI  LK             GHIP  L NL+
Sbjct:   558 VGSGFTIYKTIDV------SGNRLEGDIPESIGLLKEVIVLSMSNNAFTGHIPPSLSNLS 611

Query:   796 NLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGL 855
             NL+SLDLS N   G IP +L +LTFLE+ N S N L GPIP+  Q  T D+SSF  N GL
Sbjct:   612 NLQSLDLSQNRLSGSIPGELGKLTFLEWMNFSHNRLEGPIPETTQIQTQDSSSFTENPGL 671

Query:   856 CGRPLSRECESDEAPTNE--DHSKGAEESIF 884
             CG PL ++C  +E  T +  D  K  E+ +F
Sbjct:   672 CGAPLLKKCGGEEEATKQEQDEDKEEEDQVF 702

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0006863 "purine nucleobase transport" evidence=RCA

TAIR|locus:2825762 RLP6 "AT1G45616" [Arabidopsis thaliana (taxid:3702)]

 Score = 1052 (375.4 bits), Expect = 2.5e-106, P = 2.5e-106
 Identities = 282/786 (35%), Positives = 397/786 (50%)

Query:   102 HVMKLDLSNSCLYG--SINSSSSLF-KLVHLEWLNLAFNDFKS----SEIPSEIINLSRL 154
             +++ LDLS+S  Y   S++    LF  L+ L ++NL   D  S    S IP E   +  L
Sbjct:   173 NLVSLDLSSSFPYSPSSLSIEKPLFLHLLALNFMNLRELDMSSVDISSAIPIEFSYMWSL 232

Query:   155 SYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETLDLG 214
               L L   +  G+ P+ +                  LE   PNF     + ++L  L + 
Sbjct:   233 RSLTLKGCNLLGRFPNSVLLIPNLESISLDH--NLNLEGSLPNFL----RNNSLLKLSIY 286

Query:   215 YVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVSI 274
               S   TIP++++NL  LT L L      GRI                        P S+
Sbjct:   287 NTSFSGTIPNSISNLKHLTSLKLQQSAFSGRIPSSLRSLSHLSNLVLSENNFVGEIPSSV 346

Query:   275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD 334
              NL  L   D+S NNL+G  P+S+ NL  L  +D+  N  +G  P +I     +QL +L+
Sbjct:   347 SNLKQLTLFDVSDNNLNGNFPSSLLNLNQLRYIDICSNHFTGFLPPTI-----SQLSNLE 401

Query:   335 FTS---NKFSGELHASIGNLRSLEVLAIG--RCNFSGRIP--SSLRNLTQLITLDLSQNS 387
             F S   N F+G + +S+ N+ SL  L +   + N +  I   S L NL +L+   L  N+
Sbjct:   402 FFSACDNSFTGSIPSSLFNISSLTTLGLSYNQLNDTTNIKNISLLHNLQRLL---LDNNN 458

Query:   388 YRGT-MELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTT-SQKFTVVGLRSCNLIEFPNF 445
             ++ + ++LD  L SLK               T +TS++  S     + L  CN+IEFP F
Sbjct:   459 FKASQVDLDVFL-SLKRLVSLALSGIPLST-TNITSDSEFSSHLEYLELSGCNIIEFPEF 516

Query:   446 LKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFL 505
             ++NQ +L  +DLS+N I G++P+WL                   GF+  L  L G K  +
Sbjct:   517 IRNQRNLSSIDLSNNNIKGQVPNWLW--RLPELSTVDLSNNSLIGFNGSLKALSGSK--I 572

Query:   506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
             + LDLSSN  QGPL +PP     +L S N+F G IP  +C L +  IL LS+NNL GL+P
Sbjct:   573 VMLDLSSNAFQGPLFMPPRGIQYFLGSYNNFTGYIPPSICGLANPLILDLSNNNLHGLIP 632

Query:   566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625
             RCL +    LS+L+LR N+  G++PN FM    L  +D+SHN  +G++P SL  CS LE 
Sbjct:   633 RCLEAQMSSLSVLNLRNNSLDGSLPNIFMNAKVLSSLDVSHNTLEGKLPASLAGCSALEI 692

Query:   626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE-PRIDCGFSKLRIIDLSNNRFT 684
             L++  N I D FP WL +LP L VL+L+SN F G +     +  GF  LRI D+S+N F 
Sbjct:   693 LNVESNNINDTFPFWLNSLPKLQVLVLRSNNFRGTLHNVDGVWFGFPLLRITDVSHNDFV 752

Query:   685 GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDK 744
             G LPS  F+ W A+    T +L+Y+ D   P+++        Y  SL + NKG  M   +
Sbjct:   753 GTLPSDYFMNWTAISKSET-ELQYIGD---PEDY-------GYYTSLVLMNKGVSMEMQR 801

Query:   745 VPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSN 804
             +    T I  + N+  G IP S+  LK             GHIPS L NLTNLESLD+S 
Sbjct:   802 ILTKYTVIDFAGNKIQGKIPESVGILKELHVLNLSSNAFTGHIPSSLANLTNLESLDISQ 861

Query:   805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREC 864
             N   G+IP +L  L+ LE+ NVS N L G IPQG QF   + SS+E N G+ G  L   C
Sbjct:   862 NKIGGEIPPELGTLSSLEWINVSHNQLVGSIPQGTQFHRQNCSSYEGNPGIYGSSLKDVC 921

Query:   865 ESDEAP 870
                 AP
Sbjct:   922 GDIHAP 927

GO:0006952 "defense response" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0016020 "membrane" evidence=IDA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2085537 RLP34 "AT3G11010" [Arabidopsis thaliana (taxid:3702)]

 Score = 646 (232.5 bits), Expect = 1.7e-105, Sum P(2) = 1.7e-105
 Identities = 154/370 (41%), Positives = 209/370 (56%)

Query:   505 LLTLDLSSNNLQG-PLPVPPSRTVNYLV-SNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
             L  L+LS+N   G   P  P  ++ YL+ SNN+F G+IPS++C+L SL  L LS NN SG
Sbjct:   474 LFYLNLSNNTFIGFQRPTKPEPSMAYLLGSNNNFTGKIPSFICELRSLYTLDLSDNNFSG 533

Query:   563 LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622
              +PRC+ +    LS L+LR NN  G  P    +  R   +D+ HN   G++PRSL   S 
Sbjct:   534 SIPRCMENLKSNLSELNLRQNNLSGGFPEHIFESLR--SLDVGHNQLVGKLPRSLRFFSN 591

Query:   623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
             LE L++  N+I D+FP WL +L  L VL+L+SN F+G I +      F KLRIID+S+N 
Sbjct:   592 LEVLNVESNRINDMFPFWLSSLQKLQVLVLRSNAFHGPINQAL----FPKLRIIDISHNH 647

Query:   683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
             F G LP++ F+ W+ M  + T    Y +D  S   +L S     Y  S+ + NKG     
Sbjct:   648 FNGSLPTEYFVEWSRMSSLGT----Y-EDG-SNVNYLGS---GYYQDSMVLMNKGVESEL 698

Query:   743 DKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDL 802
              ++  I T++  S N+F+G IP SI  LK             GHIPS +GNLT LESLD+
Sbjct:   699 VRILTIYTAVDFSGNKFEGEIPKSIGLLKELHVLNLSNNAFTGHIPSSIGNLTALESLDV 758

Query:   803 SNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSR 862
             S N   G+IPQ++  L+ L + N S N LTG +P G+QF T   SSFE N GL G  L  
Sbjct:   759 SQNKLYGEIPQEIGNLSLLSYMNFSHNQLTGLVPGGQQFLTQRCSSFEGNLGLFGSSLEE 818

Query:   863 ECESDEAPTN 872
              C     P +
Sbjct:   819 VCRDIHTPAS 828

GO:0005575 "cellular_component" evidence=ND

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2205005 RLP7 "AT1G47890" [Arabidopsis thaliana (taxid:3702)]

 Score = 1012 (361.3 bits), Expect = 4.2e-102, P = 4.2e-102
 Identities = 280/798 (35%), Positives = 395/798 (49%)

Query:   103 VMKLDLSNSCLYGS-----INSSSSLFKLVHLEWLNLAFNDFK----SSEIPSEIINLSR 153
             ++ LDLS+S  +G      ++   S   L+     NL   D      SSEIP E  N+  
Sbjct:   193 LVSLDLSSSDFFGDESFHYLSIDKSFLPLLARNLRNLRELDMSYVKISSEIPEEFSNIRS 252

Query:   154 LSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETLDL 213
             L  LNL+  + FG+ PS I               G    L + N     E  S L+ L +
Sbjct:   253 LRSLNLNGCNLFGEFPSSILLIPNLQSIDL----GNNPNL-RGNLPVFHENNSLLK-LTI 306

Query:   214 GYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVS 273
              Y S    IP ++++L +LT L+L      G+I                        P S
Sbjct:   307 LYTSFSGAIPDSISSLKNLTSLTLSVSYFSGKIPFSLGNLSHLSHLSLSSNNLIGEIPSS 366

Query:   274 IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333
             IGNL+ L    +  N LSG LP ++ NL  L  + LS N+ +G  P SI     +QL  L
Sbjct:   367 IGNLNQLTNFYVGGNKLSGNLPATLSNLTKLNTISLSSNQFTGSLPPSI-----SQLSKL 421

Query:   334 DF---TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP-SSLRNLTQLITLDLSQNSYR 389
              F     N F G + + +  + SL  + +     +  +   ++  L  L T  +   +Y 
Sbjct:   422 KFFFADDNPFIGAILSPLLKIPSLTRIHLSYNQLNDLVGIENIFMLPNLETFYIYHYNYT 481

Query:   390 GTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQ 449
                 LD  + S                 T +TS+  S     + LRSCN+ +FP F++  
Sbjct:   482 KVRPLDLNVFSSLKQLGTLYISRIPISTTNITSDFPSN-LEYLSLRSCNITDFPEFIRKG 540

Query:   450 HHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLD 509
              +L +LDLS+N+I G++P WL    T             +GF   +   P  +  L ++D
Sbjct:   541 RNLQILDLSNNKIKGQVPDWLWRMPT--LNSVDLSNNSLSGFHVSVKASPESQ--LTSVD 596

Query:   510 LSSNNLQGPLPVPPSRTVNYLV-SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCL 568
             LSSN  QGPL +P S+++ Y   SNN+F G+IP  +C L SLEIL LS+NNL+G LP CL
Sbjct:   597 LSSNAFQGPLFLP-SKSLRYFSGSNNNFTGKIPRSICGLSSLEILDLSNNNLNGSLPWCL 655

Query:   569 GSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628
              +    LS LDLR N+  G++P  FM  ++L  +D+SHN  +G++P SL  CS LE L++
Sbjct:   656 ETLMSSLSDLDLRNNSLSGSLPEIFMNATKLRSLDVSHNRMEGKLPGSLTGCSSLEVLNV 715

Query:   629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE-PRIDCGFSKLRIIDLSNNRFTGKL 687
             G N+I D+FP  L +L  L VL+L SNKF+G +     +  GF +L+IID+S+N F G L
Sbjct:   716 GSNRINDMFPFELNSLQKLQVLVLHSNKFHGTLHNVDGVWFGFPQLQIIDVSHNDFFGIL 775

Query:   688 PSKSFLCWNAM--KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745
             PS  F+ W AM  K  N  + +Y+Q+   P  +     +  Y  SL + +KG  M  ++V
Sbjct:   776 PSDYFMNWTAMSSKKDNNIEPEYIQN---PSVY--GSSLGYYT-SLVLMSKGVSMEMERV 829

Query:   746 PDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNN 805
               I T+I LS N+  G IP SI  LK             GHIPS L NL NLESLD+S N
Sbjct:   830 LTIYTAIDLSGNQLHGKIPDSIGLLKELRILNMSSNGFTGHIPSSLANLKNLESLDISQN 889

Query:   806 NFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECE 865
             N  G+IP +L  L+ L + NVS N L G IPQG QF     SS+E N GL G  L   C 
Sbjct:   890 NISGEIPPELGTLSSLAWINVSHNQLVGSIPQGTQFQRQKCSSYEGNPGLNGPSLENVCG 949

Query:   866 --SDEAPTNEDHSKGAEE 881
                +  PT  +  +  EE
Sbjct:   950 HIKESTPTQTEPLETKEE 967

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC;RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2129246 RLP50 "receptor like protein 50" [Arabidopsis thaliana (taxid:3702)]

 Score = 987 (352.5 bits), Expect = 1.9e-99, P = 1.9e-99
 Identities = 281/827 (33%), Positives = 405/827 (48%)

Query:    77 ASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAF 136
             A W+    N DCCSW G+ C   TG V++LDL NS L G + S+SSLF+L HL+ L+L++
Sbjct:    58 AKWR---NNTDCCSWGGISCDPKTGVVVELDLGNSDLNGRLRSNSSLFRLQHLQSLDLSY 114

Query:   137 NDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEIXXXXXXXXXXXXXXXGYGLELQKP 196
             ND  S  +P    N   L  LNL   + FG+IP+ +                Y  +L   
Sbjct:   115 NDL-SCTLPDSSGNFKYLRVLNLLGCNLFGEIPTSLRSLSYLTDLDLS----YNDDLTG- 168

Query:   197 NFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQXXXXXXXXX 256
                + +  L +L  L L        IP +L NL+ LT L L      G +          
Sbjct:   169 EILDSMGNLKHLRVLSLTSCKFTGKIPSSLGNLTYLTDLDLSWNYFTGELPDSMGNLKSL 228

Query:   257 XXXXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
                           P S+G+L +L  LD+S N  + E P S+ +L          N+L+ 
Sbjct:   229 RVLNLHRCNFFGKIPTSLGSLSNLTDLDISKNEFTSEGPDSMSSL----------NRLT- 277

Query:   317 EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT 376
             +F   +++ N + L ++D +SN+F   L +++ +L  LE   I   +FSG IPSSL  L 
Sbjct:   278 DF--QLMLLNLSSLTNVDLSSNQFKAMLPSNMSSLSKLEAFDISGNSFSGTIPSSLFMLP 335

Query:   377 QLITLDLSQNSYRGTME---------LDFLLVSLKNXXXXXXXXXXXXXXTKVTS----N 423
              LI LDL  N + G ++         L  L +   N                  S    +
Sbjct:   336 SLIKLDLGTNDFSGPLKIGNISSPSNLQELYIGENNINGPIPRSILKLVGLSALSLSFWD 395

Query:   424 TTS-QKFTVV----GLRSCNLIEFPNFLKNQHHL----MLLDLSSNRIHGKIPSWLLDPS 474
             T     F++      LRS +L      + + HHL    M L LSS  I  + P +L +  
Sbjct:   396 TGGIVDFSIFLQLKSLRSLDLSGINLNISSSHHLPSHMMHLILSSCNI-SQFPKFL-ENQ 453

Query:   475 TQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNN 534
             T                 + L  LP     L  ++++ N   G L + P+   +++ S+N
Sbjct:   454 TSLYHLDISANQIEGQVPEWLWRLPT----LRYVNIAQNAFSGELTMLPNPIYSFIASDN 509

Query:   535 SFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFM 594
              F GEIP  +C++ +L   VLS+NN SG +P C    +  LSIL LR N+  G IP   +
Sbjct:   510 KFSGEIPRAVCEIGTL---VLSNNNFSGSIPPCFEISNKTLSILHLRNNSLSGVIPEESL 566

Query:   595 KESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS 654
                 L  +D+  N   G+ P+SLINCS L+FL++ +N+I D FPSWL +LPNL +L+L+S
Sbjct:   567 -HGYLRSLDVGSNRLSGQFPKSLINCSYLQFLNVEENRINDTFPSWLKSLPNLQLLVLRS 625

Query:   655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVIS 714
             N+F+G I  P     FSKLR  D+S NRF+G LPS  F+ W+ M    +S +  + +  +
Sbjct:   626 NEFHGPIFSPGDSLSFSKLRFFDISENRFSGVLPSDYFVGWSVM----SSFVDIIDN--T 679

Query:   715 PKEWLLSDEVATYDYSLKMNNKGQIMTY-DKVPDILTSIILSSNRFDGMIPTSIANLKGX 773
             P   ++ D+  ++  S+ +  KG  M       +I  +I +S NR +G IP SI  LK  
Sbjct:   680 PGFTVVGDDQESFHKSVVLTIKGLNMELVGSGFEIYKTIDVSGNRLEGDIPESIGILKEL 739

Query:   774 XXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833
                        GHIP  L NL+NL+SLDLS N   G IP +L ELTFL   N S N L G
Sbjct:   740 IVLNMSNNAFTGHIPPSLSNLSNLQSLDLSQNRLSGSIPGELGELTFLARMNFSYNMLEG 799

Query:   834 PIPQGRQFATFDNSSFESNSGLCGRPLSREC--ESDEAPTNEDHSKG 878
             PIPQG Q  + ++SSF  N GLCG PL ++C  E +E    E+  KG
Sbjct:   800 PIPQGTQIQSQNSSSFAENPGLCGAPLQKKCGGEEEEDKEKEEKDKG 846

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046357 RLP23 "receptor like protein 23" [Arabidopsis thaliana (taxid:3702)]

 Score = 946 (338.1 bits), Expect = 4.2e-95, P = 4.2e-95
 Identities = 251/679 (36%), Positives = 330/679 (48%)

Query:   201 LVEKLSNLETLDLGYVSIRSTIPHN--LANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXX 258
             LV  L  L  LDL Y     T+  N  L  L  L +L+L        +            
Sbjct:   165 LVRGLRKLIVLDLSYNHFSGTLNPNSSLFELHQLRYLNLAFNNFSSSLPSKFGNLHRLEN 224

Query:   259 XXXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF 318
                         P +I NL  L KL L  N L+   P  +QNL +L ELDLS+NK  G  
Sbjct:   225 LILSSNGFSGQVPSTISNLTRLTKLYLDQNKLTSSFPL-VQNLTNLYELDLSYNKFFGVI 283

Query:   319 PWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS-LEVLAIGRCNFSGRIPSSLRNLTQ 377
             P S++   F  L  L    N  +G +  S  +  S LE++ +G  +F G+I   +  L  
Sbjct:   284 PSSLLTLPF--LAHLALRENNLAGSVEVSNSSTSSRLEIMYLGSNHFEGQILEPISKLIN 341

Query:   378 LITLDLS--QNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLR 435
             L  LDLS    SY   ++L   L SL++              +      T +  T   LR
Sbjct:   342 LKHLDLSFLNTSYPIDLKLFSSLKSLRSLDLSGNSISSASLSSDSYIPLTLEMLT---LR 398

Query:   436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQL 495
              C++ EFPN LK    L+ +D+S+NR+ GKIP WL   S              TGF    
Sbjct:   399 HCDINEFPNILKTLKELVYIDISNNRMKGKIPEWLW--SLPLLQSVTLGNNYFTGFQGSA 456

Query:   496 VVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVL 555
              +L      LL LD  SNN +G LP  P     + V++NSF  EIP  +C   SL  + L
Sbjct:   457 EILVNSSVLLLYLD--SNNFEGALPDLPLSIKGFGVASNSFTSEIPLSICNRSSLAAIDL 514

Query:   556 SHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPR 615
             S+NN +G +P CL +    L ++ LR NN  G+IP+     + L  +D+SHN   G++PR
Sbjct:   515 SYNNFTGPIPPCLRN----LELVYLRNNNLEGSIPDALCDGASLRTLDVSHNRLTGKLPR 570

Query:   616 SLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID-CGFSKLR 674
             S +NCS L+FL + +N+I D FP WL  LPNL VL L+SN+FYG I  P     GF +LR
Sbjct:   571 SFVNCSSLKFLSVINNRIEDTFPFWLKALPNLQVLTLRSNRFYGPISPPHQGPLGFPELR 630

Query:   675 IIDLSNNRFTGKLPSKSFLCWNAM-KIVNTSDLKYLQDVISPKEWLLSDEVATYDYS--L 731
             I ++S+N+FTG LP   F+ W A  + +N     Y+  V   K   L DE   Y Y+  L
Sbjct:   631 IFEISDNKFTGSLPPNYFVNWKASSRTMNQDGGLYM--VYEEK---LFDE-GGYGYTDAL 684

Query:   732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCL 791
              +  KG  M   K      +I  S NR +G IP SI  LK             GHIP  +
Sbjct:   685 DLQYKGLHMEQAKALTSYAAIDFSGNRLEGQIPESIGLLKALIAVNISNNAFTGHIPLSM 744

Query:   792 GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFES 851
              NL NLESLD+S N   G IP  L  ++FL + NVS N LTG IPQG Q      SSFE 
Sbjct:   745 ANLENLESLDMSRNQLSGTIPNGLGSISFLAYINVSHNQLTGEIPQGTQITGQSKSSFEG 804

Query:   852 NSGLCGRPLSRECESDEAP 870
             N+GLCG PL   C    AP
Sbjct:   805 NAGLCGLPLKESCFGTGAP 823

GO:0005576 "extracellular region" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009617 "response to bacterium" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0035304 "regulation of protein dephosphorylation" evidence=RCA

TAIR|locus:2046585 RLP27 "receptor like protein 27" [Arabidopsis thaliana (taxid:3702)]

 Score = 942 (336.7 bits), Expect = 1.1e-94, P = 1.1e-94
 Identities = 234/616 (37%), Positives = 318/616 (51%)

Query:   271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
             P S  NL  L  LDLS N L+G  P  +QNL  L  L LS+N  SG  P S++   F  L
Sbjct:   139 PSSFSNLSQLNILDLSHNELTGSFPF-VQNLTKLSILVLSYNHFSGTIPSSLLTLPF--L 195

Query:   331 QSLDFTSNKFSGELHASIGNLRS-LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYR 389
              SLD   N  +G + A   +  S LE + +G  +F G+I   +  L  L  LDLS    +
Sbjct:   196 SSLDLRENYLTGSIEAPNSSTSSRLEFMYLGNNHFEGQILEPISKLINLKHLDLS--FLK 253

Query:   390 GTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQ-KFTVVGLRSCNLIEFPNFLKN 448
              +  +D  L S                 T +TS++        + L SC LIEFP  LKN
Sbjct:   254 TSYPIDLNLFSSFKSLVRLVLSGNSLLATSITSDSKIPLNLENLVLLSCGLIEFPTILKN 313

Query:   449 QHHLMLLDLSSNRIHGKIPSWLLD-PSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLT 507
                L  +DLS+N+I GK+P W  + P  +             G ++ LV        +  
Sbjct:   314 LTKLEHIDLSNNKIKGKVPEWFWNLPRLRRVNLFNNLFTDLEGSEEVLV-----NSSVRL 368

Query:   508 LDLSSNNLQGPLPVPPSRTVNYLVS-NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR 566
             LDL+ N+ +GP P PP  ++N L + NNSF G IP   C   SL IL LS+NNL+G +PR
Sbjct:   369 LDLAYNHFRGPFPKPPL-SINLLSAWNNSFTGNIPLETCNRSSLAILDLSYNNLTGPIPR 427

Query:   567 CLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626
             CL  F + L +++LR NN  G++P+ F   + L  +D+ +N   G++PRSL+NCS L F+
Sbjct:   428 CLSDFQESLIVVNLRKNNLEGSLPDIFSDGALLRTLDVGYNQLTGKLPRSLLNCSMLRFV 487

Query:   627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP-RIDCGFSKLRIIDLSNNRFTG 685
              +  N+I+D FP WL  LP+L  L L+SNKF+G I  P R    F KLRI+++S+N FTG
Sbjct:   488 SVDHNKIKDTFPFWLKALPDLQALTLRSNKFHGPISPPDRGPLAFPKLRILEISDNNFTG 547

Query:   686 KLPSKSFLCWNAMKIVNTSDLK-YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDK 744
              LP   F+ W A  +    D + Y+ D  +P  ++  D   T D    +  KG  M   K
Sbjct:   548 SLPPNYFVNWEASSLQMNEDGRIYMGDYNNPY-YIYED---TVD----LQYKGLFMEQGK 599

Query:   745 VPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSN 804
             V     +I  S N+ +G IP SI  LK             GHIP  L N+T LESLDLS 
Sbjct:   600 VLTSYATIDFSGNKLEGQIPESIGLLKALIALNLSNNAFTGHIPLSLANVTELESLDLSR 659

Query:   805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREC 864
             N   G IP  L  L+FL + +V+ N L G IPQG Q      SSFE N+GLCG PL   C
Sbjct:   660 NQLSGTIPNGLKTLSFLAYISVAHNQLIGEIPQGTQITGQSKSSFEGNAGLCGLPLQGSC 719

Query:   865 ESDEAPTNEDHSKGAE 880
              +   P  ++  +  E
Sbjct:   720 FAPPTPQPKEEDEDEE 735

GO:0005886 "plasma membrane" evidence=ISM

GO:0006952 "defense response" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2829370 RLP40 "receptor like protein 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 929 (332.1 bits), Expect = 2.7e-93, P = 2.7e-93
 Identities = 263/778 (33%), Positives = 366/778 (47%)

Query:   111 SCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPS 170
             +CL G++  +SSLF+  HL  L L  N+F SS I S+   L+ L  L+LS S F  Q+P 
Sbjct:   113 ACLSGTLKPNSSLFQFHHLRSLLLPHNNFTSSSISSKFGMLNNLEVLSLSSSGFLAQVPF 172

Query:   171 EIXXXXXXXXXXXXXXXGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN--LAN 228
                                G  L   +FA  + KL     LD+ Y      +  N  L  
Sbjct:   173 SFSNLSMLSALVLSNNDLTG-SL---SFARNLRKL---RVLDVSYNHFSGILNPNSSLFE 225

Query:   229 LSSLTFLSL-HSCGLQGRIQXXXXXXXXXXXXXXXXXXXXXXXPVSIGNLHSLKKLDLSI 287
             L  + +L+L ++      +                        P +I NL  L +L L +
Sbjct:   226 LHHIIYLNLRYNNFTSSSLPYEFGNLNKLEVLDVSSNSFFGQVPPTISNLTQLTELYLPL 285

Query:   288 NNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHAS 347
             N+ +G LP  +QNL  L  L L  N  SG  P S+    F  L  L    N  +G +   
Sbjct:   286 NHFTGSLPL-VQNLTKLSILHLFGNHFSGTIPSSLFTMPF--LSYLSLKGNNLNGSIEVP 342

Query:   348 IGNLRS-LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNXXX 406
               +  S LE L +G  +F G+I   +  L  L  LDLS  +    ++L  L  SLK+   
Sbjct:   343 NSSSSSRLESLHLGENHFEGKILEPISKLINLKELDLSFLNTSYPIDLS-LFSSLKSLLL 401

Query:   407 XXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKI 466
                        +    +       V+ L  C++ +FPN  K  H+L  + LS+NRI GK 
Sbjct:   402 LDLSGDWISKASLTLDSYIPSTLEVLRLEHCDISDFPNVFKTLHNLEYIALSNNRISGKF 461

Query:   467 PSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRT 526
             P WL   S              TGF+    VL      +L+LD  +N+L+G LP  P  +
Sbjct:   462 PEWLW--SLPRLSSVFITDNLLTGFEGSSEVLVNSSVQILSLD--TNSLEGALPHLPL-S 516

Query:   527 VNYLVS-NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
             +NY  + +N F G+IP  +C   SL++L LS+NN +G +P CL +    L  L LR NN 
Sbjct:   517 INYFSAIDNRFGGDIPLSICNRSSLDVLDLSYNNFTGPIPPCLSN----LLYLKLRKNNL 572

Query:   586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP 645
              G+IP+ + +++ L  +D+ +N   G++PRSLINCS L+FL +  N I+D FP  L  LP
Sbjct:   573 EGSIPDKYYEDTPLRSLDVGYNRLTGKLPRSLINCSALQFLSVDHNGIKDTFPFSLKALP 632

Query:   646 NLTVLILQSNKFYGIIREPRID-CGFSKLRIIDLSNNRFTGK-LPSKSFLCWNAMKIVNT 703
              L VL+L SNKFYG +  P     GF +LRI++++ N+ TG  L S  F+ W A      
Sbjct:   633 KLQVLLLSSNKFYGPLSPPNEGPLGFPELRILEIAGNKLTGSFLSSDFFVNWKASSHTMN 692

Query:   704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMI 763
              DL     ++  K  +  +   TY  ++ +  KG  M    V     +I  S NR +G I
Sbjct:   693 EDLGLY--MVYGKV-IFGNYHLTYYETIDLRYKGLSMEQRNVLTSSATIDFSGNRLEGEI 749

Query:   764 PTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEF 823
             P SI  LK             GHIP    NL  +ESLDLS+N   G IP  L  L+FL +
Sbjct:   750 PESIGLLKALIALNLSNNAFTGHIPLSFANLKKMESLDLSSNQLSGTIPNGLRTLSFLAY 809

Query:   824 FNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEE 881
              NVS N L G IPQG Q      SSFE N+GLCG PL   C     P  + H K  EE
Sbjct:   810 VNVSHNQLIGEIPQGTQITGQPKSSFEGNAGLCGFPLQESCFGTNTPPAQ-HPKEQEE 866

GO:0009507 "chloroplast" evidence=ISM

GO:0007165 "signal transduction" evidence=IC

TAIR|locus:2046515 RLP24 "receptor like protein 24" [Arabidopsis thaliana (taxid:3702)]

 Score = 913 (326.5 bits), Expect = 1.3e-91, P = 1.3e-91
 Identities = 249/745 (33%), Positives = 350/745 (46%)

Query:   146 SEIINLSRLSYLNLSHSSFFG-QIPSEIXXXXXXXXXXXXXXXGYGLELQKPNFAN---L 201
             S +    +L YL L+ ++F    +PSE                G+ ++L   +      L
Sbjct:    95 SSLFGFHQLRYLALNRNNFTSASLPSEFCNLNKLKLLSLFSN-GF-IDLSHNDLMGSFPL 152

Query:   202 VEKLSNLETLDLGYVSIRSTI-PHN-LANLSSLTFLSLHSCGLQGRIQXXXXXXXXXXXX 259
             V  L  L  LDL       T+ P+N L  L SL +L+L    +   +             
Sbjct:   153 VRNLGKLAVLDLSDNHFSGTLNPNNSLFELHSLRYLNLAFNNISSSLPSKFGNLNKLEVL 212

Query:   260 XXXXXXXXXXXPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFP 319
                          +I NL  + +L L  N L+G  P  +QNL  L  L LS N  SG  P
Sbjct:   213 SLSFNGFSGQCFPTISNLTRITQLYLHNNELTGSFPL-VQNLTKLSFLGLSDNLFSGTIP 271

Query:   320 WSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS-LEVLAIGRCNFSGRIPSSLRNLTQL 378
              S +   F  L +LD   N  SG +     +  S LE++ +G  +  G+I   +  L  L
Sbjct:   272 -SYLF-TFPSLSTLDLRENDLSGSIEVPNSSTSSKLEIMYLGFNHLEGKILEPISKLINL 329

Query:   379 ITLDLSQNSYRGTMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCN 438
               LDLS  +    ++L+ LL  LK+              +  +S+        + L  C 
Sbjct:   330 KRLDLSFLNTSYPIDLN-LLSPLKSLSYLDFSGNSLSPASLSSSSYIPLSMESIVLSLCG 388

Query:   439 LIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVL 498
             + EFPN LK+  +L+ +D++SN+I GKIP WL   +               GF     V 
Sbjct:   389 IREFPNILKHLQNLIHIDITSNQIKGKIPEWLW--TLPQLSFVDISNNSFNGFQGSAEVF 446

Query:   499 PGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHN 558
                   +L LD  +NN +G LP  P   + +   +NSF GEIP  +C   SL ++ LS+N
Sbjct:   447 VNLSVRILMLD--ANNFEGALPTLPLSIIGFSAIHNSFTGEIPLSICNRTSLTMVDLSYN 504

Query:   559 NLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI 618
             N +G +P+CL +F      ++LR N+  G+IP+TF  +S L  +D+ +N   G++PRSL+
Sbjct:   505 NFTGPIPQCLSNFM----FVNLRKNDLEGSIPDTFYTDSSLKSLDVGYNRLTGKLPRSLL 560

Query:   619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID-CGFSKLRIID 677
             NCS L FL + +N+++D FP WL  LPNL VL L+SNKFYG I  P     GF +LRI +
Sbjct:   561 NCSSLRFLSVDNNRVKDTFPFWLKALPNLRVLTLRSNKFYGPISPPHQGPLGFPELRIFE 620

Query:   678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKG 737
             +++N FTG LP   F+ W A  +    D   L  V    +   S    TY  ++ +  KG
Sbjct:   621 IADNMFTGSLPPSFFVNWKASALTKNED-GGLYMVYEYDKAANSPVRYTYTDTIDLQYKG 679

Query:   738 QIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXXXXXXXXXXXGHIPSCLGNLTNL 797
               M  ++V     +I  S NR  G IP SI  LK             GHIP    NL NL
Sbjct:   680 LHMEQERVLTSYAAIDFSGNRLQGQIPESIGLLKALIALNLSNNAFTGHIPLSFANLMNL 739

Query:   798 ESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCG 857
             ESLD+S N   G IP  L  L+FL + +V+ N L G IPQG Q      SSFE N+GLCG
Sbjct:   740 ESLDMSGNQLSGTIPNGLGSLSFLVYISVAHNKLKGEIPQGTQITGQIKSSFEGNAGLCG 799

Query:   858 RPLSRECESDEAPT----NEDHSKG 878
              PL   C     P      ED  KG
Sbjct:   800 LPLQETCFDSSVPPIQPKQEDEEKG 824

GO:0005886 "plasma membrane" evidence=ISM

GO:0016301 "kinase activity" evidence=ISS

GO:0007165 "signal transduction" evidence=IC

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	887
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	1e-80
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	7e-58
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-20
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-13
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-11
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-07
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-07
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-07
PLN03210	1153	PLN03210, PLN03210, Resistant to P	6e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-05
PRK15370	754	PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl	2e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	3e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	9e-05
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	9e-05
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	9e-04
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	0.002
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	0.002
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	0.003

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  280 bits (717), Expect = 1e-80
 Identities = 235/712 (33%), Positives = 339/712 (47%), Gaps = 116/712 (16%)

Query: 2   GSSQCLFSIFMQLFVPLIFFNFTTATFSTASSVLRLCHDDECSALLQFKESLIINDTIEE 61
           G   C + IFM  F   +F NF             + H +E   LL FK S  IND ++ 
Sbjct: 5   GPQHCPYLIFMLFF---LFLNF------------SMLHAEELELLLSFKSS--INDPLK- 46

Query: 62  SYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSS 121
             +   W+S              + D C W G+ C+ N+  V+ +DLS   + G I  SS
Sbjct: 47  --YLSNWNS--------------SADVCLWQGITCN-NSSRVVSIDLSGKNISGKI--SS 87

Query: 122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLS-RLSYLNLSHSSFFGQIPSEILELVNLVS 180
           ++F+L +++ +NL+ N   S  IP +I   S  L YLNLS+++F G IP           
Sbjct: 88  AIFRLPYIQTINLSNNQL-SGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRG--------- 137

Query: 181 LDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC 240
                                   + NLETLDL    +   IP+++ + SSL  L L   
Sbjct: 138 -----------------------SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGN 174

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQN 300
            L G+I +SL NL+ L  L L+ N+L+G++P  +G + SLK + L  NNLSGE+P  I  
Sbjct: 175 VLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGG 234

Query: 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
           L SL  LDL +N L+G  P                          +S+GNL++L+ L + 
Sbjct: 235 LTSLNHLDLVYNNLTGPIP--------------------------SSLGNLKNLQYLFLY 268

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420
           +   SG IP S+ +L +LI+LDLS NS  G  E+  L++ L+NLE+L L SN  +   K+
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSG--EIPELVIQLQNLEILHLFSN--NFTGKI 324

Query: 421 TSNTTS-QKFTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNL 478
               TS  +  V+ L S     E P  L   ++L +LDLS+N + G+IP  L    + NL
Sbjct: 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCS--SGNL 382

Query: 479 SALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSR--TVNYL-VSNNS 535
             L L  N L G   ++    G  R L  + L  N+  G LP   ++   V +L +SNN+
Sbjct: 383 FKLILFSNSLEG---EIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNN 439

Query: 536 FIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595
             G I S    + SL++L L+ N   G LP   G  S +L  LDL  N F G +P     
Sbjct: 440 LQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG--SKRLENLDLSRNQFSGAVPRKLGS 497

Query: 596 ESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
            S L  + LS N   G IP  L +C KL  LD+  NQ+    P+    +P L+ L L  N
Sbjct: 498 LSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQN 557

Query: 656 KFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK-SFLCWNAMKIVNTSDL 706
           +  G I  P+       L  +++S+N   G LPS  +FL  NA  +    DL
Sbjct: 558 QLSGEI--PKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINASAVAGNIDL 607

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  214 bits (546), Expect = 7e-58
 Identities = 188/611 (30%), Positives = 278/611 (45%), Gaps = 73/611 (11%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLV-SLEELDLS 310
           N S+++ +DLS   + G++  +I  L  ++ ++LS N LSG +P  I     SL  L+LS
Sbjct: 67  NSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLS 126

Query: 311 FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS 370
            N  +G  P     G+   L++LD ++N  SGE+   IG+  SL+VL +G     G+IP+
Sbjct: 127 NNNFTGSIPR----GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPN 182

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFT 430
           SL NLT L  L L+ N   G +  +  L  +K+L+ + L  N LS               
Sbjct: 183 SLTNLTSLEFLTLASNQLVGQIPRE--LGQMKSLKWIYLGYNNLSG-------------- 226

Query: 431 VVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490
                     E P  +     L  LDL  N + G IPS L +    NL  L L  N L+G
Sbjct: 227 ----------EIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLK--NLQYLFLYQNKLSG 274

Query: 491 FDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN----YLVSNNSFIGEIPSWLCK 546
               +       + L++LDLS N+L G +P    +  N    +L SNN F G+IP  L  
Sbjct: 275 ---PIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNN-FTGKIPVALTS 330

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
           L  L++L L  N  SG +P+ LG   + L++LDL  NN  G IP        L  + L  
Sbjct: 331 LPRLQVLQLWSNKFSGEIPKNLGK-HNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           N  +G IP+SL  C  L  + + DN      PS    LP +  L + +N   G I   + 
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726
           D     L+++ L+ N+F G LP              +  L+ L          LS    +
Sbjct: 450 D--MPSLQMLSLARNKFFGGLPDSF----------GSKRLENLD---------LSRNQFS 488

Query: 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH 786
                K+ +  ++M             LS N+  G IP  +++ K L  L+L +N L G 
Sbjct: 489 GAVPRKLGSLSELMQLK----------LSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQ 538

Query: 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
           IP+    +  L  LDLS N   G+IP+ L  +  L   N+S N+L G +P    F   + 
Sbjct: 539 IPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAINA 598

Query: 847 SSFESNSGLCG 857
           S+   N  LCG
Sbjct: 599 SAVAGNIDLCG 609

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 95.3 bits (237), Expect = 4e-20
 Identities = 49/111 (44%), Positives = 69/111 (62%), Gaps = 8/111 (7%)

Query: 761 GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF 820
           G IP  I+ L+ LQ +NL  N+++G+IP  LG++T+LE LDLS N+F G IP+ L +LT 
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 821 LEFFNVSDNYLTGPIPQ---GRQF--ATFDNSSFESNSGLCGRPLSRECES 866
           L   N++ N L+G +P    GR    A+F+   F  N+GLCG P  R C  
Sbjct: 492 LRILNLNGNSLSGRVPAALGGRLLHRASFN---FTDNAGLCGIPGLRACGP 539

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 75.6 bits (186), Expect = 5e-14
 Identities = 40/104 (38%), Positives = 61/104 (58%), Gaps = 1/104 (0%)

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
           L L + GL+G I + +  L  L  ++LS N + G +P S+G++ SL+ LDLS N+ +G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 295 PTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           P S+  L SL  L+L+ N LSG  P + + G      S +FT N
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDN 525

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 72.2 bits (177), Expect = 6e-13
 Identities = 34/91 (37%), Positives = 52/91 (57%), Gaps = 2/91 (2%)

Query: 259 LDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF 318
           L L    L G +P  I  L  L+ ++LS N++ G +P S+ ++ SLE LDLS+N  +G  
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 319 PWSIVIGNFTQLQSLDFTSNKFSGELHASIG 349
           P S+  G  T L+ L+   N  SG + A++G
Sbjct: 483 PESL--GQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 33/88 (37%), Positives = 54/88 (61%)

Query: 211 LDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL 270
           L L    +R  IP++++ L  L  ++L    ++G I  SLG+++ L  LDLS N   G +
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 271 PVSIGNLHSLKKLDLSINNLSGELPTSI 298
           P S+G L SL+ L+L+ N+LSG +P ++
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 66.8 bits (163), Expect = 3e-11
 Identities = 33/90 (36%), Positives = 51/90 (56%), Gaps = 2/90 (2%)

Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342
           L L    L G +P  I  L  L+ ++LS N + G  P S+  G+ T L+ LD + N F+G
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSL--GSITSLEVLDLSYNSFNG 480

Query: 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSL 372
            +  S+G L SL +L +   + SGR+P++L
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 57.3 bits (138), Expect = 1e-08
 Identities = 85/277 (30%), Positives = 123/277 (44%), Gaps = 15/277 (5%)

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
           +    +P +L+ L SL  LS            +L NL  L  LDL+LN L   +   +  
Sbjct: 57  NTLLLLPSSLSRLLSLDLLSPSGISSLD-GSENLLNLLPLPSLDLNLNRLRSNIS-ELLE 114

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVS-LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDF 335
           L +L  LDL  NN++ ++P  I  L S L+ELDLS NK+         + N   L++LD 
Sbjct: 115 LTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIESLPSP---LRNLPNLKNLDL 170

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
           + N  S +L   + NL +L  L +     S  +P  +  L+ L  LDLS NS     EL 
Sbjct: 171 SFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII---ELL 225

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLL 455
             L +LKNL  L LS+N L  L +   N ++ +   +   S N I   + L +  +L  L
Sbjct: 226 SSLSNLKNLSGLELSNNKLEDLPESIGNLSNLETLDL---SNNQISSISSLGSLTNLREL 282

Query: 456 DLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
           DLS N +   +P   L      L    L         
Sbjct: 283 DLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELK 319

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 55.2 bits (133), Expect = 1e-07
 Identities = 35/101 (34%), Positives = 54/101 (53%), Gaps = 7/101 (6%)

Query: 91  WDGVECS--ENTGH--VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS 146
           W G +C      G   +  L L N  L G I +  S  KL HL+ +NL+ N  +   IP 
Sbjct: 404 WSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDIS--KLRHLQSINLSGNSIRG-NIPP 460

Query: 147 EIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
            + +++ L  L+LS++SF G IP  + +L +L  L+L+ NS
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS 501

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 54.6 bits (131), Expect = 1e-07
 Identities = 83/274 (30%), Positives = 127/274 (46%), Gaps = 20/274 (7%)

Query: 137 NDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKP 196
           N  +     SE++ L+ L+ L+L +++     P   L   NL  LDLS N       +  
Sbjct: 101 NLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDN-------KIE 153

Query: 197 NFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL 256
           +  + +  L NL+ LDL +  + S +P  L+NLS+L  L L    +   +   +  LS L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDL-SDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSAL 211

Query: 257 LHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
             LDLS N ++ EL  S+ NL +L  L+LS NN   +LP SI NL +LE LDLS N++S 
Sbjct: 212 EELDLSNNSII-ELLSSLSNLKNLSGLELS-NNKLEDLPESIGNLSNLETLDLSNNQISS 269

Query: 317 EFPWSIVIGNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNL 375
                  +G+ T L+ LD + N  S  L       L    +L +     +  +  +   L
Sbjct: 270 ----ISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTLKALELKLNSILL 325

Query: 376 TQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSL 409
                 ++  N    + E   +L SL NL  L  
Sbjct: 326 ----NNNILSNGETSSPEALSILESLNNLWTLDN 355

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 54.4 bits (131), Expect = 2e-07
 Identities = 38/102 (37%), Positives = 58/102 (56%), Gaps = 8/102 (7%)

Query: 157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV 216
           L L +    G IP++I +L +L S++LS NS  G      N    +  +++LE LDL Y 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------NIPPSLGSITSLEVLDLSYN 476

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLH 258
           S   +IP +L  L+SL  L+L+   L GR+ ++LG   +LLH
Sbjct: 477 SFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG--GRLLH 516

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.7 bits (129), Expect = 3e-07
 Identities = 32/84 (38%), Positives = 44/84 (52%), Gaps = 2/84 (2%)

Query: 307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSG 366
           L L    L G  P  I       LQS++ + N   G +  S+G++ SLEVL +   +F+G
Sbjct: 423 LGLDNQGLRGFIPNDI--SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNG 480

Query: 367 RIPSSLRNLTQLITLDLSQNSYRG 390
            IP SL  LT L  L+L+ NS  G
Sbjct: 481 SIPESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 47.9 bits (115), Expect = 3e-07
 Identities = 24/59 (40%), Positives = 31/59 (52%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
           L S+ LS+NR   +   +   L  L+VL+L  NNL    P     L +L SLDLS NN 
Sbjct: 2   LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 53.3 bits (128), Expect = 5e-07
 Identities = 35/95 (36%), Positives = 53/95 (55%), Gaps = 8/95 (8%)

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSR-----TVNYLVSNNSFIGEIPSWLCKLDSLEILVL 555
           GK F+  L L +  L+G +P   S+     ++N  +S NS  G IP  L  + SLE+L L
Sbjct: 416 GKWFIDGLGLDNQGLRGFIPNDISKLRHLQSIN--LSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 556 SHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP 590
           S+N+ +G +P  LG  +  L IL+L  N+  G +P
Sbjct: 474 SYNSFNGSIPESLGQLT-SLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 53.0 bits (127), Expect = 6e-07
 Identities = 91/320 (28%), Positives = 126/320 (39%), Gaps = 71/320 (22%)

Query: 91  WDGVECSENTGHVMKLDLSNSCLYGSINSSS--SLFKLVHLEWLNLAFNDFKS-SEIPSE 147
           WDGV     TG      L N  L GS N      L    +LE L L  +D  S  E+PS 
Sbjct: 627 WDGVH--SLTG------LRNIDLRGSKNLKEIPDLSMATNLETLKL--SDCSSLVELPSS 676

Query: 148 IINLSRLSYLNLSHSSFFGQIPSEILELVNLVSL-DLSLNSGYGLELQKPNFANLVEKLS 206
           I  L++L  L++S       +P+ I    NL SL  L+L+    L+    +F ++    +
Sbjct: 677 IQYLNKLEDLDMSRCENLEILPTGI----NLKSLYRLNLSGCSRLK----SFPDIS---T 725

Query: 207 NLETLDLGYVSIRSTIPHNL--ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
           N+  LDL   +I    P NL   NL  L    + S  L  R+Q               L 
Sbjct: 726 NISWLDLDETAI-EEFPSNLRLENLDELILCEMKSEKLWERVQP--------------LT 770

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
            L+  L        SL +L LS      ELP+SIQNL  LE L++         P  I  
Sbjct: 771 PLMTMLS------PSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-- 822

Query: 325 GNFTQLQSLDF------------TSNKFS--------GELHASIGNLRSLEVLAIGRCNF 364
            N   L+SLD             ++N            E+   I    +L  L +  CN 
Sbjct: 823 -NLESLESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNN 881

Query: 365 SGRIPSSLRNLTQLITLDLS 384
             R+  ++  L  L T+D S
Sbjct: 882 LQRVSLNISKLKHLETVDFS 901

syringae 6; Provisional. Length = 1153

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 3e-06
 Identities = 26/65 (40%), Positives = 39/65 (60%), Gaps = 1/65 (1%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN-LTNLESLDLSNNNF 807
           L  + LS N F+G IP S+  L  L++LNL+ N+L G +P+ LG  L +  S + ++N  
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAG 527

Query: 808 LGQIP 812
           L  IP
Sbjct: 528 LCGIP 532

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.2 bits (120), Expect = 4e-06
 Identities = 31/107 (28%), Positives = 50/107 (46%), Gaps = 7/107 (6%)

Query: 545 CKLDS------LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR 598
           C+ DS      ++ L L +  L G +P  +      L  ++L  N+  G IP +    + 
Sbjct: 409 CQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLR-HLQSINLSGNSIRGNIPPSLGSITS 467

Query: 599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP 645
           L ++DLS+N F G IP SL   + L  L++  N +    P+ LG   
Sbjct: 468 LEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 49.0 bits (117), Expect = 1e-05
 Identities = 31/82 (37%), Positives = 38/82 (46%)

Query: 578 LDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF 637
           L L      G IPN   K   L  I+LS N  +G IP SL + + LE LD+  N      
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 638 PSWLGTLPNLTVLILQSNKFYG 659
           P  LG L +L +L L  N   G
Sbjct: 483 PESLGQLTSLRILNLNGNSLSG 504

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.9 bits (114), Expect = 2e-05
 Identities = 37/99 (37%), Positives = 51/99 (51%), Gaps = 14/99 (14%)

Query: 478 LSALNLSHNLLTGFDQQLVVLPG---GKRFLLTLDLSSNNLQGPLPVP----PSRTVNYL 530
           +  L L +  L GF      +P      R L +++LS N+++G +P       S  V  L
Sbjct: 420 IDGLGLDNQGLRGF------IPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDL 473

Query: 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLG 569
            S NSF G IP  L +L SL IL L+ N+LSG +P  LG
Sbjct: 474 -SYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional

 Score = 47.8 bits (113), Expect = 2e-05
 Identities = 57/226 (25%), Positives = 93/226 (41%), Gaps = 29/226 (12%)

Query: 435 RSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ 494
            S  L   P  L +    M  +LS NRI  ++P  L  PS   L +L+L HN ++   + 
Sbjct: 228 NSNQLTSIPATLPDTIQEM--ELSINRIT-ELPERL--PSA--LQSLDLFHNKISCLPEN 280

Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILV 554
           L   P     L  L +  N+++      PS   +  V +NS    +P  L     L+ L 
Sbjct: 281 L---PEE---LRYLSVYDNSIRTLPAHLPSGITHLNVQSNSLTA-LPETLPP--GLKTLE 331

Query: 555 LSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIP 614
              N L+ L      S   +L +LD+   N    +P T      +  +D+S N     +P
Sbjct: 332 AGENALTSL----PASLPPELQVLDVS-KNQITVLPETL--PPTITTLDVSRNALTN-LP 383

Query: 615 RSLINCSKLEFLDIGDNQIRDI---FPSWLGTLPNLTVLILQSNKF 657
            +L   + L+ +    N +  +    P + G  P  T +I++ N F
Sbjct: 384 ENLP--AALQIMQASRNNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427

Length = 754

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 47.5 bits (113), Expect = 3e-05
 Identities = 27/88 (30%), Positives = 46/88 (52%), Gaps = 2/88 (2%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           + L +   +G IP  +     L+ +++  N IR   P  LG++ +L VL L  N F G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPS 689
             P      + LRI++L+ N  +G++P+
Sbjct: 483 --PESLGQLTSLRILNLNGNSLSGRVPA 508

Length = 623

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 67/293 (22%), Positives = 102/293 (34%), Gaps = 51/293 (17%)

Query: 201 LVEKLSNLETLDLGYVSIR----STIPHNLANLSSLTFLSLHSCGLQ------GRIQSSL 250
           L+ KL  L+ L L   ++       +   L    SL  L L              +   L
Sbjct: 18  LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGL 77

Query: 251 GNLSKLLHLDLSLNELLGELPVSIGNLH---SLKKLDLSINNLSGE-LPTSIQNLVS--- 303
                L  LDLS N L  +    + +L    SL++L L+ N L    L    + L     
Sbjct: 78  TKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPP 137

Query: 304 -LEELDLSFNKLSGE--FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
            LE+L L  N+L G      +  +     L+ L+  +N               +  LA G
Sbjct: 138 ALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIGDAG---------IRALAEG 188

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYR--GTMELDFLLVSLKNLEVLSLSSNWLSLLT 418
                      L+    L  LDL+ N     G   L   L SLK+LEVL+L  N L+   
Sbjct: 189 -----------LKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAG 237

Query: 419 KVT----SNTTSQKFTVVGLRSCNL-----IEFPNFLKNQHHLMLLDLSSNRI 462
                    + +     + L   ++      +    L  +  L+ LDL  N+ 
Sbjct: 238 AAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKF 290

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 46.6 bits (111), Expect = 3e-05
 Identities = 35/137 (25%), Positives = 55/137 (40%), Gaps = 19/137 (13%)

Query: 199 ANLVEKLSNLETLDLGYVSIRS----TIPHNLANLSSLTFLSLHSCGL--QGRIQSS--L 250
           A  +    +L+ L+L    I       +   L    +L  L L++ GL  +G    +  L
Sbjct: 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETL 217

Query: 251 GNLSKLLHLDLSLNELLGELPVS------IGNLHSLKKLDLSINNLSGE----LPTSIQN 300
            +L  L  L+L  N  L +   +      +    SL  L LS N+++ +    L   +  
Sbjct: 218 ASLKSLEVLNLGDN-NLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAE 276

Query: 301 LVSLEELDLSFNKLSGE 317
             SL ELDL  NK   E
Sbjct: 277 KESLLELDLRGNKFGEE 293

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 41.0 bits (97), Expect = 7e-05
 Identities = 26/57 (45%), Positives = 30/57 (52%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314
            LDLS N L      +   L +LK LDLS NNL+   P +   L SL  LDLS N L
Sbjct: 4   SLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 9e-05
 Identities = 22/62 (35%), Positives = 28/62 (45%), Gaps = 2/62 (3%)

Query: 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
            L+ LD+ +N++  I       LPNL VL L  N    I   P    G   LR +DLS N
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSI--SPEAFSGLPSLRSLDLSGN 58

Query: 682 RF 683
             
Sbjct: 59  NL 60

Length = 60

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 45.0 bits (107), Expect = 9e-05
 Identities = 66/263 (25%), Positives = 105/263 (39%), Gaps = 46/263 (17%)

Query: 277 LHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFP--WSIVIGNFT-- 328
           L  L+ L L  N L  E    L ++++   SL+EL LS N+  G  P     ++   T  
Sbjct: 22  LLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNET-GRIPRGLQSLLQGLTKG 80

Query: 329 -QLQSLDFTSNKFSGELHASIGNLR---SLEVLAIGRCNFSGR----IPSSLRNLT-QLI 379
             LQ LD + N    +    + +L    SL+ L +       R    +   L++L   L 
Sbjct: 81  CGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALE 140

Query: 380 TLDLSQN--SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437
            L L +N         L   L + ++L+ L+L++N +                  G+R+ 
Sbjct: 141 KLVLGRNRLEGASCEALAKALRANRDLKELNLANNGI---------------GDAGIRAL 185

Query: 438 NLIEFPNFLKNQHHLMLLDLSSN---RIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ 494
                   LK   +L +LDL++N          +  L  S ++L  LNL  N LT     
Sbjct: 186 AEG-----LKANCNLEVLDLNNNGLTDEGASALAETL-ASLKSLEVLNLGDNNLTDAGAA 239

Query: 495 LVV--LPGGKRFLLTLDLSSNNL 515
            +   L      LLTL LS N++
Sbjct: 240 ALASALLSPNISLLTLSLSCNDI 262

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 45.0 bits (106), Expect = 1e-04
 Identities = 60/188 (31%), Positives = 87/188 (46%), Gaps = 11/188 (5%)

Query: 504 FLLTLDLSSNNLQG--PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
            L +LDL +NN+    PL       +  L  +++ I  +PS L  L +L+ L LS N+LS
Sbjct: 117 NLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176

Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS 621
            L    L S    L+ LDL  N     +P      S L  +DLS+N     +  SL N  
Sbjct: 177 DLPK--LLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLK 232

Query: 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
            L  L++ +N++ D  P  +G L NL  L L +N+    I         + LR +DLS N
Sbjct: 233 NLSGLELSNNKLED-LPESIGNLSNLETLDLSNNQ----ISSISSLGSLTNLRELDLSGN 287

Query: 682 RFTGKLPS 689
             +  LP 
Sbjct: 288 SLSNALPL 295

Length = 394

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.8 bits (94), Expect = 2e-04
 Identities = 21/60 (35%), Positives = 27/60 (45%)

Query: 772 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYL 831
            L+ L+L NN L          L NL+ LDLS NN     P+    L  L   ++S N L
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 23/60 (38%), Positives = 28/60 (46%)

Query: 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNL 290
           +L  L L +  L      +   L  L  LDLS N L    P +   L SL+ LDLS NNL
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.4 bits (93), Expect = 3e-04
 Identities = 17/60 (28%), Positives = 24/60 (40%)

Query: 598 RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
            L  +DLS+N        +      L+ LD+  N +  I P     LP+L  L L  N  
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 42.5 bits (100), Expect = 9e-04
 Identities = 32/105 (30%), Positives = 49/105 (46%), Gaps = 8/105 (7%)

Query: 317 EFPWSIVIGNFTQLQS------LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS 370
           + PWS     F   +       L   +    G +   I  LR L+ + +   +  G IP 
Sbjct: 401 QHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPP 460

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS 415
           SL ++T L  LDLS NS+ G++     L  L +L +L+L+ N LS
Sbjct: 461 SLGSITSLEVLDLSYNSFNGSIPES--LGQLTSLRILNLNGNSLS 503

Length = 623

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 37.1 bits (87), Expect = 0.002
 Identities = 16/60 (26%), Positives = 21/60 (35%)

Query: 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI 633
            L  LDL  N         F     L ++DLS N      P +      L  LD+  N +
Sbjct: 1   NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60

Length = 60

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 36.5 bits (85), Expect = 0.002
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 19/60 (31%)

Query: 39 HDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKA-ASWKPEEGNIDCCSWDGVECS 97
           +D+  ALL FK SL                +G    A +SW P   + D CSW GV C 
Sbjct: 1  LNDDRDALLAFKSSL----------------NGDPSGALSSWNPS--SSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 40.3 bits (94), Expect = 0.003
 Identities = 79/310 (25%), Positives = 115/310 (37%), Gaps = 41/310 (13%)

Query: 286 SINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELH 345
             +N    LP+S+  L+SL+ L  S          S  + N   L SLD   N+    + 
Sbjct: 54  LSSNTLLLLPSSLSRLLSLDLLSPSGIS---SLDGSENLLNLLPLPSLDLNLNRLRSNI- 109

Query: 346 ASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT-QLITLDLSQNSYRGTMELDFLLVSLKNL 404
           + +  L +L  L +   N +  IP  +  L   L  LDLS N       L   L +L NL
Sbjct: 110 SELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE---SLPSPLRNLPNL 165

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
           + L LS N   L       +       + L    + + P  ++    L  LDLS+N I  
Sbjct: 166 KNLDLSFN--DLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSI-- 221

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPS 524
            I       + +NLS L LS+N L    + +  L      L TLDLS+N +         
Sbjct: 222 -IELLSSLSNLKNLSGLELSNNKLEDLPESIGNLSN----LETLDLSNNQI--------- 267

Query: 525 RTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN 584
                            S L  L +L  L LS N+LS  LP           +L+L    
Sbjct: 268 --------------SSISSLGSLTNLRELDLSGNSLSNALPLIALLLLLLELLLNLLLTL 313

Query: 585 FFGTIPNTFM 594
               +    +
Sbjct: 314 KALELKLNSI 323

Length = 394

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	887
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.96
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.9
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.89
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.86
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.83
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.59
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.54
PLN03150	623	hypothetical protein; Provisional	99.4
PLN03150	623	hypothetical protein; Provisional	99.39
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.02
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.02
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.97
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.96
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	98.95
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.89
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.87
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.86
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.85
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.8
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.78
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.71
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.66
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.59
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.53
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.37
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.24
KOG4341	483	consensus F-box protein containing LRR [General fu	98.22
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.21
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.19
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.13
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.12
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.06
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.04
KOG4341	483	consensus F-box protein containing LRR [General fu	98.02
PRK15386	426	type III secretion protein GogB; Provisional	97.82
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.74
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.69
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.62
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.54
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.52
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.51
PRK15386	426	type III secretion protein GogB; Provisional	97.5
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.26
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.61
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.58
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.5
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.45
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.3
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	96.29
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.95
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.74
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.37
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.24
KOG4308	478	consensus LRR-containing protein [Function unknown	93.13
KOG4308	478	consensus LRR-containing protein [Function unknown	91.2
KOG3864	221	consensus Uncharacterized conserved protein [Funct	87.47
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	86.82
smart00370	26	LRR Leucine-rich repeats, outliers.	86.82
KOG0473	326	consensus Leucine-rich repeat protein [Function un	86.8
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	86.4
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.4
smart00370	26	LRR Leucine-rich repeats, outliers.	83.92
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.92
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	82.64

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=3.5e-70  Score=678.90  Aligned_cols=584  Identities=36%  Similarity=0.582  Sum_probs=423.0

Q ss_pred             CHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccccc
Q 040113           39 HDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSIN  118 (887)
Q Consensus        39 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~  118 (887)
                      .++|++||++||+++.++.+                .+.+|..   ..+||.|.||+|+.. ++|+.|+|+++.+.|.++
T Consensus        27 ~~~~~~~l~~~~~~~~~~~~----------------~~~~w~~---~~~~c~w~gv~c~~~-~~v~~L~L~~~~i~~~~~   86 (968)
T PLN00113         27 HAEELELLLSFKSSINDPLK----------------YLSNWNS---SADVCLWQGITCNNS-SRVVSIDLSGKNISGKIS   86 (968)
T ss_pred             CHHHHHHHHHHHHhCCCCcc----------------cCCCCCC---CCCCCcCcceecCCC-CcEEEEEecCCCccccCC
Confidence            35789999999999865433                5789975   578999999999864 699999999999988876


Q ss_pred             CCcccccCCCCCeEECCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCC
Q 040113          119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPN  197 (887)
Q Consensus       119 ~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~  197 (887)
                      .  .+..+++|++|+|++|++.+. +|..+. .+++|++|+|++|.+.+.+|.  +.+++|++|++++|.          
T Consensus        87 ~--~~~~l~~L~~L~Ls~n~~~~~-ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~----------  151 (968)
T PLN00113         87 S--AIFRLPYIQTINLSNNQLSGP-IPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNM----------  151 (968)
T ss_pred             h--HHhCCCCCCEEECCCCccCCc-CChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCc----------
Confidence            5  788889999999999888765 776654 888888888888888877774  345566666666554          


Q ss_pred             hHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCC
Q 040113          198 FANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNL  277 (887)
Q Consensus       198 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l  277 (887)
                                          +.+.+|..++.+++|++|++++|.+.+.+|..+.++++|++|++++|.+.+.+|..++++
T Consensus       152 --------------------~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l  211 (968)
T PLN00113        152 --------------------LSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQM  211 (968)
T ss_pred             --------------------ccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCc
Confidence                                444445555555555555555555555555555555566666666665555555566666


Q ss_pred             CCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEE
Q 040113          278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVL  357 (887)
Q Consensus       278 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L  357 (887)
                      ++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..  ++++++|+.|++++|.+.+.+|..+..+++|++|
T Consensus       212 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  289 (968)
T PLN00113        212 KSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS--LGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISL  289 (968)
T ss_pred             CCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh--HhCCCCCCEEECcCCeeeccCchhHhhccCcCEE
Confidence            66666666666666556666666666666666666666555555  5566666666666666666666666666666666


Q ss_pred             EccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC
Q 040113          358 AIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC  437 (887)
Q Consensus       358 ~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~  437 (887)
                      ++++|.+.+.+|..+..+++|++|++++|.+.+..+..                                          
T Consensus       290 ~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~------------------------------------------  327 (968)
T PLN00113        290 DLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVA------------------------------------------  327 (968)
T ss_pred             ECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChh------------------------------------------
Confidence            66666666666666667777777777777665443322                                          


Q ss_pred             CCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCccccc
Q 040113          438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG  517 (887)
Q Consensus       438 ~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~  517 (887)
                              +..+++|+.|++++|.+.+.+|..                                                
T Consensus       328 --------~~~l~~L~~L~L~~n~l~~~~p~~------------------------------------------------  351 (968)
T PLN00113        328 --------LTSLPRLQVLQLWSNKFSGEIPKN------------------------------------------------  351 (968)
T ss_pred             --------HhcCCCCCEEECcCCCCcCcCChH------------------------------------------------
Confidence                    223333444444444433333322                                                


Q ss_pred             CCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCC
Q 040113          518 PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES  597 (887)
Q Consensus       518 ~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~  597 (887)
                                                +..+++|+.|++++|.+++.+|..+.... +|+.|++++|++.+.+|..+..++
T Consensus       352 --------------------------l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~-~L~~L~l~~n~l~~~~p~~~~~~~  404 (968)
T PLN00113        352 --------------------------LGKHNNLTVLDLSTNNLTGEIPEGLCSSG-NLFKLILFSNSLEGEIPKSLGACR  404 (968)
T ss_pred             --------------------------HhCCCCCcEEECCCCeeEeeCChhHhCcC-CCCEEECcCCEecccCCHHHhCCC
Confidence                                      33344455555555555555555555544 466666666666666666666666


Q ss_pred             cccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEE
Q 040113          598 RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID  677 (887)
Q Consensus       598 ~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  677 (887)
                      +|+.|++++|++++..|..+.+++.|+.|++++|++++.+|..+..+++|+.|++++|++.+.+|...   ..++|+.|+
T Consensus       405 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~---~~~~L~~L~  481 (968)
T PLN00113        405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF---GSKRLENLD  481 (968)
T ss_pred             CCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc---ccccceEEE
Confidence            77777777777777777777777777777777777777777777777778888888887777766543   357889999


Q ss_pred             cCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecC
Q 040113          678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSN  757 (887)
Q Consensus       678 Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N  757 (887)
                      +++|++++.+|.. +..                                                   .+.|+.|+|++|
T Consensus       482 ls~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~Ls~N  509 (968)
T PLN00113        482 LSRNQFSGAVPRK-LGS---------------------------------------------------LSELMQLKLSEN  509 (968)
T ss_pred             CcCCccCCccChh-hhh---------------------------------------------------hhccCEEECcCC
Confidence            9999998888754 111                                                   356889999999


Q ss_pred             cCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113          758 RFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       758 ~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      ++++.+|..++++++|++|+|++|.+++.+|..|+++++|+.|||++|+++|.+|..+..+++|++|++++|+++|.+|.
T Consensus       510 ~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~  589 (968)
T PLN00113        510 KLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPS  589 (968)
T ss_pred             cceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCcCccccccccCCCcCCCCCC
Q 040113          838 GRQFATFDNSSFESNSGLCGRP  859 (887)
Q Consensus       838 ~~~~~~~~~~~~~~n~~lcg~~  859 (887)
                      .++|.++...+|.||+++||.+
T Consensus       590 ~~~~~~~~~~~~~~n~~lc~~~  611 (968)
T PLN00113        590 TGAFLAINASAVAGNIDLCGGD  611 (968)
T ss_pred             cchhcccChhhhcCCccccCCc
Confidence            9999999999999999999865

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=2.1e-55  Score=546.57  Aligned_cols=515  Identities=35%  Similarity=0.537  Sum_probs=379.0

Q ss_pred             CCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc-CCCCCCEEEcccCCCCCccccccCCCC
Q 040113          176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA-NLSSLTFLSLHSCGLQGRIQSSLGNLS  254 (887)
Q Consensus       176 ~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~~~~l~~l~  254 (887)
                      .+++.|++++|.+.      +.++..+..+++|++|++++|++.+.+|..+. .+++|++|++++|.+.+.+|.  +.++
T Consensus        69 ~~v~~L~L~~~~i~------~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~  140 (968)
T PLN00113         69 SRVVSIDLSGKNIS------GKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIP  140 (968)
T ss_pred             CcEEEEEecCCCcc------ccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccC
Confidence            35666777666532      22345556666666666666666655554433 556666666666666555443  3455


Q ss_pred             CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113          255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD  334 (887)
Q Consensus       255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  334 (887)
                      +|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..++++++|++|++++|.+.+.+|..  ++++++|+.|+
T Consensus       141 ~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~l~~L~~L~  218 (968)
T PLN00113        141 NLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE--LGQMKSLKWIY  218 (968)
T ss_pred             CCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH--HcCcCCccEEE
Confidence            5666666666655555555555666666666666555555555555555666666555555555544  55555555555


Q ss_pred             ccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcc
Q 040113          335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL  414 (887)
Q Consensus       335 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i  414 (887)
                      +++|.+.+.+|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..                      
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~----------------------  276 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI----------------------  276 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccC----------------------
Confidence            5555555555555555555555555555555555555555555555555555444332                      


Q ss_pred             cccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcccc
Q 040113          415 SLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ  494 (887)
Q Consensus       415 ~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~  494 (887)
                                                  |..+..+++|+.|++++|.+.+.+|.++..  +++|+.|++++|.+      
T Consensus       277 ----------------------------p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~--l~~L~~L~l~~n~~------  320 (968)
T PLN00113        277 ----------------------------PPSIFSLQKLISLDLSDNSLSGEIPELVIQ--LQNLEILHLFSNNF------  320 (968)
T ss_pred             ----------------------------chhHhhccCcCEEECcCCeeccCCChhHcC--CCCCcEEECCCCcc------
Confidence                                        344555666667777777776666666544  55555555444433      


Q ss_pred             ccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCc
Q 040113          495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDK  574 (887)
Q Consensus       495 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~  574 (887)
                                                                .+.+|..+..+++|+.|++++|.+++.+|..++.+. +
T Consensus       321 ------------------------------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~  357 (968)
T PLN00113        321 ------------------------------------------TGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-N  357 (968)
T ss_pred             ------------------------------------------CCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-C
Confidence                                                      334556678889999999999999999999999988 7


Q ss_pred             ceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccC
Q 040113          575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS  654 (887)
Q Consensus       575 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~  654 (887)
                      |+.|++++|++++.+|..+..+++|+.|++++|++.+.+|..+..+++|+.|++++|++++..|..+..+++|+.|++++
T Consensus       358 L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~  437 (968)
T PLN00113        358 LTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISN  437 (968)
T ss_pred             CcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeee
Q 040113          655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMN  734 (887)
Q Consensus       655 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (887)
                      |++.+.++...  ..+++|+.|++++|++.+.+|... .                                         
T Consensus       438 N~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~p~~~-~-----------------------------------------  473 (968)
T PLN00113        438 NNLQGRINSRK--WDMPSLQMLSLARNKFFGGLPDSF-G-----------------------------------------  473 (968)
T ss_pred             CcccCccChhh--ccCCCCcEEECcCceeeeecCccc-c-----------------------------------------
Confidence            99999887665  678999999999999998877431 0                                         


Q ss_pred             eccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040113          735 NKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ  814 (887)
Q Consensus       735 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~  814 (887)
                                 ...|+.|++++|++++.+|..+.++++|+.|+|++|++++.+|..++++++|++|+|++|+++|.+|..
T Consensus       474 -----------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~  542 (968)
T PLN00113        474 -----------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPAS  542 (968)
T ss_pred             -----------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChh
Confidence                       246899999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCC
Q 040113          815 LVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLC  856 (887)
Q Consensus       815 l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lc  856 (887)
                      ++.+++|++|++++|+++|.+|.. ..+..+....+.+|...+
T Consensus       543 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~  585 (968)
T PLN00113        543 FSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHG  585 (968)
T ss_pred             HhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCccee
Confidence            999999999999999999999975 223334444555665443

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=3.7e-36  Score=314.23  Aligned_cols=367  Identities=27%  Similarity=0.319  Sum_probs=228.4

Q ss_pred             CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEcc
Q 040113          231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLS  310 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  310 (887)
                      .-+.|++++|++....+..|.++++|+.+++..|.++ .+|...+...+|+.|+|.+|.|...-.+.++.++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4456777777777777777777777777777777775 566655555668888888888877777777778888888888


Q ss_pred             CCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCcc
Q 040113          311 FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG  390 (887)
Q Consensus       311 ~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  390 (887)
                      .|.++ .++... +..-.++++|+|++|.|+......|..+.+|..|.|++|+++...+..|.++++|+.|+|..|++..
T Consensus       158 rN~is-~i~~~s-fp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~iri  235 (873)
T KOG4194|consen  158 RNLIS-EIPKPS-FPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRI  235 (873)
T ss_pred             hchhh-cccCCC-CCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceee
Confidence            88777 444321 4444678888888888877777778888888888888888886666677778888888888887765


Q ss_pred             ccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccc
Q 040113          391 TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL  470 (887)
Q Consensus       391 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~  470 (887)
                      .....  |.++++|+.|.+..|.|..+..                        ..|-.+.++++|+|+.|+++..-..|+
T Consensus       236 ve~lt--FqgL~Sl~nlklqrN~I~kL~D------------------------G~Fy~l~kme~l~L~~N~l~~vn~g~l  289 (873)
T KOG4194|consen  236 VEGLT--FQGLPSLQNLKLQRNDISKLDD------------------------GAFYGLEKMEHLNLETNRLQAVNEGWL  289 (873)
T ss_pred             ehhhh--hcCchhhhhhhhhhcCcccccC------------------------cceeeecccceeecccchhhhhhcccc
Confidence            44444  6777777777777776655542                        234455666777777777766666666


Q ss_pred             cccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCC
Q 040113          471 LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSL  550 (887)
Q Consensus       471 ~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L  550 (887)
                      +.  +++|++|++|+|.+..+....+..                        .+++.+|+++.|++...-+..|..+..|
T Consensus       290 fg--Lt~L~~L~lS~NaI~rih~d~Wsf------------------------tqkL~~LdLs~N~i~~l~~~sf~~L~~L  343 (873)
T KOG4194|consen  290 FG--LTSLEQLDLSYNAIQRIHIDSWSF------------------------TQKLKELDLSSNRITRLDEGSFRVLSQL  343 (873)
T ss_pred             cc--cchhhhhccchhhhheeecchhhh------------------------cccceeEeccccccccCChhHHHHHHHh
Confidence            65  666666666666666554332110                        1122222222223333333444455555


Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCc---cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN---TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~---~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|.|++|.++...-..|..+. +|+.|||++|.+++.+.+   .|..+++|+.|++.+|++..+...+|.++..|+.|+
T Consensus       344 e~LnLs~Nsi~~l~e~af~~ls-sL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~Ld  422 (873)
T KOG4194|consen  344 EELNLSHNSIDHLAEGAFVGLS-SLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLD  422 (873)
T ss_pred             hhhcccccchHHHHhhHHHHhh-hhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceec
Confidence            5555555555544444444444 455555555555544432   345555555555555555544445555555555555


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccC
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQS  654 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~  654 (887)
                      |.+|.|..+-|.+|..+ .|+.|.+..
T Consensus       423 L~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  423 LGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             CCCCcceeecccccccc-hhhhhhhcc
Confidence            55555555555555555 555554433

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=4.6e-39  Score=322.03  Aligned_cols=478  Identities=31%  Similarity=0.386  Sum_probs=378.2

Q ss_pred             EEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEE
Q 040113          103 VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLD  182 (887)
Q Consensus       103 v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~  182 (887)
                      ...+++++|.+.-.. +  ++.++..|.+|++++|++..  +|++++.+..++.|+.++|++ ..+|..++.+.+|++|+
T Consensus        47 l~~lils~N~l~~l~-~--dl~nL~~l~vl~~~~n~l~~--lp~aig~l~~l~~l~vs~n~l-s~lp~~i~s~~~l~~l~  120 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLR-E--DLKNLACLTVLNVHDNKLSQ--LPAAIGELEALKSLNVSHNKL-SELPEQIGSLISLVKLD  120 (565)
T ss_pred             hhhhhhccCchhhcc-H--hhhcccceeEEEeccchhhh--CCHHHHHHHHHHHhhcccchH-hhccHHHhhhhhhhhhh
Confidence            568889998876432 2  78899999999999999984  899999999999999999998 57999999999999999


Q ss_pred             ccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCc
Q 040113          183 LSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS  262 (887)
Q Consensus       183 l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls  262 (887)
                      .+.|..       ..++..++.+..|..++..+|+++. .|.++..+.+|..+++.+|.+....|..+. ++.|++||..
T Consensus       121 ~s~n~~-------~el~~~i~~~~~l~dl~~~~N~i~s-lp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~ld~~  191 (565)
T KOG0472|consen  121 CSSNEL-------KELPDSIGRLLDLEDLDATNNQISS-LPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKHLDCN  191 (565)
T ss_pred             ccccce-------eecCchHHHHhhhhhhhcccccccc-CchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHhcccc
Confidence            999984       4456788899999999999999874 577788999999999999999865555555 9999999999


Q ss_pred             CCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113          263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       263 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  342 (887)
                      .|.+. .+|+.++.+.+|+.|++..|.+. ..| .|..|..|++++++.|++. .+|.. ...+++++..||+.+|+++ 
T Consensus       192 ~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef~gcs~L~Elh~g~N~i~-~lpae-~~~~L~~l~vLDLRdNklk-  265 (565)
T KOG0472|consen  192 SNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EFPGCSLLKELHVGENQIE-MLPAE-HLKHLNSLLVLDLRDNKLK-  265 (565)
T ss_pred             hhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CCCccHHHHHHHhcccHHH-hhHHH-Hhcccccceeeeccccccc-
Confidence            99874 88999999999999999999998 677 7999999999999999997 66655 2558999999999999998 


Q ss_pred             ccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhh---hcCCCCCCE----EEccCCccc
Q 040113          343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL---LVSLKNLEV----LSLSSNWLS  415 (887)
Q Consensus       343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~---l~~l~~L~~----L~L~~n~i~  415 (887)
                      ..|+.+..+++|++||+++|.++ .+|..++++ .|+.|.+.+|.+...-..-..   -.-++.|+.    =.++...-.
T Consensus       266 e~Pde~clLrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~  343 (565)
T KOG0472|consen  266 EVPDEICLLRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGG  343 (565)
T ss_pred             cCchHHHHhhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCccc
Confidence            78999999999999999999998 578889999 999999999997643221100   000111111    001111000


Q ss_pred             ccc--c-----ccCCCCCCCeeEEeeCCCCCcccChhhhcCCc---ccEEecccCcccCCCCccccccCCCCCcEEEccC
Q 040113          416 LLT--K-----VTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH---LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH  485 (887)
Q Consensus       416 ~~~--~-----~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~---L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~  485 (887)
                      ...  .     .+........+.+++++-.++.+|+.+.....   ...++++.|++. .+|..+..  +..+       
T Consensus       344 ~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~--lkel-------  413 (565)
T KOG0472|consen  344 TETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVE--LKEL-------  413 (565)
T ss_pred             ccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHh-hhhhhhHH--HHHH-------
Confidence            000  0     01111344677888999899999987655444   789999999997 66765543  2211       


Q ss_pred             CcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCC
Q 040113          486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP  565 (887)
Q Consensus       486 n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p  565 (887)
                                         ...+.++                      |+..+.+|..++.+++|..|++++|-+. .+|
T Consensus       414 -------------------vT~l~ls----------------------nn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP  451 (565)
T KOG0472|consen  414 -------------------VTDLVLS----------------------NNKISFVPLELSQLQKLTFLDLSNNLLN-DLP  451 (565)
T ss_pred             -------------------HHHHHhh----------------------cCccccchHHHHhhhcceeeecccchhh-hcc
Confidence                               1112222                      2233466777888999999999998886 788


Q ss_pred             CcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCC
Q 040113          566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP  645 (887)
Q Consensus       566 ~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~  645 (887)
                      ..++.+. .|+.|+++.|++. .+|.....+..++.+-.++|++....|..+.++.+|.+|||.+|.+..+ |..+++++
T Consensus       452 ~e~~~lv-~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~I-Pp~Lgnmt  528 (565)
T KOG0472|consen  452 EEMGSLV-RLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQI-PPILGNMT  528 (565)
T ss_pred             hhhhhhh-hhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhC-Chhhcccc
Confidence            8888888 6999999999885 6677777778888888888999977777799999999999999999866 67899999


Q ss_pred             CCCEEEccCCccc
Q 040113          646 NLTVLILQSNKFY  658 (887)
Q Consensus       646 ~L~~L~L~~N~l~  658 (887)
                      +|++|++.+|+|.
T Consensus       529 nL~hLeL~gNpfr  541 (565)
T KOG0472|consen  529 NLRHLELDGNPFR  541 (565)
T ss_pred             ceeEEEecCCccC
Confidence            9999999999987

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=4.2e-35  Score=306.38  Aligned_cols=368  Identities=25%  Similarity=0.278  Sum_probs=223.5

Q ss_pred             CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113          281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG  360 (887)
Q Consensus       281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  360 (887)
                      +.|++++|.+....+..|.++++|+++++..|.++ .+|..  .+...+|+.|+|.+|.|+......+..++.|+.|||+
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f--~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRF--GHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccc--cccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            45666666666555666666666666666666665 55542  2333346666666666665555556666666666666


Q ss_pred             CCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113          361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI  440 (887)
Q Consensus       361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~  440 (887)
                      .|.|+..-...|..-.++++|+|++|.++......  |..+.+|..|.|+.|+++.++                      
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~--F~~lnsL~tlkLsrNrittLp----------------------  213 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGH--FDSLNSLLTLKLSRNRITTLP----------------------  213 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeecccccccccccc--ccccchheeeecccCcccccC----------------------
Confidence            66666444444555556666666666665444333  344444444444444443333                      


Q ss_pred             ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113          441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP  520 (887)
Q Consensus       441 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  520 (887)
                        +..|..+++|+.|+|..|++.-  -+++                                                  
T Consensus       214 --~r~Fk~L~~L~~LdLnrN~iri--ve~l--------------------------------------------------  239 (873)
T KOG4194|consen  214 --QRSFKRLPKLESLDLNRNRIRI--VEGL--------------------------------------------------  239 (873)
T ss_pred             --HHHhhhcchhhhhhccccceee--ehhh--------------------------------------------------
Confidence              1223445555555555555431  1111                                                  


Q ss_pred             CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113          521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG  600 (887)
Q Consensus       521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  600 (887)
                                            .|..+++|+.|.|..|.++..-...|..+. +++.|+|+.|++...-.+++.+++.|+
T Consensus       240 ----------------------tFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~-kme~l~L~~N~l~~vn~g~lfgLt~L~  296 (873)
T KOG4194|consen  240 ----------------------TFQGLPSLQNLKLQRNDISKLDDGAFYGLE-KMEHLNLETNRLQAVNEGWLFGLTSLE  296 (873)
T ss_pred             ----------------------hhcCchhhhhhhhhhcCcccccCcceeeec-ccceeecccchhhhhhcccccccchhh
Confidence                                  244455556666666666555555555555 466666666666655556666666777


Q ss_pred             EEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCC
Q 040113          601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN  680 (887)
Q Consensus       601 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~  680 (887)
                      .|++|+|.|..+.++++.-+++|++|+|++|+|+...+..|..+..|++|+|++|.+..+-...+  ..+++|++|||++
T Consensus       297 ~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af--~~lssL~~LdLr~  374 (873)
T KOG4194|consen  297 QLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAF--VGLSSLHKLDLRS  374 (873)
T ss_pred             hhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHhhHH--HHhhhhhhhcCcC
Confidence            77777777776666667777777777777777777777777777777777777777665533333  5567777777777


Q ss_pred             CcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCC
Q 040113          681 NRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFD  760 (887)
Q Consensus       681 N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~  760 (887)
                      |.+++.|.... .                                               .|.+ +++|+.|+|.+|++.
T Consensus       375 N~ls~~IEDaa-~-----------------------------------------------~f~g-l~~LrkL~l~gNqlk  405 (873)
T KOG4194|consen  375 NELSWCIEDAA-V-----------------------------------------------AFNG-LPSLRKLRLTGNQLK  405 (873)
T ss_pred             CeEEEEEecch-h-----------------------------------------------hhcc-chhhhheeecCceee
Confidence            77765554320 0                                               0111 456777888888887


Q ss_pred             ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCC
Q 040113          761 GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN  804 (887)
Q Consensus       761 ~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~  804 (887)
                      .+.-.+|..+.+|++|||.+|.|....|.+|..+ .|+.|.+..
T Consensus       406 ~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~nS  448 (873)
T KOG4194|consen  406 SIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPM-ELKELVMNS  448 (873)
T ss_pred             ecchhhhccCcccceecCCCCcceeecccccccc-hhhhhhhcc
Confidence            6666678888888888888888888888888877 777776644

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=2.8e-37  Score=309.33  Aligned_cols=485  Identities=30%  Similarity=0.387  Sum_probs=383.6

Q ss_pred             cccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHh
Q 040113          123 LFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLV  202 (887)
Q Consensus       123 l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~  202 (887)
                      ...-.-|+.|.+++|.+..  +-+.+.++..|.+|++.+|.++ .+|++++++..++.+++++|++       ..+|..+
T Consensus        41 wW~qv~l~~lils~N~l~~--l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~l-------s~lp~~i  110 (565)
T KOG0472|consen   41 WWEQVDLQKLILSHNDLEV--LREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKL-------SELPEQI  110 (565)
T ss_pred             hhhhcchhhhhhccCchhh--ccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchH-------hhccHHH
Confidence            3344568889999999874  5667999999999999999984 7888999999999999999984       4568889


Q ss_pred             hcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCE
Q 040113          203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK  282 (887)
Q Consensus       203 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  282 (887)
                      +.+.+|++|+.++|.+. ..+++++.+..|+.++..+|++. ..|+++.++.+|..+++.+|++....|..+. ++.|++
T Consensus       111 ~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~-m~~L~~  187 (565)
T KOG0472|consen  111 GSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIA-MKRLKH  187 (565)
T ss_pred             hhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHH-HHHHHh
Confidence            99999999999999987 45677899999999999999998 6788899999999999999999855555454 999999


Q ss_pred             EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc-CCCCCccEEEccC
Q 040113          283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGR  361 (887)
Q Consensus       283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~  361 (887)
                      |+...|.+. .+|+.++.+.+|+.|++..|++. .+| +  |.++..|+++.++.|++. .+|+.. .+++++..||+.+
T Consensus       188 ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-e--f~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRd  261 (565)
T KOG0472|consen  188 LDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-E--FPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRD  261 (565)
T ss_pred             cccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-C--CCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccc
Confidence            999999987 78999999999999999999998 677 4  889999999999999997 556555 4899999999999


Q ss_pred             CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCC----CCCCe----eEEe
Q 040113          362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT----TSQKF----TVVG  433 (887)
Q Consensus       362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~----~~~~L----~~l~  433 (887)
                      |++. .+|..+.-+.+|.+||+++|.+++..+ .  ++++ .|+.|.+.+|++..+.......    .+..|    +.-.
T Consensus       262 Nklk-e~Pde~clLrsL~rLDlSNN~is~Lp~-s--Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  262 NKLK-EVPDEICLLRSLERLDLSNNDISSLPY-S--LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             cccc-cCchHHHHhhhhhhhcccCCccccCCc-c--cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence            9998 688999999999999999999987654 3  7888 9999999999976553221111    01111    1111


Q ss_pred             eCCCCC---c--ccCh----hhhcCCcccEEecccCcccCCCCccccccCC-CCCcEEEccCCcccCccccccccCCccc
Q 040113          434 LRSCNL---I--EFPN----FLKNQHHLMLLDLSSNRIHGKIPSWLLDPST-QNLSALNLSHNLLTGFDQQLVVLPGGKR  503 (887)
Q Consensus       434 l~~~~l---~--~~~~----~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~~~~~  503 (887)
                      ++...-   +  ..+.    ......+.+.|++++-+++ .+|...+...- .-.+..++++|++.              
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~--------------  401 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC--------------  401 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhhcceEEEecccchHh--------------
Confidence            111111   0  1111    1233556788999988887 56766654111 11333444444433              


Q ss_pred             cccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCC-eEEcCCCccCCCCCCcccccCCcceEEecCC
Q 040113          504 FLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLE-ILVLSHNNLSGLLPRCLGSFSDKLSILDLRA  582 (887)
Q Consensus       504 ~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~-~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~  582 (887)
                                                         ++|..+..+..+. .+.+++|.++ -+|..+..++ +|..|++++
T Consensus       402 -----------------------------------elPk~L~~lkelvT~l~lsnn~is-fv~~~l~~l~-kLt~L~L~N  444 (565)
T KOG0472|consen  402 -----------------------------------ELPKRLVELKELVTDLVLSNNKIS-FVPLELSQLQ-KLTFLDLSN  444 (565)
T ss_pred             -----------------------------------hhhhhhHHHHHHHHHHHhhcCccc-cchHHHHhhh-cceeeeccc
Confidence                                               3444444444443 4566666664 8888899998 799999999


Q ss_pred             CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 040113          583 NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR  662 (887)
Q Consensus       583 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  662 (887)
                      |-+. .+|..++.+..|+.|+++.|+|. ..|..+.....|+.+-.++|++....|..+.++.+|++|||.+|.+..+.|
T Consensus       445 N~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq~IPp  522 (565)
T KOG0472|consen  445 NLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQQIPP  522 (565)
T ss_pred             chhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchhhCCh
Confidence            9886 56888889999999999999998 788888888889999999999999999889999999999999999987654


Q ss_pred             CCccccCCCCCCEEEcCCCcCcccCChh
Q 040113          663 EPRIDCGFSKLRIIDLSNNRFTGKLPSK  690 (887)
Q Consensus       663 ~~~~~~~l~~L~~L~Ls~N~l~~~ip~~  690 (887)
                      .-   +++++|+.|++++|+|.  .|..
T Consensus       523 ~L---gnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  523 IL---GNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             hh---ccccceeEEEecCCccC--CCHH
Confidence            43   79999999999999997  5654

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=5.9e-35  Score=321.82  Aligned_cols=209  Identities=31%  Similarity=0.383  Sum_probs=115.8

Q ss_pred             EECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEE
Q 040113          157 LNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLS  236 (887)
Q Consensus       157 L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~  236 (887)
                      +|++.+.+ ..||..+..-..++.|+++.|..                              -...-+.+.+.-+|+.|+
T Consensus         3 vd~s~~~l-~~ip~~i~~~~~~~~ln~~~N~~------------------------------l~~pl~~~~~~v~L~~l~   51 (1081)
T KOG0618|consen    3 VDASDEQL-ELIPEQILNNEALQILNLRRNSL------------------------------LSRPLEFVEKRVKLKSLD   51 (1081)
T ss_pred             cccccccC-cccchhhccHHHHHhhhcccccc------------------------------ccCchHHhhheeeeEEee
Confidence            45666655 45666665544466666666642                              111112222233355555


Q ss_pred             cccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113          237 LHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG  316 (887)
Q Consensus       237 L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  316 (887)
                      +++|.+. ..|..+..+.+|+.|+++.|.+. ..|....++.+|+++.|.+|.+. ..|..+..+.+|++|+++.|.+. 
T Consensus        52 lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-  127 (1081)
T KOG0618|consen   52 LSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-  127 (1081)
T ss_pred             ccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-
Confidence            5555544 45555556666666666666554 45555666666666666666665 56666666666666666666665 


Q ss_pred             CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhh
Q 040113          317 EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF  396 (887)
Q Consensus       317 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  396 (887)
                      .+|..  +..++.++.+..++|.....    ++... ++.+++..|.+.+.++..+..++.  .|+|.+|.+. ...   
T Consensus       128 ~~Pl~--i~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~~d---  194 (1081)
T KOG0618|consen  128 PIPLV--IEVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-VLD---  194 (1081)
T ss_pred             CCchh--HHhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-hhh---
Confidence            55544  55566666666666622111    22221 566666666666666555555554  5677777665 211   


Q ss_pred             hhcCCCCCCEEEccCCcc
Q 040113          397 LLVSLKNLEVLSLSSNWL  414 (887)
Q Consensus       397 ~l~~l~~L~~L~L~~n~i  414 (887)
                       +..+++|+.+....|.+
T Consensus       195 -ls~~~~l~~l~c~rn~l  211 (1081)
T KOG0618|consen  195 -LSNLANLEVLHCERNQL  211 (1081)
T ss_pred             -hhhccchhhhhhhhccc
Confidence             45556666666555533

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=1.4e-34  Score=318.89  Aligned_cols=512  Identities=28%  Similarity=0.349  Sum_probs=268.6

Q ss_pred             EECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEE
Q 040113          132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETL  211 (887)
Q Consensus       132 L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L  211 (887)
                      +|++...+.  .||..+-.-..++.|+++.|.+....-+.+.+..+|+.||+++|.+       ..+|..+..+.+|+.|
T Consensus         3 vd~s~~~l~--~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~-------~~fp~~it~l~~L~~l   73 (1081)
T KOG0618|consen    3 VDASDEQLE--LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQI-------SSFPIQITLLSHLRQL   73 (1081)
T ss_pred             cccccccCc--ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeecccccc-------ccCCchhhhHHHHhhc
Confidence            344444444  2566666656677777777766433223344455577777776653       2233344444555555


Q ss_pred             EccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCC
Q 040113          212 DLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLS  291 (887)
Q Consensus       212 ~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  291 (887)
                      +++.|.+.. .|.+..++.+|++|.|.+|.+. ..|..+..+++|++|++++|.+. .+|..+..++.++.+..++|...
T Consensus        74 n~s~n~i~~-vp~s~~~~~~l~~lnL~~n~l~-~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~  150 (1081)
T KOG0618|consen   74 NLSRNYIRS-VPSSCSNMRNLQYLNLKNNRLQ-SLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKI  150 (1081)
T ss_pred             ccchhhHhh-Cchhhhhhhcchhheeccchhh-cCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhh
Confidence            555554432 2344555555555555555544 44555555555555555555553 44444555555555555555111


Q ss_pred             CccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc
Q 040113          292 GELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS  371 (887)
Q Consensus       292 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~  371 (887)
                      ..    ++... ++.+++..|.+.+                          .++..+..+..  .|++.+|.+. .  ..
T Consensus       151 ~~----lg~~~-ik~~~l~~n~l~~--------------------------~~~~~i~~l~~--~ldLr~N~~~-~--~d  194 (1081)
T KOG0618|consen  151 QR----LGQTS-IKKLDLRLNVLGG--------------------------SFLIDIYNLTH--QLDLRYNEME-V--LD  194 (1081)
T ss_pred             hh----hcccc-chhhhhhhhhccc--------------------------chhcchhhhhe--eeecccchhh-h--hh
Confidence            11    11111 4444444444444                          44444443333  3445554443 1  12


Q ss_pred             ccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCc
Q 040113          372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH  451 (887)
Q Consensus       372 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~  451 (887)
                      +..+.+|+.+....|++....      -..++|+.|+.+.|.+...   .....+.++++++++.+.+..+|+|+..+.+
T Consensus       195 ls~~~~l~~l~c~rn~ls~l~------~~g~~l~~L~a~~n~l~~~---~~~p~p~nl~~~dis~n~l~~lp~wi~~~~n  265 (1081)
T KOG0618|consen  195 LSNLANLEVLHCERNQLSELE------ISGPSLTALYADHNPLTTL---DVHPVPLNLQYLDISHNNLSNLPEWIGACAN  265 (1081)
T ss_pred             hhhccchhhhhhhhcccceEE------ecCcchheeeeccCcceee---ccccccccceeeecchhhhhcchHHHHhccc
Confidence            334445555555555443221      1234555555555544411   1122334444455555555555555555555


Q ss_pred             ccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEc
Q 040113          452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV  531 (887)
Q Consensus       452 L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l  531 (887)
                      |+.+++.+|+++ .+|..                                                              
T Consensus       266 le~l~~n~N~l~-~lp~r--------------------------------------------------------------  282 (1081)
T KOG0618|consen  266 LEALNANHNRLV-ALPLR--------------------------------------------------------------  282 (1081)
T ss_pred             ceEecccchhHH-hhHHH--------------------------------------------------------------
Confidence            555555555542 22222                                                              


Q ss_pred             cCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCc-ccEEEccCCeee
Q 040113          532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR-LGMIDLSHNLFQ  610 (887)
Q Consensus       532 ~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~-L~~L~Ls~N~l~  610 (887)
                                  +....+|+.|++..|.+. .+|....++. +|+.|+|..|++....+..|..... |..|+.+.|++.
T Consensus       283 ------------i~~~~~L~~l~~~~nel~-yip~~le~~~-sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~  348 (1081)
T KOG0618|consen  283 ------------ISRITSLVSLSAAYNELE-YIPPFLEGLK-SLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLS  348 (1081)
T ss_pred             ------------HhhhhhHHHHHhhhhhhh-hCCCcccccc-eeeeeeehhccccccchHHHhhhhHHHHHHhhhhcccc
Confidence                        223334444444444443 3344444444 3555555555543322222222222 455555555555


Q ss_pred             eeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChh
Q 040113          611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK  690 (887)
Q Consensus       611 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~  690 (887)
                      ......=...+.|+.|++.+|.++...-..+...++|++|+|++|++........  .++..|++|+||+|+++ .+|..
T Consensus       349 ~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~--~kle~LeeL~LSGNkL~-~Lp~t  425 (1081)
T KOG0618|consen  349 TLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL--RKLEELEELNLSGNKLT-TLPDT  425 (1081)
T ss_pred             ccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH--hchHHhHHHhcccchhh-hhhHH
Confidence            3222222334567777777777777666667777777777777777765533332  56677777777777776 56633


Q ss_pred             hhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc
Q 040113          691 SFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL  770 (887)
Q Consensus       691 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l  770 (887)
                       ...                                                   ...|++|...+|++. ..| ++.++
T Consensus       426 -va~---------------------------------------------------~~~L~tL~ahsN~l~-~fP-e~~~l  451 (1081)
T KOG0618|consen  426 -VAN---------------------------------------------------LGRLHTLRAHSNQLL-SFP-ELAQL  451 (1081)
T ss_pred             -HHh---------------------------------------------------hhhhHHHhhcCCcee-ech-hhhhc
Confidence             222                                                   233556666677776 556 78888


Q ss_pred             cCCCEEeCCCCcccc-cCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCC
Q 040113          771 KGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGR  839 (887)
Q Consensus       771 ~~L~~L~Ls~N~l~~-~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~  839 (887)
                      +.|+.+|+|.|+++. .+|..... ++|++|||++|.-.-..-+.|..+.++...++.-|    .+|++.
T Consensus       452 ~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLdlSGN~~l~~d~~~l~~l~~l~~~~i~~~----~~~d~~  516 (1081)
T KOG0618|consen  452 PQLKVLDLSCNNLSEVTLPEALPS-PNLKYLDLSGNTRLVFDHKTLKVLKSLSQMDITLN----NTPDGN  516 (1081)
T ss_pred             CcceEEecccchhhhhhhhhhCCC-cccceeeccCCcccccchhhhHHhhhhhheecccC----CCCccc
Confidence            888888888888875 34443332 78888888888744344455566666666666555    566664

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=6.2e-32  Score=284.08  Aligned_cols=374  Identities=29%  Similarity=0.421  Sum_probs=242.7

Q ss_pred             CCCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          205 LSNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       205 l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      ++-.+-.|+++|.++ +..|..+..+++++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.+
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv   83 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSV   83 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHH
Confidence            334455566666665 345666666666666666666655 45666666666666666666664 233445566666666


Q ss_pred             EccCCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCC
Q 040113          284 DLSINNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC  362 (887)
Q Consensus       284 ~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  362 (887)
                      .+..|++.. -+|..+..+..|..|||+.|++. ..|..  +...+++-.|+|++|+|.......+.++..|-.|+|++|
T Consensus        84 ~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~--LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~N  160 (1255)
T KOG0444|consen   84 IVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTN--LEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNN  160 (1255)
T ss_pred             hhhccccccCCCCchhcccccceeeecchhhhh-hcchh--hhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccc
Confidence            666666532 35555666666777777777666 55655  556666666777777666333334556666667777777


Q ss_pred             cCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113          363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF  442 (887)
Q Consensus       363 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~  442 (887)
                      ++. .+|+.+..+..|++|+|++|.+.-.....  +..+++|+.|.+++.+-+                       +..+
T Consensus       161 rLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ--LPsmtsL~vLhms~TqRT-----------------------l~N~  214 (1255)
T KOG0444|consen  161 RLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ--LPSMTSLSVLHMSNTQRT-----------------------LDNI  214 (1255)
T ss_pred             hhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc--Cccchhhhhhhcccccch-----------------------hhcC
Confidence            665 45666666777777777777654221111  333344444444443111                       1257


Q ss_pred             ChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCC
Q 040113          443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP  522 (887)
Q Consensus       443 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  522 (887)
                      |..+..+.+|..+|++.|.+. .+|+.+..  +++|+.|+||+|+++.....                            
T Consensus       215 Ptsld~l~NL~dvDlS~N~Lp-~vPecly~--l~~LrrLNLS~N~iteL~~~----------------------------  263 (1255)
T KOG0444|consen  215 PTSLDDLHNLRDVDLSENNLP-IVPECLYK--LRNLRRLNLSGNKITELNMT----------------------------  263 (1255)
T ss_pred             CCchhhhhhhhhccccccCCC-cchHHHhh--hhhhheeccCcCceeeeecc----------------------------
Confidence            777888888888888888886 67777776  78888888888877764422                            


Q ss_pred             CCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc-ccCCccccCCCcccE
Q 040113          523 PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF-GTIPNTFMKESRLGM  601 (887)
Q Consensus       523 ~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~  601 (887)
                                           .....+|+.|++|.|+++ .+|+++++++ .|+.|++.+|+++ .-+|..++.+.+|+.
T Consensus       264 ---------------------~~~W~~lEtLNlSrNQLt-~LP~avcKL~-kL~kLy~n~NkL~FeGiPSGIGKL~~Lev  320 (1255)
T KOG0444|consen  264 ---------------------EGEWENLETLNLSRNQLT-VLPDAVCKLT-KLTKLYANNNKLTFEGIPSGIGKLIQLEV  320 (1255)
T ss_pred             ---------------------HHHHhhhhhhccccchhc-cchHHHhhhH-HHHHHHhccCcccccCCccchhhhhhhHH
Confidence                                 222345666777777766 6677777776 5777777777664 345667777777888


Q ss_pred             EEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113          602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR  665 (887)
Q Consensus       602 L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  665 (887)
                      +..++|++. .+|..+..|..|+.|.|+.|++... |+.+.-++.|++||+..|+-....|.+.
T Consensus       321 f~aanN~LE-lVPEglcRC~kL~kL~L~~NrLiTL-PeaIHlL~~l~vLDlreNpnLVMPPKP~  382 (1255)
T KOG0444|consen  321 FHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLITL-PEAIHLLPDLKVLDLRENPNLVMPPKPN  382 (1255)
T ss_pred             HHhhccccc-cCchhhhhhHHHHHhcccccceeec-hhhhhhcCCcceeeccCCcCccCCCCcc
Confidence            888877776 7777888888888888888887765 7777788888888888887666655543

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.96  E-value=4e-31  Score=278.04  Aligned_cols=250  Identities=28%  Similarity=0.393  Sum_probs=154.8

Q ss_pred             CCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcC
Q 040113          126 LVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKL  205 (887)
Q Consensus       126 l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l  205 (887)
                      ++..|-.|+++|.+++..+|.....++.++.|.|....+ ..+|..++.|.+|++|.+++|++..+              
T Consensus         6 LpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L-~~vPeEL~~lqkLEHLs~~HN~L~~v--------------   70 (1255)
T KOG0444|consen    6 LPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKL-EQVPEELSRLQKLEHLSMAHNQLISV--------------   70 (1255)
T ss_pred             cceeecccccCCcCCCCcCchhHHHhhheeEEEechhhh-hhChHHHHHHhhhhhhhhhhhhhHhh--------------
Confidence            445566677777777666777777777777777777666 46677777777777777777762211              


Q ss_pred             CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113          206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD  284 (887)
Q Consensus       206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  284 (887)
                                       -..++.++.|+.+.+.+|++.. -+|..+-.+..|+.|||++|++. +.|..+..-+++-+|+
T Consensus        71 -----------------hGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLN  132 (1255)
T KOG0444|consen   71 -----------------HGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLN  132 (1255)
T ss_pred             -----------------hhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEE
Confidence                             1224445555555555555432 35556666667777777777664 5666666666777777


Q ss_pred             ccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcC
Q 040113          285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF  364 (887)
Q Consensus       285 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  364 (887)
                      |++|+|.......|.+++.|-.|||++|++. .+|..  +..+..|++|+|++|.+...--..+..+.+|+.|++++.+-
T Consensus       133 LS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ--~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqR  209 (1255)
T KOG0444|consen  133 LSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQ--IRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQR  209 (1255)
T ss_pred             cccCccccCCchHHHhhHhHhhhccccchhh-hcCHH--HHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccc
Confidence            7777776444445566777777777777776 45544  56667777777777766533333344456666777776543


Q ss_pred             C-ccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcc
Q 040113          365 S-GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL  414 (887)
Q Consensus       365 ~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i  414 (887)
                      + ..+|.++..+.+|..+|++.|.+... |..  +..+++|+.|+|++|.|
T Consensus       210 Tl~N~Ptsld~l~NL~dvDlS~N~Lp~v-Pec--ly~l~~LrrLNLS~N~i  257 (1255)
T KOG0444|consen  210 TLDNIPTSLDDLHNLRDVDLSENNLPIV-PEC--LYKLRNLRRLNLSGNKI  257 (1255)
T ss_pred             hhhcCCCchhhhhhhhhccccccCCCcc-hHH--HhhhhhhheeccCcCce
Confidence            3 34666777777777777777766422 222  44455555555555533

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.90  E-value=8.9e-26  Score=226.94  Aligned_cols=226  Identities=23%  Similarity=0.234  Sum_probs=152.8

Q ss_pred             hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113          543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK  622 (887)
Q Consensus       543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  622 (887)
                      .|..+++|++|++++|+++++-+.+|.+.. .++.|.|..|++.......|.++..|+.|+|.+|+|+...|.+|..+..
T Consensus       269 cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a-~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~  347 (498)
T KOG4237|consen  269 CFKKLPNLRKLNLSNNKITRIEDGAFEGAA-ELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFS  347 (498)
T ss_pred             HHhhcccceEeccCCCccchhhhhhhcchh-hhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEecccccccce
Confidence            467788888888888888888888888777 6888888888887777777888888888888888888777777877777


Q ss_pred             CcEEeCCCCcCCCC-CCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc---ccCChhhhhccccc
Q 040113          623 LEFLDIGDNQIRDI-FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT---GKLPSKSFLCWNAM  698 (887)
Q Consensus       623 L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~---~~ip~~~~~~~~~l  698 (887)
                      |.+|.|-.|.+..- --.|++..       |..+...|..+-    ..-..++.++++.+.+.   ..-|++        
T Consensus       348 l~~l~l~~Np~~CnC~l~wl~~W-------lr~~~~~~~~~C----q~p~~~~~~~~~dv~~~~~~c~~~ee--------  408 (498)
T KOG4237|consen  348 LSTLNLLSNPFNCNCRLAWLGEW-------LRKKSVVGNPRC----QSPGFVRQIPISDVAFGDFRCGGPEE--------  408 (498)
T ss_pred             eeeeehccCcccCccchHHHHHH-------HhhCCCCCCCCC----CCCchhccccchhccccccccCCccc--------
Confidence            88887777766432 11222211       111121121111    01223455555554432   122221        


Q ss_pred             hhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC
Q 040113          699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL  778 (887)
Q Consensus       699 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  778 (887)
                                   ..+...-.++...+..+.-+.+.+++....+.++|...++|++.+|.++ .+|.+  .+.+| .+|+
T Consensus       409 -------------~~~~~s~~cP~~c~c~~tVvRcSnk~lk~lp~~iP~d~telyl~gn~~~-~vp~~--~~~~l-~~dl  471 (498)
T KOG4237|consen  409 -------------LGCLTSSPCPPPCTCLDTVVRCSNKLLKLLPRGIPVDVTELYLDGNAIT-SVPDE--LLRSL-LLDL  471 (498)
T ss_pred             -------------cCCCCCCCCCCCcchhhhhHhhcccchhhcCCCCCchhHHHhcccchhc-ccCHH--HHhhh-hccc
Confidence                         0011112233344556667778888888888889999999999999998 77776  67788 8999


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCC
Q 040113          779 DNNNLQGHIPSCLGNLTNLESLDLSNN  805 (887)
Q Consensus       779 s~N~l~~~~p~~l~~L~~L~~L~Ls~N  805 (887)
                      |+|+++..--..|.++++|.+|-||+|
T Consensus       472 s~n~i~~Lsn~tf~n~tql~tlilsyn  498 (498)
T KOG4237|consen  472 SNNRISSLSNYTFSNMTQLSTLILSYN  498 (498)
T ss_pred             ccCceehhhcccccchhhhheeEEecC
Confidence            999998877788889999999888876

>PLN03210 Resistant to P

Probab=99.89  E-value=1.3e-21  Score=243.55  Aligned_cols=360  Identities=23%  Similarity=0.259  Sum_probs=270.7

Q ss_pred             CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC-----CCCCccccCCC-CCCEEECCCCCCCccCCccccC
Q 040113          101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS-----SEIPSEIINLS-RLSYLNLSHSSFFGQIPSEILE  174 (887)
Q Consensus       101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~-----~~lp~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~  174 (887)
                      .+|+.+.+.-..+........++..+++|++|.+..+....     ..+|..+..++ +|+.|++.++.+ ..+|..+ .
T Consensus       532 ~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l-~~lP~~f-~  609 (1153)
T PLN03210        532 KKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPL-RCMPSNF-R  609 (1153)
T ss_pred             ceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCC-CCCCCcC-C
Confidence            45666655433332211123368889999999997664321     23677777764 699999999887 6778776 5


Q ss_pred             CCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCC
Q 040113          175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLS  254 (887)
Q Consensus       175 l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  254 (887)
                      ..+|+.|++.++.+..       ++..+..+++|+.|+++++.....+|. ++.+++|+.|++++|.....+|..+..++
T Consensus       610 ~~~L~~L~L~~s~l~~-------L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~  681 (1153)
T PLN03210        610 PENLVKLQMQGSKLEK-------LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLN  681 (1153)
T ss_pred             ccCCcEEECcCccccc-------cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccC
Confidence            7999999999998533       345567899999999998876666664 88899999999999987778899999999


Q ss_pred             CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113          255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD  334 (887)
Q Consensus       255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  334 (887)
                      +|++|++++|...+.+|..+ ++++|+.|++++|...+.+|..   ..+|++|++++|.+. .+|..  + .+++|+.|.
T Consensus       682 ~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~--~-~l~~L~~L~  753 (1153)
T PLN03210        682 KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSN--L-RLENLDELI  753 (1153)
T ss_pred             CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-ccccc--c-ccccccccc
Confidence            99999999987667788765 7899999999999876666653   468999999999986 66754  3 578888888


Q ss_pred             ccCCCCC-------CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEE
Q 040113          335 FTSNKFS-------GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVL  407 (887)
Q Consensus       335 L~~n~l~-------~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L  407 (887)
                      +.++...       ...+......++|+.|++++|...+.+|..++++++|+.|++++|...+..|..   ..+++|+.|
T Consensus       754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~sL~~L  830 (1153)
T PLN03210        754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLESLESL  830 (1153)
T ss_pred             ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccccCEE
Confidence            8775421       111222334578999999999888889999999999999999998755555544   268899999


Q ss_pred             EccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCc
Q 040113          408 SLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL  487 (887)
Q Consensus       408 ~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~  487 (887)
                      ++++|.  .+..++.  ...+++.|+++++.+..+|.++..+++|+.|++++|.-...+|.....  +++|+.+++++|.
T Consensus       831 ~Ls~c~--~L~~~p~--~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~--L~~L~~L~l~~C~  904 (1153)
T PLN03210        831 DLSGCS--RLRTFPD--ISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISK--LKHLETVDFSDCG  904 (1153)
T ss_pred             ECCCCC--ccccccc--cccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCccccc--ccCCCeeecCCCc
Confidence            999983  2222221  246788899999988888988888899999999886554556655544  6677777776663

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.88  E-value=5.6e-21  Score=237.95  Aligned_cols=345  Identities=23%  Similarity=0.302  Sum_probs=187.7

Q ss_pred             ccCCCCCCcEEeCcCCC------CCCcchhhccCCC-CCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCch
Q 040113          249 SLGNLSKLLHLDLSLNE------LLGELPVSIGNLH-SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS  321 (887)
Q Consensus       249 ~l~~l~~L~~L~Ls~n~------l~~~~p~~l~~l~-~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  321 (887)
                      +|.++++|+.|.+..+.      +...+|..+..++ +|+.|++.++.+. .+|..+ ...+|++|++.+|++. .++..
T Consensus       553 aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        553 AFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            34455555555554332      1122344444432 3566666655554 444444 3455666666666554 33333


Q ss_pred             hhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCC
Q 040113          322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL  401 (887)
Q Consensus       322 ~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l  401 (887)
                        +..+++|+.|+++++...+.+|. ++.+++|++|++++|.....+|..+..+++|+.|++++|...+..|..   .++
T Consensus       630 --~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~---i~l  703 (1153)
T PLN03210        630 --VHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTG---INL  703 (1153)
T ss_pred             --cccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCc---CCC
Confidence              44556666666665544334442 555566666666666555556666666666666666665433333332   145


Q ss_pred             CCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEE
Q 040113          402 KNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSAL  481 (887)
Q Consensus       402 ~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L  481 (887)
                      ++|+.|++++|.  .+..                      +|..   ..+|+.|++++|.+. .+|..+.   +++|+.|
T Consensus       704 ~sL~~L~Lsgc~--~L~~----------------------~p~~---~~nL~~L~L~~n~i~-~lP~~~~---l~~L~~L  752 (1153)
T PLN03210        704 KSLYRLNLSGCS--RLKS----------------------FPDI---STNISWLDLDETAIE-EFPSNLR---LENLDEL  752 (1153)
T ss_pred             CCCCEEeCCCCC--Cccc----------------------cccc---cCCcCeeecCCCccc-ccccccc---ccccccc
Confidence            566666666552  1111                      1110   123444444444432 2332221   3445555


Q ss_pred             EccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccC
Q 040113          482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS  561 (887)
Q Consensus       482 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~  561 (887)
                      ++.++....+....                 ..+.......+++++.|++++|...+.+|..++++++|+.|++++|...
T Consensus       753 ~l~~~~~~~l~~~~-----------------~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L  815 (1153)
T PLN03210        753 ILCEMKSEKLWERV-----------------QPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINL  815 (1153)
T ss_pred             cccccchhhccccc-----------------cccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCc
Confidence            54443221111000                 0000000111345566666666666677778888888888888887655


Q ss_pred             CCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccc
Q 040113          562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWL  641 (887)
Q Consensus       562 ~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~  641 (887)
                      +.+|..+ .++ +|+.|++++|.....+|..   ..+|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+
T Consensus       816 ~~LP~~~-~L~-sL~~L~Ls~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~  889 (1153)
T PLN03210        816 ETLPTGI-NLE-SLESLDLSGCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNI  889 (1153)
T ss_pred             CeeCCCC-Ccc-ccCEEECCCCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCccc
Confidence            5677665 455 6888888887655555542   356778888888877 567777788888888888754444456667


Q ss_pred             cCCCCCCEEEccCCc
Q 040113          642 GTLPNLTVLILQSNK  656 (887)
Q Consensus       642 ~~l~~L~~L~L~~N~  656 (887)
                      ..+++|+.+++++|.
T Consensus       890 ~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        890 SKLKHLETVDFSDCG  904 (1153)
T ss_pred             ccccCCCeeecCCCc
Confidence            777888888887775

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.86  E-value=1.1e-23  Score=212.00  Aligned_cols=275  Identities=23%  Similarity=0.200  Sum_probs=174.8

Q ss_pred             CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccC-CCCCCccccCCChHHHhhcCCC
Q 040113          129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSL-NSGYGLELQKPNFANLVEKLSN  207 (887)
Q Consensus       129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~-n~~~~l~~~~~~~~~~~~~l~~  207 (887)
                      -..++|..|.|+.. -|..|+.+++||.||||+|.|+..-|++|..+++|..|-+.+ |+|+.+.      ...|+++..
T Consensus        69 tveirLdqN~I~~i-P~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~------k~~F~gL~s  141 (498)
T KOG4237|consen   69 TVEIRLDQNQISSI-PPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLP------KGAFGGLSS  141 (498)
T ss_pred             ceEEEeccCCcccC-ChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhh------hhHhhhHHH
Confidence            44566667777653 345577777777777777777777777777777776665555 6655544      456777777


Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCC------------Ccchhhcc
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL------------GELPVSIG  275 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~------------~~~p~~l~  275 (887)
                      |+.|.+.-|++.-...+.|..+++|..|.+.+|.+...-...+..+..++.+.+..|.+.            ...|..++
T Consensus       142 lqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~iets  221 (498)
T KOG4237|consen  142 LQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETS  221 (498)
T ss_pred             HHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcc
Confidence            777777777777777777888888888888888776444446777778888777777632            11222333


Q ss_pred             CCCCCCEEEccCCCCCCccchhhhCC-CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc
Q 040113          276 NLHSLKKLDLSINNLSGELPTSIQNL-VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL  354 (887)
Q Consensus       276 ~l~~L~~L~L~~n~l~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L  354 (887)
                      ..+-..-..+.+.++....+..|... ..+..=-.+.+...+..|. ..|..+++|++|+|++|++++.-+.+|.....+
T Consensus       222 garc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~-~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l  300 (498)
T KOG4237|consen  222 GARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPA-KCFKKLPNLRKLNLSNNKITRIEDGAFEGAAEL  300 (498)
T ss_pred             cceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChH-HHHhhcccceEeccCCCccchhhhhhhcchhhh
Confidence            33333333344444443333333221 1111111223333333443 337777888888888888877777777777788


Q ss_pred             cEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCc
Q 040113          355 EVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW  413 (887)
Q Consensus       355 ~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~  413 (887)
                      ++|.|..|++...-...|.++..|+.|+|.+|+++...+..  |..+..|.+|.+-.|+
T Consensus       301 ~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~a--F~~~~~l~~l~l~~Np  357 (498)
T KOG4237|consen  301 QELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGA--FQTLFSLSTLNLLSNP  357 (498)
T ss_pred             hhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccc--ccccceeeeeehccCc
Confidence            88888888776555566777777777777777777666655  6666777777776663

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=7.4e-21  Score=218.86  Aligned_cols=81  Identities=27%  Similarity=0.386  Sum_probs=45.7

Q ss_pred             ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecc
Q 040113          748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVS  827 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls  827 (887)
                      .|+.|++++|.|++ +|..   .++|+.|++++|++++ +|..+   .+|+.|++++|+++ .+|..+.+++.|++|+++
T Consensus       383 ~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs  453 (788)
T PRK15387        383 GLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLPESLIHLSSETTVNLE  453 (788)
T ss_pred             ccceEEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccChHHhhccCCCeEECC
Confidence            35556666666653 3332   2356666666666653 44322   34555666666665 456666666666666666


Q ss_pred             cCcccccCCC
Q 040113          828 DNYLTGPIPQ  837 (887)
Q Consensus       828 ~N~l~g~iP~  837 (887)
                      +|+|+|.+|+
T Consensus       454 ~N~Ls~~~~~  463 (788)
T PRK15387        454 GNPLSERTLQ  463 (788)
T ss_pred             CCCCCchHHH
Confidence            6666665553

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.83  E-value=4.4e-20  Score=212.53  Aligned_cols=187  Identities=28%  Similarity=0.374  Sum_probs=118.7

Q ss_pred             CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      +|+.|++++|+++ .+|..    +++|+.|++++|++++. |..   ...|+.|++++|++++ +|. +  ..+|+.|+|
T Consensus       283 ~L~~L~Ls~N~Lt-~LP~~----p~~L~~LdLS~N~L~~L-p~l---p~~L~~L~Ls~N~L~~-LP~-l--p~~Lq~LdL  349 (788)
T PRK15387        283 GLCKLWIFGNQLT-SLPVL----PPGLQELSVSDNQLASL-PAL---PSELCKLWAYNNQLTS-LPT-L--PSGLQELSV  349 (788)
T ss_pred             hcCEEECcCCccc-ccccc----ccccceeECCCCccccC-CCC---cccccccccccCcccc-ccc-c--ccccceEec
Confidence            4555666666655 23321    12466666666666542 221   2345566666666663 332 1  136777777


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY  708 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~  708 (887)
                      ++|+++++ |..   .++|+.|++++|++..+ |..     ..+|+.|++++|+++ .+|..                  
T Consensus       350 S~N~Ls~L-P~l---p~~L~~L~Ls~N~L~~L-P~l-----~~~L~~LdLs~N~Lt-~LP~l------------------  400 (788)
T PRK15387        350 SDNQLASL-PTL---PSELYKLWAYNNRLTSL-PAL-----PSGLKELIVSGNRLT-SLPVL------------------  400 (788)
T ss_pred             CCCccCCC-CCC---CcccceehhhccccccC-ccc-----ccccceEEecCCccc-CCCCc------------------
Confidence            77777654 322   24566777777777653 221     246788888888776 34421                  


Q ss_pred             cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113          709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP  788 (887)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  788 (887)
                                                           +..|+.|++++|+|++ +|...   .+|+.|++++|+++ .+|
T Consensus       401 -------------------------------------~s~L~~LdLS~N~Lss-IP~l~---~~L~~L~Ls~NqLt-~LP  438 (788)
T PRK15387        401 -------------------------------------PSELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-RLP  438 (788)
T ss_pred             -------------------------------------ccCCCEEEccCCcCCC-CCcch---hhhhhhhhccCccc-ccC
Confidence                                                 3457788888888874 56533   45778888888888 678


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCC
Q 040113          789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELT  819 (887)
Q Consensus       789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~  819 (887)
                      ..+.++++|+.|+|++|++++.+|..+..++
T Consensus       439 ~sl~~L~~L~~LdLs~N~Ls~~~~~~L~~l~  469 (788)
T PRK15387        439 ESLIHLSSETTVNLEGNPLSERTLQALREIT  469 (788)
T ss_pred             hHHhhccCCCeEECCCCCCCchHHHHHHHHh
Confidence            8888888999999999999888888775543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=8.8e-19  Score=203.49  Aligned_cols=183  Identities=25%  Similarity=0.408  Sum_probs=97.8

Q ss_pred             CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      +|+.|++++|.+. .+|..+.   .+|+.|++++|+++. +|..+.  .+|+.|++++|++++ +|..+.  ++|+.|++
T Consensus       242 ~L~~L~Ls~N~L~-~LP~~l~---s~L~~L~Ls~N~L~~-LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~L  311 (754)
T PRK15370        242 TIQEMELSINRIT-ELPERLP---SALQSLDLFHNKISC-LPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNV  311 (754)
T ss_pred             cccEEECcCCccC-cCChhHh---CCCCEEECcCCccCc-cccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHh
Confidence            3445555555544 3343332   135555555555542 333222  245555555555553 233222  34566666


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY  708 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~  708 (887)
                      ++|+++.. |..+  .++|+.|++++|.++++ |..+    .++|+.|++++|+++ .+|...                 
T Consensus       312 s~N~Lt~L-P~~l--~~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L~-~LP~~l-----------------  365 (754)
T PRK15370        312 QSNSLTAL-PETL--PPGLKTLEAGENALTSL-PASL----PPELQVLDVSKNQIT-VLPETL-----------------  365 (754)
T ss_pred             cCCccccC-Cccc--cccceeccccCCccccC-Chhh----cCcccEEECCCCCCC-cCChhh-----------------
Confidence            66666543 3222  24566666666666553 2222    256777777777665 344321                 


Q ss_pred             cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113          709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP  788 (887)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  788 (887)
                                                           ++.|+.|+|++|.++ .+|..+.  ..|+.|++++|+++ .+|
T Consensus       366 -------------------------------------p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP  404 (754)
T PRK15370        366 -------------------------------------PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLP  404 (754)
T ss_pred             -------------------------------------cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCc
Confidence                                                 335667777777777 4455444  25777777777776 344


Q ss_pred             cc----ccCCCCCCEEeCCCCccc
Q 040113          789 SC----LGNLTNLESLDLSNNNFL  808 (887)
Q Consensus       789 ~~----l~~L~~L~~L~Ls~N~l~  808 (887)
                      ..    ++.++.+..|+|.+|+++
T Consensus       405 ~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        405 ESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             hhHHHHhhcCCCccEEEeeCCCcc
Confidence            33    334466777777777776

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.7e-18  Score=201.16  Aligned_cols=227  Identities=26%  Similarity=0.434  Sum_probs=169.6

Q ss_pred             CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113          524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID  603 (887)
Q Consensus       524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  603 (887)
                      ..+..|++++|++. .+|..+.  ++|+.|++++|+++ .+|..+.   .+|+.|+|++|++. .+|..+.  ++|+.|+
T Consensus       199 ~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~---~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~  268 (754)
T PRK15370        199 EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLT-SIPATLP---DTIQEMELSINRIT-ELPERLP--SALQSLD  268 (754)
T ss_pred             cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccc-cCChhhh---ccccEEECcCCccC-cCChhHh--CCCCEEE
Confidence            34555555555555 3454443  58999999999988 5676543   37999999999987 4565553  5799999


Q ss_pred             ccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113          604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF  683 (887)
Q Consensus       604 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  683 (887)
                      +++|+++ .+|..+.  ++|+.|++++|++++. |..+.  ++|+.|++++|+++.. |...    .++|+.|++++|.+
T Consensus       269 Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~L-P~~lp--~sL~~L~Ls~N~Lt~L-P~~l----~~sL~~L~Ls~N~L  337 (754)
T PRK15370        269 LFHNKIS-CLPENLP--EELRYLSVYDNSIRTL-PAHLP--SGITHLNVQSNSLTAL-PETL----PPGLKTLEAGENAL  337 (754)
T ss_pred             CcCCccC-ccccccC--CCCcEEECCCCccccC-cccch--hhHHHHHhcCCccccC-Cccc----cccceeccccCCcc
Confidence            9999998 4666554  5899999999999875 44332  4788999999998864 3322    36889999999988


Q ss_pred             cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccC
Q 040113          684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMI  763 (887)
Q Consensus       684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i  763 (887)
                      ++ +|..                                                      ++++|+.|++++|+|+ .+
T Consensus       338 t~-LP~~------------------------------------------------------l~~sL~~L~Ls~N~L~-~L  361 (754)
T PRK15370        338 TS-LPAS------------------------------------------------------LPPELQVLDVSKNQIT-VL  361 (754)
T ss_pred             cc-CChh------------------------------------------------------hcCcccEEECCCCCCC-cC
Confidence            73 5532                                                      1457899999999998 57


Q ss_pred             hhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccc----cCCCCCCeeecccCcccc
Q 040113          764 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQL----VELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       764 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l----~~L~~L~~L~ls~N~l~g  833 (887)
                      |..+.  +.|+.|+|++|+++ .+|..+.  .+|+.|++++|+++ .+|..+    ..++.+..+++.+|+++.
T Consensus       362 P~~lp--~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~  429 (754)
T PRK15370        362 PETLP--PTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE  429 (754)
T ss_pred             Chhhc--CCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH
Confidence            77664  68999999999999 5676654  47999999999998 455544    445788999999999873

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=9e-19  Score=189.99  Aligned_cols=281  Identities=23%  Similarity=0.246  Sum_probs=146.1

Q ss_pred             EECCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc----CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113          132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ----IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN  207 (887)
Q Consensus       132 L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~  207 (887)
                      |+|..+.+++...+..+..+.+|++|+++++.++..    ++..+...++|++|+++++.+.........++..+..+++
T Consensus         3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~   82 (319)
T cd00116           3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG   82 (319)
T ss_pred             cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence            344444444333333444444555555555554321    3333444455555555555422101011223445555666


Q ss_pred             CCEEEccCCCCCCCchhhhcCCCC---CCEEEcccCCCCC----ccccccCCC-CCCcEEeCcCCCCCCc----chhhcc
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSS---LTFLSLHSCGLQG----RIQSSLGNL-SKLLHLDLSLNELLGE----LPVSIG  275 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~---L~~L~L~~n~l~~----~~~~~l~~l-~~L~~L~Ls~n~l~~~----~p~~l~  275 (887)
                      |++|++++|.+....+..+..+.+   |++|++++|.+.+    .+...+..+ ++|+.|++++|.+++.    ++..+.
T Consensus        83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~  162 (319)
T cd00116          83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALR  162 (319)
T ss_pred             eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHH
Confidence            666666666665544444444433   7777777666652    222334455 6677777777766632    334455


Q ss_pred             CCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCccccccC
Q 040113          276 NLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGELHASIG  349 (887)
Q Consensus       276 ~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~  349 (887)
                      .+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+.....  ..+..+++|++|++++|.+++.....+.
T Consensus       163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~  242 (319)
T cd00116         163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALA  242 (319)
T ss_pred             hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHH
Confidence            566677777777776632    2334445567777777777665322111  1144566677777777766643222221


Q ss_pred             -----CCCCccEEEccCCcCCc----cCCccccCCCCCCEEEcCCCCCccccch--hhhhcCC-CCCCEEEccCC
Q 040113          350 -----NLRSLEVLAIGRCNFSG----RIPSSLRNLTQLITLDLSQNSYRGTMEL--DFLLVSL-KNLEVLSLSSN  412 (887)
Q Consensus       350 -----~l~~L~~L~L~~n~i~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~--~~~l~~l-~~L~~L~L~~n  412 (887)
                           ..+.|++|++++|.++.    .+...+..+++|+++++++|.+......  ...+... +.|+.+++.+|
T Consensus       243 ~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  317 (319)
T cd00116         243 SALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDD  317 (319)
T ss_pred             HHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCC
Confidence                 13567777777776652    1233444556777777777776644211  1113333 56666666655

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.70  E-value=8e-18  Score=182.53  Aligned_cols=260  Identities=25%  Similarity=0.257  Sum_probs=166.1

Q ss_pred             EEECCCCCCC-ccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC------CchhhhcC
Q 040113          156 YLNLSHSSFF-GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS------TIPHNLAN  228 (887)
Q Consensus       156 ~L~Ls~n~~~-~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~------~~~~~l~~  228 (887)
                      .|+|..+.+. +..+..+..+.+|+.|+++++.+..-.  ...++..+...+++++|+++++.+.+      .++..+..
T Consensus         2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~--~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~   79 (319)
T cd00116           2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEA--AKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTK   79 (319)
T ss_pred             ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHH--HHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHh
Confidence            4677777776 344555667788999999988743211  12456667778889999998887762      23455667


Q ss_pred             CCCCCEEEcccCCCCCccccccCCCCC---CcEEeCcCCCCCC----cchhhccCC-CCCCEEEccCCCCCCc----cch
Q 040113          229 LSSLTFLSLHSCGLQGRIQSSLGNLSK---LLHLDLSLNELLG----ELPVSIGNL-HSLKKLDLSINNLSGE----LPT  296 (887)
Q Consensus       229 l~~L~~L~L~~n~l~~~~~~~l~~l~~---L~~L~Ls~n~l~~----~~p~~l~~l-~~L~~L~L~~n~l~~~----~~~  296 (887)
                      +++|++|++++|.+.+..+..+..+.+   |++|++++|.+.+    .+...+..+ ++|++|++++|.+++.    ++.
T Consensus        80 ~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~  159 (319)
T cd00116          80 GCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAK  159 (319)
T ss_pred             cCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHH
Confidence            788888888888887655555544444   8888888888763    233445566 7888888888887743    334


Q ss_pred             hhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCc
Q 040113          297 SIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPS  370 (887)
Q Consensus       297 ~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~  370 (887)
                      .+..+++|++|++++|.+.+.....  ..+..+++|++|++++|.+++.    +...+..+++|++|++++|.+++....
T Consensus       160 ~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~  239 (319)
T cd00116         160 ALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAA  239 (319)
T ss_pred             HHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHH
Confidence            5566777888888888776421111  0134456788888888877643    233455667777788877777643222


Q ss_pred             ccc-----CCCCCCEEEcCCCCCc--cccchhhhhcCCCCCCEEEccCCccccc
Q 040113          371 SLR-----NLTQLITLDLSQNSYR--GTMELDFLLVSLKNLEVLSLSSNWLSLL  417 (887)
Q Consensus       371 ~l~-----~l~~L~~L~L~~n~l~--~~~~~~~~l~~l~~L~~L~L~~n~i~~~  417 (887)
                      .+.     ..+.|++|++++|.++  +.......+..+++|+++++++|.+...
T Consensus       240 ~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         240 ALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             HHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            211     2367777777777765  2222222355556677777777755543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.59  E-value=1.5e-17  Score=148.82  Aligned_cols=163  Identities=29%  Similarity=0.469  Sum_probs=120.7

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      .+..+.+++.|.|++|+++.  +|+.|..+.+|+.|++++|++ ..+|.+++.+++|++|+++.|++             
T Consensus        28 gLf~~s~ITrLtLSHNKl~~--vppnia~l~nlevln~~nnqi-e~lp~~issl~klr~lnvgmnrl-------------   91 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLTV--VPPNIAELKNLEVLNLSNNQI-EELPTSISSLPKLRILNVGMNRL-------------   91 (264)
T ss_pred             cccchhhhhhhhcccCceee--cCCcHHHhhhhhhhhcccchh-hhcChhhhhchhhhheecchhhh-------------
Confidence            55666777788888888874  677788888888888888887 56787888888888888777762             


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL  280 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  280 (887)
                                        ...|..|+.++.|++|++..|.+.. .+|..|-.++.|+.|.++.|.+. .+|..++++++|
T Consensus        92 ------------------~~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~l  152 (264)
T KOG0617|consen   92 ------------------NILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNL  152 (264)
T ss_pred             ------------------hcCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcce
Confidence                              1345556666666666666666543 46667777777888888888774 677778888888


Q ss_pred             CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCch
Q 040113          281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS  321 (887)
Q Consensus       281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~  321 (887)
                      +.|.+.+|.+. .+|..++.++.|++|++.+|+++ .+|..
T Consensus       153 qil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppe  191 (264)
T KOG0617|consen  153 QILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPE  191 (264)
T ss_pred             eEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChh
Confidence            88888888876 67788888888888888888887 45544

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.54  E-value=1.9e-16  Score=141.81  Aligned_cols=87  Identities=29%  Similarity=0.608  Sum_probs=71.2

Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC---CCe
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF---LEF  823 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~---L~~  823 (887)
                      ..|+-|+|++|.|. .+|..++++++||.|.+..|.+. .+|..++.|++|++|.+.+|+++ .+|..++++.-   =++
T Consensus       127 ~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-vlppel~~l~l~~~k~v  203 (264)
T KOG0617|consen  127 TTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-VLPPELANLDLVGNKQV  203 (264)
T ss_pred             HHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-ecChhhhhhhhhhhHHH
Confidence            34667788899887 78889999999999999999988 78999999999999999999998 56667777643   356


Q ss_pred             eecccCcccccCC
Q 040113          824 FNVSDNYLTGPIP  836 (887)
Q Consensus       824 L~ls~N~l~g~iP  836 (887)
                      +.+.+|+...+|-
T Consensus       204 ~r~E~NPwv~pIa  216 (264)
T KOG0617|consen  204 MRMEENPWVNPIA  216 (264)
T ss_pred             HhhhhCCCCChHH
Confidence            6777888765553

>PLN03150 hypothetical protein; Provisional

Probab=99.40  E-value=4.5e-13  Score=155.93  Aligned_cols=118  Identities=39%  Similarity=0.703  Sum_probs=106.6

Q ss_pred             ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecc
Q 040113          748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVS  827 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls  827 (887)
                      .++.|+|++|.++|.+|..++.+++|+.|+|++|.++|.+|..++.+++|+.|||++|+++|.+|+.++++++|++|+++
T Consensus       419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCcccccCCCCC--cCccccccccCCCcCCCCCCCCCCCC
Q 040113          828 DNYLTGPIPQGR--QFATFDNSSFESNSGLCGRPLSRECE  865 (887)
Q Consensus       828 ~N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~~~~~c~  865 (887)
                      +|+++|.+|...  .+.......+.||+++||.|-...|.
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l~~C~  538 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGLRACG  538 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCCCCCc
Confidence            999999999752  12233456789999999987656775

>PLN03150 hypothetical protein; Provisional

Probab=99.39  E-value=1.8e-12  Score=150.94  Aligned_cols=125  Identities=34%  Similarity=0.484  Sum_probs=92.6

Q ss_pred             CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCC----ccccceEecCC--C--CcEEEEEcC
Q 040113           38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDC----CSWDGVECSEN--T--GHVMKLDLS  109 (887)
Q Consensus        38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~----c~w~gv~c~~~--~--~~v~~L~L~  109 (887)
                      +.++|.+||+++|+++..+.                  ..+|..    ..|    |.|.||.|...  .  .+|+.|+|+
T Consensus       369 t~~~~~~aL~~~k~~~~~~~------------------~~~W~g----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~  426 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPL------------------RFGWNG----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLD  426 (623)
T ss_pred             cCchHHHHHHHHHHhcCCcc------------------cCCCCC----CCCCCcccccccceeeccCCCCceEEEEEECC
Confidence            45678999999999875432                  136753    233    37999999532  1  258889999


Q ss_pred             CCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCC
Q 040113          110 NSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS  187 (887)
Q Consensus       110 ~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~  187 (887)
                      ++.+.|.++.  .+..+++|++|+|++|.+.+. +|..++.+++|++|+|++|.+.|.+|..++++++|++|+|++|.
T Consensus       427 ~n~L~g~ip~--~i~~L~~L~~L~Ls~N~l~g~-iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~  501 (623)
T PLN03150        427 NQGLRGFIPN--DISKLRHLQSINLSGNSIRGN-IPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNS  501 (623)
T ss_pred             CCCccccCCH--HHhCCCCCCEEECCCCcccCc-CChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCc
Confidence            8888888776  777888888888888887765 77778888888888888888877777777777777777666665

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=8.7e-12  Score=125.39  Aligned_cols=137  Identities=22%  Similarity=0.263  Sum_probs=63.3

Q ss_pred             CCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCCCCCC--ch
Q 040113          252 NLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFP--WS  321 (887)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~--~~  321 (887)
                      .-++|+++..+.|++...    +...|...+.|+.+.++.|.|...    +...+..+++|+.|||.+|.++....  -.
T Consensus       155 ~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~La  234 (382)
T KOG1909|consen  155 SKPKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALA  234 (382)
T ss_pred             CCcceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHH
Confidence            345566666666655422    233445555666666666655321    23345556666666666665542111  11


Q ss_pred             hhccCCCCccEEEccCCCCCCcccccc-----CCCCCccEEEccCCcCCcc----CCccccCCCCCCEEEcCCCCC
Q 040113          322 IVIGNFTQLQSLDFTSNKFSGELHASI-----GNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQNSY  388 (887)
Q Consensus       322 ~~~~~l~~L~~L~L~~n~l~~~~~~~l-----~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l  388 (887)
                      ..+..+++|+.|++++|.+...-...+     ...+.|+.|.+.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       235 kaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  235 KALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence            113344455555555555442221111     1234455555555544422    112223344455555555544

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=7.2e-11  Score=122.08  Aligned_cols=120  Identities=30%  Similarity=0.306  Sum_probs=75.7

Q ss_pred             ccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcC
Q 040113          372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQ  449 (887)
Q Consensus       372 l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~  449 (887)
                      ...+++++.|||+.|-+..-.+.......+|+|+.|+++.|++...........++.++.|.++.|++.  ++-..+..+
T Consensus       142 ~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~f  221 (505)
T KOG3207|consen  142 SKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTF  221 (505)
T ss_pred             hhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhC
Confidence            344666666666666655544444456667777777777776554443333336778888888888887  555667778


Q ss_pred             CcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccc
Q 040113          450 HHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ  493 (887)
Q Consensus       450 ~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~  493 (887)
                      |+|+.|++..|...  ........-+..|+.|+|++|++..++.
T Consensus       222 Psl~~L~L~~N~~~--~~~~~~~~i~~~L~~LdLs~N~li~~~~  263 (505)
T KOG3207|consen  222 PSLEVLYLEANEII--LIKATSTKILQTLQELDLSNNNLIDFDQ  263 (505)
T ss_pred             CcHHHhhhhccccc--ceecchhhhhhHHhhccccCCccccccc
Confidence            89999999988522  1111112225667777777777665553

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=5.3e-11  Score=123.03  Aligned_cols=165  Identities=29%  Similarity=0.305  Sum_probs=68.8

Q ss_pred             HhhcCCCCCEEEccCCCCCCCchhhh-cCCCCCCEEEcccCCCCCc-cccccCCCCCCcEEeCcCCCCCCcchhhccCCC
Q 040113          201 LVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLTFLSLHSCGLQGR-IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLH  278 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  278 (887)
                      ....+++|+.|+++.|++........ ..+++|+.|.++.|.++.. +-..+..+++|+.|+|..|.....-.....-+.
T Consensus       167 i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~  246 (505)
T KOG3207|consen  167 IAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQ  246 (505)
T ss_pred             HHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhh
Confidence            33444444444444444332211111 1234555555555554421 111223445555555555532212122222334


Q ss_pred             CCCEEEccCCCCCCcc-chhhhCCCCCCEEEccCCcCCCCC-Cch---hhccCCCCccEEEccCCCCCCcc-ccccCCCC
Q 040113          279 SLKKLDLSINNLSGEL-PTSIQNLVSLEELDLSFNKLSGEF-PWS---IVIGNFTQLQSLDFTSNKFSGEL-HASIGNLR  352 (887)
Q Consensus       279 ~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~-~~~---~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~  352 (887)
                      .|++|+|++|++.... -...+.++.|+.|+++.+.+...- |+.   .....+++|+.|++..|++...- -..+..++
T Consensus       247 ~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~  326 (505)
T KOG3207|consen  247 TLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLE  326 (505)
T ss_pred             HHhhccccCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccc
Confidence            4555555555544211 122344555555555555544211 100   00233556666666666653211 12233345


Q ss_pred             CccEEEccCCcCC
Q 040113          353 SLEVLAIGRCNFS  365 (887)
Q Consensus       353 ~L~~L~L~~n~i~  365 (887)
                      +|+.|.+..|.+.
T Consensus       327 nlk~l~~~~n~ln  339 (505)
T KOG3207|consen  327 NLKHLRITLNYLN  339 (505)
T ss_pred             hhhhhhccccccc
Confidence            5555555555554

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.02  E-value=3.3e-10  Score=126.43  Aligned_cols=104  Identities=32%  Similarity=0.368  Sum_probs=51.1

Q ss_pred             eEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCC-cccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKES-RLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       552 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      .+++..|.+...+. .+..+. .++.|++.+|.++.+.+ ...... +|+.|++++|++. .+|..+..+++|+.|++++
T Consensus        97 ~l~~~~~~~~~~~~-~~~~~~-~l~~L~l~~n~i~~i~~-~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~  172 (394)
T COG4886          97 SLDLNLNRLRSNIS-ELLELT-NLTSLDLDNNNITDIPP-LIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSF  172 (394)
T ss_pred             eeeccccccccCch-hhhccc-ceeEEecCCcccccCcc-ccccchhhcccccccccchh-hhhhhhhccccccccccCC
Confidence            45566665532222 222223 46666666666654332 233332 5666666666665 3334455555666666666


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGI  660 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  660 (887)
                      |++.... .....++.|+.|++++|++...
T Consensus       173 N~l~~l~-~~~~~~~~L~~L~ls~N~i~~l  201 (394)
T COG4886         173 NDLSDLP-KLLSNLSNLNNLDLSGNKISDL  201 (394)
T ss_pred             chhhhhh-hhhhhhhhhhheeccCCccccC
Confidence            6555542 2222445555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.99  E-value=2.7e-11  Score=128.88  Aligned_cols=192  Identities=32%  Similarity=0.488  Sum_probs=125.1

Q ss_pred             CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113          129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL  208 (887)
Q Consensus       129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L  208 (887)
                      -...||+.|++..  +|..++.+..|..+.|.+|.+ ..+|..++++..|.+||++.                       
T Consensus        77 t~~aDlsrNR~~e--lp~~~~~f~~Le~liLy~n~~-r~ip~~i~~L~~lt~l~ls~-----------------------  130 (722)
T KOG0532|consen   77 TVFADLSRNRFSE--LPEEACAFVSLESLILYHNCI-RTIPEAICNLEALTFLDLSS-----------------------  130 (722)
T ss_pred             hhhhhcccccccc--CchHHHHHHHHHHHHHHhccc-eecchhhhhhhHHHHhhhcc-----------------------
Confidence            3445555555542  455555555555555555544 34444455555555554444                       


Q ss_pred             CEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCC
Q 040113          209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSIN  288 (887)
Q Consensus       209 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n  288 (887)
                             |+++ ..|..++.|+ |+.|-+++|+++ .+|..++...+|..||.+.|.+. .+|..++.+.+|+.|.+..|
T Consensus       131 -------NqlS-~lp~~lC~lp-Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn  199 (722)
T KOG0532|consen  131 -------NQLS-HLPDGLCDLP-LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRN  199 (722)
T ss_pred             -------chhh-cCChhhhcCc-ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhh
Confidence                   4444 2344444443 788888888877 67778888888888888888885 56777888888888888888


Q ss_pred             CCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCC---CCccEEEccCCc
Q 040113          289 NLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL---RSLEVLAIGRCN  363 (887)
Q Consensus       289 ~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~  363 (887)
                      ++. .+|..+..+ .|..||++.|+++ .+|..  |.+++.|++|.|.+|.+. ..|..+...   .-.++|+..-|+
T Consensus       200 ~l~-~lp~El~~L-pLi~lDfScNkis-~iPv~--fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  200 HLE-DLPEELCSL-PLIRLDFSCNKIS-YLPVD--FRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             hhh-hCCHHHhCC-ceeeeecccCcee-ecchh--hhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            887 566666643 6888888888887 77877  888888888888888876 344444322   223566666663

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.97  E-value=8.6e-10  Score=123.15  Aligned_cols=179  Identities=42%  Similarity=0.523  Sum_probs=87.1

Q ss_pred             cccCCCCCeEECCCCCCCCCCCCccccCCC-CCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          123 LFKLVHLEWLNLAFNDFKSSEIPSEIINLS-RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       123 l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~-~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      +..++.++.|++.+|.++.  +|...+.+. +|+.|++++|.+ ..+|..++.+++|+.|++++|++..+       +..
T Consensus       112 ~~~~~~l~~L~l~~n~i~~--i~~~~~~~~~nL~~L~l~~N~i-~~l~~~~~~l~~L~~L~l~~N~l~~l-------~~~  181 (394)
T COG4886         112 LLELTNLTSLDLDNNNITD--IPPLIGLLKSNLKELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLSDL-------PKL  181 (394)
T ss_pred             hhcccceeEEecCCccccc--Cccccccchhhcccccccccch-hhhhhhhhccccccccccCCchhhhh-------hhh
Confidence            3444556666666666653  455555553 666666666655 33444455666666666666653222       222


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      .+..+.|+.|++++|++... |..+.....|++|.+++|... ..+..+.++.++..+.+.+|++.. ++..++.+++++
T Consensus       182 ~~~~~~L~~L~ls~N~i~~l-~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~-~~~~~~~l~~l~  258 (394)
T COG4886         182 LSNLSNLNNLDLSGNKISDL-PPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLED-LPESIGNLSNLE  258 (394)
T ss_pred             hhhhhhhhheeccCCccccC-chhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeee-ccchhccccccc
Confidence            23455555555555555432 222233344555555555322 233344445555555555554431 233444445555


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG  316 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  316 (887)
                      +|++++|.++.. +. ++.+.+++.|++++|.+..
T Consensus       259 ~L~~s~n~i~~i-~~-~~~~~~l~~L~~s~n~~~~  291 (394)
T COG4886         259 TLDLSNNQISSI-SS-LGSLTNLRELDLSGNSLSN  291 (394)
T ss_pred             eecccccccccc-cc-ccccCccCEEeccCccccc
Confidence            555555555422 21 4445555555555555443

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.96  E-value=4.2e-11  Score=127.45  Aligned_cols=194  Identities=26%  Similarity=0.317  Sum_probs=121.7

Q ss_pred             CCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccc
Q 040113          426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFL  505 (887)
Q Consensus       426 ~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L  505 (887)
                      +..-...+++.|.+.++|..+..+..|+.+.++.|.+. .+|..+..  +..|+.++|+.|++...+...+..+     |
T Consensus        74 ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~--L~~lt~l~ls~NqlS~lp~~lC~lp-----L  145 (722)
T KOG0532|consen   74 LTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIR-TIPEAICN--LEALTFLDLSSNQLSHLPDGLCDLP-----L  145 (722)
T ss_pred             ccchhhhhccccccccCchHHHHHHHHHHHHHHhccce-ecchhhhh--hhHHHHhhhccchhhcCChhhhcCc-----c
Confidence            44445667777888888888888888888888888876 56666655  7778888888888888777766655     6


Q ss_pred             cEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113          506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF  585 (887)
Q Consensus       506 ~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l  585 (887)
                      +.|-+++|+++                      .+|..++....|..||.+.|.+. .+|..++++. +|+.|.+..|++
T Consensus       146 kvli~sNNkl~----------------------~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~-slr~l~vrRn~l  201 (722)
T KOG0532|consen  146 KVLIVSNNKLT----------------------SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLT-SLRDLNVRRNHL  201 (722)
T ss_pred             eeEEEecCccc----------------------cCCcccccchhHHHhhhhhhhhh-hchHHhhhHH-HHHHHHHhhhhh
Confidence            66766666665                      34444555556666666666654 4555555555 466666666665


Q ss_pred             cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCcccc---CCCCCCEEEccCC
Q 040113          586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLG---TLPNLTVLILQSN  655 (887)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~---~l~~L~~L~L~~N  655 (887)
                      ... |..+.. -.|..||+++|+++ .+|-.|..++.|++|.|.+|.+..- |..+.   ...-.++|+..-|
T Consensus       202 ~~l-p~El~~-LpLi~lDfScNkis-~iPv~fr~m~~Lq~l~LenNPLqSP-PAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  202 EDL-PEELCS-LPLIRLDFSCNKIS-YLPVDFRKMRHLQVLQLENNPLQSP-PAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             hhC-CHHHhC-CceeeeecccCcee-ecchhhhhhhhheeeeeccCCCCCC-hHHHHhccceeeeeeecchhc
Confidence            432 333332 24566666666666 5566666666666666666666543 32221   2223445555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=98.95  E-value=1.8e-10  Score=116.11  Aligned_cols=205  Identities=23%  Similarity=0.236  Sum_probs=92.0

Q ss_pred             HhhcCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEcccCC---CCCccc-------cccCCCCCCcEEeCcCCCC
Q 040113          201 LVEKLSNLETLDLGYVSIRST----IPHNLANLSSLTFLSLHSCG---LQGRIQ-------SSLGNLSKLLHLDLSLNEL  266 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~---l~~~~~-------~~l~~l~~L~~L~Ls~n~l  266 (887)
                      .+..+..+..+++++|.+...    +...+.+.++|+..++++-.   ....+|       .++..+++|++||||.|-+
T Consensus        25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~  104 (382)
T KOG1909|consen   25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAF  104 (382)
T ss_pred             HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeecccccc
Confidence            334444555555555554322    22334444555555554421   111222       2334566777777777766


Q ss_pred             CCcchhh----ccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113          267 LGELPVS----IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       267 ~~~~p~~----l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  342 (887)
                      ....++.    +.++..|++|+|.+|.+.......++.  .|.+|.  .++         ..+.-+.|+++....|++..
T Consensus       105 G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~--al~~l~--~~k---------k~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen  105 GPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGR--ALFELA--VNK---------KAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHH--HHHHHH--HHh---------ccCCCcceEEEEeecccccc
Confidence            5443332    345666777777777664222222211  011111  000         02223445555555554432


Q ss_pred             c----cccccCCCCCccEEEccCCcCCcc----CCccccCCCCCCEEEcCCCCCcc--ccchhhhhcCCCCCCEEEccCC
Q 040113          343 E----LHASIGNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQNSYRG--TMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       343 ~----~~~~l~~l~~L~~L~L~~n~i~~~----~~~~l~~l~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      .    +...|...+.|+.+.+..|.|...    +...+..+++|++|||.+|.++.  .......+..++.|+.|++++|
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dc  251 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDC  251 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeeccccc
Confidence            1    122334445555555555544321    12334455555555555555432  2222233445555555555555


Q ss_pred             cccccc
Q 040113          413 WLSLLT  418 (887)
Q Consensus       413 ~i~~~~  418 (887)
                      .+..-+
T Consensus       252 ll~~~G  257 (382)
T KOG1909|consen  252 LLENEG  257 (382)
T ss_pred             cccccc
Confidence            444333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.89  E-value=4.4e-10  Score=110.32  Aligned_cols=200  Identities=22%  Similarity=0.172  Sum_probs=127.6

Q ss_pred             CCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccC---ccccccCChhhhCcCCCC
Q 040113          475 TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSN---NSFIGEIPSWLCKLDSLE  551 (887)
Q Consensus       475 ~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~---n~~~~~~~~~~~~l~~L~  551 (887)
                      +.+|+++.++++.-..+.....    ..+.|+++.+.+..++......+ .-...|.+.   .-..|..-..+.....|+
T Consensus       213 f~~l~~~~~s~~~~~~i~~~~~----~kptl~t~~v~~s~~~~~~~l~p-e~~~~D~~~~E~~t~~G~~~~~~dTWq~Lt  287 (490)
T KOG1259|consen  213 FRNLKTLKFSALSTENIVDIEL----LKPTLQTICVHNTTIQDVPSLLP-ETILADPSGSEPSTSNGSALVSADTWQELT  287 (490)
T ss_pred             hhhhheeeeeccchhheeceee----cCchhheeeeecccccccccccc-hhhhcCccCCCCCccCCceEEecchHhhhh
Confidence            5677777777765544433221    22336666665554443211111 111111111   111222222233346788


Q ss_pred             eEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCC
Q 040113          552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN  631 (887)
Q Consensus       552 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N  631 (887)
                      ++|||+|.|+ .+.+...-.| .++.|++++|.|....  .+..+++|+.||||+|.++. ...+=..+-+.+.|.|+.|
T Consensus       288 elDLS~N~I~-~iDESvKL~P-kir~L~lS~N~i~~v~--nLa~L~~L~~LDLS~N~Ls~-~~Gwh~KLGNIKtL~La~N  362 (490)
T KOG1259|consen  288 ELDLSGNLIT-QIDESVKLAP-KLRRLILSQNRIRTVQ--NLAELPQLQLLDLSGNLLAE-CVGWHLKLGNIKTLKLAQN  362 (490)
T ss_pred             hccccccchh-hhhhhhhhcc-ceeEEeccccceeeeh--hhhhcccceEeecccchhHh-hhhhHhhhcCEeeeehhhh
Confidence            9999999887 4555554455 7999999999987553  37788899999999998884 3344456778889999999


Q ss_pred             cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccC
Q 040113          632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL  687 (887)
Q Consensus       632 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i  687 (887)
                      .|...  ..++++-+|..||+++|++...-.. ...++++-|+.+.|-+|++.+..
T Consensus       363 ~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV-~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  363 KIETL--SGLRKLYSLVNLDLSSNQIEELDEV-NHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hHhhh--hhhHhhhhheeccccccchhhHHHh-cccccccHHHHHhhcCCCccccc
Confidence            88776  5678888899999999998654221 22367888999999999988543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.87  E-value=1.7e-09  Score=128.67  Aligned_cols=179  Identities=27%  Similarity=0.261  Sum_probs=101.2

Q ss_pred             CCCCCeEECCCCC--CCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113          126 LVHLEWLNLAFND--FKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE  203 (887)
Q Consensus       126 l~~L~~L~L~~n~--~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~  203 (887)
                      .+.|+.|-+..|.  +... -+..|..++.|++|||++|.-.+.+|..|++|.+||+|++++..+       ..+|..++
T Consensus       544 ~~~L~tLll~~n~~~l~~i-s~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I-------~~LP~~l~  615 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLEI-SGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI-------SHLPSGLG  615 (889)
T ss_pred             CCccceEEEeecchhhhhc-CHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc-------cccchHHH
Confidence            3456677666664  3321 233466777777777777766677777777777777777777763       34567777


Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCC--CCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCG--LQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~--l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +++.|.+|++..+.....+|.....+++|++|.+....  .+...-..+.++.+|+.+.......  .+-..+..++.|.
T Consensus       616 ~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLEDLLGMTRLR  693 (889)
T ss_pred             HHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHhhhhhhHHHH
Confidence            77777777777776555556666667777777776553  1222223344455555554433221  1111122222222


Q ss_pred             ----EEEccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113          282 ----KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       282 ----~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                          .+.+.++... ..+..+..+.+|+.|.+.++...
T Consensus       694 ~~~~~l~~~~~~~~-~~~~~~~~l~~L~~L~i~~~~~~  730 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKR-TLISSLGSLGNLEELSILDCGIS  730 (889)
T ss_pred             HHhHhhhhcccccc-eeecccccccCcceEEEEcCCCc
Confidence                2222222222 33444566667777777666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.86  E-value=5.6e-10  Score=109.58  Aligned_cols=140  Identities=26%  Similarity=0.295  Sum_probs=90.9

Q ss_pred             ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhc
Q 040113          245 RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI  324 (887)
Q Consensus       245 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~  324 (887)
                      ..-..+...+.|+.+||++|.|+ .+-+++.-.++++.|++++|.+...  +.++.+++|+.|||++|.++....+   -
T Consensus       275 ~~~~~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~~Gw---h  348 (490)
T KOG1259|consen  275 SALVSADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAECVGW---H  348 (490)
T ss_pred             ceEEecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhhhhh---H
Confidence            33334445667788888888775 4556666677888888888887633  3377778888888888877643333   2


Q ss_pred             cCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCcc-CCccccCCCCCCEEEcCCCCCcccc
Q 040113          325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTM  392 (887)
Q Consensus       325 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~  392 (887)
                      .++-++++|.|+.|.+.  .-..++.+-+|..|++++|+|... -...++++|.|+.+.+.+|.+.+..
T Consensus       349 ~KLGNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  349 LKLGNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             hhhcCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            34557777777777764  233455666777777777776532 1234666777777777777666544

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.85  E-value=2e-09  Score=102.28  Aligned_cols=106  Identities=33%  Similarity=0.392  Sum_probs=26.5

Q ss_pred             CCCCEEEcccCCCCCccccccC-CCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhh-hCCCCCCEE
Q 040113          230 SSLTFLSLHSCGLQGRIQSSLG-NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEEL  307 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~~~~l~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L  307 (887)
                      .++++|+|++|.+...  +.++ .+.+|+.|++++|.+...  +.+..+++|++|++++|.++. +.+.+ ..+++|++|
T Consensus        19 ~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~~L   93 (175)
T PF14580_consen   19 VKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQEL   93 (175)
T ss_dssp             -------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--EE
T ss_pred             cccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCCEE
Confidence            3455555555555422  2233 345566666666655432  245555666666666666653 22223 345666666


Q ss_pred             EccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113          308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS  341 (887)
Q Consensus       308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  341 (887)
                      ++++|++.. +..-..++.+++|+.|++.+|.++
T Consensus        94 ~L~~N~I~~-l~~l~~L~~l~~L~~L~L~~NPv~  126 (175)
T PF14580_consen   94 YLSNNKISD-LNELEPLSSLPKLRVLSLEGNPVC  126 (175)
T ss_dssp             E-TTS---S-CCCCGGGGG-TT--EEE-TT-GGG
T ss_pred             ECcCCcCCC-hHHhHHHHcCCCcceeeccCCccc
Confidence            666666542 221122445555555555555543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.80  E-value=4.2e-09  Score=100.18  Aligned_cols=85  Identities=25%  Similarity=0.306  Sum_probs=27.5

Q ss_pred             cCCCCccEEEccCCCCCCcccccc-CCCCCccEEEccCCcCCcc-CCccccCCCCCCEEEcCCCCCcccc-chhhhhcCC
Q 040113          325 GNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTM-ELDFLLVSL  401 (887)
Q Consensus       325 ~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~i~~~-~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~l~~l  401 (887)
                      ..++.|+.|++++|.++.. ...+ ..+++|++|++++|++... .-..+..+++|++|++.+|++.... ...+.+..+
T Consensus        61 ~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~l  139 (175)
T PF14580_consen   61 PGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKL  139 (175)
T ss_dssp             ---TT--EEE--SS---S--CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-
T ss_pred             cChhhhhhcccCCCCCCcc-ccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHc
Confidence            3344444444444444422 1111 2344455555555544321 1123445566666666666654332 123346667


Q ss_pred             CCCCEEEcc
Q 040113          402 KNLEVLSLS  410 (887)
Q Consensus       402 ~~L~~L~L~  410 (887)
                      |+|+.||-.
T Consensus       140 P~Lk~LD~~  148 (175)
T PF14580_consen  140 PSLKVLDGQ  148 (175)
T ss_dssp             TT-SEETTE
T ss_pred             ChhheeCCE
Confidence            777776543

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.78  E-value=4.5e-09  Score=81.96  Aligned_cols=60  Identities=42%  Similarity=0.636  Sum_probs=32.8

Q ss_pred             CCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcc
Q 040113          772 GLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYL  831 (887)
Q Consensus       772 ~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l  831 (887)
                      +|++|++++|+++...++.|.++++|++|++++|+++...|..|.++++|++|++++|+|
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            345555555555544445555555555555555555555555555555555555555543

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=6.5e-09  Score=81.07  Aligned_cols=61  Identities=46%  Similarity=0.638  Sum_probs=57.3

Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcc
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF  807 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l  807 (887)
                      ++|+.|++++|+++...+..|.++++|++|++++|.++...|+.|.++++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            4689999999999977778999999999999999999999999999999999999999986

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.71  E-value=1.9e-09  Score=120.47  Aligned_cols=246  Identities=24%  Similarity=0.237  Sum_probs=165.6

Q ss_pred             CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113          546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF  625 (887)
Q Consensus       546 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  625 (887)
                      .+..++.+.+..|.+.. +-..+..+. +|+.|++.+|+|.++.. .+..+++|++|++++|+|+...  .+..++.|+.
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~-~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~~  144 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLK-SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLKE  144 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhccccccc-ceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchhh
Confidence            35566777788887763 333455566 68899999998876543 2667888999999999998664  3666777999


Q ss_pred             EeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCC
Q 040113          626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSD  705 (887)
Q Consensus       626 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~  705 (887)
                      |++++|.|...  ..+..++.|+.+++++|++..+-+..  ...+.+++.+++++|.+...-.......   +..+...+
T Consensus       145 L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~--~~~~~~l~~l~l~~n~i~~i~~~~~~~~---l~~~~l~~  217 (414)
T KOG0531|consen  145 LNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE--LSELISLEELDLGGNSIREIEGLDLLKK---LVLLSLLD  217 (414)
T ss_pred             heeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh--hhhccchHHHhccCCchhcccchHHHHH---HHHhhccc
Confidence            99999999877  56777889999999999988764410  1457888899999998863222221111   11111110


Q ss_pred             ccccccccCCccccccccccccccceeeeecccccccccc--CC--ceeEEEeecCcCCccChhhhhcccCCCEEeCCCC
Q 040113          706 LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV--PD--ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNN  781 (887)
Q Consensus       706 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N  781 (887)
                      ....                               ....+  ..  +|+.+++++|++. .++..+..+..+..|++++|
T Consensus       218 n~i~-------------------------------~~~~l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n  265 (414)
T KOG0531|consen  218 NKIS-------------------------------KLEGLNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSN  265 (414)
T ss_pred             ccce-------------------------------eccCcccchhHHHHHHhcccCccc-cccccccccccccccchhhc
Confidence            0000                               00000  11  3788899999987 44466778888999999999


Q ss_pred             cccccCCccccCCCCCCEEeCCCCccccc---CCcc-ccCCCCCCeeecccCcccccCCC
Q 040113          782 NLQGHIPSCLGNLTNLESLDLSNNNFLGQ---IPQQ-LVELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       782 ~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~---~p~~-l~~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      ++...  ..+.....+..+....|.+...   .... ......+..+.+.+|......+.
T Consensus       266 ~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  323 (414)
T KOG0531|consen  266 RISNL--EGLERLPKLSELWLNDNKLALSEAISQEYITSAAPTLVTLTLELNPIRKISSL  323 (414)
T ss_pred             ccccc--ccccccchHHHhccCcchhcchhhhhccccccccccccccccccCcccccccc
Confidence            88765  3356667788888888887622   2221 45667788888999988876653

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.67  E-value=2.4e-08  Score=118.95  Aligned_cols=85  Identities=34%  Similarity=0.497  Sum_probs=39.3

Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      |..++.|+.|||++|.--+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|++..+.....+|.....+.+|+
T Consensus       567 f~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr  645 (889)
T KOG4658|consen  567 FRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLR  645 (889)
T ss_pred             HhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhccccc
Confidence            444555555555554444444444444445555544444444 3444444444444444444433333333333344444


Q ss_pred             EEEccC
Q 040113          282 KLDLSI  287 (887)
Q Consensus       282 ~L~L~~  287 (887)
                      +|.+..
T Consensus       646 ~L~l~~  651 (889)
T KOG4658|consen  646 VLRLPR  651 (889)
T ss_pred             EEEeec
Confidence            444433

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.66  E-value=3.1e-09  Score=118.72  Aligned_cols=171  Identities=30%  Similarity=0.334  Sum_probs=78.1

Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcch-hhccCCCCCCE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELP-VSIGNLHSLKK  282 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~  282 (887)
                      .+++|++|++++|.++...+  +..++.|+.|++++|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.
T Consensus       116 ~~~~L~~L~ls~N~I~~i~~--l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~  190 (414)
T KOG0531|consen  116 SLVNLQVLDLSFNKITKLEG--LSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEE  190 (414)
T ss_pred             hhhcchheeccccccccccc--hhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHH
Confidence            33444444444444433322  33444455555555555422  233345566666666666543322 1 345556666


Q ss_pred             EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCC--ccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113          283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ--LQSLDFTSNKFSGELHASIGNLRSLEVLAIG  360 (887)
Q Consensus       283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~--L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  360 (887)
                      +++.+|.+...  ..+..+..+..+++..|.++..-+    +..+..  |+.+++++|++.. .+..+..+..+..|++.
T Consensus       191 l~l~~n~i~~i--~~~~~~~~l~~~~l~~n~i~~~~~----l~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~  263 (414)
T KOG0531|consen  191 LDLGGNSIREI--EGLDLLKKLVLLSLLDNKISKLEG----LNELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLS  263 (414)
T ss_pred             HhccCCchhcc--cchHHHHHHHHhhcccccceeccC----cccchhHHHHHHhcccCcccc-ccccccccccccccchh
Confidence            66666655422  223333344444555555542221    112222  5566666665542 22344445555555655


Q ss_pred             CCcCCccCCccccCCCCCCEEEcCCCCC
Q 040113          361 RCNFSGRIPSSLRNLTQLITLDLSQNSY  388 (887)
Q Consensus       361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l  388 (887)
                      .|++...  ..+.....+..+....+.+
T Consensus       264 ~n~~~~~--~~~~~~~~~~~~~~~~~~~  289 (414)
T KOG0531|consen  264 SNRISNL--EGLERLPKLSELWLNDNKL  289 (414)
T ss_pred             hcccccc--ccccccchHHHhccCcchh
Confidence            5555422  1222333444444444443

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.59  E-value=1.5e-09  Score=106.81  Aligned_cols=184  Identities=23%  Similarity=0.219  Sum_probs=86.5

Q ss_pred             CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113          129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL  208 (887)
Q Consensus       129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L  208 (887)
                      |++|||+...|+...+...+..|.+|+.|.|.++++.+.+-..+.+-.+|+.|+++.+...    ......-.+..++.|
T Consensus       187 lq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~----t~n~~~ll~~scs~L  262 (419)
T KOG2120|consen  187 LQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGF----TENALQLLLSSCSRL  262 (419)
T ss_pred             hHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeecccccccc----chhHHHHHHHhhhhH
Confidence            5666666666554333334555666666666666665555555666666666666655411    111223344555555


Q ss_pred             CEEEccCCCCCCCchhhh-cC-CCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113          209 ETLDLGYVSIRSTIPHNL-AN-LSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       209 ~~L~L~~n~~~~~~~~~l-~~-l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  286 (887)
                      ..|++++|.........+ .. -++|+.|++++++-.                     -....+..-...+++|..|||+
T Consensus       263 ~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrn---------------------l~~sh~~tL~~rcp~l~~LDLS  321 (419)
T KOG2120|consen  263 DELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRN---------------------LQKSHLSTLVRRCPNLVHLDLS  321 (419)
T ss_pred             hhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhh---------------------hhhhHHHHHHHhCCceeeeccc
Confidence            555555555433222111 11 134444444444310                     0001122222345555555555


Q ss_pred             CCC-CCCccchhhhCCCCCCEEEccCCcCCCCCCchh-hccCCCCccEEEccCCC
Q 040113          287 INN-LSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI-VIGNFTQLQSLDFTSNK  339 (887)
Q Consensus       287 ~n~-l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~-~~~~l~~L~~L~L~~n~  339 (887)
                      +|. ++......|.+++.|++|.++.|..  .+|... .+...+.|.+|++.++-
T Consensus       322 D~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~v  374 (419)
T KOG2120|consen  322 DSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGCV  374 (419)
T ss_pred             cccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEecccc
Confidence            543 2223334455556666666665542  222211 14455666666665553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.53  E-value=1.1e-07  Score=67.62  Aligned_cols=42  Identities=40%  Similarity=0.818  Sum_probs=29.6

Q ss_pred             HHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEec
Q 040113           40 DDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECS   97 (887)
Q Consensus        40 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~   97 (887)
                      ++|++||++||+++..++.               ..+.+|+... ..+||+|.||+|+
T Consensus         2 ~~d~~aLl~~k~~l~~~~~---------------~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    2 NQDRQALLAFKKSLNNDPS---------------GVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             HHHHHHHHHHHHCTT-SC----------------CCCTT--TT---S-CCCSTTEEE-
T ss_pred             cHHHHHHHHHHHhcccccC---------------cccccCCCcC-CCCCeeeccEEeC
Confidence            5799999999999986443               2799999731 2799999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.37  E-value=2.3e-08  Score=98.54  Aligned_cols=158  Identities=22%  Similarity=0.239  Sum_probs=90.8

Q ss_pred             CCcEEeCcCCCCCCc-chhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEE
Q 040113          255 KLLHLDLSLNELLGE-LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL  333 (887)
Q Consensus       255 ~L~~L~Ls~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L  333 (887)
                      +|+++||+...++.. +-..+..+.+|+.|.+.++++...+...+++-.+|+.|+++.+.--........+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            577777777666532 2233456677777777777777777777777777777777765422233333346667777777


Q ss_pred             EccCCCCCCccccc-cCC-CCCccEEEccCCcCC---ccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEE
Q 040113          334 DFTSNKFSGELHAS-IGN-LRSLEVLAIGRCNFS---GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLS  408 (887)
Q Consensus       334 ~L~~n~l~~~~~~~-l~~-l~~L~~L~L~~n~i~---~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  408 (887)
                      +++.|.+....... +.. -++|+.|+++++.-.   ..+..-...+++|.+|||++|..... .....+..++.|++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~-~~~~~~~kf~~L~~lS  344 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN-DCFQEFFKFNYLQHLS  344 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc-hHHHHHHhcchheeee
Confidence            77777665332211 111 245667777665311   11112234567777777777643322 1112356677777777


Q ss_pred             ccCCc
Q 040113          409 LSSNW  413 (887)
Q Consensus       409 L~~n~  413 (887)
                      ++.|+
T Consensus       345 lsRCY  349 (419)
T KOG2120|consen  345 LSRCY  349 (419)
T ss_pred             hhhhc
Confidence            77774

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.24  E-value=6.2e-08  Score=84.53  Aligned_cols=87  Identities=29%  Similarity=0.418  Sum_probs=52.0

Q ss_pred             ceeEEEeecCcCCccChhhhh-cccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113          748 ILTSIILSSNRFDGMIPTSIA-NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV  826 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip~~l~-~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l  826 (887)
                      .|+.++|++|.+. ..|..|. ..+.++.|||++|.++ .+|..+..++.|+.|+++.|.+. ..|+.+..|.+|-+|+.
T Consensus        54 el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcC
Confidence            3556666666666 3333333 3346666666666666 45555666667777777777666 34555555666666666


Q ss_pred             ccCcccccCCCC
Q 040113          827 SDNYLTGPIPQG  838 (887)
Q Consensus       827 s~N~l~g~iP~~  838 (887)
                      .+|.+. +||..
T Consensus       131 ~~na~~-eid~d  141 (177)
T KOG4579|consen  131 PENARA-EIDVD  141 (177)
T ss_pred             CCCccc-cCcHH
Confidence            666554 55544

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.22  E-value=3.4e-08  Score=102.10  Aligned_cols=299  Identities=20%  Similarity=0.155  Sum_probs=140.9

Q ss_pred             CCCeEECCCCCCCCC-CCCccccCCCCCCEEECCCCCC-CccCCcccc-CCCCCcEEEccCCCCCCccccCCChHHHhhc
Q 040113          128 HLEWLNLAFNDFKSS-EIPSEIINLSRLSYLNLSHSSF-FGQIPSEIL-ELVNLVSLDLSLNSGYGLELQKPNFANLVEK  204 (887)
Q Consensus       128 ~L~~L~L~~n~~~~~-~lp~~~~~l~~L~~L~Ls~n~~-~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~  204 (887)
                      .|+.|.++++.-.+. .+-..-.+++++++|++.+|.. +...-..++ .+++|++|++..+.    .+....+......
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~----~iT~~~Lk~la~g  214 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCS----SITDVSLKYLAEG  214 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccc----hhHHHHHHHHHHh
Confidence            355555555542211 1112233555566665555532 211112222 35666666665532    1111122233445


Q ss_pred             CCCCCEEEccCCC-CCCC-chhhhcCCCCCCEEEcccCCCCCcccccc----CCCCCCcEEeCcCCCC-CCcc-hhhccC
Q 040113          205 LSNLETLDLGYVS-IRST-IPHNLANLSSLTFLSLHSCGLQGRIQSSL----GNLSKLLHLDLSLNEL-LGEL-PVSIGN  276 (887)
Q Consensus       205 l~~L~~L~L~~n~-~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l~~L~~L~Ls~n~l-~~~~-p~~l~~  276 (887)
                      +++|++|+++++. +++. +.....++..++.+.+.+|.-.+  .+.+    +.+..+..+++..+.. +..- -..-..
T Consensus       215 C~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~--le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~  292 (483)
T KOG4341|consen  215 CRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELE--LEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACG  292 (483)
T ss_pred             hhhHHHhhhccCchhhcCcchHHhccchhhhhhhhccccccc--HHHHHHHhccChHhhccchhhhccccchHHHHHhhh
Confidence            6666666666654 2321 11223344555555555443111  1111    2334444555444422 2211 111134


Q ss_pred             CCCCCEEEccCCCCCCc-cchhh-hCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC--CccccccCCCC
Q 040113          277 LHSLKKLDLSINNLSGE-LPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS--GELHASIGNLR  352 (887)
Q Consensus       277 l~~L~~L~L~~n~l~~~-~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~--~~~~~~l~~l~  352 (887)
                      +..|++|..+++.-.+. .-..+ .++++|+.|.++.++.-+..-....-.+.+.|+.+++..+...  +.+...-.+++
T Consensus       293 c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~  372 (483)
T KOG4341|consen  293 CHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCP  372 (483)
T ss_pred             hhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCc
Confidence            55666776666543222 22222 3456777777777663323322222345666777777766532  11223334567


Q ss_pred             CccEEEccCCcCCccC-----CccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCc-ccccccccCCCCC
Q 040113          353 SLEVLAIGRCNFSGRI-----PSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW-LSLLTKVTSNTTS  426 (887)
Q Consensus       353 ~L~~L~L~~n~i~~~~-----~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~-i~~~~~~~~~~~~  426 (887)
                      .|+.+.+++|......     ...-..+..|..+.+++++........ .+..+++|+.+++.++. ++..+...+...+
T Consensus       373 ~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le-~l~~c~~Leri~l~~~q~vtk~~i~~~~~~l  451 (483)
T KOG4341|consen  373 RLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE-HLSICRNLERIELIDCQDVTKEAISRFATHL  451 (483)
T ss_pred             hhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH-HHhhCcccceeeeechhhhhhhhhHHHHhhC
Confidence            7777777776433221     112234567778888888766544433 36777888888887774 2222222333345


Q ss_pred             CCeeEEe
Q 040113          427 QKFTVVG  433 (887)
Q Consensus       427 ~~L~~l~  433 (887)
                      +++++.-
T Consensus       452 p~i~v~a  458 (483)
T KOG4341|consen  452 PNIKVHA  458 (483)
T ss_pred             ccceehh
Confidence            5555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.21  E-value=4e-07  Score=89.94  Aligned_cols=86  Identities=27%  Similarity=0.261  Sum_probs=46.3

Q ss_pred             CCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcCCc
Q 040113          374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQHH  451 (887)
Q Consensus       374 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~  451 (887)
                      ..+.++.+||.+|.++.-......+.++|.|+.|+++.|.+...-.... ....+|+.+-+.+..+.  .....+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp-~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLP-LPLKNLRVLVLNGTGLSWTQSTSSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCc-ccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence            3566777777777776544444456777777777777775432211110 23445555555555443  33334444444


Q ss_pred             ccEEecccC
Q 040113          452 LMLLDLSSN  460 (887)
Q Consensus       452 L~~L~Ls~n  460 (887)
                      +++|.++.|
T Consensus       148 vtelHmS~N  156 (418)
T KOG2982|consen  148 VTELHMSDN  156 (418)
T ss_pred             hhhhhhccc
Confidence            455444444

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.19  E-value=3.4e-08  Score=108.48  Aligned_cols=125  Identities=33%  Similarity=0.347  Sum_probs=63.1

Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchh-hccCCCCCCEEEcc
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPV-SIGNLHSLKKLDLS  286 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~L~~L~L~  286 (887)
                      |.+.+.++|.+. .+..++.-++.|+.|+|++|+++..  ..+..+++|++|||++|.+. .+|. ....+ +|+.|.++
T Consensus       166 L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lr  240 (1096)
T KOG1859|consen  166 LATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLR  240 (1096)
T ss_pred             HhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeec
Confidence            334444444443 1223344455566666666665533  24555666666666666654 2222 11222 26666666


Q ss_pred             CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113          287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF  340 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  340 (887)
                      +|.++..  ..+.++.+|+.||+++|-+.+.- .-..+..+..|+.|.|.+|.+
T Consensus       241 nN~l~tL--~gie~LksL~~LDlsyNll~~hs-eL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  241 NNALTTL--RGIENLKSLYGLDLSYNLLSEHS-ELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             ccHHHhh--hhHHhhhhhhccchhHhhhhcch-hhhHHHHHHHHHHHhhcCCcc
Confidence            6665422  33556666666666666555321 111244455666666666654

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.13  E-value=1.9e-06  Score=85.31  Aligned_cols=192  Identities=18%  Similarity=0.183  Sum_probs=90.0

Q ss_pred             CCCCCcEEeCcCCCCCC--cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCC
Q 040113          252 NLSKLLHLDLSLNELLG--ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQ  329 (887)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~  329 (887)
                      .++.++.+||.+|.++.  .+..-+.+++.|++|+++.|++...+-..-....+|+.|.|.+..+.-.-.. ..+..+|.
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~-s~l~~lP~  147 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQST-SSLDDLPK  147 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhh-hhhhcchh
Confidence            34556666666666542  2223344555666666666655433221112344555555555444321111 11334444


Q ss_pred             ccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEc
Q 040113          330 LQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSL  409 (887)
Q Consensus       330 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L  409 (887)
                      ++.|.++.|.+..              +.+..+.+..       .-+.+++|.+-.|...--..........|++..+-+
T Consensus       148 vtelHmS~N~~rq--------------~n~Dd~c~e~-------~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v  206 (418)
T KOG2982|consen  148 VTELHMSDNSLRQ--------------LNLDDNCIED-------WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFV  206 (418)
T ss_pred             hhhhhhccchhhh--------------hccccccccc-------cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheee
Confidence            5555555443211              1111111100       012334444434332211111112334556666666


Q ss_pred             cCCcccccccccCCCCCCCeeEEeeCCCCCcccC--hhhhcCCcccEEecccCcccCC
Q 040113          410 SSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP--NFLKNQHHLMLLDLSSNRIHGK  465 (887)
Q Consensus       410 ~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~--~~l~~~~~L~~L~Ls~n~l~~~  465 (887)
                      ..|++...........++.+..|++..+++..+.  +.+..+++|..|.++++.+.+.
T Consensus       207 ~e~PlK~~s~ek~se~~p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~  264 (418)
T KOG2982|consen  207 CEGPLKTESSEKGSEPFPSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDP  264 (418)
T ss_pred             ecCcccchhhcccCCCCCcchhhhhcccccccHHHHHHHcCCchhheeeccCCccccc
Confidence            6666655555444445556666666666665332  4567778888888888776543

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.12  E-value=8.1e-07  Score=86.70  Aligned_cols=115  Identities=23%  Similarity=0.246  Sum_probs=59.8

Q ss_pred             HhhcCCCCCEEEccCCCCCCCchhh----hcCCCCCCEEEcccCCCCCc----ccc---------ccCCCCCCcEEeCcC
Q 040113          201 LVEKLSNLETLDLGYVSIRSTIPHN----LANLSSLTFLSLHSCGLQGR----IQS---------SLGNLSKLLHLDLSL  263 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n~~~~~~~~~----l~~l~~L~~L~L~~n~l~~~----~~~---------~l~~l~~L~~L~Ls~  263 (887)
                      .+.+|++|+..+|+.|.+....|..    +++-+.|++|.+++|.+.-.    +..         ...+-+.|++.....
T Consensus        87 aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgr  166 (388)
T COG5238          87 ALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGR  166 (388)
T ss_pred             HHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEecc
Confidence            4455666666666666665544433    34456666777766655321    111         123446666776666


Q ss_pred             CCCCCc----chhhccCCCCCCEEEccCCCCCCc-----cchhhhCCCCCCEEEccCCcCC
Q 040113          264 NELLGE----LPVSIGNLHSLKKLDLSINNLSGE-----LPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       264 n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      |++..-    ....+..-..|+++.+.+|.|...     +-..+..+.+|+.||+.+|.++
T Consensus       167 NRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft  227 (388)
T COG5238         167 NRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFT  227 (388)
T ss_pred             chhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchh
Confidence            665421    111233335666666666665422     1112344556666666666654

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.06  E-value=8.6e-08  Score=105.36  Aligned_cols=196  Identities=23%  Similarity=0.246  Sum_probs=99.6

Q ss_pred             CCCCEEEcccCCCCCcc-ccccCCCCCCcEEeCcCCCCCCcchhhccCC-CCCCEEEccCCCCCCccchhhhC-------
Q 040113          230 SSLTFLSLHSCGLQGRI-QSSLGNLSKLLHLDLSLNELLGELPVSIGNL-HSLKKLDLSINNLSGELPTSIQN-------  300 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l-~~L~~L~L~~n~l~~~~~~~l~~-------  300 (887)
                      ++++.|.+-.-.-.+.. |-.+..+.+|++|.+.++.+..  ...+..+ ..|++|.-.+ .++ .+-+.|+.       
T Consensus        84 qkt~~lkl~~~pa~~pt~pi~ifpF~sLr~LElrg~~L~~--~~GL~~lr~qLe~LIC~~-Sl~-Al~~v~ascggd~~n  159 (1096)
T KOG1859|consen   84 QKTKVLKLLPSPARDPTEPISIFPFRSLRVLELRGCDLST--AKGLQELRHQLEKLICHN-SLD-ALRHVFASCGGDISN  159 (1096)
T ss_pred             hhheeeeecccCCCCCCCCceeccccceeeEEecCcchhh--hhhhHHHHHhhhhhhhhc-cHH-HHHHHHHHhcccccc
Confidence            44555554433322222 5567788999999999988753  1111111 1233332111 110 00000100       


Q ss_pred             ---CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCc-cccCCC
Q 040113          301 ---LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLT  376 (887)
Q Consensus       301 ---l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~-~l~~l~  376 (887)
                         --.|...+.++|.+. .+...  +.-++.|+.|+|++|+++..  +.+..++.|++|||+.|.+.. +|. ....+ 
T Consensus       160 s~~Wn~L~~a~fsyN~L~-~mD~S--Lqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc-  232 (1096)
T KOG1859|consen  160 SPVWNKLATASFSYNRLV-LMDES--LQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRH-VPQLSMVGC-  232 (1096)
T ss_pred             chhhhhHhhhhcchhhHH-hHHHH--HHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhcc-ccccchhhh-
Confidence               113555555666554 33333  44456666666666666532  255566666666666666652 222 12223 


Q ss_pred             CCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113          377 QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI  440 (887)
Q Consensus       377 ~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~  440 (887)
                      .|+.|.+++|.++....    +.++++|+.||+++|-+.....+.+.+.+..|+.|.+.+|.+.
T Consensus       233 ~L~~L~lrnN~l~tL~g----ie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  233 KLQLLNLRNNALTTLRG----IENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             hheeeeecccHHHhhhh----HHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            26666666666554332    4566666666666666655555555555555666666665544

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.04  E-value=1.4e-06  Score=85.00  Aligned_cols=249  Identities=19%  Similarity=0.153  Sum_probs=117.8

Q ss_pred             CcEEEEEcCCCcccccccC--CcccccCCCCCeEECCCCCCCCC--CCC-------ccccCCCCCCEEECCCCCCCccCC
Q 040113          101 GHVMKLDLSNSCLYGSINS--SSSLFKLVHLEWLNLAFNDFKSS--EIP-------SEIINLSRLSYLNLSHSSFFGQIP  169 (887)
Q Consensus       101 ~~v~~L~L~~~~l~~~~~~--~~~l~~l~~L~~L~L~~n~~~~~--~lp-------~~~~~l~~L~~L~Ls~n~~~~~~p  169 (887)
                      ..++.++||+|.+......  ...+.+-++|+..+++.-.....  .++       +.+-+|++|+..+||.|.|....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            4678888998887543321  11344556777777775322110  122       235577888888888887766666


Q ss_pred             ccc----cCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCc
Q 040113          170 SEI----LELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR  245 (887)
Q Consensus       170 ~~l----~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  245 (887)
                      ..+    +.-+.|+||.+++|.+.-+.  .+.+...+..+..               .....+-|.|++.....|++..-
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~a--G~rigkal~~la~---------------nKKaa~kp~Le~vicgrNRleng  172 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIA--GGRIGKALFHLAY---------------NKKAADKPKLEVVICGRNRLENG  172 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccc--hhHHHHHHHHHHH---------------HhhhccCCCceEEEeccchhccC
Confidence            433    44566777777776532211  1222222111100               00112234444544444443311


Q ss_pred             c----ccccCCCCCCcEEeCcCCCCCCc-----chhhccCCCCCCEEEccCCCCCCccc----hhhhCCCCCCEEEccCC
Q 040113          246 I----QSSLGNLSKLLHLDLSLNELLGE-----LPVSIGNLHSLKKLDLSINNLSGELP----TSIQNLVSLEELDLSFN  312 (887)
Q Consensus       246 ~----~~~l~~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~L~~n  312 (887)
                      .    ...+..-..|+.+.+..|.|...     +-..+..+.+|++|++++|.++....    ..+..-+.|++|.+.+|
T Consensus       173 s~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDC  252 (388)
T COG5238         173 SKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC  252 (388)
T ss_pred             cHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccch
Confidence            0    01122223455555555544321     11122334555566666655543222    22233344566666666


Q ss_pred             cCCCCCCchhh----ccCCCCccEEEccCCCCCCccccc-------cCCCCCccEEEccCCcCCc
Q 040113          313 KLSGEFPWSIV----IGNFTQLQSLDFTSNKFSGELHAS-------IGNLRSLEVLAIGRCNFSG  366 (887)
Q Consensus       313 ~l~~~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~~~-------l~~l~~L~~L~L~~n~i~~  366 (887)
                      -++..-.....    -...++|..|-..+|...+.+...       -..+|-|..|.+.+|++..
T Consensus       253 lls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~E  317 (388)
T COG5238         253 LLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIKE  317 (388)
T ss_pred             hhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcchh
Confidence            55432221110    012355666666666544332211       1345667777777777653

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=98.02  E-value=4.8e-07  Score=93.82  Aligned_cols=303  Identities=21%  Similarity=0.119  Sum_probs=143.5

Q ss_pred             CCCCEEECCCCCCCccCC--ccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCC-CCCCCchh-hhc
Q 040113          152 SRLSYLNLSHSSFFGQIP--SEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV-SIRSTIPH-NLA  227 (887)
Q Consensus       152 ~~L~~L~Ls~n~~~~~~p--~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~-~l~  227 (887)
                      ..|+.|.++++.-.+.-+  ..-.+++++++|.+.++.    .+.+..+-..-..+++|++|++..| .++..... ...
T Consensus       138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~----~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~  213 (483)
T KOG4341|consen  138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCK----KITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAE  213 (483)
T ss_pred             cccccccccccccCCcchhhHHhhhCCchhhhhhhcce----eccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHH
Confidence            467888888886544333  333468888888888775    2222344455566777888877773 34433333 223


Q ss_pred             CCCCCCEEEcccCC-CCCc-cccccCCCCCCcEEeCcCCCCCCc--chhhccCCCCCCEEEccCCCCCCccc--hhhhCC
Q 040113          228 NLSSLTFLSLHSCG-LQGR-IQSSLGNLSKLLHLDLSLNELLGE--LPVSIGNLHSLKKLDLSINNLSGELP--TSIQNL  301 (887)
Q Consensus       228 ~l~~L~~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~L~~L~L~~n~l~~~~~--~~l~~l  301 (887)
                      .+++|++|++++|. +++. +.....+++.++.+.+.+|.-.+.  +-..-+.+..+.++++..|.......  ..-..+
T Consensus       214 gC~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c  293 (483)
T KOG4341|consen  214 GCRKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGC  293 (483)
T ss_pred             hhhhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhh
Confidence            56677777776664 2221 111223444455554444321110  00001222334444444442211110  011234


Q ss_pred             CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCE
Q 040113          302 VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLIT  380 (887)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~  380 (887)
                      ..|+.|+.+++...+..+-.....+..+|+.+.++.++-                       ++..-... -.+.+.|+.
T Consensus       294 ~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~-----------------------fsd~~ft~l~rn~~~Le~  350 (483)
T KOG4341|consen  294 HALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQ-----------------------FSDRGFTMLGRNCPHLER  350 (483)
T ss_pred             hHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccch-----------------------hhhhhhhhhhcCChhhhh
Confidence            445555555443322222222223344444444444431                       11111011 123455555


Q ss_pred             EEcCCCCCccccchhhhhcCCCCCCEEEccCCcc-ccccccc---CCCCCCCeeEEeeCCCCCc--ccChhhhcCCcccE
Q 040113          381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL-SLLTKVT---SNTTSQKFTVVGLRSCNLI--EFPNFLKNQHHLML  454 (887)
Q Consensus       381 L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i-~~~~~~~---~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~  454 (887)
                      +++..+...........-.+++.|+.+.++.|.. +..+...   .......+..+.+++|...  ...+.+..+++|+.
T Consensus       351 l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Ler  430 (483)
T KOG4341|consen  351 LDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLER  430 (483)
T ss_pred             hcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccce
Confidence            5555554332222222244556666666665532 1111110   1124556777777777665  45567788889999


Q ss_pred             EecccCcccCCCCccccccCCCCCcEE
Q 040113          455 LDLSSNRIHGKIPSWLLDPSTQNLSAL  481 (887)
Q Consensus       455 L~Ls~n~l~~~~p~~~~~~~~~~L~~L  481 (887)
                      +++.+++-...-+..-+...+|+++..
T Consensus       431 i~l~~~q~vtk~~i~~~~~~lp~i~v~  457 (483)
T KOG4341|consen  431 IELIDCQDVTKEAISRFATHLPNIKVH  457 (483)
T ss_pred             eeeechhhhhhhhhHHHHhhCccceeh
Confidence            998888754333322222335554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.82  E-value=6.3e-05  Score=80.66  Aligned_cols=77  Identities=12%  Similarity=0.135  Sum_probs=45.8

Q ss_pred             ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCC
Q 040113          593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK  672 (887)
Q Consensus       593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  672 (887)
                      +..+.+++.|++++|.++ .+| .+  ..+|++|.++++.--..+|+.+  .++|+.|++++|.....+|        .+
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP-~L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP--------~s  113 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLP-VL--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP--------ES  113 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccC-CC--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc--------cc
Confidence            344577888888888777 345 22  2468888887754444445443  2477788887773222221        34


Q ss_pred             CCEEEcCCCcC
Q 040113          673 LRIIDLSNNRF  683 (887)
Q Consensus       673 L~~L~Ls~N~l  683 (887)
                      |+.|+++++..
T Consensus       114 Le~L~L~~n~~  124 (426)
T PRK15386        114 VRSLEIKGSAT  124 (426)
T ss_pred             cceEEeCCCCC
Confidence            66666665543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.74  E-value=3.7e-06  Score=73.72  Aligned_cols=60  Identities=28%  Similarity=0.401  Sum_probs=30.7

Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL  808 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~  808 (887)
                      +.++.|+|++|.|+ .+|.++..++.|+.||++.|.+. ..|..+..|.+|.+||.-+|.+.
T Consensus        77 ~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen   77 PTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLN-AEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             chhhhhhcchhhhh-hchHHHhhhHHhhhcccccCccc-cchHHHHHHHhHHHhcCCCCccc
Confidence            34455555555555 44555555555555555555554 33444444555555555555444

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.69  E-value=2.6e-05  Score=55.47  Aligned_cols=17  Identities=65%  Similarity=0.888  Sum_probs=6.8

Q ss_pred             ccCCCCCCEEeCCCCcc
Q 040113          791 LGNLTNLESLDLSNNNF  807 (887)
Q Consensus       791 l~~L~~L~~L~Ls~N~l  807 (887)
                      +++|++|+.|++++|++
T Consensus        20 l~~l~~L~~L~l~~N~i   36 (44)
T PF12799_consen   20 LSNLPNLETLNLSNNPI   36 (44)
T ss_dssp             GTTCTTSSEEEETSSCC
T ss_pred             HhCCCCCCEEEecCCCC
Confidence            33344444444444433

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.62  E-value=4.7e-05  Score=54.15  Aligned_cols=37  Identities=35%  Similarity=0.548  Sum_probs=32.1

Q ss_pred             ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccc
Q 040113          748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG  785 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  785 (887)
                      .|++|++++|+|+ .+|..+++|++|+.|++++|+++.
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~~   38 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPISD   38 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCSB
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCCC
Confidence            5899999999999 567789999999999999999984

...

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.54  E-value=0.00015  Score=68.35  Aligned_cols=129  Identities=20%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      +.+++.+.++.  .-..++....+...+||++|.+...  ..|..++.|.+|.+++|.|+.+.|.--.-+++|..|.|.+
T Consensus        22 ~e~~LR~lkip--~ienlg~~~d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIP--VIENLGATLDQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             ccccccccccc--chhhccccccccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecC
Confidence            44555555443  1122334444677888888887543  3567788888899999998877776666677888999998


Q ss_pred             CcCCCCC-CccccCCCCCCEEEccCCcccccCC-CCccccCCCCCCEEEcCCCcC
Q 040113          631 NQIRDIF-PSWLGTLPNLTVLILQSNKFYGIIR-EPRIDCGFSKLRIIDLSNNRF  683 (887)
Q Consensus       631 N~l~~~~-~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~~~~l~~L~~L~Ls~N~l  683 (887)
                      |.|.... -..+..+|.|++|.+-+|+.+..-. .....+.+++|+.||.++=..
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~  152 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR  152 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence            8876541 1346778899999998888765421 122345678999999876543

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.52  E-value=6.4e-05  Score=87.81  Aligned_cols=106  Identities=28%  Similarity=0.343  Sum_probs=50.6

Q ss_pred             CCCCEEECCCCCC-CccCCccccC-CCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCC
Q 040113          152 SRLSYLNLSHSSF-FGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANL  229 (887)
Q Consensus       152 ~~L~~L~Ls~n~~-~~~~p~~l~~-l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l  229 (887)
                      .+|++||+++... ...-|..++. +|.|++|.+++-.+     ....+.....++++|..||+++++++..  ..++++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~-----~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~L  194 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQF-----DNDDFSQLCASFPNLRSLDISGTNISNL--SGISRL  194 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCcee-----cchhHHHHhhccCccceeecCCCCccCc--HHHhcc
Confidence            3566666666432 2222334443 56666666655331     1123444455556666666665555443  345555


Q ss_pred             CCCCEEEcccCCCCC-ccccccCCCCCCcEEeCcCC
Q 040113          230 SSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLN  264 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~Ls~n  264 (887)
                      ++|++|.+.+=.+.. ..-..+.++++|++||+|..
T Consensus       195 knLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~  230 (699)
T KOG3665|consen  195 KNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRD  230 (699)
T ss_pred             ccHHHHhccCCCCCchhhHHHHhcccCCCeeecccc
Confidence            555555554433321 11122344555555555544

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.51  E-value=3.9e-05  Score=89.53  Aligned_cols=135  Identities=24%  Similarity=0.218  Sum_probs=83.3

Q ss_pred             CCCCeEECCCCCCCCCCCCcccc-CCCCCCEEECCCCCCCc-cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhc
Q 040113          127 VHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSFFG-QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEK  204 (887)
Q Consensus       127 ~~L~~L~L~~n~~~~~~lp~~~~-~l~~L~~L~Ls~n~~~~-~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~  204 (887)
                      .+|++||+++...-...-|..++ .||.|++|.+++-.+.. .+-.-..++++|++||+|++.+..+        ..+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--------~GIS~  193 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--------SGISR  193 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--------HHHhc
Confidence            46778888775543222334444 47888888887765532 2233344678888888888875544        36778


Q ss_pred             CCCCCEEEccCCCCCC-CchhhhcCCCCCCEEEcccCCCCCcc--c----cccCCCCCCcEEeCcCCCCCCc
Q 040113          205 LSNLETLDLGYVSIRS-TIPHNLANLSSLTFLSLHSCGLQGRI--Q----SSLGNLSKLLHLDLSLNELLGE  269 (887)
Q Consensus       205 l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~--~----~~l~~l~~L~~L~Ls~n~l~~~  269 (887)
                      +++|++|.+.+-.+.. ..-..+..+++|++||+|........  .    +.-..+|+|+.||.|++.+...
T Consensus       194 LknLq~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~  265 (699)
T KOG3665|consen  194 LKNLQVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEE  265 (699)
T ss_pred             cccHHHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHH
Confidence            8888888877766654 33445777888888888876644221  0    1112356666666666655543

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.50  E-value=0.00031  Score=75.45  Aligned_cols=55  Identities=16%  Similarity=0.225  Sum_probs=25.9

Q ss_pred             cCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC-CcccChhhhcCCcccEEecccC
Q 040113          399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN-LIEFPNFLKNQHHLMLLDLSSN  460 (887)
Q Consensus       399 ~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~-l~~~~~~l~~~~~L~~L~Ls~n  460 (887)
                      ..+++++.|++++|.+..++.     .+.+|+.|.+++|. +..+|..+.  ++|+.|++++|
T Consensus        49 ~~~~~l~~L~Is~c~L~sLP~-----LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~C  104 (426)
T PRK15386         49 EEARASGRLYIKDCDIESLPV-----LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHC  104 (426)
T ss_pred             HHhcCCCEEEeCCCCCcccCC-----CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCc
Confidence            345666667766665554442     22345555555442 223333221  34444444444

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.26  E-value=0.00056  Score=64.67  Aligned_cols=84  Identities=23%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113          255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD  334 (887)
Q Consensus       255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  334 (887)
                      ....+||++|.+...  ..|..++.|.+|.+.+|+|+...|.--.-+++|+.|.|.+|.+. .+.+-.-+..++.|+.|.
T Consensus        43 ~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~-~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQ-ELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             ccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchh-hhhhcchhccCCccceee
Confidence            445556666655321  23445556666666666665444443344455666666665554 111111134455555555


Q ss_pred             ccCCCCC
Q 040113          335 FTSNKFS  341 (887)
Q Consensus       335 L~~n~l~  341 (887)
                      +-+|..+
T Consensus       120 ll~Npv~  126 (233)
T KOG1644|consen  120 LLGNPVE  126 (233)
T ss_pred             ecCCchh
Confidence            5555443

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.61  E-value=0.0013  Score=65.04  Aligned_cols=67  Identities=28%  Similarity=0.366  Sum_probs=34.0

Q ss_pred             CCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113          374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI  440 (887)
Q Consensus       374 ~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~  440 (887)
                      .+++|++|.++.|..............+++|+++++++|++..+..+.....+.+|..|++.+|..+
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~  129 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVT  129 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCcc
Confidence            3555666666666332222222224445666666666666665554444444455555555555444

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.58  E-value=0.00076  Score=77.70  Aligned_cols=110  Identities=26%  Similarity=0.122  Sum_probs=49.0

Q ss_pred             CCCCCEEEccCCCCCCC--chhhhcCCCCCCEEEcccC-CCCCcc----ccccCCCCCCcEEeCcCCC-CCCcchhhcc-
Q 040113          205 LSNLETLDLGYVSIRST--IPHNLANLSSLTFLSLHSC-GLQGRI----QSSLGNLSKLLHLDLSLNE-LLGELPVSIG-  275 (887)
Q Consensus       205 l~~L~~L~L~~n~~~~~--~~~~l~~l~~L~~L~L~~n-~l~~~~----~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~-  275 (887)
                      ++.|+.|.+..+.-...  .......+++|+.|+++++ ......    ......+++|+.|+++++. ++...-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555432222  2233445556666665552 111111    1122344556666666555 3333222222 


Q ss_pred             CCCCCCEEEccCCC-CCCccch-hhhCCCCCCEEEccCCcC
Q 040113          276 NLHSLKKLDLSINN-LSGELPT-SIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       276 ~l~~L~~L~L~~n~-l~~~~~~-~l~~l~~L~~L~L~~n~l  314 (887)
                      .+++|++|.+..|. ++...-. ....++.|++|+++.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25566666655554 3332222 223455566666665544

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.50  E-value=0.0058  Score=55.85  Aligned_cols=103  Identities=18%  Similarity=0.281  Sum_probs=35.3

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL  623 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  623 (887)
                      |.++++|+.+.+.. .+.......|..+. +|+.+.+.++ +.......|..+.+++.+.+.+ .+.......|..+++|
T Consensus         8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~-~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l   83 (129)
T PF13306_consen    8 FYNCSNLESITFPN-TIKKIGENAFSNCT-SLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL   83 (129)
T ss_dssp             TTT-TT--EEEETS-T--EE-TTTTTT-T-T-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred             HhCCCCCCEEEECC-CeeEeChhhccccc-cccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence            44455555555543 23323333344443 3555555443 3333334444444455554433 2222333344444444


Q ss_pred             cEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113          624 EFLDIGDNQIRDIFPSWLGTLPNLTVLIL  652 (887)
Q Consensus       624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  652 (887)
                      +.+++..+ +..+....|.+. +|+.+.+
T Consensus        84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~  110 (129)
T PF13306_consen   84 KNIDIPSN-ITEIGSSSFSNC-NLKEINI  110 (129)
T ss_dssp             CEEEETTT--BEEHTTTTTT--T--EEE-
T ss_pred             cccccCcc-ccEEchhhhcCC-CceEEEE
Confidence            44444433 333333333333 4444433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.45  E-value=0.00066  Score=78.17  Aligned_cols=63  Identities=32%  Similarity=0.262  Sum_probs=29.3

Q ss_pred             CCCCCCEEEcccCC-CCCccccccC-CCCCCcEEeCcCCC-CCCc-chhhccCCCCCCEEEccCCCC
Q 040113          228 NLSSLTFLSLHSCG-LQGRIQSSLG-NLSKLLHLDLSLNE-LLGE-LPVSIGNLHSLKKLDLSINNL  290 (887)
Q Consensus       228 ~l~~L~~L~L~~n~-l~~~~~~~l~-~l~~L~~L~Ls~n~-l~~~-~p~~l~~l~~L~~L~L~~n~l  290 (887)
                      .+++|+.|+++++. +++..-..+. .+++|++|.+.++. ++.. +-.....+++|++|++++|..
T Consensus       241 ~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  241 ICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            34555555555555 3332222222 25556666555554 3322 112223455566666665544

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.30  E-value=0.0027  Score=62.95  Aligned_cols=36  Identities=25%  Similarity=0.198  Sum_probs=16.7

Q ss_pred             CCCCCCEEEcCCCCCcccc-chhhhhcCCCCCCEEEc
Q 040113          374 NLTQLITLDLSQNSYRGTM-ELDFLLVSLKNLEVLSL  409 (887)
Q Consensus       374 ~l~~L~~L~L~~n~l~~~~-~~~~~l~~l~~L~~L~L  409 (887)
                      .+++|..|++.+|..+... .....+.-+++|++|+-
T Consensus       114 ~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~  150 (260)
T KOG2739|consen  114 ELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLDG  150 (260)
T ss_pred             hhcchhhhhcccCCccccccHHHHHHHHhhhhccccc
Confidence            3445555566555544321 11223445555555543

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=96.29  E-value=0.024  Score=51.68  Aligned_cols=117  Identities=18%  Similarity=0.196  Sum_probs=66.1

Q ss_pred             CCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEc
Q 040113          525 RTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL  604 (887)
Q Consensus       525 ~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  604 (887)
                      +++.+.+.+ .+...-...|..+++|+.+.+.++ +.......|..+. +++.+.+.+ .+.......|..+++|+.+++
T Consensus        13 ~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~   88 (129)
T PF13306_consen   13 NLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCK-SLESITFPN-NLKSIGDNAFSNCTNLKNIDI   88 (129)
T ss_dssp             T--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-T-T-EEEEETS-TT-EE-TTTTTT-TTECEEEE
T ss_pred             CCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeeccc-ccccccccc-ccccccccccccccccccccc
Confidence            445555443 333344456888889999999885 6655566777776 699999976 555566678888999999999


Q ss_pred             cCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCC
Q 040113          605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT  648 (887)
Q Consensus       605 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  648 (887)
                      ..+ +.......|.++ .|+.+.+.. .+..+....|.++++|+
T Consensus        89 ~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l~  129 (129)
T PF13306_consen   89 PSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKLK  129 (129)
T ss_dssp             TTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG------
T ss_pred             Ccc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccCC
Confidence            876 666777789888 999999886 56666666777777664

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.95  E-value=0.00044  Score=68.40  Aligned_cols=83  Identities=28%  Similarity=0.279  Sum_probs=37.9

Q ss_pred             CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCcc-chhhhCCCCCCEEE
Q 040113          230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL-PTSIQNLVSLEELD  308 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~  308 (887)
                      .+.+.|++.+|.+.++  .....++.|++|.|+-|+|+..  ..+..|++|++|+|..|.|.... -..+.++++|+.|.
T Consensus        19 ~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LW   94 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLW   94 (388)
T ss_pred             HHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHh
Confidence            3445555555555432  2234455555555555555432  22444555555555555544211 11234444444444


Q ss_pred             ccCCcCCC
Q 040113          309 LSFNKLSG  316 (887)
Q Consensus       309 L~~n~l~~  316 (887)
                      |..|...|
T Consensus        95 L~ENPCc~  102 (388)
T KOG2123|consen   95 LDENPCCG  102 (388)
T ss_pred             hccCCccc
Confidence            44444433

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.00064  Score=67.25  Aligned_cols=63  Identities=30%  Similarity=0.315  Sum_probs=25.8

Q ss_pred             CCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcc-ccccCCCCCccEEEccCCcCCc
Q 040113          300 NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL-HASIGNLRSLEVLAIGRCNFSG  366 (887)
Q Consensus       300 ~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~  366 (887)
                      +++.|+.|.|+-|+++..-|    +..+++|++|+|..|.|.... ...+.++++|+.|.|..|...|
T Consensus        39 kMp~lEVLsLSvNkIssL~p----l~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc~  102 (388)
T KOG2123|consen   39 KMPLLEVLSLSVNKISSLAP----LQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCCG  102 (388)
T ss_pred             hcccceeEEeeccccccchh----HHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCccc
Confidence            34444444444444443222    334444444444444443211 1223344444444444444433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.37  E-value=0.0066  Score=35.77  Aligned_cols=12  Identities=67%  Similarity=0.814  Sum_probs=5.1

Q ss_pred             CCEEeCCCCccc
Q 040113          797 LESLDLSNNNFL  808 (887)
Q Consensus       797 L~~L~Ls~N~l~  808 (887)
                      |++|||++|+++
T Consensus         2 L~~Ldls~n~l~   13 (22)
T PF00560_consen    2 LEYLDLSGNNLT   13 (22)
T ss_dssp             ESEEEETSSEES
T ss_pred             ccEEECCCCcCE
Confidence            344444444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.24  E-value=0.0069  Score=35.70  Aligned_cols=19  Identities=47%  Similarity=0.761  Sum_probs=9.5

Q ss_pred             CCEEeCCCCcccccCCcccc
Q 040113          773 LQVLNLDNNNLQGHIPSCLG  792 (887)
Q Consensus       773 L~~L~Ls~N~l~~~~p~~l~  792 (887)
                      |++|||++|+++ .+|..|+
T Consensus         2 L~~Ldls~n~l~-~ip~~~~   20 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFS   20 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTT
T ss_pred             ccEEECCCCcCE-eCChhhc
Confidence            455555555555 4444444

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=93.13  E-value=0.0014  Score=73.44  Aligned_cols=65  Identities=37%  Similarity=0.371  Sum_probs=31.7

Q ss_pred             cCCCCCCcEEeCcCCCCCCcch----hhccCC-CCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113          250 LGNLSKLLHLDLSLNELLGELP----VSIGNL-HSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       250 l~~l~~L~~L~Ls~n~l~~~~p----~~l~~l-~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  314 (887)
                      +...+.|+.|++++|.+.+.-.    ..+... ..+++|++..|.+++.    +.+.+.....++.++++.|.+
T Consensus       111 l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L~~~~~l~~l~l~~n~l  184 (478)
T KOG4308|consen  111 LKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVLEKNEHLTELDLSLNGL  184 (478)
T ss_pred             hcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHHhcccchhHHHHHhccc
Confidence            3444555555555555543211    111121 3455555555655433    334445555666666666655

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=91.20  E-value=0.0049  Score=69.09  Aligned_cols=186  Identities=28%  Similarity=0.313  Sum_probs=92.9

Q ss_pred             CCeEECCCCCCCCCC---CCccccCCCCCCEEECCCCCCCccCCc----cccCC-CCCcEEEccCCCCCCccccCCChHH
Q 040113          129 LEWLNLAFNDFKSSE---IPSEIINLSRLSYLNLSHSSFFGQIPS----EILEL-VNLVSLDLSLNSGYGLELQKPNFAN  200 (887)
Q Consensus       129 L~~L~L~~n~~~~~~---lp~~~~~l~~L~~L~Ls~n~~~~~~p~----~l~~l-~~L~~L~l~~n~~~~l~~~~~~~~~  200 (887)
                      +..|.|.+|.+....   +-..+.....|+.|++++|.+.+.--.    .+... ..|++|++..|.+...  ....+..
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~--g~~~l~~  166 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSE--GAAPLAA  166 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhccccccc--chHHHHH
Confidence            445555555544321   112234445555555555555322111    11111 2344455554442211  1123344


Q ss_pred             HhhcCCCCCEEEccCCCCCC----Cchhhhc----CCCCCCEEEcccCCCCCc----cccccCCCCC-CcEEeCcCCCCC
Q 040113          201 LVEKLSNLETLDLGYVSIRS----TIPHNLA----NLSSLTFLSLHSCGLQGR----IQSSLGNLSK-LLHLDLSLNELL  267 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n~~~~----~~~~~l~----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~-L~~L~Ls~n~l~  267 (887)
                      .+.....++.++++.|.+..    .++..+.    ...++++|.+++|.++..    ....+...+. +..|++..|.+.
T Consensus       167 ~L~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~  246 (478)
T KOG4308|consen  167 VLEKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLG  246 (478)
T ss_pred             HHhcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcc
Confidence            45555556666666555421    1122222    356677777777766532    1122334444 566777777765


Q ss_pred             Cc----chhhccCC-CCCCEEEccCCCCCCcc----chhhhCCCCCCEEEccCCcCCC
Q 040113          268 GE----LPVSIGNL-HSLKKLDLSINNLSGEL----PTSIQNLVSLEELDLSFNKLSG  316 (887)
Q Consensus       268 ~~----~p~~l~~l-~~L~~L~L~~n~l~~~~----~~~l~~l~~L~~L~L~~n~l~~  316 (887)
                      +.    ..+.+..+ ..+++++++.|.++...    ...+..++.++++.++.|.+..
T Consensus       247 d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  247 DVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             hHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            33    22334444 56778888888876543    3445566788888888887753

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=87.47  E-value=0.1  Score=49.94  Aligned_cols=82  Identities=21%  Similarity=0.210  Sum_probs=39.9

Q ss_pred             CCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCC-CCCccccccCCCCCccE
Q 040113          278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK-FSGELHASIGNLRSLEV  356 (887)
Q Consensus       278 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~  356 (887)
                      ..++.++-++..|..+--+.+..++.++.|.+.+|.-.+..--...-+-.++|+.|++++|. |+..--..+..+++|+.
T Consensus       101 ~~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~  180 (221)
T KOG3864|consen  101 VKIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR  180 (221)
T ss_pred             ceEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence            34566666776666665566666666676666666543222111111123445555555442 33333333334444444


Q ss_pred             EEc
Q 040113          357 LAI  359 (887)
Q Consensus       357 L~L  359 (887)
                      |.+
T Consensus       181 L~l  183 (221)
T KOG3864|consen  181 LHL  183 (221)
T ss_pred             HHh
Confidence            443

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=86.82  E-value=0.5  Score=29.01  Aligned_cols=14  Identities=57%  Similarity=0.752  Sum_probs=6.3

Q ss_pred             CCCCEEeCCCCccc
Q 040113          795 TNLESLDLSNNNFL  808 (887)
Q Consensus       795 ~~L~~L~Ls~N~l~  808 (887)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>smart00370 LRR Leucine-rich repeats, outliers

Probab=86.82  E-value=0.5  Score=29.01  Aligned_cols=14  Identities=57%  Similarity=0.752  Sum_probs=6.3

Q ss_pred             CCCCEEeCCCCccc
Q 040113          795 TNLESLDLSNNNFL  808 (887)
Q Consensus       795 ~~L~~L~Ls~N~l~  808 (887)
                      ++|++|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444444444444

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=86.80  E-value=0.032  Score=54.17  Aligned_cols=83  Identities=19%  Similarity=0.161  Sum_probs=71.1

Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV  826 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l  826 (887)
                      ...+.||++.|++. ..-..|+-++.|..||++.|++. ..|..++++..+..+++..|..+ ..|.++..++.+++++.
T Consensus        42 kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k~~e~  118 (326)
T KOG0473|consen   42 KRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPKKNEQ  118 (326)
T ss_pred             ceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcchhhh
Confidence            45788999999986 44556777888999999999987 78899999999999999999988 57888999999999999


Q ss_pred             ccCccc
Q 040113          827 SDNYLT  832 (887)
Q Consensus       827 s~N~l~  832 (887)
                      -.|.+.
T Consensus       119 k~~~~~  124 (326)
T KOG0473|consen  119 KKTEFF  124 (326)
T ss_pred             ccCcch
Confidence            988865

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=86.40  E-value=0.44  Score=25.95  Aligned_cols=12  Identities=67%  Similarity=1.024  Sum_probs=4.6

Q ss_pred             CCCEEEcCCCcC
Q 040113          672 KLRIIDLSNNRF  683 (887)
Q Consensus       672 ~L~~L~Ls~N~l  683 (887)
                      +|+.|++++|++
T Consensus         2 ~L~~L~l~~n~L   13 (17)
T PF13504_consen    2 NLRTLDLSNNRL   13 (17)
T ss_dssp             T-SEEEETSS--
T ss_pred             ccCEEECCCCCC
Confidence            345555555554

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.40  E-value=0.034  Score=53.98  Aligned_cols=82  Identities=18%  Similarity=0.115  Sum_probs=60.3

Q ss_pred             CCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCc
Q 040113          100 TGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLV  179 (887)
Q Consensus       100 ~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~  179 (887)
                      ..+|+.||++.+.+...-.   .+..++.|..||++.|.+.-  +|..++.+..++.+++..|.. ...|.++++.+.++
T Consensus        41 ~kr~tvld~~s~r~vn~~~---n~s~~t~~~rl~~sknq~~~--~~~d~~q~~e~~~~~~~~n~~-~~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   41 FKRVTVLDLSSNRLVNLGK---NFSILTRLVRLDLSKNQIKF--LPKDAKQQRETVNAASHKNNH-SQQPKSQKKEPHPK  114 (326)
T ss_pred             cceeeeehhhhhHHHhhcc---chHHHHHHHHHhccHhhHhh--ChhhHHHHHHHHHHHhhccch-hhCCccccccCCcc
Confidence            4688888888887653321   56667778888888887763  677888888888888877766 46777778888888


Q ss_pred             EEEccCCC
Q 040113          180 SLDLSLNS  187 (887)
Q Consensus       180 ~L~l~~n~  187 (887)
                      ++++-.+.
T Consensus       115 ~~e~k~~~  122 (326)
T KOG0473|consen  115 KNEQKKTE  122 (326)
T ss_pred             hhhhccCc
Confidence            87777664

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.92  E-value=0.74  Score=28.23  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=13.5

Q ss_pred             ccCCCEEeCCCCcccccCCccc
Q 040113          770 LKGLQVLNLDNNNLQGHIPSCL  791 (887)
Q Consensus       770 l~~L~~L~Ls~N~l~~~~p~~l  791 (887)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777777777774433333

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.92  E-value=0.74  Score=28.23  Aligned_cols=22  Identities=36%  Similarity=0.561  Sum_probs=13.5

Q ss_pred             ccCCCEEeCCCCcccccCCccc
Q 040113          770 LKGLQVLNLDNNNLQGHIPSCL  791 (887)
Q Consensus       770 l~~L~~L~Ls~N~l~~~~p~~l  791 (887)
                      +++|+.|+|++|+++...+..|
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~f   22 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGAF   22 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHHc
Confidence            3567777777777774433333

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=82.64  E-value=0.32  Score=29.23  Aligned_cols=14  Identities=64%  Similarity=0.854  Sum_probs=5.5

Q ss_pred             CCCEEeCCCCcccc
Q 040113          796 NLESLDLSNNNFLG  809 (887)
Q Consensus       796 ~L~~L~Ls~N~l~~  809 (887)
                      +|++|+|++|+++.
T Consensus         3 ~L~~L~l~~n~i~~   16 (24)
T PF13516_consen    3 NLETLDLSNNQITD   16 (24)
T ss_dssp             T-SEEE-TSSBEHH
T ss_pred             CCCEEEccCCcCCH
Confidence            44444444444443

...

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	887
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		1e-49
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		1e-48
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		2e-13

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  195 bits (495), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 198/652 (30%), Positives = 281/652 (43%), Gaps = 114/652 (17%)
Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
           V +    +L+ LD+S NN S  +P  + +  +L+ LD+S NKLSG+F  S  I   T+L+
Sbjct: 191 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--SRAISTCTELK 247
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT-LDLSQNSYRG 390
            L+ +SN+F G +      L+SL+ L++    F+G IP  L      +T LDLS N + G
Sbjct: 248 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 305
Query: 391 TMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQ 449
            +   F                        +   +S  F+          E P + L   
Sbjct: 306 AVPPFF-----------------GSCSLLESLALSSNNFSG---------ELPMDTLLKM 339
Query: 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLD 509
             L +LDLS N   G++P  L + S                              LLTLD
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSAS----------------------------LLTLD 371
Query: 510 LSSNNLQGPLPVP-----PSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
           LSSNN  GP+ +P     P  T+  L + NN F G+IP  L     L  L LS N LSG 
Sbjct: 372 LSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 430
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
           +P  LGS S KL  L L  N   G IP   M    L  + L  N   G IP  L NC+ L
Sbjct: 431 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 489
Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
            ++ + +N++    P W+G L NL +L L +N F G I     DC    L  +DL+ N F
Sbjct: 490 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 547
Query: 684 TGKLPSKSFL--------------------------CWNAMKIVNTSDLK--YLQDVISP 715
            G +P+  F                           C  A  ++    ++   L  + + 
Sbjct: 548 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 607
Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXX 775
               ++  V     S   +N G +M  D          +S N   G IP  I ++     
Sbjct: 608 NPCNITSRVYGGHTSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFI 657
Query: 776 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
                    G IP  +G+L  L  LDLS+N   G+IPQ +  LT L   ++S+N L+GPI
Sbjct: 658 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 717
Query: 836 PQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDHSKGAEESIFRRI 887
           P+  QF TF  + F +N GLCG PL R C+    P+N D     + S  RR+
Sbjct: 718 PEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNADGYAHHQRSHGRRL 764

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  192 bits (487), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 195/639 (30%), Positives = 276/639 (43%), Gaps = 114/639 (17%)
Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
           V +    +L+ LD+S NN S  +P  + +  +L+ LD+S NKLSG+F  S  I   T+L+
Sbjct: 194 VDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDF--SRAISTCTELK 250
Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT-LDLSQNSYRG 390
            L+ +SN+F G +      L+SL+ L++    F+G IP  L      +T LDLS N + G
Sbjct: 251 LLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYG 308
Query: 391 TMELDFLLVSLKNXXXXXXXXXXXXXXTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQ 449
            +   F                        +   +S  F+          E P + L   
Sbjct: 309 AVPPFF-----------------GSCSLLESLALSSNNFSG---------ELPMDTLLKM 342
Query: 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQXXXXXXXXXXXXTGFDQQLVVLPGGKRFLLTLD 509
             L +LDLS N   G++P  L + S                              LLTLD
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSAS----------------------------LLTLD 374
Query: 510 LSSNNLQGPLPVP-----PSRTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
           LSSNN  GP+ +P     P  T+  L + NN F G+IP  L     L  L LS N LSG 
Sbjct: 375 LSSNNFSGPI-LPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGT 433
Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
           +P  LGS S KL  L L  N   G IP   M    L  + L  N   G IP  L NC+ L
Sbjct: 434 IPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
            ++ + +N++    P W+G L NL +L L +N F G I     DC    L  +DL+ N F
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC--RSLIWLDLNTNLF 550
Query: 684 TGKLPSKSFL--------------------------CWNAMKIVNTSDLK--YLQDVISP 715
            G +P+  F                           C  A  ++    ++   L  + + 
Sbjct: 551 NGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTR 610
Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGXXX 775
               ++  V     S   +N G +M  D          +S N   G IP  I ++     
Sbjct: 611 NPCNITSRVYGGHTSPTFDNNGSMMFLD----------MSYNMLSGYIPKEIGSMPYLFI 660
Query: 776 XXXXXXXXXGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
                    G IP  +G+L  L  LDLS+N   G+IPQ +  LT L   ++S+N L+GPI
Sbjct: 661 LNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPI 720
Query: 836 PQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNED 874
           P+  QF TF  + F +N GLCG PL R C+    P+N D
Sbjct: 721 PEMGQFETFPPAKFLNNPGLCGYPLPR-CD----PSNAD 754

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 74.7 bits (182), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 89/316 (28%), Positives = 116/316 (36%), Gaps = 54/316 (17%)
Query: 570 SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH-NLFQGR-IPRSLINCSKLEFLD 627
           + S  L   D     + G + +T  +  R+  +DLS  NL +   IP SL N   L FL 
Sbjct: 23  TLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLY 82
Query: 628 IGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK 686
           IG  N +    P  +  L  L  L +      G I  P        L  +D S N  +G 
Sbjct: 83  IGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAI--PDFLSQIKTLVTLDFSYNALSGT 140
Query: 687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVP 746
           LP       N + I  T D   +   I                           +Y    
Sbjct: 141 LPPSISSLPNLVGI--TFDGNRISGAIPD-------------------------SYGSFS 173
Query: 747 DILTSIILSSNRFDGMIPTSIANLK-------------------GXXXXXXXXXXXXGHI 787
            + TS+ +S NR  G IP + ANL                    G              +
Sbjct: 174 KLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL 233
Query: 788 PSCLGNL---TNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATF 844
              LG +    NL  LDL NN   G +PQ L +L FL   NVS N L G IPQG     F
Sbjct: 234 AFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRF 293
Query: 845 DNSSFESNSGLCGRPL 860
           D S++ +N  LCG PL
Sbjct: 294 DVSAYANNKCLCGSPL 309

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	887
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	0.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-98
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-85
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	9e-79
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-77
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	7e-66
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-60
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-44
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-39
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-18
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-76
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	3e-74
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-67
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-66
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	5e-57
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-47
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-38
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-71
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-63
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-47
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	8e-37
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-21
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-20
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-19
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	9e-66
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-65
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-59
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-56
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-49
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-29
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-24
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-14
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	2e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-57
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-56
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-41
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-16
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-61
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-35
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-30
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-52
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-43
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-24
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-09
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-49
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-46
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-45
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-38
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-35
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-30
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-15
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-12
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-11
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-39
1o6v_A	466	Internalin A; bacterial infection, extracellular r	9e-38
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-35
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-31
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-24
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-18
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-39
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-32
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-23
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-18
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-13
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-04
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-38
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-32
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-29
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-28
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-22
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	8e-21
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-13
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-11
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-34
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-33
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	4e-26
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-23
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-30
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-26
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-23
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	5e-21
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-28
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-20
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-18
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-16
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	2e-10
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	4e-06
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	5e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	7e-30
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-28
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-22
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-20
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-18
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-07
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-30
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-27
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	3e-14
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	4e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-11
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-10
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-30
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-28
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-27
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-26
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	7e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-05
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-30
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	7e-29
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-25
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-24
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-13
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-26
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	3e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-25
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-18
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	9e-14
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-26
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-24
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-21
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	4e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-15
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-13
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-26
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	4e-19
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	7e-17
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	2e-07
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-26
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	2e-24
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-22
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	1e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-20
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-16
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-12
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	9e-26
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-16
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-13
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	3e-10
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	4e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-18
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-14
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	8e-22
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	3e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-16
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-16
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-21
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	4e-19
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-18
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-14
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-13
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	9e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-21
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-20
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-19
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-18
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-14
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-07
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-21
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-17
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	8e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	9e-16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-15
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	2e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-14
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	5e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-11
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	6e-10
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-07
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-20
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-17
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	4e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-19
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	1e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-14
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	4e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	2e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	9e-19
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-16
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-19
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-18
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-12
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-11
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-07
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-04
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	8e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-19
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-17
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	9e-15
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-14
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	1e-13
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	5e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-19
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-18
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	9e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	5e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-05
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-18
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-13
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	7e-11
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-08
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	7e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	7e-08
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	5e-07
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	6e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	3e-15
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	4e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	8e-10
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	9e-07
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-04
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-11
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-09
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	6e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-08
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	4e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-05
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-09
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-07
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	6e-05
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-13
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	6e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	9e-09
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-08
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-11
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-10
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	5e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-11
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	9e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	5e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-10
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	3e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	8e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-05
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-11
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	8e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-10
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-07
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	1e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-10
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	7e-10
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	8e-08
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	5e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	9e-05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	4e-07
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-06
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	6e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-07
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-06
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	5e-04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-08
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	2e-07
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	6e-08
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	8e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	9e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-07
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	9e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-04
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	7e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	4e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	6e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-06
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	8e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	2e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	1e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	2e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	6e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  584 bits (1509), Expect = 0.0
 Identities = 234/875 (26%), Positives = 347/875 (39%), Gaps = 141/875 (16%)

Query: 27  TFSTASSVLRLCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNI 86
           +F  + S        E   L+ FK+ L   +                     W     N 
Sbjct: 1   SFQASPS---QSLYREIHQLISFKDVLPDKN-----------------LLPDWSS---NK 37

Query: 87  DCCSWDGVECSENTGHVMKLDLSNSCLYGSINS-SSSLFKLVHLEWLNLAFNDFKSSEIP 145
           + C++DGV C      V  +DLS+  L    ++ SSSL  L  LE L L+ +   +  + 
Sbjct: 38  NPCTFDGVTC--RDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHI-NGSVS 94

Query: 146 SEIINLSRLSYLNLSHSSFFGQIPS--EILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203
                 + L+ L+LS +S  G + +   +     L  L++S N+     L  P   +   
Sbjct: 95  -GFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNT-----LDFPGKVSGGL 148

Query: 204 KLSNLETLDLGYVSIRSTIPHNLA---NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLD 260
           KL++LE LDL   SI                L  L++    + G +   +     L  LD
Sbjct: 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLD 206

Query: 261 LSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPW 320
           +S N     +P  +G+  +L+ LD+S N LSG+   +I     L+ L++S N+  G  P 
Sbjct: 207 VSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPP 265

Query: 321 SIVIGNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLI 379
                    LQ L    NKF+GE+   + G   +L  L +   +F G +P    + + L 
Sbjct: 266 L----PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLE 321

Query: 380 TLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNL 439
           +L LS N++ G + +D LL  ++ L+VL LS N  S                 G      
Sbjct: 322 SLALSSNNFSGELPMDTLL-KMRGLKVLDLSFNEFS-----------------G------ 357

Query: 440 IEFPNFLKN-QHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVL 498
            E P  L N    L+ LDLSSN   G I   L       L  L L +N  TG        
Sbjct: 358 -ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTG-------- 408

Query: 499 PGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHN 558
                                                   +IP  L     L  L LS N
Sbjct: 409 ----------------------------------------KIPPTLSNCSELVSLHLSFN 428

Query: 559 NLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI 618
            LSG +P  LGS S KL  L L  N   G IP   M    L  + L  N   G IP  L 
Sbjct: 429 YLSGTIPSSLGSLS-KLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLS 487

Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678
           NC+ L ++ + +N++    P W+G L NL +L L +N F G I  P        L  +DL
Sbjct: 488 NCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNI--PAELGDCRSLIWLDL 545

Query: 679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYS-------- 730
           + N F G +P+  F     +     +  +Y+       +          ++         
Sbjct: 546 NTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLN 605

Query: 731 ---------LKMNN-KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN 780
                    +      G           +  + +S N   G IP  I ++  L +LNL +
Sbjct: 606 RLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGH 665

Query: 781 NNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQ 840
           N++ G IP  +G+L  L  LDLS+N   G+IPQ +  LT L   ++S+N L+GPIP+  Q
Sbjct: 666 NDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQ 725

Query: 841 FATFDNSSFESNSGLCGRPLSRECESDEAPTNEDH 875
           F TF  + F +N GLCG PL R   S+        
Sbjct: 726 FETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQ 760

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  320 bits (821), Expect = 8e-98
 Identities = 142/720 (19%), Positives = 234/720 (32%), Gaps = 92/720 (12%)

Query: 153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGL-ELQKPNFANLVEKLSNLETL 211
                + SH     Q+P ++    N+  L+L+ N    L  L   NF       S L +L
Sbjct: 5   SHEVADCSHLKLT-QVPDDLPT--NITVLNLTHNQ---LRRLPAANFTRY----SQLTSL 54

Query: 212 DLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELP 271
           D+G+ +I    P     L  L  L+L    L      +    + L  L L  N +     
Sbjct: 55  DVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKN 114

Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
                  +L  LDLS N LS     +   L +L+EL LS NK+       + I   + L+
Sbjct: 115 NPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLK 174

Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR---NLTQLITLDLSQNSY 388
            L+ +SN+           +  L  L +        +   L      T +  L LS +  
Sbjct: 175 KLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL 234

Query: 389 RGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKN 448
             T    FL +   NL +L LS N L+++                          +    
Sbjct: 235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVG------------------------NDSFAW 270

Query: 449 QHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTL 508
              L    L  N I       L      N+  LNL  +                      
Sbjct: 271 LPQLEYFFLEYNNIQHLFSHSLH--GLFNVRYLNLKRS------------------FTKQ 310

Query: 509 DLSSNNLQGPLPVPPS--RTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
            +S  +L           + + +L + +N   G   +    L +L+ L LS++  S L  
Sbjct: 311 SISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTS-LRT 369

Query: 566 RCLGSFSD----KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI-NC 620
               +F       L IL+L  N       + F     L ++DL  N     +        
Sbjct: 370 LTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGL 429

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
             +  + +  N+   +  +    +P+L  L+L+      +   P        L I+DLSN
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 681 NRFTGKLPSKSFLCWNAMKIVNTSD--LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQ 738
           N     +          ++I++     L  L                      K  N G 
Sbjct: 490 NNIAN-INDDMLEGLEKLEILDLQHNNLARLW---------------------KHANPGG 527

Query: 739 IMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 798
            + + K    L  + L SN FD +      +L  L++++L  NNL     S   N  +L+
Sbjct: 528 PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLK 587

Query: 799 SLDLSNNNFLGQIPQQL-VELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCG 857
           SL+L  N       +        L   ++  N           F  + N +  +   L  
Sbjct: 588 SLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSS 647

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  286 bits (734), Expect = 2e-85
 Identities = 152/775 (19%), Positives = 237/775 (30%), Gaps = 147/775 (18%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
           ++  L+L+++ L     ++    +   L  L++ FN   S   P     L  L  LNL H
Sbjct: 26  NITVLNLTHNQLRRLPAAN--FTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQH 82

Query: 162 SSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRST 221
           +              NL  L L  NS   ++       N   K  NL TLDL +  + ST
Sbjct: 83  NELSQLSDKTFAFCTNLTELHLMSNSIQKIK------NNPFVKQKNLITLDLSHNGLSST 136

Query: 222 IPHNLANLSSLTFLSLHSCGLQGRIQSSLG--NLSKLLHLDLSLNELLGELPVSIGNLHS 279
                  L +L  L L +  +Q      L     S L  L+LS N++    P     +  
Sbjct: 137 KLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGR 196

Query: 280 LKKLDLSINNLSGELPTSIQ---NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
           L  L L+   L   L   +       S+  L LS ++LS     + +   +T L  LD +
Sbjct: 197 LFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLS 256

Query: 337 SNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF 396
            N  +   + S   L  LE   +   N       SL  L  +  L+L             
Sbjct: 257 YNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLK------------ 304

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
                ++    S+S   L  +                             +    L  L+
Sbjct: 305 -----RSFTKQSISLASLPKID------------------------DFSFQWLKCLEHLN 335

Query: 457 LSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPG-GKRFLLTLDLSSNNL 515
           +  N I G   +        NL  L+LS++  +                L  L+L+ N +
Sbjct: 336 MEDNDIPGIKSNMFT--GLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKI 393

Query: 516 QGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKL 575
                                          L  LE+L L  N +   L        + +
Sbjct: 394 SKI---------------------ESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENI 432

Query: 576 SILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQG--RIPRSLINCSKLEFLDIGDNQI 633
             + L  N +     N+F     L  + L     +     P        L  LD+ +N I
Sbjct: 433 FEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNI 492

Query: 634 RDIFPSWLGTLPNLTVLILQSNKFYGIIRE------PRIDCGFSKLRIIDLSNNRFTGKL 687
            +I    L  L  L +L LQ N    + +            G S L I++L +N F   +
Sbjct: 493 ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDE-I 551

Query: 688 PSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD 747
           P + F            DL  L+                                     
Sbjct: 552 PVEVF-----------KDLFELK------------------------------------- 563

Query: 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLG-NLTNLESLDLSNNN 806
               I L  N  + +  +   N   L+ LNL  N +        G    NL  LD+  N 
Sbjct: 564 ---IIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNP 620

Query: 807 FLGQIP-----QQLVELTFLEFFNVSDNYLTGPIP--QGRQFATFDNSSFESNSG 854
           F             +  T      +S +YL    P   G     FD SS + ++ 
Sbjct: 621 FDCTCESIAWFVNWINETHTNIPELSSHYLCNTPPHYHGFPVRLFDTSSCKDSAH 675

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  267 bits (684), Expect = 9e-79
 Identities = 98/633 (15%), Positives = 197/633 (31%), Gaps = 77/633 (12%)

Query: 68  WSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLV 127
                    A+W   +      +  GV  + + G V  L L      G +    ++ +L 
Sbjct: 49  QQGFGTQPGANWNFNKELDMWGAQPGVSLN-SNGRVTGLSLEGFGASGRV--PDAIGQLT 105

Query: 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
            LE L L  +  K +E       +S                 + +         DL  + 
Sbjct: 106 ELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDC 165

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQ 247
                 QK               +     +I + +   +  L+ L    + +        
Sbjct: 166 INSDPQQKS-IKKSSRITLKDTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
                       +    +      +   NL  L  +++       +LPT ++ L  ++ +
Sbjct: 224 CEAWEN-----ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLI 278

Query: 308 DLSFNKLSG------EFPWSIVIGNFTQLQSLDFTSNKF-SGELHASIGNLRSLEVLAIG 360
           +++ N+         ++          ++Q +    N   +  +  S+  ++ L +L   
Sbjct: 279 NVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECL 338

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420
                G    +  +  +L +L+L+ N               + +E LS + N L  +  +
Sbjct: 339 YNQLEG-KLPAFGSEIKLASLNLAYNQITEI--PANFCGFTEQVENLSFAHNKLKYIPNI 395

Query: 421 TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL--LDPST--- 475
                                     K+   +  +D S N I          LDP+    
Sbjct: 396 F-----------------------DAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432

Query: 476 QNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNS 535
            N+S++NLS+N ++ F ++L         L +++L  N L   +P              +
Sbjct: 433 INVSSINLSNNQISKFPKELF---STGSPLSSINLMGNMLTE-IP-------------KN 475

Query: 536 FIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK 595
            + +          L  + L  N L+ L      +    L  +DL + N F   P   + 
Sbjct: 476 SLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDL-SYNSFSKFPTQPLN 534

Query: 596 ESRLGMIDLSHNL------FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTV 649
            S L    + +             P  +  C  L  L IG N IR +        PN++V
Sbjct: 535 SSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEK---ITPNISV 591

Query: 650 LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
           L ++ N    I       C + +  +  L  ++
Sbjct: 592 LDIKDNPNISID--LSYVCPYIEAGMYMLFYDK 622

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  264 bits (676), Expect = 1e-77
 Identities = 102/737 (13%), Positives = 212/737 (28%), Gaps = 171/737 (23%)

Query: 113 LYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEI 172
           L G   S           W      D   ++    + +  R++ L+L      G++P  I
Sbjct: 42  LNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAI 101

Query: 173 LELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSL 232
            +L  L  L L  +     E                              P  ++   S 
Sbjct: 102 GQLTELEVLALGSHGEKVNER--------------------------LFGPKGISANMSD 135

Query: 233 TFLSLHSCGLQGRIQSSLG--NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNL 290
                     Q          + S L+   ++ +     +  S        ++    NN+
Sbjct: 136 EQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI 195

Query: 291 SGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGN 350
           +  +  ++  L  L +  +  +    E             ++ +    +          N
Sbjct: 196 TF-VSKAVMRLTKLRQFYMGNSPFVAENI-------CEAWENENSEYAQQYKTEDLKWDN 247

Query: 351 LRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL------KNL 404
           L+ L  + +  C    ++P+ L+ L ++  ++++ N      +L     +L      + +
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
           +++ +  N L                               L+    L +L+   N++ G
Sbjct: 308 QIIYIGYNNLKTFPV-----------------------ETSLQKMKKLGMLECLYNQLEG 344

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPS 524
           K+P++    S   L++LNL++N +T          G    +  L  + N L+        
Sbjct: 345 KLPAFG---SEIKLASLNLAYNQITEIPANFC---GFTEQVENLSFAHNKLK-------- 390

Query: 525 RTVNYLVSNNSFIGEIPSWL--CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA 582
                          IP+      +  +  +  S+N +  +                   
Sbjct: 391 --------------YIPNIFDAKSVSVMSAIDFSYNEIGSVDG----------------- 419

Query: 583 NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI------ 636
              F  +  T  K   +  I+LS+N             S L  +++  N + +I      
Sbjct: 420 -KNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLK 478

Query: 637 -FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCW 695
                      LT + L+ NK   +  + R       L  IDLS N F+   P+      
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTKLSDDFRA-TTLPYLVGIDLSYNSFSK-FPT------ 530

Query: 696 NAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS 755
              + +N+S LK                                        I       
Sbjct: 531 ---QPLNSSTLKGF-------------------------------------GIRNQRDAQ 550

Query: 756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQL 815
            NR     P  I     L  L + +N+++  +   +    N+  LD+ +N  +      +
Sbjct: 551 GNRTLREWPEGITLCPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISIDLSYV 607

Query: 816 VELTFLEFFNVSDNYLT 832
                   + +  +   
Sbjct: 608 CPYIEAGMYMLFYDKTQ 624

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  231 bits (592), Expect = 7e-66
 Identities = 98/634 (15%), Positives = 187/634 (29%), Gaps = 121/634 (19%)

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG--- 292
           +        +   SL +  ++  L L      G +P +IG L  L+ L L  +       
Sbjct: 63  NKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER 122

Query: 293 -ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL 351
              P  I   +S E+           F       +F+ L      S+     +  S    
Sbjct: 123 LFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT 182

Query: 352 RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSS 411
                +     N +  +  ++  LT+L    +  + +    E        +N E      
Sbjct: 183 LKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVA--ENICEAWENENSEYAQQYK 239

Query: 412 NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLL 471
                                               N   L  +++ +     K+P++L 
Sbjct: 240 T-----------------------------EDLKWDNLKDLTDVEVYNCPNLTKLPTFLK 270

Query: 472 DPSTQNLSALNLSHNLLTGFDQQLVVLP-----GGKRFLLTLDLSSNNLQGPLPVPPSRT 526
             +   +  +N++ N     +Q                +  + +  NNL+          
Sbjct: 271 --ALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT--------- 319

Query: 527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF 586
                        + + L K+  L +L   +N L G LP   GS   KL+ L+L  N   
Sbjct: 320 -----------FPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT 366

Query: 587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI--NCSKLEFLDIGDNQIRDI-------F 637
               N      ++  +  +HN  +  IP      + S +  +D   N+I  +        
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPL 425

Query: 638 PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNA 697
                   N++ + L +N+         +    S L  I+L  N  T  +P  S    N 
Sbjct: 426 DPTPFKGINVSSINLSNNQISKFP--KELFSTGSPLSSINLMGNMLTE-IPKNSLKDENE 482

Query: 698 MKIVNTSDLKYLQDVIS-------PKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILT 750
               NT  L  +   +          ++  +        +L                 L 
Sbjct: 483 -NFKNTYLLTSID--LRFNKLTKLSDDFRAT--------TLPY---------------LV 516

Query: 751 SIILSSNRFDGMIPTSIANLKGLQVLNLDN------NNLQGHIPSCLGNLTNLESLDLSN 804
            I LS N F    PT   N   L+   + N      N      P  +    +L  L + +
Sbjct: 517 GIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGS 575

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
           N+ + ++ +++     +   ++ DN         
Sbjct: 576 ND-IRKVNEKI--TPNISVLDIKDNPNISIDLSY 606

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  215 bits (549), Expect = 5e-60
 Identities = 69/548 (12%), Positives = 163/548 (29%), Gaps = 100/548 (18%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           +    +      +   S    +    +    N+   + +   ++ L++L    + +S F 
Sbjct: 162 IKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI--TFVSKAVMRLTKLRQFYMGNSPFV 219

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN 225
            +   E  E  N              +            L +L  +++      + +P  
Sbjct: 220 AENICEAWENENSEYAQQYKTEDLKWD-----------NLKDLTDVEVYNCPNLTKLPTF 268

Query: 226 LANLSSLTFLSLHSCGL--------QGRIQSSLGNLSKLLHLDLSLNELL-GELPVSIGN 276
           L  L  +  +++               +  +      K+  + +  N L    +  S+  
Sbjct: 269 LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQK 328

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
           +  L  L+   N L G+LP +  + + L  L+L++N+++   P +   G   Q+++L F 
Sbjct: 329 MKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITE-IPANF-CGFTEQVENLSFA 385

Query: 337 SNKFSG-ELHASIGNLRSLEVLAIGRCNFSG-------RIPSSLRNLTQLITLDLSQNSY 388
            NK           ++  +  +                 +  +      + +++LS N  
Sbjct: 386 HNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQI 445

Query: 389 RGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKN 448
                   L  +   L  ++L  N L+                  +   +L +     KN
Sbjct: 446 SKF--PKELFSTGSPLSSINLMGNMLT-----------------EIPKNSLKDENENFKN 486

Query: 449 QHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTL 508
            + L  +DL  N++   +       +   L  ++LS+N  + F  Q          L   
Sbjct: 487 TYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYNSFSKFPTQP----LNSSTLKGF 541

Query: 509 DLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCL 568
            + +                     N  + E P  +    SL  L +  N++        
Sbjct: 542 GIRNQRD---------------AQGNRTLREWPEGITLCPSLTQLQIGSNDIR------- 579

Query: 569 GSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628
                               +         + ++D+  N         +    +     +
Sbjct: 580 -------------------KVNEKIT--PNISVLDIKDNPNISIDLSYVCPYIEAGMYML 618

Query: 629 GDNQIRDI 636
             ++ +DI
Sbjct: 619 FYDKTQDI 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  170 bits (432), Expect = 1e-44
 Identities = 69/539 (12%), Positives = 150/539 (27%), Gaps = 106/539 (19%)

Query: 319 PWSIVIGNFTQLQSLDFTS--NKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT 376
            WS          + +F    + +  +   S+ +   +  L++     SGR+P ++  LT
Sbjct: 46  NWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLT 105

Query: 377 QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRS 436
           +L  L L  +  +   E  F    +                 K                 
Sbjct: 106 ELEVLALGSHGEKVN-ERLFGPKGISANMSDEQKQKMRMHYQK----------------- 147

Query: 437 CNLIEFPNFLKNQHHLML--LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ 494
                F ++   +    L    ++S+     I        T   + +    N +T   + 
Sbjct: 148 ----TFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR--ITLKDTQIGQLSNNITFVSKA 201

Query: 495 LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILV 554
           ++ L      L    + ++              N                  L  L  + 
Sbjct: 202 VMRLTK----LRQFYMGNSPFVAENICEAWENEN--SEYAQQYKTEDLKWDNLKDLTDVE 255

Query: 555 LSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIP 614
           + +      LP  L +   ++ ++++  N                  I         +  
Sbjct: 256 VYNCPNLTKLPTFLKALP-EMQLINVACNRG----------------ISGEQLKDDWQAL 298

Query: 615 RSLINCSKLEFLDIGDNQIRDI-FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL 673
                  K++ + IG N ++     + L  +  L +L    N+  G +          KL
Sbjct: 299 ADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAF---GSEIKL 355

Query: 674 RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKM 733
             ++L+ N+ T  +P+             T  ++ L           +            
Sbjct: 356 ASLNLAYNQITE-IPANFC--------GFTEQVENLS---------FA------------ 385

Query: 734 NNKGQIMTYDKVPDI-----LTSIILSSNRFDGM-------IPTSIANLKGLQVLNLDNN 781
           +N  ++     + D      +++I  S N    +       +  +      +  +NL NN
Sbjct: 386 HN--KLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNN 443

Query: 782 NLQGHIPSCLGNLTNLESLDLSNNNF-------LGQIPQQLVELTFLEFFNVSDNYLTG 833
            +           + L S++L  N         L    +       L   ++  N LT 
Sbjct: 444 QISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK 502

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  154 bits (392), Expect = 2e-39
 Identities = 52/523 (9%), Positives = 135/523 (25%), Gaps = 129/523 (24%)

Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
            +L+  +    G       N    + L      +  +   SL +  ++  L L      G
Sbjct: 40  DALNGKNWSQQGFGTQPGANWNFNKEL----DMWGAQPGVSLNSNGRVTGLSLEGFGASG 95

Query: 391 TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQH 450
              +   +  L  LEVL+L S+   +                       +  P  +    
Sbjct: 96  R--VPDAIGQLTELEVLALGSHGEKVN--------------------ERLFGPKGISANM 133

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
                             +       +L    ++ +      ++   +         +  
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRIT---LKDTQIGQ 190

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
            SNN+                        +   + +L  L    + ++            
Sbjct: 191 LSNNI----------------------TFVSKAVMRLTKLRQFYMGNSPFVAENICEA-- 226

Query: 571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630
                   +      + T    +     L  +++ +     ++P  L    +++ +++  
Sbjct: 227 ----WENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVAC 282

Query: 631 NQIRDI--------FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
           N+              +       + ++ +  N       E  +     KL +++   N+
Sbjct: 283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSL-QKMKKLGMLECLYNQ 341

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
             GKLP+            +   L  L                                 
Sbjct: 342 LEGKLPA----------FGSEIKLASLN-------------------------------- 359

Query: 743 DKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS--CLGNLTNLESL 800
                      L+ N+   +        + ++ L+  +N L+  IP+     +++ + ++
Sbjct: 360 -----------LAYNQITEIPANFCGFTEQVENLSFAHNKLKY-IPNIFDAKSVSVMSAI 407

Query: 801 DLSNNNF-------LGQIPQQLVELTFLEFFNVSDNYLTGPIP 836
           D S N            +     +   +   N+S+N ++    
Sbjct: 408 DFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPK 450

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 89.7 bits (223), Expect = 1e-18
 Identities = 30/260 (11%), Positives = 70/260 (26%), Gaps = 38/260 (14%)

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR----DIFPSWLGTLPNLTVLIL 652
            R+  + L      GR+P ++   ++LE L +G +  +       P  +    +      
Sbjct: 81  GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQK 140

Query: 653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDV 712
               +     +      FS L    ++++     +   S +     +I            
Sbjct: 141 MRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQI----GQLSNNIT 196

Query: 713 ISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG 772
              K              +++               L    + ++ F             
Sbjct: 197 FVSKA------------VMRLTK-------------LRQFYMGNSPFVAENICEAWEN-- 229

Query: 773 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
               N +             NL +L  +++ N   L ++P  L  L  ++  NV+ N   
Sbjct: 230 ---ENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI 286

Query: 833 GPIPQGRQFATFDNSSFESN 852
                   +    ++     
Sbjct: 287 SGEQLKDDWQALADAPVGEK 306

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.8 bits (148), Expect = 1e-09
 Identities = 15/105 (14%), Positives = 32/105 (30%), Gaps = 4/105 (3%)

Query: 755 SSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ---- 810
             + +      S+ +   +  L+L+     G +P  +G LT LE L L ++         
Sbjct: 65  ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124

Query: 811 IPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGL 855
            P+ +      E       +             F +   +  +  
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSD 169

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  259 bits (665), Expect = 2e-76
 Identities = 117/583 (20%), Positives = 194/583 (33%), Gaps = 59/583 (10%)

Query: 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
             + L+L+FN            +   L  L+LS              L +L +L L+ N 
Sbjct: 29  STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RI 246
              L             LS+L+ L     ++ S     + +L +L  L++    +Q  ++
Sbjct: 88  IQSLA------LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKL 141

Query: 247 QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK----KLDLSINNLSGELPTSIQNLV 302
                NL+ L HLDLS N++       +  LH +      LDLS+N ++   P + + + 
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI- 200

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE---LHASIGNLRSLEVLAI 359
            L +L L  N  S        I     L+       +F  E          L  L  L I
Sbjct: 201 RLHKLTLRNNFDSLNVM-KTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 259

Query: 360 GRCNFS------GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW 413
                +        I      LT + +  L   +     +  +        + L L +  
Sbjct: 260 EEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNF----GWQHLELVNCK 315

Query: 414 LSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDP 473
                      + ++ T    +  N     +       L  LDLS N +  K      D 
Sbjct: 316 FGQFPT-LKLKSLKRLTFTSNKGGNAFSEVDL----PSLEFLDLSRNGLSFKGCCSQSDF 370

Query: 474 STQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSN 533
            T +L  L+LS N +       + L      L  LD   +NL+                 
Sbjct: 371 GTTSLKYLDLSFNGVITMSSNFLGLEQ----LEHLDFQHSNLKQMSE------------- 413

Query: 534 NSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI-PNT 592
                   S    L +L  L +SH +            S  L +L +  N+F     P+ 
Sbjct: 414 -------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPDI 465

Query: 593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL 652
           F +   L  +DLS    +   P +  + S L+ L++  N    +       L +L VL  
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525

Query: 653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCW 695
             N      ++       S L  ++L+ N F      +SFL W
Sbjct: 526 SLNHIMTSKKQELQHF-PSSLAFLNLTQNDFACTCEHQSFLQW 567

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  254 bits (650), Expect = 3e-74
 Identities = 120/616 (19%), Positives = 208/616 (33%), Gaps = 92/616 (14%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            + + LDL +  +R    ++  +   L  L L  C +Q     +  +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
           +      +   L SL+KL     NL+      I +L +L+EL+++ N +   F       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFS 146

Query: 326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEV----LAIGRCNFSGRIPSSLRNLTQLITL 381
           N T L+ LD +SNK        +  L  + +    L +     +   P + + + +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
            L  N     + +   +  L  LEV  L          +                     
Sbjct: 206 TLRNNFDSLNV-MKTCIQGLAGLEVHRLVLGEFRNEGNLEKFD----------------- 247

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPST-QNLSALNLSHNLLTGFDQQLVVLPG 500
             + L+   +L + +     +   +   +   +   N+S+ +L    +            
Sbjct: 248 -KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDF-----S 301

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNL 560
                  L+L +       P    +++  L   ++  G   S    L SLE L LS N L
Sbjct: 302 YNFGWQHLELVNCKFGQ-FPTLKLKSLKRLTFTSNKGGNAFS-EVDLPSLEFLDLSRNGL 359

Query: 561 S--GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI 618
           S  G   +     +  L  LDL + N   T+ + F+   +L  +D  H+  +     S+ 
Sbjct: 360 SFKGCCSQSDFGTT-SLKYLDL-SFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVF 417

Query: 619 -NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
            +   L +LDI     R  F      L +L VL +  N F      P I      L  +D
Sbjct: 418 LSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLD 476

Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKG 737
           LS  +    L   +F           + L  LQ                           
Sbjct: 477 LSQCQLEQ-LSPTAF-----------NSLSSLQ--------------------------- 497

Query: 738 QIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TN 796
                         + +S N F  +       L  LQVL+   N++       L +  ++
Sbjct: 498 -------------VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 544

Query: 797 LESLDLSNNNFLGQIP 812
           L  L+L+ N+F     
Sbjct: 545 LAFLNLTQNDFACTCE 560

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  233 bits (597), Expect = 8e-67
 Identities = 133/681 (19%), Positives = 217/681 (31%), Gaps = 111/681 (16%)

Query: 158 NLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVS 217
                +F+ +IP  +    +  +LDLS N    L     +F +       L+ LDL    
Sbjct: 13  QCMELNFY-KIPDNLPF--STKNLDLSFNPLRHL--GSYSFFSF----PELQVLDLSRCE 63

Query: 218 IRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNL 277
           I++       +LS L+ L L    +Q     +   LS L  L      L       IG+L
Sbjct: 64  IQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHL 123

Query: 278 HSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ----S 332
            +LK+L+++ N + S +LP    NL +LE LDLS NK+   +     +    Q+     S
Sbjct: 124 KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLS 181

Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLSQNSYRGT 391
           LD + N  +     +   +R L  L +     S  +    ++ L  L    L    +R  
Sbjct: 182 LDLSLNPMNFIQPGAFKEIR-LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE 240

Query: 392 MEL-DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQH 450
             L  F   +L+ L  L++    L+ L                     L +  +      
Sbjct: 241 GNLEKFDKSALEGLCNLTIEEFRLAYL------------------DYYLDDIIDLFNCLT 282

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
           ++    L S  I                  L L +     F           + L  L  
Sbjct: 283 NVSSFSLVSVTIERVKDF----SYNFGWQHLELVNCKFGQFP------TLKLKSLKRLTF 332

Query: 511 SSNNLQGPLPVPPSRTVNYL-VSNN--SFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC 567
           +SN            ++ +L +S N  SF G          SL+ L LS N +  +    
Sbjct: 333 TSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNF 392

Query: 568 LGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL 626
           LG     L  LD + +N       + F+    L  +D+SH   +          S LE L
Sbjct: 393 LGLEQ--LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

Query: 627 DIGDNQIRD-IFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
            +  N  ++   P     L NLT L L   +   +   P      S L+++++S+N F  
Sbjct: 451 KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLS--PTAFNSLSSLQVLNMSHNNFFS 508

Query: 686 KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745
            L +  +             L  LQ                                   
Sbjct: 509 -LDTFPY-----------KCLNSLQ----------------------------------- 521

Query: 746 PDILTSIILSSNRFDGMIPTSIANL-KGLQVLNLDNNNLQGHIPSC--LGNLTNLESLDL 802
                 +  S N         + +    L  LNL  N+          L  + +   L +
Sbjct: 522 -----VLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 576

Query: 803 SNNNFLGQIPQQLVELTFLEF 823
                    P     +  L  
Sbjct: 577 EVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  231 bits (592), Expect = 4e-66
 Identities = 114/624 (18%), Positives = 194/624 (31%), Gaps = 113/624 (18%)

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
             IP NL    S   L L    L+     S  +  +L  LDLS  E+      +  +L  
Sbjct: 20  YKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
           L  L L+ N +      +   L SL++L      L+    + I  G+   L+ L+   N 
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNL 135

Query: 340 F-SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
             S +L     NL +LE L +          + LR L Q+  L+LS              
Sbjct: 136 IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS-------------- 181

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
                   L LS N ++ +                         P   K    L  L L 
Sbjct: 182 --------LDLSLNPMNFIQ------------------------PGAFKEIR-LHKLTLR 208

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
           +N     +    +      L    L                     L  L +    L   
Sbjct: 209 NNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-- 265

Query: 519 LPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSIL 578
                          + ++ +I      L ++    L    +  +      S++     L
Sbjct: 266 -------------YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKD---FSYNFGWQHL 309

Query: 579 DLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI--RDI 636
           +L  N  FG  P   +K     +  L+    +G    S ++   LEFLD+  N +  +  
Sbjct: 310 EL-VNCKFGQFPTLKLK----SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGC 364

Query: 637 FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWN 696
                    +L  L L  N    +        G  +L  +D  ++          FL   
Sbjct: 365 CSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQMSEFSVFL--- 418

Query: 697 AMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDI--LTSIIL 754
                +  +L YL          +S            +   ++        +  L  + +
Sbjct: 419 -----SLRNLIYL---------DIS------------HTHTRVAFNGIFNGLSSLEVLKM 452

Query: 755 SSNRFDGMI-PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813
           + N F     P     L+ L  L+L    L+   P+   +L++L+ L++S+NNF      
Sbjct: 453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 512

Query: 814 QLVELTFLEFFNVSDNYLTGPIPQ 837
               L  L+  + S N++     Q
Sbjct: 513 PYKCLNSLQVLDYSLNHIMTSKKQ 536

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  206 bits (525), Expect = 5e-57
 Identities = 106/564 (18%), Positives = 178/564 (31%), Gaps = 67/564 (11%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           LDLS   +        +   L HL  L L  N    S        LS L  L    ++  
Sbjct: 57  LDLSRCEIQTIE--DGAYQSLSHLSTLILTGNPI-QSLALGAFSGLSSLQKLVAVETNLA 113

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN 225
                 I  L  L  L+++ N      +Q          L+NLE LDL    I+S    +
Sbjct: 114 SLENFPIGHLKTLKELNVAHNL-----IQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168

Query: 226 LANLSSLTF---------------------------LSLHSCGLQGRI-QSSLGNLSKLL 257
           L  L  +                             L+L +      + ++ +  L+ L 
Sbjct: 169 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLE 228

Query: 258 HLDLSLNELLGE---LPVSIGNLHSLKKLDLSINNLS------GELPTSIQNLVSLEELD 308
              L L E   E          L  L  L +    L+       ++      L ++    
Sbjct: 229 VHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFS 288

Query: 309 LSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRI 368
           L    +     +S         Q L+  + KF       + +L+ L        +  G  
Sbjct: 289 LVSVTIERVKDFS----YNFGWQHLELVNCKFGQFPTLKLKSLKRLTFT-----SNKGGN 339

Query: 369 PSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQK 428
             S  +L  L  LDLS+N                +L+ L LS N +  ++          
Sbjct: 340 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ-- 397

Query: 429 FTVVGLRSCNLIEF--PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
              +  +  NL +    +   +  +L+ LD+S               S  +L  L ++ N
Sbjct: 398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS--SLEVLKMAGN 455

Query: 487 LLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP--VPPSRTVNYL-VSNNSFIGEIPSW 543
                   L  +    R L  LDLS   L+   P       ++  L +S+N+F       
Sbjct: 456 SFQENF--LPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 513

Query: 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKE--SRLGM 601
              L+SL++L  S N++     + L  F   L+ L+L  N+F  T  +    +       
Sbjct: 514 YKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQ 573

Query: 602 IDLSHNLFQGRIPRSLINCSKLEF 625
           + +     +   P        L  
Sbjct: 574 LLVEVERMECATPSDKQGMPVLSL 597

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  177 bits (451), Expect = 4e-47
 Identities = 97/452 (21%), Positives = 150/452 (33%), Gaps = 53/452 (11%)

Query: 104 MKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS 163
           + LDLS + +      +   FK + L  L L  N    + + + I  L+ L    L    
Sbjct: 180 LSLDLSLNPMNFIQPGA---FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236

Query: 164 FFGQIPSEILE---LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS 220
           F  +   E  +   L  L +L +       L+    +  +L   L+N+ +  L  V+I  
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-- 294

Query: 221 TIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL 280
               + +       L L +C         L +L +L                S  +L SL
Sbjct: 295 ERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAF-----SEVDLPSL 349

Query: 281 KKLDLSINNLS--GELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           + LDLS N LS  G    S     SL+ LDLSFN +              QL+ LDF  +
Sbjct: 350 EFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN---FLGLEQLEHLDFQHS 406

Query: 339 KFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL 397
                   S+  +LR+L  L I   +           L+ L  L ++ NS++     D  
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI- 465

Query: 398 LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDL 457
              L+NL  L LS   L  L+                        P    +   L +L++
Sbjct: 466 FTELRNLTFLDLSQCQLEQLS------------------------PTAFNSLSSLQVLNM 501

Query: 458 SSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG 517
           S N                +L  L+ S N +    +Q   L      L  L+L+ N+   
Sbjct: 502 SHNNFFSLDTFPY--KCLNSLQVLDYSLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFAC 557

Query: 518 PLPVPP-----SRTVNYLVSNNSFIGEIPSWL 544
                            LV         PS  
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATPSDK 589

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  152 bits (385), Expect = 1e-38
 Identities = 88/536 (16%), Positives = 143/536 (26%), Gaps = 111/536 (20%)

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365
                           I        ++LD + N        S  +   L+VL + RC   
Sbjct: 11  TYQCMELNFY-----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ 65

Query: 366 GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
                + ++L+ L TL L+ N  +           L +L+ L      L+ L        
Sbjct: 66  TIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLVAVETNLASLE------- 116

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
                               + +   L  L+++ N I            T NL  L+LS 
Sbjct: 117 -----------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSS 158

Query: 486 NLLTGFDQQ-LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL 544
           N +       L VL       L+LDLS N                       +  I    
Sbjct: 159 NKIQSIYCTDLRVLHQMPLLNLSLDLSLN----------------------PMNFIQPGA 196

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
            K   L  L L +N  S  + +        L +  L    F               +   
Sbjct: 197 FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN----------LEKF 246

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
             +  +G     L N +  EF     +   D        L N++   L S     +    
Sbjct: 247 DKSALEG-----LCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
                    + ++L N +F    P+                    +   +  E  L    
Sbjct: 302 ----YNFGWQHLELVNCKFGQ-FPTLKLKSLK------RLTFTSNKGGNAFSEVDLPS-- 348

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR--FDGMIPTSIANLKGLQVLNLDNNN 782
                                   L  + LS N   F G    S      L+ L+L  N 
Sbjct: 349 ------------------------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 783 LQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPIPQ 837
           +   + S    L  LE LD  ++N          + L  L + ++S  +       
Sbjct: 385 VIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNG 439

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  252 bits (646), Expect = 1e-71
 Identities = 112/654 (17%), Positives = 207/654 (31%), Gaps = 80/654 (12%)

Query: 45  ALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSE--NTGH 102
           AL    E+L       +++ YY  +      + +W     N +   W      +  N G 
Sbjct: 273 ALKAIWEALD-----GKNWRYYSGTINNTIHSLNWNF---NKELDMWGDQPGVDLDNNGR 324

Query: 103 VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHS 162
           V  L L+     G +    ++ +L  L+ L+   +    S        L+        H 
Sbjct: 325 VTGLSLAGFGAKGRV--PDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHR 382

Query: 163 SFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTI 222
                    +     L   DL  ++       KP   +    L + +  +L      + I
Sbjct: 383 IRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRI--TFI 440

Query: 223 PHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK 282
              +  L+ L  +   +        +           +    +      +S  NL  L  
Sbjct: 441 SKAIQRLTKLQIIYFANSPF-----TYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTD 495

Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342
           ++L       +LP  + +L  L+ L+++ N+                             
Sbjct: 496 VELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTR---------------- 539

Query: 343 ELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLSQNSYRGTMELDFL--LV 399
            L         +++  +G  N      S SL+ + +L  LD   N       +  L    
Sbjct: 540 -LADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNK------VRHLEAFG 592

Query: 400 SLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN--FLKNQHHLMLLDL 457
           +   L  L L  N +  + +     T Q    +G     L   PN    K+ + +  +D 
Sbjct: 593 TNVKLTDLKLDYNQIEEIPEDFCAFTDQ-VEGLGFSHNKLKYIPNIFNAKSVYVMGSVDF 651

Query: 458 SSNRIHG---KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNN 514
           S N+I      I   + D    N S + LS+N +  F  +L         + T+ LS+N 
Sbjct: 652 SYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELF---ATGSPISTIILSNNL 708

Query: 515 LQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDK 574
           +   +P              + +            L  + L  N L+ L      +    
Sbjct: 709 MTS-IP-------------ENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPY 754

Query: 575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL------FQGRIPRSLINCSKLEFLDI 628
           LS +D+ + N F + P   +  S+L    + H           + P  +  C  L  L I
Sbjct: 755 LSNMDV-SYNCFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQI 813

Query: 629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
           G N IR +        P L +L +  N    I  +    C + +  +  L  ++
Sbjct: 814 GSNDIRKVDEK---LTPQLYILDIADNPNISI--DVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  229 bits (585), Expect = 2e-63
 Identities = 109/719 (15%), Positives = 197/719 (27%), Gaps = 175/719 (24%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           LD  N   Y    +++       L W      D    +   ++ N  R++ L+L+     
Sbjct: 281 LDGKNWRYYSGTINNTIH----SLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAK 336

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN 225
           G++P  I +L  L  L                        ++ ET+           P  
Sbjct: 337 GRVPDAIGQLTELKVLSFG---------------------THSETVSGRLFGDEELTPDM 375

Query: 226 LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDL 285
                    +      L          L+    L  ++N      P+   +  SLK   +
Sbjct: 376 SEERKHRIRMHYKKMFL-----DYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQI 430

Query: 286 S-INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
             + N    +  +IQ L  L+ +  + +  +               +  +    K     
Sbjct: 431 GNLTNRITFISKAIQRLTKLQIIYFANSPFTY-------DNIAVDWEDANSDYAKQYENE 483

Query: 345 HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL 404
             S  NL+ L  + +  C    ++P  L +L +L +L+++ N                  
Sbjct: 484 ELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACN------------------ 525

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
                                  +         +     +       + +  +  N +  
Sbjct: 526 -----------------------RGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE 562

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP--GGKRFLLTLDLSSNNLQGPLPVP 522
             P+         L  L+  HN +         L   G    L  L L  N ++      
Sbjct: 563 -FPASASLQKMVKLGLLDCVHNKVR-------HLEAFGTNVKLTDLKLDYNQIE------ 608

Query: 523 PSRTVNYLVSNNSFIGEIPSWLCK-LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLR 581
                           EIP   C   D +E L  SHN L  +           +  +D  
Sbjct: 609 ----------------EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFS 652

Query: 582 ANNFFGTIPNTF-----MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI 636
            N       N        K      + LS+N  Q          S +  + + +N +  I
Sbjct: 653 YNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSI 712

Query: 637 -------FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689
                            LT + L+ NK   +  + R       L  +D+S N F+   P+
Sbjct: 713 PENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA-TTLPYLSNMDVSYNCFSS-FPT 770

Query: 690 KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDIL 749
           +          +N+S LK                                        I 
Sbjct: 771 Q---------PLNSSQLKAF-------------------------------------GIR 784

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
                  NR     PT I     L  L + +N+++  +   L     L  LD+++N  +
Sbjct: 785 HQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  181 bits (462), Expect = 2e-47
 Identities = 88/642 (13%), Positives = 177/642 (27%), Gaps = 135/642 (21%)

Query: 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
           E LD       S   +N  +  +  F +        +    L N  ++  L L+     G
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFT 328
            +P +IG L  LK L    ++ +          ++ +  +   +++   +   + +    
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYK-KMFLDYDQ 396

Query: 329 QLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSY 388
           +L   D   +  +                             S  +L      +L+    
Sbjct: 397 RLNLSDLLQDAINRNP------------------EMKPIKKDSRISLKDTQIGNLTNRIT 438

Query: 389 RGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE-FPNFLK 447
                +   +  L  L+++  +++  +          +              E       
Sbjct: 439 ----FISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN------SDYAKQYENEELSWS 488

Query: 448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLT 507
           N   L  ++L +     ++P +L      +L  L                         +
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFL-----YDLPELQ------------------------S 519

Query: 508 LDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC 567
           L+++ N       +    T             +         ++I  + +NNL       
Sbjct: 520 LNIACNRGISAAQLKADWT------------RLADDEDTGPKIQIFYMGYNNLEEFPASA 567

Query: 568 LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL-INCSKLEFL 626
                 KL +LD   N         F    +L  + L +N  +  IP        ++E L
Sbjct: 568 SLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGL 624

Query: 627 DIGDNQIRDIFPSW-LGTLPNLTVLILQSNKFYGIIRE---PRIDCGFSKLRIIDLSNNR 682
               N+++ I   +   ++  +  +    NK     R       D        + LS N 
Sbjct: 625 GFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE 684

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
                P++ F           +    +  +I      LS            NN       
Sbjct: 685 IQK-FPTELF-----------ATGSPISTII------LS------------NNL------ 708

Query: 743 DKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS--CLGNLTNLESL 800
                 +TSI             +  N   L  ++L  N L   +        L  L ++
Sbjct: 709 ------MTSI---PENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNM 758

Query: 801 DLSNNNFLGQIPQQLVELTFLEFFN------VSDNYLTGPIP 836
           D+S N      P Q +  + L+ F          N +    P
Sbjct: 759 DVSYNC-FSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWP 799

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  148 bits (375), Expect = 8e-37
 Identities = 61/410 (14%), Positives = 121/410 (29%), Gaps = 69/410 (16%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS--------SEIPSEIINLSRLSY 156
            ++L N      +     L+ L  L+ LN+A N   S        + +  +     ++  
Sbjct: 495 DVELYNCPNMTQL--PDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQI 552

Query: 157 LNLSHSSFFG-QIPSEILELVNLVSLDLSLNSGYGLELQK-PNFANLVEKLSNLETLDLG 214
             + +++       + + ++V L  LD   N      ++    F         L  L L 
Sbjct: 553 FYMGYNNLEEFPASASLQKMVKLGLLDCVHNK-----VRHLEAFGTN----VKLTDLKLD 603

Query: 215 YVSIRSTIPHNL-ANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGE--- 269
           Y  I   IP +  A    +  L      L+      +  ++  +  +D S N++  E   
Sbjct: 604 YNQI-EEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRN 662

Query: 270 --LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG-----EFPWSI 322
               +      +   + LS N +             +  + LS N ++        P   
Sbjct: 663 ISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDG 722

Query: 323 VIGNFTQLQSLDFTSNKFSGELHASI--GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT 380
              N   L ++D   NK +  L        L  L  + +    FS   P+   N +QL  
Sbjct: 723 NYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKA 780

Query: 381 LDLSQN----SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRS 436
             +         R   +    + +  +L  L + SN +  +                   
Sbjct: 781 FGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKV------------------- 821

Query: 437 CNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                          L +LD++ N       + +       +  L     
Sbjct: 822 -----DEKLTPQ---LYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 97.6 bits (243), Expect = 7e-21
 Identities = 46/353 (13%), Positives = 98/353 (27%), Gaps = 69/353 (19%)

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSN--NSFIGEIPSWLCKLDSLEILVLSHNN 559
           K     LD  +             ++N+  +   + +  +    L     +  L L+   
Sbjct: 275 KAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFG 334

Query: 560 LSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPR-SLI 618
             G +P  +G  + +L +L    ++   +      +E    M +   +  +    +  L 
Sbjct: 335 AKGRVPDAIGQLT-ELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLD 393

Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678
              +L   D+  + I       +  +   + + L+  +                   I  
Sbjct: 394 YDQRLNLSDLLQDAINRN--PEMKPIKKDSRISLKDTQ-------------------IGN 432

Query: 679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQ 738
             NR T  +            I   + L+ +                        +    
Sbjct: 433 LTNRITF-ISKA---------IQRLTKLQII--------------------YFANSP--- 459

Query: 739 IMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 798
             TYD +            +       S +NLK L  + L N      +P  L +L  L+
Sbjct: 460 -FTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQ 518

Query: 799 SLDLSNNNF---------LGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFA 842
           SL+++ N             ++         ++ F +  N L    P      
Sbjct: 519 SLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEE-FPASASLQ 570

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 94.9 bits (236), Expect = 5e-20
 Identities = 36/226 (15%), Positives = 75/226 (33%), Gaps = 26/226 (11%)

Query: 106 LDLSN---SCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH- 161
           +D S         +I+ S   +K ++   + L++N+ +           S +S + LS+ 
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKF-PTELFATGSPISTIILSNN 707

Query: 162 ------SSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGY 215
                  +              L ++DL  N      L   +       L  L  +D+ Y
Sbjct: 708 LMTSIPENSLKPKDGNYKNTYLLTTIDLRFNK-----LTSLSDDFRATTLPYLSNMDVSY 762

Query: 216 VSIRSTIPHNLANLSSLTFLSL------HSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE 269
               S+ P    N S L    +          +  +  + +     L+ L +  N++  +
Sbjct: 763 NCF-SSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RK 820

Query: 270 LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315
           +   +     L  LD++ N       TS+   +      L ++K  
Sbjct: 821 VDEKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ 864

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 91.9 bits (228), Expect = 4e-19
 Identities = 42/291 (14%), Positives = 85/291 (29%), Gaps = 45/291 (15%)

Query: 576 SILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRD 635
             LD +   ++    N  +        +   +++  +    L N  ++  L +     + 
Sbjct: 279 EALDGKNWRYYSGTINNTIHSLNWNF-NKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKG 337

Query: 636 IFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCW 695
             P  +G L  L VL   ++      R    +       + +   +R             
Sbjct: 338 RVPDAIGQLTELKVLSFGTHSETVSGRLFGDEE--LTPDMSEERKHRIRMHYKKMFL--- 392

Query: 696 NAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS 755
           +  + +N SDL                     D   +      I    ++    T I   
Sbjct: 393 DYDQRLNLSDL-------------------LQDAINRNPEMKPIKKDSRISLKDTQIGNL 433

Query: 756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQG-------------------HIPSCLGNLTN 796
           +NR    I  +I  L  LQ++   N+                       +      NL +
Sbjct: 434 TNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKD 492

Query: 797 LESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNS 847
           L  ++L N   + Q+P  L +L  L+  N++ N           +    + 
Sbjct: 493 LTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADD 543

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  230 bits (589), Expect = 9e-66
 Identities = 108/612 (17%), Positives = 207/612 (33%), Gaps = 93/612 (15%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
            ++ E L+  +  + +      + L +LTFL L  C +    + +  +  +L  L L+ N
Sbjct: 32  PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
            L+     ++    +LK L      +S      + N  +LE L L  N +S         
Sbjct: 92  PLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--G 149

Query: 325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG-RCNFSGRIPSSLRNLTQLITLDL 383
               +L+ LDF +N         + +L+    L++    N    I     +     +L+ 
Sbjct: 150 FPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNF 209

Query: 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
                   +       ++++L + +        ++              GL   ++    
Sbjct: 210 GGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFE---------GLCEMSVES-- 258

Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKR 503
                      ++L  +       +     S   L  L+L+   L+     LV L     
Sbjct: 259 -----------INLQKHYFFNISSNTFHCFS--GLQELDLTATHLSELPSGLVGLS---- 301

Query: 504 FLLTLDLSSNNLQGPLPVP----PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNN 559
            L  L LS+N  +    +     PS T   +  N   +      L  L++L  L LSH++
Sbjct: 302 TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDD 361

Query: 560 LSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL 617
           +      C     +   L  L+L  N         F +  +L ++DL+    + +  +S 
Sbjct: 362 IET-SDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSP 420

Query: 618 I-NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII-REPRIDCGFSKLRI 675
             N   L+ L++  + +          LP L  L LQ N F     ++        +L I
Sbjct: 421 FQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEI 480

Query: 676 IDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNN 735
           + LS    +  +   +F           + LK +                          
Sbjct: 481 LVLSFCDLSS-IDQHAF-----------TSLKMMN------------------------- 503

Query: 736 KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 795
                           + LS NR       ++++LKG+  LNL +N++   +PS L  L+
Sbjct: 504 ---------------HVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILS 547

Query: 796 NLESLDLSNNNF 807
              +++L  N  
Sbjct: 548 QQRTINLRQNPL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  229 bits (585), Expect = 4e-65
 Identities = 108/542 (19%), Positives = 182/542 (33%), Gaps = 28/542 (5%)

Query: 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
             E L  +FN    +   +    L  L++L+L+    +            L +L L+ N 
Sbjct: 34  STECLEFSFNVL-PTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQ 247
              +          +     L+ L      I S     L N  +L  L L S  +     
Sbjct: 93  LIFMA------ETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKL 146

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLS-GELPTSIQNLVSLEE 306
                  KL  LD   N +       + +L     L L++N      +     +    + 
Sbjct: 147 PKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQS 206

Query: 307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLR--SLEVLAIGRCNF 364
           L+    +        +       L    F          A    L   S+E + + +  F
Sbjct: 207 LNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF 266

Query: 365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVT-SN 423
                ++    + L  LDL+        EL   LV L  L+ L LS+N    L +++ SN
Sbjct: 267 FNISSNTFHCFSGLQELDLTATHLS---ELPSGLVGLSTLKKLVLSANKFENLCQISASN 323

Query: 424 TTSQKFTVVGLRSCNLI--EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSAL 481
             S   T + ++            L+N  +L  LDLS + I       L   +  +L +L
Sbjct: 324 FPS--LTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSL 381

Query: 482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV----SNNSFI 537
           NLS+N       +          L  LDL+   L+      P + ++ L     S++   
Sbjct: 382 NLSYNEPLSLKTEA---FKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLD 438

Query: 538 GEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMK 595
                    L +L+ L L  N+      +   S     +L IL L   +      + F  
Sbjct: 439 ISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTS 498

Query: 596 ESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
              +  +DLSHN        +L +   + +L++  N I  I PS L  L     + L+ N
Sbjct: 499 LKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQN 557

Query: 656 KF 657
             
Sbjct: 558 PL 559

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  211 bits (540), Expect = 4e-59
 Identities = 99/589 (16%), Positives = 191/589 (32%), Gaps = 72/589 (12%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
             +     L  E+P ++   +S + L+ S N L     T+   L++L  LDL+  ++   
Sbjct: 16  TYNCENLGL-NEIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ 377
                   +  +L +L  T+N        ++   ++L+ L   +   S      L N   
Sbjct: 73  HE--DTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130

Query: 378 LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVT-SNTTSQKFTVVGLRS 436
           L +L L  N               + L+VL   +N +  L+K   S+        + L  
Sbjct: 131 LESLYLGSNHISSIKLPKGF--PTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNG 188

Query: 437 CNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLV 496
            ++        +      L+    +    I   L + + Q+L                 V
Sbjct: 189 NDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP-AV 247

Query: 497 VLPGGKRFLLTLDLSSNNLQGPLPV--PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILV 554
                +  + +++L  +               +  L    + + E+PS L  L +L+ LV
Sbjct: 248 FEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLV 307

Query: 555 LSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI-PNTFMKESRLGMIDLSHNLFQ--G 611
           LS N    L      +F   L+ L ++ N     +          L  +DLSH+  +   
Sbjct: 308 LSANKFENLCQISASNFP-SLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSD 366

Query: 612 RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671
                L N S L+ L++  N+   +        P L +L L   +               
Sbjct: 367 CCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKD-AQSPFQNLH 425

Query: 672 KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSL 731
            L++++LS+               + + I +      L                      
Sbjct: 426 LLKVLNLSH---------------SLLDISSEQLFDGLPA-------------------- 450

Query: 732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMI---PTSIANLKGLQVLNLDNNNLQGHIP 788
                            L  + L  N F         S+  L  L++L L   +L     
Sbjct: 451 -----------------LQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQ 493

Query: 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837
               +L  +  +DLS+N       + L  L  + + N++ N+++  +P 
Sbjct: 494 HAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPS 541

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  203 bits (518), Expect = 4e-56
 Identities = 106/519 (20%), Positives = 176/519 (33%), Gaps = 32/519 (6%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           LDL+   +Y     +        L+ L L  N        + +     L +L    +   
Sbjct: 62  LDLTRCQIYWIHEDT--FQSQHRLDTLVLTANPL-IFMAETALSGPKALKHLFFIQTGIS 118

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN 225
                 +     L SL L  N    ++L  P           L+ LD    +I      +
Sbjct: 119 SIDFIPLHNQKTLESLYLGSNHISSIKL--PKGFPT----EKLKVLDFQNNAIHYLSKED 172

Query: 226 LANLSSLTFLSLHSCGLQ-GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGN--LHSLKK 282
           +++L   T LSL+  G     I+    + +    L+    + L  +   + N  + SL  
Sbjct: 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWL 232

Query: 283 LDLSINNLSGELPTSIQNL--VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
                 +     P   + L  +S+E ++L  +        +     F+ LQ LD T+   
Sbjct: 233 GTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTF--HCFSGLQELDLTATHL 290

Query: 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVS 400
           S EL + +  L +L+ L +    F      S  N   L  L +  N+ R  +    L  +
Sbjct: 291 S-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLE-N 348

Query: 401 LKNLEVLSLSSNWLSLLTKVTSNTTS-QKFTVVGLRSCNLIEF-PNFLKNQHHLMLLDLS 458
           L+NL  L LS + +           +      + L     +       K    L LLDL+
Sbjct: 349 LENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
             R+  K            L  LNLSH+LL    +QL     G   L  L+L  N+    
Sbjct: 409 FTRLKVKDAQSPFQNLH-LLKVLNLSHSLLDISSEQLF---DGLPALQHLNLQGNHFPKG 464

Query: 519 LPVPPS-----RTVNYL-VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS 572
                +       +  L +S              L  +  + LSHN L+      L    
Sbjct: 465 NIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHL- 523

Query: 573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQG 611
            K   L+L +N+    +P+     S+   I+L  N    
Sbjct: 524 -KGIYLNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  183 bits (466), Expect = 4e-49
 Identities = 93/539 (17%), Positives = 173/539 (32%), Gaps = 92/539 (17%)

Query: 305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364
           +  +     L+ E P ++        + L+F+ N      + +   L +L  L + RC  
Sbjct: 15  KTYNCENLGLN-EIPGTL----PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQI 69

Query: 365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT 424
                 + ++  +L TL L+ N        +  L   K L+ L      +S +       
Sbjct: 70  YWIHEDTFQSQHRLDTLVLTAN--PLIFMAETALSGPKALKHLFFIQTGISSI------- 120

Query: 425 TSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484
                                L NQ  L  L L SN I            T+ L  L+  
Sbjct: 121 -----------------DFIPLHNQKTLESLYLGSNHISSIKLPKGF--PTEKLKVLDFQ 161

Query: 485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ----GPLPVPPSRTVNYLVSNNSFIGEI 540
           +N +    ++ +         L+L+L+ N++     G       +++N+  + N  +   
Sbjct: 162 NNAIHYLSKEDMSSLQQAT-NLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFK 220

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD-KLSILDLRANNFFGTIPNTFMKESRL 599
                 + SL +      +   + P       +  +  ++L+ + FF    NTF   S L
Sbjct: 221 GLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGL 280

Query: 600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659
             +DL+       +P  L+  S L+ L +  N+  ++        P+LT L ++ N    
Sbjct: 281 QELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL 719
            +           LR +DLS++           L   +                      
Sbjct: 340 EL-GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH--------------------- 377

Query: 720 LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
                                        L S+ LS N    +   +      L++L+L 
Sbjct: 378 -----------------------------LQSLNLSYNEPLSLKTEAFKECPQLELLDLA 408

Query: 780 NNNLQGHIP-SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837
              L+     S   NL  L+ L+LS++       Q    L  L+  N+  N+      Q
Sbjct: 409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  124 bits (313), Expect = 1e-29
 Identities = 57/394 (14%), Positives = 109/394 (27%), Gaps = 43/394 (10%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNN 514
            +  +  ++ +IP  L      +   L  S N+L                L  LDL+   
Sbjct: 17  YNCENLGLN-EIPGTLP----NSTECLEFSFNVLPTIQNTTF---SRLINLTFLDLTRCQ 68

Query: 515 LQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDK 574
           +                                  L+ LVL+ N L  +    L      
Sbjct: 69  IYW---------------------IHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK-A 106

Query: 575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR 634
           L  L                 +  L  + L  N              KL+ LD  +N I 
Sbjct: 107 LKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH 166

Query: 635 DIFPSWLGTLPNLTV--LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK-S 691
            +    + +L   T   L L  N   GI          +  + ++    +    +     
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGI---EPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 692 FLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDI--L 749
                ++ +    D+       +  E L    V + +      +    ++ +       L
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQ---KHYFFNISSNTFHCFSGL 280

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG 809
             + L++      +P+ +  L  L+ L L  N  +        N  +L  L +  N    
Sbjct: 281 QELDLTATHL-SELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRL 339

Query: 810 QI-PQQLVELTFLEFFNVSDNYLTGPIPQGRQFA 842
           ++    L  L  L   ++S + +        Q  
Sbjct: 340 ELGTGCLENLENLRELDLSHDDIETSDCCNLQLR 373

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  108 bits (272), Expect = 1e-24
 Identities = 55/223 (24%), Positives = 94/223 (42%), Gaps = 12/223 (5%)

Query: 98  ENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYL 157
           EN  ++ +LDLS+  +  S   +  L  L HL+ LNL++N+   S          +L  L
Sbjct: 347 ENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEP-LSLKTEAFKECPQLELL 405

Query: 158 NLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV 216
           +L+ +    +      + L  L  L+LS +              L + L  L+ L+L   
Sbjct: 406 DLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISS------EQLFDGLPALQHLNLQGN 459

Query: 217 SIRSTI---PHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVS 273
                     ++L  L  L  L L  C L    Q +  +L  + H+DLS N L      +
Sbjct: 460 HFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEA 519

Query: 274 IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
           + +L  +  L+L+ N++S  LP+ +  L     ++L  N L  
Sbjct: 520 LSHLKGIY-LNLASNHISIILPSLLPILSQQRTINLRQNPLDC 561

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 76.2 bits (188), Expect = 2e-14
 Identities = 39/257 (15%), Positives = 73/257 (28%), Gaps = 54/257 (21%)

Query: 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI 660
             +  +      IP +L   +  E L+   N +  I  +    L NLT L L   + Y I
Sbjct: 16  TYNCENLGLN-EIPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWI 72

Query: 661 IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF----------LCWNAMKIVNTSDLKYLQ 710
                      +L  + L+ N     +   +                +  ++   L   +
Sbjct: 73  --HEDTFQSQHRLDTLVLTANPLIF-MAETALSGPKALKHLFFIQTGISSIDFIPLHNQK 129

Query: 711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770
                                                 L S+ L SN    +        
Sbjct: 130 T-------------------------------------LESLYLGSNHISSIKLPKGFPT 152

Query: 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS-NNNFLGQIPQQLVELTFLEFFNVSDN 829
           + L+VL+  NN +       + +L    +L L+ N N +  I     +    +  N    
Sbjct: 153 EKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGT 212

Query: 830 YLTGPIPQGRQFATFDN 846
                I +G + +T  +
Sbjct: 213 QNLLVIFKGLKNSTIQS 229

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 64.7 bits (158), Expect = 8e-11
 Identities = 53/235 (22%), Positives = 81/235 (34%), Gaps = 44/235 (18%)

Query: 98  ENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYL 157
            N  H+  L+LS +        + +  +   LE L+LAF   K  +  S   NL  L  L
Sbjct: 373 RNLSHLQSLNLSYNEP--LSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVL 430

Query: 158 NLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPN-FANLV-------------- 202
           NLSHS            L  L  L+L  N      +QK N    L               
Sbjct: 431 NLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490

Query: 203 ------EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL 256
                   L  +  +DL +  + S+    L++L  +  L+L S  +   + S L  LS+ 
Sbjct: 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSLLPILSQQ 549

Query: 257 LHLDLSLNEL------------LGELPVSIGNL--------HSLKKLDLSINNLS 291
             ++L  N L              E    + +           L+ + LS   LS
Sbjct: 550 RTINLRQNPLDCTCSNIYFLEWYKENMQKLEDTEDTLCENPPLLRGVRLSDVTLS 604

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 60.0 bits (146), Expect = 2e-09
 Identities = 35/232 (15%), Positives = 63/232 (27%), Gaps = 39/232 (16%)

Query: 626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
            +  +  + +I P  L    +   L    N    I            L  +DL+  +   
Sbjct: 17  YNCENLGLNEI-PGTL--PNSTECLEFSFNVLPTIQ--NTTFSRLINLTFLDLTRCQIYW 71

Query: 686 KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745
            +   +F         +   L  L          L+             N    M    +
Sbjct: 72  -IHEDTF--------QSQHRLDTLV---------LT------------ANPLIFMAETAL 101

Query: 746 PDI--LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 803
                L  +         +    + N K L+ L L +N++             L+ LD  
Sbjct: 102 SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQ 161

Query: 804 NNNFLGQIPQQLVELTFLE--FFNVSDNYLTGPIPQGRQFATFDNSSFESNS 853
           NN       + +  L        N++ N + G  P     A F + +F    
Sbjct: 162 NNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQ 213

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  214 bits (547), Expect = 4e-63
 Identities = 95/356 (26%), Positives = 149/356 (41%), Gaps = 60/356 (16%)

Query: 37  LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCC--SWDGV 94
           LC+  +  ALLQ K+ L  N                    +SW P     DCC  +W GV
Sbjct: 2   LCNPQDKQALLQIKKDLG-NP----------------TTLSSWLP---TTDCCNRTWLGV 41

Query: 95  ECSE--NTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLS 152
            C     T  V  LDLS   L       SSL  L +L +L +   +     IP  I  L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLD 212
           +L YL ++H++  G IP  + ++  LV+LD S N+  G                      
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSG---------------------- 139

Query: 213 LGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLL-HLDLSLNELLGELP 271
                   T+P ++++L +L  ++     + G I  S G+ SKL   + +S N L G++P
Sbjct: 140 --------TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIP 191

Query: 272 VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQ 331
            +  NL +L  +DLS N L G+      +  + +++ L+ N L+ +      +G    L 
Sbjct: 192 PTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLN 247

Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS 387
            LD  +N+  G L   +  L+ L  L +   N  G IP    NL +      + N 
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNK 302

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  198 bits (506), Expect = 2e-57
 Identities = 84/339 (24%), Positives = 123/339 (36%), Gaps = 71/339 (20%)

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLR-ANNFFGT 588
            N +++G +     +   +  L LS  NL     +P  L +    L+ L +   NN  G 
Sbjct: 34  CNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGP 92

Query: 589 IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648
           IP    K ++L  + ++H    G IP  L     L  LD   N +    P  + +LPNL 
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152

Query: 649 VLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708
            +                              NR +G +P              +     
Sbjct: 153 GI--------------------------TFDGNRISGAIPDSYGSF--------SKLFTS 178

Query: 709 LQDVISPKEWLLSDEVATYDYSLKMNN-KGQIMTYDKVPDI-----LTSIILSSNRFDGM 762
           +                    ++  N   G+I      P       L  + LS N  +G 
Sbjct: 179 M--------------------TISRNRLTGKI------PPTFANLNLAFVDLSRNMLEGD 212

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
                 + K  Q ++L  N+L   +   +G   NL  LDL NN   G +PQ L +L FL 
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 823 FFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLS 861
             NVS N L G IPQG     FD S++ +N  LCG PL 
Sbjct: 272 SLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP 310

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  195 bits (497), Expect = 4e-56
 Identities = 77/351 (21%), Positives = 138/351 (39%), Gaps = 69/351 (19%)

Query: 143 EIPSEIINLSRLS----YLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF 198
           +I  ++ N + LS      +  + ++ G +     +   + +LDLS  +           
Sbjct: 13  QIKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPK-------- 64

Query: 199 ANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHS-CGLQGRIQSSLGNLSKLL 257
                                  IP +LANL  L FL +     L G I  ++  L++L 
Sbjct: 65  --------------------PYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
           +L ++   + G +P  +  + +L  LD S N LSG LP SI +L +L  +    N++SG 
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 318 FPWSIVIGNFTQL-QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT 376
            P S   G+F++L  S+  + N+ +G++  +  NL +L  + + R    G       +  
Sbjct: 165 IPDS--YGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDK 221

Query: 377 QLITLDLSQNSYRGTM-ELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLR 435
               + L++NS    + +    +   KNL  L L +N +                  G  
Sbjct: 222 NTQKIHLAKNSLAFDLGK----VGLSKNLNGLDLRNNRIY-----------------G-- 258

Query: 436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                  P  L     L  L++S N + G+IP      + Q       ++N
Sbjct: 259 -----TLPQGLTQLKFLHSLNVSFNNLCGEIPQ---GGNLQRFDVSAYANN 301

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  151 bits (385), Expect = 6e-41
 Identities = 64/335 (19%), Positives = 109/335 (32%), Gaps = 81/335 (24%)

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420
              + G +  +     ++  LDLS  +      +   L +L  L  L +           
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI-------- 86

Query: 421 TSNTTSQKFTVVGLRSCNLI--EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNL 478
                            N +    P  +     L  L ++   + G IP +L       +
Sbjct: 87  -----------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL-----SQI 124

Query: 479 SALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIG 538
             L                         TLD S N L G                     
Sbjct: 125 KTLV------------------------TLDFSYNALSGT-------------------- 140

Query: 539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR 598
            +P  +  L +L  +    N +SG +P   GSFS   + + +  N   G IP TF   + 
Sbjct: 141 -LPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN- 198

Query: 599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFY 658
           L  +DLS N+ +G       +    + + +  N +       +G   NL  L L++N+ Y
Sbjct: 199 LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIY 257

Query: 659 GIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693
           G +  P+       L  +++S N   G++P    L
Sbjct: 258 GTL--PQGLTQLKFLHSLNVSFNNLCGEIPQGGNL 290

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 79.5 bits (197), Expect = 4e-16
 Identities = 24/86 (27%), Positives = 39/86 (45%), Gaps = 3/86 (3%)

Query: 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG--HIPSCLGNLTNLESLDLSNNNFL-GQ 810
             +  + G++  +      +  L+L   NL     IPS L NL  L  L +   N L G 
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP 92

Query: 811 IPQQLVELTFLEFFNVSDNYLTGPIP 836
           IP  + +LT L +  ++   ++G IP
Sbjct: 93  IPPAIAKLTQLHYLYITHTNVSGAIP 118

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.1 bits (118), Expect = 4e-06
 Identities = 19/64 (29%), Positives = 25/64 (39%), Gaps = 3/64 (4%)

Query: 776 LNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ--IPQQLVELTFLEFFNVSD-NYLT 832
            +  N    G +         + +LDLS  N      IP  L  L +L F  +   N L 
Sbjct: 31  TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90

Query: 833 GPIP 836
           GPIP
Sbjct: 91  GPIP 94

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  219 bits (559), Expect = 1e-61
 Identities = 107/607 (17%), Positives = 185/607 (30%), Gaps = 86/607 (14%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
           S+ + +DL +  ++    ++ +N S L +L L  C ++     +   L  L +L L+ N 
Sbjct: 32  SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
           +    P S   L SL+ L      L+      I  L++L++L+++ N +           
Sbjct: 92  IQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFS 150

Query: 326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG---RCNFSGRIPSSLRNLTQLITLD 382
           N T L  +D + N         +  LR    + +      N    I        +L  L 
Sbjct: 151 NLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELT 210

Query: 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF 442
           L  N     +    L  +L  L V  L          +     S    + GL    + E 
Sbjct: 211 LRGNFNSSNIMKTCLQ-NLAGLHVHRLILGEFKDERNLEIFEPS---IMEGLCDVTIDE- 265

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
                         L+                  N+SA++L+   +   +          
Sbjct: 266 ------------FRLTYTNDFSDDIVKF--HCLANVSAMSLAGVSIKYLED-----VPKH 306

Query: 503 RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
               +L +    L+    +      +  ++ N   G I      L SL  L LS N LS 
Sbjct: 307 FKWQSLSIIRCQLKQFPTLDLPFLKSLTLTMNK--GSISFKKVALPSLSYLDLSRNALSF 364

Query: 563 LLPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI-NC 620
                      + L  LDL + N    +   FM    L  +D  H+  +     S   + 
Sbjct: 365 SGCCSYSDLGTNSLRHLDL-SFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSL 423

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
            KL +LDI     +  F      L +L  L +  N F        +    + L  +DLS 
Sbjct: 424 EKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNT-LSNVFANTTNLTFLDLSK 482

Query: 681 NRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIM 740
            +    +    F             L  LQ                              
Sbjct: 483 CQLEQ-ISWGVF-----------DTLHRLQ------------------------------ 500

Query: 741 TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 800
                      + +S N    +  +    L  L  L+   N ++           +L   
Sbjct: 501 ----------LLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFF 550

Query: 801 DLSNNNF 807
           +L+NN+ 
Sbjct: 551 NLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  216 bits (551), Expect = 2e-60
 Identities = 115/564 (20%), Positives = 185/564 (32%), Gaps = 59/564 (10%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
           S++P +I   S    ++LS +               L  LDLS      +E         
Sbjct: 24  SKVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------DKA 75

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
              L +L  L L    I+S  P + + L+SL  L      L       +G L  L  L++
Sbjct: 76  WHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNV 135

Query: 262 SLNELLG-ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNL----VSLEELDLSFNKLSG 316
           + N +   +LP    NL +L  +DLS N +       +Q L         LD+S N +  
Sbjct: 136 AHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDF 195

Query: 317 EFPWSIVIGNFTQLQSLDFTSNKFSGEL-HASIGNLRSLEVLAIGRCNFSGRI------P 369
                       +L  L    N  S  +    + NL  L V  +    F          P
Sbjct: 196 IQDQ---AFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252

Query: 370 SSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF 429
           S +  L  +   +          +       L N+  +SL+      +  +       K+
Sbjct: 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGV---SIKYLEDVPKHFKW 309

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
             + +  C L +FP    +   L  L L+ N+         L     +LS L+LS N L+
Sbjct: 310 QSLSIIRCQLKQFPTL--DLPFLKSLTLTMNKGSISFKKVAL----PSLSYLDLSRNALS 363

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS 549
                      G   L  LDLS N                          + +    L+ 
Sbjct: 364 FSGCC-SYSDLGTNSLRHLDLSFNGAI----------------------IMSANFMGLEE 400

Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLF 609
           L+ L   H+ L  +         +KL  LD+   N        F+  + L  + ++ N F
Sbjct: 401 LQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF 460

Query: 610 QGRIPRSLI-NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
           +     ++  N + L FLD+   Q+  I      TL  L +L +  N    +        
Sbjct: 461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD--SSHYN 518

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSF 692
               L  +D S NR          
Sbjct: 519 QLYSLSTLDCSFNRIET-SKGILQ 541

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  214 bits (546), Expect = 6e-60
 Identities = 103/571 (18%), Positives = 176/571 (30%), Gaps = 59/571 (10%)

Query: 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
             + ++L+FN            N S L +L+LS              L +L +L L+ N 
Sbjct: 33  STKNIDLSFNPL-KILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNP 91

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG-RI 246
                            L++LE L      + S     +  L +L  L++    +   ++
Sbjct: 92  IQSFS------PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKL 145

Query: 247 QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK----KLDLSINNLSGELPTSIQNLV 302
            +   NL+ L+H+DLS N +       +  L         LD+S+N +   +       +
Sbjct: 146 PAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI 204

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLA---- 358
            L EL L  N  S        + N   L        +F  E +  I     +E L     
Sbjct: 205 KLHELTLRGNFNSSNIM-KTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTI 263

Query: 359 ----IGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL 414
               +   N           L  +  + L+  S +   ++          + LS+    L
Sbjct: 264 DEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPKHF----KWQSLSIIRCQL 319

Query: 415 SLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPS 474
                            + L + N             L  LDLS N +         D  
Sbjct: 320 KQF----PTLDLPFLKSLTL-TMNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLG 374

Query: 475 TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNN 534
           T +L  L+LS N         + L      L  LD   + L+                  
Sbjct: 375 TNSLRHLDLSFNGAIIMSANFMGLEE----LQHLDFQHSTLKRVTE-------------- 416

Query: 535 SFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTF 593
                  S    L+ L  L +S+ N            +  L+ L +  N+F      N F
Sbjct: 417 ------FSAFLSLEKLLYLDISYTNTKIDFDGIFLGLT-SLNTLKMAGNSFKDNTLSNVF 469

Query: 594 MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653
              + L  +DLS    +           +L+ L++  N +  +  S    L +L+ L   
Sbjct: 470 ANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCS 529

Query: 654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
            N+         +      L   +L+NN   
Sbjct: 530 FNRIETSK--GILQHFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  171 bits (435), Expect = 5e-45
 Identities = 103/561 (18%), Positives = 174/561 (31%), Gaps = 91/561 (16%)

Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG 342
                  LS ++P  I    S + +DLSFN L     +S    NF++LQ LD +  +   
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSF--SNFSELQWLDLSRCEIET 70

Query: 343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLK 402
               +   L  L  L +         P S   LT L  L   +          F +  L 
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS--LESFPIGQLI 128

Query: 403 NLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRI 462
            L+ L+++ N++                          + P +  N  +L+ +DLS N I
Sbjct: 129 TLKKLNVAHNFIHS-----------------------CKLPAYFSNLTNLVHVDLSYNYI 165

Query: 463 HGKIPSWL--LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP 520
                + L  L  + Q   +L++S N +     Q          L  L L  N     + 
Sbjct: 166 QTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIK----LHELTLRGNFNSSNIM 221

Query: 521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD-KLSILD 579
                         + +  +   L     +        NL    P  +    D  +    
Sbjct: 222 -------------KTCLQNLAG-LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFR 267

Query: 580 LRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS 639
           L   N F      F   + +  + L+      +    +    K + L I   Q++     
Sbjct: 268 LTYTNDFSDDIVKFHCLANVSAMSLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTL 325

Query: 640 WLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMK 699
               LP L  L L  NK                L  +DLS N  +       F    +  
Sbjct: 326 ---DLPFLKSLTLTMNK----GSISFKKVALPSLSYLDLSRNALS-------FSGCCSYS 371

Query: 700 IVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD-KVPDILTSIILSSNR 758
            + T+ L++L          LS             N   IM+ +    + L  +    + 
Sbjct: 372 DLGTNSLRHLD---------LS------------FNGAIIMSANFMGLEELQHLDFQHST 410

Query: 759 FDGMIPTS-IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LV 816
              +   S   +L+ L  L++   N +         LT+L +L ++ N+F          
Sbjct: 411 LKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFA 470

Query: 817 ELTFLEFFNVSDNYLTGPIPQ 837
             T L F ++S   L      
Sbjct: 471 NTTNLTFLDLSKCQLEQISWG 491

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  142 bits (360), Expect = 1e-35
 Identities = 90/549 (16%), Positives = 153/549 (27%), Gaps = 113/549 (20%)

Query: 292 GELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL 351
           G L   I+ + ++        KLS + P  I     +  +++D + N        S  N 
Sbjct: 2   GSLNPCIEVVPNIT-YQCMDQKLS-KVPDDI----PSSTKNIDLSFNPLKILKSYSFSNF 55

Query: 352 RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSS 411
             L+ L + RC        +   L  L  L L+ N  +      F    L +LE L    
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSF--SGLTSLENLVAVE 113

Query: 412 NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLL 471
             L+ L                            +     L  L+++ N IH        
Sbjct: 114 TKLASL------------------------ESFPIGQLITLKKLNVAHNFIHSCKLPAYF 149

Query: 472 DPSTQNLSALNLSHNLLTGF-DQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL 530
              T NL  ++LS+N +       L  L    +  L+LD+S N                 
Sbjct: 150 SNLT-NLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLN----------------- 191

Query: 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP 590
                 I  I     +   L  L L  N  S  + +        L +  L    F     
Sbjct: 192 -----PIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246

Query: 591 NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVL 650
                           ++ +G     L + +  E   +               L N++ +
Sbjct: 247 LEI----------FEPSIMEG-----LCDVTIDE-FRLTYTNDFSDDIVKFHCLANVSAM 290

Query: 651 ILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ 710
            L        I+         K + + +   +     P+                LK L 
Sbjct: 291 SLAGVS----IKYLEDVPKHFKWQSLSIIRCQLKQ-FPTLDL-----------PFLKSLT 334

Query: 711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770
                    L+             NKG I         L+ + LS N        S ++L
Sbjct: 335 ---------LT------------MNKGSISFKKVALPSLSYLDLSRNALSFSGCCSYSDL 373

Query: 771 KG--LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVS 827
               L+ L+L  N     + +    L  L+ LD  ++           + L  L + ++S
Sbjct: 374 GTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDIS 432

Query: 828 DNYLTGPIP 836
                    
Sbjct: 433 YTNTKIDFD 441

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  127 bits (320), Expect = 2e-30
 Identities = 66/308 (21%), Positives = 114/308 (37%), Gaps = 19/308 (6%)

Query: 98  ENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYL 157
               +V  + L+      SI     + K    + L++        + P+  ++L  L  L
Sbjct: 282 HCLANVSAMSLAGV----SIKYLEDVPKHFKWQSLSIIRCQL--KQFPT--LDLPFLKSL 333

Query: 158 NLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVS 217
            L+ +   G I  + + L +L  LDLS N+         ++++L    ++L  LDL +  
Sbjct: 334 TLTMNK--GSISFKKVALPSLSYLDLSRNALSFSGCC--SYSDL--GTNSLRHLDLSFNG 387

Query: 218 IRSTIPHNLANLSSLTFLSLHSCGLQGRI-QSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
               +  N   L  L  L      L+     S+  +L KLL+LD+S      +       
Sbjct: 388 A-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLG 446

Query: 277 LHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDF 335
           L SL  L ++ N+      +++  N  +L  LDLS  +L  +  W +      +LQ L+ 
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLE-QISWGV-FDTLHRLQLLNM 504

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
           + N       +    L SL  L                    L   +L+ NS     E  
Sbjct: 505 SHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSVACICEHQ 564

Query: 396 FLLVSLKN 403
             L  +K 
Sbjct: 565 KFLQWVKE 572

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 64.3 bits (157), Expect = 1e-10
 Identities = 39/244 (15%), Positives = 73/244 (29%), Gaps = 43/244 (17%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
                     ++P  +   S  + +D+  N ++ +          L  L L   +   I 
Sbjct: 16  YQCMDQKLS-KVPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETI- 71

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
            E +   G   L  + L+ N         SF           + L+ L            
Sbjct: 72  -EDKAWHGLHHLSNLILTGNPIQS-FSPGSF--------SGLTSLENLV---------AV 112

Query: 722 DEVATYDYSLKMNNKGQIMTYDKVPDI--LTSIILSSNRFDGM-IPTSIANLKGLQVLNL 778
                         K   +    +  +  L  + ++ N      +P   +NL  L  ++L
Sbjct: 113 ------------ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDL 160

Query: 779 DNNNLQGHIPSCLGNLTNL----ESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP 834
             N +Q    + L  L        SLD+S  N +  I  Q  +   L    +  N+ +  
Sbjct: 161 SYNYIQTITVNDLQFLRENPQVNLSLDMS-LNPIDFIQDQAFQGIKLHELTLRGNFNSSN 219

Query: 835 IPQG 838
           I + 
Sbjct: 220 IMKT 223

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.3 bits (118), Expect = 4e-06
 Identities = 15/88 (17%), Positives = 28/88 (31%), Gaps = 3/88 (3%)

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG 809
            +      +    +P  I      + ++L  N L+        N + L+ LDLS      
Sbjct: 14  ITYQCMDQKLSK-VPDDI--PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIET 70

Query: 810 QIPQQLVELTFLEFFNVSDNYLTGPIPQ 837
              +    L  L    ++ N +    P 
Sbjct: 71  IEDKAWHGLHHLSNLILTGNPIQSFSPG 98

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  191 bits (488), Expect = 3e-52
 Identities = 106/518 (20%), Positives = 180/518 (34%), Gaps = 35/518 (6%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            + + LDL +  +R    ++  +   L  L L  C +Q     +  +LS L  L L+ N 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
           +      +   L SL+KL     NL+      I +L +L+EL+++ N +   F       
Sbjct: 88  IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFS 146

Query: 326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG---RCNFSGRIPSSLRNLTQLITLD 382
           N T L+ LD +SNK        +  L  + +L +      N    I        +L  L 
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLT 206

Query: 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS-----QKFTVVGLR-- 435
           L  N     +    +   L  LEV  L          +     S        T+   R  
Sbjct: 207 LRNNFDSLNVMKTCIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 436 --SCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
                L +  +      ++    L S  I  ++  +  +   Q+L  +N           
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 494 -----------QLVVLPGGKRF--LLTLDLSSNNLQGPLPVPPS----RTVNYLVSNNSF 536
                      +            L  LDLS N L        S     ++ YL  + + 
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNG 384

Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKE 596
           +  + S    L+ LE L   H+NL  +    +      L  LD+   +        F   
Sbjct: 385 VITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL 444

Query: 597 SRLGMIDLSHNLFQGRIPRSLI-NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
           S L ++ ++ N FQ      +      L FLD+   Q+  + P+   +L +L VL + SN
Sbjct: 445 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASN 504

Query: 656 KFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693
           +   +     I    + L+ I L  N +    P   +L
Sbjct: 505 QLKSV--PDGIFDRLTSLQKIWLHTNPWDCSCPRIDYL 540

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (420), Expect = 2e-43
 Identities = 99/567 (17%), Positives = 182/567 (32%), Gaps = 83/567 (14%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           S K LDLS N L      S  +   L+ LDLS  ++           + + L +L  T N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG--AYQSLSHLSTLILTGN 86

Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
                   +   L SL+ L     N +      + +L  L  L+++ N  + + +L    
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYF 145

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
            +L NLE L LSSN +  +                             +     + LDLS
Sbjct: 146 SNLTNLEHLDLSSNKIQSIYCTD--------------------LRVLHQMPLLNLSLDLS 185

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
            N ++  I           L  L L +N  +    +  +       +  L L     +G 
Sbjct: 186 LNPMN-FIQPGAFKE--IRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242

Query: 519 LPVPPSRT----------VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCL 568
           L                    L   + ++ +I      L ++    L    +  +     
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY 302

Query: 569 GSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628
                 L +++ +   F        +K   L  +  + N  +G    S ++   LEFLD+
Sbjct: 303 NFGWQHLELVNCKFGQF------PTLKLKSLKRLTFTSN--KGGNAFSEVDLPSLEFLDL 354

Query: 629 GDNQIRDI--FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK 686
             N +              +L  L L  N    +        G  +L  +D  ++     
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITM---SSNFLGLEQLEHLDFQHSNLKQM 411

Query: 687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIM---TYD 743
                FL        +  +L YL          +S            +   ++     ++
Sbjct: 412 SEFSVFL--------SLRNLIYLD---------IS------------HTHTRVAFNGIFN 442

Query: 744 KVPDILTSIILSSNRFDGMIPTSI-ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 802
            +   L  + ++ N F       I   L+ L  L+L    L+   P+   +L++L+ L++
Sbjct: 443 GLSS-LEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501

Query: 803 SNNNFLGQIPQQLVELTFLEFFNVSDN 829
           ++N            LT L+   +  N
Sbjct: 502 ASNQLKSVPDGIFDRLTSLQKIWLHTN 528

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  165 bits (419), Expect = 3e-43
 Identities = 119/563 (21%), Positives = 198/563 (35%), Gaps = 68/563 (12%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
               LDLS + L      S S F    L+ L+L+  + ++ E      +LS LS L L+ 
Sbjct: 29  STKNLDLSFNPL--RHLGSYSFFSFPELQVLDLSRCEIQTIE-DGAYQSLSHLSTLILTG 85

Query: 162 SSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS- 220
           +            L +L  L     +   LE         +  L  L+ L++ +  I+S 
Sbjct: 86  NPIQSLALGAFSGLSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSF 139

Query: 221 TIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL----LHLDLSLNELLGELPVSIGN 276
            +P   +NL++L  L L S  +Q    + L  L ++    L LDLSLN +   +      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPM-NFIQPGAFK 198

Query: 277 LHSLKKLDLSINNLSGELP-TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDF 335
              L KL L  N  S  +  T IQ L  LE   L   +            N   L+  D 
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFR----------NEGNLEKFDK 248

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
           ++ +    L      L  L+        +   I      LT + +  L   +     +  
Sbjct: 249 SALEGLCNLTIEEFRLAYLD-------YYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS 301

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLL 455
           +     ++LE+++        L         +    +   S       + +     L  L
Sbjct: 302 YNF-GWQHLELVNCKFGQFPTLKL-------KSLKRLTFTSNKGGNAFSEVDL-PSLEFL 352

Query: 456 DLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNL 515
           DLS N +  K      D  T +L  L+LS N +       + L      L  LD   +NL
Sbjct: 353 DLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQ----LEHLDFQHSNL 408

Query: 516 QGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKL 575
           +                         S    L +L  L +SH +            S  L
Sbjct: 409 KQMSE--------------------FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SL 447

Query: 576 SILDLRANNFFGTI-PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR 634
            +L +  N+F     P+ F +   L  +DLS    +   P +  + S L+ L++  NQ++
Sbjct: 448 EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507

Query: 635 DIFPSWLGTLPNLTVLILQSNKF 657
            +       L +L  + L +N +
Sbjct: 508 SVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  108 bits (271), Expect = 1e-24
 Identities = 94/530 (17%), Positives = 155/530 (29%), Gaps = 113/530 (21%)

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
                         I        ++LD + N        S  +   L+VL + RC     
Sbjct: 13  QCMELNFY-----KIPDNLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI 67

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
              + ++L+ L TL L+ N  +      F    L +L+ L      L+ L          
Sbjct: 68  EDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKLVAVETNLASLE--------- 116

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
                             + +   L  L+++ N I            T NL  L+LS N 
Sbjct: 117 ---------------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLT-NLEHLDLSSNK 160

Query: 488 LTGFDQQ-LVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCK 546
           +       L VL       L+LDLS N +                        I     K
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMN----------------------FIQPGAFK 198

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
              L  L L +N  S  + +        L +  L    F               +     
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN----------LEKFDK 248

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           +  +G +    I   +L +LD   + I D+F      L N++   L S      I   + 
Sbjct: 249 SALEG-LCNLTIEEFRLAYLDYYLDDIIDLFNC----LTNVSSFSLVSVT----IERVKD 299

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726
                  + ++L N +F              +K +        +   +  E  L      
Sbjct: 300 FSYNFGWQHLELVNCKFGQ-------FPTLKLKSLKRLTFTSNKGGNAFSEVDLPS---- 348

Query: 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNR--FDGMIPTSIANLKGLQVLNLDNNNLQ 784
                                 L  + LS N   F G    S      L+ L+L  N + 
Sbjct: 349 ----------------------LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQ--LVELTFLEFFNVSDNYLT 832
             + S    L  LE LD  ++N L Q+ +    + L  L + ++S  +  
Sbjct: 387 -TMSSNFLGLEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTHTR 434

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 96.7 bits (241), Expect = 6e-21
 Identities = 85/414 (20%), Positives = 134/414 (32%), Gaps = 48/414 (11%)

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
                   N  + P+ L        LDLS N +   + S+        L  L+LS   + 
Sbjct: 10  ITYQCMELNFYKIPDNLPF--STKNLDLSFNPLR-HLGSYSFFSFP-ELQVLDLSRCEIQ 65

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS 549
             +            L TL L+ N +Q  L                           L S
Sbjct: 66  TIEDGAY---QSLSHLSTLILTGNPIQS-LA--------------------LGAFSGLSS 101

Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF-FGTIPNTFMKESRLGMIDLSHNL 608
           L+ LV    NL+ L    +G     L  L++  N      +P  F   + L  +DLS N 
Sbjct: 102 LQKLVAVETNLASLENFPIGHLK-TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK 160

Query: 609 FQGRIPRSLINCSKLEF----LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
            Q      L    ++      LD+  N +  I          L  L L++N     + + 
Sbjct: 161 IQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 665 RIDCGFSKLRIIDLSNNRFTG----KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLL 720
            I  G + L +  L    F      +   KS L       +    L YL   +     L 
Sbjct: 220 CIQ-GLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLF 278

Query: 721 SDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN 780
           +       +SL  +   + +           + L + +F          LK L+ L   +
Sbjct: 279 NCLTNVSSFSLV-SVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK---LKSLKRLTFTS 334

Query: 781 NNLQGHIPSCLGNLTNLESLDLSNN--NFLGQIPQQLVELTFLEFFNVSDNYLT 832
           N           +L +LE LDLS N  +F G   Q     T L++ ++S N + 
Sbjct: 335 NKGGNAFS--EVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.5 bits (147), Expect = 2e-09
 Identities = 20/98 (20%), Positives = 33/98 (33%), Gaps = 1/98 (1%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L  + LS      +   +  +L  L  L L  N +Q         L++L+ L     N  
Sbjct: 54  LQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLA 113

Query: 809 GQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
                 +  L  L+  NV+ N +         F+   N
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQS-FKLPEYFSNLTN 150

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 60.1 bits (146), Expect = 2e-09
 Identities = 42/225 (18%), Positives = 73/225 (32%), Gaps = 40/225 (17%)

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
              + LD+  N +R +      + P L VL L   +   I  E       S L  + L+ 
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTI--EDGAYQSLSHLSTLILTG 85

Query: 681 NRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI- 739
           N     L   +F           S L+ L                         N   + 
Sbjct: 86  NPIQ-SLALGAF--------SGLSSLQKL--------------------VAVETNLASLE 116

Query: 740 -MTYDKVPDILTSIILSSNRF-DGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL 797
                 +   L  + ++ N      +P   +NL  L+ L+L +N +Q    + L  L  +
Sbjct: 117 NFPIGHLKT-LKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQM 175

Query: 798 E----SLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
                SLDLS  N +  I     +   L    + +N+ +  + + 
Sbjct: 176 PLLNLSLDLS-LNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  186 bits (474), Expect = 4e-49
 Identities = 121/600 (20%), Positives = 208/600 (34%), Gaps = 69/600 (11%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVN 177
           ++SS   L  L+ L L       +       NL  L  L+L  S     +  +  + L +
Sbjct: 40  TASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK-IYFLHPDAFQGLFH 98

Query: 178 LVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH-NLANLSSLTFLS 236
           L  L L         L+   F N    L  L  LDL    IRS   H +   L+SL  + 
Sbjct: 99  LFELRLYFCGLSDAVLKDGYFRN----LKALTRLDLSKNQIRSLYLHPSFGKLNSLKSID 154

Query: 237 LHSCGLQGRIQSSLGNLS--KLLHLDLSLNELLGELPVSIGN-LHSLKKLDLSINNLSGE 293
             S  +    +  L  L    L    L+ N L   + V  G  ++  + + L I ++SG 
Sbjct: 155 FSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSG- 213

Query: 294 LPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLR- 352
                 N  +++      N +S    +S+++ +   +    F  +        +   L  
Sbjct: 214 ------NGWTVDITGNFSNAISKSQAFSLILAH--HIMGAGFGFHNIKDPDQNTFAGLAR 265

Query: 353 -SLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSS 411
            S+  L +               L  L  L+L+ N      +  F    L NL+VL+LS 
Sbjct: 266 SSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY--GLDNLQVLNLSY 323

Query: 412 NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLL 471
           N L  L                        + +       +  +DL  N I   I     
Sbjct: 324 NLLGEL------------------------YSSNFYGLPKVAYIDLQKNHIA-IIQDQTF 358

Query: 472 DPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV 531
               + L  L+L  N LT               +  + LS N L     +  +  + +L 
Sbjct: 359 -KFLEKLQTLDLRDNALTTIH--------FIPSIPDIFLSGNKLVTLPKINLTANLIHLS 409

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI-- 589
            N     +I  +L ++  L+IL+L+ N  S        S +  L  L L  N        
Sbjct: 410 ENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWET 469

Query: 590 ---PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPN 646
               + F   S L ++ L+HN      P    + + L  L +  N++  +  + L    N
Sbjct: 470 ELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDL--PAN 527

Query: 647 LTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL 706
           L +L +  N+      +      F  L ++D+++N+F  +    +F+ W     V  +  
Sbjct: 528 LEILDISRNQLLAPNPDV-----FVSLSVLDITHNKFICECELSTFINWLNHTNVTIAGP 582

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  178 bits (454), Expect = 1e-46
 Identities = 127/610 (20%), Positives = 203/610 (33%), Gaps = 83/610 (13%)

Query: 278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTS 337
              +       NL+ ++P   Q L + E L LSFN +      S       QLQ L+  S
Sbjct: 4   FDGRIAFYRFCNLT-QVP---QVLNTTERLLLSFNYIRTVTASSF--PFLEQLQLLELGS 57

Query: 338 NKFSGELHA-SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF 396
                 +   +  NL +L +L +G        P + + L  L  L L        +  D 
Sbjct: 58  QYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDG 117

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNL--IEFPNFLKNQH-HLM 453
              +LK L  L LS N +  L    S         +   S  +  +        Q   L 
Sbjct: 118 YFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177

Query: 454 LLDLSSNRIHGKIPSWLLDPSTQ----NLSALNLSHNLLTG-----FDQQLVVLP----G 500
              L++N ++ ++               L  L++S N  T      F   +         
Sbjct: 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNL 560
               ++      +N++                 N+F G     L +  S+  L LSH  +
Sbjct: 238 LAHHIMGAGFGFHNIKD-------------PDQNTFAG-----LARS-SVRHLDLSHGFV 278

Query: 561 SGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
             L  R   +    L +L+L  N         F     L +++LS+NL       +    
Sbjct: 279 FSLNSRVFETLK-DLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGL 337

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
            K+ ++D+  N I  I       L  L  L L+ N    I            +  I LS 
Sbjct: 338 PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-------HFIPSIPDIFLSG 390

Query: 681 NRFTGKLPSKSF------LCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMN 734
           N+    LP  +       L  N  ++ N   L +L  V   +  +L+             
Sbjct: 391 NKLV-TLPKINLTANLIHLSEN--RLENLDILYFLLRVPHLQILILN------------Q 435

Query: 735 NKGQIMTYDKVPDILTSI---ILSSNRFDGMIPTSI-----ANLKGLQVLNLDNNNLQGH 786
           N+    + D+ P    S+    L  N       T +       L  LQVL L++N L   
Sbjct: 436 NRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSL 495

Query: 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
            P    +LT L  L L++N  L  +    +    LE  ++S N L  P P    F +   
Sbjct: 496 PPGVFSHLTALRGLSLNSNR-LTVLSHNDL-PANLEILDISRNQLLAPNPD--VFVSLSV 551

Query: 847 SSFESNSGLC 856
                N  +C
Sbjct: 552 LDITHNKFIC 561

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  175 bits (446), Expect = 1e-45
 Identities = 130/678 (19%), Positives = 230/678 (33%), Gaps = 120/678 (17%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQS-SLGNLSKLLHLDLSL 263
           L+  E L L +  IR+    +   L  L  L L S      I   +  NL  L  LDL  
Sbjct: 23  LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82

Query: 264 NELLGELPVSIGNLHSLKKLDLSINNLSGEL--PTSIQNLVSLEELDLSFNKLSGEFPWS 321
           +++    P +   L  L +L L    LS  +      +NL +L  LDLS N++       
Sbjct: 83  SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIR-SLYLH 141

Query: 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
              G    L+S+DF+SN+        +  L+                         L   
Sbjct: 142 PSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGK----------------------TLSFF 179

Query: 382 DLSQNSYRGTMELDFLLVS----LKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437
            L+ NS    + +D+           LE+L +S N  ++      +    K         
Sbjct: 180 SLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQ------- 232

Query: 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVV 497
                   L   HH+M      + I     +     +  ++  L+LSH  +   + ++  
Sbjct: 233 -----AFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVF- 286

Query: 498 LPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSH 557
                + L  L+L+ N +               +++ +F G        LD+L++L LS+
Sbjct: 287 --ETLKDLKVLNLAYNKINK-------------IADEAFYG--------LDNLQVLNLSY 323

Query: 558 NNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL 617
           N L  L          K++ +DL+ N+       TF    +L  +DL  N        ++
Sbjct: 324 NLLGELYSSNFYGLP-KVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TI 377

Query: 618 INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
                +  + +  N++  +    L       ++ L  N+    +           L+I+ 
Sbjct: 378 HFIPSIPDIFLSGNKLVTLPKINL----TANLIHLSENRLEN-LDILYFLLRVPHLQILI 432

Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKG 737
           L+ NRF+           N         L+ L                     L  N   
Sbjct: 433 LNQNRFS-SCSGDQTPSEN-------PSLEQL--------------------FLGENMLQ 464

Query: 738 QIMTYDKVPDI------LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL 791
                +   D+      L  + L+ N  + + P   ++L  L+ L+L++N L   +    
Sbjct: 465 LAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-VLSHND 523

Query: 792 GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFES 851
               NLE LD+S N  L   P        L   +++ N          + +TF N    +
Sbjct: 524 -LPANLEILDISRNQLLAPNPDV---FVSLSVLDITHNKFICEC----ELSTFINWLNHT 575

Query: 852 NSGLCGRPLSRECESDEA 869
           N  + G P    C   ++
Sbjct: 576 NVTIAGPPADIYCVYPDS 593

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  162 bits (412), Expect = 2e-41
 Identities = 97/511 (18%), Positives = 172/511 (33%), Gaps = 58/511 (11%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           L L    L  ++        L  L  L+L+ N  +S  +      L+ L  ++ S +  F
Sbjct: 102 LRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIF 161

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN--LETLDLGYVSIRSTIP 223
                E+  L        SL +         ++   +    N  LE LD+        I 
Sbjct: 162 LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDIT 221

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLH--SLK 281
            N +N             +      SL     ++      + +      +   L   S++
Sbjct: 222 GNFSN------------AISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVR 269

Query: 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS 341
            LDLS   +        + L  L+ L+L++NK++              LQ L+ + N   
Sbjct: 270 HLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKI--ADEAFYGLDNLQVLNLSYNLLG 327

Query: 342 GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL 401
               ++   L  +  + + + + +     + + L +L TLDL  N+          +  +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-------IHFI 380

Query: 402 KNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNR 461
            ++  + LS N L  L K+         +   L + +++    FL    HL +L L+ NR
Sbjct: 381 PSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDIL---YFLLRVPHLQILILNQNR 437

Query: 462 IHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP--GGKRFLLTLDLSSNNLQGPL 519
                          +L  L L  N+L    +  +      G   L  L L+ N L    
Sbjct: 438 FS-SCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNS-- 494

Query: 520 PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILD 579
                      +    F          L +L  L L+ N L+ L           L ILD
Sbjct: 495 -----------LPPGVFSH--------LTALRGLSLNSNRLTVLSH---NDLPANLEILD 532

Query: 580 LRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
           +  N      P+ F     L ++D++HN F 
Sbjct: 533 ISRNQLLAPNPDVF---VSLSVLDITHNKFI 560

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (410), Expect = 3e-42
 Identities = 103/565 (18%), Positives = 188/565 (33%), Gaps = 63/565 (11%)

Query: 149 INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL 208
           ++       +    SF   IPS +     + SLDLS N      +   +        +NL
Sbjct: 2   LSCDASGVCDGRSRSFT-SIPSGLTA--AMKSLDLSFN--KITYIGHGDLRAC----ANL 52

Query: 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
           + L L    I +       +L SL  L L    L     S  G LS L +L+L  N    
Sbjct: 53  QVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQT 112

Query: 269 -ELPVSIGNLHSLKKLDLSINNLSGELP-TSIQNLVSLEELDLSFNKLSGEFPWSIVIGN 326
             +     NL +L+ L +       E+       L SL EL++    L   +     + +
Sbjct: 113 LGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQ-SLKS 170

Query: 327 FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
              +  L    ++ +  L      L S+  L +   N +    S L        +     
Sbjct: 171 IRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

Query: 387 SYRGTMELDF--------LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ-------KFTV 431
                 +  F         ++ L  +E    + N L       S+  S+           
Sbjct: 231 RGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRR 290

Query: 432 VGLRSCNLIE-FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490
           + +    L             +  + + ++++   +P        ++L  L+LS NL+  
Sbjct: 291 LHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQ-HLKSLEFLDLSENLMVE 348

Query: 491 FDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSL 550
              +     G    L TL LS N+L+                    + +    L  L +L
Sbjct: 349 EYLKNSACKGAWPSLQTLVLSQNHLR-------------------SMQKTGEILLTLKNL 389

Query: 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
             L +S N    +   C     +K+  L+L ++     +         L ++D+S+N   
Sbjct: 390 TSLDISRNTFHPMPDSCQWP--EKMRFLNL-SSTGIRVVKTCIP--QTLEVLDVSNNNLD 444

Query: 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF 670
                 L    +L+ L I  N+++ +  + L   P L V+ +  N+   +     I    
Sbjct: 445 -SFSLFL---PRLQELYISRNKLKTLPDASL--FPVLLVMKISRNQLKSV--PDGIFDRL 496

Query: 671 SKLRIIDLSNNRFTGKLPSKSFLCW 695
           + L+ I L  N +    P   +L  
Sbjct: 497 TSLQKIWLHTNPWDCSCPRIDYLSR 521

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  149 bits (379), Expect = 3e-38
 Identities = 98/585 (16%), Positives = 171/585 (29%), Gaps = 85/585 (14%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
                 D    S  S IP  L   +++  L L    +       L   + L  L L  + 
Sbjct: 5   DASGVCDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
           +      +  +L SL+ LDLS N+LS    +    L SL+ L+L  N        + +  
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFP 120

Query: 326 NFTQLQSLDFTS-NKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLS 384
           N T LQ+L   +   FS         L SL  L I   +       SL+++  +  L L 
Sbjct: 121 NLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180

Query: 385 QNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN 444
            +       L+     L ++  L L    L           S             + F  
Sbjct: 181 LSESAFL--LEIFADILSSVRYLELRDTNL------ARFQFSPLPVDEVSSPMKKLAF-- 230

Query: 445 FLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRF 504
                   +L D S N +               +   + + N L  F+     +      
Sbjct: 231 -----RGSVLTDESFNELL---KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGK 282

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
           + T+ +   ++                       ++ +    L+ ++ + + ++ +  + 
Sbjct: 283 VETVTIRRLHI----------------PQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNT---FMKESRLGMIDLSHNLFQ--GRIPRSLIN 619
                     L  LDL  N                  L  + LS N  +   +    L+ 
Sbjct: 327 CSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLT 385

Query: 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679
              L  LDI  N    +  S       +  L L S     +       C    L ++D+S
Sbjct: 386 LKNLTSLDISRNTFHPMPDS-CQWPEKMRFLNLSSTGIRVVKT-----CIPQTLEVLDVS 439

Query: 680 NNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI 739
           NN                        L+ L          +S             NK + 
Sbjct: 440 NNNLD-SFSL------------FLPRLQEL---------YIS------------RNKLKT 465

Query: 740 MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
           +    +  +L  + +S N+   +       L  LQ + L  N   
Sbjct: 466 LPDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  142 bits (359), Expect = 1e-35
 Identities = 94/509 (18%), Positives = 175/509 (34%), Gaps = 57/509 (11%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSF 164
           L L +S +  +     + + L  LE L+L+ N   S  + S     LS L YLNL  + +
Sbjct: 55  LILKSSRI--NTIEGDAFYSLGSLEHLDLSDNHLSS--LSSSWFGPLSSLKYLNLMGNPY 110

Query: 165 FG-QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIP 223
               + S    L NL +L +     +  E+++ +FA     L++L  L++  +S+R+   
Sbjct: 111 QTLGVTSLFPNLTNLQTLRIGNVETFS-EIRRIDFAG----LTSLNELEIKALSLRNYQS 165

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283
            +L ++  +  L+LH       ++     LS + +L+L    L       +        +
Sbjct: 166 QSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPM 225

Query: 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE 343
                  S     S   L+ L    L  +++           + T     DF  ++    
Sbjct: 226 KKLAFRGSVLTDESFNELLKLLRYILELSEVE--------FDDCTLNGLGDFNPSESDVV 277

Query: 344 LHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKN 403
                    ++  L I +      + +    L ++  + +  +     +   F    LK+
Sbjct: 278 SELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSF-SQHLKS 335

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
           LE L LS N +                                     L  L LS N + 
Sbjct: 336 LEFLDLSENLMVEEYLKN---------------------SACKGAWPSLQTLVLSQNHLR 374

Query: 464 G-KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG-PLPV 521
             +    +L     NL++L++S N                  +  L+LSS  ++     +
Sbjct: 375 SMQKTGEILLTLK-NLTSLDISRNTFHPMPDSCQWPEK----MRFLNLSSTGIRVVKTCI 429

Query: 522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLR 581
           P +  V  + +NN  +         L  L+ L +S N L  L      S    L ++ + 
Sbjct: 430 PQTLEVLDVSNNN--LDSFSL---FLPRLQELYISRNKLKTLPD---ASLFPVLLVMKIS 481

Query: 582 ANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
            N         F + + L  I L  N + 
Sbjct: 482 RNQLKSVPDGIFDRLTSLQKIWLHTNPWD 510

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  140 bits (355), Expect = 3e-35
 Identities = 87/548 (15%), Positives = 174/548 (31%), Gaps = 75/548 (13%)

Query: 307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSG 366
            D      +   P  +       ++SLD + NK +   H  +    +L+VL +     + 
Sbjct: 10  CDGRSRSFT-SIPSGL----TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64

Query: 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS 426
               +  +L  L  LDLS N    +         L +L+ L+L  N    L   +     
Sbjct: 65  IEGDAFYSLGSLEHLDLSDNHL--SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNL 122

Query: 427 QKFTVVGLRSCNLIEF--PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484
                + + +                 L  L++ +  +     S  L    +++  L L 
Sbjct: 123 TNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLR-NYQSQSLKS-IRDIHHLTLH 180

Query: 485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ----GPLPVPPSRTVNYLVSNNS----- 535
            +      +   +       +  L+L   NL      PLPV    +    ++        
Sbjct: 181 LSESAFLLE---IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTD 237

Query: 536 ----FIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD-------KLSILDLRANN 584
                + ++  ++ +L  +E    + N L    P      S+        +  L +    
Sbjct: 238 ESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFY 297

Query: 585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF---PSWL 641
            F  +   +    ++  I + ++           +   LEFLD+ +N + + +    +  
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 642 GTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIV 701
           G  P+L  L+L  N    + +   I      L  +D+S N F     S            
Sbjct: 358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDS----------CQ 407

Query: 702 NTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDG 761
               +++L          LS            +   +++    +P  L  + +S+N    
Sbjct: 408 WPEKMRFLN---------LS------------STGIRVVKTC-IPQTLEVLDVSNNN--- 442

Query: 762 MIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFL 821
            + +    L  LQ L +  N L+  +P        L  + +S N            LT L
Sbjct: 443 -LDSFSLFLPRLQELYISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSL 499

Query: 822 EFFNVSDN 829
           +   +  N
Sbjct: 500 QKIWLHTN 507

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  127 bits (320), Expect = 1e-30
 Identities = 89/559 (15%), Positives = 181/559 (32%), Gaps = 83/559 (14%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           +    D    + +  +P+ +    +++ LDLSFNK++      +       LQ L   S+
Sbjct: 6   ASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDL--RACANLQVLILKSS 60

Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
           + +     +  +L SLE L +   + S    S    L+ L  L+L  N Y+ T+ +  L 
Sbjct: 61  RINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLF 119

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
            +L NL+ L + +      +++                               L  L++ 
Sbjct: 120 PNLTNLQTLRIGNV--ETFSEIRRID---------------------FAGLTSLNELEIK 156

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG- 517
           +  +     S  L    +++  L L  +      +   +       +  L+L   NL   
Sbjct: 157 ALSLR-NYQSQSLKS-IRDIHHLTLHLSESAFLLE---IFADILSSVRYLELRDTNLARF 211

Query: 518 PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSI 577
                P   V+  +   +F G + +      S   L+     +  L        +    +
Sbjct: 212 QFSPLPVDEVSSPMKKLAFRGSVLTDE----SFNELLKLLRYILELSEVEFDDCTL-NGL 266

Query: 578 LDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF 637
            D   +          ++   +  + +        +        K++ + + ++++  + 
Sbjct: 267 GDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVP 326

Query: 638 PSWLGTLPNLTVLILQSNKFYGIIREPRIDCG-FSKLRIIDLSNNRFTG-KLPSKSFLCW 695
            S+   L +L  L L  N       +     G +  L+ + LS N     +   +  L  
Sbjct: 327 CSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386

Query: 696 NAMKIVNTSD--LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII 753
             +  ++ S      + D      W                              +  + 
Sbjct: 387 KNLTSLDISRNTFHPMPDSCQ---WPEK---------------------------MRFLN 416

Query: 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813
           LSS     ++ T I   + L+VL++ NNNL          L  L+ L +S N  L  +P 
Sbjct: 417 LSSTGIR-VVKTCI--PQTLEVLDVSNNNLD-SFSL---FLPRLQELYISRNK-LKTLP- 467

Query: 814 QLVELTFLEFFNVSDNYLT 832
                  L    +S N L 
Sbjct: 468 DASLFPVLLVMKISRNQLK 486

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 79.0 bits (195), Expect = 2e-15
 Identities = 34/285 (11%), Positives = 73/285 (25%), Gaps = 56/285 (19%)

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
              D+  +      + + +      +    +  LDL  N             + L ++ L
Sbjct: 2   LSCDASGVCDGRSRSFTSIPSGLTAA----MKSLDLSFNKITYIGHGDLRACANLQVLIL 57

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
             +        +  +   LE LD+ DN +  +  SW G L +L  L L  N +  +    
Sbjct: 58  KSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTS 117

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
                 + L+ + + N                    +   D   L               
Sbjct: 118 LFP-NLTNLQTLRIGNV--------------ETFSEIRRIDFAGLTS------------- 149

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
                                   L  + + +         S+ +++ +  L L  +   
Sbjct: 150 ------------------------LNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA 185

Query: 785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
             +      L+++  L+L + N        L              
Sbjct: 186 FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAF 230

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 70.5 bits (173), Expect = 1e-12
 Identities = 50/240 (20%), Positives = 84/240 (35%), Gaps = 37/240 (15%)

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
              G+ D     F   IP  L   + ++ LD+  N+I  I    L    NL VLIL+S++
Sbjct: 5   DASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 657 FYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPK 716
              I  E         L  +DLS+N  +  L S  F           S LKYL       
Sbjct: 62  INTI--EGDAFYSLGSLEHLDLSDNHLS-SLSSSWF--------GPLSSLKYL------- 103

Query: 717 EWLLSDEVATYDYSLKMNNKGQIMTYDKVPDI--LTSIILSSNRFDGMIP-TSIANLKGL 773
                        +L  N    +      P++  L ++ + +      I     A L  L
Sbjct: 104 -------------NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 774 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833
             L +   +L+ +    L ++ ++  L L  +     +      L+ + +  + D  L  
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLAR 210

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 67.4 bits (165), Expect = 1e-11
 Identities = 48/330 (14%), Positives = 102/330 (30%), Gaps = 46/330 (13%)

Query: 507 TLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
             D  S +    P  +  +     L S N         L    +L++L+L  + ++ +  
Sbjct: 9   VCDGRSRSFTSIPSGLTAAMKSLDL-SFNKITYIGHGDLRACANLQVLILKSSRINTIEG 67

Query: 566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI-NCSKLE 624
               S    L  LDL  N+      + F   S L  ++L  N +Q     SL  N + L+
Sbjct: 68  DAFYSLG-SLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 625 FLDIGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
            L IG+     +I       L +L  L +++        + +       +  + L  +  
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY--QSQSLKSIRDIHHLTLHLSES 184

Query: 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD 743
              L        ++++ +   D                        +L       +    
Sbjct: 185 A-FLLEIFADILSSVRYLELRDT-----------------------NLARFQFSPL---- 216

Query: 744 KVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 803
            V ++ + +   + R   +   S   L  L    L+ + ++        + T     D +
Sbjct: 217 PVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE------FDDCTLNGLGDFN 270

Query: 804 NNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833
            +         + EL  +E   +   ++  
Sbjct: 271 PSES-----DVVSELGKVETVTIRRLHIPQ 295

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 52.0 bits (125), Expect = 6e-07
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 1/91 (1%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L  +IL S+R + +   +  +L  L+ L+L +N+L     S  G L++L+ L+L  N + 
Sbjct: 52  LQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ 111

Query: 809 G-QIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
              +      LT L+   + +      I + 
Sbjct: 112 TLGVTSLFPNLTNLQTLRIGNVETFSEIRRI 142

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  151 bits (383), Expect = 3e-39
 Identities = 103/503 (20%), Positives = 180/503 (35%), Gaps = 52/503 (10%)

Query: 116 SINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILEL 175
            IN   +   L       L   +           +L +++ L         +    +  L
Sbjct: 13  PINQIFTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGI--KSIDGVEYL 67

Query: 176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFL 235
            NL  ++ S N    +        N    L+ L  + +    I    P  LANL++LT L
Sbjct: 68  NNLTQINFSNNQLTDI----TPLKN----LTKLVDILMNNNQIADITP--LANLTNLTGL 117

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP 295
           +L +  +       L NL+ L  L+LS N +      ++  L SL++L    N ++   P
Sbjct: 118 TLFNNQITD--IDPLKNLTNLNRLELSSNTISD--ISALSGLTSLQQLSFG-NQVTDLKP 172

Query: 296 TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE 355
             + NL +LE LD+S NK+S        +   T L+SL  T+N+ S      +G L +L+
Sbjct: 173 --LANLTTLERLDISSNKVSDISV----LAKLTNLESLIATNNQISDI--TPLGILTNLD 224

Query: 356 VLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS 415
            L++           +L +LT L  LDL+ N       L      L  L  L L +N +S
Sbjct: 225 ELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAPLS----GLTKLTELKLGANQIS 278

Query: 416 LLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPST 475
            ++ +   T      +    + N +E  + + N  +L  L L  N I    P   L    
Sbjct: 279 NISPLAGLTALTNLEL----NENQLEDISPISNLKNLTYLTLYFNNISDISPVSSL---- 330

Query: 476 QNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNN 534
             L  L   +N ++               +  L    N +    P+     +  L +++ 
Sbjct: 331 TKLQRLFFYNNKVSDVSSL-----ANLTNINWLSAGHNQISDLTPLANLTRITQLGLNDQ 385

Query: 535 SFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFM 594
           ++     ++     ++ I     N    L+     S     +  D+   N          
Sbjct: 386 AWTNAPVNY---KANVSIPNTVKNVTGALIAPATISDGGSYTEPDI-TWNLPSYTNEVSY 441

Query: 595 KESRLGMIDLSHNLFQGRIPRSL 617
             S+   I      F G + + L
Sbjct: 442 TFSQPVTIGKGTTTFSGTVTQPL 464

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  147 bits (372), Expect = 9e-38
 Identities = 91/446 (20%), Positives = 164/446 (36%), Gaps = 47/446 (10%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
            +   L++ +   L    +     VS  +L  +  L      +       ++ L +L ++
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 73

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
           + S N+L+   P    + N T+L  +   +N+ +      + NL +L  L +     +  
Sbjct: 74  NFSNNQLTDITP----LKNLTKLVDILMNNNQIADI--TPLANLTNLTGLTLFNNQITD- 126

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
               L+NLT L  L+LS N+      L      L +L+ LS  +     +T +       
Sbjct: 127 -IDPLKNLTNLNRLELSSNTISDISALS----GLTSLQQLSFGNQ----VTDLKPLANLT 177

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
               + + S  + +    L    +L  L  ++N+I    P  +L     NL  L+L+ N 
Sbjct: 178 TLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQ 232

Query: 488 LTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCK 546
           L                L  LDL++N +    P+     +  L +  N      P  L  
Sbjct: 233 LKDIGTL-----ASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISP--LAG 285

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
           L +L  L L+ N L  + P  + +    L+ L L  NN     P + + +  L  +   +
Sbjct: 286 LTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISPVSSLTK--LQRLFFYN 340

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           N        SL N + + +L  G NQI D+ P  L  L  +T L L    +         
Sbjct: 341 NKVSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVN--- 393

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSF 692
               + + I +   N     +   + 
Sbjct: 394 --YKANVSIPNTVKNVTGALIAPATI 417

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  138 bits (349), Expect = 8e-35
 Identities = 102/487 (20%), Positives = 178/487 (36%), Gaps = 76/487 (15%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L          I S   +  L +L  +N + N        + + NL++L  + ++++  
Sbjct: 50  TLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTDI---TPLKNLTKLVDILMNNNQI 102

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
                + +  L NL  L L  N    +        N    L+NL  L+L   +I      
Sbjct: 103 --ADITPLANLTNLTGLTLFNNQITDI----DPLKN----LTNLNRLELSSNTISD--IS 150

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
            L+ L+SL  LS  +   Q      L NL+ L  LD+S N++       +  L +L+ L 
Sbjct: 151 ALSGLTSLQQLSFGN---QVTDLKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLI 205

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
            + N +S   P  +  L +L+EL L+ N+L         + + T L  LD  +N+ S   
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD----IGTLASLTNLTDLDLANNQISNL- 258

Query: 345 HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL 404
            A +  L  L  L +G    S    S L  LT L  L+L++N       +     +LKNL
Sbjct: 259 -APLSGLTKLTELKLGANQISN--ISPLAGLTALTNLELNENQLEDISPIS----NLKNL 311

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
             L+L  N +S ++                           + +   L  L   +N++  
Sbjct: 312 TYLTLYFNNISDIS--------------------------PVSSLTKLQRLFFYNNKVSD 345

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG-PLPVPP 523
                 L     N++ L+  HN ++               +  L L+       P+    
Sbjct: 346 VSSLANL----TNINWLSAGHNQISDLTPL-----ANLTRITQLGLNDQAWTNAPVNYKA 396

Query: 524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRAN 583
           + ++   V N +     P+ +    S     ++ N  S        +FS  ++I      
Sbjct: 397 NVSIPNTVKNVTGALIAPATISDGGSYTEPDITWNLPSY-TNEVSYTFSQPVTI-GKGTT 454

Query: 584 NFFGTIP 590
            F GT+ 
Sbjct: 455 TFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  127 bits (320), Expect = 4e-31
 Identities = 102/557 (18%), Positives = 171/557 (30%), Gaps = 143/557 (25%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
            L    ++ +    ++  +   L    +  L    ++          +  Q+ +L     
Sbjct: 2   PLGSATITQDTPINQI-FTDTALAEKMKTVLGKTNVTDTVS----QTDLDQVTTLQADRL 56

Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
                    +  L +L  +       +   P  L+NLT+L+ + ++ N       L    
Sbjct: 57  GIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLA--- 109

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
            +L NL  L+L +N ++ +                            LKN  +L  L+LS
Sbjct: 110 -NLTNLTGLTLFNNQITDID--------------------------PLKNLTNLNRLELS 142

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
           SN I        L     +L  L+  + +                 L  LD+SSN +   
Sbjct: 143 SNTISDISALSGL----TSLQQLSFGNQVTDLKPL------ANLTTLERLDISSNKVSDI 192

Query: 519 LPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSIL 578
                                    L KL +LE L+ ++N +S + P  LG  +  L  L
Sbjct: 193 SV-----------------------LAKLTNLESLIATNNQISDITP--LGILT-NLDEL 226

Query: 579 DLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFP 638
            L  N        T    + L  +DL++N      P  L   +KL  L +G NQI +I P
Sbjct: 227 SLNGNQL--KDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP 282

Query: 639 SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAM 698
             L  L  LT L L  N+   I            L  + L  N                 
Sbjct: 283 --LAGLTALTNLELNENQLEDIS----PISNLKNLTYLTLYFN----------------- 319

Query: 699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR 758
            I + S +  L                                       L  +   +N+
Sbjct: 320 NISDISPVSSLTK-------------------------------------LQRLFFYNNK 342

Query: 759 FDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVEL 818
                 +S+ANL  +  L+  +N +    P  L NLT +  L L++  +          +
Sbjct: 343 VSD--VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANV 398

Query: 819 TFLEFFNVSDNYLTGPI 835
           +           L  P 
Sbjct: 399 SIPNTVKNVTGALIAPA 415

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  106 bits (266), Expect = 3e-24
 Identities = 82/409 (20%), Positives = 139/409 (33%), Gaps = 78/409 (19%)

Query: 436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD--Q 493
               I            M   L    +   +    LD     ++ L      +   D  +
Sbjct: 10  QDTPINQIFTDTALAEKMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKSIDGVE 65

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSLEI 552
            L         L  ++ S+N L    P+     +  + ++NN      P  L  L +L  
Sbjct: 66  YL-------NNLTQINFSNNQLTDITPLKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR 612
           L L +N ++ + P  L + +  L+ L+L +N    +  +     + L  +   + +    
Sbjct: 117 LTLFNNQITDIDP--LKNLT-NLNRLELSSNTI--SDISALSGLTSLQQLSFGNQV---T 168

Query: 613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK 672
             + L N + LE LDI  N++ DI    L  L NL  LI  +N+   I          + 
Sbjct: 169 DLKPLANLTTLERLDISSNKVSDISV--LAKLTNLESLIATNNQISDIT----PLGILTN 222

Query: 673 LRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
           L  + L+ N+         L + + L     +I N + L  L                  
Sbjct: 223 LDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTK---------------- 266

Query: 728 DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
                                LT + L +N+   + P  +A L  L  L L+ N L+   
Sbjct: 267 ---------------------LTELKLGANQISNISP--LAGLTALTNLELNENQLEDIS 303

Query: 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP 836
           P  + NL NL  L L  NN     P  +  LT L+     +N ++    
Sbjct: 304 P--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSS 348

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 86.6 bits (215), Expect = 7e-18
 Identities = 73/312 (23%), Positives = 121/312 (38%), Gaps = 41/312 (13%)

Query: 530 LVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI 589
            ++ ++ I +I +    L      VL   N++  +         +++ L           
Sbjct: 7   TITQDTPINQIFT-DTALAEKMKTVLGKTNVTDTVS--QTDLD-QVTTLQADRLGI--KS 60

Query: 590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTV 649
            +     + L  I+ S+N      P  L N +KL  + + +NQI DI P  L  L NLT 
Sbjct: 61  IDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG 116

Query: 650 LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTS 704
           L L +N+   I          + L  ++LS+N  +       L S   L     ++ +  
Sbjct: 117 LTLFNNQITDID----PLKNLTNLNRLELSSNTISDISALSGLTSLQQL-SFGNQVTDLK 171

Query: 705 DLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIP 764
            L  L  +    E L           +  N    I    K+ + L S+I ++N+   + P
Sbjct: 172 PLANLTTL----ERL----------DISSNKVSDISVLAKLTN-LESLIATNNQISDITP 216

Query: 765 TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFF 824
             +  L  L  L+L+ N L+      L +LTNL  LDL+NN      P  L  LT L   
Sbjct: 217 --LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270

Query: 825 NVSDNYLTGPIP 836
            +  N ++   P
Sbjct: 271 KLGANQISNISP 282

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 54.2 bits (131), Expect = 1e-07
 Identities = 38/209 (18%), Positives = 59/209 (28%), Gaps = 66/209 (31%)

Query: 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689
           D  I  IF      L      +L        + +        ++  +             
Sbjct: 11  DTPINQIFT--DTALAEKMKTVLGKTNVTDTVSQ----TDLDQVTTLQADRL-------- 56

Query: 690 KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDIL 749
                     I +   ++YL +                                     L
Sbjct: 57  ---------GIKSIDGVEYLNN-------------------------------------L 70

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG 809
           T I  S+N+   + P  + NL  L  + ++NN +    P  L NLTNL  L L NN    
Sbjct: 71  TQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITD 126

Query: 810 QIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
             P  L  LT L    +S N ++      
Sbjct: 127 IDP--LKNLTNLNRLELSSNTISDISALS 153

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 7e-05
 Identities = 14/89 (15%), Positives = 27/89 (30%), Gaps = 6/89 (6%)

Query: 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
           + ++ I      + +       L       L   N+   +     +L  + +L       
Sbjct: 3   LGSATITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGI 58

Query: 808 LGQIPQQLVELTFLEFFNVSDNYLTGPIP 836
             +    +  L  L   N S+N LT   P
Sbjct: 59  --KSIDGVEYLNNLTQINFSNNQLTDITP 85

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  149 bits (379), Expect = 8e-39
 Identities = 107/536 (19%), Positives = 178/536 (33%), Gaps = 95/536 (17%)

Query: 124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDL 183
                L+      ++   +E+P E  N+   +    + S +    P    E   +    L
Sbjct: 8   VSNTFLQEPLRHSSNL--TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRL 65

Query: 184 SLNSGYGLE---LQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC 240
                       L     ++L E   +LE+L     S+   +P    +L SL   + +  
Sbjct: 66  RDCLDRQAHELELNNLGLSSLPELPPHLESLVASCNSLTE-LPELPQSLKSLLVDNNNLK 124

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQN 300
            L             L +L +S N+ L +LP  + N   LK +D+  N+L  +LP    +
Sbjct: 125 ALS-------DLPPLLEYLGVSNNQ-LEKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPS 174

Query: 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
              LE +    N+L  E P    + N   L ++   +N     L        SLE +  G
Sbjct: 175 ---LEFIAAGNNQLE-ELP---ELQNLPFLTAIYADNNS----LKKLPDLPLSLESIVAG 223

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420
                      L+NL  L T+    N       L  L     +LE L++  N+L+ L ++
Sbjct: 224 NNILE--ELPELQNLPFLTTIYADNNL------LKTLPDLPPSLEALNVRDNYLTDLPEL 275

Query: 421 TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSA 480
             + T        +             N   L  L+ SSN I        L     +L  
Sbjct: 276 PQSLTFLD-----VSENIFSGLSELPPN---LYYLNASSNEIRS------LCDLPPSLEE 321

Query: 481 LNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI 540
           LN+S+N L         LP     L  L  S N+L                       E+
Sbjct: 322 LNVSNNKLI-------ELPALPPRLERLIASFNHLA----------------------EV 352

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600
           P       +L+ L + +N L    P          S+ DLR N+    +P        L 
Sbjct: 353 PELPQ---NLKQLHVEYNPLRE-FPDIPE------SVEDLRMNSHLAEVPELPQN---LK 399

Query: 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
            + +  N  +   P        +E L +   ++ D +     T   L   + + + 
Sbjct: 400 QLHVETNPLR-EFPDIP---ESVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  129 bits (326), Expect = 5e-32
 Identities = 84/555 (15%), Positives = 179/555 (32%), Gaps = 112/555 (20%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
           + + L       + L  E+PV   N+ S  +   + +      P        +    L  
Sbjct: 9   SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 312 NKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371
                            Q   L+  +   S  L     +L SL       CN    +P  
Sbjct: 68  CLD-------------RQAHELELNNLGLS-SLPELPPHLESLVA----SCNSLTELPEL 109

Query: 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTV 431
            ++L  L+  + +  +         L      LE L +S+N    L K+     S    +
Sbjct: 110 PQSLKSLLVDNNNLKA---------LSDLPPLLEYLGVSNN---QLEKLPELQNSSFLKI 157

Query: 432 VGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF 491
           + + + +L + P+   +   L  +   +N++  ++P      +   L+A+   +N L   
Sbjct: 158 IDVDNNSLKKLPDLPPS---LEFIAAGNNQLE-ELPEL---QNLPFLTAIYADNNSLK-- 208

Query: 492 DQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLE 551
                 LP     L ++   +N L+    +     +  + ++N+ +  +P       SLE
Sbjct: 209 -----KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP---SLE 260

Query: 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQG 611
            L +  N L+ L P    S +  L + +   +      PN       L  ++ S N  + 
Sbjct: 261 ALNVRDNYLTDL-PELPQSLT-FLDVSENIFSGLSELPPN-------LYYLNASSNEIR- 310

Query: 612 RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671
            +         LE L++ +N++ ++        P L  LI   N    +   P       
Sbjct: 311 SLCDLP---PSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP------Q 357

Query: 672 KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSL 731
            L+ + +  N    + P                  + ++                    L
Sbjct: 358 NLKQLHVEYNPLR-EFPD---------------IPESVE-------------------DL 382

Query: 732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL 791
           +MN+   +    ++P  L  + + +N      P    ++   + L +++  +        
Sbjct: 383 RMNS--HLAEVPELPQNLKQLHVETNPLR-EFPDIPESV---EDLRMNSERVVDPYEFAH 436

Query: 792 GNLTNLESLDLSNNN 806
                LE     +++
Sbjct: 437 ETTDKLEDDVFEHHH 451

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  102 bits (256), Expect = 5e-23
 Identities = 69/385 (17%), Positives = 132/385 (34%), Gaps = 66/385 (17%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L +SN+     +     L     L+ +++  N  K   +P    +   L ++   ++  
Sbjct: 135 YLGVSNN----QLEKLPELQNSSFLKIIDVDNNSLKK--LPDLPPS---LEFIAAGNNQL 185

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
             +   E+  L  L ++    N          +   L +   +LE++  G   +      
Sbjct: 186 --EELPELQNLPFLTAIYADNN----------SLKKLPDLPLSLESIVAGNNIL--EELP 231

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
            L NL  LT +   +  L+  +     +L  L   D  L     +LP    +L  L   +
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLT----DLPELPQSLTFLDVSE 286

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
              + LS   P       +L  L+ S N++        +      L+ L+ ++NK   EL
Sbjct: 287 NIFSGLSELPP-------NLYYLNASSNEIRS------LCDLPPSLEELNVSNNKLI-EL 332

Query: 345 HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL 404
            A    L  L        N    +P   +NL Q   L +  N       L       +++
Sbjct: 333 PALPPRLERLIA----SFNHLAEVPELPQNLKQ---LHVEYN------PLREFPDIPESV 379

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
           E L ++S+   +          Q    + + +  L EFP+  ++   +  L ++S R+  
Sbjct: 380 EDLRMNSHLAEVP------ELPQNLKQLHVETNPLREFPDIPES---VEDLRMNSERVVD 430

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLT 489
                    +T  L      H+   
Sbjct: 431 PYE--FAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 87.0 bits (216), Expect = 4e-18
 Identities = 84/412 (20%), Positives = 133/412 (32%), Gaps = 92/412 (22%)

Query: 434 LRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
             S NL E P   +N         + +      P        + ++   L   L      
Sbjct: 18  RHSSNLTEMPVEAENVKSKTEYYNAWSEWERNAPPGNG--EQREMAVSRLRDCLDRQ--- 72

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEIL 553
                         L+L++  L   LP  P    + + S NS + E+P     L SL + 
Sbjct: 73  -----------AHELELNNLGLS-SLPELPPHLESLVASCNS-LTELPELPQSLKSLLVD 119

Query: 554 VLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRI 613
             +   LS L P         L  L +  NN    +P      S L +ID+ +N  + ++
Sbjct: 120 NNNLKALSDLPP--------LLEYLGVS-NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KL 168

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL 673
           P        LEF+  G+NQ+ ++    L  LP LT +   +N    +   P        L
Sbjct: 169 PDLP---PSLEFIAAGNNQLEELPE--LQNLPFLTAIYADNNSLKKLPDLP------LSL 217

Query: 674 RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKM 733
             I   NN    +LP           + N   L  +                        
Sbjct: 218 ESIVAGNNILE-ELPE----------LQNLPFLTTI--------------------YADN 246

Query: 734 NNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS---- 789
           N    + T   +P  L ++ +  N     +P    +L  L V     + L    P+    
Sbjct: 247 N---LLKTLPDLPPSLEALNVRDNYLTD-LPELPQSLTFLDVSENIFSGLSELPPNLYYL 302

Query: 790 -CLGN--------LTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
               N          +LE L++SNN  L ++P     L  L     S N+L 
Sbjct: 303 NASSNEIRSLCDLPPSLEELNVSNNK-LIELPALPPRLERL---IASFNHLA 350

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 72.0 bits (177), Expect = 3e-13
 Identities = 64/353 (18%), Positives = 108/353 (30%), Gaps = 79/353 (22%)

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVN---YLVSNNSFIGEIPSWL------------- 544
              FL      S+NL   +PV      +   Y  + + +    P                
Sbjct: 9   SNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRD 67

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
           C       L L++  LS L P         L  L   + N    +P        L + + 
Sbjct: 68  CLDRQAHELELNNLGLSSL-PELPPH----LESLVA-SCNSLTELPELPQSLKSLLVDNN 121

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
           +        P        LE+L + +NQ+  +    L     L ++ + +N    +   P
Sbjct: 122 NLKALSDLPP-------LLEYLGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP 172

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
                   L  I   NN+   +LP           + N   L  +               
Sbjct: 173 ------PSLEFIAAGNNQLE-ELPE----------LQNLPFLTAI--------------- 200

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
                    N    +     +P  L SI+  +N  +      + NL  L  +  DNN L+
Sbjct: 201 -----YADNN---SLKKLPDLPLSLESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK 250

Query: 785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ 837
             +P    +L  L       +N+L  +P+    LTFL+      + L+   P 
Sbjct: 251 -TLPDLPPSLEALNVR----DNYLTDLPELPQSLTFLDVSENIFSGLSELPPN 298

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 6e-04
 Identities = 10/71 (14%), Positives = 21/71 (29%), Gaps = 1/71 (1%)

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
           I     +   LQ     ++NL   +P    N+ +      + + +    P    E   + 
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 823 FFNVSDNYLTG 833
              + D     
Sbjct: 62  VSRLRDCLDRQ 72

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  145 bits (369), Expect = 1e-38
 Identities = 58/301 (19%), Positives = 110/301 (36%), Gaps = 27/301 (8%)

Query: 130 EWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEI--LELVNLVSLDLSLNS 187
           +W      D           N +       +  +        +        V+L+L    
Sbjct: 34  QWQRHYNADRNRWHSAWRQANSNNPQIETRTGRAL-KATADLLEDATQPGRVALELRSVP 92

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQ 247
                L +  F +   +LS+L+ + +    +   +P  +   + L  L+L    L+  + 
Sbjct: 93  -----LPQ--FPDQAFRLSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALP 143

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGN---------LHSLKKLDLSINNLSGELPTSI 298
           +S+ +L++L  L +     L ELP  + +         L +L+ L L    +   LP SI
Sbjct: 144 ASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASI 202

Query: 299 QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLA 358
            NL +L+ L +  + LS     +I   +  +L+ LD              G    L+ L 
Sbjct: 203 ANLQNLKSLKIRNSPLS-ALGPAI--HHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI 259

Query: 359 IGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLT 418
           +  C+    +P  +  LTQL  LDL          L  L+  L    ++ +  +  + L 
Sbjct: 260 LKDCSNLLTLPLDIHRLTQLEKLDLRGCV--NLSRLPSLIAQLPANCIILVPPHLQAQLD 317

Query: 419 K 419
           +
Sbjct: 318 Q 318

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  140 bits (354), Expect = 1e-36
 Identities = 62/295 (21%), Positives = 99/295 (33%), Gaps = 43/295 (14%)

Query: 147 EIINLSRLSYLNLSHSSFFGQIPSEI-----------------LELVNLVSLDLSLNSGY 189
              + S    L    S+        +                     N  +  +   +G 
Sbjct: 7   HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGR 66

Query: 190 GLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSS 249
            L+       +          L+L  V +    P     LS L  +++ + GL   +  +
Sbjct: 67  ALKATADLLEDA--TQPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 250 LGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQN--------- 300
           +   + L  L L+ N  L  LP SI +L+ L++L +       ELP  + +         
Sbjct: 123 MQQFAGLETLTLARNP-LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQG 181

Query: 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
           LV+L+ L L +  +    P S  I N   L+SL   ++  S  L  +I +L  LE L + 
Sbjct: 182 LVNLQSLRLEWTGIR-SLPAS--IANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLR 237

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL---LVSLKNLEVLSLSSN 412
            C      P        L  L L   S      L  L   +  L  LE L L   
Sbjct: 238 GCTALRNYPPIFGGRAPLKRLILKDCS-----NLLTLPLDIHRLTQLEKLDLRGC 287

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (338), Expect = 2e-34
 Identities = 57/237 (24%), Positives = 92/237 (38%), Gaps = 13/237 (5%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L+L +  L          F+L HL+ + +        E+P  +   + L  L L+ +  
Sbjct: 85  ALELRSVPL---PQFPDQAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPL 139

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGL---ELQKPNFANLVEKLSNLETLDLGYVSIRST 221
              +P+ I  L  L  L +            L   + +   + L NL++L L +  IRS 
Sbjct: 140 -RALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS- 197

Query: 222 IPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281
           +P ++ANL +L  L + +  L   +  ++ +L KL  LDL     L   P   G    LK
Sbjct: 198 LPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256

Query: 282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           +L L   +    LP  I  L  LE+LDL         P    I        +    +
Sbjct: 257 RLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSL--IAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  126 bits (318), Expect = 7e-32
 Identities = 54/361 (14%), Positives = 103/361 (28%), Gaps = 53/361 (14%)

Query: 223 PHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK 282
            H+  + S    L              L    +  + D +             N ++ + 
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNNPQI 60

Query: 283 LDLSINNLSGELPTSIQNLVS--LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
              +   L       +++        L+L    L  +FP        + LQ +   +   
Sbjct: 61  ETRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQ--AFRLSHLQHMTIDAAGL 116

Query: 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSY-------RGTME 393
             EL  ++     LE L + R      +P+S+ +L +L  L +              + +
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174

Query: 394 LDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLM 453
                  L NL+ L L    +  L    +N  +     + +R+  L      + +   L 
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIRSLPASIANLQN--LKSLKIRNSPLSALGPAIHHLPKLE 232

Query: 454 LLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP---GGKRFLLTLDL 510
            LDL         P          L  L L           L+ LP        L  LDL
Sbjct: 233 ELDLRGCTALRNYPPIFGG--RAPLKRLILKDC------SNLLTLPLDIHRLTQLEKLDL 284

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
                                     +  +PS + +L +  I+++  +  + L      +
Sbjct: 285 ---------------------RGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPVA 323

Query: 571 F 571
            
Sbjct: 324 R 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  119 bits (301), Expect = 1e-29
 Identities = 59/328 (17%), Positives = 108/328 (32%), Gaps = 32/328 (9%)

Query: 342 GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL 401
           G  H    +    E L              L    +    D ++          +   + 
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRW------HSAWRQANS 55

Query: 402 KNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNR 461
            N ++ + +   L     +  + T      + LRS  L +FP+      HL  + + +  
Sbjct: 56  NNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG 115

Query: 462 IHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP---GGKRFLLTLDLSSNNLQGP 518
           +  ++P  +       L  L L+ N        L  LP        L  L + +      
Sbjct: 116 LM-ELPDTMQ--QFAGLETLTLARN-------PLRALPASIASLNRLRELSIRACPELTE 165

Query: 519 LP-----VPPSRTVNYLVS------NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC 567
           LP        S     LV+        + I  +P+ +  L +L+ L + ++ LS  L   
Sbjct: 166 LPEPLASTDASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPA 224

Query: 568 LGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
           +     KL  LDLR        P  F   + L  + L        +P  +   ++LE LD
Sbjct: 225 IHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLD 283

Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSN 655
           +         PS +  LP   ++++  +
Sbjct: 284 LRGCVNLSRLPSLIAQLPANCIILVPPH 311

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  116 bits (292), Expect = 2e-28
 Identities = 48/220 (21%), Positives = 86/220 (39%), Gaps = 22/220 (10%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            + +  + L   +    ++ +   LE L LA N  ++  +P+ I +L+RL  L++     
Sbjct: 108 HMTIDAAGL-MEL--PDTMQQFAGLETLTLARNPLRA--LPASIASLNRLRELSIRACPE 162

Query: 165 FGQIPSEI---------LELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGY 215
             ++P  +           LVNL SL L         ++       +  L NL++L +  
Sbjct: 163 LTELPEPLASTDASGEHQGLVNLQSLRLEWTG-----IRS--LPASIANLQNLKSLKIRN 215

Query: 216 VSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIG 275
             + + +   + +L  L  L L  C          G  + L  L L     L  LP+ I 
Sbjct: 216 SPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIH 274

Query: 276 NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315
            L  L+KLDL        LP+ I  L +   + +  +  +
Sbjct: 275 RLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 99.2 bits (248), Expect = 1e-22
 Identities = 49/341 (14%), Positives = 100/341 (29%), Gaps = 53/341 (15%)

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
              L    +    P     S+   +  ++ +            ++ +I   +   L    
Sbjct: 14  RENLYFQGSTALRPYHDVLSQWQRHYNADRNRW-HSAWRQANSNNPQIETRTGRALKATA 72

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
                +       L+LR +      P+   + S L  + +        +P ++   + LE
Sbjct: 73  DLLEDATQPGRVALELR-SVPLPQFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLE 130

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSN-------KFYGIIREPRIDCGFSKLRIID 677
            L +  N +R + P+ + +L  L  L +++        +            G   L+ + 
Sbjct: 131 TLTLARNPLRAL-PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKG 737
           L        LP+          I N  +LK L                     ++ +   
Sbjct: 190 LEWTGIR-SLPAS---------IANLQNLKSL--------------------KIRNS--- 216

Query: 738 QIMTYDKVPDI------LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL 791
            +     +         L  + L         P        L+ L L + +    +P  +
Sbjct: 217 PLSA---LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDI 273

Query: 792 GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
             LT LE LDL     L ++P  + +L       V  +   
Sbjct: 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 93.5 bits (233), Expect = 8e-21
 Identities = 41/307 (13%), Positives = 93/307 (30%), Gaps = 34/307 (11%)

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN 591
             ++ +      L +         +  + +          +     ++ R         +
Sbjct: 20  QGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA------NSNNPQIETRTGRALKATAD 73

Query: 592 TF--MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTV 649
                 +     ++L       + P      S L+ + I    + ++ P  +     L  
Sbjct: 74  LLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLET 131

Query: 650 LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL 709
           L L  N    +   P      ++LR + +       +LP        + +     +L+ L
Sbjct: 132 LTLARNPLRAL---PASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSL 188

Query: 710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIAN 769
             +       L   +A       + N             L S+ + ++     +  +I +
Sbjct: 189 -RLEWTGIRSLPASIA------NLQN-------------LKSLKIRNSPLSA-LGPAIHH 227

Query: 770 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           L  L+ L+L       + P   G    L+ L L + + L  +P  +  LT LE  ++   
Sbjct: 228 LPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGC 287

Query: 830 YLTGPIP 836
                +P
Sbjct: 288 VNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 70.7 bits (174), Expect = 3e-13
 Identities = 41/283 (14%), Positives = 82/283 (28%), Gaps = 58/283 (20%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
             E L    +         L  +  +    D    +      N     +   +   +   
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQW-QRHYNADRNRWHSAWRQAN----SNNPQIETRTGRA 67

Query: 609 FQGRIPRSLINCS--KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
            +      L + +      L++    +    P     L +L  + + +     +   P  
Sbjct: 68  LK-ATADLLEDATQPGRVALELRSVPLPQF-PDQAFRLSHLQHMTIDAAGLMEL---PDT 122

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726
              F+ L  + L+ N     LP+          I + + L+ L                 
Sbjct: 123 MQQFAGLETLTLARNPLR-ALPAS---------IASLNRLREL----------------- 155

Query: 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH 786
              S++   +            LT   L               L  LQ L L+   ++  
Sbjct: 156 ---SIRACPE------------LTE--LPEPLASTDASGEHQGLVNLQSLRLEWTGIR-S 197

Query: 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           +P+ + NL NL+SL + N+  L  +   +  L  LE  ++   
Sbjct: 198 LPASIANLQNLKSLKIRNSP-LSALGPAIHHLPKLEELDLRGC 239

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 63.4 bits (155), Expect = 7e-11
 Identities = 26/139 (18%), Positives = 48/139 (34%), Gaps = 20/139 (14%)

Query: 121 SSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS 180
           +S+  L +L+ L +  +   +  +   I +L +L  L+L   +     P        L  
Sbjct: 200 ASIANLQNLKSLKIRNSPLSA--LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKR 257

Query: 181 LDLSLNSGYGLELQKPNFANLVE------KLSNLETLDLGYVSIRSTIPHNLANLSSLTF 234
           L L             + +NL+       +L+ LE LDL      S +P  +A L +   
Sbjct: 258 LILK------------DCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCI 305

Query: 235 LSLHSCGLQGRIQSSLGNL 253
           + +         Q      
Sbjct: 306 ILVPPHLQAQLDQHRPVAR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 50.7 bits (122), Expect = 1e-06
 Identities = 25/128 (19%), Positives = 39/128 (30%), Gaps = 10/128 (7%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L + NS L        ++  L  LE L+L          P      + L  L L   S 
Sbjct: 210 SLKIRNSPL---SALGPAIHHLPKLEELDLR-GCTALRNYPPIFGGRAPLKRLILKDCSN 265

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
              +P +I  L  L  LDL         L +    +L+ +L     + +          H
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCV----NLSR--LPSLIAQLPANCIILVPPHLQAQLDQH 319

Query: 225 NLANLSSL 232
                 + 
Sbjct: 320 RPVARPAE 327

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  134 bits (340), Expect = 1e-34
 Identities = 81/412 (19%), Positives = 145/412 (35%), Gaps = 69/412 (16%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L    +     IN       L       L                L  ++ L ++    
Sbjct: 4   TLATLPA----PINQIFPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAG--- 53

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
                 ++  +  +                        E L+NLE L+L    I    P 
Sbjct: 54  -----EKVASIQGI------------------------EYLTNLEYLNLNGNQITDISP- 83

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
            L+NL  LT L + +  +     S+L NL+ L  L L+ + +    P  + NL  +  L+
Sbjct: 84  -LSNLVKLTNLYIGTNKIT--DISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLN 138

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
           L  N+      + + N+  L  L ++ +K+         I N T L SL    N+     
Sbjct: 139 LGANHNLS-DLSPLSNMTGLNYLTVTESKVKD----VTPIANLTDLYSLSLNYNQIEDI- 192

Query: 345 HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL 404
            + + +L SL          +    + + N+T+L +L +  N       L     +L  L
Sbjct: 193 -SPLASLTSLHYFTAYVNQITD--ITPVANMTRLNSLKIGNNKITDLSPLA----NLSQL 245

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
             L + +N +S +  V   T  +   V      N I   + L N   L  L L++N++  
Sbjct: 246 TWLEIGTNQISDINAVKDLTKLKMLNV----GSNQISDISVLNNLSQLNSLFLNNNQLGN 301

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           +    +      NL+ L LS N +T   + L  L      + + D ++  ++
Sbjct: 302 EDMEVIG--GLTNLTTLFLSQNHITDI-RPLASLSK----MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  129 bits (327), Expect = 8e-33
 Identities = 82/437 (18%), Positives = 155/437 (35%), Gaps = 106/437 (24%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
               +L++ +   L    +     V+   L S+ KL ++   ++      I+ L +LE L
Sbjct: 16  FPDADLAEGIRAVLQKASVTD--VVTQEELESITKLVVAGEKVAS--IQGIEYLTNLEYL 71

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
           +L+ N+++   P    + N  +L +L   +NK +                          
Sbjct: 72  NLNGNQITDISP----LSNLVKLTNLYIGTNKIT-------------------------- 101

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
             S+L+NLT L  L L++++      L     +L  +  L+L +N               
Sbjct: 102 DISALQNLTNLRELYLNEDNISDISPLA----NLTKMYSLNLGAN--------------- 142

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
                     + +   + L N   L  L ++ +++    P   L     +L +L+L++N 
Sbjct: 143 ----------HNLSDLSPLSNMTGLNYLTVTESKVKDVTPIANL----TDLYSLSLNYNQ 188

Query: 488 LTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKL 547
           +      L  L      L       N +    P                       +  +
Sbjct: 189 IEDISP-LASLTS----LHYFTAYVNQITDITP-----------------------VANM 220

Query: 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607
             L  L + +N ++ L P  L + S +L+ L++  N    +  N     ++L M+++  N
Sbjct: 221 TRLNSLKIGNNKITDLSP--LANLS-QLTWLEIGTNQI--SDINAVKDLTKLKMLNVGSN 275

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
                    L N S+L  L + +NQ+ +     +G L NLT L L  N    I       
Sbjct: 276 QISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIR----PL 329

Query: 668 CGFSKLRIIDLSNNRFT 684
              SK+   D +N    
Sbjct: 330 ASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  111 bits (279), Expect = 2e-26
 Identities = 74/387 (19%), Positives = 146/387 (37%), Gaps = 58/387 (14%)

Query: 446 LKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFL 505
             +    +   L    +   +    L    ++++ L ++   +    Q +  L      L
Sbjct: 18  DADLAEGIRAVLQKASVTDVVTQEEL----ESITKLVVAGEKVASI-QGIEYLTN----L 68

Query: 506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP 565
             L+L+ N +    P+     +  L    + I +I + L  L +L  L L+ +N+S + P
Sbjct: 69  EYLNLNGNQITDISPLSNLVKLTNLYIGTNKITDISA-LQNLTNLRELYLNEDNISDISP 127

Query: 566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF 625
             L + + K+  L+L AN+    +       + L  + ++ +  +   P  + N + L  
Sbjct: 128 --LANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYS 181

Query: 626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
           L +  NQI DI P  L +L +L       N+   I          ++L  + + NN+ T 
Sbjct: 182 LSLNYNQIEDISP--LASLTSLHYFTAYVNQITDIT----PVANMTRLNSLKIGNNKIT- 234

Query: 686 KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV 745
                         +   ++L  L  +       +     +   ++K   K         
Sbjct: 235 -------------DLSPLANLSQLTWLE------IGTNQISDINAVKDLTK--------- 266

Query: 746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNN 805
              L  + + SN+      + + NL  L  L L+NN L       +G LTNL +L LS N
Sbjct: 267 ---LKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQN 321

Query: 806 NFLGQIPQQLVELTFLEFFNVSDNYLT 832
           +     P  L  L+ ++  + ++  + 
Sbjct: 322 HITDIRP--LASLSKMDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  109 bits (276), Expect = 4e-26
 Identities = 74/438 (16%), Positives = 147/438 (33%), Gaps = 110/438 (25%)

Query: 370 SSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF 429
               +L + I   L + S    +  +     L+++  L ++   ++ +            
Sbjct: 16  FPDADLAEGIRAVLQKASVTDVVTQE----ELESITKLVVAGEKVASIQ----------- 60

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
                           ++   +L  L+L+ N+I    P   L      L+ L +  N +T
Sbjct: 61  ---------------GIEYLTNLEYLNLNGNQITDISPLSNL----VKLTNLYIGTNKIT 101

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLD 548
                L  L      L  L L+ +N+    P+     +  L +  N  + ++   L  + 
Sbjct: 102 DISA-LQNLTN----LRELYLNEDNISDISPLANLTKMYSLNLGANHNLSDLSP-LSNMT 155

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            L  L ++ + +  + P  + + +  L  L L  N      P   +    L       N 
Sbjct: 156 GLNYLTVTESKVKDVTP--IANLT-DLYSLSLNYNQIEDISPLASLTS--LHYFTAYVNQ 210

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
                P  + N ++L  L IG+N+I D+ P  L  L  LT L + +N+    I +     
Sbjct: 211 ITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ----ISDINAVK 262

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYD 728
             +KL+++++ +N+ +               I   ++L  L                   
Sbjct: 263 DLTKLKMLNVGSNQIS--------------DISVLNNLSQLNS----------------- 291

Query: 729 YSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788
                                  + L++N+        I  L  L  L L  N++    P
Sbjct: 292 -----------------------LFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP 328

Query: 789 SCLGNLTNLESLDLSNNN 806
             L +L+ ++S D +N  
Sbjct: 329 --LASLSKMDSADFANQV 344

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =   99 bits (250), Expect = 8e-23
 Identities = 73/386 (18%), Positives = 126/386 (32%), Gaps = 82/386 (21%)

Query: 304 LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN 363
              L      ++  FP      +  +           +  +  +   L S+  L +    
Sbjct: 2   AATLATLPAPINQIFP----DADLAEGIRAVLQKASVTDVV--TQEELESITKLVVAGEK 55

Query: 364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSN 423
            +      +  LT L  L+L+ N       L     +L  L  L + +N           
Sbjct: 56  VAS--IQGIEYLTNLEYLNLNGNQITDISPLS----NLVKLTNLYIGTN----------- 98

Query: 424 TTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNL 483
                           I   + L+N  +L  L L+ + I    P   L      + +LNL
Sbjct: 99  ---------------KITDISALQNLTNLRELYLNEDNISDISPLANL----TKMYSLNL 139

Query: 484 SHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSW 543
             N        L  + G    L  L ++ + ++   P                       
Sbjct: 140 GANHNLSDLSPLSNMTG----LNYLTVTESKVKDVTP----------------------- 172

Query: 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603
           +  L  L  L L++N +  + P  L S +  L       N      P      +RL  + 
Sbjct: 173 IANLTDLYSLSLNYNQIEDISP--LASLT-SLHYFTAYVNQITDITP--VANMTRLNSLK 227

Query: 604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE 663
           + +N      P  L N S+L +L+IG NQI DI    +  L  L +L + SN+    I +
Sbjct: 228 IGNNKITDLSP--LANLSQLTWLEIGTNQISDINA--VKDLTKLKMLNVGSNQ----ISD 279

Query: 664 PRIDCGFSKLRIIDLSNNRFTGKLPS 689
             +    S+L  + L+NN+   +   
Sbjct: 280 ISVLNNLSQLNSLFLNNNQLGNEDME 305

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 91.4 bits (228), Expect = 5e-20
 Identities = 57/332 (17%), Positives = 113/332 (34%), Gaps = 51/332 (15%)

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
             TL      +    P          V   + + ++ +   +L+S+  LV++   ++ + 
Sbjct: 2   AATLATLPAPINQIFPDADLAEGIRAVLQKASVTDVVT-QEELESITKLVVAGEKVASIQ 60

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
              +   +  L  L+L  N      P + +   +L  + +  N        +L N + L 
Sbjct: 61  G--IEYLT-NLEYLNLNGNQITDISPLSNLV--KLTNLYIGTNKIT--DISALQNLTNLR 113

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
            L + ++ I DI P  L  L  +  L L +N     + +       + L  + ++ ++  
Sbjct: 114 ELYLNEDNISDISP--LANLTKMYSLNLGANH---NLSDLSPLSNMTGLNYLTVTESKVK 168

Query: 685 GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDK 744
                          +   ++L  L  +                 SL  N    I     
Sbjct: 169 --------------DVTPIANLTDLYSL-----------------SLNYNQIEDISPLAS 197

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +   L       N+   + P  +AN+  L  L + NN +    P  L NL+ L  L++  
Sbjct: 198 LTS-LHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGT 252

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP 836
           N         + +LT L+  NV  N ++    
Sbjct: 253 NQI--SDINAVKDLTKLKMLNVGSNQISDISV 282

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 2e-33
 Identities = 72/468 (15%), Positives = 148/468 (31%), Gaps = 32/468 (6%)

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
           I     N ++     ++ + L   L     +  ++K+LDLS N LS      +     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365
            L+LS N L         + + + L++LD  +N         +    S+E L     N S
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 366 GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
               S  +       + L+ N      +LD        ++ L L  N +  +       +
Sbjct: 113 RVSCSRGQGKKN---IYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS 167

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
           S     + L+   + +    +     L  LDLSSN++   +       S   ++ ++L +
Sbjct: 168 SDTLEHLNLQYNFIYDVKGQV-VFAKLKTLDLSSNKLA-FMGPEF--QSAAGVTWISLRN 223

Query: 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL--VSNNSFIGEIPSW 543
           N L   ++ L         L   DL  N                +  V+  +        
Sbjct: 224 NKLVLIEKALRFSQN----LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQN 279

Query: 544 LCKLDSLEILVLSHNNLS----GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRL 599
             +     +                 R +     + ++L  +  +    +      ++R 
Sbjct: 280 EEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQ-GSETERLECERENQARQ 338

Query: 600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659
             ID     ++  I +  +       L+     + +   +       L   + Q+    G
Sbjct: 339 REIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAV---G 395

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK 707
            I         S L+++     R+      +  +  NA++  +    K
Sbjct: 396 QIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHK 443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  129 bits (325), Expect = 1e-31
 Identities = 74/503 (14%), Positives = 158/503 (31%), Gaps = 34/503 (6%)

Query: 126 LVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSL 185
               +   +  +  K + + S   +   +  L+LS +       +++     L  L+LS 
Sbjct: 9   GNRYKIEKVTDSSLKQA-LASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 186 NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR 245
           N  Y       +  +    LS L TLDL    ++      L    S+  L   +  +   
Sbjct: 68  NVLYET----LDLES----LSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS-- 112

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG-ELPTSIQNLVSL 304
            + S        ++ L+ N++     +  G    ++ LDL +N +          +  +L
Sbjct: 113 -RVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTL 171

Query: 305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364
           E L+L +N +  +    +    F +L++LD +SNK +  +     +   +  +++     
Sbjct: 172 EHLNLQYNFIY-DVKGQV---VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226

Query: 365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT 424
              I  +LR    L   DL  N +      DF     KN  V +++   +  LT      
Sbjct: 227 V-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFF---SKNQRVQTVAKQTVKKLTGQNEEE 282

Query: 425 TSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL--LDPSTQNLSALN 482
            +          C       F      L   + +     G     L     +      ++
Sbjct: 283 CTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 483 LSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIG--EI 540
                      Q+ +    K+  +TL+     L   +            +    +G  E+
Sbjct: 343 ALKEQYRTVIDQVTLR---KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600
                +   L++L         +        ++ +   D+  +            +   G
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNG 459

Query: 601 MIDLSHNLFQGRIPRSLINCSKL 623
             DL+       +   ++    L
Sbjct: 460 EADLALASANATLQELVVREQNL 482

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  123 bits (311), Expect = 7e-30
 Identities = 63/497 (12%), Positives = 150/497 (30%), Gaps = 53/497 (10%)

Query: 144 IPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203
           I     N +R     ++ SS    + S      N+  LDLS N    +       A  + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------AADLA 55

Query: 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSL 263
             + LE L+L    +  T+   L +LS+L  L L++  +       L     +  L  + 
Sbjct: 56  PFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 264 NELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323
           N +     VS       K + L+ N ++            ++ LDL  N++     ++ +
Sbjct: 109 NNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAEL 164

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
             +   L+ L+   N    ++   +     L+ L +     +  +    ++   +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
             N       ++  L   +NLE   L  N     T     + +Q+   V  ++   +   
Sbjct: 222 RNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 444 NF--LKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGG 501
           N                   +       L+    +  + L+   +     + +       
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQAR- 337

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
                 +D      +              V +   +           +   L      L 
Sbjct: 338 ---QREIDALKEQYR-------------TVIDQVTLR--------KQAKITLEQKKKALD 373

Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLF-QGRIPRSLINC 620
             +     + ++    L          + +   ++S L ++      + +  + +  +  
Sbjct: 374 EQVSNGRRAHAELDGTLQQAVGQ--IELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQN 431

Query: 621 SKLEFLDIGDNQIRDIF 637
           + +   D+  ++   + 
Sbjct: 432 NAIRDWDMYQHKETQLA 448

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  113 bits (283), Expect = 2e-26
 Identities = 71/470 (15%), Positives = 141/470 (30%), Gaps = 48/470 (10%)

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
           +  +    ++  ++ + L                             +  ++  ++  LD
Sbjct: 5   IKQNGNRYKIEKVTDSSLKQAL------------------------ASLRQSAWNVKELD 40

Query: 457 LSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           LS N +     + L       L  LNLS N+L      L  L      L TLDL++N +Q
Sbjct: 41  LSGNPLSQISAADL--APFTKLELLNLSSNVLYET-LDLESLST----LRTLDLNNNYVQ 93

Query: 517 GPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLS 576
             L V PS    +  +NN  I  +          + + L++N ++ L     G  S ++ 
Sbjct: 94  E-LLVGPSIETLHAANNN--ISRVSCSR--GQGKKNIYLANNKITMLRDLDEGCRS-RVQ 147

Query: 577 ILDLRANNFFG-TIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRD 635
            LDL+ N                L  ++L +N     +    +  +KL+ LD+  N++  
Sbjct: 148 YLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAF 205

Query: 636 IFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCW 695
           +      +   +T + L++NK   I    +       L   DL  N F        F   
Sbjct: 206 M-GPEFQSAAGVTWISLRNNKLVLI---EKALRFSQNLEHFDLRGNGFHCGTLRDFFSKN 261

Query: 696 NAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS 755
             ++ V    +K L    + +E  +        Y  +            +     +++  
Sbjct: 262 QRVQTVAKQTVKKLTG-QNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSG 320

Query: 756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP--- 812
                  +     N    + ++      +  I           +L+        Q+    
Sbjct: 321 QGSETERLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGR 380

Query: 813 QQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSR 862
           +   EL       V    L     +                    +   +
Sbjct: 381 RAHAELDGTLQQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ 430

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  104 bits (260), Expect = 2e-23
 Identities = 69/468 (14%), Positives = 144/468 (30%), Gaps = 53/468 (11%)

Query: 98  ENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYL 157
           ++  +V +LDLS + L  S  S++ L     LE LNL+ N         ++ +LS L  L
Sbjct: 31  QSAWNVKELDLSGNPL--SQISAADLAPFTKLELLNLSSNVLYE---TLDLESLSTLRTL 85

Query: 158 NLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVS 217
           +L+++        E+L   ++ +L  + N+   +            +    + + L    
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAANNNISRVSC---------SRGQGKKNIYLANNK 131

Query: 218 IRSTIPHNLANLSSLTFLSLHSCGLQG-RIQSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
           I      +    S + +L L    +          +   L HL+L  N +  ++   +  
Sbjct: 132 ITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQV-V 189

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT 336
              LK LDLS N L+  +    Q+   +  + L  NKL         +     L+  D  
Sbjct: 190 FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL---IEKALRFSQNLEHFDLR 245

Query: 337 SNKFS-GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
            N F  G L       + ++ +A            +++ LT     + +  +        
Sbjct: 246 GNGFHCGTLRDFFSKNQRVQTVA----------KQTVKKLTGQNEEECTVPT-------- 287

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLL 455
             L          L + +   L  +     +    ++  +           +NQ     +
Sbjct: 288 --LGHYGAYCCEDLPAPFADRLIALKRKEHA----LLSGQGSETERLECERENQARQREI 341

Query: 456 DLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNL 515
           D    +    +   +     Q    L      L                 L   +    L
Sbjct: 342 DALKEQYR-TVIDQVTLR-KQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIEL 399

Query: 516 QGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
           Q          +   +        +     + +++    +  +  + L
Sbjct: 400 QHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQL 447

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 96.5 bits (240), Expect = 5e-21
 Identities = 62/421 (14%), Positives = 127/421 (30%), Gaps = 55/421 (13%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L+LS++     +  +  L  L  L  L+L  N         E++    +  L+ ++++ 
Sbjct: 62  LLNLSSN----VLYETLDLESLSTLRTLDLNNNYV------QELLVGPSIETLHAANNN- 110

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS-TIP 223
             ++     +     ++ L+ N    L              S ++ LDL    I +    
Sbjct: 111 ISRVSCSRGQ--GKKNIYLANNKITMLR------DLDEGCRSRVQYLDLKLNEIDTVNFA 162

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283
              A+  +L  L+L    +   ++  +   +KL  LDLS N+L   +     +   +  +
Sbjct: 163 ELAASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWI 219

Query: 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN----------FTQLQSL 333
            L  N L   +  +++   +LE  DL  N             N            +L   
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 334 DFTSNKFSGELHASIGNLRSLEVLAIGRC---------------NFSGRIPSSLRNLTQL 378
           +          H        L      R                + + R+     N  + 
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQ 338

Query: 379 ITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL-SLLTKVTSNTTSQKFTVVGLRSC 437
             +D  +  YR  ++   L    +    L      L   ++           T+   ++ 
Sbjct: 339 REIDALKEQYRTVIDQVTLR--KQAKITLEQKKKALDEQVSNGRRAHAELDGTL--QQAV 394

Query: 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVV 497
             IE  +  + Q  L LL     R                +   ++  +  T   ++   
Sbjct: 395 GQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQ-NNAIRDWDMYQHKETQLAEENAR 453

Query: 498 L 498
           L
Sbjct: 454 L 454

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 2e-07
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
           I     N    ++  + +++L+  + S   +  N++ LDLS N         L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 823 FFNVSDNYLTGPIP 836
             N+S N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  128 bits (324), Expect = 2e-31
 Identities = 87/486 (17%), Positives = 169/486 (34%), Gaps = 34/486 (6%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
                L++    I      ++ +LS L  L +    +Q    S      +L +LDLS N+
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 266 LLGELPVSIGNLHSLKKLDLSINNL-SGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
           L+    +S     +LK LDLS N   +  +     N+  L+ L LS   L         +
Sbjct: 81  LVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLE-----KSSV 132

Query: 325 GNFTQLQSLDFTSNKFSGEL-HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
                L                     L+     ++     + +    + +++     +L
Sbjct: 133 LPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANL 192

Query: 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
             ++ +  +E +     L  L  L  +    +L       T +    ++           
Sbjct: 193 ELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---------- 242

Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKR 503
             L     +    +S+ ++ G++     D S  +L AL++   +   F      +     
Sbjct: 243 --LVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFS 300

Query: 504 FLLTLDLSSNNLQGPLPVPPSRTVNYLV---SNNSFIGEIPSWLCKLDSLEILVLSHNNL 560
            +   + + +  +    + PS+   +L    SNN     +      L  LE L+L  N L
Sbjct: 301 NMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL 360

Query: 561 SGLLPRCLGSFSD--KLSILDLRANNF-FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL 617
              L +     +    L  LD+  N+  +            L  +++S N+    I R L
Sbjct: 361 K-ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL 419

Query: 618 INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
               +++ LD+  N+I+ I P  +  L  L  L + SN+   +     I    + L+ I 
Sbjct: 420 P--PRIKVLDLHSNKIKSI-PKQVVKLEALQELNVASNQLKSV--PDGIFDRLTSLQKIW 474

Query: 678 LSNNRF 683
           L  N +
Sbjct: 475 LHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  118 bits (298), Expect = 4e-28
 Identities = 96/555 (17%), Positives = 170/555 (30%), Gaps = 96/555 (17%)

Query: 254 SKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK 313
            K   L++S N +       I +L  L+ L +S N +     +  +    LE LDLS NK
Sbjct: 21  QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80

Query: 314 LSGEFPWSIVIGNFTQLQSLDFTSNKF-SGELHASIGNLRSLEVLAIGRCNFSGRIPSSL 372
           L       I       L+ LD + N F +  +    GN+  L+ L +   +        +
Sbjct: 81  LV-----KISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPI 135

Query: 373 RNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVV 432
            +L     L +   +Y    + +     L++    SL   + +       N        V
Sbjct: 136 AHLNISKVLLVLGETYGEKEDPE----GLQDFNTESLHIVFPT-------NKEFHFILDV 184

Query: 433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
            +++   +E  N              S     +    L + +   L+ +  + N      
Sbjct: 185 SVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT---LNNIETTWNSFIRIL 241

Query: 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEI 552
           Q +         +    +S+  LQG L                           L +L I
Sbjct: 242 QLVWHTT-----VWYFSISNVKLQGQLDFRDFDYSG----------------TSLKALSI 280

Query: 553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR 612
             +  +            FS  ++I +   +           K                 
Sbjct: 281 HQVVSDVFGFPQSYIYEIFS-NMNIKNFTVSGTRMVHMLCPSK----------------- 322

Query: 613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK 672
                   S    LD  +N + D      G L  L  LILQ N+   + +   +      
Sbjct: 323 -------ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 673 LRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLK 732
           L+ +D+S N  +                  T  L  L          +S           
Sbjct: 376 LQQLDISQNSVSYDEKKGDC--------SWTKSLLSLN---------MS----------- 407

Query: 733 MNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 792
            +N      +  +P  +  + L SN+    IP  +  L+ LQ LN+ +N L+        
Sbjct: 408 -SNILTDTIFRCLPPRIKVLDLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFD 465

Query: 793 NLTNLESLDLSNNNF 807
            LT+L+ + L  N +
Sbjct: 466 RLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  102 bits (256), Expect = 6e-23
 Identities = 106/524 (20%), Positives = 197/524 (37%), Gaps = 64/524 (12%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
             +P ++    + + LN+S +       S+IL L  L  L +S N    L+       ++
Sbjct: 13  IHVPKDL--SQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLD------ISV 64

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
            +    LE LDL          HN   L  ++                      L HLDL
Sbjct: 65  FKFNQELEYLDLS---------HN--KLVKISC----------------HPTVNLKHLDL 97

Query: 262 SLNELLGELPVS--IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEE-LDLSFNKLSGEF 318
           S N     LP+    GN+  LK L LS  +L       I +L   +  L L       E 
Sbjct: 98  SFN-AFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKED 156

Query: 319 PWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQL 378
           P  +   N   L  +  T+ +F   L  S+  + +LE+  I       +    L  L +L
Sbjct: 157 PEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKL 216

Query: 379 ITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN 438
            T     N                 L  +  + N    + ++  +TT   F++  ++   
Sbjct: 217 QTNPKLSNLT---------------LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261

Query: 439 LIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVL 498
            ++F +F  +   L  L +  +++   +  +      +  S +N+ +  ++G     ++ 
Sbjct: 262 QLDFRDFDYSGTSLKALSI--HQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLC 319

Query: 499 PGGKRFLLTLDLSSNNLQGPLPVPPSRTVN----YLVSNN-SFIGEIPSWLCKLDSLEIL 553
           P      L LD S+N L   +              L  N    + +I     ++ SL+ L
Sbjct: 320 PSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQL 379

Query: 554 VLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRI 613
            +S N++S    +   S++  L  L++ +N    TI        R+ ++DL  N  +  I
Sbjct: 380 DISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SI 436

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
           P+ ++    L+ L++  NQ++ +       L +L  + L +N +
Sbjct: 437 PKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 93.0 bits (231), Expect = 8e-20
 Identities = 88/479 (18%), Positives = 151/479 (31%), Gaps = 83/479 (17%)

Query: 125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFG-QIPSEILELVNLVSLDL 183
               LE+L+L+ N      I         L +L+LS ++F    I  E   +  L  L L
Sbjct: 67  FNQELEYLDLSHNKLVK--ISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGL 122

Query: 184 SLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ 243
           S        L+K +   +     +   L LG          +   L      SLH     
Sbjct: 123 STT-----HLEKSSVLPIAHLNISKVLLVLGETYGE---KEDPEGLQDFNTESLHIVFPT 174

Query: 244 GRIQSSLGNLSKLLHLDLSLNELLGEL-----------PVSIGNLHSLKKLDLSINNLSG 292
            +    + ++S     +L L+ +   L              +     L  L L+    + 
Sbjct: 175 NKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTW 234

Query: 293 ELPTSIQNLV---SLEELDLSFNKLSGEFPWSIVIGNFTQLQSL---DFTSNKFSGELHA 346
                I  LV   ++    +S  KL G+  +     + T L++L      S+ F      
Sbjct: 235 NSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSY 294

Query: 347 SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEV 406
                 ++ +                  ++  + LD S N    T+  +     L  LE 
Sbjct: 295 IYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENC--GHLTELET 352

Query: 407 LSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKI 466
           L L  N L  L+K+                               L  LD+S N +    
Sbjct: 353 LILQMNQLKELSKI----------------------AEMTTQMKSLQQLDISQNSVSYDE 390

Query: 467 PSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRT 526
                   T++L +LN+S N+LT       +       +  LDL SN ++          
Sbjct: 391 KKGDCS-WTKSLLSLNMSSNILTDT-----IFRCLPPRIKVLDLHSNKIK---------- 434

Query: 527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
                        IP  + KL++L+ L ++ N L  +        +  L  + L  N +
Sbjct: 435 ------------SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLT-SLQKIWLHTNPW 480

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 86.8 bits (215), Expect = 8e-18
 Identities = 54/324 (16%), Positives = 108/324 (33%), Gaps = 15/324 (4%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLE-WLNLAFNDFKSSEIPSEIINLSRLSYLNLS 160
           ++ K+ L     YG       L         +    N      +   +  ++ L   N+ 
Sbjct: 139 NISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIK 198

Query: 161 HSSFFGQIPSEILELVNLVS----LDLSLNSGYGLELQKPNFANLVEKLS----NLETLD 212
                 +    +  L  L +     +L+LN+             LV   +    ++  + 
Sbjct: 199 CVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258

Query: 213 LGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPV 272
           L          ++  +L +L+   + S              S +   + +++       +
Sbjct: 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHML 318

Query: 273 SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS 332
               +     LD S N L+  +  +  +L  LE L L  N+L      + +      LQ 
Sbjct: 319 CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQ 378

Query: 333 LDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGT 391
           LD + N  S +         +SL  L +     +  I   L    ++  LDL  N  +  
Sbjct: 379 LDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-- 434

Query: 392 MELDFLLVSLKNLEVLSLSSNWLS 415
             +   +V L+ L+ L+++SN L 
Sbjct: 435 -SIPKQVVKLEALQELNVASNQLK 457

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 82.2 bits (203), Expect = 2e-16
 Identities = 75/555 (13%), Positives = 148/555 (26%), Gaps = 143/555 (25%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
               L++S N +S    + I +L  L  L +S N++       + I  F   Q L+    
Sbjct: 22  KTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQELE---- 72

Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
                L  S   L  +                S      L  LDLS N++   + +    
Sbjct: 73  ----YLDLSHNKLVKI----------------SCHPTVNLKHLDLSFNAFD-ALPICKEF 111

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
            ++  L+ L LS+  L                                      +LL L 
Sbjct: 112 GNMSQLKFLGLSTTHLEK-----------------------SSVLPIAHLNISKVLLVLG 148

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
                 + P  L D +T++L  +  ++                       +L  +N++  
Sbjct: 149 ETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFIL--------DVSVKTVANLELSNIKC- 199

Query: 519 LPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSIL 578
                        +  S+   I + L     L  L L++   +      +       ++ 
Sbjct: 200 ---------VLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVW 250

Query: 579 DLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFP 638
               +N           +      D S             +   L    +  +       
Sbjct: 251 YFSISN------VKLQGQLDFRDFDYSGT-----------SLKALSIHQVVSDVFGFPQS 293

Query: 639 SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAM 698
                  N+ +     +    +          S    +D SNN  T     ++       
Sbjct: 294 YIYEIFSNMNIKNFTVSGTRMV--HMLCPSKISPFLHLDFSNNLLT-DTVFENCGHL--- 347

Query: 699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR 758
                ++L+ L                     L+MN              L  +   +  
Sbjct: 348 -----TELETL--------------------ILQMNQ-------------LKELSKIAEM 369

Query: 759 FDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL-GNLTNLESLDLSNNNFLGQIPQQLVE 817
                      +K LQ L++  N++             +L SL++S+N     I + L  
Sbjct: 370 TT--------QMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419

Query: 818 LTFLEFFNVSDNYLT 832
              ++  ++  N + 
Sbjct: 420 PPRIKVLDLHSNKIK 434

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 63.0 bits (153), Expect = 2e-10
 Identities = 64/349 (18%), Positives = 116/349 (33%), Gaps = 36/349 (10%)

Query: 506 LTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
             +D S N L   P  +    T+  + S N       S +  L  L IL++SHN +  L 
Sbjct: 3   FLVDRSKNGLIHVPKDLSQKTTILNI-SQNYISELWTSDILSLSKLRILIISHNRIQYLD 61

Query: 565 PRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI--NC 620
                 F    +L  LDL  +N    I         L  +DLS N F   +P      N 
Sbjct: 62  I---SVFKFNQELEYLDLS-HNKLVKIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNM 114

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI-DCGFSKLRIIDLS 679
           S+L+FL +    +       +  L    VL++    +        + D     L I+  +
Sbjct: 115 SQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPT 174

Query: 680 NNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI 739
           N  F   +   S      +++ N   +            L   +      +L +NN    
Sbjct: 175 NKEFH-FILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNN--IE 231

Query: 740 MTYDKVPDI--------LTSIILSSNRFDGMIPTSIA-----NLKGLQVLNLDNNNLQGH 786
            T++    I        +    +S+ +  G +          +LK L +  + ++     
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFP 291

Query: 787 IPSCLGNLTNLESLDLSNNN---FLGQIPQQLVELTFLEFFNVSDNYLT 832
                   +N+   + + +         P ++     L   + S+N LT
Sbjct: 292 QSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL---DFSNNLLT 337

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 49.5 bits (118), Expect = 4e-06
 Identities = 24/97 (24%), Positives = 42/97 (43%), Gaps = 4/97 (4%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +    T + +S N    +  + I +L  L++L + +N +Q    S       LE LDLS+
Sbjct: 19  LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH 78

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQF 841
           N  +       V L  L   ++S N     +P  ++F
Sbjct: 79  NKLVKISCHPTVNLKHL---DLSFNAFDA-LPICKEF 111

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 42.5 bits (100), Expect = 5e-04
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 4/91 (4%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG-HIPSCLGNLTNLESLDLSNNNF 807
           L  + LS N+   +   S      L+ L+L  N      I    GN++ L+ L LS  + 
Sbjct: 71  LEYLDLSHNKLVKI---SCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHL 127

Query: 808 LGQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
                  +  L   +   V            
Sbjct: 128 EKSSVLPIAHLNISKVLLVLGETYGEKEDPE 158

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  122 bits (307), Expect = 2e-30
 Identities = 54/298 (18%), Positives = 106/298 (35%), Gaps = 23/298 (7%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
            +  +   +   S++  +     +  ++  L L    L     + L   +KL  L+LS N
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSN 68

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
             L E    + +L +L+ LDL+ N +       +    S+E L  + N +S      +  
Sbjct: 69  V-LYETL-DLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNIS-----RVSC 116

Query: 325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSG-RIPSSLRNLTQLITLDL 383
                 +++   +NK +       G    ++ L +               +   L  L+L
Sbjct: 117 SRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNL 176

Query: 384 SQNSYRGTMELDFL--LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
             N       +  +   V    L+ L LSSN L+ +     +      T + LR+  L+ 
Sbjct: 177 QYNF------IYDVKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAG--VTWISLRNNKLVL 228

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP 499
               L+   +L   DL  N  H          + +  +    +   LTG +++   +P
Sbjct: 229 IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  120 bits (302), Expect = 7e-30
 Identities = 60/339 (17%), Positives = 103/339 (30%), Gaps = 67/339 (19%)

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
           I     N ++     ++ + L   L     +  ++K+LDLS N LS      +     LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365
            L+LS N L         + + + L++LD  +N         +    S+E L     N S
Sbjct: 62  LLNLSSNVLYETLD----LESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNIS 112

Query: 366 GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
               S  +       + L+ N      +LD        ++ L L  N +           
Sbjct: 113 RVSCSRGQGKKN---IYLANNKITMLRDLDEG--CRSRVQYLDLKLNEID---------- 157

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
                         + F     +   L  L+L  N I+  +   +       L  L+LS 
Sbjct: 158 -------------TVNFAELAASSDTLEHLNLQYNFIY-DVKGQV---VFAKLKTLDLSS 200

Query: 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC 545
           N L     +     G    +  + L +N L                        I   L 
Sbjct: 201 NKLAFMGPEFQSAAG----VTWISLRNNKLV----------------------LIEKALR 234

Query: 546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN 584
              +LE   L  N       R   S + ++  +  +   
Sbjct: 235 FSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (293), Expect = 1e-28
 Identities = 54/342 (15%), Positives = 112/342 (32%), Gaps = 26/342 (7%)

Query: 144 IPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE 203
           I     N +R     ++ SS    + S      N+  LDLS N    +       A  + 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS------AADLA 55

Query: 204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSL 263
             + LE L+L    +      +L +LS+L  L L++  +       L     +  L  + 
Sbjct: 56  PFTKLELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAAN 108

Query: 264 NELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323
           N  +  +  S G     K + L+ N ++            ++ LDL  N++     ++ +
Sbjct: 109 NN-ISRVSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAEL 164

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
             +   L+ L+   N    ++   +     L+ L +     +  +    ++   +  + L
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISL 221

Query: 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
             N       ++  L   +NLE   L  N     T     + +Q+   V  ++   +   
Sbjct: 222 RNNKLV---LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
           N  +     +           +            L   +  H
Sbjct: 279 NEEECT---VPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 9e-26
 Identities = 56/339 (16%), Positives = 120/339 (35%), Gaps = 31/339 (9%)

Query: 95  ECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRL 154
           E  +N        +++S L      +S      +++ L+L+ N        +++   ++L
Sbjct: 4   EIKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQIS-AADLAPFTKL 60

Query: 155 SYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLG 214
             LNLS +        ++  L  L +LDL+ N      +Q+      +    ++ETL   
Sbjct: 61  ELLNLSSNVL--YETLDLESLSTLRTLDLNNN-----YVQE------LLVGPSIETLHAA 107

Query: 215 YVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVS 273
             +I S +    +       + L +  +        G  S++ +LDL LNE+        
Sbjct: 108 NNNI-SRVS--CSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL 164

Query: 274 IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333
             +  +L+ L+L  N +  ++   +     L+ LDLS NKL+          +   +  +
Sbjct: 165 AASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF---MGPEFQSAAGVTWI 219

Query: 334 DFTSNKFSGELHASIGNLRSLEVLAIGRCNFS-GRIPSSLRNLTQLITLDLSQNSYRGTM 392
              +NK    +  ++   ++LE   +    F  G +        ++ T+           
Sbjct: 220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQ 278

Query: 393 ELDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
             +      L          L + +   L  +  +    
Sbjct: 279 NEEECTVPTLGHYGAYCCEDLPAPFADRLIALGHHHHHH 317

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 97.4 bits (243), Expect = 3e-22
 Identities = 65/345 (18%), Positives = 116/345 (33%), Gaps = 70/345 (20%)

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
           I    +N  +     ++ +S      L  L  S  N++ L LS N LS ++         
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSL--KQALASLRQSAWNVKELDLSGNPLSQIS--------- 50

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
                             L     L LL+LSSN ++  +    L      L  L+L++N 
Sbjct: 51  ---------------AADLAPFTKLELLNLSSNVLYETLDLESL----STLRTLDLNNNY 91

Query: 488 LTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKL 547
           +         L  G   + TL  ++NN+     V  S                     + 
Sbjct: 92  VQ-------ELLVGPS-IETLHAANNNISR---VSCS---------------------RG 119

Query: 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFG-TIPNTFMKESRLGMIDLSH 606
              + + L++N ++ L     G  S ++  LDL+ N                L  ++L +
Sbjct: 120 QGKKNIYLANNKITMLRDLDEGCRS-RVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           N     +    +  +KL+ LD+  N++  +      +   +T + L++NK   I    + 
Sbjct: 179 NFIY-DVK-GQVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVLI---EKA 232

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQD 711
                 L   DL  N F        F     ++ V    +K L  
Sbjct: 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTG 277

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 93.1 bits (232), Expect = 1e-20
 Identities = 53/261 (20%), Positives = 97/261 (37%), Gaps = 20/261 (7%)

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
            +  +I  ++ ++L   L     S    +  LDL  N             ++L +++LS 
Sbjct: 9   GNRYKIEKVTDSSLKQALASLRQSAW-NVKELDLSGNPLSQISAADLAPFTKLELLNLSS 67

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           N+        L + S L  LD+ +N ++++        P++  L   +N    +      
Sbjct: 68  NVLYE--TLDLESLSTLRTLDLNNNYVQELLV-----GPSIETLHAANNNISRVSCS--- 117

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726
                  + I L+NN+ T  L      C + ++ +   DLK  +        L +     
Sbjct: 118 --RGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYL---DLKLNEIDTVNFAELAASSDTL 171

Query: 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH 786
              +L+ N    +         L ++ LSSN+    +     +  G+  ++L NN L   
Sbjct: 172 EHLNLQYNFIYDVKGQVVFAK-LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-L 228

Query: 787 IPSCLGNLTNLESLDLSNNNF 807
           I   L    NLE  DL  N F
Sbjct: 229 IEKALRFSQNLEHFDLRGNGF 249

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 85.4 bits (212), Expect = 4e-18
 Identities = 44/277 (15%), Positives = 84/277 (30%), Gaps = 53/277 (19%)

Query: 573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ 632
           ++  I  +  ++    + +       +  +DLS N         L   +KLE L++  N 
Sbjct: 10  NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69

Query: 633 IRDIFP-----------------SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRI 675
           + +                      L   P++  L   +N    +             + 
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCS-----RGQGKKN 124

Query: 676 IDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNN 735
           I L+NN+ T  L      C + ++ +   DLK  +        L +              
Sbjct: 125 IYLANNKIT-MLRDLDEGCRSRVQYL---DLKLNEIDTVNFAELAASSDT---------- 170

Query: 736 KGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT 795
                        L  + L  N     +   +     L+ L+L +N L   +     +  
Sbjct: 171 -------------LEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAA 214

Query: 796 NLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
            +  + L NN  L  I + L     LE F++  N   
Sbjct: 215 GVTWISLRNNK-LVLIEKALRFSQNLEHFDLRGNGFH 250

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.6 bits (132), Expect = 5e-08
 Identities = 18/74 (24%), Positives = 31/74 (41%)

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
           I     N    ++  + +++L+  + S   +  N++ LDLS N         L   T LE
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 823 FFNVSDNYLTGPIP 836
             N+S N L   + 
Sbjct: 62  LLNLSSNVLYETLD 75

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 9e-07
 Identities = 22/200 (11%), Positives = 63/200 (31%), Gaps = 44/200 (22%)

Query: 633 IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692
           I +I  +         +  +  +     +    +      ++ +DLS N  + ++ +   
Sbjct: 2   IHEIKQN----GNRYKIEKVTDSSLKQAL--ASLRQSAWNVKELDLSGNPLS-QISAADL 54

Query: 693 LCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSI 752
                      + L+ L          LS            N   + +  + +   L ++
Sbjct: 55  --------APFTKLELLN---------LSS-----------NVLYETLDLESLST-LRTL 85

Query: 753 ILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP 812
            L++N         +     ++ L+  NNN+   +          +++ L+NN       
Sbjct: 86  DLNNNYV-----QELLVGPSIETLHAANNNIS-RVSC--SRGQGKKNIYLANNKITMLRD 137

Query: 813 QQLVELTFLEFFNVSDNYLT 832
                 + +++ ++  N + 
Sbjct: 138 LDEGCRSRVQYLDLKLNEID 157

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  125 bits (316), Expect = 4e-30
 Identities = 73/387 (18%), Positives = 131/387 (33%), Gaps = 35/387 (9%)

Query: 131 WLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG 190
             N+     +   I S +        +++   +       E + L N   +    ++   
Sbjct: 6   RYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRK 65

Query: 191 LELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL 250
           L       A L++    +E L+L  + I     +  A   ++  L +    ++       
Sbjct: 66  LP------AALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF 119

Query: 251 GNLSKLLHLDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL 309
            N+  L  L L  N+ L  LP  I  N   L  L +S NNL      + Q   SL+ L L
Sbjct: 120 QNVPLLTVLVLERND-LSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQL 178

Query: 310 SFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP 369
           S N+L+      + +     L   + + N  S     ++    ++E L     + +  + 
Sbjct: 179 SSNRLT-----HVDLSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVR 227

Query: 370 SSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF 429
             +    +L  L L  N+   T  L     +   L  + LS N L  +         +  
Sbjct: 228 GPV--NVELTILKLQHNNLTDTAWLL----NYPGLVEVDLSYNELEKIMYHPFVKMQR-L 280

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
             + + +  L+    + +    L +LDLS N +   +      P    L  L L HN + 
Sbjct: 281 ERLYISNNRLVALNLYGQPIPTLKVLDLSHNHLL-HVERNQ--PQFDRLENLYLDHNSIV 337

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
                          L  L LS N+  
Sbjct: 338 TLK------LSTHHTLKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (298), Expect = 7e-28
 Identities = 83/467 (17%), Positives = 149/467 (31%), Gaps = 76/467 (16%)

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
           I S+L        + + +             L++ K +    + +       + +   +E
Sbjct: 19  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365
            L+L+  ++  E   +        +Q L    N            +R L           
Sbjct: 79  LLNLNDLQIE-EID-TYAFAYAHTIQKLYMGFNA-----------IRYLP---------- 115

Query: 366 GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
              P   +N+  L  L L +N    +     +  +   L  LS+S+N L  +        
Sbjct: 116 ---PHVFQNVPLLTVLVLERN--DLSSLPRGIFHNTPKLTTLSMSNNNLERIE------- 163

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
                             +  +    L  L LSSNR+   +   L+     +L   N+S+
Sbjct: 164 -----------------DDTFQATTSLQNLQLSSNRLT-HVDLSLI----PSLFHANVSY 201

Query: 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSWL 544
           NLL+     +         +  LD S N++     PV    T+  L  NN  + +   WL
Sbjct: 202 NLLSTLAIPI--------AVEELDASHNSINVVRGPVNVELTILKLQHNN--LTDTA-WL 250

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
                L  + LS+N L  ++         +L  L +  NN    +         L ++DL
Sbjct: 251 LNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYIS-NNRLVALNLYGQPIPTLKVLDL 308

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
           SHN     + R+     +LE L +  N I  +      T   L  L L  N +       
Sbjct: 309 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSHNDWDCNSLRA 364

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQD 711
                 ++  + D   +            C  + K      L+Y+  
Sbjct: 365 LFR-NVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIAL 410

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  118 bits (296), Expect = 1e-27
 Identities = 75/444 (16%), Positives = 149/444 (33%), Gaps = 38/444 (8%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSF 164
            D+        +        L + + +    +     ++P+ ++ +  ++  LNL+    
Sbjct: 30  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQ- 86

Query: 165 FGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIP 223
             +I +        +  L +  N+   L        ++ + +  L  L L    + S   
Sbjct: 87  IEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPR 140

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283
               N   LT LS+ +  L+     +    + L +L LS N L     V +  + SL   
Sbjct: 141 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 197

Query: 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE 343
           ++S N L     +++   +++EELD S N ++      +      +L  L    N  +  
Sbjct: 198 NVSYNLL-----STLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLTDT 247

Query: 344 LHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKN 403
             A + N   L  + +        +      + +L  L +S N       L+     +  
Sbjct: 248 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPT 302

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
           L+VL LS N L  + +            + L   +++     L   H L  L LS N   
Sbjct: 303 LKVLDLSHNHLLHVERNQPQFDR--LENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 358

Query: 464 G----KIPSWLLDPSTQNLSA-LNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
                 +   +  P+  +      + + L  G   +    P   R L  + L+S   +  
Sbjct: 359 CNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALTSVVEKVQ 418

Query: 519 LPVPPSRTVNYLVSNNSFIGEIPS 542
                    + + S  S    I  
Sbjct: 419 RAQGRCSATDTINSVQSLSHYITQ 442

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  113 bits (284), Expect = 3e-26
 Identities = 90/452 (19%), Positives = 145/452 (32%), Gaps = 82/452 (18%)

Query: 175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTF 234
             + V  D+ ++              L    +N + +     ++R      L +   +  
Sbjct: 24  QYDCVFYDVHIDMQTQDVYFGFEDITL----NNQKIVTFKNSTMRKLPAALLDSFRQVEL 79

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGE 293
           L+L+   ++     +      +  L +  N  +  LP  +  N+  L  L L  N+LS  
Sbjct: 80  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNA-IRYLPPHVFQNVPLLTVLVLERNDLS-S 137

Query: 294 LPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLR 352
           LP  I  N   L  L +S N L             T LQ+L  +SN+ +   H  +  + 
Sbjct: 138 LPRGIFHNTPKLTTLSMSNNNLE-RIEDDT-FQATTSLQNLQLSSNRLT---HVDLSLIP 192

Query: 353 SLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           SL        N S  + S+L     +  LD S NS                L +L L  N
Sbjct: 193 SLFHA-----NVSYNLLSTLAIPIAVEELDASHNSINVVRGPVN-----VELTILKLQHN 242

Query: 413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD 472
                                    NL +      N   L+ +DLS N +  KI      
Sbjct: 243 -------------------------NLTDTAWL-LNYPGLVEVDLSYNELE-KIMYHPFV 275

Query: 473 PSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS 532
              Q L  L +S+N L   +     +P     L  LDLS N+L                 
Sbjct: 276 -KMQRLERLYISNNRLVALNLYGQPIPT----LKVLDLSHNHLL---------------- 314

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT-IPN 591
                  +     + D LE L L HN++  L      +    L  L L  N++    +  
Sbjct: 315 ------HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT----LKNLTLSHNDWDCNSLRA 364

Query: 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
            F   +R  + D   +          + C + 
Sbjct: 365 LFRNVARPAVDDADQHCKIDYQLEHGLCCKES 396

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 68.0 bits (166), Expect = 7e-12
 Identities = 38/255 (14%), Positives = 78/255 (30%), Gaps = 64/255 (25%)

Query: 578 LDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIF 637
           +D++  + +    +  +  +   ++   ++  +      L +  ++E L++ D QI +I 
Sbjct: 34  IDMQTQDVYFGFEDITL--NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEID 91

Query: 638 PSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNA 697
                    +  L +  N    +   P +      L ++ L  N  +  LP   F     
Sbjct: 92  TYAFAYAHTIQKLYMGFNAIRYL--PPHVFQNVPLLTVLVLERNDLS-SLPRGIF----- 143

Query: 698 MKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSN 757
               NT  L  L                                            +S+N
Sbjct: 144 ---HNTPKLTTLS-------------------------------------------MSNN 157

Query: 758 RFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVE 817
             + +   +      LQ L L +N L  H+   L  + +L   ++S N         L  
Sbjct: 158 NLERIEDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAI 209

Query: 818 LTFLEFFNVSDNYLT 832
              +E  + S N + 
Sbjct: 210 PIAVEELDASHNSIN 224

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 46.1 bits (109), Expect = 4e-05
 Identities = 40/238 (16%), Positives = 82/238 (34%), Gaps = 19/238 (7%)

Query: 117 INSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSFFGQIPSEILEL 175
           +  ++ L     L  ++L++N+    +I       + RL  L +S++     +      +
Sbjct: 244 LTDTAWLLNYPGLVEVDLSYNEL--EKIMYHPFVKMQRLERLYISNNR-LVALNLYGQPI 300

Query: 176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFL 235
             L  LDLS N    L   + N          LE L L + SI  T+   L+   +L  L
Sbjct: 301 PTLKVLDLSHNH---LLHVERNQPQ----FDRLENLYLDHNSI-VTLK--LSTHHTLKNL 350

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP 295
           +L           +L     +    +   +   ++   + +    K+ D         L 
Sbjct: 351 TLSHNDWDCNSLRAL--FRNVARPAVDDADQHCKIDYQLEHGLCCKESD---KPYLDRLL 405

Query: 296 TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS 353
             I     +E++  +  + S     + V      +        + + +L A +  LR+
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELRA 463

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  122 bits (307), Expect = 5e-30
 Identities = 64/360 (17%), Positives = 126/360 (35%), Gaps = 33/360 (9%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSSF 164
            D+        +        L + + +    +     ++P+ ++ +  ++  LNL+    
Sbjct: 24  YDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTM--RKLPAALLDSFRQVELLNLNDLQ- 80

Query: 165 FGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIP 223
             +I +        +  L +  N+   L        ++ + +  L  L L    + S   
Sbjct: 81  IEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPR 134

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283
               N   LT LS+ +  L+     +    + L +L LS N L     V +  + SL   
Sbjct: 135 GIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191

Query: 284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE 343
           ++S N L     +++   +++EELD S N ++      +      +L  L    N  +  
Sbjct: 192 NVSYNLL-----STLAIPIAVEELDASHNSIN-----VVRGPVNVELTILKLQHNNLTDT 241

Query: 344 LHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKN 403
             A + N   L  + +        +      + +L  L +S N       L+     +  
Sbjct: 242 --AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV---ALNLYGQPIPT 296

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
           L+VL LS N L  + +            + L   +++     L   H L  L LS N   
Sbjct: 297 LKVLDLSHNHLLHVERNQPQFDR--LENLYLDHNSIVTLK--LSTHHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  120 bits (303), Expect = 2e-29
 Identities = 75/413 (18%), Positives = 136/413 (32%), Gaps = 75/413 (18%)

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
           I S+L        + + +             L++ K +    + +       + +   +E
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS 365
            L+L+  ++  E   +        +Q L    N            +R L           
Sbjct: 73  LLNLNDLQIE-EID-TYAFAYAHTIQKLYMGFNA-----------IRYLP---------- 109

Query: 366 GRIPSSLRNLTQLITLDLSQNSYRGTMELD-FLLVSLKNLEVLSLSSNWLSLLTKVTSNT 424
              P   +N+  L  L L +N       L   +  +   L  LS+S+N L  +       
Sbjct: 110 ---PHVFQNVPLLTVLVLERNDLS---SLPRGIFHNTPKLTTLSMSNNNLERIE------ 157

Query: 425 TSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484
                              +  +    L  L LSSNR+   +   L+     +L   N+S
Sbjct: 158 ------------------DDTFQATTSLQNLQLSSNRLT-HVDLSLI----PSLFHANVS 194

Query: 485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL 544
           +NLL+               +  LD S N++   +  P +  +  L   ++ + +   WL
Sbjct: 195 YNLLSTLAIP--------IAVEELDASHNSINV-VRGPVNVELTILKLQHNNLTDTA-WL 244

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
                L  + LS+N L  ++         +L  L +  NN    +         L ++DL
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQ-RLERLYIS-NNRLVALNLYGQPIPTLKVLDL 302

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
           SHN     + R+     +LE L +  N I  +      T   L  L L  N +
Sbjct: 303 SHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKL---STHHTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  118 bits (298), Expect = 7e-29
 Identities = 74/384 (19%), Positives = 136/384 (35%), Gaps = 53/384 (13%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLA--NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
             +    D+        +        L++   ++  +  ++    + L +  ++  L+L+
Sbjct: 18  QYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLN 77

Query: 263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI 322
             ++      +    H+++KL +  N +    P   QN+  L  L L  N LS   P  I
Sbjct: 78  DLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGI 136

Query: 323 VIGNFTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
              N  +L +L  ++N     +         SL+ L +     +  +  S   +  L   
Sbjct: 137 -FHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDLS--LIPSLFHA 191

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
           ++S N           L     +E L  S N ++++        + + T++ L+  NL +
Sbjct: 192 NVSYNLLS-------TLAIPIAVEELDASHNSINVV----RGPVNVELTILKLQHNNLTD 240

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGG 501
                 N   L+ +DLS N +  KI         Q L  L +S+N L   +     +P  
Sbjct: 241 TAWL-LNYPGLVEVDLSYNELE-KIMYHPFV-KMQRLERLYISNNRLVALNLYGQPIPT- 296

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
              L  LDLS N+L                        +     + D LE L L HN++ 
Sbjct: 297 ---LKVLDLSHNHLL----------------------HVERNQPQFDRLENLYLDHNSIV 331

Query: 562 GLLPRCLGSFSDKLSILDLRANNF 585
            L           L  L L  N++
Sbjct: 332 TLKLSTH----HTLKNLTLSHNDW 351

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  108 bits (271), Expect = 2e-25
 Identities = 72/399 (18%), Positives = 130/399 (32%), Gaps = 73/399 (18%)

Query: 294 LPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS 353
           + +++Q      ++ +        F +  +       + + F ++       A + + R 
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLPAALLDSFRQ 70

Query: 354 LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW 413
           +E+L +           +      +  L +  N          +  ++  L VL L  N 
Sbjct: 71  VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFN--AIRYLPPHVFQNVPLLTVLVLERND 128

Query: 414 LSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDP 473
           LS L                              N   L  L +S+N +  +I       
Sbjct: 129 LSSLP------------------------RGIFHNTPKLTTLSMSNNNLE-RIEDDTFQA 163

Query: 474 STQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSN 533
           +T +L  L LS N LT  D            L   ++S N L                  
Sbjct: 164 TT-SLQNLQLSSNRLTHVD------LSLIPSLFHANVSYNLL------------------ 198

Query: 534 NSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTF 593
                   S L    ++E L  SHN+++ +           L+IL L+ NN   T     
Sbjct: 199 --------STLAIPIAVEELDASHNSINVVRGPVNVE----LTILKLQHNNL--TDTAWL 244

Query: 594 MKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653
           +    L  +DLS+N  +  +    +   +LE L I +N++  +   +   +P L VL L 
Sbjct: 245 LNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLS 303

Query: 654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692
            N    +    R    F +L  + L +N     L   + 
Sbjct: 304 HNHLLHV---ERNQPQFDRLENLYLDHNSIV-TLKLSTH 338

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  105 bits (264), Expect = 2e-24
 Identities = 74/465 (15%), Positives = 142/465 (30%), Gaps = 125/465 (26%)

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
           I S+L+       + +   +       + +  +L N ++++  ++ +  L          
Sbjct: 13  IDSNLQYDCVFYDVHIDMQTQDVYFGFEDI--TLNNQKIVTFKNSTMRKLP--------- 61

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
                             L +   + LL+L+  +I  +I ++        +  L +  N 
Sbjct: 62  ---------------AALLDSFRQVELLNLNDLQIE-EIDTYAFA-YAHTIQKLYMGFNA 104

Query: 488 LTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKL 547
           +      +         L  L L  N+L               +    F           
Sbjct: 105 IRYLPPHV---FQNVPLLTVLVLERNDLS-------------SLPRGIFHN--------T 140

Query: 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607
             L  L +S+NNL  +      + +  L  L L ++N    +  + +    L   ++S+N
Sbjct: 141 PKLTTLSMSNNNLERIEDDTFQATT-SLQNLQL-SSNRLTHVDLSLIP--SLFHANVSYN 196

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
           L       +L     +E LD   N I  +          LT+L LQ N     + +    
Sbjct: 197 LLS-----TLAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNN----LTDTAWL 244

Query: 668 CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
             +  L  +DLS N    K+    F        V    L+ L                  
Sbjct: 245 LNYPGLVEVDLSYNELE-KIMYHPF--------VKMQRLERLY----------------- 278

Query: 728 DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
                                     +S+NR    +      +  L+VL+L +N+L  H+
Sbjct: 279 --------------------------ISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HV 310

Query: 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
                    LE+L L +N+ +  +         L+   +S N   
Sbjct: 311 ERNQPQFDRLENLYLDHNS-IVTLKLST--HHTLKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 70.1 bits (172), Expect = 8e-13
 Identities = 35/250 (14%), Positives = 79/250 (31%), Gaps = 38/250 (15%)

Query: 583 NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLG 642
              +  I +    +     + +             I  +  + +   ++ +R +  + L 
Sbjct: 7   QPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLD 66

Query: 643 TLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVN 702
           +   + +L L   +   I  +         ++ + +  N     LP   F         N
Sbjct: 67  SFRQVELLNLNDLQIEEI--DTYAFAYAHTIQKLYMGFNAIR-YLPPHVF--------QN 115

Query: 703 TSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGM 762
              L  L         L  +++++    +  N              LT++ +S+N  + +
Sbjct: 116 VPLLTVL--------VLERNDLSSLPRGIFHNTPK-----------LTTLSMSNNNLERI 156

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
              +      LQ L L +N L  H+   L  + +L   ++S N         L     +E
Sbjct: 157 EDDTFQATTSLQNLQLSSNRLT-HVD--LSLIPSLFHANVSYNLL-----STLAIPIAVE 208

Query: 823 FFNVSDNYLT 832
             + S N + 
Sbjct: 209 ELDASHNSIN 218

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  119 bits (299), Expect = 2e-28
 Identities = 79/337 (23%), Positives = 126/337 (37%), Gaps = 28/337 (8%)

Query: 89  CSWDG--VECSENT---------GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFN 137
           CS     V C                  LDL  + +     +        HLE L L  N
Sbjct: 9   CSAQDRAVLCHRKRFVAVPEGIPTETRLLDLGKNRI--KTLNQDEFASFPHLEELELNEN 66

Query: 138 DFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQK 195
               S +      NL  L  L L  +     IP  +   L NL  LD+S N    L    
Sbjct: 67  IV--SAVEPGAFNNLFNLRTLGLRSNR-LKLIPLGVFTGLSNLTKLDISENKIVILL--- 120

Query: 196 PNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSK 255
                + + L NL++L++G   +        + L+SL  L+L  C L      +L +L  
Sbjct: 121 ---DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHG 177

Query: 256 LLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315
           L+ L L    +      S   L+ LK L++S       +  +    ++L  L ++   L+
Sbjct: 178 LIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 316 GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNL 375
              P+   + +   L+ L+ + N  S    + +  L  L+ + +     +   P + R L
Sbjct: 238 -AVPYL-AVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGL 295

Query: 376 TQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
             L  L++S N      E  F   S+ NLE L L SN
Sbjct: 296 NYLRVLNVSGNQLTTLEESVF--HSVGNLETLILDSN 330

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (296), Expect = 4e-28
 Identities = 79/353 (22%), Positives = 123/353 (34%), Gaps = 47/353 (13%)

Query: 167 QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL 226
            +P  I        LDL  N      L +  FA+      +LE L+L    + +  P   
Sbjct: 25  AVPEGIPT--ETRLLDLGKNRI--KTLNQDEFASF----PHLEELELNENIVSAVEPGAF 76

Query: 227 ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286
            NL +L  L L S  L+         LS L  LD+S N+++  L     +L++LK L++ 
Sbjct: 77  NNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVG 136

Query: 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDFTSNKFSGE 343
            N+L      +   L SLE+L L    L+     SI          L  L       +  
Sbjct: 137 DNDLVYISHRAFSGLNSLEQLTLEKCNLT-----SIPTEALSHLHGLIVLRLRHLNINAI 191

Query: 344 LHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKN 403
              S   L  L+VL I    +   +  +      L +L ++  +      L      L  
Sbjct: 192 RDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV--RHLVY 249

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
           L  L+LS N +S +                          + L     L  + L   ++ 
Sbjct: 250 LRFLNLSYNPISTIE------------------------GSMLHELLRLQEIQLVGGQLA 285

Query: 464 GKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
             +  +        L  LN+S N LT  ++ +         L TL L SN L 
Sbjct: 286 -VVEPYAFR-GLNYLRVLNVSGNQLTTLEESVF---HSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (285), Expect = 1e-26
 Identities = 78/360 (21%), Positives = 129/360 (35%), Gaps = 62/360 (17%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
           +    LDLG   I++      A+   L  L L+   +      +  NL  L  L L  N 
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 266 LLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
           L   +P+ +   L +L KLD+S N +   L    Q+L +L+ L++  N L       I  
Sbjct: 92  L-KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-----YISH 145

Query: 325 GNF---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
             F     L+ L       +     ++ +L  L VL +   N +     S + L +L  L
Sbjct: 146 RAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVL 205

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
           ++S   Y  TM  + L     NL  LS++   L+ +                        
Sbjct: 206 EISHWPYLDTMTPNCL--YGLNLTSLSITHCNLTAVP----------------------- 240

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGG 501
               +++  +L  L+LS N I   I   +L      L  + L    L   +        G
Sbjct: 241 -YLAVRHLVYLRFLNLSYNPIS-TIEGSMLHE-LLRLQEIQLVGGQLAVVEPYAFR---G 294

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
             +L  L++S N L               +  + F          + +LE L+L  N L+
Sbjct: 295 LNYLRVLNVSGNQLT-------------TLEESVFHS--------VGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  113 bits (284), Expect = 2e-26
 Identities = 66/331 (19%), Positives = 106/331 (32%), Gaps = 39/331 (11%)

Query: 506 LTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSW-LCKLDSLEILVLSHNNLSGL 563
             +          P  +P    +  L  N   I  +          LE L L+ N +S +
Sbjct: 14  RAVLCHRKRFVAVPEGIPTETRLLDLGKNR--IKTLNQDEFASFPHLEELELNENIVSAV 71

Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
            P    +    L  L LR+N         F   S L  +D+S N     +     +   L
Sbjct: 72  EPGAFNNLF-NLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNL 130

Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
           + L++GDN +  I       L +L  L L+      I            L ++ L +   
Sbjct: 131 KSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSI--PTEALSHLHGLIVLRLRHLNI 188

Query: 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD 743
              +   SF             LK L                     +        MT +
Sbjct: 189 N-AIRDYSFKR--------LYRLKVL--------------------EISHWPYLDTMTPN 219

Query: 744 KVPDI-LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 802
            +  + LTS+ ++      +   ++ +L  L+ LNL  N +     S L  L  L+ + L
Sbjct: 220 CLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQL 279

Query: 803 SNNNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
                L  +       L +L   NVS N LT
Sbjct: 280 VGGQ-LAVVEPYAFRGLNYLRVLNVSGNQLT 309

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  110 bits (277), Expect = 1e-25
 Identities = 71/395 (17%), Positives = 125/395 (31%), Gaps = 89/395 (22%)

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
             +P  +   +    L L    ++   Q    +   L  L+L+ N +    P +  NL +
Sbjct: 24  VAVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 280 LKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           L+ L L  N L   +P  +   L +L +LD+S NK+               L    F   
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKI-------------VILLDYMFQ-- 125

Query: 339 KFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLL 398
                      +L +L+ L +G  +       +   L  L  L L +     T      L
Sbjct: 126 -----------DLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEAL 172

Query: 399 VSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLS 458
             L  L VL L    ++ +                             K  + L +L++S
Sbjct: 173 SHLHGLIVLRLRHLNINAIR------------------------DYSFKRLYRLKVLEIS 208

Query: 459 SNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
                  +    L     NL++L+++H  LT              +L  L+LS N +   
Sbjct: 209 HWPYLDTMTPNCLYGL--NLTSLSITHCNLTAVPYLA---VRHLVYLRFLNLSYNPIS-- 261

Query: 519 LPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD--KLS 576
                       +  +            L  L+ + L    L+ + P    +F     L 
Sbjct: 262 -----------TIEGSMLHE--------LLRLQEIQLVGGQLAVVEP---YAFRGLNYLR 299

Query: 577 ILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQ 610
           +L++   N   T+  + F     L  + L  N   
Sbjct: 300 VLNVS-GNQLTTLEESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (274), Expect = 3e-25
 Identities = 69/326 (21%), Positives = 118/326 (36%), Gaps = 58/326 (17%)

Query: 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS 426
            +P  +   T+   LDL +N  +   + +F   S  +LE L L+ N +S +         
Sbjct: 25  AVPEGIPTETR--LLDLGKNRIKTLNQDEF--ASFPHLEELELNENIVSAVE-------- 72

Query: 427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                           P    N  +L  L L SNR+   IP  +      NL+ L++S N
Sbjct: 73  ----------------PGAFNNLFNLRTLGLRSNRLK-LIPLGVFT-GLSNLTKLDISEN 114

Query: 487 LLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCK 546
            +      +         L +L++  N+L               +S+ +F G        
Sbjct: 115 KIVILLDYMFQ---DLYNLKSLEVGDNDLV-------------YISHRAFSG-------- 150

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
           L+SLE L L   NL+ +    L      L +L LR  N       +F +  RL ++++SH
Sbjct: 151 LNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISH 209

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
             +   +  + +    L  L I    +  +    +  L  L  L L  N    I  E  +
Sbjct: 210 WPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTI--EGSM 267

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSF 692
                +L+ I L   +    +   +F
Sbjct: 268 LHELLRLQEIQLVGGQLA-VVEPYAF 292

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  109 bits (273), Expect = 4e-25
 Identities = 67/432 (15%), Positives = 125/432 (28%), Gaps = 118/432 (27%)

Query: 257 LHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
             +       +  +P  I      + LDL  N +         +   LEEL+L+ N +S 
Sbjct: 14  RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVS- 69

Query: 317 EFPWSIVIGNF---TQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSL 372
               ++  G F     L++L   SN+    +   +   L +L  L I        +    
Sbjct: 70  ----AVEPGAFNNLFNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMF 124

Query: 373 RNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVV 432
           ++L  L +L++  N         F    L +LE L+L    L+ +               
Sbjct: 125 QDLYNLKSLEVGDNDLVYISHRAF--SGLNSLEQLTLEKCNLTSIP-------------- 168

Query: 433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
                        L + H L++L L    I+  I  +      +                
Sbjct: 169 ----------TEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYR---------------- 201

Query: 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEI 552
                       L  L++S                        ++  +        +L  
Sbjct: 202 ------------LKVLEISHWP---------------------YLDTMTPNCLYGLNLTS 228

Query: 553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQG 611
           L ++H NL+                           +P         L  ++LS+N    
Sbjct: 229 LSITHCNLT--------------------------AVPYLAVRHLVYLRFLNLSYNPIST 262

Query: 612 RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671
                L    +L+ + +   Q+  + P     L  L VL +  N+   +  E  +     
Sbjct: 263 IEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL--EESVFHSVG 320

Query: 672 KLRIIDLSNNRF 683
            L  + L +N  
Sbjct: 321 NLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 70/359 (19%), Positives = 112/359 (31%), Gaps = 61/359 (16%)

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
              LLDL  NRI   +          +L  L L+ N+++  +            L TL L
Sbjct: 33  ETRLLDLGKNRIK-TLNQDEFASFP-HLEELELNENIVSAVEPGAFN---NLFNLRTLGL 87

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
            SN L+             L+    F G        L +L  L +S N +  LL      
Sbjct: 88  RSNRLK-------------LIPLGVFTG--------LSNLTKLDISENKIVILLDYMFQD 126

Query: 571 FSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629
               L  L++  +N    I    F   + L  + L           +L +   L  L + 
Sbjct: 127 LY-NLKSLEV-GDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689
              I  I       L  L VL +    +  +            L  + +++   T  +P 
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPY--LDTMTPNCLYGLNLTSLSITHCNLT-AVPY 241

Query: 690 KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD-KVPDI 748
            +          +   L++L                    +L  N    I          
Sbjct: 242 LAV--------RHLVYLRFL--------------------NLSYNPISTIEGSMLHELLR 273

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
           L  I L   +   + P +   L  L+VLN+  N L     S   ++ NLE+L L +N  
Sbjct: 274 LQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 87.5 bits (217), Expect = 4e-18
 Identities = 47/244 (19%), Positives = 89/244 (36%), Gaps = 35/244 (14%)

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
           +   ++DL  N  +        +   LE L++ +N +  + P     L NL  L L+SN+
Sbjct: 32  TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91

Query: 657 FYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPK 716
              I     +  G S L  +D+S N+    L    F         +  +LK L+      
Sbjct: 92  LKLI--PLGVFTGLSNLTKLDISENKIV-ILLDYMF--------QDLYNLKSLE------ 134

Query: 717 EWLLSDEVATYDYSLKMNNKGQIM--TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774
                         +  N+   I    +  +   L  + L       +   ++++L GL 
Sbjct: 135 --------------VGDNDLVYISHRAFSGLNS-LEQLTLEKCNLTSIPTEALSHLHGLI 179

Query: 775 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP 834
           VL L + N+          L  L+ L++S+  +L  +    +    L   +++   LT  
Sbjct: 180 VLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTA- 238

Query: 835 IPQG 838
           +P  
Sbjct: 239 VPYL 242

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 73.6 bits (181), Expect = 9e-14
 Identities = 50/216 (23%), Positives = 84/216 (38%), Gaps = 35/216 (16%)

Query: 126 LVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDL 183
           L +L+ L +  ND     I       L+ L  L L   +    IP+E L  L  L+ L L
Sbjct: 127 LYNLKSLEVGDNDL--VYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRL 183

Query: 184 SLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ 243
              +   +           ++L  L+ L++ +     T+  N     +LT LS+  C L 
Sbjct: 184 RHLNINAIR------DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT 237

Query: 244 GRIQSSLGNLSKLLHLDLSLNEL----------LGEL--------------PVSIGNLHS 279
                ++ +L  L  L+LS N +          L  L              P +   L+ 
Sbjct: 238 AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNY 297

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315
           L+ L++S N L+    +   ++ +LE L L  N L+
Sbjct: 298 LRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  114 bits (288), Expect = 1e-26
 Identities = 67/373 (17%), Positives = 125/373 (33%), Gaps = 64/373 (17%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
            +    L++G   + + +P  L   + +T L +    L   + +    L     L++S N
Sbjct: 39  NNGNAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLT-SLPALPPELR---TLEVSGN 91

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLV--------------SLEELDLS 310
           +L   LPV    L  L      + +L   LP+ +  L                L+EL +S
Sbjct: 92  QL-TSLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLTSLPVLPPGLQELSVS 149

Query: 311 FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS 370
            N+L+   P        ++L  L   +N+ +  L      L+ L V      N    +P+
Sbjct: 150 DNQLA-SLP-----ALPSELCKLWAYNNQLT-SLPMLPSGLQELSV----SDNQLASLPT 198

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFT 430
               L +L   +           L  L      L+ L +S N L+ L  + S        
Sbjct: 199 LPSELYKLWAYNNR---------LTSLPALPSGLKELIVSGNRLTSLPVLPSE-----LK 244

Query: 431 VVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG 490
            + +    L   P        L+ L +  N++  ++P  L+  S  + + +NL  N L+ 
Sbjct: 245 ELMVSGNRLTSLPMLPSG---LLSLSVYRNQLT-RLPESLIHLS--SETTVNLEGNPLSE 298

Query: 491 FDQQLVVLPGGKRFLLTLDLSSNNL----QGPLPVPPSRTVNYLVSNNSFIGEIPSWLCK 546
              Q +      R + +    S  +          P      +L + +  +         
Sbjct: 299 RTLQAL------REITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAP 352

Query: 547 LDSLEILVLSHNN 559
            D   +     N 
Sbjct: 353 ADRWHMFGQEDNA 365

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  109 bits (273), Expect = 1e-24
 Identities = 69/359 (19%), Positives = 109/359 (30%), Gaps = 75/359 (20%)

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362
               L++  + L+   P  +       + +L    N  +  L A    LR+LEV      
Sbjct: 41  GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLT-SLPALPPELRTLEV----SG 90

Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTS 422
           N    +P     L +L                  L      L  L +  N          
Sbjct: 91  NQLTSLPVLPPGLLELSIFSNPLTH---------LPALPSGLCKLWIFGN---------- 131

Query: 423 NTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALN 482
                           L   P        L  L +S N++   +P+         L  L 
Sbjct: 132 ---------------QLTSLPVLPPG---LQELSVSDNQL-ASLPALP-----SELCKLW 167

Query: 483 LSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS 542
             +N       QL  LP     L  L +S N L   LP  PS        NN     +P+
Sbjct: 168 AYNN-------QLTSLPMLPSGLQELSVSDNQLAS-LPTLPSELYKLWAYNNRLT-SLPA 218

Query: 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMI 602
                  L+ L++S N L+ L P         L  L +   N   ++P      S L  +
Sbjct: 219 LPS---GLKELIVSGNRLTSL-PVLPSE----LKELMVS-GNRLTSLPMLP---SGLLSL 266

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
            +  N    R+P SLI+ S    +++  N + +     L  + +         +F    
Sbjct: 267 SVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAG 324

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  108 bits (271), Expect = 2e-24
 Identities = 60/286 (20%), Positives = 104/286 (36%), Gaps = 54/286 (18%)

Query: 102 HVMKLDLSNSCLYGSINSSSSL-FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLS 160
           H+  L + +       N+ +SL      L  L ++ N   S  +P     L  LS  +  
Sbjct: 62  HITTLVIPD-------NNLTSLPALPPELRTLEVSGNQLTS--LPVLPPGLLELSIFSNP 112

Query: 161 HSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS 220
            +     +P+       L  L +  N             +L      L+ L +    + +
Sbjct: 113 LT----HLPA---LPSGLCKLWIFGN----------QLTSLPVLPPGLQELSVSDNQL-A 154

Query: 221 TIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL 280
           ++P   + L  L   +        ++ S     S L  L +S N+ L  LP     L+ L
Sbjct: 155 SLPALPSELCKLWAYNN-------QLTSLPMLPSGLQELSVSDNQ-LASLPTLPSELYKL 206

Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
              +  +      LP        L+EL +S N+L+   P        ++L+ L  + N+ 
Sbjct: 207 WAYNNRLT----SLPALPSG---LKELIVSGNRLT-SLPVLP-----SELKELMVSGNRL 253

Query: 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
           +  L      L SL V      N   R+P SL +L+   T++L  N
Sbjct: 254 T-SLPMLPSGLLSLSV----YRNQLTRLPESLIHLSSETTVNLEGN 294

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 98.8 bits (246), Expect = 2e-21
 Identities = 78/424 (18%), Positives = 139/424 (32%), Gaps = 78/424 (18%)

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
              +L++  + +   +P  L      +++ L +  N        L  LP     L TL++
Sbjct: 41  GNAVLNVGESGLT-TLPDCLP----AHITTLVIPDN-------NLTSLPALPPELRTLEV 88

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
           S N L   LPV P   +   + +N     +P+       L  L +  N L+ L P     
Sbjct: 89  SGNQLTS-LPVLPPGLLELSIFSNPLT-HLPALP---SGLCKLWIFGNQLTSL-PVLPPG 142

Query: 571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD 630
               L  L +  +N   ++P    +  +L      +N     +P      S L+ L + D
Sbjct: 143 ----LQELSVS-DNQLASLPALPSELCKL---WAYNNQLT-SLPMLP---SGLQELSVSD 190

Query: 631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK 690
           NQ+  +          L  L   +N+   +   P      S L+ + +S NR T  LP  
Sbjct: 191 NQLASLPTL----PSELYKLWAYNNRLTSLPALP------SGLKELIVSGNRLTS-LPV- 238

Query: 691 SFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILT 750
                        S+LK L                     +  N   ++ +   +P  L 
Sbjct: 239 -----------LPSELKEL--------------------MVSGN---RLTSLPMLPSGLL 264

Query: 751 SIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ 810
           S+ +  N+    +P S+ +L     +NL+ N L       L  +T+          F   
Sbjct: 265 SLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMA 323

Query: 811 IPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAP 870
                 E   L     +D  +     +      +     E N+      L R  E++   
Sbjct: 324 GASAPRETRALHLAA-ADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRLSETENFI 382

Query: 871 TNED 874
            +  
Sbjct: 383 KDAG 386

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 81.9 bits (202), Expect = 4e-16
 Identities = 58/284 (20%), Positives = 99/284 (34%), Gaps = 48/284 (16%)

Query: 401 LKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSN 460
                VL++  + L+ L     +      T + +   NL   P        L  L++S N
Sbjct: 39  NNGNAVLNVGESGLTTL----PDCLPAHITTLVIPDNNLTSLPALPPE---LRTLEVSGN 91

Query: 461 RIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP 520
           ++   +P     P    LS  +            L  LP G   L  L +  N L   LP
Sbjct: 92  QLT-SLPVLP--PGLLELSIFSNPLT-------HLPALPSG---LCKLWIFGNQLTS-LP 137

Query: 521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDL 580
           V P       VS+N  +  +P+   +L  L      +N L+ L P         L  L +
Sbjct: 138 VLPPGLQELSVSDNQ-LASLPALPSELCKLW---AYNNQLTSL-PMLPSG----LQELSV 188

Query: 581 RANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSW 640
            ++N   ++P      S L  +   +N     +P      S L+ L +  N++  +    
Sbjct: 189 -SDNQLASLPTLP---SELYKLWAYNNRLT-SLPALP---SGLKELIVSGNRLTSLPVL- 239

Query: 641 LGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
                 L  L++  N+   +   P      S L  + +  N+ T
Sbjct: 240 ---PSELKELMVSGNRLTSLPMLP------SGLLSLSVYRNQLT 274

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 79.9 bits (197), Expect = 1e-15
 Identities = 54/288 (18%), Positives = 96/288 (33%), Gaps = 70/288 (24%)

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDL 604
           C  +   +L +  + L+ L P CL +    ++ L +  +N   ++P        L  +++
Sbjct: 37  CLNNGNAVLNVGESGLTTL-PDCLPA---HITTLVIP-DNNLTSLPALP---PELRTLEV 88

Query: 605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
           S N     +P       +L         +  +          L  L +  N+        
Sbjct: 89  SGNQLT-SLPVLPPGLLELSIFSNPLTHLPAL-------PSGLCKLWIFGNQL------T 134

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
            +      L+ + +S+N+    LP+              S+L  L        W      
Sbjct: 135 SLPVLPPGLQELSVSDNQLA-SLPA------------LPSELCKL--------WAY---- 169

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
                    NN  Q+ +   +P  L  + +S N+    +PT  + L  L   N    +L 
Sbjct: 170 ---------NN--QLTSLPMLPSGLQELSVSDNQL-ASLPTLPSELYKLWAYNNRLTSLP 217

Query: 785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
                     + L+ L +S N  L  +P    EL  L    VS N LT
Sbjct: 218 ALP-------SGLKELIVSGNR-LTSLPVLPSELKEL---MVSGNRLT 254

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 73.0 bits (179), Expect = 2e-13
 Identities = 48/256 (18%), Positives = 82/256 (32%), Gaps = 37/256 (14%)

Query: 101 GHVMKLDLSNSCLYGSINSSSSLFKLV-HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNL 159
             + +L +S+       N  +SL  L   L  L    N    + +P     L  L   ++
Sbjct: 141 PGLQELSVSD-------NQLASLPALPSELCKLWAYNNQL--TSLPMLPSGLQEL---SV 188

Query: 160 SHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIR 219
           S +     +P+   EL  L + +  L S             L    S L+ L +    + 
Sbjct: 189 SDNQL-ASLPTLPSELYKLWAYNNRLTS-------------LPALPSGLKELIVSGNRLT 234

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
           S +P      S L  L +    L   +      L     L +  N+L   LP S+ +L S
Sbjct: 235 S-LP---VLPSELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQL-TRLPESLIHLSS 285

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
              ++L  N LS     +++ + S         +       +        L + D+    
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345

Query: 340 FSGELHASIGNLRSLE 355
             GE  A         
Sbjct: 346 REGEP-APADRWHMFG 360

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 44.5 bits (105), Expect = 2e-04
 Identities = 18/84 (21%), Positives = 27/84 (32%), Gaps = 20/84 (23%)

Query: 767 IANLKGLQVLNLDNNNLQGHIPSCLGN------------------LTNLESLDLSNNNFL 808
                G  VLN+  + L   +P CL                       L +L++S N  L
Sbjct: 36  ACLNNGNAVLNVGESGLT-TLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQ-L 93

Query: 809 GQIPQQLVELTFLEFFNVSDNYLT 832
             +P     L  L  F+    +L 
Sbjct: 94  TSLPVLPPGLLELSIFSNPLTHLP 117

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  113 bits (284), Expect = 1e-26
 Identities = 82/403 (20%), Positives = 152/403 (37%), Gaps = 50/403 (12%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
            +  +DLS+N+++    TS   L  L+ L +           +      + L  L    N
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIR-NNTFRGLSSLIILKLDYN 89

Query: 339 KFSGELHASI-GNLRSLEVLAIGRCNFSGRI--PSSLRNLTQLITLDLSQNSYRGTMELD 395
           +F  +L       L +LEVL + +CN  G +   +  + LT L  L L  N+ +  ++  
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIK-KIQPA 147

Query: 396 FLLVSLKNLEVLSLSSN-WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNF--------- 445
              ++++   VL L+ N   S+  +   N   + FT++ L S  L +   +         
Sbjct: 148 SFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 446 LKNQHHLMLLDLSSNRIHGKIPSW---LLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
                 +  LDLS N     +       +  +      L+ S+N+ + F       P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 503 RF-------LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVL 555
            F       + T DLS + +               +  + F             LE L L
Sbjct: 268 TFKGLEASGVKTCDLSKSKIFA-------------LLKSVFSH--------FTDLEQLTL 306

Query: 556 SHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIP 614
           + N ++ +        +  L  L+L   NF G+I    F    +L ++DLS+N  +    
Sbjct: 307 AQNEINKIDDNAFWGLT-HLLKLNLS-QNFLGSIDSRMFENLDKLEVLDLSYNHIRALGD 364

Query: 615 RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
           +S +    L+ L +  NQ++ +       L +L  + L +N +
Sbjct: 365 QSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 90.2 bits (224), Expect = 4e-19
 Identities = 86/407 (21%), Positives = 147/407 (36%), Gaps = 54/407 (13%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
           HV  +DLS + +  +  + +S  +L  L++L +           +    LS L  L L +
Sbjct: 31  HVNYVDLSLNSI--AELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDY 88

Query: 162 SSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS 220
           + F  Q+ +     L NL  L L+  +  G  L    F    + L++LE L L   +I+ 
Sbjct: 89  NQF-LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF----KPLTSLEMLVLRDNNIKK 143

Query: 221 TIPHNL-ANLSSLTFLSLHS-----------CGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
             P +   N+     L L                QG+  + L  LS +   D++   L  
Sbjct: 144 IQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL-RLSSITLQDMNEYWLGW 202

Query: 269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFT 328
           E   +     S+  LDLS N     +     + ++  ++       S     S    NF 
Sbjct: 203 EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFK 262

Query: 329 QLQSLDFTSNKFSG--ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
              +  F   + SG      S   + +L               S   + T L  L L+QN
Sbjct: 263 DPDNFTFKGLEASGVKTCDLSKSKIFALL-------------KSVFSHFTDLEQLTLAQN 309

Query: 387 SYRGTMELDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ--KFTVVGLRSCNLI 440
                 E++ +       L +L  L+LS N    L  + S       K  V+ L   ++ 
Sbjct: 310 ------EINKIDDNAFWGLTHLLKLNLSQN---FLGSIDSRMFENLDKLEVLDLSYNHIR 360

Query: 441 EFPN-FLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
              +       +L  L L +N++   +P  + D  T +L  + L  N
Sbjct: 361 ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLT-SLQKIWLHTN 405

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.6 bits (207), Expect = 6e-17
 Identities = 72/394 (18%), Positives = 114/394 (28%), Gaps = 88/394 (22%)

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
                    L  L +        I +      + +L  L L +N       Q + L  G 
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLS-SLIILKLDYN-------QFLQLETG- 97

Query: 503 RF-----LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSH 557
            F     L  L L+  NL G +           +S N F          L SLE+LVL  
Sbjct: 98  AFNGLANLEVLTLTQCNLDGAV-----------LSGNFF--------KPLTSLEMLVLRD 138

Query: 558 NNLSGLLPRCLGSFSDKLSILDLRANNF-------FGTIPNTFMKESRLGMI---DLSHN 607
           NN+  + P        +  +LDL  N                     RL  I   D++  
Sbjct: 139 NNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEY 198

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLI-------------LQS 654
                   +    + +  LD+  N  ++            T +                 
Sbjct: 199 WLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGH 258

Query: 655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVIS 714
             F             S ++  DLS ++    L    F         + +DL+ L     
Sbjct: 259 TNFKDPDNFTFKGLEASGVKTCDLSKSKIF-ALLKSVF--------SHFTDLEQL----- 304

Query: 715 PKEWLLSDEVATYDYSLKMNNKGQI--MTYDKVPDILTSIILSSNRFDGMIPTSIANLKG 772
                          +L  N   +I    +  +   L  + LS N    +      NL  
Sbjct: 305 ---------------TLAQNEINKIDDNAFWGLTH-LLKLNLSQNFLGSIDSRMFENLDK 348

Query: 773 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN 806
           L+VL+L  N+++         L NL+ L L  N 
Sbjct: 349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 83.3 bits (206), Expect = 7e-17
 Identities = 74/371 (19%), Positives = 129/371 (34%), Gaps = 56/371 (15%)

Query: 477 NLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSF 536
           +++ ++LS N +   ++         + L  L +        +             NN+F
Sbjct: 31  HVNYVDLSLNSIAELNETSF---SRLQDLQFLKVEQQTPGLVIR------------NNTF 75

Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI--PNTFM 594
            G        L SL IL L +N    L        +  L +L L   N  G +   N F 
Sbjct: 76  RG--------LSSLIILKLDYNQFLQLETGAFNGLA-NLEVLTLTQCNLDGAVLSGNFFK 126

Query: 595 KESRLGMIDLSHNLFQGRIPRSLI-NCSKLEFLDIGDNQIRDIFPSWLGTLP--NLTVLI 651
             + L M+ L  N  +   P S   N  +   LD+  N+++ I    L      + T+L 
Sbjct: 127 PLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLR 186

Query: 652 LQSNKFYGI--IREPRIDCG----FSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSD 705
           L S     +         CG     + +  +DLS N F   +  + F      KI +   
Sbjct: 187 LSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLIL 246

Query: 706 LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPT 765
                   S       D        L+ +              + +  LS ++   ++ +
Sbjct: 247 SNSYNMGSSFGHTNFKDPDNFTFKGLEASG-------------VKTCDLSKSKIFALLKS 293

Query: 766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP----QQLVELTFL 821
             ++   L+ L L  N +     +    LT+L  L+LS N  LG I     + L +L  L
Sbjct: 294 VFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVL 352

Query: 822 EFFNVSDNYLT 832
              ++S N++ 
Sbjct: 353 ---DLSYNHIR 360

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 42/289 (14%), Positives = 79/289 (27%), Gaps = 46/289 (15%)

Query: 575 LSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI-NCSKLEFLDIGDNQI 633
           ++ +DL  N+       +F +   L  + +        I  +     S L  L +  NQ 
Sbjct: 32  VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQF 91

Query: 634 RDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693
             +       L NL VL L      G +         + L ++ L +N      P+  F 
Sbjct: 92  LQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF- 150

Query: 694 CWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII 753
                  +N      L          L+             NK            + SI 
Sbjct: 151 -------LNMRRFHVLD---------LT------------FNK------------VKSI- 169

Query: 754 LSSNRFDGMIPTSIA--NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQI 811
                             L  + + +++   L           T++ +LDLS N F   +
Sbjct: 170 -CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESM 228

Query: 812 PQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPL 860
            ++  +              +  +        F +    +  GL    +
Sbjct: 229 AKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 6/102 (5%)

Query: 745 VPDI---LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESL 800
           VP++   +  + LS N    +  TS + L+ LQ L ++       I +     L++L  L
Sbjct: 25  VPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL 84

Query: 801 DLSNNNFLGQIP-QQLVELTFLEFFNVSDNYLTGPIPQGRQF 841
            L  N    Q+       L  LE   ++   L G +  G  F
Sbjct: 85  KLDYNQ-FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFF 125

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  110 bits (276), Expect = 2e-26
 Identities = 73/270 (27%), Positives = 99/270 (36%), Gaps = 34/270 (12%)

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNEL--LGELPVSIGNL 277
           +++P  +   SS T L L S  LQ         L++L  L LS N L   G    S    
Sbjct: 20  TSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 278 HSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTS 337
            SLK LDLS N +   + ++   L  LE LD   + L     +S V  +   L  LD + 
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDISH 135

Query: 338 NKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLSQNSYRGTMELDF 396
                  +     L SLEVL +   +F           L  L  LDLSQ          F
Sbjct: 136 THTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAF 195

Query: 397 LLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
              SL +L+VL++S N    L                             K  + L +LD
Sbjct: 196 --NSLSSLQVLNMSHNNFFSLD------------------------TFPYKCLNSLQVLD 229

Query: 457 LSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
            S N I        L     +L+ LNL+ N
Sbjct: 230 YSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  103 bits (260), Expect = 2e-24
 Identities = 64/264 (24%), Positives = 100/264 (37%), Gaps = 20/264 (7%)

Query: 89  CSWDGVECSENT---------GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDF 139
           CS   + C+                +L+L ++ L           KL  L  L+L+ N  
Sbjct: 7   CSGTEIRCNSKGLTSVPTGIPSSATRLELESNKL--QSLPHGVFDKLTQLTKLSLSSNGL 64

Query: 140 KSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF 198
                 S+     + L YL+LS +     + S  L L  L  LD   ++     L++ + 
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNG-VITMSSNFLGLEQLEHLDFQHSN-----LKQMSE 118

Query: 199 ANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQS-SLGNLSKLL 257
            ++   L NL  LD+ +   R         LSSL  L +     Q          L  L 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
            LDLS  +L    P +  +L SL+ L++S NN         + L SL+ LD S N +   
Sbjct: 179 FLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-T 237

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFS 341
                +    + L  L+ T N F+
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.6 bits (241), Expect = 5e-22
 Identities = 70/307 (22%), Positives = 105/307 (34%), Gaps = 63/307 (20%)

Query: 507 TLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSW-LCKLDSLEILVLSHNNLSGLL 564
            +  +S  L   P  +P S T   L SN   +  +P     KL  L  L LS N LS   
Sbjct: 11  EIRCNSKGLTSVPTGIPSSATRLELESNK--LQSLPHGVFDKLTQLTKLSLSSNGLS-FK 67

Query: 565 PRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL-INCS 621
             C  S      L  LDL  N    T+ + F+   +L  +D  H+  +     S+ ++  
Sbjct: 68  GCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 126

Query: 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
            L +LDI     R  F      L +L VL +  N F      P I      L  +DLS  
Sbjct: 127 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENF-LPDIFTELRNLTFLDLSQC 185

Query: 682 RFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMT 741
           +   +L   +F         + S L+ L                                
Sbjct: 186 QLE-QLSPTAF--------NSLSSLQVL-------------------------------- 204

Query: 742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNL-TNLESL 800
                       +S N F  +       L  LQVL+   N++       L +  ++L  L
Sbjct: 205 -----------NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFL 253

Query: 801 DLSNNNF 807
           +L+ N+F
Sbjct: 254 NLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 96.2 bits (240), Expect = 8e-22
 Identities = 63/275 (22%), Positives = 100/275 (36%), Gaps = 40/275 (14%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFAN 200
           + +P+ I   S  + L L  +     +P  + + L  L  L LS N          +   
Sbjct: 20  TSVPTGI--PSSATRLELESNKL-QSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 201 LVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL-GNLSKLLHL 259
                ++L+ LDL +  + + +  N   L  L  L      L+   + S+  +L  L++L
Sbjct: 77  ----TTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYL 131

Query: 260 DLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGE 317
           D+S           I   L SL+ L ++ N+        I   L +L  LDLS  +L   
Sbjct: 132 DISHTH-TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL--- 187

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ 377
                      QL    F              +L SL+VL +   NF        + L  
Sbjct: 188 ----------EQLSPTAFN-------------SLSSLQVLNMSHNNFFSLDTFPYKCLNS 224

Query: 378 LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           L  LD S N    T +   L     +L  L+L+ N
Sbjct: 225 LQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 92.8 bits (231), Expect = 1e-20
 Identities = 63/319 (19%), Positives = 98/319 (30%), Gaps = 77/319 (24%)

Query: 267 LGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN 326
           L  +P  I    S  +L+L  N L          L  L +L LS N LS +   S     
Sbjct: 19  LTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFG 76

Query: 327 FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
            T L+ LD + N                             + S+   L QL  LD   +
Sbjct: 77  TTSLKYLDLSFNGVI-------------------------TMSSNFLGLEQLEHLDFQHS 111

Query: 387 SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFL 446
           + +   E    L SL+NL  L +S     +                              
Sbjct: 112 NLKQMSEFSVFL-SLRNLIYLDISHTHTRVAF------------------------NGIF 146

Query: 447 KNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL 506
                L +L ++ N         +     +NL+ L+LS   L                L 
Sbjct: 147 NGLSSLEVLKMAGNSFQENFLPDIFT-ELRNLTFLDLSQCQLEQLSPT--AFNSLSS-LQ 202

Query: 507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR 566
            L++S NN                +    +          L+SL++L  S N++     +
Sbjct: 203 VLNMSHNNFFS-------------LDTFPYKC--------LNSLQVLDYSLNHIMTSKKQ 241

Query: 567 CLGSFSDKLSILDLRANNF 585
            L  F   L+ L+L  N+F
Sbjct: 242 ELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 90.5 bits (225), Expect = 6e-20
 Identities = 58/267 (21%), Positives = 94/267 (35%), Gaps = 37/267 (13%)

Query: 430 TVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLL 488
           T +   S  L   P     +      L+L SN++   +P  + D  T  L+ L+LS N L
Sbjct: 10  TEIRCNSKGLTSVPTGIPSS---ATRLELESNKLQ-SLPHGVFDKLT-QLTKLSLSSNGL 64

Query: 489 TGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLD 548
           +          G    L  LDLS N +                        + S    L+
Sbjct: 65  SFKGCCSQSDFGTTS-LKYLDLSFNGVI----------------------TMSSNFLGLE 101

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
            LE L   H+NL  +       F     L  LD+   +        F   S L ++ ++ 
Sbjct: 102 QLEHLDFQHSNLKQMSEF--SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 607 NLFQGRIPR-SLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665
           N FQ             L FLD+   Q+  + P+   +L +L VL +  N F+ +  +  
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSL--DTF 217

Query: 666 IDCGFSKLRIIDLSNNRFTGKLPSKSF 692
                + L+++D S N        +  
Sbjct: 218 PYKCLNSLQVLDYSLNHIM-TSKKQEL 243

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 82.4 bits (204), Expect = 3e-17
 Identities = 68/356 (19%), Positives = 105/356 (29%), Gaps = 104/356 (29%)

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362
           S  E+  +   L+   P  I     +    L+  SNK           L+SL        
Sbjct: 8   SGTEIRCNSKGLT-SVPTGI----PSSATRLELESNK-----------LQSLP------- 44

Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTS 422
                       LTQL  L LS N                +L+ L LS N +  ++    
Sbjct: 45  ------HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFL 98

Query: 423 NTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALN 482
                                        L  LD   + +             + +S  +
Sbjct: 99  GLEQ-------------------------LEHLDFQHSNL-------------KQMSEFS 120

Query: 483 LSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS 542
           +  +L               R L+ LD+S  + +             +  N  F G    
Sbjct: 121 VFLSL---------------RNLIYLDISHTHTR-------------VAFNGIFNG---- 148

Query: 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMI 602
               L SLE+L ++ N+        + +    L+ LDL         P  F   S L ++
Sbjct: 149 ----LSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVL 204

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP-NLTVLILQSNKF 657
           ++SHN F           + L+ LD   N I       L   P +L  L L  N F
Sbjct: 205 NMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 61/298 (20%), Positives = 105/298 (35%), Gaps = 67/298 (22%)

Query: 539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN--FFGTIPNTFMKE 596
            +P+ +    S   L L  N L  L        + +L+ L L +N   F G    +    
Sbjct: 21  SVPTGI--PSSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGT 77

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSN 655
           + L  +DLS N     +  + +   +LE LD   + ++ +   S   +L NL  L +   
Sbjct: 78  TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT 136

Query: 656 KFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISP 715
                                   N  F G L S                L+ L      
Sbjct: 137 ------------------HTRVAFNGIFNG-LSS----------------LEVL------ 155

Query: 716 KEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDI--LTSIILSSNRFDGMIPTSIANLKGL 773
                          +  N+  +    D   ++  LT + LS  + + + PT+  +L  L
Sbjct: 156 --------------KMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201

Query: 774 QVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVE--LTFLEFFNVSDN 829
           QVLN+ +NN           L +L+ LD S N+ +    +Q ++   + L F N++ N
Sbjct: 202 QVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNH-IMTSKKQELQHFPSSLAFLNLTQN 258

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 67.3 bits (165), Expect = 3e-12
 Identities = 46/215 (21%), Positives = 75/215 (34%), Gaps = 37/215 (17%)

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
              L++  N+++ +       L  LT L L SN         + D G + L+ +DLS N 
Sbjct: 30  ATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNG 89

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
               + S +FL            L++L                        ++  + M+ 
Sbjct: 90  VI-TMSS-NFL--------GLEQLEHLD---------FQ------------HSNLKQMSE 118

Query: 743 DKVPDILTSII---LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLE 798
             V   L ++I   +S              L  L+VL +  N+ Q +        L NL 
Sbjct: 119 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 178

Query: 799 SLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
            LDLS    L Q+       L+ L+  N+S N   
Sbjct: 179 FLDLSQCQ-LEQLSPTAFNSLSSLQVLNMSHNNFF 212

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 55.4 bits (134), Expect = 3e-08
 Identities = 39/195 (20%), Positives = 70/195 (35%), Gaps = 35/195 (17%)

Query: 642 GTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK-LPSKSFLCWNAMKI 700
           G   + T L L+SNK   +     +    ++L  + LS+N  + K   S+S         
Sbjct: 25  GIPSSATRLELESNKLQSL--PHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDF------- 75

Query: 701 VNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI-MTYDKVPDILTSIILSSNRF 759
             T+ LKYL                     L  N    +   +  +   L  +    +  
Sbjct: 76  -GTTSLKYL--------------------DLSFNGVITMSSNFLGLEQ-LEHLDFQHSNL 113

Query: 760 DGMIPTSI-ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVE 817
             M   S+  +L+ L  L++ + + +         L++LE L ++ N+F          E
Sbjct: 114 KQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 173

Query: 818 LTFLEFFNVSDNYLT 832
           L  L F ++S   L 
Sbjct: 174 LRNLTFLDLSQCQLE 188

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 45.4 bits (108), Expect = 4e-05
 Identities = 25/85 (29%), Positives = 35/85 (41%), Gaps = 5/85 (5%)

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN--F 807
           T I  +S      +PT I        L L++N LQ         LT L  L LS+N   F
Sbjct: 10  TEIRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSF 66

Query: 808 LGQIPQQLVELTFLEFFNVSDNYLT 832
            G   Q     T L++ ++S N + 
Sbjct: 67  KGCCSQSDFGTTSLKYLDLSFNGVI 91

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  112 bits (282), Expect = 6e-26
 Identities = 84/470 (17%), Positives = 166/470 (35%), Gaps = 30/470 (6%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
              + L L   SI      +++ LS L  L L    ++            L +LD+S N 
Sbjct: 52  PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNR 111

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTS--IQNLVSLEELDLSFNKL-SGEFPWSI 322
           L     +S   + SL+ LDLS N+    LP      NL  L  L LS  K    +     
Sbjct: 112 LQN---ISCCPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVA 167

Query: 323 VIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382
            +     L  L     K        I N   L ++      FS ++  S+  L  L   +
Sbjct: 168 HLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSN 227

Query: 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSL----LTKVTSNTTSQKFTVVGLRSCN 438
           +  N       + FL    +   +L+++   +        K+      +    + + +  
Sbjct: 228 IKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLT 287

Query: 439 LIEFPNFLKNQHH------LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
           + E  +  +  +       LM+  + +          L       ++   LS +      
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFL-FSKEALYS-VFAEMNIKMLSISDTPFI- 344

Query: 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN---YLVSNNSF--IGEIPSWLCKL 547
              +V P        L+ + N     +    S        ++  N      ++      +
Sbjct: 345 --HMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM 402

Query: 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607
            SLE L +S N+L+        ++++ + +L+L +N   G++        ++ ++DL +N
Sbjct: 403 SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNN 460

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
                IP+ + +   L+ L++  NQ++ +       L +L  + L  N +
Sbjct: 461 RIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  111 bits (280), Expect = 9e-26
 Identities = 105/544 (19%), Positives = 179/544 (32%), Gaps = 102/544 (18%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDF 335
             K L LS N++S      I  L  L  L LS N++      S+    F     L+ LD 
Sbjct: 53  RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDV 107

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
           + N+           L+++                S   +  L  LDLS N +   + + 
Sbjct: 108 SHNR-----------LQNI----------------SCCPMASLRHLDLSFNDFD-VLPVC 139

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLL 455
               +L  L  L LS+     L                       +           +LL
Sbjct: 140 KEFGNLTKLTFLGLSAAKFRQL-----------------------DLLPVAHLHLSCILL 176

Query: 456 DLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNL 515
           DL S  I G     L  P+T  L  L    N L      + V   G   L  + L+  N 
Sbjct: 177 DLVSYHIKGGETESLQIPNTTVLH-LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENC 235

Query: 516 QGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLD--------SLEILVLSHNNLSGLLPRC 567
           Q  +      T    + N +      +W C +          +E L + +  ++  + R 
Sbjct: 236 QRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDRE 295

Query: 568 LGSFSD----KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
             ++S+     L I  ++   F  +    +   + + +  LS +           + S  
Sbjct: 296 EFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSF 355

Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
            FL+   N   D       TL  L  LILQ N      +   +    S L  +D+S N  
Sbjct: 356 TFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSL 415

Query: 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD 743
                 ++     ++ ++N S                             +N      + 
Sbjct: 416 NSHAYDRTCAWAESILVLNLS-----------------------------SNMLTGSVFR 446

Query: 744 KVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS 803
            +P  +  + L +NR    IP  + +L+ LQ LN+ +N L+         LT+L+ + L 
Sbjct: 447 CLPPKVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLH 505

Query: 804 NNNF 807
           +N +
Sbjct: 506 DNPW 509

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 81.8 bits (202), Expect = 3e-16
 Identities = 79/411 (19%), Positives = 150/411 (36%), Gaps = 41/411 (9%)

Query: 125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIP--SEILELVNLVSLD 182
               LE+L+++ N  ++  I      ++ L +L+LS +  F  +P   E   L  L  L 
Sbjct: 98  FNQDLEYLDVSHNRLQN--ISCC--PMASLRHLDLSFND-FDVLPVCKEFGNLTKLTFLG 152

Query: 183 LSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGL 242
           LS       + ++ +   +     +   LDL    I+     +L    + T L L     
Sbjct: 153 LSAA-----KFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIP-NTTVLHLVFHPN 206

Query: 243 QGRIQSSLGNLSKLLHLDLSLNEL-------LGELPVSIGNLHSLKKLDLSINNLSGELP 295
                    +++ L HL LS  +L       L      +    +L  + L     + +  
Sbjct: 207 SLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCS 266

Query: 296 TSIQNLV---SLEELDLSFNKLSGEFPWSIVIGNFTQLQSL---DFTSNKFSGELHASIG 349
             +        +E L++    ++          + T L+SL      +  F     A   
Sbjct: 267 VKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYS 326

Query: 350 NLRSLEVLAIGRCNFSGRIPSS-LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLS 408
               + +  +   + +  I      + +    L+ +QN +  T  +     +LK L+ L 
Sbjct: 327 VFAEMNIKMLS-ISDTPFIHMVCPPSPSSFTFLNFTQNVF--TDSVFQGCSTLKRLQTLI 383

Query: 409 LSSNWLSLLTKV---TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGK 465
           L  N L    KV   T N +S +   V L S N   +         +++L+LSSN + G 
Sbjct: 384 LQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443

Query: 466 IPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           +   L       +  L+L +N +    + +  L      L  L+++SN L+
Sbjct: 444 VFRCL----PPKVKVLDLHNNRIMSIPKDVTHLQ----ALQELNVASNQLK 486

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 72.2 bits (177), Expect = 3e-13
 Identities = 59/322 (18%), Positives = 116/322 (36%), Gaps = 15/322 (4%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLE-WLNLAFNDFKSSEIPSEIINLSRLSYLNLS 160
           H+  + L     +     + SL         L    N   S ++   +  L  L   N+ 
Sbjct: 170 HLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIK 229

Query: 161 HSSFFGQIPSEILE-------LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDL 213
            +    Q     L        L+N+    +       ++L +  +   VE L N+  L +
Sbjct: 230 LNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYL-NIYNLTI 288

Query: 214 GYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVS 273
                R    ++   L SL    + +       ++     +++    LS+++      V 
Sbjct: 289 TERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVC 348

Query: 274 IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333
             +  S   L+ + N  +  +      L  L+ L L  N L   F  +++  N + L++L
Sbjct: 349 PPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL 408

Query: 334 DFTSNKF-SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTM 392
           D + N   S     +     S+ VL +     +G +   L    ++  LDL  N     M
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PPKVKVLDLHNN---RIM 463

Query: 393 ELDFLLVSLKNLEVLSLSSNWL 414
            +   +  L+ L+ L+++SN L
Sbjct: 464 SIPKDVTHLQALQELNVASNQL 485

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 62.6 bits (152), Expect = 3e-10
 Identities = 54/343 (15%), Positives = 113/343 (32%), Gaps = 25/343 (7%)

Query: 507 TLDLSSNNLQGPLPVPPSRTVN--YLVSNNSFIGEIPSWLC-KLDSLEILVLSHNNLSGL 563
            L LS N++        S       L  +++ I  +   +      LE L +SHN L  +
Sbjct: 56  ALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNI 115

Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNT--FMKESRLGMIDLSHNLFQGRIPRSLINCS 621
               +      L  LDL + N F  +P    F   ++L  + LS   F+ ++    +   
Sbjct: 116 SCCPM----ASLRHLDL-SFNDFDVLPVCKEFGNLTKLTFLGLSAAKFR-QLDLLPVAHL 169

Query: 622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
            L  + + D     I      +L      +L        +   +++   + L  + LSN 
Sbjct: 170 HLSCI-LLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI 228

Query: 682 R-----------FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYS 730
           +           F  +L     L    ++ + T+    ++         +   +  Y+ +
Sbjct: 229 KLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVE-YLNIYNLT 287

Query: 731 LKMNNKGQIMTYDKVPDILTSII-LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS 789
           +      +  TY +       I  + +  F        +    + +  L  ++       
Sbjct: 288 ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMV 347

Query: 790 CLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
           C  + ++   L+ + N F   + Q    L  L+   +  N L 
Sbjct: 348 CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  103 bits (259), Expect = 4e-23
 Identities = 56/365 (15%), Positives = 102/365 (27%), Gaps = 81/365 (22%)

Query: 246 IQSSLGNLSKLLHLDLS--LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVS 303
           I   + N   L        ++    +   +            + N     L   +  +  
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQ 60

Query: 304 LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN 363
             EL L+   LS   P ++      Q+  L+ T N     L     +L  L+       N
Sbjct: 61  FSELQLNRLNLS-SLPDNL----PPQITVLEITQNALI-SLPELPASLEYLDAC----DN 110

Query: 364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSN 423
               +P    +L  L   D+  N      +L  L      LE ++  +N L++L      
Sbjct: 111 RLSTLPELPASLKHL---DVDNN------QLTMLPELPALLEYINADNNQLTML------ 155

Query: 424 TTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNL 483
                              P    +   L +L + +N++   +P        ++L AL++
Sbjct: 156 -------------------PELPTS---LEVLSVRNNQL-TFLPELP-----ESLEALDV 187

Query: 484 SHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSW 543
           S NLL       V     +   +      N +                        IP  
Sbjct: 188 STNLLESLPAVPVRNHHSEETEIFFRCRENRIT----------------------HIPEN 225

Query: 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603
           +  LD    ++L  N LS  +   L   +            +F           R     
Sbjct: 226 ILSLDPTCTIILEDNPLSSRIRESLSQQT--AQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

Query: 604 LSHNL 608
           ++   
Sbjct: 284 VTAWF 288

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 1e-18
 Identities = 61/350 (17%), Positives = 120/350 (34%), Gaps = 41/350 (11%)

Query: 149 INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE--KLS 206
           I L   +  +LS +SF+  I     +  +                 +    +L++   ++
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWD---KWEKQALPGENRNEAVSLLKECLIN 59

Query: 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNEL 266
               L L  +++ S++P NL     +T L +    L   +     +L    +LD   N  
Sbjct: 60  QFSELQLNRLNL-SSLPDNL--PPQITVLEITQNALI-SLPELPASLE---YLDACDNR- 111

Query: 267 LGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN 326
           L  LP    +   LK LD+  N L+  LP        LE ++   N+L+   P       
Sbjct: 112 LSTLPELPAS---LKHLDVDNNQLT-MLPELPAL---LEYINADNNQLT-MLPELP---- 159

Query: 327 FTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQL----ITLD 382
            T L+ L   +N+ +  L     +L +L+V      N    +P+            I   
Sbjct: 160 -TSLEVLSVRNNQLT-FLPELPESLEALDV----STNLLESLPAVPVRNHHSEETEIFFR 213

Query: 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLR---SCNL 439
             +N       +   ++SL     + L  N LS   + + +  + +    G R   S + 
Sbjct: 214 CRENRIT---HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSD 270

Query: 440 IEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
            +     +     +      N+       W      ++ +  +   + L+
Sbjct: 271 GQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLS 320

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 88.9 bits (220), Expect = 2e-18
 Identities = 50/301 (16%), Positives = 102/301 (33%), Gaps = 41/301 (13%)

Query: 125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS 184
            +     L L   +   S +P  +    +++ L ++ ++    +P       +L  LD  
Sbjct: 57  LINQFSELQLNRLNL--SSLPDNL--PPQITVLEITQNA-LISLPELP---ASLEYLDAC 108

Query: 185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG 244
            N            + L E  ++L+ LD+    +   +P      + L +++  +     
Sbjct: 109 DN----------RLSTLPELPASLKHLDVDNNQLTM-LP---ELPALLEYINADNN---- 150

Query: 245 RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSL 304
           ++       + L  L +  N+ L  LP    +   L+ LD+S N L   LP         
Sbjct: 151 QLTMLPELPTSLEVLSVRNNQ-LTFLPELPES---LEALDVSTNLLE-SLPAVPVRNHHS 205

Query: 305 EE----LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
           EE         N+++   P +  I +     ++    N  S  +  S+    +       
Sbjct: 206 EETEIFFRCRENRIT-HIPEN--ILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGP 262

Query: 361 RCNFS---GRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLL 417
           R  FS   G+  +  R L   +T    +N      ++       ++    S   + LS  
Sbjct: 263 RIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDT 322

Query: 418 T 418
            
Sbjct: 323 V 323

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 87.7 bits (217), Expect = 5e-18
 Identities = 58/348 (16%), Positives = 118/348 (33%), Gaps = 80/348 (22%)

Query: 498 LPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSH 557
           LP    F L+ +   N +                       +  S   K +   +   + 
Sbjct: 5   LPINNNFSLSQNSFYNTIS------------------GTYADYFSAWDKWEKQALPGENR 46

Query: 558 NNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL 617
           N    LL  CL    ++ S L L       ++P+      ++ +++++ N     +P   
Sbjct: 47  NEAVSLLKECL---INQFSELQLN-RLNLSSLPDNL--PPQITVLEITQNALI-SLPELP 99

Query: 618 INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
              + LE+LD  DN++  + P       +L  L + +N+   +   P      + L  I+
Sbjct: 100 ---ASLEYLDACDNRLSTL-PE---LPASLKHLDVDNNQLTMLPELP------ALLEYIN 146

Query: 678 LSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKG 737
             NN+ T  LP               + L+ L                    S++ N   
Sbjct: 147 ADNNQLT-MLPEL------------PTSLEVL--------------------SVRNN--- 170

Query: 738 QIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ----VLNLDNNNLQGHIPSCLGN 793
           Q+    ++P+ L ++ +S+N  +  +P         +          N +  HIP  + +
Sbjct: 171 QLTFLPELPESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRIT-HIPENILS 228

Query: 794 LTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQF 841
           L    ++ L +N    +I + L + T    ++    Y +    Q    
Sbjct: 229 LDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTL 276

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 76.5 bits (188), Expect = 2e-14
 Identities = 58/372 (15%), Positives = 106/372 (28%), Gaps = 78/372 (20%)

Query: 470 LLDPSTQNLS-ALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN 528
           ++ P   N S + N  +N ++G                    + N     L        +
Sbjct: 3   IMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFS 62

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT 588
            L  N   +  +P  L     + +L ++ N L  L P    S    L  LD   +N   T
Sbjct: 63  ELQLNRLNLSSLPDNLPP--QITVLEITQNALISL-PELPAS----LEYLDAC-DNRLST 114

Query: 589 IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT 648
           +P        L   D+ +N     +P      + LE+++  +NQ+  +         +L 
Sbjct: 115 LPELPASLKHL---DVDNNQLT-MLPELP---ALLEYINADNNQLTMLPEL----PTSLE 163

Query: 649 VLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY 708
           VL +++N+   +   P        L  +D+S N     LP+      ++ +       + 
Sbjct: 164 VLSVRNNQLTFLPELP------ESLEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCR- 215

Query: 709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIA 768
                                     N+            +T I           P +I 
Sbjct: 216 -------------------------ENR------------ITHI-----------PENIL 227

Query: 769 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD 828
           +L     + L++N L   I   L   T           F     QQ          +   
Sbjct: 228 SLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVT 285

Query: 829 NYLTGPIPQGRQ 840
            +          
Sbjct: 286 AWFPENKQSDVS 297

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 96.6 bits (241), Expect = 8e-22
 Identities = 69/339 (20%), Positives = 120/339 (35%), Gaps = 55/339 (16%)

Query: 89  CSWDGVECSEN---------TGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDF 139
           C    V+CS+                LDL N+ +  +         L +L  L L  N  
Sbjct: 31  CHLRVVQCSDLGLEKVPKDLPPDTALLDLQNNKI--TEIKDGDFKNLKNLHTLILINN-- 86

Query: 140 KSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF 198
           K S+I       L +L  L LS +    ++P ++ +   L  L +  N     +++K  F
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQL-KELPEKMPK--TLQELRVHENEIT--KVRKSVF 141

Query: 199 ANLVEKLSNLETLDLGYVSIRST-IPHN-LANLSSLTFLSLHSCGLQGRIQSSLGNLSKL 256
             L    + +  ++LG   ++S+ I +     +  L+++ +    +   I   L     L
Sbjct: 142 NGL----NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSL 194

Query: 257 LHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS- 315
             L L  N++      S+  L++L KL LS N++S     S+ N   L EL L+ NKL  
Sbjct: 195 TELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK 254

Query: 316 --GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR 373
             G         +   +Q +   +N  S                AIG  +F    P    
Sbjct: 255 VPGGLA------DHKYIQVVYLHNNNIS----------------AIGSNDFCP--PGYNT 290

Query: 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
                  + L  N  +           +     + L + 
Sbjct: 291 KKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 95.1 bits (237), Expect = 3e-21
 Identities = 64/387 (16%), Positives = 121/387 (31%), Gaps = 95/387 (24%)

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362
            L  +  S   L  + P  +          LD  +NK +        NL++L  L +   
Sbjct: 32  HLRVVQCSDLGLE-KVPKDL----PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 86

Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTS 422
             S   P +   L +L  L LS+N  +   EL   +   K L+ L +  N ++ +     
Sbjct: 87  KISKISPGAFAPLVKLERLYLSKNQLK---ELPEKM--PKTLQELRVHENEITKVR---- 137

Query: 423 NTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH-GKIPSWLLDPSTQNLSAL 481
                                +     + +++++L +N +    I +         LS +
Sbjct: 138 --------------------KSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK-KLSYI 176

Query: 482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIP 541
            ++   +T   Q L   P     L  L L  N +               V   S  G   
Sbjct: 177 RIADTNITTIPQGL--PPS----LTELHLDGNKITK-------------VDAASLKG--- 214

Query: 542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGM 601
                L++L  L LS N++S +                            +      L  
Sbjct: 215 -----LNNLAKLGLSFNSISAVDN-------------------------GSLANTPHLRE 244

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI------FPSWLGTLPNLTVLILQSN 655
           + L++N    ++P  L +   ++ + + +N I  I       P +     + + + L SN
Sbjct: 245 LHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSN 303

Query: 656 KFYGIIREPRIDCGFSKLRIIDLSNNR 682
                  +P           + L N +
Sbjct: 304 PVQYWEIQPSTFRCVYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.1 bits (206), Expect = 3e-17
 Identities = 53/285 (18%), Positives = 102/285 (35%), Gaps = 41/285 (14%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            L ++  S   L  + P+         ++LDL+ N         F     L  + L +N 
Sbjct: 32  HLRVVQCSDLGLEKV-PK---DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNK 87

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
                P +     KLE L +  NQ++++ P        L  L +  N+   +     +  
Sbjct: 88  ISKISPGAFAPLVKLERLYLSKNQLKEL-PE--KMPKTLQELRVHENEITKV--RKSVFN 142

Query: 669 GFSKLRIIDLSNNRFT-GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
           G +++ +++L  N      + + +F             L Y+                  
Sbjct: 143 GLNQMIVVELGTNPLKSSGIENGAFQ--------GMKKLSYI------------------ 176

Query: 728 DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
              +   N   I     +P  LT + L  N+   +   S+  L  L  L L  N++    
Sbjct: 177 --RIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVD 232

Query: 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
              L N  +L  L L+NN  L ++P  L +  +++   + +N ++
Sbjct: 233 NGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNIS 276

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.8 bits (200), Expect = 1e-16
 Identities = 55/273 (20%), Positives = 99/273 (36%), Gaps = 36/273 (13%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
              +L L +N ++ +      +    L  L L  N      P  F    +L  + LS N 
Sbjct: 53  DTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
            +  +P  +     L+ L + +N+I  +  S    L  + V+ L +N       E     
Sbjct: 112 LK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 168

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSF-------LCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
           G  KL  I +++   T  +P           L  N +  V+ + LK L ++      L  
Sbjct: 169 GMKKLSYIRIADTNIT-TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL----AKL-- 221

Query: 722 DEVATYDYSLKMNNKGQIM--TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
                    L  N+   +   +    P  L  + L++N+    +P  +A+ K +QV+ L 
Sbjct: 222 --------GLSFNSISAVDNGSLANTPH-LRELHLNNNKLV-KVPGGLADHKYIQVVYLH 271

Query: 780 NNNLQG------HIPSCLGNLTNLESLDLSNNN 806
           NNN+          P       +   + L +N 
Sbjct: 272 NNNISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 80.4 bits (199), Expect = 2e-16
 Identities = 43/204 (21%), Positives = 77/204 (37%), Gaps = 19/204 (9%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILELVN 177
             S    L  +  + L  N  KSS I +     + +LSY+ ++ ++    IP  +    +
Sbjct: 137 RKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNI-TTIPQGLPP--S 193

Query: 178 LVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSL 237
           L  L L  N    ++      A  ++ L+NL  L L + SI +    +LAN   L  L L
Sbjct: 194 LTELHLDGNKITKVD------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHL 247

Query: 238 HSCGLQGRIQSSLGNLSKLLHLDLSLNEL------LGELPVSIGNLHSLKKLDLSINNLS 291
           ++  L  ++   L +   +  + L  N +          P       S   + L  N + 
Sbjct: 248 NNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ 306

Query: 292 -GELPTSI-QNLVSLEELDLSFNK 313
             E+  S  + +     + L   K
Sbjct: 307 YWEIQPSTFRCVYVRAAVQLGNYK 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 96.7 bits (241), Expect = 4e-21
 Identities = 73/445 (16%), Positives = 148/445 (33%), Gaps = 68/445 (15%)

Query: 108 LSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ 167
              +        + S  +L  L  L+   +        + I  L+ L+ L  + +     
Sbjct: 23  EVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM---TGIEKLTGLTKLICTSN----N 75

Query: 168 IPS-EILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL 226
           I + ++ +  NL  L    N    L++           L+ L  L+     +      ++
Sbjct: 76  ITTLDLSQNTNLTYLACDSNKLTNLDVT---------PLTKLTYLNCDTNKLTKL---DV 123

Query: 227 ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286
           +    LT+L+     L    +  + + ++L  LD  LN+ + +L   +     L  LD S
Sbjct: 124 SQNPLLTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQTQLTTLDCS 178

Query: 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHA 346
            N ++      +     L  L+   N ++      + +    QL  LD +SNK +     
Sbjct: 179 FNKITEL---DVSQNKLLNRLNCDTNNIT-----KLDLNQNIQLTFLDCSSNKLT---EI 227

Query: 347 SIGNLRSLEVLAIGRCNFSGRIPSSLRNLT-------QLITLDLSQNSYRGTMELDFL-- 397
            +  L  L          +    S+L  LT        L+ +DL+ N+     + +    
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRK 287

Query: 398 -----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHL 452
                +     L +L   +  ++ L  ++ N    K   + L +  L E    + +   L
Sbjct: 288 IKELDVTHNTQLYLLDCQAAGITELD-LSQNP---KLVYLYLNNTELTELD--VSHNTKL 341

Query: 453 MLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS 512
             L   +  I     S         L+    +        ++ +         LT+ +S 
Sbjct: 342 KSLSCVNAHI-QDFSSV---GKIPALNNNFEAEGQTITMPKETLTN-----NSLTIAVSP 392

Query: 513 NNLQG---PLPVPPSRTVNYLVSNN 534
           + L     P+ + P     Y  + N
Sbjct: 393 DLLDQFGNPMNIEPGDGGVYDQATN 417

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 90.5 bits (225), Expect = 4e-19
 Identities = 68/405 (16%), Positives = 127/405 (31%), Gaps = 50/405 (12%)

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
                 +   +      S + L +L  LD   + ++        I   T L  L  TSN 
Sbjct: 20  FASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD----MTGIEKLTGLTKLICTSNN 75

Query: 340 FSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLV 399
            +      +    +L  LA      +      +  LT+L  L+   N      +LD    
Sbjct: 76  IT---TLDLSQNTNLTYLACDSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVS-- 124

Query: 400 SLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSS 459
               L  L+ + N L+ +      + + + T +       I   +       L  LD S 
Sbjct: 125 QNPLLTYLNCARNTLTEI----DVSHNTQLTELDCHLNKKITKLDVTPQT-QLTTLDCSF 179

Query: 460 NRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPL 519
           N+I     S       + L+ LN   N +T  D  L         L  LD SSN L   +
Sbjct: 180 NKITELDVSQN-----KLLNRLNCDTNNITKLD--LNQNIQ----LTFLDCSSNKLTE-I 227

Query: 520 PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILD 579
            V P   + Y   + + + E+   +  L  L  L     +L  +        +    ++ 
Sbjct: 228 DVTPLTQLTYFDCSVNPLTELD--VSTLSKLTTLHCIQTDLLEI------DLTHNTQLIY 279

Query: 580 LRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS 639
            +A              ++L ++D         +   L    KL +L + + ++ ++   
Sbjct: 280 FQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTELD-- 334

Query: 640 WLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
            +     L  L   +      I++         L     +  +  
Sbjct: 335 -VSHNTKLKSLSCVNAH----IQDFSSVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 87.8 bits (218), Expect = 2e-18
 Identities = 82/465 (17%), Positives = 139/465 (29%), Gaps = 126/465 (27%)

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
            E+L+ L +LD    SI + +   +  L+ LT L   S  +       L   + L +L  
Sbjct: 38  EEQLATLTSLDCHNSSI-TDMT-GIEKLTGLTKLICTSNNIT---TLDLSQNTNLTYLAC 92

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321
             N+L     + +  L  L  L+   N L+      +     L  L+ + N L+      
Sbjct: 93  DSNKLTN---LDVTPLTKLTYLNCDTNKLT---KLDVSQNPLLTYLNCARNTLT-----E 141

Query: 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
           I + + TQL  LD   NK   +L   +     L  L       +      +     L  L
Sbjct: 142 IDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE---LDVSQNKLLNRL 196

Query: 382 DLSQNSYRGTMELDFL-LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440
           +   N       +  L L     L  L  SSN L+ +                       
Sbjct: 197 NCDTN------NITKLDLNQNIQLTFLDCSSNKLTEID---------------------- 228

Query: 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPG 500
                +     L   D S N +  ++    L      L+ L+     L            
Sbjct: 229 -----VTPLTQLTYFDCSVNPLT-ELDVSTL----SKLTTLHCIQTDLL----------- 267

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNL 560
                  +DL+ N           + + +       I E+   +     L +L      +
Sbjct: 268 ------EIDLTHNT----------QLIYFQAEGCRKIKELD--VTHNTQLYLLDCQAAGI 309

Query: 561 SGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI 618
           + L        S   KL  L L                  L  +D+S             
Sbjct: 310 TEL------DLSQNPKLVYLYLNNTE--------------LTELDVS------------- 336

Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE 663
           + +KL+ L   +  I+D   S +G +P L        +   + +E
Sbjct: 337 HNTKLKSLSCVNAHIQDF--SSVGKIPALNNNFEAEGQTITMPKE 379

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 75.1 bits (185), Expect = 3e-14
 Identities = 55/333 (16%), Positives = 111/333 (33%), Gaps = 64/333 (19%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L+   + L     +   + +   L +LN A N     ++     + ++L+ L+   +  
Sbjct: 110 YLNCDTNKL-----TKLDVSQNPLLTYLNCARNTLTEIDVS----HNTQLTELDCHLNKK 160

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
                 ++     L +LD S N    L++          +   L  L+    +I      
Sbjct: 161 IT--KLDVTPQTQLTTLDCSFNKITELDV---------SQNKLLNRLNCDTNNITKL--- 206

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
           +L     LTFL   S  L    +  +  L++L + D S+N L  EL VS   L  L  L 
Sbjct: 207 DLNQNIQLTFLDCSSNKLT---EIDVTPLTQLTYFDCSVNPL-TELDVS--TLSKLTTLH 260

Query: 285 LSINNLSGELPTS--------------------IQNLVSLEELDLSFNKLSGEFPWSIVI 324
               +L  E+  +                    + +   L  LD     ++      + +
Sbjct: 261 CIQTDLL-EIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-----ELDL 314

Query: 325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLS 384
               +L  L   + + + EL   + +   L+ L+    +      SS+  +  L     +
Sbjct: 315 SQNPKLVYLYLNNTELT-EL--DVSHNTKLKSLSCVNAHIQD--FSSVGKIPALNNNFEA 369

Query: 385 QNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLL 417
           +       +         N   +++S + L   
Sbjct: 370 EGQTITMPKETLTN----NSLTIAVSPDLLDQF 398

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 72.8 bits (179), Expect = 2e-13
 Identities = 67/466 (14%), Positives = 128/466 (27%), Gaps = 117/466 (25%)

Query: 374 NLTQLITLDLSQNSYRGTMELDFLLVS-LKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVV 432
           N    +       +       D +    L  L  L   ++ ++ +T +   T   K    
Sbjct: 19  NFASEVAAAFEMQA------TDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLIC- 71

Query: 433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
              + N I   +  +N + L  L   SN++     + L       L+ LN   N LT  D
Sbjct: 72  ---TSNNITTLDLSQNTN-LTYLACDSNKLTNLDVTPL-----TKLTYLNCDTNKLTKLD 122

Query: 493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEI 552
                       L  L+ + N L   + V  +  +  L  + +        +     L  
Sbjct: 123 ------VSQNPLLTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKITKLD-VTPQTQLTT 174

Query: 553 LVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ 610
           L  S N ++ L        S    L+ L+   NN              +  +DL+     
Sbjct: 175 LDCSFNKITEL------DVSQNKLLNRLNCDTNN--------------ITKLDLN----- 209

Query: 611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF 670
                      +L FLD   N++ +I    +  L  LT      N    +          
Sbjct: 210 --------QNIQLTFLDCSSNKLTEID---VTPLTQLTYFDCSVNPLTELD-----VSTL 253

Query: 671 SKLRIIDLSNNRFT----GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT 726
           SKL  +                   +      + +   D+ +                  
Sbjct: 254 SKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQ--------------- 298

Query: 727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH 786
                                 L  +   +     +    ++    L  L L+N  L   
Sbjct: 299 ----------------------LYLLDCQAAGITEL---DLSQNPKLVYLYLNNTELT-E 332

Query: 787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
           +   + + T L+SL   N + +      + ++  L     ++    
Sbjct: 333 LD--VSHNTKLKSLSCVNAH-IQDFS-SVGKIPALNNNFEAEGQTI 374

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 54.7 bits (132), Expect = 9e-08
 Identities = 55/367 (14%), Positives = 107/367 (29%), Gaps = 67/367 (18%)

Query: 466 IPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSR 525
              W  D +  +  A            ++ +        L +LD  ++++     +    
Sbjct: 11  FNDWFPDDNFASEVAAAFEMQATDTISEEQL------ATLTSLDCHNSSITDMTGIEKLT 64

Query: 526 TVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
            +  L+  ++ I  +   L +  +L  L    N L+ L    L     KL+ L+    N 
Sbjct: 65  GLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLDVTPL----TKLTYLNCD-TNK 117

Query: 586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLP 645
              +  +      L  ++ + N         + + ++L  LD   N+        +    
Sbjct: 118 LTKLDVSQNPL--LTYLNCARNTLT---EIDVSHNTQLTELDCHLNKKITKLD--VTPQT 170

Query: 646 NLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSD 705
            LT L    NK   +            L  ++   N  T KL            +     
Sbjct: 171 QLTTLDCSFNKITELDVS-----QNKLLNRLNCDTNNIT-KLD-----------LNQNIQ 213

Query: 706 LKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPT 765
           L +L           S            +NK   +    +   LT    S N    +   
Sbjct: 214 LTFLD---------CS------------SNKLTEIDVTPLTQ-LTYFDCSVNPLTEL--- 248

Query: 766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825
            ++ L  L  L+    +L   I   L + T L          + ++   +   T L   +
Sbjct: 249 DVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLLD 303

Query: 826 VSDNYLT 832
                +T
Sbjct: 304 CQAAGIT 310

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 95.6 bits (238), Expect = 6e-21
 Identities = 63/285 (22%), Positives = 105/285 (36%), Gaps = 42/285 (14%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
           +    +     ++R  +P  +   ++   L+LH   +Q    +S  +L  L  L LS N 
Sbjct: 43  NQFSKVICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNH 99

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
           +      +   L +L  L+L  N L+     +   L  L+EL L  N +      SI   
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-----SIPSY 154

Query: 326 NF---TQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
            F     L+ LD    K    +       L +L  L +  CN    IP +L  L +L  L
Sbjct: 155 AFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDEL 212

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
           DLS N         F    L +L+ L +  + + ++                        
Sbjct: 213 DLSGNHLSAIRPGSF--QGLMHLQKLWMIQSQIQVIE----------------------- 247

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
             N   N   L+ ++L+ N +   +P  L  P   +L  ++L HN
Sbjct: 248 -RNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLH-HLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 93.7 bits (233), Expect = 3e-20
 Identities = 60/251 (23%), Positives = 97/251 (38%), Gaps = 23/251 (9%)

Query: 167 QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL 226
           ++P  I    N   L+L  N      ++  +F +L     +LE L L    IR+      
Sbjct: 57  EVPDGIST--NTRLLNLHENQI--QIIKVNSFKHL----RHLEILQLSRNHIRTIEIGAF 108

Query: 227 ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI-GNLHSLKKLDL 285
             L++L  L L    L      +   LSKL  L L  N  +  +P      + SL++LDL
Sbjct: 109 NGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDL 167

Query: 286 SINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDFTSNKFS 341
                   +     + L +L  L+L+   L         I N     +L  LD + N  S
Sbjct: 168 GELKRLSYISEGAFEGLSNLRYLNLAMCNLR-------EIPNLTPLIKLDELDLSGNHLS 220

Query: 342 GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL 401
                S   L  L+ L + +        ++  NL  L+ ++L+ N+    +  D L   L
Sbjct: 221 AIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHD-LFTPL 278

Query: 402 KNLEVLSLSSN 412
            +LE + L  N
Sbjct: 279 HHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 66/283 (23%), Positives = 106/283 (37%), Gaps = 45/283 (15%)

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
           S +F+ V     NL E P+ +    +  LL+L  N+I   I          +L  L LS 
Sbjct: 42  SNQFSKVICVRKNLREVPDGI--STNTRLLNLHENQIQ-IIKVNSFKHLR-HLEILQLSR 97

Query: 486 NLLTGFDQQLVVLPG---GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS 542
           N +        +  G   G   L TL+L  N L               + N +F+     
Sbjct: 98  NHIR------TIEIGAFNGLANLNTLELFDNRLTT-------------IPNGAFVY---- 134

Query: 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIP-NTFMKESRL 599
               L  L+ L L +N +  +      +F+    L  LDL        I    F   S L
Sbjct: 135 ----LSKLKELWLRNNPIESIPS---YAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNL 187

Query: 600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659
             ++L+    +  IP +L    KL+ LD+  N +  I P     L +L  L +  ++   
Sbjct: 188 RYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQV 245

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVN 702
           I  E         L  I+L++N  T  LP   F   + ++ ++
Sbjct: 246 I--ERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 61/283 (21%), Positives = 102/283 (36%), Gaps = 37/283 (13%)

Query: 548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN 607
           +    ++    NL  + P      S    +L+L  N       N+F     L ++ LS N
Sbjct: 43  NQFSKVICVRKNLREV-PD---GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRN 98

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
             +     +    + L  L++ DN++  I       L  L  L L++N    I       
Sbjct: 99  HIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESI--PSYAF 156

Query: 668 CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
                LR +DL   +    +   +F           S+L+YL                  
Sbjct: 157 NRIPSLRRLDLGELKRLSYISEGAF--------EGLSNLRYL------------------ 190

Query: 728 DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
             +L M N  +I     +   L  + LS N    + P S   L  LQ L +  + +Q   
Sbjct: 191 --NLAMCNLREIPNLTPLIK-LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVE-LTFLEFFNVSDN 829
            +   NL +L  ++L++NN L  +P  L   L  LE  ++  N
Sbjct: 248 RNAFDNLQSLVEINLAHNN-LTLLPHDLFTPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 88.3 bits (219), Expect = 2e-18
 Identities = 63/224 (28%), Positives = 91/224 (40%), Gaps = 18/224 (8%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LV 176
             +S   L HLE L L+ N      I       L+ L+ L L  +     IP+     L 
Sbjct: 80  KVNSFKHLRHLEILQLSRN--HIRTIEIGAFNGLANLNTLELFDNR-LTTIPNGAFVYLS 136

Query: 177 NLVSLDLSLNSGYGL-ELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN-LANLSSLTF 234
            L  L L  N    +  +    F      + +L  LDLG +   S I       LS+L +
Sbjct: 137 KLKELWLRNNP---IESIPSYAFNR----IPSLRRLDLGELKRLSYISEGAFEGLSNLRY 189

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
           L+L  C L+  I  +L  L KL  LDLS N L    P S   L  L+KL +  + +    
Sbjct: 190 LNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIE 247

Query: 295 PTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
             +  NL SL E++L+ N L+   P  +       L+ +    N
Sbjct: 248 RNAFDNLQSLVEINLAHNNLT-LLPHDLF-TPLHHLERIHLHHN 289

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 47/267 (17%), Positives = 82/267 (30%), Gaps = 48/267 (17%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
           +  +L L  N +  +           L IL L  N+        F   + L  ++L  N 
Sbjct: 65  NTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNR 123

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS-NKFYGIIREPRID 667
                  + +  SKL+ L + +N I  I       +P+L  L L    +   I       
Sbjct: 124 LTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI--SEGAF 181

Query: 668 CGFSKLRIIDLSNNRFT-----GKLPSKSFLC--WNAMKIVNTSDLKYLQDVISPKEWLL 720
            G S LR ++L+            L     L    N +  +     + L           
Sbjct: 182 EGLSNLRYLNLAMCNLREIPNLTPLIKLDELDLSGNHLSAIRPGSFQGLMH--------- 232

Query: 721 SDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN 780
                                       L  + +  ++   +   +  NL+ L  +NL +
Sbjct: 233 ----------------------------LQKLWMIQSQIQVIERNAFDNLQSLVEINLAH 264

Query: 781 NNLQGHIPSCLGNLTNLESLDLSNNNF 807
           NNL          L +LE + L +N +
Sbjct: 265 NNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.3 bits (188), Expect = 1e-14
 Identities = 59/287 (20%), Positives = 98/287 (34%), Gaps = 46/287 (16%)

Query: 505 LLTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSG 562
              +     NL+  P  +  +  +  L  N   I  I  +    L  LEIL LS N++  
Sbjct: 45  FSKVICVRKNLREVPDGISTNTRLLNLHENQ--IQIIKVNSFKHLRHLEILQLSRNHIRT 102

Query: 563 LLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
           +     G+F+    L+ L+L  N         F+  S+L  + L +N  +     +    
Sbjct: 103 IEI---GAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159

Query: 621 SKLEFLDIGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679
             L  LD+G+  ++  I       L NL  L L       I   P +     KL  +DLS
Sbjct: 160 PSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI---PNLT-PLIKLDELDLS 215

Query: 680 NNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI 739
            N  +  +   SF             L +LQ +                  +  +    I
Sbjct: 216 GNHLS-AIRPGSF-----------QGLMHLQKL-----------------WMIQSQIQVI 246

Query: 740 --MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
               +D +   L  I L+ N    +       L  L+ ++L +N   
Sbjct: 247 ERNAFDNLQS-LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.8 bits (127), Expect = 3e-07
 Identities = 21/89 (23%), Positives = 40/89 (44%), Gaps = 2/89 (2%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +      + L  N+   +   S  +L+ L++L L  N+++         L NL +L+L +
Sbjct: 62  ISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFD 121

Query: 805 NNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
           N  L  IP    V L+ L+   + +N + 
Sbjct: 122 NR-LTTIPNGAFVYLSKLKELWLRNNPIE 149

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 92.7 bits (231), Expect = 8e-21
 Identities = 53/212 (25%), Positives = 85/212 (40%), Gaps = 13/212 (6%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
           +  + + L    I      +     +LT L LHS  L     ++   L+ L  LDLS N 
Sbjct: 32  AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 266 LLGELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIV 323
            L  +  +    L  L  L L    L  EL   + + L +L+ L L  N L      ++ 
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-----ALP 145

Query: 324 IGNF---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT 380
              F     L  L    N+ S     +   L SL+ L + +   +   P + R+L +L+T
Sbjct: 146 DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMT 205

Query: 381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           L L  N+    +  +  L  L+ L+ L L+ N
Sbjct: 206 LYLFANNLS-ALPTE-ALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 82.0 bits (203), Expect = 3e-17
 Identities = 54/213 (25%), Positives = 81/213 (38%), Gaps = 14/213 (6%)

Query: 129 LEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLN 186
            + + L  N    S +P+        L+ L L  +    +I +     L  L  LDLS N
Sbjct: 34  SQRIFLHGNRI--SHVPAASFRACRNLTILWLHSNVL-ARIDAAAFTGLALLEQLDLSDN 90

Query: 187 SGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRI 246
           +     +    F  L      L TL L    ++   P     L++L +L L    LQ  +
Sbjct: 91  AQLR-SVDPATFHGL----GRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-AL 144

Query: 247 QS-SLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
              +  +L  L HL L  N +      +   LHSL +L L  N ++   P + ++L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 306 ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
            L L  N LS   P   +      LQ L    N
Sbjct: 205 TLYLFANNLS-ALPTEAL-APLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 8e-16
 Identities = 52/212 (24%), Positives = 84/212 (39%), Gaps = 16/212 (7%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSS 163
           ++ L  + +  S   ++S     +L  L L  N    + I +     L+ L  L+LS ++
Sbjct: 36  RIFLHGNRI--SHVPAASFRACRNLTILWLHSNVL--ARIDAAAFTGLALLEQLDLSDNA 91

Query: 164 FFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTI 222
               +       L  L +L L       L         L   L+ L+ L L   ++   +
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELG------PGLFRGLAALQYLYLQDNAL-QAL 144

Query: 223 PHN-LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK 281
           P +   +L +LT L LH   +    + +   L  L  L L  N +    P +  +L  L 
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204

Query: 282 KLDLSINNLSGELPTSI-QNLVSLEELDLSFN 312
            L L  NNLS  LPT     L +L+ L L+ N
Sbjct: 205 TLYLFANNLS-ALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 77.7 bits (192), Expect = 9e-16
 Identities = 45/193 (23%), Positives = 73/193 (37%), Gaps = 15/193 (7%)

Query: 506 LTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSW-LCKLDSLEILVLSHNNLSGL 563
           +T       LQ  P+ +P +    +L  N   I  +P+       +L IL L  N L+ +
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFLHGNR--ISHVPAASFRACRNLTILWLHSNVLARI 71

Query: 564 LPRCLGSFSD--KLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIP-RSLIN 619
                 +F+    L  LDL  N    ++   TF    RL  + L     Q  +       
Sbjct: 72  DA---AAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRG 127

Query: 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679
            + L++L + DN ++ +       L NLT L L  N+   +    R   G   L  + L 
Sbjct: 128 LAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSV--PERAFRGLHSLDRLLLH 185

Query: 680 NNRFTGKLPSKSF 692
            NR    +   +F
Sbjct: 186 QNRVA-HVHPHAF 197

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 76.2 bits (188), Expect = 3e-15
 Identities = 51/247 (20%), Positives = 75/247 (30%), Gaps = 50/247 (20%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDF 335
           + +++ L  N +S     S +   +L  L L  N L+      I    F     L+ LD 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLA-----RIDAAAFTGLALLEQLDL 87

Query: 336 TSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLSQNSYRGTME 393
           + N     +  +    L  L  L + RC     +     R L  L  L L  N+      
Sbjct: 88  SDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNA------ 140

Query: 394 LDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQ 449
           L  L       L NL  L L  N +S +                             +  
Sbjct: 141 LQALPDDTFRDLGNLTHLFLHGNRISSVP------------------------ERAFRGL 176

Query: 450 HHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLD 509
           H L  L L  NR+   +           L  L L  N L+    + +      R L  L 
Sbjct: 177 HSLDRLLLHQNRVA-HVHPHAFRD-LGRLMTLYLFANNLSALPTEALA---PLRALQYLR 231

Query: 510 LSSNNLQ 516
           L+ N   
Sbjct: 232 LNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 75.0 bits (185), Expect = 7e-15
 Identities = 50/231 (21%), Positives = 77/231 (33%), Gaps = 35/231 (15%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           I L  N        S   C  L  L +  N +  I  +    L  L  L L  N     +
Sbjct: 37  IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
            +P    G  +L  + L       +L    F           + L+YL            
Sbjct: 97  -DPATFHGLGRLHTLHLDRCGLQ-ELGPGLF--------RGLAALQYL------------ 134

Query: 722 DEVATYDYSLKMNNKGQI--MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
                    L+ N    +   T+  + + LT + L  NR   +   +   L  L  L L 
Sbjct: 135 --------YLQDNALQALPDDTFRDLGN-LTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 780 NNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDN 829
            N +    P    +L  L +L L  NN L  +P + L  L  L++  ++DN
Sbjct: 186 QNRVAHVHPHAFRDLGRLMTLYLFANN-LSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.9 bits (182), Expect = 2e-14
 Identities = 48/219 (21%), Positives = 68/219 (31%), Gaps = 38/219 (17%)

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
               +   +L +L L SN +  +I +         L  L+LS N       QL  +    
Sbjct: 49  AASFRACRNLTILWLHSNVL-ARIDAAAFTGLA-LLEQLDLSDN------AQLRSVDPAT 100

Query: 503 ----RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHN 558
                 L TL L    LQ              +    F G        L +L+ L L  N
Sbjct: 101 FHGLGRLHTLHLDRCGLQ-------------ELGPGLFRG--------LAALQYLYLQDN 139

Query: 559 NLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRS 616
            L  L      +F D   L+ L L  N         F     L  + L  N      P +
Sbjct: 140 ALQALPD---DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196

Query: 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
             +  +L  L +  N +  +    L  L  L  L L  N
Sbjct: 197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 73.1 bits (180), Expect = 3e-14
 Identities = 44/219 (20%), Positives = 70/219 (31%), Gaps = 33/219 (15%)

Query: 477 NLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSF 536
               + L  N ++             R L  L L SN L               +   +F
Sbjct: 33  ASQRIFLHGNRISHVPAASF---RACRNLTILWLHSNVLA-------------RIDAAAF 76

Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFM 594
            G        L  LE L LS N     +     +F    +L  L L         P  F 
Sbjct: 77  TG--------LALLEQLDLSDNAQLRSVDP--ATFHGLGRLHTLHLDRCGLQELGPGLFR 126

Query: 595 KESRLGMIDLSHNLFQGRIP-RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ 653
             + L  + L  N  Q  +P  +  +   L  L +  N+I  +       L +L  L+L 
Sbjct: 127 GLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH 185

Query: 654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692
            N+   +   P       +L  + L  N  +  LP+++ 
Sbjct: 186 QNRVAHV--HPHAFRDLGRLMTLYLFANNLS-ALPTEAL 221

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 69.6 bits (171), Expect = 5e-13
 Identities = 52/230 (22%), Positives = 76/230 (33%), Gaps = 34/230 (14%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNN 514
           + L  NRI   +P+        NL+ L L  N+L   D        G   L  LDLS N 
Sbjct: 37  IFLHGNRIS-HVPAASFRACR-NLTILWLHSNVLARIDAAAF---TGLALLEQLDLSDNA 91

Query: 515 LQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSD- 573
               +                     P+    L  L  L L    L  L P   G F   
Sbjct: 92  QLRSVD--------------------PATFHGLGRLHTLHLDRCGLQELGP---GLFRGL 128

Query: 574 -KLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631
             L  L L+ +N    +P +TF     L  + L  N       R+      L+ L +  N
Sbjct: 129 AALQYLYLQ-DNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQN 187

Query: 632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
           ++  + P     L  L  L L +N    +            L+ + L++N
Sbjct: 188 RVAHVHPHAFRDLGRLMTLYLFANNLSAL--PTEALAPLRALQYLRLNDN 235

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 64.2 bits (157), Expect = 3e-11
 Identities = 43/239 (17%), Positives = 79/239 (33%), Gaps = 36/239 (15%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
           + + + L  N +S +      +    L+IL L +N         F   + L  +DLS N 
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91

Query: 609 FQGRIP-RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
               +   +     +L  L +    ++++ P     L  L  L LQ N    +       
Sbjct: 92  QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL--PDDTF 149

Query: 668 CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
                L  + L  NR +  +P ++F             L  L                  
Sbjct: 150 RDLGNLTHLFLHGNRIS-SVPERAF--------RGLHSLDRL------------------ 182

Query: 728 DYSLKMNNKGQI--MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
              L  N    +    +  +   L ++ L +N    +   ++A L+ LQ L L++N   
Sbjct: 183 --LLHQNRVAHVHPHAFRDLGR-LMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 60.4 bits (147), Expect = 6e-10
 Identities = 37/213 (17%), Positives = 66/213 (30%), Gaps = 35/213 (16%)

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
            + + +  N+I  +  +      NLT+L L SN    I  +     G + L  +DLS+N 
Sbjct: 34  SQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARI--DAAAFTGLALLEQLDLSDNA 91

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI--M 740
               +   +F             L  L                     L      ++   
Sbjct: 92  QLRSVDPATF--------HGLGRLHTL--------------------HLDRCGLQELGPG 123

Query: 741 TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 800
            +  +   L  + L  N    +   +  +L  L  L L  N +          L +L+ L
Sbjct: 124 LFRGLAA-LQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRL 182

Query: 801 DLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
            L  N  +  +      +L  L    +  N L+
Sbjct: 183 LLHQNR-VAHVHPHAFRDLGRLMTLYLFANNLS 214

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 51.9 bits (125), Expect = 3e-07
 Identities = 23/89 (25%), Positives = 33/89 (37%), Gaps = 1/89 (1%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +P     I L  NR   +   S    + L +L L +N L     +    L  LE LDLS+
Sbjct: 30  IPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89

Query: 805 NNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
           N  L  +       L  L   ++    L 
Sbjct: 90  NAQLRSVDPATFHGLGRLHTLHLDRCGLQ 118

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 91.1 bits (226), Expect = 5e-20
 Identities = 59/299 (19%), Positives = 101/299 (33%), Gaps = 23/299 (7%)

Query: 233 TFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG 292
            + S  +C     ++   G  S    L     E        I    SLK+L +    +  
Sbjct: 23  DWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPS 82

Query: 293 ELPTS---IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL----H 345
            +      +  +  L+EL L   +++G  P  ++      L  L+  +  ++        
Sbjct: 83  RILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAE 142

Query: 346 ASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLV--SLKN 403
                   L+VL+I + +        +R    L TLDLS N   G   L   L       
Sbjct: 143 LQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPT 202

Query: 404 LEVLSLSSNWLSLLTKVTSNTTS--QKFTVVGLRSCNLIEFPNFLKNQH--HLMLLDLSS 459
           L+VL+L +  +   + V S   +   +   + L   +L +            L  L+LS 
Sbjct: 203 LQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSF 262

Query: 460 NRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP 518
             +  ++P  L       LS L+LS+N L          P     +  L L  N     
Sbjct: 263 TGLK-QVPKGLP----AKLSVLDLSYNRLDRNP-----SPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 83.4 bits (206), Expect = 2e-17
 Identities = 66/277 (23%), Positives = 97/277 (35%), Gaps = 24/277 (8%)

Query: 128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSL-DLSLN 186
            LE+L    +        ++II    L  L +  +    +I    L ++ +  L +L+L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 187 SGYGLELQKPNFANLVE-KLSNLETLDLGYVSIRSTIPHNLANLS-----SLTFLSLHSC 240
           +   LE+       L+E    +L  L+L  VS  +T    LA L       L  LS+   
Sbjct: 104 N---LEVTGTAPPPLLEATGPDLNILNLRNVSW-ATRDAWLAELQQWLKPGLKVLSIAQA 159

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI----GNLHSLKKLDLSINN---LSGE 293
                    +     L  LDLS N  LGE  +          +L+ L L        SG 
Sbjct: 160 HSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGV 219

Query: 294 LPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS 353
                   V L+ LDLS N L      +      +QL SL+ +            G    
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRD-AAGAPSCDWPSQLNSLNLSFTGLK---QVPKGLPAK 275

Query: 354 LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
           L VL +       R PS    L Q+  L L  N +  
Sbjct: 276 LSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 80.7 bits (199), Expect = 1e-16
 Identities = 64/334 (19%), Positives = 104/334 (31%), Gaps = 48/334 (14%)

Query: 362 CNFSGRIP--SSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTK 419
           CNFS   P  SS  N      ++L    Y G   L++LL  +     L   ++ +  L+ 
Sbjct: 15  CNFSDPKPDWSSAFNCLGAADVEL----YGGGRSLEYLLKRVDTEADLGQFTDIIKSLS- 69

Query: 420 VTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLS 479
                T +   +        +        Q     L L +  + G  P  LL+ +  +L+
Sbjct: 70  -LKRLTVRAARIPSRILFGALRVLGISGLQE----LTLENLEVTGTAPPPLLEATGPDLN 124

Query: 480 ALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGE 539
            LNL +      D  L  L       L   L   ++                +    +  
Sbjct: 125 ILNLRNVSWATRDAWLAELQQ----WLKPGLKVLSI----------------AQAHSLNF 164

Query: 540 IPSWLCKLDSLEILVLSHNNLSGLLP----RCLGSFSDKLSILDLRANNF---FGTIPNT 592
               +    +L  L LS N   G        C   F   L +L LR        G     
Sbjct: 165 SCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFP-TLQVLALRNAGMETPSGVCSAL 223

Query: 593 FMKESRLGMIDLSHNLFQGRIPRSL-INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLI 651
                +L  +DLSHN  +           S+L  L++    ++ +     G    L+VL 
Sbjct: 224 AAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPK---GLPAKLSVLD 280

Query: 652 LQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG 685
           L  N+               ++  + L  N F  
Sbjct: 281 LSYNRLDRNPSP----DELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 59/297 (19%), Positives = 87/297 (29%), Gaps = 40/297 (13%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKE---SRLGMIDLS 605
           SLE L+   +  + L        S  L  L +RA      I    ++    S L  + L 
Sbjct: 44  SLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLE 103

Query: 606 HNLFQGRIPRSLINCS--KLEFLDIGDNQIRDIFPSWLGTL-----PNLTVLILQSNKFY 658
           +    G  P  L+  +   L  L++ +        +WL  L     P L VL +      
Sbjct: 104 NLEVTGTAPPPLLEATGPDLNILNLRNVSWAT-RDAWLAELQQWLKPGLKVLSIAQAHSL 162

Query: 659 GIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW 718
                      F  L  +DLS+N   G+    S LC      +    L+           
Sbjct: 163 NFS--CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVC 220

Query: 719 LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSI-ANLKGLQVLN 777
                      +                  L  + LS N                L  LN
Sbjct: 221 SAL--------AAARVQ-------------LQGLDLSHNSLRDAAGAPSCDWPSQLNSLN 259

Query: 778 LDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP 834
           L    L+  +P  L     L  LDLS N  L + P    EL  +   ++  N     
Sbjct: 260 LSFTGLK-QVPKGL--PAKLSVLDLSYNR-LDRNPSPD-ELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.5 bits (157), Expect = 3e-11
 Identities = 49/321 (15%), Positives = 86/321 (26%), Gaps = 69/321 (21%)

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS---LEILVLSHN 558
           +  L  +D  ++  Q    +         V        I     ++     L+ L L + 
Sbjct: 46  EYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENL 105

Query: 559 NLSGLLPRCLGSFSDK----LSILDLRANNFFGTIPNTF-MKESRLGMIDLSHNLFQGRI 613
            ++G  P  L   +      L++ ++        +       +  L ++ ++        
Sbjct: 106 EVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFS 165

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSW----LGTLPNLTVLILQSNKFYGIIRE-PRIDC 668
              +     L  LD+ DN                 P L VL L++            +  
Sbjct: 166 CEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAA 225

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYD 728
              +L+ +DLS+N             W                                 
Sbjct: 226 ARVQLQGLDLSHNSLRD-AAGAPSCDW--------------------------------- 251

Query: 729 YSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP 788
                            P  L S+ LS       +P  +     L VL+L  N L    P
Sbjct: 252 -----------------PSQLNSLNLSFTGLKQ-VPKGL--PAKLSVLDLSYNRLD-RNP 290

Query: 789 SCLGNLTNLESLDLSNNNFLG 809
           S    L  + +L L  N FL 
Sbjct: 291 SPDE-LPQVGNLSLKGNPFLD 310

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 93.6 bits (232), Expect = 8e-20
 Identities = 54/240 (22%), Positives = 98/240 (40%), Gaps = 25/240 (10%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
                 ++ +  +L    +   +  +   L+S+ ++  + +++   +   IQ L ++ +L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKL 70

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
            L+ NKL+   P    + N   L  L    NK   +L +S+ +L+ L+ L++     S  
Sbjct: 71  FLNGNKLTDIKP----LTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSLSLEHNGIS-D 123

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
           I + L +L QL +L L  N      ++   L  L  L+ LSL  N +S +  +   T  Q
Sbjct: 124 I-NGLVHLPQLESLYLGNNKIT---DITV-LSRLTKLDTLSLEDNQISDIVPLAGLTKLQ 178

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
              +    S N I     L    +L +L+L S     K  +        NL   N   N 
Sbjct: 179 NLYL----SKNHISDLRALAGLKNLDVLELFSQECLNKPINHQ-----SNLVVPNTVKNT 229

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 91.3 bits (226), Expect = 3e-19
 Identities = 51/243 (20%), Positives = 78/243 (32%), Gaps = 29/243 (11%)

Query: 117 INSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPS--EILE 174
           I               NL                L+ +  +  ++S     I S   I  
Sbjct: 11  IKQIFPDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNS----DIKSVQGIQY 63

Query: 175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTF 234
           L N+  L L+ N       +  +   L   L NL  L L    I+      L +L  L  
Sbjct: 64  LPNVTKLFLNGN-------KLTDIKPL-TNLKNLGWLFLDENKIKDLSS--LKDLKKLKS 113

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
           LSL   G+     + L +L +L  L L  N++       +  L  L  L L  N +S   
Sbjct: 114 LSLEHNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISDI- 168

Query: 295 PTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL 354
              +  L  L+ L LS N +S        +     L  L+  S +   +      NL   
Sbjct: 169 -VPLAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLNKPINHQSNLVVP 223

Query: 355 EVL 357
             +
Sbjct: 224 NTV 226

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 77.1 bits (189), Expect = 1e-14
 Identities = 59/241 (24%), Positives = 91/241 (37%), Gaps = 31/241 (12%)

Query: 85  NIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEI 144
           N+   S            + ++  +NS     I S   +  L ++  L L  N  K ++I
Sbjct: 27  NLKKKSVTDAVTQNELNSIDQIIANNS----DIKSVQGIQYLPNVTKLFLNGN--KLTDI 80

Query: 145 PSEIINLSRLSYLNLSHSSFFGQIP--SEILELVNLVSLDLSLNSGYGLELQKPNFANLV 202
              + NL  L +L L  +    +I   S + +L  L SL L  N          +   L 
Sbjct: 81  -KPLTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSLEHN-------GISDINGL- 127

Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQ--SSLGNLSKLLHLD 260
             L  LE+L LG   I  T    L+ L+ L  LSL       +I     L  L+KL +L 
Sbjct: 128 VHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDN----QISDIVPLAGLTKLQNLY 181

Query: 261 LSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPW 320
           LS N +  +L  ++  L +L  L+L       +      NLV    +  +   L      
Sbjct: 182 LSKNHIS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239

Query: 321 S 321
           S
Sbjct: 240 S 240

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 76.3 bits (187), Expect = 2e-14
 Identities = 50/292 (17%), Positives = 93/292 (31%), Gaps = 59/292 (20%)

Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLF 609
           +   +     +  + P    +F+ +    +L+  +    +    +    +  I  +++  
Sbjct: 1   MGETITVSTPIKQIFP--DDAFA-ETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDI 55

Query: 610 QGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCG 669
           +  +   +     +  L +  N++ DI P  L  L NL  L L  NK    I++      
Sbjct: 56  K-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENK----IKDLSSLKD 107

Query: 670 FSKLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
             KL+ + L +N  +       LP    L     KI + + L  L               
Sbjct: 108 LKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTK------------- 154

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ 784
                                   L ++ L  N+   +    +A L  LQ L L  N++ 
Sbjct: 155 ------------------------LDTLSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS 188

Query: 785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP 836
                 L  L NL+ L+L +   L +       L        +D  L  P  
Sbjct: 189 --DLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 238

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 72.1 bits (176), Expect = 4e-13
 Identities = 58/331 (17%), Positives = 102/331 (30%), Gaps = 49/331 (14%)

Query: 446 LKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFL 505
                  +  +L    +   +    L+    ++  +  +++ +      +  LP     +
Sbjct: 17  DDAFAETIKDNLKKKSVTDAVTQNELN----SIDQIIANNSDIKSVQG-IQYLPN----V 67

Query: 506 LTLDLSSNNLQ--GPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
             L L+ N L    PL    +    +L  N   I ++ S L  L  L+ L L HN +S +
Sbjct: 68  TKLFLNGNKLTDIKPLTNLKNLGWLFLDENK--IKDLSS-LKDLKKLKSLSLEHNGISDI 124

Query: 564 LPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL 623
               L     +L  L L  N                 + D++           L   +KL
Sbjct: 125 NG--LVHLP-QLESLYLGNNK----------------ITDIT----------VLSRLTKL 155

Query: 624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF 683
           + L + DNQI DI P  L  L  L  L L  N     I + R   G   L +++L +   
Sbjct: 156 DTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH----ISDLRALAGLKNLDVLELFSQEC 209

Query: 684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYD 743
             K  +          + NT       ++IS         V  +                
Sbjct: 210 LNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPV 269

Query: 744 KVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774
            +            +    + T   ++ G  
Sbjct: 270 TIGKAKARFHGRVTQPLKEVYTVSYDVDGTV 300

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 67.8 bits (165), Expect = 8e-12
 Identities = 51/310 (16%), Positives = 101/310 (32%), Gaps = 64/310 (20%)

Query: 530 LVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN----- 584
            ++ ++ I +I              L   +++  +        + +  +    ++     
Sbjct: 4   TITVSTPIKQIFP-DDAFAETIKDNLKKKSVTDAVT--QNEL-NSIDQIIANNSDIKSVQ 59

Query: 585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPR--SLINCSKLEFLDIGDNQIRDIFPSWLG 642
               +PN       +  + L+ N    ++     L N   L +L + +N+I+D+    L 
Sbjct: 60  GIQYLPN-------VTKLFLNGN----KLTDIKPLTNLKNLGWLFLDENKIKDLSS--LK 106

Query: 643 TLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVN 702
            L  L  L L+ N     I +        +L  + L NN+ T               I  
Sbjct: 107 DLKKLKSLSLEHNG----ISDINGLVHLPQLESLYLGNNKIT--------------DITV 148

Query: 703 TSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGM 762
            S L  L  +                 SL+ N    I+    +   L ++ LS N    +
Sbjct: 149 LSRLTKLDTL-----------------SLEDNQISDIVPLAGLTK-LQNLYLSKNHISDL 190

Query: 763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLE 822
               +A LK L VL L +        +   NL    ++  ++ +     P+ + +    E
Sbjct: 191 RA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL--VTPEIISDDGDYE 246

Query: 823 FFNVSDNYLT 832
             NV  +   
Sbjct: 247 KPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 56.3 bits (135), Expect = 3e-08
 Identities = 44/211 (20%), Positives = 77/211 (36%), Gaps = 23/211 (10%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L L  +     I   SSL  L  L+ L+L  N    S+I   +++L +L  L L ++  
Sbjct: 91  WLFLDEN----KIKDLSSLKDLKKLKSLSLEHNGI--SDING-LVHLPQLESLYLGNN-- 141

Query: 165 FGQI--PSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTI 222
             +I   + +  L  L +L L  N       Q  +   L   L+ L+ L L    I    
Sbjct: 142 --KITDITVLSRLTKLDTLSLEDN-------QISDIVPL-AGLTKLQNLYLSKNHISDLR 191

Query: 223 PHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK 282
              LA L +L  L L S     +  +   NL     +  +   L+    +S    +    
Sbjct: 192 A--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 249

Query: 283 LDLSINNLSGELPTSIQNLVSLEELDLSFNK 313
           +   +   + E+       V++ +    F+ 
Sbjct: 250 VKWHLPEFTNEVSFIFYQPVTIGKAKARFHG 280

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 91.0 bits (226), Expect = 2e-19
 Identities = 58/283 (20%), Positives = 99/283 (34%), Gaps = 45/283 (15%)

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
           S +F+ V      L E P  +    +   L+L  N I   I +        +L  L L  
Sbjct: 53  SNQFSKVVCTRRGLSEVPQGI--PSNTRYLNLMENNIQ-MIQADTFRHLH-HLEVLQLGR 108

Query: 486 NLLTGFDQQLVVLPG---GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS 542
           N +        +  G   G   L TL+L  N L              ++ + +F      
Sbjct: 109 NSIR------QIEVGAFNGLASLNTLELFDNWLT-------------VIPSGAFEY---- 145

Query: 543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIP-NTFMKESRL 599
               L  L  L L +N +  +      +F+    L  LDL        I    F     L
Sbjct: 146 ----LSKLRELWLRNNPIESIPS---YAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNL 198

Query: 600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659
             ++L     +  +P +L     LE L++  N   +I P     L +L  L + +++   
Sbjct: 199 KYLNLGMCNIK-DMP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSL 256

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVN 702
           I  E     G + L  ++L++N  +  LP   F     +  ++
Sbjct: 257 I--ERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELH 296

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 89.0 bits (221), Expect = 9e-19
 Identities = 61/224 (27%), Positives = 88/224 (39%), Gaps = 18/224 (8%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LV 176
            + +   L HLE L L  N     +I       L+ L+ L L  +     IPS   E L 
Sbjct: 91  QADTFRHLHHLEVLQLGRN--SIRQIEVGAFNGLASLNTLELFDNWL-TVIPSGAFEYLS 147

Query: 177 NLVSLDLSLNSGYGL-ELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN-LANLSSLTF 234
            L  L L  N    +  +    F  +     +L  LDLG +     I       L +L +
Sbjct: 148 KLRELWLRNNP---IESIPSYAFNRV----PSLMRLDLGELKKLEYISEGAFEGLFNLKY 200

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
           L+L  C ++  + + L  L  L  L++S N      P S   L SLKKL +  + +S   
Sbjct: 201 LNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE 258

Query: 295 PTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
             +   L SL EL+L+ N LS   P  +       L  L    N
Sbjct: 259 RNAFDGLASLVELNLAHNNLS-SLPHDLF-TPLRYLVELHLHHN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 80.9 bits (200), Expect = 4e-16
 Identities = 50/242 (20%), Positives = 80/242 (33%), Gaps = 36/242 (14%)

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
            +  ++ HHL +L L  N I  +I     +    +L+ L L  N LT             
Sbjct: 92  ADTFRHLHHLEVLQLGRNSIR-QIEVGAFNGLA-SLNTLELFDNWLTVIPSGA---FEYL 146

Query: 503 RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS-WLCKLDSLEILVLSHNNLS 561
             L  L L +N ++                       IPS    ++ SL  L L      
Sbjct: 147 SKLRELWLRNNPIE----------------------SIPSYAFNRVPSLMRLDLGELKKL 184

Query: 562 GLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLIN 619
             +    G+F     L  L+L   N              L  +++S N F    P S   
Sbjct: 185 EYISE--GAFEGLFNLKYLNLGMCNI--KDMPNLTPLVGLEELEMSGNHFPEIRPGSFHG 240

Query: 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS 679
            S L+ L + ++Q+  I  +    L +L  L L  N    +     +      L  + L 
Sbjct: 241 LSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSL--PHDLFTPLRYLVELHLH 298

Query: 680 NN 681
           +N
Sbjct: 299 HN 300

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 78.2 bits (193), Expect = 3e-15
 Identities = 56/315 (17%), Positives = 90/315 (28%), Gaps = 80/315 (25%)

Query: 505 LLTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPS-WLCKLDSLEILVLSHNNLSG 562
              +  +   L   P  +P +     L+ NN  I  I +     L  LE+L L  N++  
Sbjct: 56  FSKVVCTRRGLSEVPQGIPSNTRYLNLMENN--IQMIQADTFRHLHHLEVLQLGRNSIRQ 113

Query: 563 LLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC 620
           +     G+F+    L+ L+L  N               L +I             +    
Sbjct: 114 IEV---GAFNGLASLNTLELFDN--------------WLTVIP----------SGAFEYL 146

Query: 621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQS-NKFYGIIREPRIDCGFSKLRIIDLS 679
           SKL  L + +N I  I       +P+L  L L    K   I        G   L+ ++L 
Sbjct: 147 SKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI--SEGAFEGLFNLKYLNLG 204

Query: 680 NNRFT-----GKLPSKSFLC--WNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLK 732
                       L     L    N    +       L                       
Sbjct: 205 MCNIKDMPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSS--------------------- 243

Query: 733 MNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 792
                           L  + + +++   +   +   L  L  LNL +NNL         
Sbjct: 244 ----------------LKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFT 287

Query: 793 NLTNLESLDLSNNNF 807
            L  L  L L +N +
Sbjct: 288 PLRYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.9 bits (192), Expect = 4e-15
 Identities = 52/269 (19%), Positives = 90/269 (33%), Gaps = 50/269 (18%)

Query: 572 SDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631
           S++ S +          +P      +R   ++L  N  Q     +  +   LE L +G N
Sbjct: 53  SNQFSKVVCTRRGLS-EVPQGIPSNTRY--LNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKS 691
            IR I       L +L  L L  N    I          SKLR + L NN     +PS +
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVI--PSGAFEYLSKLRELWLRNNPIE-SIPSYA 166

Query: 692 FLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD---- 747
           F           + +  L                     L +    ++   + + +    
Sbjct: 167 F-----------NRVPSLM-------------------RLDLGELKKL---EYISEGAFE 193

Query: 748 ---ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
               L  + L        +P  +  L GL+ L +  N+     P     L++L+ L + N
Sbjct: 194 GLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMN 251

Query: 805 NNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
           +  +  I +     L  L   N++ N L+
Sbjct: 252 SQ-VSLIERNAFDGLASLVELNLAHNNLS 279

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 77.1 bits (190), Expect = 7e-15
 Identities = 59/290 (20%), Positives = 92/290 (31%), Gaps = 49/290 (16%)

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362
              ++  +   LS E P  I     +  + L+   N        +  +L  LEVL +GR 
Sbjct: 55  QFSKVVCTRRGLS-EVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109

Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL----LVSLKNLEVLSLSSNWLSLLT 418
           +       +   L  L TL+L  N       L  +       L  L  L L +N +  + 
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDN------WLTVIPSGAFEYLSKLRELWLRNNPIESIP 163

Query: 419 KVT-SNTTSQKFTVVGLRSCNLIEF--PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPST 475
               +   S       L     +E+      +   +L  L+L    I   +P+       
Sbjct: 164 SYAFNRVPSLMRLD--LGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNL---TPL 217

Query: 476 QNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNS 535
             L  L +S N              G   L  L + ++ +               +  N+
Sbjct: 218 VGLEELEMSGNHFPEIRPG---SFHGLSSLKKLWVMNSQVSL-------------IERNA 261

Query: 536 FIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
           F G        L SL  L L+HNNLS L           L  L L  N +
Sbjct: 262 FDG--------LASLVELNLAHNNLSSLPHDLFTPLR-YLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 44.4 bits (105), Expect = 1e-04
 Identities = 25/91 (27%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
            + ++ +       +P  I      + LNL  NN+Q        +L +LE L L  N+ +
Sbjct: 56  FSKVVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNS-I 111

Query: 809 GQIPQQ-LVELTFLEFFNVSDNYLTGPIPQG 838
            QI       L  L    + DN+LT  IP G
Sbjct: 112 RQIEVGAFNGLASLNTLELFDNWLTV-IPSG 141

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 90.8 bits (226), Expect = 3e-19
 Identities = 101/522 (19%), Positives = 163/522 (31%), Gaps = 113/522 (21%)

Query: 177 NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRST----IPHNLANLSSL 232
           ++ SLD+         L    +A L+  L   + + L    +       I   L    +L
Sbjct: 4   DIQSLDIQCEE-----LSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPAL 58

Query: 233 TFLSLHSCGLQGR----IQSSLGNLS-KLLHLDLSLNELLGE----LPVSIGNLHSLKKL 283
             L+L S  L       +   L   S K+  L L    L G     L  ++  L +L++L
Sbjct: 59  AELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 284 DLSINNLSGELPTSI-----QNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDFT 336
            LS N L       +          LE+L L +  LS      +  V+      + L  +
Sbjct: 119 HLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVS 178

Query: 337 SNKFSGELHASIG-----NLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQN- 386
           +N  +      +      +   LE L +  C  +      +   + +   L  L L  N 
Sbjct: 179 NNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNK 238

Query: 387 -SYRGTMEL-DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN 444
               G  EL   LL     L  L +    +               T  G           
Sbjct: 239 LGDVGMAELCPGLLHPSSRLRTLWIWECGI---------------TAKGCGD-----LCR 278

Query: 445 FLKNQHHLMLLDLSSNRIHGK----IPSWLLDPSTQNLSALNLSHNLLTGFD-QQLVVLP 499
            L+ +  L  L L+ N +  +    +   LL+P  Q L +L +     T         + 
Sbjct: 279 VLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQ-LESLWVKSCSFTAACCSHFSSVL 337

Query: 500 GGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV----SNNSFIGEIPSWLCKLDSLEILVL 555
              RFLL L +S+N L+          V  L        S              L +L L
Sbjct: 338 AQNRFLLELQISNNRLE-------DAGVRELCQGLGQPGS-------------VLRVLWL 377

Query: 556 SHNNLSGLLPRCLGSF---SDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR 612
           +  ++S      L +    +  L  LDL  N                G++ L  ++ Q  
Sbjct: 378 ADCDVSDSSCSSLAATLLANHSLRELDLSNNCL-----------GDAGILQLVESVRQ-- 424

Query: 613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTL----PNLTVL 650
                     LE L + D    +     L  L    P+L V+
Sbjct: 425 ------PGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 460

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 86.9 bits (216), Expect = 6e-18
 Identities = 94/471 (19%), Positives = 149/471 (31%), Gaps = 102/471 (21%)

Query: 206 SNLETLDLGYVSI-RSTIPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLD 260
            ++++LD+    +  +     L  L     + L  CGL       I S+L     L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 261 LSLNELLGELPVSIGNL-----HSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSF 311
           L  NEL       +          ++KL L    L+G     L ++++ L +L+EL LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 312 NKLSGEFPWSIVIG---NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRI 368
           N L       +  G      +L+ L       S      +                    
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLA------------------- 163

Query: 369 PSSLRNLTQLITLDLSQN--SYRGTMEL-DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
            S LR       L +S N  +  G   L   L  S   LE L L S  ++          
Sbjct: 164 -SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVT---------- 212

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGK----IPSWLLDPSTQNLSAL 481
                     S N  +    + ++  L  L L SN++       +   LL PS+  L  L
Sbjct: 213 ----------SDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS-RLRTL 261

Query: 482 NLSHNLLTGFD-QQLVVLPGGKRFLLTLDLSSNNLQ-------GPLPVPPSRTVNYLVSN 533
            +    +T      L  +   K  L  L L+ N L            + P   +  L   
Sbjct: 262 WIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVK 321

Query: 534 NSFIGE-----IPSWLCKLDSLEILVLSHNNLSG----LLPRCLGSFSDKLSILDLRANN 584
           +            S L +   L  L +S+N L       L + LG     L +L L   +
Sbjct: 322 SCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381

Query: 585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRD 635
                       S      L+          +L+    L  LD+ +N + D
Sbjct: 382 V-----------SDSSCSSLA---------ATLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 81.9 bits (203), Expect = 2e-16
 Identities = 77/432 (17%), Positives = 133/432 (30%), Gaps = 71/432 (16%)

Query: 129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ----IPSEILELVNLVSLDLS 184
           ++ L++   +   +     +  L +   + L            I S +     L  L+L 
Sbjct: 5   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 64

Query: 185 LNSGYGLELQKPNFANLVEKLSN----LETLDLGYVSIRST----IPHNLANLSSLTFLS 236
            N      L       +++ L      ++ L L    +       +   L  L +L  L 
Sbjct: 65  SNE-----LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELH 119

Query: 237 LHSC-----GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIG----NLHSLKKLDLSI 287
           L        GLQ   +  L    +L  L L    L       +          K+L +S 
Sbjct: 120 LSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSN 179

Query: 288 NNLSGELPTSI-----QNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDFTSNKF 340
           N+++      +      +   LE L L    ++ +    +  ++ +   L+ L   SNK 
Sbjct: 180 NDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL 239

Query: 341 SGE-----LHASIGNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQN--SYR 389
                       +     L  L I  C  + +    +   LR    L  L L+ N     
Sbjct: 240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDE 299

Query: 390 GTMEL-DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKN 448
           G   L + LL     LE L + S                         C+     + L  
Sbjct: 300 GARLLCETLLEPGCQLESLWVKSCSF------------------TAACCSHFS--SVLAQ 339

Query: 449 QHHLMLLDLSSNRIHGK----IPSWLLDPSTQNLSALNLSHNLLTGFD-QQLVVLPGGKR 503
              L+ L +S+NR+       +   L  P +  L  L L+   ++      L        
Sbjct: 340 NRFLLELQISNNRLEDAGVRELCQGLGQPGS-VLRVLWLADCDVSDSSCSSLAATLLANH 398

Query: 504 FLLTLDLSSNNL 515
            L  LDLS+N L
Sbjct: 399 SLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 6e-15
 Identities = 84/441 (19%), Positives = 136/441 (30%), Gaps = 96/441 (21%)

Query: 279 SLKKLDLSINNLSGE-LPTSIQNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDF 335
            ++ LD+    LS       +  L   + + L    L+      I   +     L  L+ 
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 336 TSNKFSGELHASIGNL-----RSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLSQN 386
            SN+        +          ++ L++  C  +G     + S+LR L  L  L LS N
Sbjct: 64  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDN 123

Query: 387 --SYRGTMEL-DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
                G   L + LL     LE L L                    +             
Sbjct: 124 LLGDAGLQLLCEGLLDPQCRLEKLQLEYC---------------SLSAASCEP-----LA 163

Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWL---LDPSTQNLSALNLSHNLLTGFD-QQLVVLP 499
           + L+ +     L +S+N I+      L   L  S   L AL L    +T  + + L  + 
Sbjct: 164 SVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIV 223

Query: 500 GGKRFLLTLDLSSNNLQ-------GPLPVPPSRTVNYLVSNNSFIGE-----IPSWLCKL 547
             K  L  L L SN L         P  + PS  +  L      I       +   L   
Sbjct: 224 ASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAK 283

Query: 548 DSLEILVLSHNNLSG----LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603
           +SL+ L L+ N L      LL   L     +L  L +++ +F           +      
Sbjct: 284 ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSF-----------TAACCSH 332

Query: 604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE 663
            S           L     L  L I +N++ D        +  L   + Q          
Sbjct: 333 FS---------SVLAQNRFLLELQISNNRLED------AGVRELCQGLGQPG-------- 369

Query: 664 PRIDCGFSKLRIIDLSNNRFT 684
                  S LR++ L++   +
Sbjct: 370 -------SVLRVLWLADCDVS 383

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 69.6 bits (171), Expect = 2e-12
 Identities = 80/357 (22%), Positives = 128/357 (35%), Gaps = 51/357 (14%)

Query: 105 KLDLSNSCL--YGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS----EIINLSRLSYLN 158
           KL L N CL   G    SS+L  L  L+ L+L+ N    + +       +    RL  L 
Sbjct: 89  KLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148

Query: 159 LSHSSFFGQIPSEILELV----NLVSLDLSLNSGYGLELQKPNFANLVEKLS----NLET 210
           L + S        +  ++    +   L +S N      + +     L + L      LE 
Sbjct: 149 LEYCSLSAASCEPLASVLRAKPDFKELTVSNND-----INEAGVRVLCQGLKDSPCQLEA 203

Query: 211 LDLGYVSIRST----IPHNLANLSSLTFLSLHSCGLQGR-----IQSSLGNLSKLLHLDL 261
           L L    + S     +   +A+ +SL  L+L S  L            L   S+L  L +
Sbjct: 204 LKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWI 263

Query: 262 SLNEL----LGELPVSIGNLHSLKKLDLSINNLSGE-----LPTSIQNLVSLEELDLSFN 312
               +     G+L   +    SLK+L L+ N L  E       T ++    LE L +   
Sbjct: 264 WECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC 323

Query: 313 KLSGEFPWSI--VIGNFTQLQSLDFTSNKFSGE----LHASIG-NLRSLEVLAIGRCNFS 365
             +         V+     L  L  ++N+        L   +G     L VL +  C+ S
Sbjct: 324 SFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 366 ----GRIPSSLRNLTQLITLDLSQN--SYRGTMEL-DFLLVSLKNLEVLSLSSNWLS 415
                 + ++L     L  LDLS N     G ++L + +      LE L L   + S
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 64.6 bits (158), Expect = 7e-11
 Identities = 78/447 (17%), Positives = 139/447 (31%), Gaps = 80/447 (17%)

Query: 402 KNLEVLSLSSNWLS-----LLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLD 456
            +++ L +    LS      L  +       +    GL      +  + L+    L  L+
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 457 LSSNRIHG---KIPSWLLDPSTQNLSALNLSHNLLTGFD-QQLVVLPGGKRFLLTLDLSS 512
           L SN +           L   +  +  L+L +  LTG     L         L  L LS 
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122

Query: 513 NNLQGP-------LPVPPSRTVNYLVSNNSFIGE-----IPSWLCKLDSLEILVLSHNNL 560
           N L            + P   +  L      +       + S L      + L +S+N++
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI 182

Query: 561 SG----LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRS 616
           +     +L + L     +L  L L +              +     DL            
Sbjct: 183 NEAGVRVLCQGLKDSPCQLEALKLESCGV-----------TSDNCRDLC---------GI 222

Query: 617 LINCSKLEFLDIGDNQIRD-----IFPSWLGTLPNLTVLILQSNKF--YGIIREPRIDCG 669
           + + + L  L +G N++ D     + P  L     L  L +        G     R+   
Sbjct: 223 VASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282

Query: 670 FSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDY 729
              L+ + L+ N    +      LC   +       L+ L  V S      +    ++  
Sbjct: 283 KESLKELSLAGNELGDE--GARLLC-ETLLEPGCQ-LESL-WVKSCS---FTAACCSHFS 334

Query: 730 SLKMNNKGQIMTYDKVPDILTSIILSSNRF--DGMIPTSIA---NLKGLQVLNLDNNNLQ 784
           S+   N+            L  + +S+NR    G+             L+VL L + ++ 
Sbjct: 335 SVLAQNRF-----------LLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

Query: 785 ----GHIPSCLGNLTNLESLDLSNNNF 807
                 + + L    +L  LDLSNN  
Sbjct: 384 DSSCSSLAATLLANHSLRELDLSNNCL 410

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 51.9 bits (125), Expect = 7e-07
 Identities = 63/386 (16%), Positives = 109/386 (28%), Gaps = 91/386 (23%)

Query: 476 QNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNS 535
            ++ +L++    L+  D +   L    +    + L    L                   +
Sbjct: 3   LDIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGL-----------------TEA 43

Query: 536 FIGEIPSWLCKLDSLEILVLSHNNLSG----LLPRCLGSFSDKLSILDLRANNFFGTIPN 591
              +I S L    +L  L L  N L       + + L + S K+  L L+          
Sbjct: 44  RCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL------ 97

Query: 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRD-----IFPSWLGTLPN 646
                +  G   LS          +L     L+ L + DN + D     +    L     
Sbjct: 98  -----TGAGCGVLS---------STLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCR 143

Query: 647 LTVLILQSNKFYGIIREP--RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTS 704
           L  L L+         EP   +       + + +SNN           LC       +  
Sbjct: 144 LEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEA--GVRVLC--QGLKDSPC 199

Query: 705 DLKYLQDVISPKEWL----LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRF- 759
            L+ L         L    ++ +       +  +              L  + L SN+  
Sbjct: 200 QLEAL--------KLESCGVTSDNCRDLCGIVASKA-----------SLRELALGSNKLG 240

Query: 760 -DGMIPTSIANLKG---LQVLNLDNNNLQ----GHIPSCLGNLTNLESLDLSNNNFLGQI 811
             GM       L     L+ L +    +     G +   L    +L+ L L+ N    + 
Sbjct: 241 DVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEG 300

Query: 812 PQQLVEL-----TFLEFFNVSDNYLT 832
            + L E        LE   V     T
Sbjct: 301 ARLLCETLLEPGCQLESLWVKSCSFT 326

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 44.6 bits (106), Expect = 1e-04
 Identities = 52/256 (20%), Positives = 82/256 (32%), Gaps = 43/256 (16%)

Query: 97  SENTGHVMKLDLSNSCL--YGSINSSSSLFKLVHLEWLNLAFNDFKSSEI----PSEIIN 150
            ++   +  L L +  +      +    +     L  L L  N      +    P  +  
Sbjct: 195 KDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP 254

Query: 151 LSRLSYLNLSHSSF----FGQIPSEILELVNLVSLDLSLN--SGYGLE-----LQKPNFA 199
            SRL  L +          G +   +    +L  L L+ N     G       L +P   
Sbjct: 255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPG-- 312

Query: 200 NLVEKLSNLETLDLGYVSIRST----IPHNLANLSSLTFLSLHSCGLQGRIQSSLG---- 251
                   LE+L +   S  +         LA    L  L + +  L+      L     
Sbjct: 313 ------CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLG 366

Query: 252 -NLSKLLHLDLSLNEL----LGELPVSIGNLHSLKKLDLSINNLSGE----LPTSI-QNL 301
              S L  L L+  ++       L  ++   HSL++LDLS N L       L  S+ Q  
Sbjct: 367 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 426

Query: 302 VSLEELDLSFNKLSGE 317
             LE+L L     S E
Sbjct: 427 CLLEQLVLYDIYWSEE 442

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 88.9 bits (221), Expect = 3e-19
 Identities = 64/358 (17%), Positives = 101/358 (28%), Gaps = 93/358 (25%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
            LDL  N++          L  L  L L  N +S     +   L  L++L +S N L   
Sbjct: 58  LLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-- 115

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ 377
               I     + L  L    N+           +R +                    L  
Sbjct: 116 ---EIPPNLPSSLVELRIHDNR-----------IRKVP-------------KGVFSGLRN 148

Query: 378 LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437
           +  +++  N    +         L  L  L +S      LT +  +              
Sbjct: 149 MNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEA---KLTGIPKDLPE----------- 193

Query: 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ-LV 496
                         L  L L  N+I   I    L      L  L L HN +   +   L 
Sbjct: 194 -------------TLNELHLDHNKIQ-AIELEDLL-RYSKLYRLGLGHNQIRMIENGSLS 238

Query: 497 VLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLS 556
            LP     L  L L +N L                        +P+ L  L  L+++ L 
Sbjct: 239 FLPT----LRELHLDNNKLS----------------------RVPAGLPDLKLLQVVYLH 272

Query: 557 HNNLSGL-----LPRCLGSFSDKLSILDLRANN--FFGTIPNTFMKESRLGMIDLSHN 607
            NN++ +      P   G      + + L  N   ++   P TF   +    I   + 
Sbjct: 273 TNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.8 bits (218), Expect = 8e-19
 Identities = 56/388 (14%), Positives = 101/388 (26%), Gaps = 98/388 (25%)

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC 362
            L  +  S   L    P  I          LD  +N  S         L+ L  L +   
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI----SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNN 88

Query: 363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSL-KNLEVLSLSSNWLSLLTKVT 421
             S     +   L +L  L +S+N       L  +  +L  +L  L +  N +  +    
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKN------HLVEIPPNLPSSLVELRIHDNRIRKVP--- 139

Query: 422 SNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRI-HGKIPSWLLDPSTQNLSA 480
                                        ++  +++  N + +        D     L+ 
Sbjct: 140 ---------------------KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL--KLNY 176

Query: 481 LNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI 540
           L +S   LTG  + L         L  L L  N +Q              +     +   
Sbjct: 177 LRISEAKLTGIPKDLP------ETLNELHLDHNKIQ-------------AIELEDLLR-- 215

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600
                    L  L L HN +  +                            +      L 
Sbjct: 216 ------YSKLYRLGLGHNQIRMIEN-------------------------GSLSFLPTLR 244

Query: 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS------WLGTLPNLTVLILQS 654
            + L +N    R+P  L +   L+ + +  N I  +  +      +         + L +
Sbjct: 245 ELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFN 303

Query: 655 NKFYGIIREPRIDCGFSKLRIIDLSNNR 682
           N       +P      +    I   N +
Sbjct: 304 NPVPYWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 87.4 bits (217), Expect = 9e-19
 Identities = 64/336 (19%), Positives = 112/336 (33%), Gaps = 50/336 (14%)

Query: 89  CSWDGVECSEN---------TGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDF 139
           C    V+CS+          +     LDL N+ +  S         L HL  L L  N  
Sbjct: 33  CHLRVVQCSDLGLKAVPKEISPDTTLLDLQNNDI--SELRKDDFKGLQHLYALVLVNN-- 88

Query: 140 KSSEIPSEII-NLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF 198
           K S+I  +    L +L  L +S +    +IP  +    +LV L +  N     ++ K  F
Sbjct: 89  KISKIHEKAFSPLRKLQKLYISKNHL-VEIPPNLPS--SLVELRIHDNRIR--KVPKGVF 143

Query: 199 ANLVEKLSNLETLDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLL 257
           + L     N+  +++G   + ++       +   L +L +    L   I   L     L 
Sbjct: 144 SGL----RNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDL--PETLN 196

Query: 258 HLDLSLNELLGELPV-SIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
            L L  N++   + +  +     L +L L  N +      S+  L +L EL L  NKLS 
Sbjct: 197 ELHLDHNKI-QAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254

Query: 317 EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT 376
             P    + +   LQ +   +N  +                 +G  +F            
Sbjct: 255 RVP--AGLPDLKLLQVVYLHTNNIT----------------KVGVNDFCP--VGFGVKRA 294

Query: 377 QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
               + L  N              + +   +   + 
Sbjct: 295 YYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 3e-18
 Identities = 63/333 (18%), Positives = 107/333 (32%), Gaps = 66/333 (19%)

Query: 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS 426
            +P  +   T    LDL  N      + DF    L++L  L L +N +S +         
Sbjct: 47  AVPKEISPDTT--LLDLQNNDISELRKDDF--KGLQHLYALVLVNNKISKIH-------- 94

Query: 427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                                    L  L +S N +  +IP  L      +L  L +  N
Sbjct: 95  ----------------EKAFSPLRKLQKLYISKNHLV-EIPPNLP----SSLVELRIHDN 133

Query: 487 LLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCK 546
            +    + +     G R +  +++  N L+           N      +F G        
Sbjct: 134 RIRKVPKGVF---SGLRNMNCIEMGGNPLE-----------NSGFEPGAFDGL------- 172

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
              L  L +S   L+G+      +    L+ L L  N          ++ S+L  + L H
Sbjct: 173 --KLNYLRISEAKLTGIPKDLPET----LNELHLDHNKIQAIELEDLLRYSKLYRLGLGH 226

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF----YGIIR 662
           N  +     SL     L  L + +N++  + P+ L  L  L V+ L +N           
Sbjct: 227 NQIRMIENGSLSFLPTLRELHLDNNKLSRV-PAGLPDLKLLQVVYLHTNNITKVGVNDFC 285

Query: 663 EPRIDCGFSKLRIIDLSNNRFT-GKLPSKSFLC 694
                   +    I L NN     ++   +F C
Sbjct: 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 82.8 bits (205), Expect = 3e-17
 Identities = 47/238 (19%), Positives = 76/238 (31%), Gaps = 26/238 (10%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           +DL +N               L  L + +N+I  I       L  L  L +  N    I 
Sbjct: 59  LDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEI- 117

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPK----- 716
             P +    S L  + + +NR   K+P   F     M  +             P      
Sbjct: 118 -PPNL---PSSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL 172

Query: 717 --EWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774
              +L           +       I     +P+ L  + L  N+   +    +     L 
Sbjct: 173 KLNYL----------RISEAKLTGIP--KDLPETLNELHLDHNKIQAIELEDLLRYSKLY 220

Query: 775 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
            L L +N ++      L  L  L  L L NN  L ++P  L +L  L+   +  N +T
Sbjct: 221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNK-LSRVPAGLPDLKLLQVVYLHTNNIT 277

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 9e-15
 Identities = 69/360 (19%), Positives = 115/360 (31%), Gaps = 89/360 (24%)

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
              LLDL +N I  ++          +L AL L +N ++   ++       ++ L  L +
Sbjct: 55  DTTLLDLQNNDIS-ELRKDDFKGLQ-HLYALVLVNNKISKIHEK--AFSPLRK-LQKLYI 109

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
           S N+L                       EIP  L    SL  L +  N +  +     G 
Sbjct: 110 SKNHLV----------------------EIPPNL--PSSLVELRIHDNRIRKVPK---GV 142

Query: 571 FSD--KLSILDLRANNF-FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
           FS    ++ +++  N               +L  + +S       IP+ L     L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPKDLP--ETLNELH 199

Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL 687
           +  N+I+ I    L     L  L L  N+   I  E         LR + L NN+ + ++
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMI--ENGSLSFLPTLRELHLDNNKLS-RV 256

Query: 688 PSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD 747
           P+               DLK LQ V                  L  NN            
Sbjct: 257 PA------------GLPDLKLLQVV-----------------YLHTNN------------ 275

Query: 748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI--PSCLGNLTNLESLDLSNN 805
            +T +    N F  +             ++L NN +      P+    +T+  ++   N 
Sbjct: 276 -ITKV--GVNDFCPV--GFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 75.4 bits (186), Expect = 1e-14
 Identities = 62/364 (17%), Positives = 109/364 (29%), Gaps = 100/364 (27%)

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDL 510
           HL ++  S   +   +P  +    + + + L+L +N ++   +       G + L  L L
Sbjct: 34  HLRVVQCSDLGLK-AVPKEI----SPDTTLLDLQNNDISELRKDDF---KGLQHLYALVL 85

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
            +N +               +   +F          L  L+ L +S N+L  + P     
Sbjct: 86  VNNKISK-------------IHEKAFSP--------LRKLQKLYISKNHLVEIPP---NL 121

Query: 571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN-LFQGRIPRSLINCSKLEFLDIG 629
            S  L  L +  N         F     +  I++  N L          +  KL +L I 
Sbjct: 122 PS-SLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRIS 180

Query: 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS 689
           + ++  I          L  L L  NK   I  E      +SKL  + L +N+    + +
Sbjct: 181 EAKLTGIPK---DLPETLNELHLDHNKIQAI--ELEDLLRYSKLYRLGLGHNQIR-MIEN 234

Query: 690 KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDIL 749
            S              L+ L                                        
Sbjct: 235 GSLS--------FLPTLRELH--------------------------------------- 247

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-------CLGNLTNLESLDL 802
               L +N+    +P  + +LK LQV+ L  NN+   +                   + L
Sbjct: 248 ----LDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISL 301

Query: 803 SNNN 806
            NN 
Sbjct: 302 FNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 72.0 bits (177), Expect = 1e-13
 Identities = 39/204 (19%), Positives = 74/204 (36%), Gaps = 20/204 (9%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNL 178
                  L ++  + +  N  ++S       +  +L+YL +S +     IP ++ E   L
Sbjct: 139 PKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKL-TGIPKDLPE--TL 195

Query: 179 VSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLH 238
             L L  N    +E         + + S L  L LG+  IR     +L+ L +L  L L 
Sbjct: 196 NELHLDHNKIQAIE------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLD 249

Query: 239 SCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI-------GNLHSLKKLDLSINNLS 291
           +  L  R+ + L +L  L  + L  N +  ++ V+                + L  N + 
Sbjct: 250 NNKLS-RVPAGLPDLKLLQVVYLHTNNI-TKVGVNDFCPVGFGVKRAYYNGISLFNNPVP 307

Query: 292 GEL--PTSIQNLVSLEELDLSFNK 313
                P + + +     +     K
Sbjct: 308 YWEVQPATFRCVTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.0 bits (120), Expect = 2e-06
 Identities = 35/214 (16%), Positives = 65/214 (30%), Gaps = 43/214 (20%)

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
              LD+ +N I ++       L +L  L+L +NK   I    +      KL+ + +S N 
Sbjct: 56  TTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKI--HEKAFSPLRKLQKLYISKNH 113

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
              ++P               S L  L                     +  N   ++   
Sbjct: 114 LV-EIPPNLP-----------SSLVEL--------------------RIHDNRIRKVPKG 141

Query: 743 --DKVPDILTSIILSSNRF-DGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLES 799
               + + +  I +  N   +        +   L  L +    L   IP        L  
Sbjct: 142 VFSGLRN-MNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNE 197

Query: 800 LDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
           L L +N  +  I  + L+  + L    +  N + 
Sbjct: 198 LHLDHNK-IQAIELEDLLRYSKLYRLGLGHNQIR 230

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 45.4 bits (108), Expect = 5e-05
 Identities = 21/88 (23%), Positives = 34/88 (38%), Gaps = 3/88 (3%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +    T + L +N    +       L+ L  L L NN +          L  L+ L +S 
Sbjct: 52  ISPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISK 111

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLT 832
           N+ L +IP  L   + L    + DN + 
Sbjct: 112 NH-LVEIPPNL--PSSLVELRIHDNRIR 136

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 84.6 bits (210), Expect = 7e-19
 Identities = 33/173 (19%), Positives = 69/173 (39%), Gaps = 15/173 (8%)

Query: 171 EILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLS 230
              ++ +L  + L+  +   L          +E   N++ L +  +   +  P  ++ LS
Sbjct: 39  TEAQMNSLTYITLANINVTDLTG--------IEYAHNIKDLTINNIHATNYNP--ISGLS 88

Query: 231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNL 290
           +L  L +    +      +L  L+ L  LD+S +     +   I  L  +  +DLS N  
Sbjct: 89  NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGA 148

Query: 291 SGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE 343
             ++   ++ L  L+ L++ F+ +         I +F +L  L   S    G+
Sbjct: 149 ITDI-MPLKTLPELKSLNIQFDGVHDYRG----IEDFPKLNQLYAFSQTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.9 bits (208), Expect = 1e-18
 Identities = 28/173 (16%), Positives = 67/173 (38%), Gaps = 12/173 (6%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
                L+  L  +       ++   ++SL  + L+  N++    T I+   ++++L ++ 
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDL--TGIEYAHNIKDLTINN 75

Query: 312 NKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371
              +   P    I   + L+ L       + +   ++  L SL +L I        I + 
Sbjct: 76  IHATNYNP----ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

Query: 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT 424
           +  L ++ ++DLS N     +     L +L  L+ L++  + +     +    
Sbjct: 132 INTLPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDYRGIEDFP 181

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 83.1 bits (206), Expect = 2e-18
 Identities = 39/186 (20%), Positives = 76/186 (40%), Gaps = 15/186 (8%)

Query: 132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGL 191
           LN       ++ I      ++ L+Y+ L++ +      + I    N+  L ++       
Sbjct: 26  LNGLLGQSSTANITEA--QMNSLTYITLANINV--TDLTGIEYAHNIKDLTINNI----- 76

Query: 192 ELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLG 251
                N+  +   LSNLE L +    + S    NL+ L+SLT L +        I + + 
Sbjct: 77  --HATNYNPI-SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKIN 133

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
            L K+  +DLS N  + ++   +  L  LK L++  + +       I++   L +L    
Sbjct: 134 TLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD--YRGIEDFPKLNQLYAFS 190

Query: 312 NKLSGE 317
             + G+
Sbjct: 191 QTIGGK 196

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 78.1 bits (193), Expect = 1e-16
 Identities = 31/186 (16%), Positives = 72/186 (38%), Gaps = 10/186 (5%)

Query: 182 DLSLNSGYGLELQKPNFANL-VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC 240
           D +  +     L + + AN+   ++++L  + L  +++       +    ++  L++++ 
Sbjct: 19  DSTFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNI 76

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQN 300
                  + +  LS L  L +   ++  +   ++  L SL  LD+S +     + T I  
Sbjct: 77  HATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINT 134

Query: 301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
           L  +  +DLS+N    +      +    +L+SL+   +         I +   L  L   
Sbjct: 135 LPKVNSIDLSYNGAITDIM---PLKTLPELKSLNIQFDGVHDY--RGIEDFPKLNQLYAF 189

Query: 361 RCNFSG 366
                G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 61.1 bits (149), Expect = 9e-11
 Identities = 16/84 (19%), Positives = 35/84 (41%), Gaps = 1/84 (1%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L  + +           +++ L  L +L++ ++     I + +  L  + S+DLS N  +
Sbjct: 90  LERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAI 149

Query: 809 GQIPQQLVELTFLEFFNVSDNYLT 832
             I   L  L  L+  N+  + + 
Sbjct: 150 TDI-MPLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.1 bits (136), Expect = 5e-09
 Identities = 30/152 (19%), Positives = 59/152 (38%), Gaps = 5/152 (3%)

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
           L  + L++ N+     +  +  +  L  NN       + +  L +LE L +   +++   
Sbjct: 46  LTYITLANINVTDLTGIEYAHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDK 104

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
              L   +  L++LD+  +    +I        ++  IDLS+N     I   L    +L+
Sbjct: 105 IPNLSGLT-SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELK 162

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
            L+I  + + D     +   P L  L   S  
Sbjct: 163 SLNIQFDGVHDY--RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 6e-09
 Identities = 16/81 (19%), Positives = 35/81 (43%), Gaps = 2/81 (2%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           +  + +++       P  I+ L  L+ L +   ++       L  LT+L  LD+S++   
Sbjct: 68  IKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD 125

Query: 809 GQIPQQLVELTFLEFFNVSDN 829
             I  ++  L  +   ++S N
Sbjct: 126 DSILTKINTLPKVNSIDLSYN 146

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.4 bits (134), Expect = 9e-09
 Identities = 23/139 (16%), Positives = 51/139 (36%), Gaps = 8/139 (5%)

Query: 546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
           +++SL  + L++ N++ L    +      +  L +   +   T  N     S L  + + 
Sbjct: 42  QMNSLTYITLANINVTDLTG--IEYAH-NIKDLTINNIHA--TNYNPISGLSNLERLRIM 96

Query: 606 HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665
                     +L   + L  LDI  +   D   + + TLP +  + L  N     I +  
Sbjct: 97  GKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNG---AITDIM 153

Query: 666 IDCGFSKLRIIDLSNNRFT 684
                 +L+ +++  +   
Sbjct: 154 PLKTLPELKSLNIQFDGVH 172

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 31/135 (22%), Positives = 60/135 (44%), Gaps = 14/135 (10%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L ++N        + + +  L +LE L +   D  S +IP+ +  L+ L+ L++SHS+ 
Sbjct: 70  DLTINNI----HATNYNPISGLSNLERLRIMGKDVTSDKIPN-LSGLTSLTLLDISHSAH 124

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
              I ++I  L  + S+DLS N          +   L + L  L++L++ +  +      
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNG------AITDIMPL-KTLPELKSLNIQFDGVHDYRG- 176

Query: 225 NLANLSSLTFLSLHS 239
            + +   L  L   S
Sbjct: 177 -IEDFPKLNQLYAFS 190

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 54.6 bits (132), Expect = 2e-08
 Identities = 24/190 (12%), Positives = 52/190 (27%), Gaps = 63/190 (33%)

Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID--CGFSKLRII 676
               ++ L I +    +  P  +  L NL  L +        +   +I    G + L ++
Sbjct: 64  YAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKD----VTSDKIPNLSGLTSLTLL 117

Query: 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNK 736
           D+S++     + +K         I     +  +                     L  N  
Sbjct: 118 DISHSAHDDSILTK---------INTLPKVNSI--------------------DLSYNGA 148

Query: 737 GQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 796
                       +T I              +  L  L+ LN+  + +  +    + +   
Sbjct: 149 ------------ITDI------------MPLKTLPELKSLNIQFDGVHDYRG--IEDFPK 182

Query: 797 LESLDLSNNN 806
           L  L   +  
Sbjct: 183 LNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 19/90 (21%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           LT I L++     +  T I     ++ L ++N +      + +  L+NLE L +   +  
Sbjct: 46  LTYITLANINVTDL--TGIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVT 101

Query: 809 GQIPQQLVELTFLEFFNVSDNYLTGPIPQG 838
                 L  LT L   ++S +     I   
Sbjct: 102 SDKIPNLSGLTSLTLLDISHSAHDDSILTK 131

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 43.4 bits (103), Expect = 8e-05
 Identities = 23/215 (10%), Positives = 70/215 (32%), Gaps = 40/215 (18%)

Query: 350 NLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSL 409
             ++     +G+ + +     +   +  L  + L+  +      +++      N++ L++
Sbjct: 21  TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVTDLTGIEYA----HNIKDLTI 73

Query: 410 SSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHGKIPS 468
           ++   +    ++  +       + +   ++  +    L     L LLD+S +     I +
Sbjct: 74  NNIHATNYNPISGLS---NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILT 130

Query: 469 WLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN 528
            +       +++++LS+N        L  LP     L +L++  +               
Sbjct: 131 KINT--LPKVNSIDLSYNGAITDIMPLKTLPE----LKSLNIQFDG-------------- 170

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
                   + +    +     L  L      + G 
Sbjct: 171 --------VHDY-RGIEDFPKLNQLYAFSQTIGGK 196

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 87.1 bits (216), Expect = 2e-18
 Identities = 57/282 (20%), Positives = 118/282 (41%), Gaps = 25/282 (8%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFAN 200
           + IPS +     +  L+LS++     I +  L+  VNL +L L+ N    +E       +
Sbjct: 44  NSIPSGL--TEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINTIE------ED 94

Query: 201 LVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL-GNLSKLLHL 259
               L +LE LDL Y  + +        LSSLTFL+L     +   ++SL  +L+KL  L
Sbjct: 95  SFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQIL 154

Query: 260 DLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF 318
            +   +   ++       L  L++L++  ++L    P S++++ ++  L L   +     
Sbjct: 155 RVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LL 213

Query: 319 PWSIVIGNFTQLQSLDFTSNKFSGELHASI--------GNLRSLEVLAIGRCNFSGRIPS 370
              I +   + ++ L+           + +            +   + I   +   ++  
Sbjct: 214 L-EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMK 271

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
            L  ++ L+ L+ S+N  +   +  F    L +L+ + L +N
Sbjct: 272 LLNQISGLLELEFSRNQLKSVPDGIFD--RLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 84.4 bits (209), Expect = 1e-17
 Identities = 53/271 (19%), Positives = 100/271 (36%), Gaps = 30/271 (11%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LV 176
           S+S L + V+L+ L L  N    + I  +   +L  L +L+LS++     + S   + L 
Sbjct: 68  SNSDLQRCVNLQALVLTSNGI--NTIEEDSFSSLGSLEHLDLSYNY-LSNLSSSWFKPLS 124

Query: 177 NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN-LANLSSLTFL 235
           +L  L+L  N       +     +L   L+ L+ L +G +   + I     A L+ L  L
Sbjct: 125 SLTFLNLLGN-----PYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP 295
            + +  LQ     SL ++  + HL L + + +  L + +    S++ L+L   +L     
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHF 239

Query: 296 TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE 355
           + +             N L                +++  T      ++   +  +  L 
Sbjct: 240 SELSTGE--------TNSLI----------KKFTFRNVKITDESLF-QVMKLLNQISGLL 280

Query: 356 VLAIGRCNFSGRIPSSLRNLTQLITLDLSQN 386
            L   R             LT L  + L  N
Sbjct: 281 ELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 4e-16
 Identities = 64/356 (17%), Positives = 103/356 (28%), Gaps = 96/356 (26%)

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLS 511
           +  LDLS+NRI   I +  L     NL AL L+ N +   ++           L  LDLS
Sbjct: 54  VKSLDLSNNRIT-YISNSDLQRCV-NLQALVLTSNGINTIEEDS---FSSLGSLEHLDLS 108

Query: 512 SNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF 571
            N L   L                      SW   L SL  L L  N    L    L S 
Sbjct: 109 YNYLSN-LS--------------------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSH 147

Query: 572 SDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631
             KL IL +   + F  I                         +     + LE L+I  +
Sbjct: 148 LTKLQILRVGNMDTFTKIQ-----------------------RKDFAGLTFLEELEIDAS 184

Query: 632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKS 691
            ++   P  L ++ N++ LIL   +   +          S +  ++L +           
Sbjct: 185 DLQSYEPKSLKSIQNVSHLILHMKQHILL--LEIFVDVTSSVECLELRDTDL-------- 234

Query: 692 FLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTS 751
                     +T     L    +                                    +
Sbjct: 235 ----------DTFHFSELSTGETNSLIKKFT--------------------------FRN 258

Query: 752 IILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
           + ++       +   +  + GL  L    N L+         LT+L+ + L  N +
Sbjct: 259 VKITDESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 72.5 bits (178), Expect = 1e-13
 Identities = 55/302 (18%), Positives = 98/302 (32%), Gaps = 68/302 (22%)

Query: 369 PSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQK 428
            S L+    L  L L+ N    T+E D    SL +LE L LS N+LS L+          
Sbjct: 69  NSDLQRCVNLQALVLTSNGIN-TIEED-SFSSLGSLEHLDLSYNYLSNLS---------- 116

Query: 429 FTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLL 488
                          ++ K    L  L+L  N     +    L      L  L + +   
Sbjct: 117 --------------SSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNM-- 159

Query: 489 TGFDQQLVVLPGGK----RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL 544
                    +         FL  L++ +++LQ                        P  L
Sbjct: 160 ----DTFTKIQRKDFAGLTFLEELEIDASDLQS-YE--------------------PKSL 194

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN--------FFGTIPNTFMKE 596
             + ++  L+L       LL   +   S  +  L+LR  +              N+ +K+
Sbjct: 195 KSIQNVSHLILHMKQHILLLEIFVDVTS-SVECLELRDTDLDTFHFSELSTGETNSLIKK 253

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
                + ++      ++ + L   S L  L+   NQ++ +       L +L  + L +N 
Sbjct: 254 FTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNP 312

Query: 657 FY 658
           + 
Sbjct: 313 WD 314

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 3e-13
 Identities = 40/201 (19%), Positives = 76/201 (37%), Gaps = 20/201 (9%)

Query: 125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDL 183
            L  L +LNL  N +K+    S   +L++L  L + +   F +I  +    L  L  L++
Sbjct: 122 PLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEI 181

Query: 184 SLNSGYGL-ELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHS--- 239
             +    L   +  +  ++     N+  L L        +   +   SS+  L L     
Sbjct: 182 DASD---LQSYEPKSLKSI----QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDL 234

Query: 240 -----CGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGEL 294
                  L     +SL       ++ ++   L  ++   +  +  L +L+ S N L   +
Sbjct: 235 DTFHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-V 292

Query: 295 PTSI-QNLVSLEELDLSFNKL 314
           P  I   L SL+++ L  N  
Sbjct: 293 PDGIFDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 64.0 bits (156), Expect = 7e-11
 Identities = 42/254 (16%), Positives = 87/254 (34%), Gaps = 22/254 (8%)

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
           DLS+N         L  C  L+ L +  N I  I      +L +L  L L  N    +  
Sbjct: 58  DLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNL-- 115

Query: 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSD 722
                   S L  ++L  N +     +  F     ++I+   ++      I  K    + 
Sbjct: 116 SSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTK-IQRK--DFAG 172

Query: 723 EVATYDYSLKMNNKGQIMTY--DKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN 780
                +  +  ++           + + ++ +IL   +   ++   +     ++ L L +
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQN-VSHLILHMKQHILLLEIFVDVTSSVECLELRD 231

Query: 781 NNLQGHIPSCL--------GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
            +L     S L               ++ +++ + L Q+ + L +++ L     S N L 
Sbjct: 232 TDLDTFHFSELSTGETNSLIKKFTFRNVKITDES-LFQVMKLLNQISGLLELEFSRNQLK 290

Query: 833 GPIPQGRQFATFDN 846
             +P G     FD 
Sbjct: 291 S-VPDG----IFDR 299

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 39/197 (19%), Positives = 75/197 (38%), Gaps = 22/197 (11%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII-NLSRLSYLNLSHSS 163
            L+L  +    ++  +S    L  L+ L +       ++I  +    L+ L  L +  S 
Sbjct: 128 FLNLLGNPY-KTLGETSLFSHLTKLQILRVGNM-DTFTKIQRKDFAGLTFLEELEIDASD 185

Query: 164 FFGQIPSEILE-LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGY------- 215
                  + L+ + N+  L L +     L          V+  S++E L+L         
Sbjct: 186 L-QSYEPKSLKSIQNVSHLILHMKQHILLL------EIFVDVTSSVECLELRDTDLDTFH 238

Query: 216 -VSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI 274
              + +   ++L    +   + +    L  ++   L  +S LL L+ S N+L   +P  I
Sbjct: 239 FSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKS-VPDGI 296

Query: 275 -GNLHSLKKLDLSINNL 290
              L SL+K+ L  N  
Sbjct: 297 FDRLTSLQKIWLHTNPW 313

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 46.3 bits (110), Expect = 3e-05
 Identities = 25/99 (25%), Positives = 43/99 (43%), Gaps = 3/99 (3%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           + + + S+ LS+NR   +  + +     LQ L L +N +         +L +LE LDLS 
Sbjct: 50  LTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109

Query: 805 NNFLGQIPQQL-VELTFLEFFNVSDNYLTGPIPQGRQFA 842
           N  L  +       L+ L F N+  N     + +   F+
Sbjct: 110 NY-LSNLSSSWFKPLSSLTFLNLLGNPYKT-LGETSLFS 146

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 6e-17
 Identities = 57/258 (22%), Positives = 101/258 (39%), Gaps = 33/258 (12%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
           + +K+    S    ++  + +   L  +  L+       + E    +  L+ L  L L  
Sbjct: 20  NAIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKD 72

Query: 162 SSFFGQI--PSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIR 219
           +    QI   + +  L  +  L+LS N          N + +   L +++TLDL    I 
Sbjct: 73  N----QITDLAPLKNLTKITELELSGN-------PLKNVSAI-AGLQSIKTLDLTSTQIT 120

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
              P  LA LS+L  L L    +     S L  L+ L +L +   ++    P  + NL  
Sbjct: 121 DVTP--LAGLSNLQVLYLDLNQI--TNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSK 174

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
           L  L    N +S   P  + +L +L E+ L  N++S   P    + N + L  +  T+  
Sbjct: 175 LTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP----LANTSNLFIVTLTNQT 228

Query: 340 FSGELHASIGNLRSLEVL 357
            + +      NL    V+
Sbjct: 229 ITNQPVFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 81.7 bits (202), Expect = 7e-17
 Identities = 51/273 (18%), Positives = 101/273 (36%), Gaps = 27/273 (9%)

Query: 116 SINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILEL 175
           +IN       L +   +    ++           +L  ++ L+   +         +  L
Sbjct: 8   AINVIFPDPALANAIKIAAGKSNVTD---TVTQADLDGITTLSAFGTGV--TTIEGVQYL 62

Query: 176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFL 235
            NL+ L+L  N       Q  + A L + L+ +  L+L    +++     +A L S+  L
Sbjct: 63  NNLIGLELKDN-------QITDLAPL-KNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP 295
            L S  +     + L  LS L  L L LN+ +  +   +  L +L+ L +    +S    
Sbjct: 113 DLTSTQITD--VTPLAGLSNLQVLYLDLNQ-ITNIS-PLAGLTNLQYLSIGNAQVSDL-- 166

Query: 296 TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE 355
           T + NL  L  L    NK+S   P    + +   L  +   +N+ S    + + N  +L 
Sbjct: 167 TPLANLSKLTTLKADDNKISDISP----LASLPNLIEVHLKNNQISDV--SPLANTSNLF 220

Query: 356 VLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSY 388
           ++ +     + +      NL     +     + 
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 80.5 bits (199), Expect = 2e-16
 Identities = 52/295 (17%), Positives = 107/295 (36%), Gaps = 31/295 (10%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
                L+  + +    + +     V+  +L  +  L      ++      +Q L +L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTT--IEGVQYLNNLIGL 68

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
           +L  N+++   P    + N T++  L+ + N       ++I  L+S++ L +     +  
Sbjct: 69  ELKDNQITDLAP----LKNLTKITELELSGNPLKNV--SAIAGLQSIKTLDLTSTQITD- 121

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
             + L  L+ L  L L  N       L      L NL+ LS+ +  +S LT + + +   
Sbjct: 122 -VTPLAGLSNLQVLYLDLNQITNISPLA----GLTNLQYLSIGNAQVSDLTPLANLSKLT 176

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
                     N I   + L +  +L+ + L +N+I    P         NL  + L++  
Sbjct: 177 TLKA----DDNKISDISPLASLPNLIEVHLKNNQISDVSPLANT----SNLFIVTLTNQT 228

Query: 488 LTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS 542
           +T         P      L +        G    P + + N   ++ +    + S
Sbjct: 229 ITN-------QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTS 276

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.1 bits (159), Expect = 2e-11
 Identities = 52/302 (17%), Positives = 100/302 (33%), Gaps = 74/302 (24%)

Query: 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP 590
           ++  + I  I      L +   +    +N++  +        D ++ L         TI 
Sbjct: 3   ITQPTAINVIFP-DPALANAIKIAAGKSNVTDTVT--QADL-DGITTLSAFGTGV-TTIE 57

Query: 591 NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVL 650
                 + L  ++L  N     +   L N +K+  L++  N ++++    +  L ++  L
Sbjct: 58  G-VQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNPLKNVSA--IAGLQSIKTL 112

Query: 651 ILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ 710
            L S +    I +     G S L+++ L  N                 +I N S L  L 
Sbjct: 113 DLTSTQ----ITDVTPLAGLSNLQVLYLDLN-----------------QITNISPLAGLT 151

Query: 711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770
           +                                     L  + + + +   + P  +ANL
Sbjct: 152 N-------------------------------------LQYLSIGNAQVSDLTP--LANL 172

Query: 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY 830
             L  L  D+N +     S L +L NL  + L NN      P  L   + L    +++  
Sbjct: 173 SKLTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQT 228

Query: 831 LT 832
           +T
Sbjct: 229 IT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 55.8 bits (135), Expect = 2e-08
 Identities = 46/213 (21%), Positives = 74/213 (34%), Gaps = 19/213 (8%)

Query: 472 DPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV 531
           DP+  N   +    + +T    Q          + TL      +     V     +  L 
Sbjct: 15  DPALANAIKIAAGKSNVTDTVTQ-----ADLDGITTLSAFGTGVTTIEGVQYLNNLIGLE 69

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN 591
             ++ I ++   L  L  +  L LS N L  +    +      +  LDL +     T   
Sbjct: 70  LKDNQITDLAP-LKNLTKITELELSGNPLKNVSA--IAGLQ-SIKTLDLTSTQI--TDVT 123

Query: 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLI 651
                S L ++ L  N  Q      L   + L++L IG+ Q+ D+ P  L  L  LT L 
Sbjct: 124 PLAGLSNLQVLYLDLN--QITNISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLK 179

Query: 652 LQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
              NK    I +         L  + L NN+ +
Sbjct: 180 ADDNK----ISDISPLASLPNLIEVHLKNNQIS 208

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 77.0 bits (190), Expect = 2e-15
 Identities = 51/244 (20%), Positives = 82/244 (33%), Gaps = 29/244 (11%)

Query: 116 SINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPS--EIL 173
            I    S          NL                L+ +  +  ++S     I S   I 
Sbjct: 13  PIKQIFSDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNS----DIKSVQGIQ 65

Query: 174 ELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLT 233
            L N+  L L+ N       +  +   L   L NL  L L    ++     +L +L  L 
Sbjct: 66  YLPNVTKLFLNGN-------KLTDIKPL-ANLKNLGWLFLDENKVKDL--SSLKDLKKLK 115

Query: 234 FLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGE 293
            LSL   G+     + L +L +L  L L  N++       +  L  L  L L  N +S +
Sbjct: 116 SLSLEHNGI--SDINGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS-D 170

Query: 294 LPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS 353
           +   +  L  L+ L LS N +S        +     L  L+  S +   +      NL  
Sbjct: 171 IV-PLAGLTKLQNLYLSKNHISDLRA----LAGLKNLDVLELFSQECLNKPINHQSNLVV 225

Query: 354 LEVL 357
              +
Sbjct: 226 PNTV 229

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 64.7 bits (158), Expect = 2e-11
 Identities = 50/260 (19%), Positives = 92/260 (35%), Gaps = 29/260 (11%)

Query: 276 NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDF 335
                 K +L   +++  +      L S++++  + + +         I     +  L  
Sbjct: 22  AFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG----IQYLPNVTKLFL 75

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELD 395
             NK +      + NL++L  L +        + SSL++L +L +L L  N      +++
Sbjct: 76  NGNKLTDI--KPLANLKNLGWLFLDENKVK-DL-SSLKDLKKLKSLSLEHNGIS---DIN 128

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLL 455
             LV L  LE L L +N    +T +T  +   K   + L    + +    L     L  L
Sbjct: 129 G-LVHLPQLESLYLGNN---KITDITVLSRLTKLDTLSLEDNQISDIVP-LAGLTKLQNL 183

Query: 456 DLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNL 515
            LS N I        L    +NL  L L          + +  P   +  L +  +  N 
Sbjct: 184 YLSKNHISDLRALAGL----KNLDVLELFSQ-------ECLNKPINHQSNLVVPNTVKNT 232

Query: 516 QGPLPVPPSRTVNYLVSNNS 535
            G L  P   + +      +
Sbjct: 233 DGSLVTPEIISDDGDYEKPN 252

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 63.1 bits (154), Expect = 7e-11
 Identities = 50/229 (21%), Positives = 88/229 (38%), Gaps = 33/229 (14%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
             +K +L       S+  + +  +L  ++ +    +D KS +    I  L  ++ L L+ 
Sbjct: 25  ETIKDNLKKK----SVTDAVTQNELNSIDQIIANNSDIKSVQ---GIQYLPNVTKLFLNG 77

Query: 162 SSFFGQIP--SEILELVNLVSLDLS------------LNSGYGLELQKPNFANL--VEKL 205
           +    ++     +  L NL  L L             L     L L+    +++  +  L
Sbjct: 78  N----KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHL 133

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
             LE+L LG   I  T    L+ L+ L  LSL    +       L  L+KL +L LS N 
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKNH 189

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314
           +  +L  ++  L +L  L+L       +      NLV    +  +   L
Sbjct: 190 IS-DLR-ALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 62.4 bits (152), Expect = 1e-10
 Identities = 47/261 (18%), Positives = 88/261 (33%), Gaps = 46/261 (17%)

Query: 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI 633
           +    +L+  +    +    +    +  I  +++  +  +   +     +  L +  N++
Sbjct: 25  ETIKDNLKKKSVTDAVTQNELN--SIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKL 80

Query: 634 RDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL 693
            DI P  L  L NL  L L  NK    +++        KL+ + L +N  +         
Sbjct: 81  TDIKP--LANLKNLGWLFLDENK----VKDLSSLKDLKKLKSLSLEHNGIS--------- 125

Query: 694 CWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII 753
                 I     L  L+ +                  L  N    I    ++   L ++ 
Sbjct: 126 -----DINGLVHLPQLESL-----------------YLGNNKITDITVLSRLTK-LDTLS 162

Query: 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813
           L  N+   ++P  +A L  LQ L L  N++       L  L NL+ L+L +   L +   
Sbjct: 163 LEDNQISDIVP--LAGLTKLQNLYLSKNHISD--LRALAGLKNLDVLELFSQECLNKPIN 218

Query: 814 QLVELTFLEFFNVSDNYLTGP 834
               L        +D  L  P
Sbjct: 219 HQSNLVVPNTVKNTDGSLVTP 239

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 49/215 (22%), Positives = 80/215 (37%), Gaps = 23/215 (10%)

Query: 472 DPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ--GPLPVPPSRTVNY 529
           D +       NL    +T      V        +  +  ++++++    +   P+ T  +
Sbjct: 20  DDAFAETIKDNLKKKSVT----DAVTQNELNS-IDQIIANNSDIKSVQGIQYLPNVTKLF 74

Query: 530 LVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI 589
           L  N   + +I   L  L +L  L L  N +  L    L     KL  L L  N    + 
Sbjct: 75  LNGNK--LTDIKP-LANLKNLGWLFLDENKVKDLSS--LKDLK-KLKSLSLEHNGI--SD 126

Query: 590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTV 649
            N  +   +L  + L +N  +      L   +KL+ L + DNQI DI P  L  L  L  
Sbjct: 127 INGLVHLPQLESLYLGNN--KITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQN 182

Query: 650 LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
           L L  N     I + R   G   L +++L +    
Sbjct: 183 LYLSKNH----ISDLRALAGLKNLDVLELFSQECL 213

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 5e-07
 Identities = 45/288 (15%), Positives = 89/288 (30%), Gaps = 69/288 (23%)

Query: 370 SSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF 429
            S     + I  +L + S    +  +     L +++ +  +++ +  +            
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQN----ELNSIDQIIANNSDIKSVQ----------- 62

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
                           ++   ++  L L+ N++   I       + +NL  L L  N + 
Sbjct: 63  ---------------GIQYLPNVTKLFLNGNKLT-DIKP---LANLKNLGWLFLDENKVK 103

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS 549
                L  L   K+ L +L L  N                       I +I   L  L  
Sbjct: 104 ----DLSSLKDLKK-LKSLSLEHNG----------------------ISDING-LVHLPQ 135

Query: 550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLF 609
           LE L L +N ++ +    L   + KL  L L  N    +        ++L  + LS N  
Sbjct: 136 LESLYLGNNKITDITV--LSRLT-KLDTLSLEDNQI--SDIVPLAGLTKLQNLYLSKN-- 188

Query: 610 QGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF 657
                R+L     L+ L++   +  +   +    L     +       
Sbjct: 189 HISDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 236

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 51.2 bits (123), Expect = 6e-07
 Identities = 52/291 (17%), Positives = 98/291 (33%), Gaps = 75/291 (25%)

Query: 544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID 603
             +L+S++ ++ +++++  +    +      ++ L L   N    I         LG + 
Sbjct: 42  QNELNSIDQIIANNSDIKSVQG--IQYLP-NVTKLFL-NGNKLTDIKP-LANLKNLGWLF 96

Query: 604 LSHNLFQGRIPR--SLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           L  N    ++    SL +  KL+ L +  N I DI    L  LP L  L L +NK    I
Sbjct: 97  LDEN----KVKDLSSLKDLKKLKSLSLEHNGISDING--LVHLPQLESLYLGNNK----I 146

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
            +  +    +KL  + L +N                 +I +   L  L            
Sbjct: 147 TDITVLSRLTKLDTLSLEDN-----------------QISDIVPLAGLTK---------- 179

Query: 722 DEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNN 781
                                      L ++ LS N    +   ++A LK L VL L + 
Sbjct: 180 ---------------------------LQNLYLSKNHISDL--RALAGLKNLDVLELFSQ 210

Query: 782 NLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
                  +   NL    ++  ++ + +   P+ + +    E  NV  +   
Sbjct: 211 ECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHLPE 259

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 52/212 (24%), Positives = 87/212 (41%), Gaps = 10/212 (4%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL-GNLSKLLHLDLSLN 264
            + + LDL +  +R    ++  +   L  L L  C +Q  I+     +LS L  L L+ N
Sbjct: 28  FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGN 86

Query: 265 ELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323
             +  L +     L SL+KL     NL+      I +L +L+EL+++ N +   F     
Sbjct: 87  -PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEY 144

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG---RCNFSGRIPSSLRNLTQLIT 380
             N T L+ LD +SNK        +  L  + +L +      N    I        +L  
Sbjct: 145 FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLKE 204

Query: 381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           L L  N  +   +  F    L +L+ + L +N
Sbjct: 205 LALDTNQLKSVPDGIF--DRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 71.5 bits (176), Expect = 8e-14
 Identities = 53/215 (24%), Positives = 86/215 (40%), Gaps = 16/215 (7%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDF 335
           S K LDLS N L      S  +   L+ LDLS  ++      +I  G +   + L +L  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLIL 83

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSL-RNLTQLITLDLSQNSYRGTMEL 394
           T N        +   L SL+ L     N +  + +    +L  L  L+++ N  + + +L
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQ-SFKL 141

Query: 395 DFLLVSLKNLEVLSLSSNWL-SLLTKVTSNTTSQKFTVVGLR-SCN-LIEFPNFLKNQHH 451
                +L NLE L LSSN + S+               + L  S N +         +  
Sbjct: 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIR 201

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
           L  L L +N++   +P  + D  T +L  + L  N
Sbjct: 202 LKELALDTNQLK-SVPDGIFDRLT-SLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 53/212 (25%), Positives = 83/212 (39%), Gaps = 29/212 (13%)

Query: 119 SSSSLFKLVHLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSH---SSFFGQIPSEILE 174
            S S F    L+ L+L+  + ++  I      +LS LS L L+     S    +      
Sbjct: 44  GSYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQS----LALGAFS 97

Query: 175 -LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSL 232
            L +L  L     +   LE         +  L  L+ L++ +  I+S       +NL++L
Sbjct: 98  GLSSLQKLVAVETNLASLE------NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNL 151

Query: 233 TFLSLHSCGLQGRIQSSLGNLSKL----LHLDLSLNELLGELPVSIGNLHSLKKLDLSIN 288
             L L S  +Q    + L  L ++    L LDLSLN  +  +         LK+L L  N
Sbjct: 152 EHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP-MNFIQPGAFKEIRLKELALDTN 210

Query: 289 NLSGELPTSIQNLVSLEELDLSFNKLSGEFPW 320
            L          L SL+++ L  N      PW
Sbjct: 211 QLKSVPDGIFDRLTSLQKIWLHTN------PW 236

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 66.5 bits (163), Expect = 4e-12
 Identities = 51/192 (26%), Positives = 80/192 (41%), Gaps = 22/192 (11%)

Query: 175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLT 233
              L  LDLS      +E          + LS+L TL L    I+S +     + LSSL 
Sbjct: 51  FPELQVLDLSRCEIQTIE------DGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQ 103

Query: 234 FLSLHSCGLQGRIQSSL-GNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLSINNLS 291
            L      L   +++   G+L  L  L+++ N +   +LP    NL +L+ LDLS N + 
Sbjct: 104 KLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ 162

Query: 292 GELPTSIQNLVSLE----ELDLSFNKLSGEFPWSIVIGNFT--QLQSLDFTSNKFSGELH 345
               T ++ L  +      LDLS N ++      I  G F   +L+ L   +N+      
Sbjct: 163 SIYCTDLRVLHQMPLLNLSLDLSLNPMN-----FIQPGAFKEIRLKELALDTNQLKSVPD 217

Query: 346 ASIGNLRSLEVL 357
                L SL+ +
Sbjct: 218 GIFDRLTSLQKI 229

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 65.8 bits (161), Expect = 7e-12
 Identities = 51/258 (19%), Positives = 82/258 (31%), Gaps = 53/258 (20%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHN 607
           S + L LS N L  L      SF  +L +LDL       TI    +   S L  + L+ N
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGN 86

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
             Q     +    S L+ L   +  +  +    +G L  L  L +  N        P   
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK-LPEYF 145

Query: 668 CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY 727
              + L  +DLS+N+    +                  L  +                  
Sbjct: 146 SNLTNLEHLDLSSNKIQ-SIYCTDL-----------RVLHQMP----------------- 176

Query: 728 DYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
                               +  S+ LS N  + + P +   ++ L+ L LD N L+   
Sbjct: 177 -------------------LLNLSLDLSLNPMNFIQPGAFKEIR-LKELALDTNQLKSVP 216

Query: 788 PSCLGNLTNLESLDLSNN 805
                 LT+L+ + L  N
Sbjct: 217 DGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 59.6 bits (145), Expect = 8e-10
 Identities = 46/216 (21%), Positives = 80/216 (37%), Gaps = 29/216 (13%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK----RFLLTLDL 510
           LDLS N +   + S+        L  L+LS         ++  +  G       L TL L
Sbjct: 33  LDLSFNPLR-HLGSYSFFSFP-ELQVLDLSRC-------EIQTIEDGAYQSLSHLSTLIL 83

Query: 511 SSNNLQ----GPLPVPPSRTVNYLVSNNSFIGEIPSWL-CKLDSLEILVLSHNNLSGLLP 565
           + N +Q    G      S      V  N  +  + ++    L +L+ L ++HN +     
Sbjct: 84  TGNPIQSLALGAFSGLSSLQKLVAVETN--LASLENFPIGHLKTLKELNVAHNLIQSF-- 139

Query: 566 RCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMI----DLSHNLFQGRIPRSLIN 619
           +    FS+   L  LDL +N              ++ ++    DLS N     I      
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198

Query: 620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
             +L+ L +  NQ++ +       L +L  + L +N
Sbjct: 199 EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 50.4 bits (121), Expect = 9e-07
 Identities = 44/232 (18%), Positives = 77/232 (33%), Gaps = 36/232 (15%)

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
           DLS N  +     S  +  +L+ LD+   +I+ I      +L +L+ LIL  N    +  
Sbjct: 34  DLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSL-- 91

Query: 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSD 722
                 G S L+ +          L +            +   LK L         +   
Sbjct: 92  ALGAFSGLSSLQKLVAVETNLA-SLENFPI--------GHLKTLKEL--------NV--- 131

Query: 723 EVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQV----LNL 778
                     + +      +  + + L  + LSSN+   +  T +  L  + +    L+L
Sbjct: 132 ------AHNLIQSFKLPEYFSNLTN-LEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 779 DNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDN 829
             N +   I         L+ L L  N  L  +P      LT L+   +  N
Sbjct: 185 SLNPMN-FIQPGAFKEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 41.5 bits (98), Expect = 7e-04
 Identities = 21/103 (20%), Positives = 39/103 (37%), Gaps = 14/103 (13%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L+++IL+ N    +   + + L  LQ L     NL       +G+L  L+ L++++N  +
Sbjct: 78  LSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNL-I 136

Query: 809 GQIPQ-----QLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
                      L  L  L   ++S N +   I           
Sbjct: 137 QSFKLPEYFSNLTNLEHL---DLSSNKIQS-IYCT----DLRV 171

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 71.7 bits (176), Expect = 1e-13
 Identities = 53/211 (25%), Positives = 73/211 (34%), Gaps = 40/211 (18%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            +   L L    + +     L   + LT L+L    L        G L  L  LDLS N+
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQ 88

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVI 324
            L  LP+    L +L  LD+S N L+  LP    + L  L+EL L  N+L      ++  
Sbjct: 89  -LQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELYLKGNELK-----TLPP 141

Query: 325 GNF---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
           G      +L+ L   +N            L  L                 L  L  L TL
Sbjct: 142 GLLTPTPKLEKLSLANNN-----------LTELP-------------AGLLNGLENLDTL 177

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
            L +NS     +  F       L    L  N
Sbjct: 178 LLQENSLYTIPKGFF---GSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 58/214 (27%), Positives = 88/214 (41%), Gaps = 40/214 (18%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
           +++   ++    ++ + +P +L      T L L    L     ++L   ++L  L+L   
Sbjct: 9   VASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRA 65

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
           EL  +L V  G L  L  LDLS N L   LP   Q L +L  LD+SFN+L+     S+ +
Sbjct: 66  EL-TKLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-----SLPL 117

Query: 325 GNF---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
           G      +LQ L    N+           L++L              P  L    +L  L
Sbjct: 118 GALRGLGELQELYLKGNE-----------LKTLP-------------PGLLTPTPKLEKL 153

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS 415
            L+ N    T     LL  L+NL+ L L  N L 
Sbjct: 154 SLANN--NLTELPAGLLNGLENLDTLLLQENSLY 185

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 63.6 bits (155), Expect = 4e-11
 Identities = 50/196 (25%), Positives = 72/196 (36%), Gaps = 21/196 (10%)

Query: 127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLN 186
                L+L+ N   +    + ++  +RL+ LNL  +            L  L +LDLS N
Sbjct: 31  KDTTILHLSENLLYTFS-LATLMPYTRLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHN 87

Query: 187 SGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLTFLSLHSCGLQGR 245
                  Q  +   L + L  L  LD+ +  + S +P      L  L  L L    L+  
Sbjct: 88  -------QLQSLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELYLKGNELKTL 139

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSL 304
               L    KL  L L+ N  L ELP  +   L +L  L L  N+L   +P        L
Sbjct: 140 PPGLLTPTPKLEKLSLANNN-LTELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLL 197

Query: 305 EELDLSFNKLSGEFPW 320
               L  N      PW
Sbjct: 198 PFAFLHGN------PW 207

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.8 bits (140), Expect = 4e-09
 Identities = 53/239 (22%), Positives = 79/239 (33%), Gaps = 45/239 (18%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
            ++  L ++     L   LP  +        L LS N L      ++     L +L+L  
Sbjct: 8   KVASHLEVNCDKRNL-TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 312 NKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371
            +L+ +     V G    L +LD + N+    L      L +L VL +     +     +
Sbjct: 65  AELT-KLQ---VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 372 LRNLTQLITLDLSQNSYRGTMELDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ 427
           LR L +L  L L  N      EL  L    L     LE LSL++N L+ L          
Sbjct: 120 LRGLGELQELYLKGN------ELKTLPPGLLTPTPKLEKLSLANNNLTELP--------- 164

Query: 428 KFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                             L    +L  L L  N ++  IP          L    L  N
Sbjct: 165 ---------------AGLLNGLENLDTLLLQENSLYT-IPKGFFGSH--LLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 57.0 bits (138), Expect = 7e-09
 Identities = 45/188 (23%), Positives = 68/188 (36%), Gaps = 31/188 (16%)

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
            L ++    NL     +PP                +P          IL LS N L    
Sbjct: 12  HLEVNCDKRNLTA---LPPD---------------LPK------DTTILHLSENLLYTFS 47

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
              L  ++ +L+ L+L       T          LG +DLSHN  Q  +P        L 
Sbjct: 48  LATLMPYT-RLTQLNLDRAEL--TKLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALT 103

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
            LD+  N++  +    L  L  L  L L+ N+   +   P +     KL  + L+NN  T
Sbjct: 104 VLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL--PPGLLTPTPKLEKLSLANNNLT 161

Query: 685 GKLPSKSF 692
            +LP+   
Sbjct: 162 -ELPAGLL 168

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 54.3 bits (131), Expect = 6e-08
 Identities = 51/227 (22%), Positives = 77/227 (33%), Gaps = 58/227 (25%)

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
            LS NL       +L+  ++L  L++   ++  +     GTLP L  L L  N+   +  
Sbjct: 37  HLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL--QVDGTLPVLGTLDLSHNQLQSL-- 92

Query: 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSD 722
            P +      L ++D+S NR T  LP  +             +L+ L             
Sbjct: 93  -PLLGQTLPALTVLDVSFNRLT-SLPLGAL--------RGLGELQEL------------- 129

Query: 723 EVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNN 782
                   LK N              L +  L                  L+ L+L NNN
Sbjct: 130 -------YLKGNE-------------LKT--LPPGLLTP--------TPKLEKLSLANNN 159

Query: 783 LQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           L       L  L NL++L L  N+ L  IP+       L F  +  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENS-LYTIPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 53.6 bits (129), Expect = 8e-08
 Identities = 54/292 (18%), Positives = 85/292 (29%), Gaps = 96/292 (32%)

Query: 297 SIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEV 356
            +  + S  E++     L+     ++          L  + N            L +   
Sbjct: 5   EVSKVASHLEVNCDKRNLT-----ALPPDLPKDTTILHLSENL-----------LYTFS- 47

Query: 357 LAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSL 416
                        ++L   T+L  L+L +              +L  L  L LS N L  
Sbjct: 48  ------------LATLMPYTRLTQLNLDRAELTKLQVDG----TLPVLGTLDLSHNQLQS 91

Query: 417 LTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQ 476
           L  +                               L +LD+S NR+   +P   L     
Sbjct: 92  LPLLGQTLP-------------------------ALTVLDVSFNRLT-SLPLGALRGLG- 124

Query: 477 NLSALNLSHNLLTGFDQQLVVLPGGK----RFLLTLDLSSNNLQGPLPVPPSRTVNYLVS 532
            L  L L  N       +L  LP G       L  L L++NNL               + 
Sbjct: 125 ELQELYLKGN-------ELKTLPPGLLTPTPKLEKLSLANNNLTE-------------LP 164

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF-SDKLSILDLRAN 583
                         L++L+ L+L  N+L   +P+  G F S  L    L  N
Sbjct: 165 AGLLN--------GLENLDTLLLQENSLYT-IPK--GFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 4e-07
 Identities = 58/229 (25%), Positives = 77/229 (33%), Gaps = 61/229 (26%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP--GGKRFLLTLDLSS 512
           L LS N +        L P T+ L+ LNL          +L  L   G    L TLDLS 
Sbjct: 36  LHLSENLL-YTFSLATLMPYTR-LTQLNLDRA-------ELTKLQVDGTLPVLGTLDLSH 86

Query: 513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS 572
           N LQ                       +P     L +L +L +S N L+ L     G+  
Sbjct: 87  NQLQ----------------------SLPLLGQTLPALTVLDVSFNRLTSLPL---GAL- 120

Query: 573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ 632
             L                       L  + L  N  +   P  L    KLE L + +N 
Sbjct: 121 RGLG---------------------ELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159

Query: 633 IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
           + ++    L  L NL  L+LQ N  Y I   P+   G   L    L  N
Sbjct: 160 LTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 46.3 bits (110), Expect = 2e-05
 Identities = 26/102 (25%), Positives = 41/102 (40%), Gaps = 14/102 (13%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L ++ LS N+    +P     L  L VL++  N L       L  L  L+ L L  N  L
Sbjct: 79  LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNE-L 136

Query: 809 GQIP----QQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
             +P        +L  L   ++++N LT  +P G      + 
Sbjct: 137 KTLPPGLLTPTPKLEKL---SLANNNLTE-LPAG----LLNG 170

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.4 bits (175), Expect = 3e-13
 Identities = 56/265 (21%), Positives = 91/265 (34%), Gaps = 32/265 (12%)

Query: 89  CSWDGVECSENT---------GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDF 139
           CS     C E+           + ++L    + L   +    +      LE + ++ ND 
Sbjct: 9   CSNRVFLCQESKVTEIPSDLPRNAIELRFVLTKL--RVIQKGAFSGFGDLEKIEISQNDV 66

Query: 140 KSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYGLELQK-PN 197
                     NL +L  + +  ++    I  E  + L NL  L +S        ++  P+
Sbjct: 67  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNT-----GIKHLPD 121

Query: 198 FANLVEKLSNLETLDLGYVSIRSTIPHN-LANLSS-LTFLSLHSCGLQGRIQSSLGNLSK 255
              +         LD+       TI  N    LS     L L+  G+Q  I +S  N ++
Sbjct: 122 VHKI--HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 256 LLHLDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNK 313
           L  L+LS N  L ELP  +         LD+S   +   LP+   +NL  L        K
Sbjct: 179 LDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK 237

Query: 314 LSGEFPWSIVIGNFTQLQSLDFTSN 338
              + P    +     L     T  
Sbjct: 238 ---KLPT---LEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 71.0 bits (174), Expect = 3e-13
 Identities = 36/210 (17%), Positives = 67/210 (31%), Gaps = 6/210 (2%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSS-LGNLSKLLHLDLSLN 264
            N   L      +R       +    L  + +    +   I++    NL KL  + +   
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 265 ELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV 323
             L  +      NL +L+ L +S   +         + +    LD+  N        +  
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 149

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLD 382
           +G   +   L    N    E+H S  N   L+ L +   N    +P+      +  + LD
Sbjct: 150 VGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           +S+              +LK L   S  + 
Sbjct: 209 ISRTRIHSLPSYGLE--NLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 63.3 bits (154), Expect = 1e-10
 Identities = 42/224 (18%), Positives = 84/224 (37%), Gaps = 12/224 (5%)

Query: 267 LGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN 326
           + E+P  +    +  +L   +  L      +      LE++++S N +        V  N
Sbjct: 21  VTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEAD-VFSN 77

Query: 327 FTQLQSLDFTSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLS 384
             +L  +          ++     NL +L+ L I        +P     +  Q + LD+ 
Sbjct: 78  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQ 136

Query: 385 QNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF-- 442
            N    T+E +  +       +L L+ N +  +     N T      + L   N +E   
Sbjct: 137 DNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQL--DELNLSDNNNLEELP 194

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
            +        ++LD+S  RIH  +PS+ L+ + + L A +  + 
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPSYGLE-NLKKLRARSTYNL 236

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 50/295 (16%), Positives = 87/295 (29%), Gaps = 58/295 (19%)

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-N 591
             S + EIPS L    +   L      L  +       F   L  +++  N+    I  +
Sbjct: 17  QESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEAD 73

Query: 592 TFMKESRLGMIDLSH-NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVL 650
            F    +L  I +   N      P +  N   L++L I +  I+ +            +L
Sbjct: 74  VFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLL 133

Query: 651 ILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ 710
            +Q N     I          +  I+ L+ N    ++ + +F         N + L  L 
Sbjct: 134 DIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF---------NGTQLDEL- 182

Query: 711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL 770
                              +L  NN             L  +   ++ F G         
Sbjct: 183 -------------------NLSDNNN------------LEEL--PNDVFHG--------A 201

Query: 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825
            G  +L++    +       L NL  L +    N   L    ++LV L       
Sbjct: 202 SGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLKKLP-TLEKLVALMEASLTY 255

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 62.2 bits (151), Expect = 3e-10
 Identities = 38/238 (15%), Positives = 80/238 (33%), Gaps = 24/238 (10%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQ-LVVLPGGKRFLLTLDLSSN 513
                +++  +IPS L     +N   L      L    +            L  +++S N
Sbjct: 14  FLCQESKVT-EIPSDLP----RNAIELRFVLTKLRVIQKGAFSGFGD----LEKIEISQN 64

Query: 514 NLQGPLPV------PPSRTVNYLVSNNSFIGEIPSWLCK-LDSLEILVLSHNNLSGLLPR 566
           ++   +        P    +    +NN  +  I     + L +L+ L++S+  +   LP 
Sbjct: 65  DVLEVIEADVFSNLPKLHEIRIEKANN--LLYINPEAFQNLPNLQYLLISNTGIK-HLPD 121

Query: 567 CLGSFSDKLSILDLRANNFFGTIP-NTFMK-ESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
                S +  +LD++ N    TI  N+F+       ++ L+ N  Q     +       E
Sbjct: 122 VHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDE 181

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
                +N + ++            +L +   + + +           KLR     N +
Sbjct: 182 LNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSL--PSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.2 bits (146), Expect = 1e-09
 Identities = 49/290 (16%), Positives = 84/290 (28%), Gaps = 67/290 (23%)

Query: 128 HLEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSL 185
           +   L       +   I          L  + +S +     I +++   L  L  + +  
Sbjct: 31  NAIELRFVLTKLRV--IQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE- 87

Query: 186 NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR 245
            +   L +    F NL     NL+ L +    I+         L  +  +          
Sbjct: 88  KANNLLYINPEAFQNL----PNLQYLLISNTGIKH--------LPDVHKI---------- 125

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELP--VSIGNLHSLKKLDLSINNLSGELPTSIQNLVS 303
                 +  + + LD+  N  +  +     +G       L L+ N +  E+  S  N   
Sbjct: 126 ------HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQ 178

Query: 304 LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN 363
           L+EL+LS N                 L+ L   ++ F G             +L I R  
Sbjct: 179 LDELNLSDNN---------------NLEELP--NDVFHG--------ASGPVILDISRTR 213

Query: 364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNW 413
                   L NL +L            T      L  L  L   SL+   
Sbjct: 214 IHSLPSYGLENLKKLRARSTYNLKKLPT------LEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 39/234 (16%), Positives = 72/234 (30%), Gaps = 56/234 (23%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQI-RDIFPSWLGTLPNLTVL-ILQSNKFYG 659
           +       +     +      LE ++I  N +   I       LP L  + I ++N    
Sbjct: 35  LRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL 719
           I   P        L+ + +SN      LP    +        ++     L          
Sbjct: 95  I--NPEAFQNLPNLQYLLISNTGIK-HLPDVHKI--------HSLQKVLL---------- 133

Query: 720 LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
                      ++ N              + +I    N F G+            +L L+
Sbjct: 134 ----------DIQDNIN------------IHTI--ERNSFVGLSFE-------SVILWLN 162

Query: 780 NNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLT 832
            N +Q  I +   N T L+ L+LS+NN L ++P       +     ++S   + 
Sbjct: 163 KNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 53.3 bits (128), Expect = 2e-07
 Identities = 36/269 (13%), Positives = 69/269 (25%), Gaps = 59/269 (21%)

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600
              +C   S  + +   + ++ + P            L              F     L 
Sbjct: 3   HHRICHC-SNRVFLCQESKVTEI-PS---DLPRNAIELRFVLTKLRVIQKGAFSGFGDLE 57

Query: 601 MIDLSHNLFQGRIPRS-LINCSKLEFLDI-GDNQIRDIFPSWLGTLPNLTVLILQSNKFY 658
            I++S N     I      N  KL  + I   N +  I P     LPNL  L++ +    
Sbjct: 58  KIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIK 117

Query: 659 GIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW 718
            +           +  ++D+ +N     +   SF                          
Sbjct: 118 HL--PDVHKIHSLQKVLLDIQDNINIHTIERNSF-------------------------- 149

Query: 719 LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL 778
                                     +      + L+ N    +  ++    +  ++   
Sbjct: 150 ------------------------VGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLS 185

Query: 779 DNNNLQGHIPSCLGNLTNLESLDLSNNNF 807
           DNNNL+          +    LD+S    
Sbjct: 186 DNNNLEELPNDVFHGASGPVILDISRTRI 214

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 45.2 bits (107), Expect = 6e-05
 Identities = 12/86 (13%), Positives = 31/86 (36%), Gaps = 2/86 (2%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNNF 807
              +     +   +   + +    L+ + +  N++   I +    NL  L  + +   N 
Sbjct: 32  AIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANN 91

Query: 808 LGQIPQQ-LVELTFLEFFNVSDNYLT 832
           L  I  +    L  L++  +S+  + 
Sbjct: 92  LLYINPEAFQNLPNLQYLLISNTGIK 117

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 68.5 bits (168), Expect = 5e-13
 Identities = 42/216 (19%), Positives = 86/216 (39%), Gaps = 15/216 (6%)

Query: 205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQS-SLGNLSKLLHLDLSL 263
             + +TL L    +R+   H  +NL +++ + +       +++S S  NLSK+ H+++  
Sbjct: 30  PPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 264 NELLGELPVSI-GNLHSLKKLDLSINNLSGELP--TSIQNLVSLEELDLSFNKLSGEFPW 320
              L  +       L  LK L +    L    P  T + +      L+++ N      P 
Sbjct: 90  TRNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148

Query: 321 SIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLI 379
           +   G   +  +L   +N F+  +     N   L+ + + +  +   I   +   +    
Sbjct: 149 NAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 380 T-LDLSQNSYRGTMELDFL-LVSLKNLEVLSLSSNW 413
           + LD+SQ S      +  L    L++L+ L   + W
Sbjct: 208 SLLDVSQTS------VTALPSKGLEHLKELIARNTW 237

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 59.6 bits (145), Expect = 6e-10
 Identities = 39/219 (17%), Positives = 74/219 (33%), Gaps = 39/219 (17%)

Query: 129 LEWLNLAFNDFKSSEIPSEI-INLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS 187
            + L L     ++  IPS    NL  +S + +S      Q+ S                 
Sbjct: 33  TQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHS--------------- 75

Query: 188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN-LANLSSLTFLSLHSCGLQGRI 246
                     F N    LS +  +++      + I  + L  L  L FL + + GL+   
Sbjct: 76  ----------FYN----LSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLK-MF 120

Query: 247 Q--SSLGNLSKLLHLDLSLNELLGELPV-SIGNLHS-LKKLDLSINNLSGELPTSIQNLV 302
              + + +      L+++ N  +  +PV +   L +    L L  N  +  +     N  
Sbjct: 121 PDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGT 179

Query: 303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS 341
            L+ + L+ NK           G ++    LD +    +
Sbjct: 180 KLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 56.2 bits (136), Expect = 9e-09
 Identities = 36/215 (16%), Positives = 74/215 (34%), Gaps = 13/215 (6%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           S + L L   +L      +  NL ++  + +S +    +        N +++  ++  + 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNT 90

Query: 339 KFSGELHASI-GNLRSLEVLAIGRCNFSGRIP--SSLRNLTQLITLDLSQNSYRGTMELD 395
           +    +       L  L+ L I         P  + + +      L+++ N Y  ++ ++
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149

Query: 396 FLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF--PN-FLKNQHHL 452
                      L L +N  + +     N T  K   V L     +     + F       
Sbjct: 150 AFQGLCNETLTLKLYNNGFTSVQGYAFNGT--KLDAVYLNKNKYLTVIDKDAFGGVYSGP 207

Query: 453 MLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNL 487
            LLD+S   +   +PS  L+   + L A N    L
Sbjct: 208 SLLDVSQTSVT-ALPSKGLE-HLKELIARNT-WTL 239

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 33/236 (13%), Positives = 75/236 (31%), Gaps = 37/236 (15%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHN 607
           S + L L   +L  +      +    +S + +  +     +  ++F   S++  I++ + 
Sbjct: 32  STQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 608 LFQGRIPRS-LINCSKLEFLDIGDNQIRDI-FPSWLGTLPNLTVLILQSNKFYGIIREPR 665
                I    L     L+FL I +  ++     + + +     +L +  N +   I    
Sbjct: 91  RNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNA 150

Query: 666 IDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVA 725
                ++   + L NN FT  +   +F         N + L  +                
Sbjct: 151 FQGLCNETLTLKLYNNGFT-SVQGYAF---------NGTKLDAV---------------- 184

Query: 726 TYDYSLKMNNKGQIM---TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL 778
                L  N    ++    +  V    + + +S      +    + +LK L   N 
Sbjct: 185 ----YLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.7 bits (127), Expect = 1e-07
 Identities = 36/216 (16%), Positives = 69/216 (31%), Gaps = 36/216 (16%)

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
            + L + +  +R I       LPN++ + +  +     + E       SK+  I++ N R
Sbjct: 33  TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQL-ESHSFYNLSKVTHIEIRNTR 91

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQI--M 740
               +   +              LK+L                     +          +
Sbjct: 92  NLTYIDPDAL--------KELPLLKFL--------------------GIFNTGLKMFPDL 123

Query: 741 TYDKVPDILTSIILSSNRFDGMIPT-SIANL-KGLQVLNLDNNNLQGHIPSCLGNLTNLE 798
           T     DI   + ++ N +   IP  +   L      L L NN     +     N T L+
Sbjct: 124 TKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLD 182

Query: 799 SLDLSNNNFLGQIPQQLVE--LTFLEFFNVSDNYLT 832
           ++ L+ N +L  I +       +     +VS   +T
Sbjct: 183 AVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT 218

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 43/270 (15%), Positives = 84/270 (31%), Gaps = 65/270 (24%)

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
               +   ++   P+   +      L L    +   IPS        N+S + +S ++  
Sbjct: 14  EDFRVTCKDIQRIPSLPPS---TQTLKLIETHLR-TIPSHAFSNLP-NISRIYVSIDV-- 66

Query: 490 GFDQQLVVLPGGK----RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPS-WL 544
                L  L          +  +++ +                        +  I    L
Sbjct: 67  ----TLQQLESHSFYNLSKVTHIEIRNTRN---------------------LTYIDPDAL 101

Query: 545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMK-ESRLGMI 602
            +L  L+ L + +  L           +D   IL++  N +  +IP N F    +    +
Sbjct: 102 KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTL 161

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
            L +N F   +     N +KL+ + +  N+       +L  +            F G+  
Sbjct: 162 KLYNNGFT-SVQGYAFNGTKLDAVYLNKNK-------YLTVIDKDA--------FGGVY- 204

Query: 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692
                   S   ++D+S    T  LPSK  
Sbjct: 205 --------SGPSLLDVSQTSVT-ALPSKGL 225

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 51/290 (17%), Positives = 88/290 (30%), Gaps = 79/290 (27%)

Query: 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS 426
           RIPS   +     TL L +   R      F   +L N+  + +S +    L ++ S++  
Sbjct: 25  RIPSLPPSTQ---TLKLIETHLRTIPSHAF--SNLPNISRIYVSID--VTLQQLESHS-- 75

Query: 427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
                                N   +  +++ + R    I    L      L  L + + 
Sbjct: 76  -------------------FYNLSKVTHIEIRNTRNLTYIDPDALKELP-LLKFLGIFNT 115

Query: 487 LLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCK 546
            L  F     V          L+++ N     +P             N+F G     LC 
Sbjct: 116 GLKMFPDLTKV--YSTDIFFILEITDNPYMTSIP------------VNAFQG-----LCN 156

Query: 547 LDSLEILVLSHNNLSGLLPRCLGSFSD-KLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
                 L L +N  + +      +F+  KL  + L  N +   I                
Sbjct: 157 E--TLTLKLYNNGFTSVQG---YAFNGTKLDAVYLNKNKYLTVIDK-------------- 197

Query: 606 HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
            + F G         S    LD+    +  + PS    L +L  LI ++ 
Sbjct: 198 -DAFGGV-------YSGPSLLDVSQTSVTAL-PS--KGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 23/137 (16%), Positives = 47/137 (34%), Gaps = 9/137 (6%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLS-YLNLSHSS 163
            L + N+ L       + ++       L +  N + +S   +    L   +  L L ++ 
Sbjct: 109 FLGIFNTGL-KMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNG 167

Query: 164 FFGQIPSEILELVNLVSLDLSLNSGYGLE-LQKPNFANLVEKLSNLETLDLGYVSIRSTI 222
           F   +         L ++ L+ N    L  + K  F  +    S    LD+   S+ +  
Sbjct: 168 F-TSVQGYAFNGTKLDAVYLNKNKY--LTVIDKDAFGGV---YSGPSLLDVSQTSVTALP 221

Query: 223 PHNLANLSSLTFLSLHS 239
              L +L  L   +  +
Sbjct: 222 SKGLEHLKELIARNTWT 238

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 70.5 bits (173), Expect = 7e-13
 Identities = 58/339 (17%), Positives = 105/339 (30%), Gaps = 73/339 (21%)

Query: 226 LANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNEL-------LGELPVSI 274
           +A  S +   SL    +       + + L     +  + LS N +       L E    I
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSEN---I 56

Query: 275 GNLHSLKKLDLS---INNLSGELPTSIQNLV-------SLEELDLSFNKLSGEFPWSIV- 323
            +   L+  + S      +  E+P +++ L+        L  + LS N         ++ 
Sbjct: 57  ASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLID 116

Query: 324 -IGNFTQLQSLDFTSNKFSGE-------------LHASIGNLRSLEVLAIGRCNFSGR-- 367
            +   T L+ L   +N    +             ++    N   L  +  GR        
Sbjct: 117 FLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSM 176

Query: 368 --IPSSLRNLTQLITLDLSQNSYR---GTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTS 422
                + ++   L T+ + QN  R       L   L   + L+VL L  N          
Sbjct: 177 KEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDN---------- 226

Query: 423 NTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGK----IPSWLLDPSTQNL 478
                 FT +G  +         LK+  +L  L L+   +  +    +           L
Sbjct: 227 -----TFTHLGSSA-----LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGL 276

Query: 479 SALNLSHNLLT--GFDQQLVVLPGGKRFLLTLDLSSNNL 515
             L L +N +          V+      LL L+L+ N  
Sbjct: 277 QTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRF 315

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 64.7 bits (158), Expect = 5e-11
 Identities = 58/387 (14%), Positives = 108/387 (27%), Gaps = 104/387 (26%)

Query: 279 SLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQS 332
           S++   L ++ ++ E    +   +    S++E+ LS N +  E    +   I +   L+ 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64

Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS--YRG 390
            +F+            G ++     A+        +  +L    +L T+ LS N+     
Sbjct: 65  AEFSDI--------FTGRVKDEIPEALRL------LLQALLKCPKLHTVRLSDNAFGPTA 110

Query: 391 TMELDFLLVSLKNLEVLSLSSNW------------LSLLTKVTSNTTSQKFTVVGLRSCN 438
              L   L     LE L L +N             L  L        +     +      
Sbjct: 111 QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 439 L-----IEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
           L      E+    ++   L  + +  N I             ++L    L++        
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIR--------PEGIEHLLLEGLAYC------- 215

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEIL 553
                    + L  LDL  N     L               S +      L    +L  L
Sbjct: 216 ---------QELKVLDLQDNTF-THLGS-------------SALAIA---LKSWPNLREL 249

Query: 554 VLSHNNLSG----LLPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            L+   LS      +           L  L L+ N                 +  L   +
Sbjct: 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI-----------ELDAVRTLKTVI 298

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRD 635
            +            L FL++  N+  +
Sbjct: 299 DE--------KMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 63.2 bits (154), Expect = 2e-10
 Identities = 45/287 (15%), Positives = 94/287 (32%), Gaps = 50/287 (17%)

Query: 102 HVMKLDLSNSCL--YGSINSSSSLFKLVHLEWLNLAFNDF--KSSEIP-------SEIIN 150
            V ++ LS + +    +   S ++     LE    +         EIP         ++ 
Sbjct: 33  SVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLK 92

Query: 151 LSRLSYLNLSHSSFFGQIPSEILEL----VNLVSLDLSLN-------SGYGLELQKPNFA 199
             +L  + LS ++F       +++       L  L L  N       +     LQ+    
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVN 152

Query: 200 NLVEKLSNLETLDLGYVSIR----STIPHNLANLSSLTFLSLHSC-----GLQGRIQSSL 250
              +    L ++  G   +             +   L  + +        G++  +   L
Sbjct: 153 KKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL 212

Query: 251 GNLSKLLHLDLSLNEL-------LGELPVSIGNLHSLKKLDLSINNLSGE----LPTSIQ 299
               +L  LDL  N         L     ++ +  +L++L L+   LS      +  +  
Sbjct: 213 AYCQELKVLDLQDNTFTHLGSSALAI---ALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 300 NLV--SLEELDLSFNKLSGEFPWSI---VIGNFTQLQSLDFTSNKFS 341
            L    L+ L L +N++  +   ++   +      L  L+   N+FS
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 57.4 bits (139), Expect = 1e-08
 Identities = 62/409 (15%), Positives = 110/409 (26%), Gaps = 124/409 (30%)

Query: 303 SLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG 360
           S+E   L  + ++ E   S+  V+     ++ +  + N    E               + 
Sbjct: 5   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTE-----------AARWLS 53

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNS--------YRGTMELDFLLVSLKNLEVLSLSSN 412
                      + +   L   + S                 L   L+    L  + LS N
Sbjct: 54  EN---------IASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104

Query: 413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD 472
                               G  +   +   +FL     L  L L +N +          
Sbjct: 105 AF------------------GPTAQEPLI--DFLSKHTPLEHLYLHNNGLG--------P 136

Query: 473 PSTQNLS-ALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLV 531
            +   ++ AL                       L ++    N L+               
Sbjct: 137 QAGAKIARALQELAVNKKA---------KNAPPLRSIICGRNRLE--------------- 172

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNL-----SGLLPRCLGSFSDKLSILDLRANNFF 586
             N  + E          L  + +  N +       LL   L ++  +L +LDL+ N F 
Sbjct: 173 --NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGL-AYCQELKVLDLQDNTF- 228

Query: 587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRD----IFPSWLG 642
                     + LG   L+          +L +   L  L + D  +             
Sbjct: 229 ----------THLGSSALA---------IALKSWPNLRELGLNDCLLSARGAAAVVDAFS 269

Query: 643 TLPN--LTVLILQSNKF-----YGIIREPRIDCGFSKLRIIDLSNNRFT 684
            L N  L  L LQ N+        +     ID     L  ++L+ NRF+
Sbjct: 270 KLENIGLQTLRLQYNEIELDAVRTLKTV--IDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 40/270 (14%), Positives = 80/270 (29%), Gaps = 54/270 (20%)

Query: 599 LGMIDLSHNLFQGR----IPRSLINCSKLEFLDIGDNQIRD----IFPSWLGTLPNLTVL 650
           +    L  +         +   L+    ++ + +  N I           + +  +L + 
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 651 ILQSNKFYGIIREPRIDCGF--------SKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVN 702
                    +  E                KL  + LS+N F     ++  L  + +   +
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT--AQEPLI-DFLS-KH 121

Query: 703 TSDLKYLQDVISPKEWL----LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR 758
           T  L++L        +L    L  +        +   +  +    K    L SII   NR
Sbjct: 122 TP-LEHL--------YLHNNGLGPQAGAKI--ARALQELAVNKKAKNAPPLRSIICGRNR 170

Query: 759 F--DGM--IPTSIANLKGLQVLNLDNNNL-----QGHIPSCLGNLTNLESLDLSNNNF-- 807
                M     +  + + L  + +  N +     +  +   L     L+ LDL +N F  
Sbjct: 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTH 230

Query: 808 -----LGQIPQQLVELTFLEFFNVSDNYLT 832
                L      L     L    ++D  L+
Sbjct: 231 LGSSALAIA---LKSWPNLRELGLNDCLLS 257

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 43.2 bits (102), Expect = 3e-04
 Identities = 47/291 (16%), Positives = 85/291 (29%), Gaps = 91/291 (31%)

Query: 544 LCKLDSLEILVLSHNNLSGLLPRCLGSF---SDKLSILDLRANNFFGTIPNTFMKESRLG 600
           L + DS++ +VLS N +     R L         L I +  ++ F G + +    E    
Sbjct: 28  LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF-SDIFTGRVKD----EIPEA 82

Query: 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTL----PNLTVLILQSNK 656
           +  L          ++L+ C KL  + + DN         L         L  L L +N 
Sbjct: 83  LRLLL---------QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNG 133

Query: 657 F-----------YGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSD 705
                          +   +       LR I    NR                       
Sbjct: 134 LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR----------------------- 170

Query: 706 LKYLQDVISPKEWLLSDEVATY-DYSLKMNNKGQIMTYDKVPDILTSIILSSNRF--DGM 762
                         L +        + + +              L ++ +  N    +G+
Sbjct: 171 --------------LENGSMKEWAKTFQSHRL------------LHTVKMVQNGIRPEGI 204

Query: 763 ---IPTSIANLKGLQVLNLDNNNL--QG--HIPSCLGNLTNLESLDLSNNN 806
              +   +A  + L+VL+L +N     G   +   L +  NL  L L++  
Sbjct: 205 EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCL 255

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.0 bits (168), Expect = 3e-12
 Identities = 61/385 (15%), Positives = 120/385 (31%), Gaps = 55/385 (14%)

Query: 47  LQFKESLIINDTIEESYHYYPW------SSGCRPKAASWKPEEGNIDCC--SWDGVECSE 98
           L+  ++    D  ++S  +Y                     EE  +  C      V    
Sbjct: 212 LELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRM 271

Query: 99  NTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLN 158
            T  +M  +   S  + + +  +    +   +    + ND         I   S      
Sbjct: 272 GTLLLMVDEAPLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKEC 331

Query: 159 LSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE----KLSNLETLDLG 214
           +           +      L   +LS+     L+ +  +   L E        L T+ L 
Sbjct: 332 VLLKDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILL 391

Query: 215 YVSIRSTIPH--NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLH--------LDLSLN 264
             ++   +     L   S+L  +          ++S     + +L         L L+  
Sbjct: 392 MRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV- 323
           +L   +   +  L  +  LDLS N L   LP ++  L  LE L  S N L      ++  
Sbjct: 452 DL--TVLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-----NVDG 503

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
           + N  +LQ L   +N+        +    +++                L +  +L+ L+L
Sbjct: 504 VANLPRLQELLLCNNR--------LQQSAAIQ---------------PLVSCPRLVLLNL 540

Query: 384 SQNS-YRGTMELDFLLVSLKNLEVL 407
             NS  +     + L   L ++  +
Sbjct: 541 QGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 65.9 bits (160), Expect = 3e-11
 Identities = 45/260 (17%), Positives = 85/260 (32%), Gaps = 37/260 (14%)

Query: 434 LRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
           L       +         L   +LS  +    + S L   S + L  L   +        
Sbjct: 333 LLKDRPECWCRDSATDEQLFRCELSVEKST-VLQSELE--SCKELQELEPENKW---CLL 386

Query: 494 QLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEIL 553
            +++L      LL    +         V P R        + F+ E      +   + +L
Sbjct: 387 TIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVL 446

Query: 554 VLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRI 613
            L+H +L+ L         ++L ++                       +DLSHN  +  +
Sbjct: 447 HLAHKDLTVL------CHLEQLLLVT---------------------HLDLSHNRLR-AL 478

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL 673
           P +L     LE L   DN + ++    +  LP L  L+L +N+        +      +L
Sbjct: 479 PPALAALRCLEVLQASDNALENVDG--VANLPRLQELLLCNNRLQQ-SAAIQPLVSCPRL 535

Query: 674 RIIDLSNNRFTGKLPSKSFL 693
            +++L  N    +   +  L
Sbjct: 536 VLLNLQGNSLCQEEGIQERL 555

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 64.0 bits (155), Expect = 1e-10
 Identities = 57/356 (16%), Positives = 111/356 (31%), Gaps = 47/356 (13%)

Query: 235 LSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS--LKKLDLSINNLSG 292
              +   L GR +         +  + +   +    P+++G+     L  +D +  ++  
Sbjct: 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEW 287

Query: 293 ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD--FTSNKFSGELHASIGN 350
             P        +   DL    L+ + P       +T   S                    
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSAT 347

Query: 351 LRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLS 410
              L    +     S  + S L +  +L  L+        T     +++ ++ L+ L   
Sbjct: 348 DEQLFRCELS-VEKSTVLQSELESCKELQELEPENKWCLLT-----IILLMRALDPLLYE 401

Query: 411 SNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIP--S 468
              L   + + +    +   +  LRS  L+E          + +L L+   +   +    
Sbjct: 402 KETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLT-VLCHLE 460

Query: 469 WLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVN 528
            L       ++ L+LSHN L      L  L      L  L  S N L+            
Sbjct: 461 QL-----LLVTHLDLSHNRLRALPPALAALRC----LEVLQASDNALE------------ 499

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL-LPRCLGSFSDKLSILDLRAN 583
                      +   +  L  L+ L+L +N L      + L S   +L +L+L+ N
Sbjct: 500 ----------NVDG-VANLPRLQELLLCNNRLQQSAAIQPLVSCP-RLVLLNLQGN 543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.3 bits (122), Expect = 1e-06
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813
           L+      +    +  L  +  L+L +N L+  +P  L  L  LE L  S+N  L  +  
Sbjct: 448 LAHKDLTVLC--HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNA-LENVD- 502

Query: 814 QLVELTFLEFFNVSDNYLT 832
            +  L  L+   + +N L 
Sbjct: 503 GVANLPRLQELLLCNNRLQ 521

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 65.4 bits (160), Expect = 9e-12
 Identities = 46/213 (21%), Positives = 82/213 (38%), Gaps = 25/213 (11%)

Query: 170 SEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANL 229
                L N V  +L   S   L  Q        ++LS ++  +    +I+S     +   
Sbjct: 13  FPDPGLANAVKQNLGKQSVTDLVSQ--------KELSGVQNFNGDNSNIQSL--AGMQFF 62

Query: 230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN 289
           ++L  L L    +   + S L +L+KL  L ++ N L     ++      L +L L  N 
Sbjct: 63  TNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNE 117

Query: 290 LSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV-IGNFTQLQSLDFTSNKFSGELHASI 348
           L      S+ +L +LE L +  NKL      SIV +G  ++L+ LD   N+ +      +
Sbjct: 118 LRD--TDSLIHLKNLEILSIRNNKLK-----SIVMLGFLSKLEVLDLHGNEITN--TGGL 168

Query: 349 GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
             L+ +  + +               L    T+
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTV 201

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 60.4 bits (147), Expect = 5e-10
 Identities = 46/200 (23%), Positives = 73/200 (36%), Gaps = 22/200 (11%)

Query: 116 SINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILEL 175
            IN       L +    NL                LS +   N  +S+   Q  + +   
Sbjct: 8   PINQVFPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNI--QSLAGMQFF 62

Query: 176 VNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFL 235
            NL  L LS N       Q  + + L + L+ LE L +    ++     NL  + S    
Sbjct: 63  TNLKELHLSHN-------QISDLSPL-KDLTKLEELSVNRNRLK-----NLNGIPSACLS 109

Query: 236 SLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP 295
            L     + R   SL +L  L  L +  N+L  +  V +G L  L+ LDL  N ++    
Sbjct: 110 RLFLDNNELRDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITN--T 165

Query: 296 TSIQNLVSLEELDLSFNKLS 315
             +  L  +  +DL+  K  
Sbjct: 166 GGLTRLKKVNWIDLTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 59.7 bits (145), Expect = 7e-10
 Identities = 47/215 (21%), Positives = 81/215 (37%), Gaps = 28/215 (13%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
           + +K +L       S+    S  +L  ++  N   ++ +S    + +   + L  L+LSH
Sbjct: 20  NAVKQNLGKQ----SVTDLVSQKELSGVQNFNGDNSNIQS---LAGMQFFTNLKELHLSH 72

Query: 162 SSFFGQIP--SEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIR 219
           +    QI   S + +L  L  L ++ N    L              + L  L L    +R
Sbjct: 73  N----QISDLSPLKDLTKLEELSVNRNRLKNLN---------GIPSACLSRLFLDNNELR 119

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
            T   +L +L +L  LS+ +  L  +    LG LSKL  LDL  NE+       +  L  
Sbjct: 120 DT--DSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEI--TNTGGLTRLKK 173

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314
           +  +DL+      E       L     +     + 
Sbjct: 174 VNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRW 208

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 51.6 bits (124), Expect = 3e-07
 Identities = 34/224 (15%), Positives = 70/224 (31%), Gaps = 51/224 (22%)

Query: 616 SLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRI 675
           S    S ++  +  ++ I+ +    +    NL  L L  N+    I +       +KL  
Sbjct: 36  SQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLSHNQ----ISDLSPLKDLTKLEE 89

Query: 676 IDLSNNRFT----GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSL 731
           + ++ NR            S L  +  ++ +T  L +L++                    
Sbjct: 90  LSVNRNRLKNLNGIPSACLSRLFLDNNELRDTDSLIHLKN-------------------- 129

Query: 732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCL 791
                            L  + + +N+   +    +  L  L+VL+L  N +       L
Sbjct: 130 -----------------LEILSIRNNKLKSI--VMLGFLSKLEVLDLHGNEITNTGG--L 168

Query: 792 GNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI 835
             L  +  +DL+    + +  +   EL         D     P 
Sbjct: 169 TRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPY 212

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 50.0 bits (120), Expect = 1e-06
 Identities = 45/291 (15%), Positives = 90/291 (30%), Gaps = 73/291 (25%)

Query: 274 IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333
              L +  K +L   +++     S + L  ++  +   + +         +  FT L+ L
Sbjct: 15  DPGLANAVKQNLGKQSVTDL--VSQKELSGVQNFNGDNSNIQSLAG----MQFFTNLKEL 68

Query: 334 DFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME 393
             + N+        I +L                  S L++LT+L  L +++N       
Sbjct: 69  HLSHNQ--------ISDL------------------SPLKDLTKLEELSVNRNR------ 96

Query: 394 LDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLM 453
               L +L  +    LS  +L                       N +   + L +  +L 
Sbjct: 97  ----LKNLNGIPSACLSRLFLD---------------------NNELRDTDSLIHLKNLE 131

Query: 454 LLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSN 513
           +L + +N++   I    L      L  L+L  N +T     L  L      +  +DL+  
Sbjct: 132 ILSIRNNKLK-SIVM--LG-FLSKLEVLDLHGNEITNTG-GLTRLKK----VNWIDLTGQ 182

Query: 514 NLQ-GPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL 563
                P+   P   +   V +       P ++    S     +        
Sbjct: 183 KCVNEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 47.3 bits (113), Expect = 8e-06
 Identities = 40/218 (18%), Positives = 68/218 (31%), Gaps = 71/218 (32%)

Query: 617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII 676
               +     ++G   + D+       L  +      ++     I+       F+ L+ +
Sbjct: 15  DPGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSN----IQSLAGMQFFTNLKEL 68

Query: 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNK 736
            LS+N                 +I + S LK L                           
Sbjct: 69  HLSHN-----------------QISDLSPLKDLTK------------------------- 86

Query: 737 GQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG--LQVLNLDNNNLQGHIPSCLGNL 794
                       L  + ++ NR       ++  +    L  L LDNN L+      L +L
Sbjct: 87  ------------LEELSVNRNRL-----KNLNGIPSACLSRLFLDNNELRD--TDSLIHL 127

Query: 795 TNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
            NLE L + NN  L  I   L  L+ LE  ++  N +T
Sbjct: 128 KNLEILSIRNNK-LKSIV-MLGFLSKLEVLDLHGNEIT 163

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 44/247 (17%), Positives = 71/247 (28%), Gaps = 68/247 (27%)

Query: 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVV 497
             I          + +  +L    +   +    L      +   N  ++ +      +  
Sbjct: 7   TPINQVFPDPGLANAVKQNLGKQSVTDLVSQKELS----GVQNFNGDNSNIQSLA-GMQF 61

Query: 498 LPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSH 557
                  L  L LS N                       I ++   L  L  LE L ++ 
Sbjct: 62  FTN----LKELHLSHNQ----------------------ISDLSP-LKDLTKLEELSVNR 94

Query: 558 NNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL 617
           N L  L      +      +  L                       L +N  + R   SL
Sbjct: 95  NRLKNL------NGIPSACLSRL----------------------FLDNN--ELRDTDSL 124

Query: 618 INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID 677
           I+   LE L I +N+++ I    LG L  L VL L  N+    I          K+  ID
Sbjct: 125 IHLKNLEILSIRNNKLKSIVM--LGFLSKLEVLDLHGNE----ITNTGGLTRLKKVNWID 178

Query: 678 LSNNRFT 684
           L+  +  
Sbjct: 179 LTGQKCV 185

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 46.6 bits (111), Expect = 1e-05
 Identities = 35/186 (18%), Positives = 70/186 (37%), Gaps = 20/186 (10%)

Query: 530 LVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI 589
            +   + I ++      L +     L   +++ L+       S  +   +   N+   ++
Sbjct: 2   SIQRPTPINQVFP-DPGLANAVKQNLGKQSVTDLVS--QKELS-GVQNFNG-DNSNIQSL 56

Query: 590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTV 649
                  + L  + LSHN  Q      L + +KLE L +  N+++++          L+ 
Sbjct: 57  AG-MQFFTNLKELHLSHN--QISDLSPLKDLTKLEELSVNRNRLKNLNG---IPSACLSR 110

Query: 650 LILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTS 704
           L L +N+    +R+         L I+ + NN+       G L     L  +  +I NT 
Sbjct: 111 LFLDNNE----LRDTDSLIHLKNLEILSIRNNKLKSIVMLGFLSKLEVLDLHGNEITNTG 166

Query: 705 DLKYLQ 710
            L  L+
Sbjct: 167 GLTRLK 172

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 65.3 bits (159), Expect = 5e-11
 Identities = 50/361 (13%), Positives = 106/361 (29%), Gaps = 51/361 (14%)

Query: 105 KLDLSNS-CLYGSINSSSSLFK-LVHLEWLNLA--FNDFKSSEIPSEIINLSRLSYLNLS 160
           +LDL  S     S +  S        L  LN++   ++   S +   +     L  L L+
Sbjct: 160 ELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLN 219

Query: 161 HSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS 220
            +    ++ + +     L  L     +           +  +     L  L   + ++ +
Sbjct: 220 RAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPA 279

Query: 221 TIPHNLANLSSLTFLSLHSCGLQGR-IQSSLGNLSKLLHLDL------------------ 261
            +P   +  S LT L+L    +Q   +   L    KL  L +                  
Sbjct: 280 YLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKD 339

Query: 262 -------SLNELLGELPVSIG---------NLHSLKKLDLSINNLSGE-LPTSIQNLVSL 304
                       + E  V++              L+ +      ++   L T  +N  ++
Sbjct: 340 LRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNM 399

Query: 305 EELDLSFNKLSGEFPWSIVIG---------NFTQLQSLDFTSNKFSGELHASIGNLRSLE 355
               L   +       ++            +   L+ L  +               + +E
Sbjct: 400 TRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKME 459

Query: 356 VLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWL 414
           +L++     S   +   L     L  L++  +   G   L      L+ +  L +SS  +
Sbjct: 460 MLSVAFAGDSDLGMHHVLSGCDSLRKLEIR-DCPFGDKALLANASKLETMRSLWMSSCSV 518

Query: 415 S 415
           S
Sbjct: 519 S 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 63.4 bits (154), Expect = 2e-10
 Identities = 49/327 (14%), Positives = 87/327 (26%), Gaps = 25/327 (7%)

Query: 120 SSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLV 179
             S +++       +   +  +    + I    ++  + L     F             V
Sbjct: 34  CKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYV 93

Query: 180 SLDLSLNSGYGLELQKPNFAN----------LVEKLSNLETLDLGYVSIRST--IPHNLA 227
              +   S     L++               + +   N + L L      ST  +    A
Sbjct: 94  YPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAA 153

Query: 228 NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVS-------IGNLHSL 280
              +L  L L    +       L +        +SLN       VS       +    +L
Sbjct: 154 TCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNL 213

Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF----PWSIVIGNFTQLQSLDFT 336
           K L L+      +L T +Q    LEEL                 S+ +    +L+ L   
Sbjct: 214 KSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGF 273

Query: 337 SNKFSGELHASIGNLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQN-SYRGTMEL 394
            +     L A       L  L +         +   L    +L  L +       G   L
Sbjct: 274 WDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVL 333

Query: 395 DFLLVSLKNLEVLSLSSNWLSLLTKVT 421
                 L+ L V       +     +T
Sbjct: 334 ASTCKDLRELRVFPSEPFVMEPNVALT 360

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.6 bits (152), Expect = 2e-10
 Identities = 46/170 (27%), Positives = 67/170 (39%), Gaps = 17/170 (10%)

Query: 127 VHLEWLNLAFNDFKSSEIPSEII--NLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDL 183
            +   L+L+ N+   S + +E     L+ L  L LSH+     I SE    + NL  LDL
Sbjct: 39  SYTALLDLSHNNL--SRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDL 95

Query: 184 SLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ 243
           S N      L   +   L   L  LE L L    I     +   +++ L  L L    + 
Sbjct: 96  SSN-----HLHTLD-EFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS 149

Query: 244 GRIQ----SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN 289
            R           L KL+ LDLS N+L       +  L +  K  L ++N
Sbjct: 150 -RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHN 198

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.2 bits (151), Expect = 2e-10
 Identities = 43/203 (21%), Positives = 68/203 (33%), Gaps = 39/203 (19%)

Query: 259 LDLSLNELLGELP--VSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLS 315
           LDLS N L   L    +   L +L  L LS N+L+  + +     + +L  LDLS N L 
Sbjct: 44  LDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101

Query: 316 GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNL 375
                 +       L+ L   +N            +  ++              ++  ++
Sbjct: 102 -TLDEFLFSDL-QALEVLLLYNNH-----------IVVVD-------------RNAFEDM 135

Query: 376 TQLITLDLSQNSYRGTMELDFL-LVSLKNLEVLSLSSNWLSLLTKVT-SNTTSQKFTVVG 433
            QL  L LSQN               L  L +L LSSN L  L         +     + 
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 434 LR------SCNLIEFPNFLKNQH 450
           L        C L +  +  + + 
Sbjct: 196 LHNNPLECDCKLYQLFSHWQYRQ 218

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 57.5 bits (139), Expect = 8e-09
 Identities = 48/209 (22%), Positives = 71/209 (33%), Gaps = 61/209 (29%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK----RFLLTLDL 510
           LDLS N +      W     T NL +L LSHN        L  +          L  LDL
Sbjct: 44  LDLSHNNLSRLRAEWTPTRLT-NLHSLLLSHN-------HLNFISSEAFVPVPNLRYLDL 95

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
           SSN+L               +    F          L +LE+L+L +N++  +      +
Sbjct: 96  SSNHLHT-------------LDEFLFSD--------LQALEVLLLYNNHIVVVDR---NA 131

Query: 571 FSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI 628
           F D  +L  L L  N             ++L                      KL  LD+
Sbjct: 132 FEDMAQLQKLYLSQNQISRFPVELIKDGNKL---------------------PKLMLLDL 170

Query: 629 GDNQIRDIFPSWLGTLPNLTV--LILQSN 655
             N+++ +  + L  LP      L L +N
Sbjct: 171 SSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 50.6 bits (121), Expect = 1e-06
 Identities = 32/162 (19%), Positives = 56/162 (34%), Gaps = 27/162 (16%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
              +L LSHNNLS L      +    L  L L  N+    I                   
Sbjct: 40  YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFIS------------------ 80

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
                  + +    L +LD+  N +  +       L  L VL+L +N    +  +     
Sbjct: 81  -----SEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVV--DRNAFE 133

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ 710
             ++L+ + LS N+ + + P +     N +  +   DL   +
Sbjct: 134 DMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNK 174

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 40/151 (26%), Positives = 65/151 (43%), Gaps = 9/151 (5%)

Query: 368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLL-TKVTSNTTS 426
           +P SL + T    LDLS N+    +  ++    L NL  L LS N L+ + ++      +
Sbjct: 33  VPQSLPSYTA--LLDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPN 89

Query: 427 QKFTVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
            +   + L S +L         +   L +L L +N I   +     +     L  L LS 
Sbjct: 90  LR--YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFE-DMAQLQKLYLSQ 145

Query: 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
           N ++ F  +L+        L+ LDLSSN L+
Sbjct: 146 NQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 8e-06
 Identities = 39/210 (18%), Positives = 65/210 (30%), Gaps = 56/210 (26%)

Query: 602 IDLSHNLFQGRIPR--SLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG 659
           +DLSHN    R+    +    + L  L +  N +  I       +PNL  L L SN  + 
Sbjct: 44  LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHT 102

Query: 660 IIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWL 719
           +  +  +      L ++ L NN     +   +F         + + L+ L          
Sbjct: 103 L--DEFLFSDLQALEVLLLYNNHIV-VVDRNAF--------EDMAQLQKLY--------- 142

Query: 720 LSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD 779
           LS             N+            ++                   L  L +L+L 
Sbjct: 143 LS------------QNQ------------ISRF--PVELIKDG-----NKLPKLMLLDLS 171

Query: 780 NNNLQGHIPSCLGNLTNL--ESLDLSNNNF 807
           +N L+    + L  L       L L NN  
Sbjct: 172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPL 201

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 10/105 (9%)

Query: 745 VPDILTSIILSSNRFDGMIP-TSIANLKGLQVLNLDNNNLQGHIPSC-LGNLTNLESLDL 802
           +P     + LS N    +    +   L  L  L L +N+L   I S     + NL  LDL
Sbjct: 37  LPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDL 95

Query: 803 SNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
           S+N+ L  + +    +L  LE   + +N++   + +      F++
Sbjct: 96  SSNH-LHTLDEFLFSDLQALEVLLLYNNHIVV-VDRN----AFED 134

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 62.4 bits (152), Expect = 2e-10
 Identities = 56/358 (15%), Positives = 108/358 (30%), Gaps = 57/358 (15%)

Query: 199 ANLVEKLSNLETLDLGYVSIRSTIPHNLA-----NLSSLTFLSLHSCGLQGRIQSSLG-- 251
                    + +LDL   ++ S     L        +S+T L+L    L  +    L   
Sbjct: 15  EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQI 74

Query: 252 ---NLSKLLHLDLSLNELLGELPVSIGNL-----HSLKKLDLSINNLSGE----LPTSIQ 299
                + +  L+LS N L  +    +         ++  LDL  N+ S +       +  
Sbjct: 75  LAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS 134

Query: 300 NL-VSLEELDLSFNKLSGEFPWSIVIG---NFTQLQSLDFTSNKFSGE-----LHASIGN 350
           NL  S+  L+L  N L  +    ++         + SL+   N  + +            
Sbjct: 135 NLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASI 194

Query: 351 LRSLEVLAIGRCNFSGR----IPSSLR-NLTQLITLDLSQN--SYRGTMELDFLLVSLKN 403
             S+  L +       +    +          +++L+L  N         L  L  SLK+
Sbjct: 195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKH 254

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
           L+ + L  + +  ++K                            N   ++L+D +   IH
Sbjct: 255 LQTVYLDYDIVKNMSKEQ-----------------CKALGAAFPNIQKIILVDKNGKEIH 297

Query: 464 ---GKIPSWLLDPSTQNLSALNLSHNLLT--GFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
                  S L+   +      +L +  L      Q  +        L     +   L 
Sbjct: 298 PSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLNIPDELRESIQTCKPLL 355

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 56.3 bits (136), Expect = 2e-08
 Identities = 54/303 (17%), Positives = 105/303 (34%), Gaps = 51/303 (16%)

Query: 246 IQSSLGNLSKLLHLDLSLNELLGELPVSIG-----NLHSLKKLDLSINNLSGELPTSI-- 298
           ++        +  LDLSLN L     V +         S+  L+LS N+L  +    +  
Sbjct: 14  VEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQ 73

Query: 299 ---QNLVSLEELDLSFNKLSGEFPWSIV---IGNFTQLQSLDFTSNKFSGELHASIGNL- 351
                  ++  L+LS N LS +    +V         +  LD   N FS +  +      
Sbjct: 74  ILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAF 133

Query: 352 ----RSLEVLAIGRCNFSGR----IPSSLRNL-TQLITLDLSQNS--YRGTMEL-DFLLV 399
                S+  L +   +   +    +   L  +   + +L+L  N+   +   EL  FL  
Sbjct: 134 SNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLAS 193

Query: 400 SLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSS 459
              ++  L LS+N                  +       L     F    +H++ L+L  
Sbjct: 194 IPASVTSLDLSAN---------------LLGLKSYAE--LAYI--FSSIPNHVVSLNLCL 234

Query: 460 NRIHGKIPSWLLD--PSTQNLSALNLSHNLLTGFD----QQLVVLPGGKRFLLTLDLSSN 513
           N +HG     L     S ++L  + L ++++        + L       + ++ +D +  
Sbjct: 235 NCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGK 294

Query: 514 NLQ 516
            + 
Sbjct: 295 EIH 297

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 53.2 bits (128), Expect = 2e-07
 Identities = 59/298 (19%), Positives = 100/298 (33%), Gaps = 51/298 (17%)

Query: 372 LRNLTQLITLDLSQN--SYRGTMEL-DFLLVSLKNLEVLSLSSNWLS-----LLTKVTSN 423
                 + +LDLS N      T+EL      +  ++  L+LS N L       L ++ + 
Sbjct: 18  TSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAA 77

Query: 424 TTSQKFTVVGLRSCNL-----IEFPNFLKNQH-HLMLLDLSSNRIHGKIPSWL---LDPS 474
             +   T + L    L      E    L      + +LDL  N    K  S         
Sbjct: 78  IPA-NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 475 TQNLSALNLSHNLLTGFDQQLV--VLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS 532
             ++++LNL  N L       +  +L      + +L+L  NNL        S+    L  
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA-------SKNCAELAK 189

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLS----GLLPRCLGSFSDKLSILDLRANNFFGT 588
              F+  IP+      S+  L LS N L       L     S  + +  L+L  N   G 
Sbjct: 190 ---FLASIPA------SVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGP 240

Query: 589 ----IPNTFMKESRLGMIDLSHNLFQG-------RIPRSLINCSKLEFLDIGDNQIRD 635
               +         L  + L +++ +         +  +  N  K+  +D    +I  
Sbjct: 241 SLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 50.9 bits (122), Expect = 1e-06
 Identities = 53/284 (18%), Positives = 98/284 (34%), Gaps = 49/284 (17%)

Query: 445 FLKNQHHLMLLDLSSNRIHGKIPSWL---LDPSTQNLSALNLSHNLLT--GFDQQLVVLP 499
           F    H +  LDLS N ++      L      +  ++++LNLS N L     D+ + +L 
Sbjct: 17  FTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILA 76

Query: 500 GGKRFLLTLDLSSNNLQ-------GPLPVPPSRTVNYLV-SNNSFIGEIPSWLCKL---- 547
                + +L+LS N L                 T+  L    N F  +  S   +     
Sbjct: 77  AIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 548 -DSLEILVLSHNNLSG----LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKE------ 596
             S+  L L  N+L       L + L +    ++ L+LR NN    + +    E      
Sbjct: 137 PASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNN----LASKNCAELAKFLA 192

Query: 597 ---SRLGMIDLSHNLFQGRIPRSLI-----NCSKLEFLDIGDNQIRD----IFPSWLGTL 644
              + +  +DLS NL   +    L        + +  L++  N +             +L
Sbjct: 193 SIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSL 252

Query: 645 PNLTVLILQSNKFYGIIREPRID-----CGFSKLRIIDLSNNRF 683
            +L  + L  +    + +E             K+ ++D +    
Sbjct: 253 KHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 58.2 bits (141), Expect = 5e-10
 Identities = 43/159 (27%), Positives = 68/159 (42%), Gaps = 8/159 (5%)

Query: 186 NSGYGLELQKPNFANLVEK-LSNLETLDL-GYVSIRSTIPHNLANLSSLTFLSLHSCGLQ 243
           +   G+++++     L  +  + +  L L    S    I    A   +L FLSL + GL 
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI 62

Query: 244 GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLS--GELPTSIQNL 301
             + S+L  L KL  L+LS N + G L +    L +L  L+LS N L     L   ++ L
Sbjct: 63  -SV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKL 119

Query: 302 VSLEELDLSFNKLSGEFP-WSIVIGNFTQLQSLDFTSNK 339
             L+ LDL   +++        V     QL  LD    +
Sbjct: 120 ECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDRE 158

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 43.2 bits (102), Expect = 9e-05
 Identities = 22/109 (20%), Positives = 42/109 (38%), Gaps = 5/109 (4%)

Query: 723 EVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNN 782
            V         +N G+I         L  + L +     +  +++  L  L+ L L  N 
Sbjct: 25  AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENR 82

Query: 783 LQGHIPSCLGNLTNLESLDLSNNNF--LGQIPQQLVELTFLEFFNVSDN 829
           + G +      L NL  L+LS N    +  + + L +L  L+  ++ + 
Sbjct: 83  IFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 32/128 (25%), Positives = 51/128 (39%), Gaps = 11/128 (8%)

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFSDKLSILDLRANNFF 586
            L +  S  G+I     +  +LE L L +  L  +  LP+       KL  L+L  N  F
Sbjct: 30  VLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISVSNLPKL-----PKLKKLELSENRIF 84

Query: 587 GTIPNTFMKESRLGMIDLSHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIFPSW---LG 642
           G +     K   L  ++LS N  +       L     L+ LD+ + ++ ++         
Sbjct: 85  GGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFK 144

Query: 643 TLPNLTVL 650
            LP LT L
Sbjct: 145 LLPQLTYL 152

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 20/83 (24%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           +D   +   G+I         LEFL + +  +  +  S L  LP L  L L  N+ +G  
Sbjct: 31  LDNCKSN-DGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGG- 86

Query: 662 REPRIDCGFSKLRIIDLSNNRFT 684
               +      L  ++LS N+  
Sbjct: 87  -LDMLAEKLPNLTHLNLSGNKLK 108

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 41.3 bits (97), Expect = 3e-04
 Identities = 26/107 (24%), Positives = 43/107 (40%), Gaps = 8/107 (7%)

Query: 577 ILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI 636
           +LD   +N  G I     +   L  + L +      +  +L    KL+ L++ +N+I   
Sbjct: 30  VLDNCKSND-GKIEGLTAEFVNLEFLSLINVGLI-SVS-NLPKLPKLKKLELSENRIFGG 86

Query: 637 FPSWLGTLPNLTVLILQSNKFYGIIREPRIDC--GFSKLRIIDLSNN 681
                  LPNLT L L  NK   +     ++       L+ +DL N 
Sbjct: 87  LDMLAEKLPNLTHLNLSGNK---LKDISTLEPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 26/104 (25%), Positives = 45/104 (43%), Gaps = 3/104 (2%)

Query: 730 SLKMNNKGQIMTYDKVPDILTSIILSSNRFD-GMIPTSIANLKGLQVLNLDNNNLQGHIP 788
            + M  +  +   ++ P  +  ++L + + + G I    A    L+ L+L N  L   + 
Sbjct: 7   GMDMKRRIHLELRNRTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI-SV- 64

Query: 789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT 832
           S L  L  L+ L+LS N   G +     +L  L   N+S N L 
Sbjct: 65  SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLK 108

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 61.5 bits (149), Expect = 7e-10
 Identities = 45/323 (13%), Positives = 100/323 (30%), Gaps = 32/323 (9%)

Query: 106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF 165
           + + +  +   +    +   L      +L   D    E    ++   +L  L LS+    
Sbjct: 225 VKVGDFEILELVGFFKAAANLEEFCGGSL-NEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHN 225
             +P        +  LDL        +        L++K  NLE L+   V     +   
Sbjct: 284 E-MPILFPFAAQIRKLDLLYALLETEDHCT-----LIQKCPNLEVLETRNVIGDRGLEVL 337

Query: 226 LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDL 285
                 L  L +     +  ++   G +S        L  L             L+ + +
Sbjct: 338 AQYCKQLKRLRIERGADEQGMEDEEGLVS-----QRGLIALAQ-------GCQELEYMAV 385

Query: 286 SINNLSGE----LPTSIQNLVSLEELDLS----FNKLSGEFPWSIVIGNFTQLQSLDFTS 337
            +++++ E    + T ++NL     + L        L  +     ++    +L+   F  
Sbjct: 386 YVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYL 445

Query: 338 N--KFSGELHASIG-NLRSLEVLAIGRCNFSGR-IPSSLRNLTQLITLDLSQNSYRGTME 393
                +    + IG    ++  + +G    S   +    R    L  L++    +     
Sbjct: 446 RQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCF-SERA 504

Query: 394 LDFLLVSLKNLEVLSLSSNWLSL 416
           +   +  L +L  L +     S+
Sbjct: 505 IAAAVTKLPSLRYLWVQGYRASM 527

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 54.9 bits (132), Expect = 8e-08
 Identities = 79/556 (14%), Positives = 147/556 (26%), Gaps = 91/556 (16%)

Query: 120 SSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLV 179
               FK+      ++      ++           L  L L                    
Sbjct: 41  CRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAA------------- 87

Query: 180 SLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA--NLSSLTFLSL 237
               +L          P    +   L  L+++    + +       LA      L  L L
Sbjct: 88  --MFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145

Query: 238 HSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTS 297
             C             +        L  ++        +   +K L +  ++ S +    
Sbjct: 146 DKCS----------GFT-----TDGLLSIVT-------HCRKIKTLLMEESSFSEKDGKW 183

Query: 298 I----QNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDFTSNKFSGELHASIGNL 351
           +    Q+  SLE L+    + +   P  +  +  N   L S+    +    EL       
Sbjct: 184 LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKV-GDFEILELVGFFKAA 242

Query: 352 RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSS 411
            +LE    G  N    +P    NL     L     SY G  E+  L      +  L L  
Sbjct: 243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLY 302

Query: 412 NWLSLLTKVTSNTTSQKFTVVGLRSC-NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL 470
             L      T         V+  R+           +    L  L +             
Sbjct: 303 ALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGA--------- 353

Query: 471 LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL 530
                 +   +     L++   + L+ L  G + L  + +  ++                
Sbjct: 354 ------DEQGMEDEEGLVS--QRGLIALAQGCQELEYMAVYVSD---------------- 389

Query: 531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP-----RCLGSFSDKLSILDLRANNF 585
           ++N S    I ++L  L    +++L        LP     R L     KL          
Sbjct: 390 ITNESLE-SIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQG 448

Query: 586 FGT---IPNTFMKESRLGMIDLSHNLFQGRIPRSLI-NCSKLEFLDIGDNQIRDIFPSWL 641
             T   +         +  + L +              C  L+ L++      +   +  
Sbjct: 449 GLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAA 508

Query: 642 GT-LPNLTVLILQSNK 656
            T LP+L  L +Q  +
Sbjct: 509 VTKLPSLRYLWVQGYR 524

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 52.6 bits (126), Expect = 5e-07
 Identities = 42/301 (13%), Positives = 86/301 (28%), Gaps = 26/301 (8%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
           KL        G             +  L+L +   ++ +  + I     L  L   +   
Sbjct: 271 KLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIG 330

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPN------FANLVEKLSNLETLDLGYVSI 218
              +         L  L +   +       +           L +    LE + +    I
Sbjct: 331 DRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDI 390

Query: 219 R----STIPHNLANLSSLTFLSLHSC------GLQGRIQSSLGNLSKLLHLDLSLN-ELL 267
                 +I   L NL     + L          L   ++S L    KL      L    L
Sbjct: 391 TNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGL 450

Query: 268 GELPVSI--GNLHSLKKLDLSINNLSGE-LPTSIQNLVSLEELDLSFNKLSGEFPWSIVI 324
            +L +S       +++ + L     S E L    +   +L++L++     S     + V 
Sbjct: 451 TDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV- 509

Query: 325 GNFTQLQSLDFTSNKFS---GELHASIGNLRSLEVLAIGRCNFSGR--IPSSLRNLTQLI 379
                L+ L     + S    +L        ++E++   R     +      + +   ++
Sbjct: 510 TKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHIL 569

Query: 380 T 380
            
Sbjct: 570 A 570

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 58.2 bits (141), Expect = 1e-09
 Identities = 35/149 (23%), Positives = 66/149 (44%), Gaps = 21/149 (14%)

Query: 203 EKLSNLETLDLGYVSIR--STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLD 260
              +  E ++L +  I     +   L+ L +   L+L +  ++ +I SSL  +  L  L 
Sbjct: 20  VVATEAEKVEL-HGMIPPIEKMDATLSTLKACKHLALSTNNIE-KI-SSLSGMENLRILS 76

Query: 261 LSLNELLGELPVSIGNLH----SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG 316
           L  N +       I NL     +L++L +S N ++  L + I+ LV+L  L +S NK++ 
Sbjct: 77  LGRNLI-----KKIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITN 129

Query: 317 EFPWSIV--IGNFTQLQSLDFTSNKFSGE 343
              W  +  +    +L+ L    N    +
Sbjct: 130 ---WGEIDKLAALDKLEDLLLAGNPLYND 155

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 33/138 (23%), Positives = 52/138 (37%), Gaps = 23/138 (16%)

Query: 537 IGEIPSWLCKLDSLEILVLSHN------NLSGLLPRCLGSFSDKLSILDLRANNFFGTIP 590
           I ++ + L  L + + L LS N      +LSG+         + L IL L   N    I 
Sbjct: 37  IEKMDATLSTLKACKHLALSTNNIEKISSLSGM---------ENLRILSL-GRNLIKKIE 86

Query: 591 NTFMKESRLGMIDLSHNLFQGRIPR--SLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNL 647
           N       L  + +S+N    +I     +     L  L + +N+I +      L  L  L
Sbjct: 87  NLDAVADTLEELWISYN----QIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKL 142

Query: 648 TVLILQSNKFYGIIREPR 665
             L+L  N  Y   +E  
Sbjct: 143 EDLLLAGNPLYNDYKENN 160

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 27/140 (19%), Positives = 56/140 (40%), Gaps = 8/140 (5%)

Query: 367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTS 426
           ++ ++L  L     L LS N+      L      ++NL +LSL  N +  +  + +   +
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKISSLS----GMENLRILSLGRNLIKKIENLDAVADT 94

Query: 427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
            +   +   S N I   + ++   +L +L +S+N+I        L      L  L L+ N
Sbjct: 95  LEELWI---SYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD-KLEDLLLAGN 150

Query: 487 LLTGFDQQLVVLPGGKRFLL 506
            L    ++       +  ++
Sbjct: 151 PLYNDYKENNATSEYRIEVV 170

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.5 bits (103), Expect = 9e-05
 Identities = 31/142 (21%), Positives = 58/142 (40%), Gaps = 14/142 (9%)

Query: 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVG 433
             T+   ++L         ++D  L +LK  + L+LS+N    + K++S +  +   ++ 
Sbjct: 21  VATEAEKVELH-GMIPPIEKMDATLSTLKACKHLALSTN---NIEKISSLSGMENLRILS 76

Query: 434 LRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD- 492
           L    + +  N       L  L +S N+I   +          NL  L +S+N +T +  
Sbjct: 77  LGRNLIKKIENLDAVADTLEELWISYNQIA-SLSGI---EKLVNLRVLYMSNNKITNWGE 132

Query: 493 -QQLVVLPGGKRFLLTLDLSSN 513
             +L  L      L  L L+ N
Sbjct: 133 IDKLAALD----KLEDLLLAGN 150

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 10/105 (9%)

Query: 612 RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671
           ++  +L      + L +  N I  I  S L  + NL +L L  N    I     +D    
Sbjct: 39  KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIKKI---ENLDAVAD 93

Query: 672 KLRIIDLSNNRFT-----GKLPSKSFLCWNAMKIVNTSDLKYLQD 711
            L  + +S N+        KL +   L  +  KI N  ++  L  
Sbjct: 94  TLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 57.7 bits (140), Expect = 4e-09
 Identities = 46/168 (27%), Positives = 77/168 (45%), Gaps = 15/168 (8%)

Query: 125 KLVHLEWLNLAFNDFKSSEIPSEIIN-LSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLD 182
           +L  L  L L  N  ++  +P+ I   L  L  L ++ +     +P  + + LVNL  L 
Sbjct: 59  RLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWVTDNK-LQALPIGVFDQLVNLAELR 115

Query: 183 LSLNSGYGLELQK-PNFANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLTFLSLHSC 240
           L  N     +L+  P    + + L+ L  L LGY  ++S +P  +   L+SL  L L++ 
Sbjct: 116 LDRN-----QLKSLP--PRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNN 167

Query: 241 GLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSIN 288
            L+   + +   L++L  L L  N+L      +  +L  LK L L  N
Sbjct: 168 QLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 56.9 bits (138), Expect = 6e-09
 Identities = 55/198 (27%), Positives = 83/198 (41%), Gaps = 21/198 (10%)

Query: 127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEIL-ELVNLVSLDLSL 185
              + L+L  N   S         L++L  L L+ +     +P+ I  EL NL +L ++ 
Sbjct: 37  ADTKKLDLQSNKLSSLP-SKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTD 94

Query: 186 NSGYGLELQK-PNFANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLSSLTFLSLHSCGLQ 243
           N      LQ  P    + ++L NL  L L    ++S +P  +  +L+ LT+LSL    LQ
Sbjct: 95  NK-----LQALP--IGVFDQLVNLAELRLDRNQLKS-LPPRVFDSLTKLTYLSLGYNELQ 146

Query: 244 GRIQSSLGNLSKLLHLDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLV 302
              +     L+ L  L L  N+L   +P      L  LK L L  N L      +  +L 
Sbjct: 147 SLPKGVFDKLTSLKELRLYNNQL-KRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLE 205

Query: 303 SLEELDLSFNKLSGEFPW 320
            L+ L L  N      PW
Sbjct: 206 KLKMLQLQEN------PW 217

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.5 bits (124), Expect = 4e-07
 Identities = 44/208 (21%), Positives = 74/208 (35%), Gaps = 40/208 (19%)

Query: 603 DLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR 662
           DL  N       ++    +KL  L + DN+++ +       L NL  L +  NK   +  
Sbjct: 43  DLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQAL-- 100

Query: 663 EPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSD 722
              +      L  + L  N+    LP + F         + + L YL             
Sbjct: 101 PIGVFDQLVNLAELRLDRNQLK-SLPPRVF--------DSLTKLTYL------------- 138

Query: 723 EVATYDYSLKMNNKGQIMT-----YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLN 777
                  SL  N   ++ +     +DK+   L  + L +N+   +   +   L  L+ L 
Sbjct: 139 -------SLGYN---ELQSLPKGVFDKLTS-LKELRLYNNQLKRVPEGAFDKLTELKTLK 187

Query: 778 LDNNNLQGHIPSCLGNLTNLESLDLSNN 805
           LDNN L+        +L  L+ L L  N
Sbjct: 188 LDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 48.8 bits (117), Expect = 3e-06
 Identities = 43/148 (29%), Positives = 60/148 (40%), Gaps = 22/148 (14%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDF 335
             KKLDL  N LS     +   L  L  L L+ NKL      ++  G F     L++L  
Sbjct: 38  DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-----TLPAGIFKELKNLETLWV 92

Query: 336 TSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPSSL-RNLTQLITLDLSQNSYRGTME 393
           T NK    L   +   L +L  L + R      +P  +  +LT+L  L L  N      E
Sbjct: 93  TDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYN------E 144

Query: 394 LDFLLV----SLKNLEVLSLSSNWLSLL 417
           L  L       L +L+ L L +N L  +
Sbjct: 145 LQSLPKGVFDKLTSLKELRLYNNQLKRV 172

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 44.2 bits (105), Expect = 9e-05
 Identities = 33/146 (22%), Positives = 55/146 (37%), Gaps = 8/146 (5%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSH 606
             + L L  N LS L      +F    KL +L L  N         F +   L  + ++ 
Sbjct: 38  DTKKLDLQSNKLSSLPS---KAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94

Query: 607 NLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI 666
           N  Q            L  L +  NQ++ + P    +L  LT L L  N+   +     +
Sbjct: 95  NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL--PKGV 152

Query: 667 DCGFSKLRIIDLSNNRFTGKLPSKSF 692
               + L+ + L NN+   ++P  +F
Sbjct: 153 FDKLTSLKELRLYNNQLK-RVPEGAF 177

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 42.7 bits (101), Expect = 3e-04
 Identities = 54/234 (23%), Positives = 78/234 (33%), Gaps = 67/234 (28%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRF-----LLTLD 509
           LDL SN++   +PS      T  L  L L+ N       +L  LP G  F     L TL 
Sbjct: 42  LDLQSNKL-SSLPSKAFHRLT-KLRLLYLNDN-------KLQTLPAGI-FKELKNLETLW 91

Query: 510 LSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLG 569
           ++ N LQ              +    F          L +L  L L  N L  L P    
Sbjct: 92  VTDNKLQA-------------LPIGVFDQ--------LVNLAELRLDRNQLKSLPP---R 127

Query: 570 SFSD--KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD 627
            F    KL+ L L  N                    L   +F       L   + L+ L 
Sbjct: 128 VFDSLTKLTYLSLGYNEL----------------QSLPKGVF-----DKL---TSLKELR 163

Query: 628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
           + +NQ++ +       L  L  L L +N+   +           KL+++ L  N
Sbjct: 164 LYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEG--AFDSLEKLKMLQLQEN 215

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 24/117 (20%), Positives = 39/117 (33%), Gaps = 10/117 (8%)

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL- 283
              N      L L    +   I++    L +   +D S NE+       +     L++L 
Sbjct: 14  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEI-----RKLDGFPLLRRLK 67

Query: 284 --DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
              ++ N +        Q L  L EL L+ N L  E      + +   L  L    N
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 50.4 bits (121), Expect = 3e-07
 Identities = 31/141 (21%), Positives = 52/141 (36%), Gaps = 9/141 (6%)

Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
                   LDL    I   I +  A L     +      ++ ++      L +L  L ++
Sbjct: 16  TNAVRDRELDLRGYKI-PVIENLGATLDQFDAIDFSDNEIR-KL-DGFPLLRRLKTLLVN 72

Query: 263 LNELLGELPVSIGNLHSLKKLDLSINNLS--GELPTSIQNLVSLEELDLSFNKLSGEFP- 319
            N +          L  L +L L+ N+L   G+L   + +L SL  L +  N ++     
Sbjct: 73  NNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT-NKKH 130

Query: 320 -WSIVIGNFTQLQSLDFTSNK 339
               VI    Q++ LDF   K
Sbjct: 131 YRLYVIYKVPQVRVLDFQKVK 151

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 29/116 (25%), Positives = 43/116 (37%), Gaps = 14/116 (12%)

Query: 574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPR--SLINCSKLEFLDIGDN 631
           +   LDLR       I N      +   ID S N     I +        +L+ L + +N
Sbjct: 20  RDRELDLR-GYKIPVIENLGATLDQFDAIDFSDN----EIRKLDGFPLLRRLKTLLVNNN 74

Query: 632 QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR-IDC--GFSKLRIIDLSNNRFT 684
           +I  I       LP+LT LIL +N     + E   +D       L  + +  N  T
Sbjct: 75  RICRIGEGLDQALPDLTELILTNNS----LVELGDLDPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 17/65 (26%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 767 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF--LGQIPQQLVELTFLEFF 824
              L+ L+ L ++NN +          L +L  L L+NN+   LG +   L  L  L + 
Sbjct: 60  FPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSLTYL 118

Query: 825 NVSDN 829
            +  N
Sbjct: 119 CILRN 123

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 57.3 bits (137), Expect = 1e-08
 Identities = 32/291 (10%), Positives = 80/291 (27%), Gaps = 34/291 (11%)

Query: 45  ALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVM 104
              +    LI   T +         +      A       +      + ++       + 
Sbjct: 48  EAEKAAGKLIAEKTKKGYVETLEEVAKEMKVEAKKYALSYDEAEEGVNLMDKILKDKKLP 107

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            L    +                 +      F  F+             +S++       
Sbjct: 108 SLK-QITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQ----- 161

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
              +   +  +  L +L +   +   +  +            NL++L++    +  ++  
Sbjct: 162 -VDLSPVLDAMPLLNNLKIKGTNNLSIGKKP---------RPNLKSLEIISGGLPDSVVE 211

Query: 225 NLA--NLSSLTFLSLHSCGLQGRIQSSLGNLSKLL---------HLDLSLNELLGELPVS 273
           ++   +L +L  L L+           +     L           L +   E    +   
Sbjct: 212 DILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEM 271

Query: 274 IGN---LHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGE 317
                 L  L+ +D+S   L+ E    L   +  +  L+ +++ +N LS E
Sbjct: 272 FLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDE 322

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 51.5 bits (122), Expect = 6e-07
 Identities = 25/153 (16%), Positives = 54/153 (35%), Gaps = 14/153 (9%)

Query: 277 LHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD-- 334
           L ++  L+      +  L    +   +L+ L++    L       I+  +   L+ L   
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 335 FTSNKFSGELHASI-------GNLRSLEVLAIGRCNFSGRIPSSL---RNLTQLITLDLS 384
                +  +   ++           +L+ L I        +         L QL T+D+S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 385 QNSY--RGTMELDFLLVSLKNLEVLSLSSNWLS 415
                  G   L   +  +K+L+ +++  N+LS
Sbjct: 288 AGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.3 bits (119), Expect = 1e-06
 Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 15/164 (9%)

Query: 199 ANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLH--SCGLQGRIQSSLGNLSKL 256
           + +++ +  L  L +   +  S       NL SL  +S       ++  + S L NL KL
Sbjct: 165 SPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKL 224

Query: 257 LHLDLSLNELLGELPVSI-------GNLHSLKKLDLSINNLSGELPTSI---QNLVSLEE 306
             L + + +   +  +++           +LK L +        +         L  LE 
Sbjct: 225 -VLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLET 283

Query: 307 LDLSFNKLSGEFPWSIV--IGNFTQLQSLDFTSNKFSGELHASI 348
           +D+S   L+ E    ++  +     L+ ++   N  S E+   +
Sbjct: 284 MDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKEL 327

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 43.0 bits (100), Expect = 3e-04
 Identities = 14/71 (19%), Positives = 28/71 (39%), Gaps = 7/71 (9%)

Query: 769 NLKGLQVLNLDNNNLQGHIPSCLGN---LTNLESLDLSNNNF----LGQIPQQLVELTFL 821
               L+ L + +   Q  +         L  LE++D+S           +   + ++  L
Sbjct: 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHL 309

Query: 822 EFFNVSDNYLT 832
           +F N+  NYL+
Sbjct: 310 KFINMKYNYLS 320

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 42.2 bits (98), Expect = 5e-04
 Identities = 7/76 (9%), Positives = 28/76 (36%), Gaps = 7/76 (9%)

Query: 749 LTSIILSSNRFDGMIPTSIAN---LKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLD 801
           L  + +       ++         L  L+ +++    L       +   +  + +L+ ++
Sbjct: 254 LKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFIN 313

Query: 802 LSNNNFLGQIPQQLVE 817
           +  N    ++ ++L +
Sbjct: 314 MKYNYLSDEMKKELQK 329

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 56.0 bits (135), Expect = 2e-08
 Identities = 54/254 (21%), Positives = 100/254 (39%), Gaps = 19/254 (7%)

Query: 204 KLSNLETLDLGYVSI-RSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
               ++ +DL    I  ST+   L+  S L  LSL    L   I ++L   S L+ L+LS
Sbjct: 91  SPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLS 150

Query: 263 LNELLGELPVS--IGNLHSLKKLDLS-INNLSGELPTSI--QNLVSLEELDLS-FNKLSG 316
                 E  +   + +   L +L+LS   + + +           ++ +L+LS + K   
Sbjct: 151 GCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQ 210

Query: 317 EFPWSIVIGNFTQLQSLDFTS-NKFSGELHASIGNLRSLEVLAIGRC-NFSGRIPSSLRN 374
           +   S ++     L  LD +       +       L  L+ L++ RC +        L  
Sbjct: 211 KSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGE 270

Query: 375 LTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFT--VV 432
           +  L TL +      GT++L  L  +L +L++        S  T +   T   K    + 
Sbjct: 271 IPTLKTLQVFGIVPDGTLQL--LKEALPHLQIN------CSHFTTIARPTIGNKKNQEIW 322

Query: 433 GLRSCNLIEFPNFL 446
           G++    ++ P+ L
Sbjct: 323 GIKCRLTLQKPSCL 336

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 38/207 (18%), Positives = 80/207 (38%), Gaps = 12/207 (5%)

Query: 112 CLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSE 171
                    +  F    ++ ++L+ +  + S +   +   S+L  L+L        I + 
Sbjct: 78  PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNT 137

Query: 172 ILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGY------VSIRSTIPHN 225
           + +  NLV L+LS  SG      +     L+   S L+ L+L +        ++  + H 
Sbjct: 138 LAKNSNLVRLNLSGCSG----FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHV 193

Query: 226 LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPV-SIGNLHSLKKLD 284
              ++ L          +  + + +     L+HLDLS + +L          L+ L+ L 
Sbjct: 194 SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLS 253

Query: 285 LS-INNLSGELPTSIQNLVSLEELDLS 310
           LS   ++  E    +  + +L+ L + 
Sbjct: 254 LSRCYDIIPETLLELGEIPTLKTLQVF 280

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 54.7 bits (132), Expect = 6e-08
 Identities = 53/290 (18%), Positives = 92/290 (31%), Gaps = 39/290 (13%)

Query: 229 LSSLTFLSLHSCGLQGRIQSSLG-----NLSKLLHLDLSLNELLGE-----LPVSIGNLH 278
           LSSL  L+L    +     + +          L  ++L+  +L        LPV      
Sbjct: 71  LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPV----FL 126

Query: 279 SLKKLDLSINNLSGELPTSI-----QNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQ 331
             +KL L +N+L  E    +      +   +  L LS N L+      +   +   T + 
Sbjct: 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVT 186

Query: 332 SLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDL 383
            L         E    L A +   R L+ L +            +  + R    L  L L
Sbjct: 187 HLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHL 246

Query: 384 SQN--SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
             N  S  G   L  L  + +    + +S    + +++  S   S+       R+ N  +
Sbjct: 247 YFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSEYWSVILSE-----VQRNLNSWD 301

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQN--LSALNLSHNLLT 489
                ++   L+L DL  +R     P            + AL        
Sbjct: 302 RARVQRHL-ELLLRDLEDSRGATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 48.2 bits (115), Expect = 8e-06
 Identities = 53/329 (16%), Positives = 91/329 (27%), Gaps = 60/329 (18%)

Query: 112 CLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSE 171
             Y   N   S   L  L  LNLA       +        + ++ + L            
Sbjct: 57  FHYEFQNQRFSAEVLSSLRQLNLAGVRMTPVKC-------TVVAAV-LGSGRH------- 101

Query: 172 ILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA---- 227
                 L  ++L+        L       L+        L L   S+      +L     
Sbjct: 102 -----ALDEVNLASCQ-----LDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151

Query: 228 -NLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNEL----LGELPVSIGNLH 278
            +   +T L L +  L       +   L   + + HL L    L    L  L   +    
Sbjct: 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNR 211

Query: 279 SLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWSI-----VIGNFTQ 329
            L++L+++ N         L  + +   SLE L L FN+LS E    +           +
Sbjct: 212 QLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGAR 271

Query: 330 LQSLDFTSNKFSGELHASIGN-LRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN-- 386
           +          S      +    R+L      R          ++   +L+  DL  +  
Sbjct: 272 VVVSLTEGTAVSEYWSVILSEVQRNLNSWDRAR----------VQRHLELLLRDLEDSRG 321

Query: 387 SYRGTMELDFLLVSLKNLEVLSLSSNWLS 415
           +         LL     +  L        
Sbjct: 322 ATLNPWRKAQLLRVEGEVRALLEQLGSSG 350

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 1e-07
 Identities = 47/152 (30%), Positives = 71/152 (46%), Gaps = 12/152 (7%)

Query: 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
           E LDL    + +        L+ LT+L+L    LQ        +L++L  L L+ N+ L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQ-LA 96

Query: 269 ELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGN 326
            LP+ +  +L  L KL L  N L   LP+ +   L  L+EL L+ N+L      SI  G 
Sbjct: 97  SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQ-----SIPAGA 150

Query: 327 F---TQLQSLDFTSNKFSGELHASIGNLRSLE 355
           F   T LQ+L  ++N+     H +   L  L+
Sbjct: 151 FDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQ 182

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 47.4 bits (113), Expect = 9e-06
 Identities = 54/201 (26%), Positives = 81/201 (40%), Gaps = 44/201 (21%)

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI-G 275
           S+ S IP      +    L L S GL     ++   L+KL  L+L  N+L   L   +  
Sbjct: 28  SVPSGIP------ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFD 80

Query: 276 NLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQ 331
           +L  L  L L+ N L+  LP  +  +L  L++L L  N+L      S+  G F   T+L+
Sbjct: 81  DLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-----SLPSGVFDRLTKLK 134

Query: 332 SLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGT 391
            L   +N+           L+S+   A                LT L TL LS N  +  
Sbjct: 135 ELRLNTNQ-----------LQSIPAGA-------------FDKLTNLQTLSLSTNQLQSV 170

Query: 392 MELDFLLVSLKNLEVLSLSSN 412
               F    L  L+ ++L  N
Sbjct: 171 PHGAF--DRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.6 bits (98), Expect = 5e-04
 Identities = 44/164 (26%), Positives = 77/164 (46%), Gaps = 17/164 (10%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIIN-LSRLSYLNLSHSS 163
           KLDL ++ L  +  S ++   L  L WLNL +N  ++  + + + + L+ L  L L+++ 
Sbjct: 39  KLDLQSTGL--ATLSDATFRGLTKLTWLNLDYNQLQT--LSAGVFDDLTELGTLGLANNQ 94

Query: 164 FFGQIPSEIL-ELVNLVSLDLSLNSGYGLELQK-PNFANLVEKLSNLETLDLGYVSIRST 221
               +P  +   L  L  L L  N     +L+  P  + + ++L+ L+ L L    ++S 
Sbjct: 95  L-ASLPLGVFDHLTQLDKLYLGGN-----QLKSLP--SGVFDRLTKLKELRLNTNQLQS- 145

Query: 222 IPHNL-ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN 264
           IP      L++L  LSL +  LQ     +   L KL  + L  N
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 44/180 (24%), Positives = 66/180 (36%), Gaps = 20/180 (11%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
           S IP++   L  L    L+  S      +    L  L  L+L  N    L       A +
Sbjct: 31  SGIPADTEKL-DLQSTGLATLS-----DATFRGLTKLTWLNLDYNQLQTLS------AGV 78

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
            + L+ L TL L    + S       +L+ L  L L    L+         L+KL  L L
Sbjct: 79  FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRL 138

Query: 262 SLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPW 320
           + N+L   +P      L +L+ L LS N L      +   L  L+ + L  N       +
Sbjct: 139 NTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN------QF 191

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 2e-07
 Identities = 73/450 (16%), Positives = 144/450 (32%), Gaps = 105/450 (23%)

Query: 357 LAIGRCNFSGRIPSSLRNLTQLITLDLSQN---SYRGTMELDFLLVSLKNLEVLSLSSNW 413
           L +  CN    +   L+ L   I  + +     S    + +  +   L+ L       N 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENC 246

Query: 414 LSLLTKVTSNTTSQKF-----TVVGLRSCNLIEFPNFLKNQHHLM-----------LLDL 457
           L +L  V +      F      ++  R   + +F +     H  +           +  L
Sbjct: 247 LLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSL 306

Query: 458 SSNRIH---GKIPSWLLD--PSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS 512
               +      +P  +L   P   ++ A ++   L T +D    V     +    ++ S 
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WDNWKHV--NCDKLTTIIESSL 363

Query: 513 NNLQGP---------LPV-PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
           N L+ P         L V PPS   +           IP+       L ++         
Sbjct: 364 NVLE-PAEYRKMFDRLSVFPPS--AH-----------IPT-----ILLSLI------WFD 398

Query: 563 LLPRCLGSFSDKL---SILDLRANNFFGTIPNTFM--KESRLGMIDLSHNLFQGRIPRSL 617
           ++   +    +KL   S+++ +      +IP+ ++  K        L H        RS+
Sbjct: 399 VIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-H--------RSI 449

Query: 618 INC----SKLEFLDIGDNQIRDIFPSWLGT-LPNLTVLILQSNKFYGIIREPRIDCGFSK 672
           ++        +  D+    +   F S +G  L N    I    +             F  
Sbjct: 450 VDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKN----IEHPERMT----------LFRM 495

Query: 673 LRIIDLSNNRF-TGKLPSKSFLCWNAMKIVNT-SDLKYLQDVISPKEWLLSDEVATY-DY 729
           +  +D    RF   K+   S     +  I+NT   LK+ +  I   +      V    D+
Sbjct: 496 V-FLDF---RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDF 551

Query: 730 SLKMNNKGQIMTYDKVPDILTSIILSSNRF 759
             K+    + +   K  D+L   +++ +  
Sbjct: 552 LPKI---EENLICSKYTDLLRIALMAEDEA 578

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 48.7 bits (115), Expect = 1e-05
 Identities = 86/559 (15%), Positives = 155/559 (27%), Gaps = 143/559 (25%)

Query: 130 EWLNLAF-NDFKSSEIPSEIIN--LSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLN 186
           ++L      + +   + + +      RL   N   + +        L+L   +   L L 
Sbjct: 92  KFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQAL---LELR 148

Query: 187 SGYGLELQ------KPNFANLVEKLSNLET--------LDLGYVSIRSTIPHNLANL--- 229
               + +       K   A  V     ++         L+L   +   T+   L  L   
Sbjct: 149 PAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQ 208

Query: 230 --SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPV--SIGNLHSLKKLDL 285
              + T  S HS  ++ RI S    L +LL      N LL    V  ++ N  +    +L
Sbjct: 209 IDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLL----VLLNVQNAKAWNAFNL 264

Query: 286 S------------INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSL 333
           S             + LS    T     +SL+   ++                 T  +  
Sbjct: 265 SCKILLTTRFKQVTDFLSAATTTH----ISLDHHSMT----------------LTPDEVK 304

Query: 334 DFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME 393
                     L     +L   EVL       S  I  S+R+   L T D  +  +    +
Sbjct: 305 SL----LLKYLDCRPQDLPR-EVLTTNPRRLSI-IAESIRD--GLATWDNWK--HVNCDK 354

Query: 394 LDFLL-VSLKNLEVLSLSSNWLSLL-----TKVTSNTTSQKFTVVGLRSCNLIEF--PNF 445
           L  ++  SL  LE       +  L        + +        ++ L   ++I+      
Sbjct: 355 LTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTI-------LLSLIWFDVIKSDVMVV 407

Query: 446 LKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFL 505
           +   H   L++         IPS  L+   +  +   L H  +                 
Sbjct: 408 VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL-HRSIVDHYNIPKTFDSDDLIP 466

Query: 506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIG---------EIPSWLCKLDSLEILVLS 556
             LD                   Y     S IG         E      ++    ++ L 
Sbjct: 467 PYLD------------------QYFY---SHIGHHLKNIEHPE------RMTLFRMVFLD 499

Query: 557 HN------NLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLF 609
                             GS  + L    L+    +     N    E  +    +   L 
Sbjct: 500 FRFLEQKIRHDSTAWNASGSILNTL--QQLKFYKPYI--CDNDPKYERLVN--AILDFLP 553

Query: 610 QGRIPRSLINCSKLEFLDI 628
             +I  +LI     ++ D+
Sbjct: 554 --KIEENLICS---KYTDL 567

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 47.2 bits (111), Expect = 2e-05
 Identities = 74/443 (16%), Positives = 147/443 (33%), Gaps = 110/443 (24%)

Query: 1   MGSSQCLFSIFMQL--FVPLIFFNFTTATFSTASSVLRLCHD--DECSALL---QFKESL 53
           + +     ++   L   +  I  N+T+ +  +++  LR+ H    E   LL    ++  L
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRI-HSIQAELRRLLKSKPYENCL 247

Query: 54  IINDTIEESYHYYPWSSGCRPKAASWKPEEGNI-----DCCSWDGVECSENTGHVMKLDL 108
           ++   ++ +  +  ++  C+            I          D +  +  T H+  LD 
Sbjct: 248 LVLLNVQNAKAWNAFNLSCK------------ILLTTRFKQVTDFLS-AATTTHI-SLDH 293

Query: 109 SNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEI--INLSRLSYL------NLS 160
            +  L        SL     L++L+      +  ++P E+   N  RLS +       L+
Sbjct: 294 HSMTLTPD--EVKSLL----LKYLDC-----RPQDLPREVLTTNPRRLSIIAESIRDGLA 342

Query: 161 HSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQK--------PNFANLVEKLSNLETL- 211
               +  +  + L  +   SL+  L      E +K        P  A++   L  L  + 
Sbjct: 343 TWDNWKHVNCDKLTTIIESSLN-VLEPA---EYRKMFDRLSVFPPSAHIPTIL--LSLIW 396

Query: 212 -DLGYVSIRSTIPHNLANLSSL------TFLSLHSCGLQGRIQSSLGNLSKLLH------ 258
            D+    +   + + L   S +      + +S+    +   ++  L N    LH      
Sbjct: 397 FDVIKSDVMV-VVNKLHKYSLVEKQPKESTISIP--SIYLELKVKLENEYA-LHRSIVDH 452

Query: 259 ---------LDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL 309
                     DL    L       IG  H LK ++        E  T  + +     LD 
Sbjct: 453 YNIPKTFDSDDLIPPYLDQYFYSHIG--HHLKNIEH------PERMTLFRMVF----LDF 500

Query: 310 SF--NKL-SGEFPWSIVIGNFTQLQSLDF-------TSNKFSGELHASIGNLRSLEVLAI 359
            F   K+      W+        LQ L F          K+   ++A +  L  +E   I
Sbjct: 501 RFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLI 560

Query: 360 GRCNFSGRIPSSLRNLTQLITLD 382
               ++  +  +L    + I  +
Sbjct: 561 -CSKYTDLLRIALMAEDEAIFEE 582

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 49.7 bits (119), Expect = 3e-07
 Identities = 31/119 (26%), Positives = 47/119 (39%), Gaps = 10/119 (8%)

Query: 224 HNLANLSSLTFLSLHSCGLQ-GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS--- 279
                 S +  L L +     G+++       +L  L      L      SI NL     
Sbjct: 11  LRNRTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-----TSIANLPKLNK 65

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           LKKL+LS N +SG L    +   +L  L+LS NK+  +      +     L+SLD  + 
Sbjct: 66  LKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIK-DLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 45.1 bits (107), Expect = 1e-05
 Identities = 29/128 (22%), Positives = 53/128 (41%), Gaps = 11/128 (8%)

Query: 529 YLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFSDKLSILDLRANNFF 586
            L ++ S  G++     + + LE L   +  L+ +  LP+      +KL  L+L  N   
Sbjct: 23  VLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPKL-----NKLKKLELSDNRVS 77

Query: 587 GTIPNTFMKESRLGMIDLSHNLFQG-RIPRSLINCSKLEFLDIGDNQIRDIF---PSWLG 642
           G +     K   L  ++LS N  +       L     L+ LD+ + ++ ++     +   
Sbjct: 78  GGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFK 137

Query: 643 TLPNLTVL 650
            LP LT L
Sbjct: 138 LLPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 1e-04
 Identities = 20/98 (20%), Positives = 41/98 (41%), Gaps = 5/98 (5%)

Query: 734 NNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGN 793
           +N+G++       + L  +   +     +   ++  L  L+ L L +N + G +      
Sbjct: 29  SNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEK 86

Query: 794 LTNLESLDLSNNNF--LGQIPQQLVELTFLEFFNVSDN 829
             NL  L+LS N    L  I + L +L  L+  ++ + 
Sbjct: 87  CPNLTHLNLSGNKIKDLSTI-EPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.4 bits (95), Expect = 6e-04
 Identities = 24/105 (22%), Positives = 40/105 (38%), Gaps = 4/105 (3%)

Query: 577 ILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDI 636
           +LD   +N  G +     +   L  +   +      I  +L   +KL+ L++ DN++   
Sbjct: 23  VLDNSRSNE-GKLEGLTDEFEELEFLSTINVGLT-SIA-NLPKLNKLKKLELSDNRVSGG 79

Query: 637 FPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN 681
                   PNLT L L  NK    +           L+ +DL N 
Sbjct: 80  LEVLAEKCPNLTHLNLSGNKIKD-LSTIEPLKKLENLKSLDLFNC 123

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 49.7 bits (119), Expect = 9e-07
 Identities = 29/155 (18%), Positives = 53/155 (34%), Gaps = 29/155 (18%)

Query: 259 LDLSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
           L L+ NE        I   L  L+K++ S N ++     + +    + E+ L+ N+L   
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-N 95

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ 377
                +      L++L   SN+           +  +                S   L+ 
Sbjct: 96  VQHK-MFKGLESLKTLMLRSNR-----------ITCVG-------------NDSFIGLSS 130

Query: 378 LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
           +  L L  N         F   +L +L  L+L +N
Sbjct: 131 VRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 25/134 (18%), Positives = 47/134 (35%), Gaps = 4/134 (2%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGMIDLSHN 607
               L L++N  + L    +     +L  ++   NN    I    F   S +  I L+ N
Sbjct: 33  YTAELRLNNNEFTVLEATGIFKKLPQLRKINFS-NNKITDIEEGAFEGASGVNEILLTSN 91

Query: 608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRID 667
             +    +       L+ L +  N+I  +       L ++ +L L  N+   +   P   
Sbjct: 92  RLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV--APGAF 149

Query: 668 CGFSKLRIIDLSNN 681
                L  ++L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 8/134 (5%)

Query: 132 LNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLSLNSGYG 190
           L L  N+F   E       L +L  +N S++     I     E    +  + L+ N    
Sbjct: 37  LRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLEN 95

Query: 191 LELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL 250
           ++        + + L +L+TL L    I      +   LSS+  LSL+   +      + 
Sbjct: 96  VQ------HKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF 149

Query: 251 GNLSKLLHLDLSLN 264
             L  L  L+L  N
Sbjct: 150 DTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 44.3 bits (105), Expect = 6e-05
 Identities = 34/147 (23%), Positives = 49/147 (33%), Gaps = 11/147 (7%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
             IP     L RL+    +     G        L  L  ++ S N    +E         
Sbjct: 28  EHIPQYTAEL-RLNNNEFTVLEATGIFKK----LPQLRKINFSNNKITDIE------EGA 76

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
            E  S +  + L    + +        L SL  L L S  +      S   LS +  L L
Sbjct: 77  FEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSL 136

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSIN 288
             N++    P +   LHSL  L+L  N
Sbjct: 137 YDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 20/99 (20%), Positives = 41/99 (41%), Gaps = 7/99 (7%)

Query: 749 LTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           L  I  S+N+   +   +     G+  + L +N L+         L +L++L L +N  +
Sbjct: 59  LRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNR-I 117

Query: 809 GQIPQQL-VELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
             +     + L+ +   ++ DN +T  +  G     FD 
Sbjct: 118 TCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG----AFDT 151

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 22/118 (18%), Positives = 36/118 (30%), Gaps = 9/118 (7%)

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSNNNFL 808
           +S +  +          +   + L  L ++N     H+    L  L  L +L +  +  L
Sbjct: 10  SSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG-L 68

Query: 809 GQIPQQ-LVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECE 865
             +          L   N+S N L   +       T    S      L G PL   C 
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALES-LSWK----TVQGLSL-QELVLSGNPLHCSCA 120

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 50.5 bits (120), Expect = 1e-06
 Identities = 24/94 (25%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELP-VSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEE 306
             L     L  L +   + L  L    +  L  L+ L +  + L    P +      L  
Sbjct: 25  HHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSR 84

Query: 307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
           L+LSFN L     W  V G    LQ L  + N  
Sbjct: 85  LNLSFNALE-SLSWKTVQG--LSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 15/101 (14%), Positives = 31/101 (30%), Gaps = 10/101 (9%)

Query: 263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPT-SIQNLVSLEELDLSFNKLSGEFPWS 321
             +   +    +    +L +L +        L    ++ L  L  L +  + L       
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-----F 70

Query: 322 IVIGNF---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAI 359
           +    F    +L  L+ + N     L        SL+ L +
Sbjct: 71  VAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVL 110

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.5 bits (107), Expect = 5e-05
 Identities = 21/130 (16%), Positives = 41/130 (31%), Gaps = 28/130 (21%)

Query: 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHA 346
             + + +    +    +L EL +   +          +    +L++L    +        
Sbjct: 16  TRDGALDSLHHLPGAENLTELYIENQQHLQHLELR-DLRGLGELRNLTIVKSG------- 67

Query: 347 SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEV 406
               LR +              P +     +L  L+LS N+      L +  V   +L+ 
Sbjct: 68  ----LRFVA-------------PDAFHFTPRLSRLNLSFNAL---ESLSWKTVQGLSLQE 107

Query: 407 LSLSSNWLSL 416
           L LS N L  
Sbjct: 108 LVLSGNPLHC 117

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 43.6 bits (102), Expect = 2e-04
 Identities = 12/85 (14%), Positives = 27/85 (31%), Gaps = 2/85 (2%)

Query: 574 KLSILDLRANNFFGTIPN-TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ 632
            L+ L +        +          L  + +  +  +   P +     +L  L++  N 
Sbjct: 32  NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNA 91

Query: 633 IRDIFPSWLGTLPNLTVLILQSNKF 657
           +  +    +  L  L  L+L  N  
Sbjct: 92  LESLSWKTVQGLS-LQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 42.4 bits (99), Expect = 4e-04
 Identities = 16/98 (16%), Positives = 30/98 (30%), Gaps = 4/98 (4%)

Query: 588 TIPNTFMKESRLGMIDLSHNLFQGRIPR-SLINCSKLEFLDIGDNQIRDIFPSWLGTLPN 646
              +       L  + + +      +    L    +L  L I  + +R + P      P 
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81

Query: 647 LTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
           L+ L L  N    +  +         L+ + LS N   
Sbjct: 82  LSRLNLSFNALESLSWKTVQG---LSLQELVLSGNPLH 116

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 44/134 (32%), Positives = 61/134 (45%), Gaps = 18/134 (13%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSL-----GNLSKLLHLD 260
           +N + L L    I    P    +L +L  L L S  L      +L      +L++L  LD
Sbjct: 40  TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----ALPVGVFDSLTQLTVLD 94

Query: 261 LSLNELLGELPVSI-GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFP 319
           L  N+L   LP ++   L  LK+L +  N L+ ELP  I+ L  L  L L  N+L     
Sbjct: 95  LGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK---- 148

Query: 320 WSIVIGNFTQLQSL 333
            SI  G F +L SL
Sbjct: 149 -SIPHGAFDRLSSL 161

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 42/143 (29%), Positives = 61/143 (42%), Gaps = 17/143 (11%)

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI-G 275
           S+ + IP      ++   L LH   +         +L  L  L L  N+L G LPV +  
Sbjct: 33  SVPAGIP------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFD 85

Query: 276 NLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIG--NFTQLQS 332
           +L  L  LDL  N L+  LP+++   LV L+EL +  NKL+      +  G    T L  
Sbjct: 86  SLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-----ELPRGIERLTHLTH 139

Query: 333 LDFTSNKFSGELHASIGNLRSLE 355
           L    N+     H +   L SL 
Sbjct: 140 LALDQNQLKSIPHGAFDRLSSLT 162

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 38/135 (28%), Positives = 58/135 (42%), Gaps = 11/135 (8%)

Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDFTS 337
           + L L  N ++   P    +L++L+EL L  N+L      ++ +G F   TQL  LD  +
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-----ALPVGVFDSLTQLTVLDLGT 97

Query: 338 NKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFL 397
           N+ +    A    L  L+ L +  CN    +P  +  LT L  L L QN  +      F 
Sbjct: 98  NQLTVLPSAVFDRLVHLKELFMC-CNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAF- 155

Query: 398 LVSLKNLEVLSLSSN 412
              L +L    L  N
Sbjct: 156 -DRLSSLTHAYLFGN 169

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 32/139 (23%), Positives = 58/139 (41%), Gaps = 14/139 (10%)

Query: 279 SLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQSLDF 335
           ++ ++ L  N +    P +      L  +DLS N++S      +    F     L SL  
Sbjct: 33  TITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-----ELAPDAFQGLRSLNSLVL 87

Query: 336 TSNKFSGELHASI-GNLRSLEVLAIGRCNFSGRIPS-SLRNLTQLITLDLSQNSYRGTME 393
             NK + EL  S+   L SL++L +   N    +   + ++L  L  L L  N  +   +
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNA-NKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 394 LDFLLVSLKNLEVLSLSSN 412
             F    L+ ++ + L+ N
Sbjct: 146 GTF--SPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 40/162 (24%), Positives = 61/162 (37%), Gaps = 41/162 (25%)

Query: 455 LDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK----RFLLTLDL 510
           + L  N I   IP     P  + L  ++LS+N       Q+  L        R L +L L
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKK-LRRIDLSNN-------QISELAPDAFQGLRSLNSLVL 87

Query: 511 SSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS 570
             N +   LP                     S    L SL++L+L+ N ++ L      +
Sbjct: 88  YGNKITE-LP--------------------KSLFEGLFSLQLLLLNANKINCLRV---DA 123

Query: 571 FSD--KLSILDLRANNFFGTIPN-TFMKESRLGMIDLSHNLF 609
           F D   L++L L  +N   TI   TF     +  + L+ N F
Sbjct: 124 FQDLHNLNLLSLY-DNKLQTIAKGTFSPLRAIQTMHLAQNPF 164

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 30/136 (22%), Positives = 50/136 (36%), Gaps = 9/136 (6%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSD--KLSILDLRANNFFGTIP-NTFMKESRLGMIDLS 605
           ++  + L  N +  + P   G+FS   KL  +DL  NN    +  + F     L  + L 
Sbjct: 33  TITEIRLEQNTIKVIPP---GAFSPYKKLRRIDLS-NNQISELAPDAFQGLRSLNSLVLY 88

Query: 606 HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR 665
            N               L+ L +  N+I  +       L NL +L L  NK   I +   
Sbjct: 89  GNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG-- 146

Query: 666 IDCGFSKLRIIDLSNN 681
                  ++ + L+ N
Sbjct: 147 TFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 25/103 (24%), Positives = 46/103 (44%), Gaps = 7/103 (6%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +P+ +T I L  N    + P + +  K L+ ++L NN +    P     L +L SL L  
Sbjct: 30  LPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYG 89

Query: 805 NNFLGQIPQQLVE-LTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
           N  + ++P+ L E L  L+   ++ N +   +        F +
Sbjct: 90  NK-ITELPKSLFEGLFSLQLLLLNANKINC-LRVD----AFQD 126

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 42.3 bits (100), Expect = 3e-04
 Identities = 31/148 (20%), Positives = 52/148 (35%), Gaps = 14/148 (9%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEIL-ELVNLVSLDLSLNSGYGLELQKPNFAN 200
           + +P  I  + RL    +        IP         L  +DLS N    L        +
Sbjct: 28  TNLPETITEI-RLEQNTIK------VIPPGAFSPYKKLRRIDLSNNQISELA------PD 74

Query: 201 LVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLD 260
             + L +L +L L    I          L SL  L L++  +      +  +L  L  L 
Sbjct: 75  AFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLS 134

Query: 261 LSLNELLGELPVSIGNLHSLKKLDLSIN 288
           L  N+L      +   L +++ + L+ N
Sbjct: 135 LYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 8e-04
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 3/91 (3%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           I L  N  +   P +     KL  +D+ +NQI ++ P     L +L  L+L  NK   + 
Sbjct: 37  IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITEL- 95

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSF 692
               +  G   L+++ L+ N+    L   +F
Sbjct: 96  -PKSLFEGLFSLQLLLLNANKIN-CLRVDAF 124

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 46.5 bits (111), Expect = 2e-05
 Identities = 50/209 (23%), Positives = 85/209 (40%), Gaps = 20/209 (9%)

Query: 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
              +L   S+   +  N   L+S+  +  ++  ++      +  L  + +L L  N+L  
Sbjct: 22  IKANLKKKSVTDAVTQN--ELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKL-H 76

Query: 269 ELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNF 327
           ++   +  L +L  L L+ N L   LP  +   L +L+EL L  N+L      S+  G F
Sbjct: 77  DISA-LKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQ-----SLPDGVF 129

Query: 328 ---TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSL-RNLTQLITLDL 383
              T L  L+   N+           L +L  L +   N    +P  +   LTQL  L L
Sbjct: 130 DKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLS-YNQLQSLPEGVFDKLTQLKDLRL 188

Query: 384 SQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
            QN  +   +  F    L +L+ + L  N
Sbjct: 189 YQNQLKSVPDGVF--DRLTSLQYIWLHDN 215

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 18/114 (15%), Positives = 43/114 (37%), Gaps = 9/114 (7%)

Query: 207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC------GLQGRIQSSLGNLSKLLHLD 260
            ++ +D     I S    ++  L  +  + L  C       L+ R+         +L ++
Sbjct: 62  KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLE-RLSQLENLQKSMLEME 120

Query: 261 LSLNELLGELPV-SIGNLHSLKKLDLS-INNLSGELPTSIQNLVSLEELDLSFN 312
           +     + +  + ++ +  +LK L LS +  +  +         SL  L+L  +
Sbjct: 121 IISCGNVTDKGIIALHHFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLELKLD 174

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 43/127 (33%), Positives = 59/127 (46%), Gaps = 9/127 (7%)

Query: 209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG 268
             LDL   S++S        L+SLT L L    LQ         L+ L +L+LS N+ L 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQ-LQ 89

Query: 269 ELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGN 326
            LP  +   L  LK+L L+ N L   LP  +   L  L++L L  N+L      S+  G 
Sbjct: 90  SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-----SVPDGV 143

Query: 327 FTQLQSL 333
           F +L SL
Sbjct: 144 FDRLTSL 150

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 44/144 (30%), Positives = 62/144 (43%), Gaps = 18/144 (12%)

Query: 217 SIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGN 276
           S+ + IP      +  T+L L +  L+         L+ L  L L  N+ L  LP  + N
Sbjct: 21  SVPTGIP------AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNK-LQSLPNGVFN 73

Query: 277 -LHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNF---TQLQ 331
            L SL  L+LS N L   LP  +   L  L+EL L+ N+L      S+  G F   TQL+
Sbjct: 74  KLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-----SLPDGVFDKLTQLK 127

Query: 332 SLDFTSNKFSGELHASIGNLRSLE 355
            L    N+           L SL+
Sbjct: 128 DLRLYQNQLKSVPDGVFDRLTSLQ 151

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 31/117 (26%), Positives = 50/117 (42%), Gaps = 11/117 (9%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            ++  L L      + +P  L+N   LT + L +  +      S  N+++LL L LS N 
Sbjct: 31  RDVTELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89

Query: 266 LLGELPVSI-GNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPW 320
           L   +P      L SL+ L L  N++S  +P     +L +L  L +  N      P 
Sbjct: 90  L-RCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN------PL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 6e-04
 Identities = 28/101 (27%), Positives = 48/101 (47%), Gaps = 14/101 (13%)

Query: 750 TSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG 809
           T + L  N+F  ++P  ++N K L +++L NN +         N+T L +L LS N  L 
Sbjct: 34  TELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR-LR 91

Query: 810 QIPQ----QLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN 846
            IP      L  L  L   ++  N ++  +P+G     F++
Sbjct: 92  CIPPRTFDGLKSLRLL---SLHGNDISV-VPEG----AFND 124

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.7 bits (96), Expect = 8e-04
 Identities = 36/126 (28%), Positives = 53/126 (42%), Gaps = 19/126 (15%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQK-PN--F 198
             IP ++  L    YL+ +    F  +P E+    +L  +DLS N      +    N  F
Sbjct: 27  KGIPRDVTEL----YLDGNQ---FTLVPKELSNYKHLTLIDLSNN-----RISTLSNQSF 74

Query: 199 ANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLH 258
           +N+      L TL L Y  +R   P     L SL  LSLH   +    + +  +LS L H
Sbjct: 75  SNMT----QLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSH 130

Query: 259 LDLSLN 264
           L +  N
Sbjct: 131 LAIGAN 136

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	887
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.97
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.97
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.96
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.96
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.95
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.93
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.92
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.92
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.91
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.91
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.88
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.87
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.87
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.86
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.86
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.85
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.85
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.84
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.84
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.84
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.84
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.84
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.83
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.83
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.8
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.78
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.73
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.72
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.71
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.71
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.71
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.7
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.7
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.68
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.67
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.66
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.65
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.65
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.64
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.61
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.55
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.52
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.51
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.51
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.51
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.51
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.45
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.44
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.39
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.39
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.35
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.33
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.32
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.31
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.29
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.11
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.09
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.03
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.02
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	98.97
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.72
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.66
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.6
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.54
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.48
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.39
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.26
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.24
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.79
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.65
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.17
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	96.68
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.61
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.27

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=5.6e-89  Score=824.95  Aligned_cols=718  Identities=31%  Similarity=0.415  Sum_probs=562.0

Q ss_pred             CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccc-
Q 040113           38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGS-  116 (887)
Q Consensus        38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~-  116 (887)
                      +.++|++||++||+++.++.                 .+++|+.   +.+||+|+||+|+  .++|++|+|+++.+.|. 
T Consensus         9 ~~~~~~~all~~k~~~~~~~-----------------~l~~W~~---~~~~C~w~gv~C~--~~~v~~L~L~~~~l~g~~   66 (768)
T 3rgz_A            9 SLYREIHQLISFKDVLPDKN-----------------LLPDWSS---NKNPCTFDGVTCR--DDKVTSIDLSSKPLNVGF   66 (768)
T ss_dssp             CHHHHHHHHHHHHTTCSCTT-----------------SSTTCCT---TSCGGGSTTEEEE--TTEEEEEECTTSCCCEEH
T ss_pred             CCHHHHHHHHHHHhhCCCcc-----------------cccCCCC---CCCCcCCcceEEC--CCcEEEEECCCCCcCCcc
Confidence            35789999999999997432                 5889985   6799999999998  58999999999999987 


Q ss_pred             --ccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCc--cccCCCCCcEEEccCCCCCCcc
Q 040113          117 --INSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPS--EILELVNLVSLDLSLNSGYGLE  192 (887)
Q Consensus       117 --~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~--~l~~l~~L~~L~l~~n~~~~l~  192 (887)
                        +++  .+.++++|++++++.+.+..  +|+.|+++++|++|+|++|.+.|.+|.  .++++++|++|++++|.+.   
T Consensus        67 ~~l~~--~l~~L~~L~~l~~~~~~~~~--l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~---  139 (768)
T 3rgz_A           67 SAVSS--SLLSLTGLESLFLSNSHING--SVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLD---  139 (768)
T ss_dssp             HHHHH--HTTTCTTCCEEECTTSCEEE--CCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEE---
T ss_pred             CccCh--hHhccCcccccCCcCCCcCC--CchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccC---
Confidence              765  89999999999999998753  678899999999999999999999998  9999999999999999732   


Q ss_pred             ccCCChHHH-hhcCCCCCEEEccCCCCCCCchhh---hcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC
Q 040113          193 LQKPNFANL-VEKLSNLETLDLGYVSIRSTIPHN---LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG  268 (887)
Q Consensus       193 ~~~~~~~~~-~~~l~~L~~L~L~~n~~~~~~~~~---l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~  268 (887)
                         +.+|.. +.++++|++|++++|.+++..+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+
T Consensus       140 ---~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~  214 (768)
T 3rgz_A          140 ---FPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFST  214 (768)
T ss_dssp             ---CCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCS
T ss_pred             ---CcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCC
Confidence               223333 378999999999999999988877   88999999999999999876653  889999999999999998


Q ss_pred             cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc
Q 040113          269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI  348 (887)
Q Consensus       269 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  348 (887)
                      .+|. ++++++|++|++++|.+++.+|..++.+++|++|++++|++++.+|..    .+++|++|++++|.+++.+|..+
T Consensus       215 ~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~----~l~~L~~L~L~~n~l~~~ip~~~  289 (768)
T 3rgz_A          215 GIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL----PLKSLQYLSLAENKFTGEIPDFL  289 (768)
T ss_dssp             CCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC----CCTTCCEEECCSSEEEESCCCCS
T ss_pred             CCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc----ccCCCCEEECcCCccCCccCHHH
Confidence            8887 999999999999999999999999999999999999999999888743    78999999999999999999988


Q ss_pred             CCC-CCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCC
Q 040113          349 GNL-RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQ  427 (887)
Q Consensus       349 ~~l-~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~  427 (887)
                      ... ++|++|++++|.+++.+|..++.+++|++|++++|.+.+..+.. .+..+++|++|++++|.+..           
T Consensus       290 ~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~-~l~~l~~L~~L~Ls~n~l~~-----------  357 (768)
T 3rgz_A          290 SGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMD-TLLKMRGLKVLDLSFNEFSG-----------  357 (768)
T ss_dssp             CTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHH-HHTTCTTCCEEECCSSEEEE-----------
T ss_pred             HhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHH-HHhcCCCCCEEeCcCCccCc-----------
Confidence            775 99999999999999999999999999999999999998777754 37788889999888885431           


Q ss_pred             CeeEEeeCCCCCcccChhhhcCC-cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCcccccc
Q 040113          428 KFTVVGLRSCNLIEFPNFLKNQH-HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL  506 (887)
Q Consensus       428 ~L~~l~l~~~~l~~~~~~l~~~~-~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  506 (887)
                                   .+|..+..++ +|+.|++++|.+++.+|..+....+++|++|++++|.+++..+..+.   .     
T Consensus       358 -------------~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~---~-----  416 (768)
T 3rgz_A          358 -------------ELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLS---N-----  416 (768)
T ss_dssp             -------------CCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGG---G-----
T ss_pred             -------------cccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHh---c-----
Confidence                         3455666665 78888888888887777766554456677777777776654433221   1     


Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF  586 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~  586 (887)
                                      .++++++++++|++.+.+|..++.+++|++|++++|.+++.+|..+..++ +|++|++++|+++
T Consensus       417 ----------------l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~  479 (768)
T 3rgz_A          417 ----------------CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVK-TLETLILDFNDLT  479 (768)
T ss_dssp             ----------------CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCT-TCCEEECCSSCCC
T ss_pred             ----------------CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCC-CceEEEecCCccc
Confidence                            23444555555555556666667777777777777777777777776666 5777777777777


Q ss_pred             ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcc
Q 040113          587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI  666 (887)
Q Consensus       587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  666 (887)
                      +.+|..+..+++|++|++++|++++.+|..+..+++|++|+|++|++++.+|..++.+++|++|++++|+++|.+|... 
T Consensus       480 ~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~-  558 (768)
T 3rgz_A          480 GEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAM-  558 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGG-
T ss_pred             CcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHH-
Confidence            7777777777777777777777777777777777777777777777777777777777777777777777776666544 


Q ss_pred             ccCCCCCCEEEcC---------CCcC-------------cccCChhhhhccccchhcccCCccccccccCCccccccccc
Q 040113          667 DCGFSKLRIIDLS---------NNRF-------------TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV  724 (887)
Q Consensus       667 ~~~l~~L~~L~Ls---------~N~l-------------~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~  724 (887)
                       .....+..+++.         ++..             .+..|.. +..+..+...+...                   
T Consensus       559 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~l~~-------------------  617 (768)
T 3rgz_A          559 -FKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQ-LNRLSTRNPCNITS-------------------  617 (768)
T ss_dssp             -GTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGG-GGGGGGTCCSCTTS-------------------
T ss_pred             -hcccchhhhhccccccccccccccccccccccccccccccccchh-hhcccccccccccc-------------------
Confidence             222222222222         1111             1111111 11111100000000                   


Q ss_pred             cccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCC
Q 040113          725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN  804 (887)
Q Consensus       725 ~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~  804 (887)
                              ....|.........+.|+.|||++|+++|.+|.+++++++|+.|+|++|+++|.+|..|+++++|++|||++
T Consensus       618 --------~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~  689 (768)
T 3rgz_A          618 --------RVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSS  689 (768)
T ss_dssp             --------CEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             --------ceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCC
Confidence                    000111111122357799999999999999999999999999999999999999999999999999999999


Q ss_pred             CcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccccccCCCcCCCCCCCCCCCCCCCCCCCCCC
Q 040113          805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRECESDEAPTNEDH  875 (887)
Q Consensus       805 N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c~~~~~~~~~~~  875 (887)
                      |+++|.+|..++++++|++||+++|+|+|.||+++||.+|+..+|.||++|||.|+. .|....+...+..
T Consensus       690 N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~-~C~~~~~~~~~~~  759 (768)
T 3rgz_A          690 NKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP-RCDPSNADGYAHH  759 (768)
T ss_dssp             SCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSC-CCCSCC-------
T ss_pred             CcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCCc-CCCCCccCCCCCC
Confidence            999999999999999999999999999999999999999999999999999999987 8987666655443

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=6.7e-69  Score=649.47  Aligned_cols=631  Identities=30%  Similarity=0.392  Sum_probs=526.2

Q ss_pred             cEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCc--cccCCCCCCEEECCCCCCCccCCccc-cCCCCC
Q 040113          102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS--EIINLSRLSYLNLSHSSFFGQIPSEI-LELVNL  178 (887)
Q Consensus       102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~--~~~~l~~L~~L~Ls~n~~~~~~p~~l-~~l~~L  178 (887)
                      +++.++++.+.+   .+....++++++|++|+|++|.+.+. +|.  .++++++|++|+|++|.+.+.+|..+ .++++|
T Consensus        78 ~L~~l~~~~~~~---~~l~~~~~~l~~L~~L~Ls~n~l~~~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L  153 (768)
T 3rgz_A           78 GLESLFLSNSHI---NGSVSGFKCSASLTSLDLSRNSLSGP-VTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSL  153 (768)
T ss_dssp             TCCEEECTTSCE---EECCCCCCCCTTCCEEECCSSEEEEE-GGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTC
T ss_pred             cccccCCcCCCc---CCCchhhccCCCCCEEECCCCcCCCc-CCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCC
Confidence            455666666554   33223899999999999999999875 777  89999999999999999999888776 789999


Q ss_pred             cEEEccCCCCCCccccCCChHHH---hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCC
Q 040113          179 VSLDLSLNSGYGLELQKPNFANL---VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSK  255 (887)
Q Consensus       179 ~~L~l~~n~~~~l~~~~~~~~~~---~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  255 (887)
                      ++|++++|.+...      .+..   +.++++|++|++++|.+.+..+.  ..+++|++|++++|.+.+.+|. ++++++
T Consensus       154 ~~L~Ls~n~l~~~------~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~  224 (768)
T 3rgz_A          154 EVLDLSANSISGA------NVVGWVLSDGCGELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSA  224 (768)
T ss_dssp             SEEECCSSCCEEE------THHHHHHTTCCTTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCS
T ss_pred             CEEECCCCccCCc------CChhhhhhccCCCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCC
Confidence            9999999985332      3444   78999999999999999887764  8899999999999999988887 999999


Q ss_pred             CcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccC-CCCccEEE
Q 040113          256 LLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGN-FTQLQSLD  334 (887)
Q Consensus       256 L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~-l~~L~~L~  334 (887)
                      |++|++++|.+++.+|..++++++|++|++++|.+.+.+|..  .+++|++|++++|++++.+|..  +.. +++|++|+
T Consensus       225 L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~--~~~~~~~L~~L~  300 (768)
T 3rgz_A          225 LQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDF--LSGACDTLTGLD  300 (768)
T ss_dssp             CCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCC--SCTTCTTCSEEE
T ss_pred             CCEEECcCCcCCCcccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHH--HHhhcCcCCEEE
Confidence            999999999999999999999999999999999999887765  8999999999999999999876  655 49999999


Q ss_pred             ccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCEEEcCCCCCccccchhhhhcCCC-CCCEEEccCC
Q 040113          335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLITLDLSQNSYRGTMELDFLLVSLK-NLEVLSLSSN  412 (887)
Q Consensus       335 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~-~L~~L~L~~n  412 (887)
                      +++|.+++.+|..++.+++|++|++++|.+.+.+|.. +..+++|++|++++|.+.+..+..  +..++ +|++|++++|
T Consensus       301 Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~--l~~l~~~L~~L~Ls~N  378 (768)
T 3rgz_A          301 LSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPES--LTNLSASLLTLDLSSN  378 (768)
T ss_dssp             CCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTT--HHHHTTTCSEEECCSS
T ss_pred             CcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHH--HHhhhcCCcEEEccCC
Confidence            9999999999999999999999999999999888876 899999999999999998877766  66666 9999999999


Q ss_pred             cccccccccC-CCCCCCeeEEeeCCCCCc-ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccC
Q 040113          413 WLSLLTKVTS-NTTSQKFTVVGLRSCNLI-EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTG  490 (887)
Q Consensus       413 ~i~~~~~~~~-~~~~~~L~~l~l~~~~l~-~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~  490 (887)
                      .+........ ....++|+.+++++|.+. .+|..+..+++|+.|++++|++++.+|..+..  +++|+.|++++|.+++
T Consensus       379 ~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~--l~~L~~L~L~~n~l~~  456 (768)
T 3rgz_A          379 NFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGS--LSKLRDLKLWLNMLEG  456 (768)
T ss_dssp             EEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGG--CTTCCEEECCSSCCCS
T ss_pred             CcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhc--CCCCCEEECCCCcccC
Confidence            6643221111 112567777777777777 67777777777777888777777777777765  6777777777776665


Q ss_pred             ccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccc
Q 040113          491 FDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGS  570 (887)
Q Consensus       491 ~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~  570 (887)
                      ..+..+.                        ..++++++++++|++.+.+|..+..+++|++|++++|++++.+|..++.
T Consensus       457 ~~p~~~~------------------------~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~  512 (768)
T 3rgz_A          457 EIPQELM------------------------YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGR  512 (768)
T ss_dssp             CCCGGGG------------------------GCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGG
T ss_pred             cCCHHHc------------------------CCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhc
Confidence            4433221                        1245666666677777778888888999999999999999999999988


Q ss_pred             cCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCC-------------------
Q 040113          571 FSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN-------------------  631 (887)
Q Consensus       571 l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N-------------------  631 (887)
                      ++ +|++|++++|++++.+|..+..+++|++|++++|+++|.+|..+..+..+..+++..+                   
T Consensus       513 l~-~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  591 (768)
T 3rgz_A          513 LE-NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAG  591 (768)
T ss_dssp             CT-TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSE
T ss_pred             CC-CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccc
Confidence            88 7999999999999999999999999999999999999999988877766665554431                   


Q ss_pred             ---cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113          632 ---QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY  708 (887)
Q Consensus       632 ---~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~  708 (887)
                         .+.+..+..+..++.++.+++..|.+.|.+|..+  ..+++|+.||+++|+++|.+|.. ++.              
T Consensus       592 ~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~--~~l~~L~~LdLs~N~l~g~ip~~-l~~--------------  654 (768)
T 3rgz_A          592 NLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF--DNNGSMMFLDMSYNMLSGYIPKE-IGS--------------  654 (768)
T ss_dssp             EEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSC--SSSBCCCEEECCSSCCBSCCCGG-GGG--------------
T ss_pred             cccccccccchhhhccccccccccccceecccCchhh--hccccccEEECcCCcccccCCHH-Hhc--------------
Confidence               2345556666777788888999999999988876  78999999999999999999975 221              


Q ss_pred             cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113          709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP  788 (887)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  788 (887)
                                                           .+.|+.|+|++|+++|.||..++++++|++|||++|+++|.+|
T Consensus       655 -------------------------------------l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip  697 (768)
T 3rgz_A          655 -------------------------------------MPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIP  697 (768)
T ss_dssp             -------------------------------------CTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCC
T ss_pred             -------------------------------------cccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCC
Confidence                                                 4568999999999999999999999999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCc-ccc
Q 040113          789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY-LTG  833 (887)
Q Consensus       789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~-l~g  833 (887)
                      ..++++++|++|||++|+++|.||.. ..+..+....+.+|+ |.|
T Consensus       698 ~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg  742 (768)
T 3rgz_A          698 QAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG  742 (768)
T ss_dssp             GGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred             hHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence            99999999999999999999999975 344556666677775 555

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-57  Score=547.10  Aligned_cols=607  Identities=22%  Similarity=0.195  Sum_probs=476.0

Q ss_pred             EEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccC
Q 040113          106 LDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSL  185 (887)
Q Consensus       106 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~  185 (887)
                      ++.+++.+.. ++.  .+.  +++++|+|++|.+++. .+..|+++++|++|++++|.+.+..|..++++++|++|++++
T Consensus         9 ~~cs~~~L~~-ip~--~~~--~~l~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~   82 (680)
T 1ziw_A            9 ADCSHLKLTQ-VPD--DLP--TNITVLNLTHNQLRRL-PAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQH   82 (680)
T ss_dssp             EECCSSCCSS-CCS--CSC--TTCSEEECCSSCCCCC-CGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCS
T ss_pred             eECCCCCccc-ccc--ccC--CCCcEEECCCCCCCCc-CHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCC
Confidence            4445555542 332  333  6899999999999875 456799999999999999999888888999999999999999


Q ss_pred             CCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC
Q 040113          186 NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE  265 (887)
Q Consensus       186 n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~  265 (887)
                      |.+..+.      +..++++++|++|++++|.+.+..+..++++++|++|++++|.+.+..+..+.++++|++|++++|.
T Consensus        83 n~l~~l~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           83 NELSQLS------DKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             SCCCCCC------TTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             CccCccC------hhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            9865443      3357889999999999999988888889999999999999999998888889999999999999999


Q ss_pred             CCCcchhhcc--CCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhh-ccCCCCccEEEccCCCCCC
Q 040113          266 LLGELPVSIG--NLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIV-IGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       266 l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~L~~n~l~~  342 (887)
                      +++..+..+.  .+++|++|++++|.+++..|..+..+++|+.|++.++.+.+....... .-..++|+.|++++|.+++
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~  236 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLST  236 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCE
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccc
Confidence            9887777654  568999999999999988888999999999999999887643221100 0134789999999999998


Q ss_pred             ccccccCCCCC--ccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccc
Q 040113          343 ELHASIGNLRS--LEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV  420 (887)
Q Consensus       343 ~~~~~l~~l~~--L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  420 (887)
                      ..+..+..++.  |++|++++|.+.+..+..+..+++|++|++++|.+.+..+..  +..+++|+.|++++|....... 
T Consensus       237 ~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~-  313 (680)
T 1ziw_A          237 TSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSIS-  313 (680)
T ss_dssp             ECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC----
T ss_pred             cChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccc-
Confidence            88888887765  999999999999888888999999999999999998877655  7889999999998873221100 


Q ss_pred             cCCCCCCCeeEEeeCCCCCcccC-hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccC
Q 040113          421 TSNTTSQKFTVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLP  499 (887)
Q Consensus       421 ~~~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~  499 (887)
                                     ...+..+. ..+..+++|++|++++|.+.+..+..+..  +++|++|++++|.+......     
T Consensus       314 ---------------~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~Ls~n~~~~~~l~-----  371 (680)
T 1ziw_A          314 ---------------LASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTG--LINLKYLSLSNSFTSLRTLT-----  371 (680)
T ss_dssp             ------------------CCEECTTTTTTCTTCCEEECCSCCBCCCCTTTTTT--CTTCCEEECTTCBSCCCEEC-----
T ss_pred             ---------------cccccccChhhcccCCCCCEEECCCCccCCCChhHhcc--ccCCcEEECCCCchhhhhcc-----
Confidence                           00011111 14677888999999999988877777765  78888888887764321100     


Q ss_pred             CccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh--CcCCCCeEEcCCCccCCCCCCcccccCCcceE
Q 040113          500 GGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSI  577 (887)
Q Consensus       500 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~  577 (887)
                                                               +..+.  ..++|+.|++++|++++..|..+..++ +|++
T Consensus       372 -----------------------------------------~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~  409 (680)
T 1ziw_A          372 -----------------------------------------NETFVSLAHSPLHILNLTKNKISKIESDAFSWLG-HLEV  409 (680)
T ss_dssp             -----------------------------------------TTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCT-TCCE
T ss_pred             -----------------------------------------hhhhcccccCcCceEECCCCCCCeEChhhhhCCC-CCCE
Confidence                                                     00111  125788888888888877788888777 6888


Q ss_pred             EecCCCcccccCC-ccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCC--CCCCccccCCCCCCEEEccC
Q 040113          578 LDLRANNFFGTIP-NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR--DIFPSWLGTLPNLTVLILQS  654 (887)
Q Consensus       578 L~L~~N~l~~~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~--~~~~~~~~~l~~L~~L~L~~  654 (887)
                      |++++|++++.+| ..|..+++|++|++++|++.+..+..|..+++|+.|++++|.+.  +..|..|..+++|++|++++
T Consensus       410 L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~  489 (680)
T 1ziw_A          410 LDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN  489 (680)
T ss_dssp             EECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCS
T ss_pred             EeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCC
Confidence            8888888877665 57888888888888888888888888888888888888888876  56778888888888888888


Q ss_pred             CcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeee
Q 040113          655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMN  734 (887)
Q Consensus       655 N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  734 (887)
                      |++++..+..+  .++++|++|++++|++++..+.. +..-                                       
T Consensus       490 N~l~~i~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~-~~~~---------------------------------------  527 (680)
T 1ziw_A          490 NNIANINDDML--EGLEKLEILDLQHNNLARLWKHA-NPGG---------------------------------------  527 (680)
T ss_dssp             SCCCCCCTTTT--TTCTTCCEEECCSSCCGGGGSTT-STTS---------------------------------------
T ss_pred             CCCCcCChhhh--ccccccCEEeCCCCCccccchhh-ccCC---------------------------------------
Confidence            88887766554  67888899999988887421110 0000                                       


Q ss_pred             eccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc
Q 040113          735 NKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ  814 (887)
Q Consensus       735 ~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~  814 (887)
                          ......-.+.|+.|+|++|+++...+..|+++++|++|+|++|++++..+..|.++++|+.|+|++|++++..|..
T Consensus       528 ----~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~  603 (680)
T 1ziw_A          528 ----PIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKV  603 (680)
T ss_dssp             ----CCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHH
T ss_pred             ----cchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhH
Confidence                0000011567999999999999555567999999999999999999888888999999999999999999999888


Q ss_pred             cc-CCCCCCeeecccCcccccCCC
Q 040113          815 LV-ELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       815 l~-~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      +. .+++|+++++++|++.+.-+.
T Consensus       604 ~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          604 FGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             HHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             hcccccccCEEEccCCCcccCCcc
Confidence            87 789999999999999987653

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=5.5e-57  Score=540.91  Aligned_cols=598  Identities=21%  Similarity=0.202  Sum_probs=459.4

Q ss_pred             CeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCC
Q 040113          130 EWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLE  209 (887)
Q Consensus       130 ~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~  209 (887)
                      +.++.++++++.  +|..+.  +++++|+|++|.+.+..+..+.++++|++|++++|.+..+      .|..++++++|+
T Consensus         7 ~~~~cs~~~L~~--ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~------~~~~~~~l~~L~   76 (680)
T 1ziw_A            7 EVADCSHLKLTQ--VPDDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKL------EPELCQKLPMLK   76 (680)
T ss_dssp             SEEECCSSCCSS--CCSCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCC------CTTHHHHCTTCC
T ss_pred             CeeECCCCCccc--cccccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCcc------CHHHHhcccCcC
Confidence            568888888874  677665  7999999999999887777899999999999999985443      367788899999


Q ss_pred             EEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC
Q 040113          210 TLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN  289 (887)
Q Consensus       210 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~  289 (887)
                      +|++++|.+++..+..|+++++|++|++++|.+.+..+..|+++++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus        77 ~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~  156 (680)
T 1ziw_A           77 VLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNK  156 (680)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSC
T ss_pred             EEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCc
Confidence            99999999887777778999999999999999987777888999999999999999988888888889999999999999


Q ss_pred             CCCccchhhh--CCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccC---CCCCccEEEccCCcC
Q 040113          290 LSGELPTSIQ--NLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIG---NLRSLEVLAIGRCNF  364 (887)
Q Consensus       290 l~~~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~---~l~~L~~L~L~~n~i  364 (887)
                      +++..+..++  .+++|++|++++|.+++..+..  ++.+++|+.|++.++.+.+.....+.   ..++|+.|++++|.+
T Consensus       157 l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l  234 (680)
T 1ziw_A          157 IQALKSEELDIFANSSLKKLELSSNQIKEFSPGC--FHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQL  234 (680)
T ss_dssp             CCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTG--GGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCC
T ss_pred             ccccCHHHhhccccccccEEECCCCcccccChhh--hhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcc
Confidence            8877776654  4578999999999888777765  77888888888888877543222211   347788888888888


Q ss_pred             CccCCccccCCCC--CCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113          365 SGRIPSSLRNLTQ--LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF  442 (887)
Q Consensus       365 ~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~  442 (887)
                      .+..|..+..++.  |++|++++|.+.+..+..  +..+++|++|++++|.+...                        .
T Consensus       235 ~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~------------------------~  288 (680)
T 1ziw_A          235 STTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDS--FAWLPQLEYFFLEYNNIQHL------------------------F  288 (680)
T ss_dssp             CEECTTTTGGGGGSCCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSCCBSEE------------------------C
T ss_pred             cccChhHhhccCcCCCCEEECCCCCcCccCccc--ccCcccccEeeCCCCccCcc------------------------C
Confidence            8877777777654  888888888877665544  56666666666666644322                        1


Q ss_pred             ChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCC
Q 040113          443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVP  522 (887)
Q Consensus       443 ~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~  522 (887)
                      |..+..+++|+.|++++|...+.++..-    ++.             +..                        .....
T Consensus       289 ~~~~~~l~~L~~L~L~~~~~~~~~~~~~----lp~-------------i~~------------------------~~~~~  327 (680)
T 1ziw_A          289 SHSLHGLFNVRYLNLKRSFTKQSISLAS----LPK-------------IDD------------------------FSFQW  327 (680)
T ss_dssp             TTTTTTCTTCCEEECTTCBCCC----------CCE-------------ECT------------------------TTTTT
T ss_pred             hhhhcCCCCccEEeccchhhhccccccc----ccc-------------cCh------------------------hhccc
Confidence            3345556666666666554332211000    000             000                        00001


Q ss_pred             CCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCC--CCCcccccC-CcceEEecCCCcccccCCccccCCCcc
Q 040113          523 PSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRL  599 (887)
Q Consensus       523 ~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~~L  599 (887)
                      .++++++++++|.+.+..+..|..+++|++|++++|.+...  .+..+..+. .+|+.|++++|++++..|..|..+++|
T Consensus       328 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L  407 (680)
T 1ziw_A          328 LKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHL  407 (680)
T ss_dssp             CTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTC
T ss_pred             CCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCC
Confidence            23344444555555555566788899999999999976432  222333321 269999999999999999999999999


Q ss_pred             cEEEccCCeeeeeCC-ccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccc--cCCCCccccCCCCCCEE
Q 040113          600 GMIDLSHNLFQGRIP-RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG--IIREPRIDCGFSKLRII  676 (887)
Q Consensus       600 ~~L~Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~~~~~~~l~~L~~L  676 (887)
                      +.|++++|.+++.+| ..|.++++|++|++++|++.+..+..|..+++|+.|++++|.+.+  .+|..+  ..+++|+.|
T Consensus       408 ~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~--~~l~~L~~L  485 (680)
T 1ziw_A          408 EVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF--QPLRNLTIL  485 (680)
T ss_dssp             CEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT--TTCTTCCEE
T ss_pred             CEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc--ccCCCCCEE
Confidence            999999999998776 689999999999999999999999999999999999999999874  445444  789999999


Q ss_pred             EcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec
Q 040113          677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS  756 (887)
Q Consensus       677 ~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  756 (887)
                      ++++|++++ +|...|..                                                   .+.|+.|+|++
T Consensus       486 ~Ls~N~l~~-i~~~~~~~---------------------------------------------------l~~L~~L~Ls~  513 (680)
T 1ziw_A          486 DLSNNNIAN-INDDMLEG---------------------------------------------------LEKLEILDLQH  513 (680)
T ss_dssp             ECCSSCCCC-CCTTTTTT---------------------------------------------------CTTCCEEECCS
T ss_pred             ECCCCCCCc-CChhhhcc---------------------------------------------------ccccCEEeCCC
Confidence            999999984 44332221                                                   45689999999


Q ss_pred             CcCCccCh--------hhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeccc
Q 040113          757 NRFDGMIP--------TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD  828 (887)
Q Consensus       757 N~l~~~ip--------~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~  828 (887)
                      |++++..+        ..++++++|++|+|++|+++...+..|+++++|+.|||++|++++..+..|..+++|++|++++
T Consensus       514 N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~  593 (680)
T 1ziw_A          514 NNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK  593 (680)
T ss_dssp             SCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred             CCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCC
Confidence            99986532        2378999999999999999965556799999999999999999988888889999999999999


Q ss_pred             CcccccCCCCC--cCccccccccCCCcCCCCCCC
Q 040113          829 NYLTGPIPQGR--QFATFDNSSFESNSGLCGRPL  860 (887)
Q Consensus       829 N~l~g~iP~~~--~~~~~~~~~~~~n~~lcg~~~  860 (887)
                      |++++..|..-  .+..+....+.|||+.|+|+.
T Consensus       594 N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~~  627 (680)
T 1ziw_A          594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCES  627 (680)
T ss_dssp             SCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred             CcCCccChhHhcccccccCEEEccCCCcccCCcc
Confidence            99998766431  345566677889999998763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=5.2e-52  Score=490.98  Aligned_cols=520  Identities=19%  Similarity=0.201  Sum_probs=368.5

Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  286 (887)
                      ++++|++++|.+++..|..|+++++|++|++++|.+.+..|.+|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            34555555555655556666677777777777777666666667777777777777777766666677777777777777


Q ss_pred             CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc--EEEccCCcC
Q 040113          287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE--VLAIGRCNF  364 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~--~L~L~~n~i  364 (887)
                      +|.+++..+..++.+++|++|++++|++.+.....  +..+++|++|++++|.+++..+..++.+++|+  .|++++|.+
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPK--GFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCT--TCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCccc--ccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            77777655666777777777777777776522222  33467777777777777766666677777777  677777777


Q ss_pred             CccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc-C
Q 040113          365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF-P  443 (887)
Q Consensus       365 ~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~-~  443 (887)
                      .+..|..+.. .+|++|++++|...   +.  .+..+..+....+...........                    .+ +
T Consensus       192 ~~~~~~~~~~-~~L~~L~l~~~~~~---~~--~~~~l~~~~l~~l~~~~~~~~~~~--------------------~i~~  245 (606)
T 3t6q_A          192 AGIEPGAFDS-AVFQSLNFGGTQNL---LV--IFKGLKNSTIQSLWLGTFEDMDDE--------------------DISP  245 (606)
T ss_dssp             CEECTTTTTT-CEEEEEECTTCSCH---HH--HHHHTTTCEEEEEECCCCTTSCCC--------------------CCCG
T ss_pred             CccChhHhhh-ccccccccCCchhH---HH--Hhhhccccchhheechhhcccccc--------------------ccCh
Confidence            7665555443 56777777777521   11  133344433333322211111100                    00 0


Q ss_pred             hhhhcCC--cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113          444 NFLKNQH--HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV  521 (887)
Q Consensus       444 ~~l~~~~--~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  521 (887)
                      ..+..+.  +|+.|++++|.+++..+..+..  +++|++|++++|.++.++...    ...+                  
T Consensus       246 ~~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~l~~lp~~l----~~l~------------------  301 (606)
T 3t6q_A          246 AVFEGLCEMSVESINLQKHYFFNISSNTFHC--FSGLQELDLTATHLSELPSGL----VGLS------------------  301 (606)
T ss_dssp             GGGGGGGGSEEEEEECTTCCCSSCCTTTTTT--CTTCSEEECTTSCCSCCCSSC----CSCT------------------
T ss_pred             hHhchhhcCceeEEEeecCccCccCHHHhcc--ccCCCEEeccCCccCCCChhh----cccc------------------
Confidence            1111111  5666666666666555555544  666666666666666444321    1112                  


Q ss_pred             CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCc-ccccCCcceEEecCCCcccccC--CccccCCCc
Q 040113          522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRC-LGSFSDKLSILDLRANNFFGTI--PNTFMKESR  598 (887)
Q Consensus       522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~-l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~~  598 (887)
                         +++++++++|.+.+..|..+..+++|++|++++|.+.+.+|.. +..++ +|++|++++|++++..  +..+..+++
T Consensus       302 ---~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~~~l~~  377 (606)
T 3t6q_A          302 ---TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE-NLRELDLSHDDIETSDCCNLQLRNLSH  377 (606)
T ss_dssp             ---TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCT-TCCEEECCSSCCCEEEESTTTTTTCTT
T ss_pred             ---cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhccC-cCCEEECCCCccccccCcchhcccCCC
Confidence               2333333334444445566788899999999999988777654 77777 7999999999998776  778889999


Q ss_pred             ccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCc-cccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEE
Q 040113          599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS-WLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIID  677 (887)
Q Consensus       599 L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  677 (887)
                      |++|++++|++.+..|..|..+++|++|++++|++.+..+. .+..+++|++|++++|++.+..+..+  ..+++|++|+
T Consensus       378 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~  455 (606)
T 3t6q_A          378 LQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLF--DGLPALQHLN  455 (606)
T ss_dssp             CCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTT--TTCTTCCEEE
T ss_pred             CCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHH--hCCCCCCEEE
Confidence            99999999999988899999999999999999999887654 48899999999999999988877655  6789999999


Q ss_pred             cCCCcCccc-CCh-hhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEee
Q 040113          678 LSNNRFTGK-LPS-KSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILS  755 (887)
Q Consensus       678 Ls~N~l~~~-ip~-~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls  755 (887)
                      +++|++.+. +|. ..+.                                                   ..+.|+.|+++
T Consensus       456 L~~n~l~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls  484 (606)
T 3t6q_A          456 LQGNHFPKGNIQKTNSLQ---------------------------------------------------TLGRLEILVLS  484 (606)
T ss_dssp             CTTCBCGGGEECSSCGGG---------------------------------------------------GCTTCCEEECT
T ss_pred             CCCCCCCccccccchhhc---------------------------------------------------cCCCccEEECC
Confidence            999998752 221 0010                                                   15679999999


Q ss_pred             cCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccC
Q 040113          756 SNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI  835 (887)
Q Consensus       756 ~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~i  835 (887)
                      +|++++.+|..++.+++|++|+|++|++++..|..+.++++| .|+|++|++++.+|..+..+++|+++++++|++.+..
T Consensus       485 ~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  563 (606)
T 3t6q_A          485 FCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTC  563 (606)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSG
T ss_pred             CCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccC
Confidence            999999999999999999999999999999999999999999 9999999999999999999999999999999999866


Q ss_pred             C
Q 040113          836 P  836 (887)
Q Consensus       836 P  836 (887)
                      +
T Consensus       564 ~  564 (606)
T 3t6q_A          564 S  564 (606)
T ss_dssp             G
T ss_pred             C
Confidence            5

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=1.2e-51  Score=487.77  Aligned_cols=517  Identities=21%  Similarity=0.238  Sum_probs=334.6

Q ss_pred             CCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113          128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN  207 (887)
Q Consensus       128 ~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~  207 (887)
                      ++++|+|++|.+++. .|..|+++++|++|+|++|.+.+..|..|+++++|++|++++|.                    
T Consensus        34 ~l~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~--------------------   92 (606)
T 3t6q_A           34 STECLEFSFNVLPTI-QNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP--------------------   92 (606)
T ss_dssp             TCCEEECTTCCCSEE-CTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------------------
T ss_pred             cCcEEEccCCccCcC-ChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc--------------------
Confidence            677788887777764 46677777777777777777776667667777777777666665                    


Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccC
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSI  287 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  287 (887)
                                +.+..|..++++++|++|++++|.+++..+..++++++|++|++++|.+.+..+..+..+++|++|++++
T Consensus        93 ----------l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  162 (606)
T 3t6q_A           93 ----------LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQN  162 (606)
T ss_dssp             ----------CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCS
T ss_pred             ----------ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEccc
Confidence                      3333344444555555555555555544444455555555555555555442222233355555555555


Q ss_pred             CCCCCccchhhhCCCCCC--EEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCC
Q 040113          288 NNLSGELPTSIQNLVSLE--ELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS  365 (887)
Q Consensus       288 n~l~~~~~~~l~~l~~L~--~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  365 (887)
                      |.+++..+..++.+++|+  +|++++|.+.+..|..  + ....|+.|++++|.   .++..+..+..++...+....+.
T Consensus       163 n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~~~--~-~~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~  236 (606)
T 3t6q_A          163 NAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEPGA--F-DSAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFE  236 (606)
T ss_dssp             SCCCEECHHHHHTTTTCCSEEEECTTCCCCEECTTT--T-TTCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCT
T ss_pred             CcccccChhhhhhhcccceeEEecCCCccCccChhH--h-hhccccccccCCch---hHHHHhhhccccchhheechhhc
Confidence            555544455555555555  5555555555443332  2 22455555555554   12222333333222222111111


Q ss_pred             c-----cCCccccCCC--CCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC
Q 040113          366 G-----RIPSSLRNLT--QLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN  438 (887)
Q Consensus       366 ~-----~~~~~l~~l~--~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~  438 (887)
                      +     ..+..+..+.  +|++|++++|.+.+..+..  +..+++|++|++++|.+                        
T Consensus       237 ~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l------------------------  290 (606)
T 3t6q_A          237 DMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNT--FHCFSGLQELDLTATHL------------------------  290 (606)
T ss_dssp             TSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCTTT--TTTCTTCSEEECTTSCC------------------------
T ss_pred             cccccccChhHhchhhcCceeEEEeecCccCccCHHH--hccccCCCEEeccCCcc------------------------
Confidence            0     0011111111  3444555555444433322  33344444444443322                        


Q ss_pred             CcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccC
Q 040113          439 LIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGP  518 (887)
Q Consensus       439 l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  518 (887)
                       ..+|..+..+++|++|++++|.+.+..|..+..  +++|++|++++|.+..                            
T Consensus       291 -~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~--l~~L~~L~l~~n~~~~----------------------------  339 (606)
T 3t6q_A          291 -SELPSGLVGLSTLKKLVLSANKFENLCQISASN--FPSLTHLSIKGNTKRL----------------------------  339 (606)
T ss_dssp             -SCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGG--CTTCSEEECCSCSSCC----------------------------
T ss_pred             -CCCChhhcccccCCEEECccCCcCcCchhhhhc--cCcCCEEECCCCCccc----------------------------
Confidence             233444455555555555555555544444443  4555444444443331                            


Q ss_pred             CCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCC--CCcccccCCcceEEecCCCcccccCCccccC
Q 040113          519 LPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLL--PRCLGSFSDKLSILDLRANNFFGTIPNTFMK  595 (887)
Q Consensus       519 ~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~--p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~  595 (887)
                                          .++ ..+..+++|++|++++|.+++..  |..+..++ +|++|++++|++.+..|..|..
T Consensus       340 --------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~  398 (606)
T 3t6q_A          340 --------------------ELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLS-HLQSLNLSYNEPLSLKTEAFKE  398 (606)
T ss_dssp             --------------------BCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCT-TCCEEECCSCSCEEECTTTTTT
T ss_pred             --------------------ccchhhhhccCcCCEEECCCCccccccCcchhcccCC-CCCEEECCCCcCCcCCHHHhcC
Confidence                                222 23667888999999999888765  77788887 7999999999999888889999


Q ss_pred             CCcccEEEccCCeeeeeCCcc-ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc-CCCCccccCCCCC
Q 040113          596 ESRLGMIDLSHNLFQGRIPRS-LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI-IREPRIDCGFSKL  673 (887)
Q Consensus       596 l~~L~~L~Ls~N~l~~~~~~~-l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L  673 (887)
                      +++|++|++++|++++..+.. +.++++|++|++++|++.+..|..+..+++|++|++++|++.+. ++.......+++|
T Consensus       399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L  478 (606)
T 3t6q_A          399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRL  478 (606)
T ss_dssp             CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTC
T ss_pred             CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCc
Confidence            999999999999999876654 88999999999999999999899999999999999999999873 2333344778999


Q ss_pred             CEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEE
Q 040113          674 RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSII  753 (887)
Q Consensus       674 ~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~  753 (887)
                      ++|++++|++++..|.. +..                                                   .+.|+.|+
T Consensus       479 ~~L~Ls~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~  506 (606)
T 3t6q_A          479 EILVLSFCDLSSIDQHA-FTS---------------------------------------------------LKMMNHVD  506 (606)
T ss_dssp             CEEECTTSCCCEECTTT-TTT---------------------------------------------------CTTCCEEE
T ss_pred             cEEECCCCccCccChhh-hcc---------------------------------------------------ccCCCEEE
Confidence            99999999998665543 211                                                   46789999


Q ss_pred             eecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCC
Q 040113          754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIP  812 (887)
Q Consensus       754 Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p  812 (887)
                      |++|++++.+|..+.+++.| +|++++|++++..|..++.+++|+.|++++|++.+..+
T Consensus       507 Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          507 LSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            99999999999999999999 99999999999999999999999999999999998665

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=7.4e-51  Score=481.14  Aligned_cols=519  Identities=22%  Similarity=0.206  Sum_probs=325.8

Q ss_pred             CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCC
Q 040113          152 SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSS  231 (887)
Q Consensus       152 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~  231 (887)
                      ++|++|++++|.+.+..+..+.++++|++|++++|.+..+.      +..++++++|++|++++|.+.+..|..|+++++
T Consensus        32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~------~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~  105 (606)
T 3vq2_A           32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE------DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTS  105 (606)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTT
T ss_pred             CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccC------HHHhhchhhcCEeECCCCcccccChhhcCCccc
Confidence            34444444444443333334444444444444444322111      223344444445555555566666777778888


Q ss_pred             CCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCC----E
Q 040113          232 LTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE----E  306 (887)
Q Consensus       232 L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~  306 (887)
                      |++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+.+|+    +
T Consensus       106 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~  185 (606)
T 3vq2_A          106 LENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLS  185 (606)
T ss_dssp             CCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCE
T ss_pred             CCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccce
Confidence            8888888888776666777778888888888887765 4677777777777777777777766666665554443    6


Q ss_pred             EEccCCcCCCCCCchhhccCCCCccEEEccCCCCC-CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCC
Q 040113          307 LDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS-GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQ  385 (887)
Q Consensus       307 L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~  385 (887)
                      |++++|.+++..+..  +. ..+|+.|++++|.+. +..|..+..++.|+.+++..+.+.+.        ..+..     
T Consensus       186 L~l~~n~l~~~~~~~--~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~--------~~l~~-----  249 (606)
T 3vq2_A          186 LDMSLNPIDFIQDQA--FQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDE--------RNLEI-----  249 (606)
T ss_dssp             EECTTCCCCEECTTT--TT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTS--------CCCSC-----
T ss_pred             eeccCCCcceeCccc--cc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccC--------Ccccc-----
Confidence            777777766433322  22 236666666666665 33455556666666655544333211        00000     


Q ss_pred             CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEee-CCCCCc-ccChhhhcCCcccEEecccCccc
Q 040113          386 NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGL-RSCNLI-EFPNFLKNQHHLMLLDLSSNRIH  463 (887)
Q Consensus       386 n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l-~~~~l~-~~~~~l~~~~~L~~L~Ls~n~l~  463 (887)
                        +....     +..+..                       ..++.+.+ ..+.+. .+|. +..+++|+.|++++|.+.
T Consensus       250 --~~~~~-----~~~l~~-----------------------l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~  298 (606)
T 3vq2_A          250 --FEPSI-----MEGLCD-----------------------VTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK  298 (606)
T ss_dssp             --CCGGG-----GTTGGG-----------------------SEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC
T ss_pred             --cChHH-----hhhhhh-----------------------ccHhheeccccccccccccc-cccCCCCCEEEecCccch
Confidence              00000     111000                       01222222 112222 1122 444445555555555443


Q ss_pred             CCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChh
Q 040113          464 GKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSW  543 (887)
Q Consensus       464 ~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~  543 (887)
                       .+| .+..  +++|+.|++++|.+                                                 +.+| .
T Consensus       299 -~l~-~l~~--~~~L~~L~l~~n~l-------------------------------------------------~~lp-~  324 (606)
T 3vq2_A          299 -YLE-DVPK--HFKWQSLSIIRCQL-------------------------------------------------KQFP-T  324 (606)
T ss_dssp             -CCC-CCCT--TCCCSEEEEESCCC-------------------------------------------------SSCC-C
T ss_pred             -hhh-hccc--cccCCEEEcccccC-------------------------------------------------cccc-c
Confidence             222 2222  33333333333333                                                 2333 2


Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccccc--CCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT--IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS  621 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  621 (887)
                      + .+++|++|++++|...+.+  .+..++ +|++|++++|++++.  .+..+..+++|++|++++|.+++ +|..+..++
T Consensus       325 ~-~l~~L~~L~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~  399 (606)
T 3vq2_A          325 L-DLPFLKSLTLTMNKGSISF--KKVALP-SLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLE  399 (606)
T ss_dssp             C-CCSSCCEEEEESCSSCEEC--CCCCCT-TCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCT
T ss_pred             C-CCCccceeeccCCcCccch--hhccCC-CCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCC
Confidence            3 5667777777777544333  445565 678888888877765  36677778888888888888775 456777888


Q ss_pred             CCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCccc-CChhhhhccccch
Q 040113          622 KLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK-LPSKSFLCWNAMK  699 (887)
Q Consensus       622 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-ip~~~~~~~~~l~  699 (887)
                      +|++|++++|++.+..| ..+..+++|++|++++|++.+..+..+  ..+++|++|++++|++++. +|.. +..     
T Consensus       400 ~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~~-----  471 (606)
T 3vq2_A          400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF--LGLTSLNTLKMAGNSFKDNTLSNV-FAN-----  471 (606)
T ss_dssp             TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CTT-----
T ss_pred             CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhh--cCCCCCCEEECCCCcCCCcchHHh-hcc-----
Confidence            88888888888887766 577788888888888888887766655  6778888888888888763 3321 111     


Q ss_pred             hcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCC
Q 040113          700 IVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLD  779 (887)
Q Consensus       700 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls  779 (887)
                                                                    .+.|+.|+|++|++++.+|..++.+++|++|+|+
T Consensus       472 ----------------------------------------------l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls  505 (606)
T 3vq2_A          472 ----------------------------------------------TTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMS  505 (606)
T ss_dssp             ----------------------------------------------CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC
T ss_pred             ----------------------------------------------CCCCCEEECCCCcCCccChhhhcccccCCEEECC
Confidence                                                          4568899999999998889999999999999999


Q ss_pred             CCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCCeeecccCcccccCCC
Q 040113          780 NNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT-FLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       780 ~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~ls~N~l~g~iP~  837 (887)
                      +|++++.+|..|+++++|++|||++|+++ .+|..+..++ +|++|++++|++.+..|.
T Consensus       506 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          506 HNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             SSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             CCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCcc
Confidence            99999999999999999999999999998 5677788886 699999999999986653

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.6e-52  Score=494.53  Aligned_cols=512  Identities=21%  Similarity=0.279  Sum_probs=321.1

Q ss_pred             HHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccc---cceEecCCCCcEEEEEcCCCccccc
Q 040113           40 DDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSW---DGVECSENTGHVMKLDLSNSCLYGS  116 (887)
Q Consensus        40 ~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w---~gv~c~~~~~~v~~L~L~~~~l~~~  116 (887)
                      ..|+.||.+||.++..+.        |.+....++...+|..   +.+||.|   .||+|+.. ++|++|+|+++.+.|.
T Consensus        29 ~~d~~aL~~~~~~~~~~~--------w~~~~~~~~~~~~W~~---~~~~c~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~   96 (636)
T 4eco_A           29 IKDYLALKEIWDALNGKN--------WSQQGFGTQPGANWNF---NKELDMWGAQPGVSLNSN-GRVTGLSLEGFGASGR   96 (636)
T ss_dssp             HHHHHHHHHHHHHTTGGG--------CCCCC------CCCCC---SSCGGGTTCCTTEEECTT-CCEEEEECTTSCCEEE
T ss_pred             HHHHHHHHHHHHHcCCCC--------cccCCcCCccCCCCCC---CCCcccccCCCCeEEcCC-CCEEEEEecCcccCCc
Confidence            468999999999986531        3344455667789987   6899999   99999876 8999999999999999


Q ss_pred             ccCCcccccCCCCCeEECCCCCCC------C-----CCCCccccCCCCCCEEECCCCCCCccCCccccC-CCCCcEEEcc
Q 040113          117 INSSSSLFKLVHLEWLNLAFNDFK------S-----SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE-LVNLVSLDLS  184 (887)
Q Consensus       117 ~~~~~~l~~l~~L~~L~L~~n~~~------~-----~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~-l~~L~~L~l~  184 (887)
                      +++  +++++++|++|+|++|.+.      +     ..+|...  +..|+ ++++++.+.+.+|..+.. +..+..+++.
T Consensus        97 lp~--~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~  171 (636)
T 4eco_A           97 VPD--AIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQ  171 (636)
T ss_dssp             ECG--GGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTT
T ss_pred             CCh--HHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcc
Confidence            987  9999999999999999762      1     0244433  56677 888888887777766653 2333333333


Q ss_pred             CCCCCCccccCCChHHHhhcCCCCCEEEcc--CCCCCCCchhhhcCCCCCCEEEcccCCCCCc-----------------
Q 040113          185 LNSGYGLELQKPNFANLVEKLSNLETLDLG--YVSIRSTIPHNLANLSSLTFLSLHSCGLQGR-----------------  245 (887)
Q Consensus       185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~--~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-----------------  245 (887)
                      ...+..            .....++.+.+.  .|++++ +|..++++++|++|++++|.+++.                 
T Consensus       172 ~~~~~~------------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~  238 (636)
T 4eco_A          172 QKSIKK------------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQY  238 (636)
T ss_dssp             SCCCCC------------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHH
T ss_pred             cccccc------------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhccc
Confidence            222110            011122222222  456666 677777777777777777777764                 


Q ss_pred             cccccC--CCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCC-ccchhhhCC------CCCCEEEccCCcCC
Q 040113          246 IQSSLG--NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSG-ELPTSIQNL------VSLEELDLSFNKLS  315 (887)
Q Consensus       246 ~~~~l~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~-~~~~~l~~l------~~L~~L~L~~n~l~  315 (887)
                      +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|. +++ .+|..++.+      ++|++|++++|+++
T Consensus       239 ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~  318 (636)
T 4eco_A          239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK  318 (636)
T ss_dssp             TTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS
T ss_pred             CchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC
Confidence            777777  78888888888887777777777788888888888887 776 677777665      77888888888877


Q ss_pred             CCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCC-CCEEEcCCCCCccccch
Q 040113          316 GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ-LITLDLSQNSYRGTMEL  394 (887)
Q Consensus       316 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~-L~~L~L~~n~l~~~~~~  394 (887)
                       .+|....++++++|++|++++|.++|.+| .++.+++|++|++++|.++ .+|..+..+++ |++|++++|.++ ..|.
T Consensus       319 -~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~  394 (636)
T 4eco_A          319 -TFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPN  394 (636)
T ss_dssp             -SCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCS
T ss_pred             -ccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccch
Confidence             67761127777888888888888877777 7777778888888888777 67777777777 888888888777 3443


Q ss_pred             hhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhh-------cCCcccEEecccCcccCCCC
Q 040113          395 DFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLK-------NQHHLMLLDLSSNRIHGKIP  467 (887)
Q Consensus       395 ~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~-------~~~~L~~L~Ls~n~l~~~~p  467 (887)
                      .+....+++|++|++++|.+....                        |..+.       .+++|+.|++++|+++ .+|
T Consensus       395 ~~~~~~l~~L~~L~Ls~N~l~~~~------------------------p~~l~~~~~~~~~~~~L~~L~Ls~N~l~-~lp  449 (636)
T 4eco_A          395 IFDAKSVSVMSAIDFSYNEIGSVD------------------------GKNFDPLDPTPFKGINVSSINLSNNQIS-KFP  449 (636)
T ss_dssp             CCCTTCSSCEEEEECCSSCTTTTT------------------------TCSSCTTCSSCCCCCCEEEEECCSSCCC-SCC
T ss_pred             hhhhcccCccCEEECcCCcCCCcc------------------------hhhhcccccccccCCCCCEEECcCCccC-cCC
Confidence            311222347888888887654332                        11122       3345566666666655 233


Q ss_pred             ccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCc
Q 040113          468 SWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKL  547 (887)
Q Consensus       468 ~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l  547 (887)
                      ..++. .+++|++|++++|.++.++...+...                                         +..+.++
T Consensus       450 ~~~~~-~l~~L~~L~Ls~N~l~~i~~~~~~~~-----------------------------------------~~~~~~l  487 (636)
T 4eco_A          450 KELFS-TGSPLSSINLMGNMLTEIPKNSLKDE-----------------------------------------NENFKNT  487 (636)
T ss_dssp             THHHH-TTCCCSEEECCSSCCSBCCSSSSEET-----------------------------------------TEECTTG
T ss_pred             HHHHc-cCCCCCEEECCCCCCCCcCHHHhccc-----------------------------------------ccccccc
Confidence            32211 14555555555555553332211100                                         0012233


Q ss_pred             CCCCeEEcCCCccCCCCCCccc--ccCCcceEEecCCCcccccCCccccCCCcccEEEcc------CCeeeeeCCccccC
Q 040113          548 DSLEILVLSHNNLSGLLPRCLG--SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS------HNLFQGRIPRSLIN  619 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~--~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls------~N~l~~~~~~~l~~  619 (887)
                      ++|++|++++|+++ .+|..+.  .++ +|+.|++++|++++ +|..+..+++|+.|+++      +|++.+.+|..+.+
T Consensus       488 ~~L~~L~Ls~N~l~-~lp~~~~~~~l~-~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~  564 (636)
T 4eco_A          488 YLLTSIDLRFNKLT-KLSDDFRATTLP-YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITL  564 (636)
T ss_dssp             GGCCEEECCSSCCC-BCCGGGSTTTCT-TCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGG
T ss_pred             CCccEEECcCCcCC-ccChhhhhccCC-CcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhc
Confidence            45666666666665 4555554  444 46666666666655 45555555666666663      44555555555555


Q ss_pred             CCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccc
Q 040113          620 CSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFY  658 (887)
Q Consensus       620 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  658 (887)
                      +++|++|+|++|++ +.+|..+.  ++|++|++++|++.
T Consensus       565 l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          565 CPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             CSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            55555555555555 23343333  45555555555444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.1e-50  Score=477.22  Aligned_cols=520  Identities=20%  Similarity=0.186  Sum_probs=358.7

Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  286 (887)
                      ++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|.++++|++|++++|.+.+..|..|+++++|++|+++
T Consensus        33 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~  112 (606)
T 3vq2_A           33 STKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAV  112 (606)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEECT
T ss_pred             CcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEcc
Confidence            34444444444444444455555555555555555555555555555556666665555555555555556666666666


Q ss_pred             CCCCCCccchhhhCCCCCCEEEccCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc----EEEccC
Q 040113          287 INNLSGELPTSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE----VLAIGR  361 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~----~L~L~~  361 (887)
                      +|.+.+..+..++++++|++|++++|.+.+ .+|..  ++++++|++|++++|++++..+..++.+++|+    +|++++
T Consensus       113 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~~  190 (606)
T 3vq2_A          113 ETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAY--FSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSL  190 (606)
T ss_dssp             TSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGG--GGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECTT
T ss_pred             CCccccccccccCCCCCCCEEeCCCCcccceechHh--HhhcCCCCEEEccCCcceecChhhhhhhhccccccceeeccC
Confidence            665555444555556666666666665553 34544  55566666666666666555555454444433    566666


Q ss_pred             CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc
Q 040113          362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE  441 (887)
Q Consensus       362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~  441 (887)
                      |.+++..+..+... +|++|++++|.+.+..... .+..++.|+.+++..+.+..........               ..
T Consensus       191 n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~-~~~~l~~L~~l~l~~~~~~~~~~l~~~~---------------~~  253 (606)
T 3vq2_A          191 NPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKT-CLQNLAGLHVHRLILGEFKDERNLEIFE---------------PS  253 (606)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHH-HHHTTTTCEEEEEEEECCTTSCCCSCCC---------------GG
T ss_pred             CCcceeCcccccCc-eeeeeeccCCccchhHHHH-HhccccccccccccccccccCCcccccC---------------hH
Confidence            66664444433333 6666666666665332222 2566666666666544222211110000               01


Q ss_pred             cChhhhcCCcccEEec-ccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113          442 FPNFLKNQHHLMLLDL-SSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP  520 (887)
Q Consensus       442 ~~~~l~~~~~L~~L~L-s~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  520 (887)
                      .+..+..+ .++.+++ ..+.+.+.+|. +..  +++|+.|++++|.+..+                             
T Consensus       254 ~~~~l~~l-~l~~l~l~~~~~~~~~~~~-~~~--l~~L~~L~l~~~~~~~l-----------------------------  300 (606)
T 3vq2_A          254 IMEGLCDV-TIDEFRLTYTNDFSDDIVK-FHC--LANVSAMSLAGVSIKYL-----------------------------  300 (606)
T ss_dssp             GGTTGGGS-EEEEEEECCCTTCCGGGGS-CGG--GTTCSEEEEESCCCCCC-----------------------------
T ss_pred             Hhhhhhhc-cHhheeccccccccccccc-ccc--CCCCCEEEecCccchhh-----------------------------
Confidence            11222222 4666666 66666666665 333  56666666666554432                             


Q ss_pred             CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113          521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG  600 (887)
Q Consensus       521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  600 (887)
                                          | .+..+++|++|++++|.+ +.+| .+ .++ +|++|++++|+..+..  .+..+++|+
T Consensus       301 --------------------~-~l~~~~~L~~L~l~~n~l-~~lp-~~-~l~-~L~~L~l~~n~~~~~~--~~~~l~~L~  353 (606)
T 3vq2_A          301 --------------------E-DVPKHFKWQSLSIIRCQL-KQFP-TL-DLP-FLKSLTLTMNKGSISF--KKVALPSLS  353 (606)
T ss_dssp             --------------------C-CCCTTCCCSEEEEESCCC-SSCC-CC-CCS-SCCEEEEESCSSCEEC--CCCCCTTCC
T ss_pred             --------------------h-hccccccCCEEEcccccC-cccc-cC-CCC-ccceeeccCCcCccch--hhccCCCCC
Confidence                                2 356688999999999999 6888 44 777 7999999999766554  577899999


Q ss_pred             EEEccCCeeeee--CCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEc
Q 040113          601 MIDLSHNLFQGR--IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL  678 (887)
Q Consensus       601 ~L~Ls~N~l~~~--~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  678 (887)
                      +|++++|++++.  .|..+..+++|++|++++|++++. |..+..+++|++|++++|++.+..+.. .+..+++|+.|++
T Consensus       354 ~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l  431 (606)
T 3vq2_A          354 YLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIM-SANFMGLEELQHLDFQHSTLKRVTEFS-AFLSLEKLLYLDI  431 (606)
T ss_dssp             EEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEE-CCCCTTCTTCCEEECTTSEEESTTTTT-TTTTCTTCCEEEC
T ss_pred             EEECcCCccCCCcchhhhhccCCcccEeECCCCccccc-hhhccCCCCCCeeECCCCccCCccChh-hhhccccCCEEEC
Confidence            999999999977  488899999999999999999885 588999999999999999999887632 2268899999999


Q ss_pred             CCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc
Q 040113          679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR  758 (887)
Q Consensus       679 s~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  758 (887)
                      ++|++.+..|.. +..                                                   .+.|+.|++++|.
T Consensus       432 ~~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~l~~n~  459 (606)
T 3vq2_A          432 SYTNTKIDFDGI-FLG---------------------------------------------------LTSLNTLKMAGNS  459 (606)
T ss_dssp             TTSCCEECCTTT-TTT---------------------------------------------------CTTCCEEECTTCE
T ss_pred             cCCCCCccchhh-hcC---------------------------------------------------CCCCCEEECCCCc
Confidence            999998766643 111                                                   4678999999999


Q ss_pred             CCc-cChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113          759 FDG-MIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       759 l~~-~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      +++ .+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..++.+++|++|++++|+++ .+|.
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            998 47889999999999999999999999999999999999999999999999999999999999999999999 5776


Q ss_pred             C-CcCc-cccccccCCCcCCCCCCC
Q 040113          838 G-RQFA-TFDNSSFESNSGLCGRPL  860 (887)
Q Consensus       838 ~-~~~~-~~~~~~~~~n~~lcg~~~  860 (887)
                      . ..+. .+....+.||+..|++++
T Consensus       539 ~~~~l~~~L~~l~l~~N~~~c~c~~  563 (606)
T 3vq2_A          539 ILQHFPKSLAFFNLTNNSVACICEH  563 (606)
T ss_dssp             CGGGSCTTCCEEECCSCCCCCSSTT
T ss_pred             hHhhhcccCcEEEccCCCcccCCcc
Confidence            5 1222 244557788998887764

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-49  Score=485.87  Aligned_cols=543  Identities=24%  Similarity=0.270  Sum_probs=327.0

Q ss_pred             CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCCh-HHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113          152 SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNF-ANLVEKLSNLETLDLGYVSIRSTIPHNLANLS  230 (887)
Q Consensus       152 ~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  230 (887)
                      ++|++|||++|.+.+..|..+.++++|++|++++|...      ..+ +..++++++|++|+|++|.+.+..|..|++++
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~------~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~   97 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTP------LTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF   97 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCC------CEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCc------cccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence            45556666666555555555555555555555555310      111 33345555555555555556666666677777


Q ss_pred             CCCEEEcccCCCCCccccc--cCCCCCCcEEeCcCCCCCCcch-hhccCCCCCCEEEccCCCCCCccchhhhCC--CCCC
Q 040113          231 SLTFLSLHSCGLQGRIQSS--LGNLSKLLHLDLSLNELLGELP-VSIGNLHSLKKLDLSINNLSGELPTSIQNL--VSLE  305 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~Ls~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~  305 (887)
                      +|++|++++|.+.+.++..  +.++++|++|++++|.+.+..+ ..|+++++|++|++++|.+++..+..+..+  ++|+
T Consensus        98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~  177 (844)
T 3j0a_A           98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS  177 (844)
T ss_dssp             SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred             ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence            7777777777776654443  6667777777777776665433 456666666666666666666666666555  5666


Q ss_pred             EEEccCCcCCCCCCchhhccCCCC------ccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCC
Q 040113          306 ELDLSFNKLSGEFPWSIVIGNFTQ------LQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLI  379 (887)
Q Consensus       306 ~L~L~~n~l~~~~~~~~~~~~l~~------L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~  379 (887)
                      .|++++|.+.+..+..  ++.+++      |+.|++++|.+++..+..+...                     .....++
T Consensus       178 ~L~L~~n~l~~~~~~~--~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~---------------------l~~~~l~  234 (844)
T 3j0a_A          178 FFSLAANSLYSRVSVD--WGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNA---------------------ISKSQAF  234 (844)
T ss_dssp             CCEECCSBSCCCCCCC--CCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGT---------------------SCSCCBS
T ss_pred             eEECCCCccccccccc--hhhcCCccccCceeEEecCCCcCchhHHHHHHhh---------------------cCccccc
Confidence            6666666666555433  333322      4444444444443333332211                     0112344


Q ss_pred             EEEcCCCCC---------ccccchhhhhcC--CCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc-cChhhh
Q 040113          380 TLDLSQNSY---------RGTMELDFLLVS--LKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE-FPNFLK  447 (887)
Q Consensus       380 ~L~L~~n~l---------~~~~~~~~~l~~--l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~-~~~~l~  447 (887)
                      .+.++.+..         .+.....  +..  .++|+.|++++|                         .+.. .+..+.
T Consensus       235 ~L~l~~~~~~~~~~~~~l~~~~~~~--f~~l~~~~L~~L~Ls~n-------------------------~l~~~~~~~~~  287 (844)
T 3j0a_A          235 SLILAHHIMGAGFGFHNIKDPDQNT--FAGLARSSVRHLDLSHG-------------------------FVFSLNSRVFE  287 (844)
T ss_dssp             EEECCSSCCBCSSSCSSSTTGGGTT--TTTTTTSCCCEEECTTC-------------------------CCCEECSCCSS
T ss_pred             ceecccccccccccccccCCCChhh--hhccccCCccEEECCCC-------------------------cccccChhhhh
Confidence            444432221         1111100  111  122222222222                         2221 122334


Q ss_pred             cCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113          448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV  527 (887)
Q Consensus       448 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  527 (887)
                      .+++|+.|++++|++.+..|..+..  +++|++|++++|                                         
T Consensus       288 ~l~~L~~L~L~~n~i~~~~~~~~~~--l~~L~~L~Ls~N-----------------------------------------  324 (844)
T 3j0a_A          288 TLKDLKVLNLAYNKINKIADEAFYG--LDNLQVLNLSYN-----------------------------------------  324 (844)
T ss_dssp             SCCCCCEEEEESCCCCEECTTTTTT--CSSCCEEEEESC-----------------------------------------
T ss_pred             cCCCCCEEECCCCcCCCCChHHhcC--CCCCCEEECCCC-----------------------------------------
Confidence            4444444444444444444433332  333333333333                                         


Q ss_pred             EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCC
Q 040113          528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN  607 (887)
Q Consensus       528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  607 (887)
                             .+.+..|..+..+++|+.|++++|.+.+..+..+..++ +|++|++++|.+++.     ..+++|+.|++++|
T Consensus       325 -------~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~-~L~~L~Ls~N~l~~i-----~~~~~L~~L~l~~N  391 (844)
T 3j0a_A          325 -------LLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLE-KLQTLDLRDNALTTI-----HFIPSIPDIFLSGN  391 (844)
T ss_dssp             -------CCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCC-CCCEEEEETCCSCCC-----SSCCSCSEEEEESC
T ss_pred             -------CCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCC-CCCEEECCCCCCCcc-----cCCCCcchhccCCC
Confidence                   33334455677788899999999988877777788887 799999999888743     23778888999999


Q ss_pred             eeeeeCCccccCCCCCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCccc
Q 040113          608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGK  686 (887)
Q Consensus       608 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~  686 (887)
                      +++ .+|..   ..+++.|++++|++.+... ..+..+++|++|++++|++++..+... ...+++|+.|++++|.+++.
T Consensus       392 ~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~~~~L~~L~Ls~N~l~~~  466 (844)
T 3j0a_A          392 KLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQT-PSENPSLEQLFLGENMLQLA  466 (844)
T ss_dssp             CCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSS-SCSCTTCCBCEEESCCCSSS
T ss_pred             Ccc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccc-cccCCccccccCCCCccccc
Confidence            888 34433   4678888999998887632 235678889999999998887644322 24578888889988888733


Q ss_pred             CChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhh
Q 040113          687 LPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTS  766 (887)
Q Consensus       687 ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~  766 (887)
                      .+.....                                               ....-.+.|+.|+|++|++++.+|..
T Consensus       467 ~~~~~~~-----------------------------------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~  499 (844)
T 3j0a_A          467 WETELCW-----------------------------------------------DVFEGLSHLQVLYLNHNYLNSLPPGV  499 (844)
T ss_dssp             CCSCCCS-----------------------------------------------SCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred             cccccch-----------------------------------------------hhhcCcccccEEECCCCcccccChhH
Confidence            2211000                                               00001466888999999999888888


Q ss_pred             hhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccc
Q 040113          767 IANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDN  846 (887)
Q Consensus       767 l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~  846 (887)
                      +..+++|+.|+|++|++++..|..+.  ++|+.|||++|++++.+|..+.   +|+++++++|++.+..+-    ..|..
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~l~l~~Np~~C~c~~----~~f~~  570 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSVLDITHNKFICECEL----STFIN  570 (844)
T ss_dssp             SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCEEEEEEECCCCSSSC----CSHHH
T ss_pred             ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCEEEecCCCccccccc----HHHHH
Confidence            88899999999999999887777666  8899999999999988887654   688899999988876552    22322


Q ss_pred             cccCCCcCCCCCCCCCCCCCC
Q 040113          847 SSFESNSGLCGRPLSRECESD  867 (887)
Q Consensus       847 ~~~~~n~~lcg~~~~~~c~~~  867 (887)
                      ....+|..+||.+....|..+
T Consensus       571 ~~~~~~~~~~~~~~~~~C~~p  591 (844)
T 3j0a_A          571 WLNHTNVTIAGPPADIYCVYP  591 (844)
T ss_dssp             HHHHTTTTTCCCGGGCCCSSC
T ss_pred             HHHhcCcccccccccCccCCc
Confidence            223456667776666667643

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.3e-48  Score=477.16  Aligned_cols=525  Identities=21%  Similarity=0.220  Sum_probs=316.5

Q ss_pred             ccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccC
Q 040113           89 CSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQI  168 (887)
Q Consensus        89 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~  168 (887)
                      |+|..|-+  ...++++|+|++|.+.+..+.  .+.++++|++|+|++|.+.+...|..|+++++|++|+|++|.+.+..
T Consensus        14 ~~L~~vP~--lp~~l~~LdLs~N~i~~i~~~--~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~   89 (844)
T 3j0a_A           14 CNLTQVPQ--VLNTTERLLLSFNYIRTVTAS--SFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLH   89 (844)
T ss_dssp             CCSSCCCS--SCTTCCEEEEESCCCCEECSS--SCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEEC
T ss_pred             CCCCCCCC--CCCCcCEEECCCCcCCccChh--HCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccC
Confidence            45555555  335667777777766655444  66667777777777765443312556667777777777777766666


Q ss_pred             CccccCCCCCcEEEccCCCCCCccccCCChHH--HhhcCCCCCEEEccCCCCCCCch-hhhcCCCCCCEEEcccCCCCCc
Q 040113          169 PSEILELVNLVSLDLSLNSGYGLELQKPNFAN--LVEKLSNLETLDLGYVSIRSTIP-HNLANLSSLTFLSLHSCGLQGR  245 (887)
Q Consensus       169 p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~  245 (887)
                      |..++++++|++|++++|.+..      .++.  .++++++|++|++++|.+.+..+ ..++++++|++|++++|.+.+.
T Consensus        90 p~~~~~l~~L~~L~Ls~n~l~~------~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           90 PDAFQGLFHLFELRLYFCGLSD------AVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             TTSSCSCSSCCCEECTTCCCSS------CCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             HhHccCCcccCEeeCcCCCCCc------ccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            6666667777777776665322      1111  25566666666666666655443 3566666666666666666655


Q ss_pred             cccccCCC--CCCcEEeCcCCCCCCcchhhccCCCC------CCEEEccCCCCCCccchhhhCC---CCCCEEEccCCcC
Q 040113          246 IQSSLGNL--SKLLHLDLSLNELLGELPVSIGNLHS------LKKLDLSINNLSGELPTSIQNL---VSLEELDLSFNKL  314 (887)
Q Consensus       246 ~~~~l~~l--~~L~~L~Ls~n~l~~~~p~~l~~l~~------L~~L~L~~n~l~~~~~~~l~~l---~~L~~L~L~~n~l  314 (887)
                      .+..+..+  ++|++|++++|.+.+..|..++.+++      |++|++++|.+.+..+..+...   .+++.|.++.+..
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            55555554  56666666666666555555444443      6666666666555555444332   3455555542221


Q ss_pred             C---------CCCCchhhccCC--CCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEc
Q 040113          315 S---------GEFPWSIVIGNF--TQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL  383 (887)
Q Consensus       315 ~---------~~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L  383 (887)
                      .         +.....  +.++  ++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++
T Consensus       244 ~~~~~~~~l~~~~~~~--f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L  321 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNT--FAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNL  321 (844)
T ss_dssp             BCSSSCSSSTTGGGTT--TTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEE
T ss_pred             cccccccccCCCChhh--hhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEEC
Confidence            1         100101  1111  34445555555444444444444444555555555444444444444444444444


Q ss_pred             CCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCccc
Q 040113          384 SQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH  463 (887)
Q Consensus       384 ~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~  463 (887)
                      ++|.+.+..+..  +..+++|+.|++++|.+...+                        +..+..+++|+.|++++|.++
T Consensus       322 s~N~l~~~~~~~--~~~l~~L~~L~L~~N~i~~~~------------------------~~~~~~l~~L~~L~Ls~N~l~  375 (844)
T 3j0a_A          322 SYNLLGELYSSN--FYGLPKVAYIDLQKNHIAIIQ------------------------DQTFKFLEKLQTLDLRDNALT  375 (844)
T ss_dssp             ESCCCSCCCSCS--CSSCTTCCEEECCSCCCCCCC------------------------SSCSCSCCCCCEEEEETCCSC
T ss_pred             CCCCCCccCHHH--hcCCCCCCEEECCCCCCCccC------------------------hhhhcCCCCCCEEECCCCCCC
Confidence            444444333322  334444444444444322211                        123444555555555555554


Q ss_pred             CCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCcccccc-CCh
Q 040113          464 GKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGE-IPS  542 (887)
Q Consensus       464 ~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~-~~~  542 (887)
                      +...       +++|+.|++++|+++.+                            |.....+..+++++|++.+. .+.
T Consensus       376 ~i~~-------~~~L~~L~l~~N~l~~l----------------------------~~~~~~l~~L~ls~N~l~~l~~~~  420 (844)
T 3j0a_A          376 TIHF-------IPSIPDIFLSGNKLVTL----------------------------PKINLTANLIHLSENRLENLDILY  420 (844)
T ss_dssp             CCSS-------CCSCSEEEEESCCCCCC----------------------------CCCCTTCCEEECCSCCCCSSTTHH
T ss_pred             cccC-------CCCcchhccCCCCcccc----------------------------cccccccceeecccCccccCchhh
Confidence            2111       34455555555555433                            22234455555555555543 223


Q ss_pred             hhhCcCCCCeEEcCCCccCCCCCC-cccccCCcceEEecCCCccc-----ccCCccccCCCcccEEEccCCeeeeeCCcc
Q 040113          543 WLCKLDSLEILVLSHNNLSGLLPR-CLGSFSDKLSILDLRANNFF-----GTIPNTFMKESRLGMIDLSHNLFQGRIPRS  616 (887)
Q Consensus       543 ~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~L~~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  616 (887)
                      .+..+++|+.|++++|++++..+. .+..++ +|+.|++++|.++     +..+..|..+++|+.|+|++|++++..|..
T Consensus       421 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~-~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~  499 (844)
T 3j0a_A          421 FLLRVPHLQILILNQNRFSSCSGDQTPSENP-SLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGV  499 (844)
T ss_dssp             HHTTCTTCCEEEEESCCCCCCCSSSSSCSCT-TCCBCEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTS
T ss_pred             hhhcCCccceeeCCCCcccccccccccccCC-ccccccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhH
Confidence            456889999999999999866544 234444 7999999999987     444567888999999999999999998889


Q ss_pred             ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113          617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC  694 (887)
Q Consensus       617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  694 (887)
                      |.++++|+.|+|++|++++..+..+.  ++|+.|++++|++++..+..+     .+|+.+++++|++.+.++...|..
T Consensus       500 ~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~-----~~L~~l~l~~Np~~C~c~~~~f~~  570 (844)
T 3j0a_A          500 FSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF-----VSLSVLDITHNKFICECELSTFIN  570 (844)
T ss_dssp             SSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC-----SSCCEEEEEEECCCCSSSCCSHHH
T ss_pred             ccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh-----CCcCEEEecCCCcccccccHHHHH
Confidence            99999999999999999998777766  899999999999998877653     589999999999998777554443

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.6e-48  Score=466.51  Aligned_cols=510  Identities=22%  Similarity=0.283  Sum_probs=279.9

Q ss_pred             CCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCC----CCCCCccc------------cceEecCCCC
Q 040113           38 CHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEE----GNIDCCSW------------DGVECSENTG  101 (887)
Q Consensus        38 ~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~----~~~~~c~w------------~gv~c~~~~~  101 (887)
                      +..+|++||++||+++.++                     +|+...    ...++|+|            .||+|+. .+
T Consensus       266 ~~~~d~~ALl~~k~~l~~~---------------------~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~  323 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK---------------------NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NG  323 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG---------------------GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TS
T ss_pred             cchHHHHHHHHHHHHcCCC---------------------CCCcCCCcccccCCccccccccccccccCcCceEecC-CC
Confidence            3467999999999998542                     454320    02233899            9999987 48


Q ss_pred             cEEEEEcCCCcccccccCCcccccCCCCCeEEC-CCCCCCCCCCCccccCC----C-----CCCE------EEC-CCCCC
Q 040113          102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNL-AFNDFKSSEIPSEIINL----S-----RLSY------LNL-SHSSF  164 (887)
Q Consensus       102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L-~~n~~~~~~lp~~~~~l----~-----~L~~------L~L-s~n~~  164 (887)
                      +|+.|+|+++.+.|.+++  +++++++|++|+| ++|.+.+. .|-.....    .     .++.      ++. ....+
T Consensus       324 ~V~~L~Ls~~~L~G~ip~--~l~~L~~L~~LdLss~N~lsG~-~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~  400 (876)
T 4ecn_A          324 RVTGLSLAGFGAKGRVPD--AIGQLTELKVLSFGTHSETVSG-RLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNL  400 (876)
T ss_dssp             CEEEEECTTTCCEEEECG--GGGGCTTCCEEESCCTTHHHHT-TCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGS
T ss_pred             CEEEEECccCCCCCcCch--HHhccccceEeeeccccccccc-ccccccccccccchhHHHHHHHhhhhhhhccCcchhh
Confidence            999999999999999987  9999999999999 88876554 22110000    0     0000      000 00000


Q ss_pred             CccC-----------CccccCCCCCcEEEccC--CCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC-----------
Q 040113          165 FGQI-----------PSEILELVNLVSLDLSL--NSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS-----------  220 (887)
Q Consensus       165 ~~~~-----------p~~l~~l~~L~~L~l~~--n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-----------  220 (887)
                      .+.+           +........++.+.+..  |.   +    ..+|..++++++|++|+|++|.+++           
T Consensus       401 s~l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~---L----~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s  473 (876)
T 4ecn_A          401 SDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNR---I----TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDAN  473 (876)
T ss_dssp             CHHHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCE---E----EEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTT
T ss_pred             hHHHHHHhhhCccccccccccccchhhceeccccCc---c----cchhHHHhcCCCCCEEECcCCcCCCCcccccccccc
Confidence            0000           00001111122222211  21   1    1145556666666666666666665           


Q ss_pred             ------Cchhhhc--CCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC-CCC-cchhhccCCC-------CCCEE
Q 040113          221 ------TIPHNLA--NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE-LLG-ELPVSIGNLH-------SLKKL  283 (887)
Q Consensus       221 ------~~~~~l~--~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~-~~p~~l~~l~-------~L~~L  283 (887)
                            .+|..++  ++++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..+++++       +|++|
T Consensus       474 ~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L  553 (876)
T 4ecn_A          474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIF  553 (876)
T ss_dssp             SHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEE
T ss_pred             cccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEE
Confidence                  3666655  67777777777777666677667777777777777776 665 5665554443       66677


Q ss_pred             EccCCCCCCccch--hhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCC-ccEEEcc
Q 040113          284 DLSINNLSGELPT--SIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS-LEVLAIG  360 (887)
Q Consensus       284 ~L~~n~l~~~~~~--~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~-L~~L~L~  360 (887)
                      ++++|.++ .+|.  .++++++|++|++++|+++ .+| .  ++.+++|+.|++++|.++ .+|..+..+++ |++|+++
T Consensus       554 ~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~--~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls  627 (876)
T 4ecn_A          554 YMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-A--FGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFS  627 (876)
T ss_dssp             ECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-C--CCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECC
T ss_pred             EeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-h--hcCCCcceEEECcCCccc-cchHHHhhccccCCEEECc
Confidence            77766666 5565  6666666666666666666 555 3  666666666666666666 56666666666 6666666


Q ss_pred             CCcCCccCCccccCCCC--CCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCC
Q 040113          361 RCNFSGRIPSSLRNLTQ--LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCN  438 (887)
Q Consensus       361 ~n~i~~~~~~~l~~l~~--L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~  438 (887)
                      +|.+. .+|..+..++.  |+.|++++|.+.+..+..   .                   ........++|+.|++++|.
T Consensus       628 ~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l---~-------------------~~l~~~~~~~L~~L~Ls~N~  684 (876)
T 4ecn_A          628 HNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNI---S-------------------CSMDDYKGINASTVTLSYNE  684 (876)
T ss_dssp             SSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSC---S-------------------SCTTTCCCCCEEEEECCSSC
T ss_pred             CCCCC-cCchhhhccccCCCCEEECcCCcCCCccccc---h-------------------hhhccccCCCcCEEEccCCc
Confidence            66666 55555554433  666666666665433210   0                   00000012244444444444


Q ss_pred             CcccChhhh-cCCcccEEecccCcccCCCCccccccC------CCCCcEEEccCCcccCccccccccCCccccccEEeCC
Q 040113          439 LIEFPNFLK-NQHHLMLLDLSSNRIHGKIPSWLLDPS------TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLS  511 (887)
Q Consensus       439 l~~~~~~l~-~~~~L~~L~Ls~n~l~~~~p~~~~~~~------~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls  511 (887)
                      +..+|..+. .+++|+.|++++|+++ .+|...+...      +++|+.|+|++|+++                      
T Consensus       685 L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~----------------------  741 (876)
T 4ecn_A          685 IQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT----------------------  741 (876)
T ss_dssp             CCSCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC----------------------
T ss_pred             CCccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc----------------------
Confidence            445554433 4555666666666555 3343322100      002222222222221                      


Q ss_pred             CcccccCCCCCCCCCcEEEccCccccccCChhhh--CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccC
Q 040113          512 SNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI  589 (887)
Q Consensus       512 ~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~  589 (887)
                                                 .+|..+.  .+++|+.|+|++|.+++ +|..+..++ +|+.|+|++|+     
T Consensus       742 ---------------------------~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~-~L~~L~Ls~N~-----  787 (876)
T 4ecn_A          742 ---------------------------SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSS-QLKAFGIRHQR-----  787 (876)
T ss_dssp             ---------------------------CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCT-TCCEEECCCCB-----
T ss_pred             ---------------------------cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCC-CCCEEECCCCC-----
Confidence                                       2333333  45556666666665554 455555555 45555555432     


Q ss_pred             CccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccC
Q 040113          590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCG  669 (887)
Q Consensus       590 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  669 (887)
                                   ++++|++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+  +.
T Consensus       788 -------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~--~~  849 (876)
T 4ecn_A          788 -------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV--CP  849 (876)
T ss_dssp             -------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG--HH
T ss_pred             -------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc--cc
Confidence                         2233666666666666666666666666666 44455443  466666666666655443332  22


Q ss_pred             CCCCCEEEcCCCcC
Q 040113          670 FSKLRIIDLSNNRF  683 (887)
Q Consensus       670 l~~L~~L~Ls~N~l  683 (887)
                      ...+..+.+.+|+.
T Consensus       850 ~~~~~~~~L~~n~~  863 (876)
T 4ecn_A          850 YIEAGMYVLLYDKT  863 (876)
T ss_dssp             HHHTTCCEEECCTT
T ss_pred             cccchheeecCCCc
Confidence            22333444444443

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.5e-46  Score=441.31  Aligned_cols=499  Identities=20%  Similarity=0.230  Sum_probs=289.9

Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccC
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSI  287 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  287 (887)
                      +++|++++|.+++..+..|.++++|++|++++|.+++..+..|.++++|++|++++|.+++..|..|+++++|++|++++
T Consensus        30 l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~  109 (570)
T 2z63_A           30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVE  109 (570)
T ss_dssp             CCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             ccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccc
Confidence            34444444444444444455555555555555555544444455555555555555555444444555555555555555


Q ss_pred             CCCCCccchhhhCCCCCCEEEccCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc----cEEEccCC
Q 040113          288 NNLSGELPTSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL----EVLAIGRC  362 (887)
Q Consensus       288 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~L~~n  362 (887)
                      |.+++..+..++++++|++|++++|.+.+ .+|..  ++++++|++|++++|.+++..+..++.+++|    +.|++++|
T Consensus       110 n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~--~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n  187 (570)
T 2z63_A          110 TNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEY--FSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  187 (570)
T ss_dssp             SCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGG--GGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             cccccCCCccccccccccEEecCCCccceecChhh--hcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCC
Confidence            55554333345555555555555555543 23443  5555555555555555554444445544444    55566666


Q ss_pred             cCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113          363 NFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF  442 (887)
Q Consensus       363 ~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~  442 (887)
                      .+.+..+..+... +|++|++++|..... .....+..++.++.+.+.........         .++  .+....+   
T Consensus       188 ~l~~~~~~~~~~~-~L~~L~l~~n~~~~~-~~~~~~~~l~~l~~~~l~~~~~~~~~---------~l~--~~~~~~~---  251 (570)
T 2z63_A          188 PMNFIQPGAFKEI-RLHKLTLRNNFDSLN-VMKTCIQGLAGLEVHRLVLGEFRNEG---------NLE--KFDKSAL---  251 (570)
T ss_dssp             CCCEECTTTTTTC-EEEEEEEESCCSCTT-HHHHHHHTTTTCEEEEEEEEECCCCS---------SCE--ECCTTTT---
T ss_pred             CceecCHHHhccC-cceeEeccccccccc-chhhhhcCccccceeeeccccccCch---------hhh--hcchhhh---
Confidence            5555555444443 566666665533221 11223555555555544332111110         000  0000000   


Q ss_pred             ChhhhcCCcccEEecccC-cccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113          443 PNFLKNQHHLMLLDLSSN-RIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV  521 (887)
Q Consensus       443 ~~~l~~~~~L~~L~Ls~n-~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  521 (887)
                       ..+..+ .++.++++++ .+.+..|..+..  +++|+.|++++|.++.++                             
T Consensus       252 -~~l~~l-~l~~l~l~~~~~~~~~~~~~~~~--l~~L~~L~l~~~~l~~l~-----------------------------  298 (570)
T 2z63_A          252 -EGLCNL-TIEEFRLAYLDYYLDDIIDLFNC--LTNVSSFSLVSVTIERVK-----------------------------  298 (570)
T ss_dssp             -GGGGGS-EEEEEEEEETTEEESCSTTTTGG--GTTCSEEEEESCEECSCC-----------------------------
T ss_pred             -cccccc-chhhhhhhcchhhhhhchhhhcC--cCcccEEEecCccchhhh-----------------------------
Confidence             111111 3556666666 555666666554  566666666666554332                             


Q ss_pred             CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccE
Q 040113          522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGM  601 (887)
Q Consensus       522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~  601 (887)
                                          ..+..+ +|++|++++|.+. .+|.  ..++ +|+.|++++|.+.+..+.  ..+++|++
T Consensus       299 --------------------~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~-~L~~L~l~~n~~~~~~~~--~~~~~L~~  351 (570)
T 2z63_A          299 --------------------DFSYNF-GWQHLELVNCKFG-QFPT--LKLK-SLKRLTFTSNKGGNAFSE--VDLPSLEF  351 (570)
T ss_dssp             --------------------BCCSCC-CCSEEEEESCBCS-SCCB--CBCS-SCCEEEEESCBSCCBCCC--CBCTTCCE
T ss_pred             --------------------hhhccC-CccEEeeccCccc-ccCc--cccc-ccCEEeCcCCcccccccc--ccCCCCCE
Confidence                                223333 5555555555554 3333  2333 455666666555544433  45556666


Q ss_pred             EEccCCeeeeeC--CccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcC
Q 040113          602 IDLSHNLFQGRI--PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLS  679 (887)
Q Consensus       602 L~Ls~N~l~~~~--~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls  679 (887)
                      |++++|++++..  +..+.++++|++|++++|++.+..+. +..+++|++|++++|++.+..+.. .+..+++|++|+++
T Consensus       352 L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~-~~~~l~~L~~L~l~  429 (570)
T 2z63_A          352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFS-VFLSLRNLIYLDIS  429 (570)
T ss_dssp             EECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSC-TTTTCTTCCEEECT
T ss_pred             EeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchh-hhhcCCCCCEEeCc
Confidence            666666665443  45566666666666666666665443 666667777777777666654422 12556777777777


Q ss_pred             CCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcC
Q 040113          680 NNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRF  759 (887)
Q Consensus       680 ~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l  759 (887)
                      +|++.+..|.. +..                                                   .+.|+.|++++|.+
T Consensus       430 ~n~l~~~~~~~-~~~---------------------------------------------------l~~L~~L~l~~n~l  457 (570)
T 2z63_A          430 HTHTRVAFNGI-FNG---------------------------------------------------LSSLEVLKMAGNSF  457 (570)
T ss_dssp             TSCCEECCTTT-TTT---------------------------------------------------CTTCCEEECTTCEE
T ss_pred             CCcccccchhh-hhc---------------------------------------------------CCcCcEEECcCCcC
Confidence            77776554432 111                                                   35678888888888


Q ss_pred             C-ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113          760 D-GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG  838 (887)
Q Consensus       760 ~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~  838 (887)
                      + +.+|..++.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|..
T Consensus       458 ~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  537 (570)
T 2z63_A          458 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  537 (570)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred             ccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcch
Confidence            7 578888999999999999999999999999999999999999999999998888999999999999999999998865

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=1.2e-45  Score=433.43  Aligned_cols=496  Identities=24%  Similarity=0.274  Sum_probs=337.5

Q ss_pred             CCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCC
Q 040113          153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSL  232 (887)
Q Consensus       153 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  232 (887)
                      ++++|++++|.+.+..+..+.++++|++|++++|.+..+.      +..++++++|++|++++|.+.+..+..|+++++|
T Consensus        29 ~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~------~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L  102 (570)
T 2z63_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIE------DGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL  102 (570)
T ss_dssp             SCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEEC------TTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTC
T ss_pred             cccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccC------cccccCchhCCEEeCcCCcCCccCHhhhcCcccc
Confidence            3444455444444444444444444444444444422221      2234455555555555555666666778888888


Q ss_pred             CEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCC----CEE
Q 040113          233 TFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSL----EEL  307 (887)
Q Consensus       233 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L  307 (887)
                      ++|++++|.+.+..+..++++++|++|++++|.+.+ .+|..++++++|++|++++|.+++..+..++.+++|    ++|
T Consensus       103 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L  182 (570)
T 2z63_A          103 QKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSL  182 (570)
T ss_dssp             CEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEE
T ss_pred             ccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhc
Confidence            888888888886666568888888888888888876 467888888888888888888887777777777777    788


Q ss_pred             EccCCcCCCCCCchhhccCCCCccEEEccCCCCC-CccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCC
Q 040113          308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS-GELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQN  386 (887)
Q Consensus       308 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n  386 (887)
                      ++++|.+.+..+..  +... +|+.|++++|... ..++..+..++.++.+.+....+..        ...++.  +...
T Consensus       183 ~l~~n~l~~~~~~~--~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~--------~~~l~~--~~~~  249 (570)
T 2z63_A          183 DLSLNPMNFIQPGA--FKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN--------EGNLEK--FDKS  249 (570)
T ss_dssp             ECTTCCCCEECTTT--TTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCC--------CSSCEE--CCTT
T ss_pred             ccCCCCceecCHHH--hccC-cceeEecccccccccchhhhhcCccccceeeeccccccC--------chhhhh--cchh
Confidence            88888877655543  4433 6777777777433 2344455556666555543322211        111111  1111


Q ss_pred             CCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC-CCc-ccChhhhcCCcccEEecccCcccC
Q 040113          387 SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC-NLI-EFPNFLKNQHHLMLLDLSSNRIHG  464 (887)
Q Consensus       387 ~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~-~l~-~~~~~l~~~~~L~~L~Ls~n~l~~  464 (887)
                      .          +..++++                       .++.+++..+ .+. .++..+..+++|+.|++++|.+. 
T Consensus       250 ~----------~~~l~~l-----------------------~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-  295 (570)
T 2z63_A          250 A----------LEGLCNL-----------------------TIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-  295 (570)
T ss_dssp             T----------TGGGGGS-----------------------EEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC-
T ss_pred             h----------hcccccc-----------------------chhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch-
Confidence            1          1111111                       1233333333 222 45677888899999999999987 


Q ss_pred             CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhh
Q 040113          465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL  544 (887)
Q Consensus       465 ~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  544 (887)
                      .+|.++..  + +|++|++++|.+..++.                                                   
T Consensus       296 ~l~~~~~~--~-~L~~L~l~~n~~~~l~~---------------------------------------------------  321 (570)
T 2z63_A          296 RVKDFSYN--F-GWQHLELVNCKFGQFPT---------------------------------------------------  321 (570)
T ss_dssp             SCCBCCSC--C-CCSEEEEESCBCSSCCB---------------------------------------------------
T ss_pred             hhhhhhcc--C-CccEEeeccCcccccCc---------------------------------------------------
Confidence            57777765  5 78888887777664332                                                   


Q ss_pred             hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccC--CccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113          545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTI--PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK  622 (887)
Q Consensus       545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~--~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  622 (887)
                      ..+++|+.|++++|.+.+..+.  ..++ +|++|++++|++++..  +..+..+++|++|++++|.+.+..+. +..+++
T Consensus       322 ~~l~~L~~L~l~~n~~~~~~~~--~~~~-~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~  397 (570)
T 2z63_A          322 LKLKSLKRLTFTSNKGGNAFSE--VDLP-SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQ  397 (570)
T ss_dssp             CBCSSCCEEEEESCBSCCBCCC--CBCT-TCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTT
T ss_pred             ccccccCEEeCcCCcccccccc--ccCC-CCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCC
Confidence            1345667777777766655554  4455 6777777777776554  56677778888888888888765554 778888


Q ss_pred             CcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc-ccCChhhhhccccchh
Q 040113          623 LEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT-GKLPSKSFLCWNAMKI  700 (887)
Q Consensus       623 L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~ip~~~~~~~~~l~~  700 (887)
                      |++|++++|++.+..+ ..+..+++|++|++++|++.+..+..+  ..+++|++|++++|+++ +.+|.. +.       
T Consensus       398 L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~p~~-~~-------  467 (570)
T 2z63_A          398 LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT-------  467 (570)
T ss_dssp             CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT-------
T ss_pred             CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhh--hcCCcCcEEECcCCcCccccchhh-hh-------
Confidence            8888888888877655 467788888888888888887766655  67788888888888876 455532 11       


Q ss_pred             cccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCC
Q 040113          701 VNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDN  780 (887)
Q Consensus       701 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~  780 (887)
                                                                  ..+.|+.|++++|++++..|..++++++|++|++++
T Consensus       468 --------------------------------------------~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~  503 (570)
T 2z63_A          468 --------------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMAS  503 (570)
T ss_dssp             --------------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             --------------------------------------------cccCCCEEECCCCccccCChhhhhcccCCCEEeCCC
Confidence                                                        146789999999999999899999999999999999


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcccccCCc
Q 040113          781 NNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ  813 (887)
Q Consensus       781 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~  813 (887)
                      |++++..|..|+++++|+.|++++|++++..|.
T Consensus       504 n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~  536 (570)
T 2z63_A          504 NQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR  536 (570)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred             CcCCCCCHHHhhcccCCcEEEecCCcccCCCcc
Confidence            999999899999999999999999999998774

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=2.8e-45  Score=428.08  Aligned_cols=503  Identities=19%  Similarity=0.210  Sum_probs=316.9

Q ss_pred             CccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCcc
Q 040113           88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQ  167 (887)
Q Consensus        88 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~  167 (887)
                      .|.|.|+ |+..          ++.++ .++.  .+.  ++|++|+|++|++++. .|..|+++++|++|++++|.+.+.
T Consensus         3 ~C~~~~~-c~~~----------~~~l~-~ip~--~~~--~~L~~L~Ls~n~l~~~-~~~~~~~l~~L~~L~Ls~n~i~~~   65 (549)
T 2z81_A            3 SCDASGV-CDGR----------SRSFT-SIPS--GLT--AAMKSLDLSFNKITYI-GHGDLRACANLQVLILKSSRINTI   65 (549)
T ss_dssp             EECTTSE-EECT----------TSCCS-SCCS--CCC--TTCCEEECCSSCCCEE-CSSTTSSCTTCCEEECTTSCCCEE
T ss_pred             cCCCCce-EECC----------CCccc-cccc--cCC--CCccEEECcCCccCcc-ChhhhhcCCcccEEECCCCCcCcc
Confidence            4899998 8643          33443 3333  332  6899999999998875 577889999999999999999888


Q ss_pred             CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCC-CchhhhcCCCCCCEEEcccCCCCCcc
Q 040113          168 IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRS-TIPHNLANLSSLTFLSLHSCGLQGRI  246 (887)
Q Consensus       168 ~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~  246 (887)
                      .|..++++++|++|++++|.+..+.      +..++.+++|++|++++|.+.+ ..|..++++++|++|++++|.+.+.+
T Consensus        66 ~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~  139 (549)
T 2z81_A           66 EGDAFYSLGSLEHLDLSDNHLSSLS------SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEI  139 (549)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCCSCC------HHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEE
T ss_pred             ChhhccccccCCEEECCCCccCccC------HHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCcccccc
Confidence            8888889999999999988854432      5567888888888888888776 34567778888888888888744344


Q ss_pred             c-cccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCC-chhhc
Q 040113          247 Q-SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFP-WSIVI  324 (887)
Q Consensus       247 ~-~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~-~~~~~  324 (887)
                      + ..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|++++... .....
T Consensus       140 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~  219 (549)
T 2z81_A          140 RRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVD  219 (549)
T ss_dssp             CTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSC
T ss_pred             CHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccchhhHhhcccccEEEccCCccccccccccchh
Confidence            3 567778888888888888877777777778888888888777763322333567777777777777765310 00012


Q ss_pred             cCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCC
Q 040113          325 GNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNL  404 (887)
Q Consensus       325 ~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L  404 (887)
                      ..+++|+.|++++|.+++..+..+                    +..+..+++|+.+++++|.+.+.....    .   .
T Consensus       220 ~~~~~L~~L~l~~n~l~~~~~~~l--------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~----~---~  272 (549)
T 2z81_A          220 EVSSPMKKLAFRGSVLTDESFNEL--------------------LKLLRYILELSEVEFDDCTLNGLGDFN----P---S  272 (549)
T ss_dssp             CCCCCCCEEEEESCEEEHHHHHHH--------------------HGGGGGCTTCCEEEEESCEEECCSCCC----C---C
T ss_pred             hhhhcccceeccccccchhHHHHH--------------------HHHhhhhcccccccccccccccccccc----c---c
Confidence            335556666666665544332211                    122334455555555555443321100    0   0


Q ss_pred             CEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEcc
Q 040113          405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS  484 (887)
Q Consensus       405 ~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls  484 (887)
                                                           ....+..+++|+.+++.++.+...    ...   .        
T Consensus       273 -------------------------------------~~~~~~~l~~L~~L~l~~~~i~~~----~~~---~--------  300 (549)
T 2z81_A          273 -------------------------------------ESDVVSELGKVETVTIRRLHIPQF----YLF---Y--------  300 (549)
T ss_dssp             -------------------------------------TTTCCCCCTTCCEEEEESCBCSCG----GGS---C--------
T ss_pred             -------------------------------------chhhhhhhcccccccccccccchh----hhc---c--------
Confidence                                                 000012223344444444332210    000   0        


Q ss_pred             CCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCC
Q 040113          485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL  564 (887)
Q Consensus       485 ~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~  564 (887)
                                                                            .++..+....+|+.|++++|.+. .+
T Consensus       301 ------------------------------------------------------~l~~~~~~~~~L~~L~l~~n~l~-~i  325 (549)
T 2z81_A          301 ------------------------------------------------------DLSTVYSLLEKVKRITVENSKVF-LV  325 (549)
T ss_dssp             ------------------------------------------------------CCCHHHHHSTTCCEEEEESSCCC-CC
T ss_pred             ------------------------------------------------------cchhhhhhcccceEEEeccCccc-cC
Confidence                                                                  00011122334444444444443 33


Q ss_pred             CCcc-cccCCcceEEecCCCcccccCC---ccccCCCcccEEEccCCeeeeeCC--ccccCCCCCcEEeCCCCcCCCCCC
Q 040113          565 PRCL-GSFSDKLSILDLRANNFFGTIP---NTFMKESRLGMIDLSHNLFQGRIP--RSLINCSKLEFLDIGDNQIRDIFP  638 (887)
Q Consensus       565 p~~l-~~l~~~L~~L~L~~N~l~~~~~---~~~~~l~~L~~L~Ls~N~l~~~~~--~~l~~l~~L~~L~L~~N~l~~~~~  638 (887)
                      |..+ ..++ +|++|++++|++++..|   ..+..+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|
T Consensus       326 p~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp  403 (549)
T 2z81_A          326 PCSFSQHLK-SLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MP  403 (549)
T ss_dssp             CHHHHHHCT-TCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CC
T ss_pred             CHHHHhcCc-cccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CC
Confidence            3333 2333 45555555555554432   224555666666666666654332  346666777777777777764 35


Q ss_pred             ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccc
Q 040113          639 SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW  718 (887)
Q Consensus       639 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~  718 (887)
                      ..+..+++|++|++++|++.+.. ..    -.++|++|++++|++++.++ .                            
T Consensus       404 ~~~~~~~~L~~L~Ls~N~l~~l~-~~----~~~~L~~L~Ls~N~l~~~~~-~----------------------------  449 (549)
T 2z81_A          404 DSCQWPEKMRFLNLSSTGIRVVK-TC----IPQTLEVLDVSNNNLDSFSL-F----------------------------  449 (549)
T ss_dssp             SCCCCCTTCCEEECTTSCCSCCC-TT----SCTTCSEEECCSSCCSCCCC-C----------------------------
T ss_pred             hhhcccccccEEECCCCCccccc-ch----hcCCceEEECCCCChhhhcc-c----------------------------
Confidence            66666777777777777766432 11    13578888888888774221 0                            


Q ss_pred             cccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCC
Q 040113          719 LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE  798 (887)
Q Consensus       719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~  798 (887)
                                                 .+.|++|+|++|+++ .+|. .+.+++|++|+|++|++++.+|..|+.+++|+
T Consensus       450 ---------------------------l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  500 (549)
T 2z81_A          450 ---------------------------LPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQ  500 (549)
T ss_dssp             ---------------------------CTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCC
T ss_pred             ---------------------------CChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccC
Confidence                                       456888899999888 6665 56789999999999999999998899999999


Q ss_pred             EEeCCCCcccccCC
Q 040113          799 SLDLSNNNFLGQIP  812 (887)
Q Consensus       799 ~L~Ls~N~l~~~~p  812 (887)
                      .|++++|++++..|
T Consensus       501 ~L~l~~N~~~~~~~  514 (549)
T 2z81_A          501 KIWLHTNPWDCSCP  514 (549)
T ss_dssp             EEECCSSCBCCCHH
T ss_pred             EEEecCCCccCCCc
Confidence            99999999998877

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.2e-45  Score=424.65  Aligned_cols=476  Identities=21%  Similarity=0.208  Sum_probs=318.4

Q ss_pred             CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEc
Q 040113          230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL  309 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  309 (887)
                      ++|++|++++|.+++..|..+.++++|++|++++|.+.+..|..|+++++|++|++++|.+++..+..++++++|++|++
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  105 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNL  105 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEEC
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEEC
Confidence            45666666666665555555666666666666666665555555666666666666666666555555666666666666


Q ss_pred             cCCcCCC-CCCchhhccCCCCccEEEccCCCCCCccc-cccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC
Q 040113          310 SFNKLSG-EFPWSIVIGNFTQLQSLDFTSNKFSGELH-ASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS  387 (887)
Q Consensus       310 ~~n~l~~-~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  387 (887)
                      ++|.+++ ..|..  ++++++|++|++++|.+.+.++ ..+..+++|++|++++|.+++..|..+..+++|++|+++.|.
T Consensus       106 s~n~l~~~~~~~~--~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~  183 (549)
T 2z81_A          106 MGNPYQTLGVTSL--FPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE  183 (549)
T ss_dssp             TTCCCSSSCSSCS--CTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSB
T ss_pred             CCCcccccchhhh--hhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCc
Confidence            6666653 22333  5566666666666666433443 456666666666666666666666666666666666666666


Q ss_pred             CccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCC
Q 040113          388 YRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIP  467 (887)
Q Consensus       388 l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p  467 (887)
                      +......  .+..+++|++|++++|.+......+.                     .....+++|+.|++++|.+++..+
T Consensus       184 ~~~~~~~--~~~~l~~L~~L~L~~n~l~~~~~~~~---------------------~~~~~~~~L~~L~l~~n~l~~~~~  240 (549)
T 2z81_A          184 SAFLLEI--FADILSSVRYLELRDTNLARFQFSPL---------------------PVDEVSSPMKKLAFRGSVLTDESF  240 (549)
T ss_dssp             STTHHHH--HHHSTTTBSEEEEESCBCTTCCCCCC---------------------SSCCCCCCCCEEEEESCEEEHHHH
T ss_pred             ccccchh--hHhhcccccEEEccCCcccccccccc---------------------chhhhhhcccceeccccccchhHH
Confidence            5432221  24456666667666665443321000                     011223445555555555544322


Q ss_pred             ccccc--cCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh
Q 040113          468 SWLLD--PSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC  545 (887)
Q Consensus       468 ~~~~~--~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~  545 (887)
                      ..+..  ..+++|+.+++++|.+.+......                                          .....+.
T Consensus       241 ~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~------------------------------------------~~~~~~~  278 (549)
T 2z81_A          241 NELLKLLRYILELSEVEFDDCTLNGLGDFNP------------------------------------------SESDVVS  278 (549)
T ss_dssp             HHHHGGGGGCTTCCEEEEESCEEECCSCCCC------------------------------------------CTTTCCC
T ss_pred             HHHHHHhhhhccccccccccccccccccccc------------------------------------------cchhhhh
Confidence            22110  114566666666666554322100                                          0001133


Q ss_pred             CcCCCCeEEcCCCccCCC-----CCCcccccCCcceEEecCCCcccccCCccc-cCCCcccEEEccCCeeeeeCC---cc
Q 040113          546 KLDSLEILVLSHNNLSGL-----LPRCLGSFSDKLSILDLRANNFFGTIPNTF-MKESRLGMIDLSHNLFQGRIP---RS  616 (887)
Q Consensus       546 ~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~---~~  616 (887)
                      .+.+|+.|++.++.+...     ++..+.... +|+.|++++|++. .+|..+ ..+++|++|++++|++++..|   ..
T Consensus       279 ~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~-~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~  356 (549)
T 2z81_A          279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLE-KVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSAC  356 (549)
T ss_dssp             CCTTCCEEEEESCBCSCGGGSCCCCHHHHHST-TCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTC
T ss_pred             hhcccccccccccccchhhhcccchhhhhhcc-cceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhh
Confidence            456677777777655421     111122233 7999999999987 456554 679999999999999998764   34


Q ss_pred             ccCCCCCcEEeCCCCcCCCCCC--ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113          617 LINCSKLEFLDIGDNQIRDIFP--SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC  694 (887)
Q Consensus       617 l~~l~~L~~L~L~~N~l~~~~~--~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  694 (887)
                      +..+++|++|++++|++++..+  ..+..+++|++|++++|++++ +|..+  ..+++|++|++++|+++ .+|..    
T Consensus       357 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~--~~~~~L~~L~Ls~N~l~-~l~~~----  428 (549)
T 2z81_A          357 KGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSC--QWPEKMRFLNLSSTGIR-VVKTC----  428 (549)
T ss_dssp             TTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCC--CCCTTCCEEECTTSCCS-CCCTT----
T ss_pred             hhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhh--cccccccEEECCCCCcc-cccch----
Confidence            7889999999999999998743  568899999999999999985 44443  57899999999999987 34421    


Q ss_pred             cccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCC
Q 040113          695 WNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ  774 (887)
Q Consensus       695 ~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~  774 (887)
                                                                        +++.|+.|+|++|++++.+    +.+++|+
T Consensus       429 --------------------------------------------------~~~~L~~L~Ls~N~l~~~~----~~l~~L~  454 (549)
T 2z81_A          429 --------------------------------------------------IPQTLEVLDVSNNNLDSFS----LFLPRLQ  454 (549)
T ss_dssp             --------------------------------------------------SCTTCSEEECCSSCCSCCC----CCCTTCC
T ss_pred             --------------------------------------------------hcCCceEEECCCCChhhhc----ccCChhc
Confidence                                                              1456899999999999764    5789999


Q ss_pred             EEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113          775 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG  838 (887)
Q Consensus       775 ~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~  838 (887)
                      +|+|++|+++ .+|. .+.+++|++|||++|++++.+|..++.+++|++|++++|+++|..|..
T Consensus       455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~  516 (549)
T 2z81_A          455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  516 (549)
T ss_dssp             EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHHH
T ss_pred             EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCccH
Confidence            9999999999 6776 578999999999999999999999999999999999999999988743

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.1e-43  Score=416.36  Aligned_cols=519  Identities=24%  Similarity=0.249  Sum_probs=297.6

Q ss_pred             CCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113          128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN  207 (887)
Q Consensus       128 ~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~  207 (887)
                      .+++|||++|+|+.. .|..|.++++|++|+|++|.+.+..|..|.++++|++|+|++|+                    
T Consensus        53 ~~~~LdLs~N~i~~l-~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~--------------------  111 (635)
T 4g8a_A           53 STKNLDLSFNPLRHL-GSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP--------------------  111 (635)
T ss_dssp             TCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCC--------------------
T ss_pred             CCCEEEeeCCCCCCC-CHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCc--------------------
Confidence            567777777776653 33456667777777777776655445555555555555555554                    


Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCEEEcc
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~L~L~  286 (887)
                                +++..+..|.++++|++|++++|++++..+..|+++++|++|++++|.+.+ ..|..++.+++|++|+++
T Consensus       112 ----------l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~  181 (635)
T 4g8a_A          112 ----------IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLS  181 (635)
T ss_dssp             ----------CCEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECC
T ss_pred             ----------CCCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhccc
Confidence                      444444556666666666666666665555556666666777776666654 345666666777777777


Q ss_pred             CCCCCCccchhhhCCCC----CCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCc-cccccCCCCCccEEEccC
Q 040113          287 INNLSGELPTSIQNLVS----LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE-LHASIGNLRSLEVLAIGR  361 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~----L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~l~~l~~L~~L~L~~  361 (887)
                      +|.+++..+..+..+.+    +..++++.|.+....+.   ......++.+++.+|..... .+..+..+..++...+..
T Consensus       182 ~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~---~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~  258 (635)
T 4g8a_A          182 SNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPG---AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVL  258 (635)
T ss_dssp             SSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTT---TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEE
T ss_pred             CccccccccccccchhhhhhhhhhhhcccCcccccCcc---cccchhhhhhhhhcccccccccchhhcCCcccccccccc
Confidence            77766655555554433    23566666666532222   22233455666666544322 223344455555444432


Q ss_pred             CcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcc
Q 040113          362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE  441 (887)
Q Consensus       362 n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~  441 (887)
                      +......        .++.          ....  .+.....+...++..+.....                     ...
T Consensus       259 ~~~~~~~--------~l~~----------~~~~--~~~~~~~l~~~~l~~~~~~~~---------------------~~~  297 (635)
T 4g8a_A          259 GEFRNEG--------NLEK----------FDKS--ALEGLCNLTIEEFRLAYLDYY---------------------LDG  297 (635)
T ss_dssp             ECCTTSC--------CCSC----------CCTT--TTGGGGGSEEEEEEEECCCSC---------------------EEE
T ss_pred             ccccccc--------cccc----------cccc--ccccccchhhhhhhhhhhccc---------------------ccc
Confidence            2211100        0000          0000  011112222222221110000                     001


Q ss_pred             cChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCC
Q 040113          442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPV  521 (887)
Q Consensus       442 ~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  521 (887)
                      ++..+.....++.+++.++.+....+..  .  ...++.|++.+|.+..+...                           
T Consensus       298 ~~~~~~~~~~l~~l~~~~~~~~~~~~~~--~--~~~L~~L~l~~~~~~~~~~~---------------------------  346 (635)
T 4g8a_A          298 IIDLFNCLTNVSSFSLVSVTIERVKDFS--Y--NFGWQHLELVNCKFGQFPTL---------------------------  346 (635)
T ss_dssp             CTTTTGGGTTCSEEEEESCEEEECGGGG--S--CCCCSEEEEESCEESSCCCC---------------------------
T ss_pred             hhhhhhhhcccccccccccccccccccc--c--chhhhhhhcccccccCcCcc---------------------------
Confidence            2222334445555555555444322111  1  33444444444444332211                           


Q ss_pred             CCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc--ccCCccccCCCcc
Q 040113          522 PPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF--GTIPNTFMKESRL  599 (887)
Q Consensus       522 ~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~--~~~~~~~~~l~~L  599 (887)
                                              .+..|+.+++.+|.+....  ....++ +|+.+++++|.+.  +..+..+..+.+|
T Consensus       347 ------------------------~l~~L~~l~l~~n~~~~~~--~~~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~L  399 (635)
T 4g8a_A          347 ------------------------KLKSLKRLTFTSNKGGNAF--SEVDLP-SLEFLDLSRNGLSFKGCCSQSDFGTISL  399 (635)
T ss_dssp             ------------------------BCTTCCEEEEESCCSCCBC--CCCBCT-TCCEEECCSSCCBEEEECCHHHHSCSCC
T ss_pred             ------------------------cchhhhhcccccccCCCCc--cccccc-ccccchhhccccccccccccchhhhhhh
Confidence                                    1234445555555443221  122333 4666666666553  2334445556667


Q ss_pred             cEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEc
Q 040113          600 GMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL  678 (887)
Q Consensus       600 ~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~L  678 (887)
                      ++++++.|.+... +..+..+++|+.+++..|......+ ..+..+++++.++++.|.+.+..+..+  ..+++|+.|++
T Consensus       400 ~~L~~~~~~~~~~-~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~--~~~~~L~~L~L  476 (635)
T 4g8a_A          400 KYLDLSFNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKM  476 (635)
T ss_dssp             CEEECCSCSEEEE-CSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTT--TTCTTCCEEEC
T ss_pred             hhhhccccccccc-cccccccccccchhhhhcccccccccccccccccccccccccccccccccccc--ccchhhhhhhh
Confidence            7777777666643 3456666777777777666554433 345667777777777777776665544  56677777787


Q ss_pred             CCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc
Q 040113          679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR  758 (887)
Q Consensus       679 s~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~  758 (887)
                      ++|.+...++...|.                                                   ..+.|+.|||++|+
T Consensus       477 s~N~~~~~~~~~~~~---------------------------------------------------~l~~L~~L~Ls~N~  505 (635)
T 4g8a_A          477 AGNSFQENFLPDIFT---------------------------------------------------ELRNLTFLDLSQCQ  505 (635)
T ss_dssp             TTCEEGGGEECSCCT---------------------------------------------------TCTTCCEEECTTSC
T ss_pred             hhcccccccCchhhh---------------------------------------------------hccccCEEECCCCc
Confidence            777654332211111                                                   14568889999999


Q ss_pred             CCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeecccCcccc
Q 040113          759 FDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVEL-TFLEFFNVSDNYLTG  833 (887)
Q Consensus       759 l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L-~~L~~L~ls~N~l~g  833 (887)
                      +++.+|..|+++++|++|+|++|++++..|..|+++++|++|||++|++++.+|+.+..+ ++|++|++++|++++
T Consensus       506 L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C  581 (635)
T 4g8a_A          506 LEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC  581 (635)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCC
T ss_pred             cCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcc
Confidence            998889999999999999999999999888889999999999999999999999999888 689999999999886

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.4e-45  Score=430.99  Aligned_cols=463  Identities=21%  Similarity=0.309  Sum_probs=276.8

Q ss_pred             CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCC------C------ccccccCCCCCCcEEeCcCCCCCCcchhh
Q 040113          206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ------G------RIQSSLGNLSKLLHLDLSLNELLGELPVS  273 (887)
Q Consensus       206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~------~------~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~  273 (887)
                      .+++.|+|+++.+.|.+|..++++++|++|++++|.+.      +      .+|...  +..|+ ++++.+.+.+.+|..
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~  157 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED  157 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence            37788888888888888888888888888888888651      1      222222  33445 566666666555544


Q ss_pred             ccCC-CCCCEEEccCCCCCCccchhhhCCCCCCEEEcc--CCcCCCCCCchhhccCCCCccEEEccCCCCCCc-------
Q 040113          274 IGNL-HSLKKLDLSINNLSGELPTSIQNLVSLEELDLS--FNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGE-------  343 (887)
Q Consensus       274 l~~l-~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-------  343 (887)
                      +..+ ..+..+++....+..      .....++.+.+.  .|++++ +|..  ++++++|++|++++|.+++.       
T Consensus       158 ~~~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~--l~~l~~L~~L~Ls~n~l~~~~~~~~~~  228 (636)
T 4eco_A          158 FSDLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKA--VMRLTKLRQFYMGNSPFVAENICEAWE  228 (636)
T ss_dssp             SCHHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGG--GGGCTTCCEEEEESCCCCGGGBSSSCS
T ss_pred             HHHHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHH--HhcccCCCEEECcCCcccccccccccc
Confidence            4311 111111111111110      011122222222  456666 6665  66777777777777777764       


Q ss_pred             ----------cccccC--CCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC-Ccc-ccchhhhhcCC------CC
Q 040113          344 ----------LHASIG--NLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS-YRG-TMELDFLLVSL------KN  403 (887)
Q Consensus       344 ----------~~~~l~--~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~-l~~-~~~~~~~l~~l------~~  403 (887)
                                +|..++  ++++|++|++++|.+.+.+|..++++++|++|++++|+ +++ ..|..  +..+      ++
T Consensus       229 ~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~--~~~L~~~~~l~~  306 (636)
T 4eco_A          229 NENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDD--WQALADAPVGEK  306 (636)
T ss_dssp             CTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHH--HHHHHHSGGGGT
T ss_pred             ccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHH--HHhhhccccCCC
Confidence                      777777  78888888888888877788788888888888888887 766 45543  2222      33


Q ss_pred             CCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccCh--hhhcCCcccEEecccCcccCCCCccccccCCCCCcEE
Q 040113          404 LEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN--FLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSAL  481 (887)
Q Consensus       404 L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~--~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L  481 (887)
                      |++|++++|                         .+..+|.  .++.+++|+.|++++|+++|.+| .+..  +++|++|
T Consensus       307 L~~L~L~~n-------------------------~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~--l~~L~~L  358 (636)
T 4eco_A          307 IQIIYIGYN-------------------------NLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGS--EIKLASL  358 (636)
T ss_dssp             CCEEECCSS-------------------------CCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEE--EEEESEE
T ss_pred             CCEEECCCC-------------------------cCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCC--CCCCCEE
Confidence            444444333                         2223444  55555666666666666555555 3322  3333333


Q ss_pred             EccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCC-CCeEEcCCCcc
Q 040113          482 NLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDS-LEILVLSHNNL  560 (887)
Q Consensus       482 ~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~-L~~L~Ls~n~l  560 (887)
                      ++++|.++                                                 .+|..+..+++ |++|++++|.+
T Consensus       359 ~L~~N~l~-------------------------------------------------~lp~~l~~l~~~L~~L~Ls~N~l  389 (636)
T 4eco_A          359 NLAYNQIT-------------------------------------------------EIPANFCGFTEQVENLSFAHNKL  389 (636)
T ss_dssp             ECCSSEEE-------------------------------------------------ECCTTSEEECTTCCEEECCSSCC
T ss_pred             ECCCCccc-------------------------------------------------cccHhhhhhcccCcEEEccCCcC
Confidence            33333222                                                 22333444555 55555555555


Q ss_pred             CCCCCCcccccC-CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCc
Q 040113          561 SGLLPRCLGSFS-DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS  639 (887)
Q Consensus       561 ~~~~p~~l~~l~-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~  639 (887)
                      + .+|..+.... .+|++|++++|++++..|..+....                 .....+++|++|++++|+++...+.
T Consensus       390 ~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~-----------------~~~~~~~~L~~L~Ls~N~l~~lp~~  451 (636)
T 4eco_A          390 K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD-----------------PTPFKGINVSSINLSNNQISKFPKE  451 (636)
T ss_dssp             S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTC-----------------SSCCCCCCEEEEECCSSCCCSCCTH
T ss_pred             c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccc-----------------cccccCCCCCEEECcCCccCcCCHH
Confidence            5 4454443321 1355555555555554444444000                 0000444555555555555544333


Q ss_pred             cccCCCCCCEEEccCCcccccCCCCccc------cCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccccccc
Q 040113          640 WLGTLPNLTVLILQSNKFYGIIREPRID------CGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVI  713 (887)
Q Consensus       640 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~------~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~  713 (887)
                      .+..+++|++|++++|+++. +|.....      .++++|+.|++++|+++ .+|...+.                    
T Consensus       452 ~~~~l~~L~~L~Ls~N~l~~-i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~--------------------  509 (636)
T 4eco_A          452 LFSTGSPLSSINLMGNMLTE-IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA--------------------  509 (636)
T ss_dssp             HHHTTCCCSEEECCSSCCSB-CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST--------------------
T ss_pred             HHccCCCCCEEECCCCCCCC-cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh--------------------
Confidence            44445556666666665552 2222111      12337888888888887 67754210                    


Q ss_pred             CCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC------CCCcccccC
Q 040113          714 SPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL------DNNNLQGHI  787 (887)
Q Consensus       714 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L------s~N~l~~~~  787 (887)
                                                    ...+.|+.|+|++|++++ +|..++++++|++|+|      ++|++.+.+
T Consensus       510 ------------------------------~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~  558 (636)
T 4eco_A          510 ------------------------------TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREW  558 (636)
T ss_dssp             ------------------------------TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCC
T ss_pred             ------------------------------ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccC
Confidence                                          004568889999999987 8888889999999999      568889999


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113          788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g  833 (887)
                      |..++++++|++|+|++|++ +.+|..+.  ++|++|++++|++..
T Consensus       559 p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          559 PEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTCE
T ss_pred             hHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCcc
Confidence            99999999999999999999 68888766  799999999998874

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=5e-44  Score=414.30  Aligned_cols=229  Identities=22%  Similarity=0.273  Sum_probs=156.3

Q ss_pred             CCCCeEEcCCCccCCCCCCcc-----cccCCcceEEecCCCcccccCC-ccccCC---CcccEEEccCCeeeeeCCcccc
Q 040113          548 DSLEILVLSHNNLSGLLPRCL-----GSFSDKLSILDLRANNFFGTIP-NTFMKE---SRLGMIDLSHNLFQGRIPRSLI  618 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l-----~~l~~~L~~L~L~~N~l~~~~~-~~~~~l---~~L~~L~Ls~N~l~~~~~~~l~  618 (887)
                      ++|++|++++|.++|.+|..+     ..+. +|+.+++++|.+  .+| ..+..+   .+|+.|++++|.+....  .+.
T Consensus       247 ~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~-~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~  321 (520)
T 2z7x_B          247 TTVWYFSISNVKLQGQLDFRDFDYSGTSLK-ALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPS  321 (520)
T ss_dssp             SSCSEEEEEEEEEESCCCCCCCCCCSCCCC-EEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCS
T ss_pred             CcccEEEeecccccCccccchhhcccccCc-eeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chh
Confidence            456666666666666666665     5555 566777776666  333 333332   45777777777765332  125


Q ss_pred             CCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccc
Q 040113          619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAM  698 (887)
Q Consensus       619 ~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l  698 (887)
                      .+++|++|++++|++++..|..++.+++|++|++++|++.+....+.....+++|++|++++|++++.+|...+..    
T Consensus       322 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~----  397 (520)
T 2z7x_B          322 KISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSW----  397 (520)
T ss_dssp             SCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCC----
T ss_pred             hCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhcc----
Confidence            6677777777777777777777777777777777777776531111112567778888888887776566431110    


Q ss_pred             hhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeC
Q 040113          699 KIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL  778 (887)
Q Consensus       699 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~L  778 (887)
                                                                     ++.|+.|++++|.+++.+|..+.  ++|++|+|
T Consensus       398 -----------------------------------------------l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~L  428 (520)
T 2z7x_B          398 -----------------------------------------------TKSLLSLNMSSNILTDTIFRCLP--PRIKVLDL  428 (520)
T ss_dssp             -----------------------------------------------CTTCCEEECCSSCCCGGGGGSCC--TTCCEEEC
T ss_pred             -----------------------------------------------CccCCEEECcCCCCCcchhhhhc--ccCCEEEC
Confidence                                                           35678888888888877776654  68888888


Q ss_pred             CCCcccccCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccccCC
Q 040113          779 DNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPIP  836 (887)
Q Consensus       779 s~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g~iP  836 (887)
                      ++|+++ .+|..+..+++|++|+|++|++++ +|.. +..+++|++|++++|++++..|
T Consensus       429 s~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          429 HSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             CSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCcccCC
Confidence            888888 777777788888888888888885 4544 8888888889999888887554

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=2.6e-43  Score=421.60  Aligned_cols=75  Identities=17%  Similarity=0.189  Sum_probs=58.0

Q ss_pred             ecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113          755 SSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT  832 (887)
Q Consensus       755 s~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~  832 (887)
                      ++|++.+.+|..++++++|+.|+|++|++ +.+|..+.  ++|+.|||++|++....+..+.....+..+.+++|++.
T Consensus       790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~  864 (876)
T 4ecn_A          790 EGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQ  864 (876)
T ss_dssp             TCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTS
T ss_pred             ccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcc
Confidence            35666677788888888888899988888 67887766  58888999988888777777766666777777777654

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=4.4e-43  Score=406.36  Aligned_cols=424  Identities=21%  Similarity=0.235  Sum_probs=249.1

Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC-cchhhccCCCCCCE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG-ELPVSIGNLHSLKK  282 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~-~~p~~l~~l~~L~~  282 (887)
                      .+++|++|++++|++.+..|..|+++++|++|++++|.++ .+|..  .+++|++|++++|.+++ .+|..++++++|++
T Consensus        43 ~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~  119 (520)
T 2z7x_B           43 SLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKF  119 (520)
T ss_dssp             TCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCE
T ss_pred             ccccccEEecCCCccCCcChHHhhcccCCCEEecCCCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceE
Confidence            3333333333333444444445555555555555555554 23333  45555555555555544 24455555555555


Q ss_pred             EEccCCCCCCccchhhhCCCCC--CEEEccCCcC--CCCCCchhhccCCC-CccEEEccCCCCCCcccc-ccCCCCCccE
Q 040113          283 LDLSINNLSGELPTSIQNLVSL--EELDLSFNKL--SGEFPWSIVIGNFT-QLQSLDFTSNKFSGELHA-SIGNLRSLEV  356 (887)
Q Consensus       283 L~L~~n~l~~~~~~~l~~l~~L--~~L~L~~n~l--~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~-~l~~l~~L~~  356 (887)
                      |++++|.+++   ..+..+++|  ++|++++|.+  .+..|..  +..+. ....+++++|.+.+.++. .+..+++|+.
T Consensus       120 L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~--l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~  194 (520)
T 2z7x_B          120 LGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEKEDPEG--LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLEL  194 (520)
T ss_dssp             EEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSSCCTTT--TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEE
T ss_pred             EEecCcccch---hhccccccceeeEEEeeccccccccccccc--ccccccceEEEEeccCcchhhhhhhhhhcccceee
Confidence            5555555543   223344444  5555555555  3333332  22222 122334444444333222 2334444444


Q ss_pred             EEccCCc-------CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCe
Q 040113          357 LAIGRCN-------FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKF  429 (887)
Q Consensus       357 L~L~~n~-------i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L  429 (887)
                      |++++|.       +.+.++ .+..+++|++|++++|.+.+.....                                  
T Consensus       195 L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~l~~~~~~~----------------------------------  239 (520)
T 2z7x_B          195 SNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIETTWNSFIR----------------------------------  239 (520)
T ss_dssp             CCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEEEEHHHHHH----------------------------------
T ss_pred             ccccccccccccceeecchh-hhccccchhhccccccccCHHHHHH----------------------------------
Confidence            4444443       222222 3333444444444444333221110                                  


Q ss_pred             eEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccc-----cccCCCCCcEEEccCCcccCccccccccCCcccc
Q 040113          430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWL-----LDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRF  504 (887)
Q Consensus       430 ~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~-----~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~  504 (887)
                                  ++..+ ..++|++|++++|++++.+|..+     ..  +++|+.+++++|.+ .++...+........
T Consensus       240 ------------~~~~~-~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~--l~~L~~l~l~~n~~-~~p~~~~~~~~~~~~  303 (520)
T 2z7x_B          240 ------------ILQLV-WHTTVWYFSISNVKLQGQLDFRDFDYSGTS--LKALSIHQVVSDVF-GFPQSYIYEIFSNMN  303 (520)
T ss_dssp             ------------HHHHH-HTSSCSEEEEEEEEEESCCCCCCCCCCSCC--CCEEEEEEEEECCC-CSCTHHHHHHHHTCC
T ss_pred             ------------HHHHh-hhCcccEEEeecccccCccccchhhccccc--CceeEeccccccce-ecchhhhhcccccCc
Confidence                        01111 12344555555555554444444     22  44555555555544 222111000000122


Q ss_pred             ccEEeCCCcccccCC-CCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCC--CCCCcccccCCcceEEecC
Q 040113          505 LLTLDLSSNNLQGPL-PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLR  581 (887)
Q Consensus       505 L~~L~ls~n~l~~~~-~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~L~  581 (887)
                      ++.|++++|.+.... +...++++++++++|++.+.+|..++.+++|++|++++|++++  .+|..+..++ +|++|+++
T Consensus       304 L~~L~l~~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~-~L~~L~Ls  382 (520)
T 2z7x_B          304 IKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK-SLQQLDIS  382 (520)
T ss_dssp             CSEEEEESSCCCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT-TCCEEECC
T ss_pred             eeEEEcCCCccccccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC-CCCEEECC
Confidence            556666666555433 2445677888888888888888889999999999999999986  5667788888 79999999


Q ss_pred             CCcccccCCc-cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113          582 ANNFFGTIPN-TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI  660 (887)
Q Consensus       582 ~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  660 (887)
                      +|++++.+|. .+..+++|++|++++|++++..|..+.  ++|++|++++|+++ .+|..+..+++|++|++++|+++..
T Consensus       383 ~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l  459 (520)
T 2z7x_B          383 QNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSV  459 (520)
T ss_dssp             SSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC
T ss_pred             CCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCcc
Confidence            9999985554 588899999999999999988877665  79999999999999 5577777999999999999999965


Q ss_pred             CCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113          661 IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF  692 (887)
Q Consensus       661 ~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  692 (887)
                      .+.  .+..+++|++|++++|++++.++..++
T Consensus       460 ~~~--~~~~l~~L~~L~l~~N~~~c~c~~~~~  489 (520)
T 2z7x_B          460 PDG--IFDRLTSLQKIWLHTNPWDCSCPRIDY  489 (520)
T ss_dssp             CTT--TTTTCTTCCEEECCSSCBCCCHHHHHH
T ss_pred             CHH--HhccCCcccEEECcCCCCcccCCchHH
Confidence            433  236789999999999999998876555

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=3.1e-41  Score=401.60  Aligned_cols=555  Identities=22%  Similarity=0.211  Sum_probs=352.9

Q ss_pred             CCCCCCC-CCCCCCCCCCC-CCCCCccc----cceEecCC---------CCcEEEEEcCCCcccccccCCcccccCCCCC
Q 040113           66 YPWSSGC-RPKAASWKPEE-GNIDCCSW----DGVECSEN---------TGHVMKLDLSNSCLYGSINSSSSLFKLVHLE  130 (887)
Q Consensus        66 ~~~~~~~-~~~~~~w~~~~-~~~~~c~w----~gv~c~~~---------~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~  130 (887)
                      .||+.+. ...+++|...- ...+.|.|    ..|.|...         +..+++|||++|.+++..+.  +|.++++|+
T Consensus         2 ~~~~~~~~~~~~~~~~~~~p~~~~~c~~~~~~~~~~c~~~~l~~vP~~lp~~~~~LdLs~N~i~~l~~~--~f~~l~~L~   79 (635)
T 4g8a_A            2 SPWDYKDDDDKLAAANSSIPESWEPCVEVVPNITYQCMELNFYKIPDNLPFSTKNLDLSFNPLRHLGSY--SFFSFPELQ   79 (635)
T ss_dssp             -----------------------CCSEEEETTTEEECTTSCCSSCCSSSCTTCCEEECTTSCCCEECTT--TTTTCTTCC
T ss_pred             CccccCCCcchhhcccCCCCCCCCCccccCCCCEEECCCCCcCccCCCCCcCCCEEEeeCCCCCCCCHH--HHhCCCCCC
Confidence            3566533 23456665321 11233544    24678532         24789999999999876555  899999999


Q ss_pred             eEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCE
Q 040113          131 WLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLET  210 (887)
Q Consensus       131 ~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~  210 (887)
                      +|+|++|+|++. .|..|+++++|++|+|++|++.+..+..|.++++|++|++++|++..+.      +..++++++|++
T Consensus        80 ~L~Ls~N~i~~i-~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~l~~l~------~~~~~~L~~L~~  152 (635)
T 4g8a_A           80 VLDLSRCEIQTI-EDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE------NFPIGHLKTLKE  152 (635)
T ss_dssp             EEECTTCCCCEE-CTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSCCCCST------TCCCTTCTTCCE
T ss_pred             EEECCCCcCCCc-ChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCcCCCCC------hhhhhcCcccCe
Confidence            999999999875 4567999999999999999997766677899999999999999865543      335778888888


Q ss_pred             EEccCCCCCCC-chhhhcCCCCCCEEEcccCCCCCccccccCCCCCC----cEEeCcCCCCCCcchhhccCCCCCCEEEc
Q 040113          211 LDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL----LHLDLSLNELLGELPVSIGNLHSLKKLDL  285 (887)
Q Consensus       211 L~L~~n~~~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L----~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  285 (887)
                      |++++|.+.+. .|..++.+++|++|++++|++++..+..+..++++    ..++++.|.+....+ .......++.+++
T Consensus       153 L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~-~~~~~~~~~~l~l  231 (635)
T 4g8a_A          153 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQP-GAFKEIRLHKLTL  231 (635)
T ss_dssp             EECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECT-TTTTTCEEEEEEE
T ss_pred             eccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCc-ccccchhhhhhhh
Confidence            88888888653 56777888888888888888887777776554433    367778887764333 3334455667777


Q ss_pred             cCCCCCCc-cchhhhCCCCCCEEEccCCcCCC------CCCchhhccCCCCccEEEccCCCCCC---ccccccCCCCCcc
Q 040113          286 SINNLSGE-LPTSIQNLVSLEELDLSFNKLSG------EFPWSIVIGNFTQLQSLDFTSNKFSG---ELHASIGNLRSLE  355 (887)
Q Consensus       286 ~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~------~~~~~~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~l~~L~  355 (887)
                      .+|..... .+..+..+..++...+..+....      .....  +.....+....+..+....   ..+..+..+.+++
T Consensus       232 ~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~--~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~  309 (635)
T 4g8a_A          232 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA--LEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLTNVS  309 (635)
T ss_dssp             ESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT--TGGGGGSEEEEEEEECCCSCEEECTTTTGGGTTCS
T ss_pred             hcccccccccchhhcCCcccccccccccccccccccccccccc--cccccchhhhhhhhhhhcccccchhhhhhhhcccc
Confidence            77765432 33455666666666554322211      11111  2233334444433332211   1122233334444


Q ss_pred             EEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeC
Q 040113          356 VLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLR  435 (887)
Q Consensus       356 ~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~  435 (887)
                      .+.+.++.+...  ..+.....++.|++.+|.+.+...     ..++.|+.+++..|                       
T Consensus       310 ~l~~~~~~~~~~--~~~~~~~~L~~L~l~~~~~~~~~~-----~~l~~L~~l~l~~n-----------------------  359 (635)
T 4g8a_A          310 SFSLVSVTIERV--KDFSYNFGWQHLELVNCKFGQFPT-----LKLKSLKRLTFTSN-----------------------  359 (635)
T ss_dssp             EEEEESCEEEEC--GGGGSCCCCSEEEEESCEESSCCC-----CBCTTCCEEEEESC-----------------------
T ss_pred             cccccccccccc--cccccchhhhhhhcccccccCcCc-----ccchhhhhcccccc-----------------------
Confidence            555444443322  122333444555554444432221     12333444444443                       


Q ss_pred             CCCCcccChhhhcCCcccEEecccCcccC--CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCc
Q 040113          436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHG--KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSN  513 (887)
Q Consensus       436 ~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~--~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n  513 (887)
                        .....+. ...+++|+.+++++|.+..  ..+.....  +.+|+.+++..+.........    .             
T Consensus       360 --~~~~~~~-~~~l~~L~~L~ls~n~l~~~~~~~~~~~~--~~~L~~L~~~~~~~~~~~~~~----~-------------  417 (635)
T 4g8a_A          360 --KGGNAFS-EVDLPSLEFLDLSRNGLSFKGCCSQSDFG--TISLKYLDLSFNGVITMSSNF----L-------------  417 (635)
T ss_dssp             --CSCCBCC-CCBCTTCCEEECCSSCCBEEEECCHHHHS--CSCCCEEECCSCSEEEECSCC----T-------------
T ss_pred             --cCCCCcc-cccccccccchhhccccccccccccchhh--hhhhhhhhccccccccccccc----c-------------
Confidence              2221111 1234445555555554432  12222222  444455554444433322211    1             


Q ss_pred             ccccCCCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc-cccCCc
Q 040113          514 NLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF-FGTIPN  591 (887)
Q Consensus       514 ~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l-~~~~~~  591 (887)
                              ...+++.+++..++.....+ ..+..+++++.++++.|.+.+..+..+..++ .|+.|++++|++ .+..|.
T Consensus       418 --------~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~-~L~~L~Ls~N~~~~~~~~~  488 (635)
T 4g8a_A          418 --------GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS-SLEVLKMAGNSFQENFLPD  488 (635)
T ss_dssp             --------TCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCT-TCCEEECTTCEEGGGEECS
T ss_pred             --------ccccccchhhhhccccccccccccccccccccccccccccccccccccccch-hhhhhhhhhcccccccCch
Confidence                    12334444444444333332 4567889999999999999988888888887 799999999985 456788


Q ss_pred             cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCC-
Q 040113          592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF-  670 (887)
Q Consensus       592 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-  670 (887)
                      .|..+++|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..+..+  ..+ 
T Consensus       489 ~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l--~~l~  566 (635)
T 4g8a_A          489 IFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQEL--QHFP  566 (635)
T ss_dssp             CCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCT--TCCC
T ss_pred             hhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHH--Hhhh
Confidence            89999999999999999999999999999999999999999999999999999999999999999999988766  555 


Q ss_pred             CCCCEEEcCCCcCcccCChhhhhcc
Q 040113          671 SKLRIIDLSNNRFTGKLPSKSFLCW  695 (887)
Q Consensus       671 ~~L~~L~Ls~N~l~~~ip~~~~~~~  695 (887)
                      ++|+.|++++|++.+.+...+|..|
T Consensus       567 ~~L~~L~L~~Np~~C~C~~~~~~~w  591 (635)
T 4g8a_A          567 SSLAFLNLTQNDFACTCEHQSFLQW  591 (635)
T ss_dssp             TTCCEEECTTCCBCCSGGGHHHHHH
T ss_pred             CcCCEEEeeCCCCcccCCcHHHHHH
Confidence            6899999999999998876666554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=1.3e-41  Score=397.40  Aligned_cols=184  Identities=24%  Similarity=0.343  Sum_probs=127.9

Q ss_pred             CcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEE
Q 040113          597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII  676 (887)
Q Consensus       597 ~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  676 (887)
                      .+|+.|++++|.+....  ....+++|++|++++|++++..|..+..+++|++|++++|++++..+.+..+..+++|+.|
T Consensus       331 ~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L  408 (562)
T 3a79_B          331 MNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETL  408 (562)
T ss_dssp             CCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEE
T ss_pred             CcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEE
Confidence            35666666666654321  1245667777777777777766677777777777777777776532211122566777777


Q ss_pred             EcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec
Q 040113          677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS  756 (887)
Q Consensus       677 ~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~  756 (887)
                      ++++|++++.+|...+..                                                   ++.|+.|++++
T Consensus       409 ~l~~N~l~~~~~~~~~~~---------------------------------------------------l~~L~~L~l~~  437 (562)
T 3a79_B          409 DVSLNSLNSHAYDRTCAW---------------------------------------------------AESILVLNLSS  437 (562)
T ss_dssp             ECTTSCCBSCCSSCCCCC---------------------------------------------------CTTCCEEECCS
T ss_pred             ECCCCcCCCccChhhhcC---------------------------------------------------cccCCEEECCC
Confidence            777777776566432111                                                   35677888888


Q ss_pred             CcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccccC
Q 040113          757 NRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTGPI  835 (887)
Q Consensus       757 N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g~i  835 (887)
                      |++++.+|..+.  ++|++|+|++|+++ .+|..+.++++|++|+|++|++++ +|.. +..+++|++|++++|++++..
T Consensus       438 n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~c  513 (562)
T 3a79_B          438 NMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCTC  513 (562)
T ss_dssp             SCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCCH
T ss_pred             CCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCCc
Confidence            888877776554  68888899988888 677777788899999999999884 5554 888889999999999988866


Q ss_pred             CC
Q 040113          836 PQ  837 (887)
Q Consensus       836 P~  837 (887)
                      |.
T Consensus       514 ~~  515 (562)
T 3a79_B          514 PG  515 (562)
T ss_dssp             HH
T ss_pred             ch
Confidence            53

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.5e-40  Score=386.46  Aligned_cols=450  Identities=20%  Similarity=0.185  Sum_probs=307.9

Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  286 (887)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+++..|..|.++++|++|++++|.++ .+|..  .+++|++|+++
T Consensus        53 ~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~--~l~~L~~L~Ls  129 (562)
T 3a79_B           53 RTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQ-NISCC--PMASLRHLDLS  129 (562)
T ss_dssp             TCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCC-EECSC--CCTTCSEEECC
T ss_pred             CcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCC-ccCcc--ccccCCEEECC
Confidence            4444445555555555566666777777777777776666666777777777777777765 45544  67777777777


Q ss_pred             CCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCc--cEEEccCCCC--CCccccccCCCC-CccEEEcc
Q 040113          287 INNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL--QSLDFTSNKF--SGELHASIGNLR-SLEVLAIG  360 (887)
Q Consensus       287 ~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L--~~L~L~~n~l--~~~~~~~l~~l~-~L~~L~L~  360 (887)
                      +|.+++ ..|..++++++|++|++++|++++..     +..+++|  +.|++++|.+  ++..|..+..+. ..-.++++
T Consensus       130 ~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~-----~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~  204 (562)
T 3a79_B          130 FNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQLD-----LLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFH  204 (562)
T ss_dssp             SSCCSBCCCCGGGGGCTTCCEEEEECSBCCTTT-----TGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEEC
T ss_pred             CCCccccCchHhhcccCcccEEecCCCccccCc-----hhhhhhceeeEEEeecccccccccCcccccccCcceEEEEec
Confidence            777765 23567777777777777777776421     3344444  7777777777  666666665543 12245667


Q ss_pred             CCcCCccCCc-cccCCCCCCEEEcCCCCCcc--ccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCC
Q 040113          361 RCNFSGRIPS-SLRNLTQLITLDLSQNSYRG--TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC  437 (887)
Q Consensus       361 ~n~i~~~~~~-~l~~l~~L~~L~L~~n~l~~--~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~  437 (887)
                      +|.+.+.++. .+..+++|+.+++++|....  .......+..+++|+.++++++.+..                    +
T Consensus       205 ~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~--------------------~  264 (562)
T 3a79_B          205 PNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTW--------------------K  264 (562)
T ss_dssp             SSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECH--------------------H
T ss_pred             CccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcH--------------------H
Confidence            7776665443 35567778888888775211  00111125667777777776653321                    1


Q ss_pred             CCcccChhhhcCCcccEEecccCcccCCCCccccccC---CCCCcEEEccCCcccCccccccccCCccccccEEeCCCcc
Q 040113          438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPS---TQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNN  514 (887)
Q Consensus       438 ~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~---~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~  514 (887)
                      .+..++..+ ..++|++|++++|.+++.+|..++...   ++.|+.++++.+.+ .++............++.|++++|.
T Consensus       265 ~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~-~~p~~~~~~~~~~~~L~~L~l~~n~  342 (562)
T 3a79_B          265 CSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF-LFSKEALYSVFAEMNIKMLSISDTP  342 (562)
T ss_dssp             HHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC-SSCHHHHHHHHHTCCCSEEEEESSC
T ss_pred             HHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee-ecChhhhhhhhccCcceEEEccCCC
Confidence            111222222 234788888888888877777663211   33344444444444 2221111000011348888888888


Q ss_pred             cccCCC-CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCC--CCCcccccCCcceEEecCCCcccccCC-
Q 040113          515 LQGPLP-VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGL--LPRCLGSFSDKLSILDLRANNFFGTIP-  590 (887)
Q Consensus       515 l~~~~~-~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~--~p~~l~~l~~~L~~L~L~~N~l~~~~~-  590 (887)
                      +..... ...++++++++++|++.+.+|..+..+++|++|++++|++++.  +|..+..++ +|++|++++|++++.+| 
T Consensus       343 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~l~~N~l~~~~~~  421 (562)
T 3a79_B          343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMS-SLETLDVSLNSLNSHAYD  421 (562)
T ss_dssp             CCCCCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCT-TCCEEECTTSCCBSCCSS
T ss_pred             cccccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCC-CCCEEECCCCcCCCccCh
Confidence            765443 5577899999999999998999999999999999999999863  356688888 79999999999998455 


Q ss_pred             ccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCC
Q 040113          591 NTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGF  670 (887)
Q Consensus       591 ~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l  670 (887)
                      ..+..+++|++|++++|++++..|..+.  ++|++|++++|+++.+ |..+..+++|++|++++|++++..+.  .+..+
T Consensus       422 ~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~~i-p~~~~~l~~L~~L~L~~N~l~~l~~~--~~~~l  496 (562)
T 3a79_B          422 RTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIMSI-PKDVTHLQALQELNVASNQLKSVPDG--VFDRL  496 (562)
T ss_dssp             CCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCCCC-CTTTTSSCCCSEEECCSSCCCCCCTT--STTTC
T ss_pred             hhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCccc-ChhhcCCCCCCEEECCCCCCCCCCHH--HHhcC
Confidence            4688999999999999999987776654  7999999999999955 66666999999999999999965443  23678


Q ss_pred             CCCCEEEcCCCcCcccCChhhh
Q 040113          671 SKLRIIDLSNNRFTGKLPSKSF  692 (887)
Q Consensus       671 ~~L~~L~Ls~N~l~~~ip~~~~  692 (887)
                      ++|+.|++++|++.+.+|...+
T Consensus       497 ~~L~~L~l~~N~~~c~c~~~~~  518 (562)
T 3a79_B          497 TSLQYIWLHDNPWDCTCPGIRY  518 (562)
T ss_dssp             TTCCCEECCSCCBCCCHHHHHH
T ss_pred             CCCCEEEecCCCcCCCcchHHH
Confidence            9999999999999998886655

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=2.3e-39  Score=347.88  Aligned_cols=293  Identities=32%  Similarity=0.516  Sum_probs=197.7

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcc--ccceEecCCC--CcEEEEEcCCCc
Q 040113           37 LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCS--WDGVECSENT--GHVMKLDLSNSC  112 (887)
Q Consensus        37 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~~--~~v~~L~L~~~~  112 (887)
                      .|.++|++||++||+++.++.                 .+.+|..   +.+||.  |.||+|+..+  ++|++|+|+++.
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~-----------------~l~~W~~---~~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~   61 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPT-----------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN   61 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-----------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred             CCCHHHHHHHHHHHHhcCCcc-----------------cccCCCC---CCCCCcCCCcceEeCCCCCCceEEEEECCCCC
Confidence            589999999999999986432                 4789976   578998  9999998654  799999999999


Q ss_pred             ccc--cccCCcccccCCCCCeEECCC-CCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCC
Q 040113          113 LYG--SINSSSSLFKLVHLEWLNLAF-NDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGY  189 (887)
Q Consensus       113 l~~--~~~~~~~l~~l~~L~~L~L~~-n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~  189 (887)
                      +.|  .++.  .+.++++|++|+|++ |.+.+. +|..|+++++|++|++++|.+.+.+|..+.++++|++|++++|.  
T Consensus        62 l~~~~~~~~--~l~~l~~L~~L~L~~~n~l~~~-~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~--  136 (313)
T 1ogq_A           62 LPKPYPIPS--SLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNA--  136 (313)
T ss_dssp             CSSCEECCG--GGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSE--
T ss_pred             ccCCcccCh--hHhCCCCCCeeeCCCCCccccc-CChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCc--
Confidence            988  6655  788888888888884 777765 78888888888888888888877788777777777777777765  


Q ss_pred             CccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCC-CCcEEeCcCCCCCC
Q 040113          190 GLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLS-KLLHLDLSLNELLG  268 (887)
Q Consensus       190 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~Ls~n~l~~  268 (887)
                                                  +.+.+|..+..+++|++|++++|.+++.+|..+..++ +|++|++++|.+.+
T Consensus       137 ----------------------------l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~  188 (313)
T 1ogq_A          137 ----------------------------LSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG  188 (313)
T ss_dssp             ----------------------------EESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEE
T ss_pred             ----------------------------cCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeec
Confidence                                        3334444444445555555555555444555555554 55555555555555


Q ss_pred             cchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCcccccc
Q 040113          269 ELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASI  348 (887)
Q Consensus       269 ~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l  348 (887)
                      .+|..+..++ |++|++++|.+++..|..+..+++|++|++++|.+++.++.   +..+++|++|++++|++++.+|..+
T Consensus       189 ~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~l~~L~~L~Ls~N~l~~~~p~~l  264 (313)
T 1ogq_A          189 KIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK---VGLSKNLNGLDLRNNRIYGTLPQGL  264 (313)
T ss_dssp             ECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGGG---CCCCTTCCEEECCSSCCEECCCGGG
T ss_pred             cCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCceeeecCc---ccccCCCCEEECcCCcccCcCChHH
Confidence            5555555554 55555555555555555555555556666655555544332   4455666666666666665666666


Q ss_pred             CCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC
Q 040113          349 GNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS  387 (887)
Q Consensus       349 ~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  387 (887)
                      ..+++|++|++++|++++.+|.. ..+++|+.+++++|+
T Consensus       265 ~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~  302 (313)
T 1ogq_A          265 TQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK  302 (313)
T ss_dssp             GGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred             hcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence            66666666666666666666654 556666666666665

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.7e-38  Score=353.77  Aligned_cols=117  Identities=28%  Similarity=0.401  Sum_probs=68.9

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL  623 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  623 (887)
                      ++.+++|++|++++|++++ +|...    .+|++|++++|++++ +|..   .++|++|++++|++++.. . +  .++|
T Consensus       233 ~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~-~-~--~~~L  299 (454)
T 1jl5_A          233 LQNLPFLTTIYADNNLLKT-LPDLP----PSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS-E-L--PPNL  299 (454)
T ss_dssp             CTTCTTCCEEECCSSCCSS-CCSCC----TTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES-C-C--CTTC
T ss_pred             cCCCCCCCEEECCCCcCCc-ccccc----cccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc-C-c--CCcC
Confidence            5667778888888887764 44322    267777777777765 3332   356777777777776531 1 1  1466


Q ss_pred             cEEeCCCCcCCCCCCccccCC-CCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113          624 EFLDIGDNQIRDIFPSWLGTL-PNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       624 ~~L~L~~N~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      ++|++++|++++..     .+ ++|++|++++|++++. |.     .+++|+.|++++|+++
T Consensus       300 ~~L~l~~N~l~~i~-----~~~~~L~~L~Ls~N~l~~l-p~-----~~~~L~~L~L~~N~l~  350 (454)
T 1jl5_A          300 YYLNASSNEIRSLC-----DLPPSLEELNVSNNKLIEL-PA-----LPPRLERLIASFNHLA  350 (454)
T ss_dssp             CEEECCSSCCSEEC-----CCCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCS
T ss_pred             CEEECcCCcCCccc-----CCcCcCCEEECCCCccccc-cc-----cCCcCCEEECCCCccc
Confidence            66667666666531     22 3566666666666542 21     1355666666666554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.1e-37  Score=351.09  Aligned_cols=377  Identities=22%  Similarity=0.214  Sum_probs=236.5

Q ss_pred             CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcc-hhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEE
Q 040113          230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL-PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD  308 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  308 (887)
                      ++|++|++++|.+++..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+++..|..++++++|++|+
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  109 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLT  109 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEe
Confidence            45666666666665555555666666666666666555443 33455556666666666655555555555555555555


Q ss_pred             ccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccc-cCCCCCccEEEccCCcCCccCCccccCC--CCCCEEEcCC
Q 040113          309 LSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHAS-IGNLRSLEVLAIGRCNFSGRIPSSLRNL--TQLITLDLSQ  385 (887)
Q Consensus       309 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~l~~l--~~L~~L~L~~  385 (887)
                      +++|++++..+....++.+++|++|++++|.+++..|.. +..+++|++|++++|.+.+..+..+..+  .+|+.|++++
T Consensus       110 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          110 LTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             CTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            555555543332222444555555555555555444433 4445555555555555544444444333  3344444444


Q ss_pred             CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCC
Q 040113          386 NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGK  465 (887)
Q Consensus       386 n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~  465 (887)
                      |.+.+..+..                          ...                .....+..+++|++|++++|++.+.
T Consensus       190 n~l~~~~~~~--------------------------~~~----------------~~~~~~~~~~~L~~L~Ls~n~l~~~  227 (455)
T 3v47_A          190 ITLQDMNEYW--------------------------LGW----------------EKCGNPFKNTSITTLDLSGNGFKES  227 (455)
T ss_dssp             CBCTTCSTTC--------------------------TTH----------------HHHCCTTTTCEEEEEECTTSCCCHH
T ss_pred             Ccccccchhh--------------------------ccc----------------cccccccccceeeeEecCCCccccc
Confidence            4433222111                          000                0001122345566666666666655


Q ss_pred             CCcccccc-CCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhh
Q 040113          466 IPSWLLDP-STQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWL  544 (887)
Q Consensus       466 ~p~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~  544 (887)
                      .|..+... ...+|+.|++++|...+....                                      .+.+.+..+..+
T Consensus       228 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--------------------------------------~~~~~~~~~~~~  269 (455)
T 3v47_A          228 MAKRFFDAIAGTKIQSLILSNSYNMGSSFG--------------------------------------HTNFKDPDNFTF  269 (455)
T ss_dssp             HHHHHHHHTTTCCEEEEECTTCTTTSCCTT--------------------------------------CCSSCCCCTTTT
T ss_pred             chhhhhccccccceeeEeeccccccccccc--------------------------------------hhhhccCccccc
Confidence            55444320 124555555555543332110                                      011111111112


Q ss_pred             h--CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113          545 C--KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK  622 (887)
Q Consensus       545 ~--~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  622 (887)
                      .  ..++|+.|++++|.+++..|..+..++ +|++|++++|++++..|..|..+++|++|++++|++++..|..|.++++
T Consensus       270 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  348 (455)
T 3v47_A          270 KGLEASGVKTCDLSKSKIFALLKSVFSHFT-DLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDK  348 (455)
T ss_dssp             GGGTTSCCCEEECCSSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTT
T ss_pred             ccccccCceEEEecCccccccchhhcccCC-CCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCccc
Confidence            2  246899999999999988898888888 7999999999999988889999999999999999999888889999999


Q ss_pred             CcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCCh
Q 040113          623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPS  689 (887)
Q Consensus       623 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~  689 (887)
                      |++|+|++|++++..|..|..+++|++|++++|++++..+..+  ..+++|+.|++++|++++.+|.
T Consensus       349 L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~l~~~~~~  413 (455)
T 3v47_A          349 LEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCPR  413 (455)
T ss_dssp             CCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCTTT
T ss_pred             CCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHh--ccCCcccEEEccCCCcccCCCc
Confidence            9999999999999989999999999999999999998765544  6789999999999999999983

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=2e-36  Score=344.36  Aligned_cols=368  Identities=21%  Similarity=0.247  Sum_probs=231.2

Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCcc-ccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEc
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRI-QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDL  285 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L  285 (887)
                      +|++|++++|.+.+..|..++++++|++|++++|.+.+.+ +..|.++++|++|++++|.+.+..|..|+++++|++|++
T Consensus        31 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L  110 (455)
T 3v47_A           31 HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTL  110 (455)
T ss_dssp             TCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEEC
T ss_pred             ccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeC
Confidence            3444444444444444555555555555555555554333 334555555555555555555555555555556666666


Q ss_pred             cCCCCCCccchh--hhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCC--CCccEEEccC
Q 040113          286 SINNLSGELPTS--IQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNL--RSLEVLAIGR  361 (887)
Q Consensus       286 ~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--~~L~~L~L~~  361 (887)
                      ++|.+++..+..  ++.+++|++|++++|++++..|.. .++++++|++|++++|.+++..+..+..+  .+|+.|++++
T Consensus       111 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~  189 (455)
T 3v47_A          111 TQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS-FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS  189 (455)
T ss_dssp             TTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG-GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTT
T ss_pred             CCCCCCccccCcccccCcccCCEEECCCCccCccCccc-ccCCCCcccEEeCCCCcccccChhhhhcccccccccccccc
Confidence            666555544433  555566666666666655443432 14455666666666666655555555444  4566666666


Q ss_pred             CcCCccCCcc--------ccCCCCCCEEEcCCCCCccccchhhh-hcCCCCCCEEEccCCcccccccccCCCCCCCeeEE
Q 040113          362 CNFSGRIPSS--------LRNLTQLITLDLSQNSYRGTMELDFL-LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVV  432 (887)
Q Consensus       362 n~i~~~~~~~--------l~~l~~L~~L~L~~n~l~~~~~~~~~-l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l  432 (887)
                      |.+.+..+..        +..+++|++|++++|.+.+..+..+. ....++|+.|++++|......              
T Consensus       190 n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------  255 (455)
T 3v47_A          190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------  255 (455)
T ss_dssp             CBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------
T ss_pred             CcccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------
Confidence            6665433322        23456677777777776655543311 111234444444444211100              


Q ss_pred             eeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCC
Q 040113          433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS  512 (887)
Q Consensus       433 ~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~  512 (887)
                                              +..+.+.+..+..+.....                                     
T Consensus       256 ------------------------~~~~~~~~~~~~~~~~~~~-------------------------------------  274 (455)
T 3v47_A          256 ------------------------FGHTNFKDPDNFTFKGLEA-------------------------------------  274 (455)
T ss_dssp             ------------------------TTCCSSCCCCTTTTGGGTT-------------------------------------
T ss_pred             ------------------------cchhhhccCcccccccccc-------------------------------------
Confidence                                    0000010000000000001                                     


Q ss_pred             cccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcc
Q 040113          513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNT  592 (887)
Q Consensus       513 n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  592 (887)
                                 ..++.+++++|.+.+..|..+..+++|++|++++|.+++..|..+..++ +|++|++++|++++..+..
T Consensus       275 -----------~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~  342 (455)
T 3v47_A          275 -----------SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLT-HLLKLNLSQNFLGSIDSRM  342 (455)
T ss_dssp             -----------SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECGGG
T ss_pred             -----------cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcc-cCCEEECCCCccCCcChhH
Confidence                       2334444444445555667788899999999999999988898999988 7999999999999998999


Q ss_pred             ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCC
Q 040113          593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIR  662 (887)
Q Consensus       593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~  662 (887)
                      |..+++|++|++++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..+
T Consensus       343 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          343 FENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             GTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             hcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            9999999999999999999999999999999999999999999888888999999999999999988755

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=4.3e-37  Score=346.63  Aligned_cols=378  Identities=23%  Similarity=0.282  Sum_probs=191.8

Q ss_pred             CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCc-------------cEEEccCCcCCcc
Q 040113          301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSL-------------EVLAIGRCNFSGR  367 (887)
Q Consensus       301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-------------~~L~L~~n~i~~~  367 (887)
                      .+.|++|++++|.+ +.+|..  ++++++|++|++++|.+.+.+|..++.+++|             ++|++++|.+++ 
T Consensus        10 ~~~L~~L~l~~n~l-~~iP~~--i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-   85 (454)
T 1jl5_A           10 NTFLQEPLRHSSNL-TEMPVE--AENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-   85 (454)
T ss_dssp             ---------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-
T ss_pred             cccchhhhcccCch-hhCChh--HhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-
Confidence            57888899998888 688877  8888999999999988888888888888776             555555555543 


Q ss_pred             CCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhh
Q 040113          368 IPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLK  447 (887)
Q Consensus       368 ~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~  447 (887)
                      +|..   .++|++|++++|.+++. +.     ..++|++|++++|.+..                         ++..  
T Consensus        86 lp~~---~~~L~~L~l~~n~l~~l-p~-----~~~~L~~L~l~~n~l~~-------------------------l~~~--  129 (454)
T 1jl5_A           86 LPEL---PPHLESLVASCNSLTEL-PE-----LPQSLKSLLVDNNNLKA-------------------------LSDL--  129 (454)
T ss_dssp             CCSC---CTTCSEEECCSSCCSSC-CC-----CCTTCCEEECCSSCCSC-------------------------CCSC--
T ss_pred             CCCC---cCCCCEEEccCCcCCcc-cc-----ccCCCcEEECCCCccCc-------------------------ccCC--
Confidence            2221   24555555555555542 11     12445555555554333                         2221  


Q ss_pred             cCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113          448 NQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV  527 (887)
Q Consensus       448 ~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  527 (887)
                       .++|++|++++|++++ +| .+..  +++|++|++++|++++++..                            ..+++
T Consensus       130 -~~~L~~L~L~~n~l~~-lp-~~~~--l~~L~~L~l~~N~l~~lp~~----------------------------~~~L~  176 (454)
T 1jl5_A          130 -PPLLEYLGVSNNQLEK-LP-ELQN--SSFLKIIDVDNNSLKKLPDL----------------------------PPSLE  176 (454)
T ss_dssp             -CTTCCEEECCSSCCSS-CC-CCTT--CTTCCEEECCSSCCSCCCCC----------------------------CTTCC
T ss_pred             -CCCCCEEECcCCCCCC-Cc-ccCC--CCCCCEEECCCCcCcccCCC----------------------------ccccc
Confidence             1345555555555553 34 2332  45555555555554443221                            12333


Q ss_pred             EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCC
Q 040113          528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHN  607 (887)
Q Consensus       528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N  607 (887)
                      ++++++|++.+ +| .++.+++|++|++++|.+++ +|...    .+|++|++++|+++ .+| .+..+++|++|++++|
T Consensus       177 ~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~~----~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N  247 (454)
T 1jl5_A          177 FIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDLP----LSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNN  247 (454)
T ss_dssp             EEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCCC----TTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSS
T ss_pred             EEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCCc----CcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCC
Confidence            33333333333 33 35667777777777777764 33322    25777777777776 445 3667777777777777


Q ss_pred             eeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccC
Q 040113          608 LFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKL  687 (887)
Q Consensus       608 ~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~i  687 (887)
                      ++++ +|..   .++|++|++++|++++. |..   .++|++|++++|++++...      ..++|+.|++++|++++ +
T Consensus       248 ~l~~-l~~~---~~~L~~L~l~~N~l~~l-~~~---~~~L~~L~ls~N~l~~l~~------~~~~L~~L~l~~N~l~~-i  312 (454)
T 1jl5_A          248 LLKT-LPDL---PPSLEALNVRDNYLTDL-PEL---PQSLTFLDVSENIFSGLSE------LPPNLYYLNASSNEIRS-L  312 (454)
T ss_dssp             CCSS-CCSC---CTTCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCSEESC------CCTTCCEEECCSSCCSE-E
T ss_pred             cCCc-cccc---ccccCEEECCCCccccc-Ccc---cCcCCEEECcCCccCcccC------cCCcCCEEECcCCcCCc-c
Confidence            7764 3332   35677777777777663 332   3667777777777766321      12567777777776653 1


Q ss_pred             ChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhh
Q 040113          688 PSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSI  767 (887)
Q Consensus       688 p~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l  767 (887)
                      +.                                                       .++.|+.|++++|++++ +|.. 
T Consensus       313 ~~-------------------------------------------------------~~~~L~~L~Ls~N~l~~-lp~~-  335 (454)
T 1jl5_A          313 CD-------------------------------------------------------LPPSLEELNVSNNKLIE-LPAL-  335 (454)
T ss_dssp             CC-------------------------------------------------------CCTTCCEEECCSSCCSC-CCCC-
T ss_pred             cC-------------------------------------------------------CcCcCCEEECCCCcccc-cccc-
Confidence            10                                                       13356677777777765 4443 


Q ss_pred             hcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc--cCCccccCC-------------CCCCeeecccCccc
Q 040113          768 ANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG--QIPQQLVEL-------------TFLEFFNVSDNYLT  832 (887)
Q Consensus       768 ~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~--~~p~~l~~L-------------~~L~~L~ls~N~l~  832 (887)
                        +++|++|++++|+++ .+|.   .+++|++|++++|++++  .+|.++..+             ++|++|++++|+++
T Consensus       336 --~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~  409 (454)
T 1jl5_A          336 --PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLR  409 (454)
T ss_dssp             --CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEEECCC-----------------------
T ss_pred             --CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCC
Confidence              466777777777776 3554   35667777777777776  566666666             78999999999999


Q ss_pred             c--cCCCC
Q 040113          833 G--PIPQG  838 (887)
Q Consensus       833 g--~iP~~  838 (887)
                      |  .+|..
T Consensus       410 ~~~~iP~s  417 (454)
T 1jl5_A          410 EFPDIPES  417 (454)
T ss_dssp             --------
T ss_pred             ccccchhh
Confidence            8  78854

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9e-36  Score=336.15  Aligned_cols=363  Identities=21%  Similarity=0.179  Sum_probs=230.6

Q ss_pred             HhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCC
Q 040113          201 LVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSL  280 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L  280 (887)
                      .++++++|++|++++|.+++. | .++.+++|++|++++|.+++. +  ++.+++|++|++++|.+++. +  ++++++|
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L  108 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKL  108 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTC
T ss_pred             ChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcC
Confidence            455566666666666666653 3 466666666666666666653 2  56666666666666666543 2  5666666


Q ss_pred             CEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEcc
Q 040113          281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIG  360 (887)
Q Consensus       281 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~  360 (887)
                      ++|++++|.+++. +  ++.+++|++|++++|++++ ++    ++.+++|++|++++|...+.+  .++.+++|++|+++
T Consensus       109 ~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~-l~----l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls  178 (457)
T 3bz5_A          109 TYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTE-ID----VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCS  178 (457)
T ss_dssp             CEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSC-CC----CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECC
T ss_pred             CEEECCCCcCCee-c--CCCCCcCCEEECCCCccce-ec----cccCCcCCEEECCCCCccccc--ccccCCcCCEEECC
Confidence            6666666666642 2  5566666666666666654 22    455666666666666444333  34555566666666


Q ss_pred             CCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCc
Q 040113          361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI  440 (887)
Q Consensus       361 ~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~  440 (887)
                      +|++++ +|  +..+++|++|++++|.+++..     +..+++|+.|++++|.+                         .
T Consensus       179 ~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~~-----l~~l~~L~~L~Ls~N~l-------------------------~  225 (457)
T 3bz5_A          179 FNKITE-LD--VSQNKLLNRLNCDTNNITKLD-----LNQNIQLTFLDCSSNKL-------------------------T  225 (457)
T ss_dssp             SSCCCC-CC--CTTCTTCCEEECCSSCCSCCC-----CTTCTTCSEEECCSSCC-------------------------S
T ss_pred             CCccce-ec--cccCCCCCEEECcCCcCCeec-----cccCCCCCEEECcCCcc-------------------------c
Confidence            665554 22  455555555555555555431     34444444444444432                         2


Q ss_pred             ccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCC
Q 040113          441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLP  520 (887)
Q Consensus       441 ~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~  520 (887)
                      .+|  +..+++|+.|++++|++++..+.     .+++|+.|++++|.                                 
T Consensus       226 ~ip--~~~l~~L~~L~l~~N~l~~~~~~-----~l~~L~~L~l~~n~---------------------------------  265 (457)
T 3bz5_A          226 EID--VTPLTQLTYFDCSVNPLTELDVS-----TLSKLTTLHCIQTD---------------------------------  265 (457)
T ss_dssp             CCC--CTTCTTCSEEECCSSCCSCCCCT-----TCTTCCEEECTTCC---------------------------------
T ss_pred             ccC--ccccCCCCEEEeeCCcCCCcCHH-----HCCCCCEEeccCCC---------------------------------
Confidence            333  44555666666666666553221     14455555554432                                 


Q ss_pred             CCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCccc
Q 040113          521 VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG  600 (887)
Q Consensus       521 ~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~  600 (887)
                           ++.+++++|.+.+.+|  ++.+++|+.|++++|...+.+|...   . +|+.|++++|             ++|+
T Consensus       266 -----L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~-~L~~L~l~~~-------------~~L~  321 (457)
T 3bz5_A          266 -----LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---A-GITELDLSQN-------------PKLV  321 (457)
T ss_dssp             -----CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---C-CCSCCCCTTC-------------TTCC
T ss_pred             -----CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---C-cceEechhhc-------------ccCC
Confidence                 2334455555556665  4578899999999998888777532   3 5777776665             5899


Q ss_pred             EEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCC
Q 040113          601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN  680 (887)
Q Consensus       601 ~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~  680 (887)
                      +|++++|++++. +  +.++++|+.|++++|++++.        +.|..|++++|.+.|.       ..+..|..+++++
T Consensus       322 ~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~l--------~~L~~L~l~~n~l~g~-------~~~~~l~~l~l~~  383 (457)
T 3bz5_A          322 YLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQDF--------SSVGKIPALNNNFEAE-------GQTITMPKETLTN  383 (457)
T ss_dssp             EEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCBC--------TTGGGSSGGGTSEEEE-------EEEEECCCBCCBT
T ss_pred             EEECCCCccccc-c--cccCCcCcEEECCCCCCCCc--------cccccccccCCcEEec-------ceeeecCcccccc
Confidence            999999999985 3  88999999999999999873        5677778999999886       3456788899999


Q ss_pred             CcCcccCChhhhhccc
Q 040113          681 NRFTGKLPSKSFLCWN  696 (887)
Q Consensus       681 N~l~~~ip~~~~~~~~  696 (887)
                      |+++|.+|...+....
T Consensus       384 N~l~g~ip~~~~~~~~  399 (457)
T 3bz5_A          384 NSLTIAVSPDLLDQFG  399 (457)
T ss_dssp             TBEEEECCTTCBCTTS
T ss_pred             CcEEEEcChhHhcccC
Confidence            9999999987554433

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-34  Score=326.76  Aligned_cols=210  Identities=21%  Similarity=0.245  Sum_probs=119.2

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      .++++++|++|++++|.+++  +| .++.+++|++|++++|.+.+ +|  ++.+++|++|++++|.+..++         
T Consensus        37 ~~~~l~~L~~L~Ls~n~l~~--~~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~~---------  101 (457)
T 3bz5_A           37 SEEQLATLTSLDCHNSSITD--MT-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNLD---------  101 (457)
T ss_dssp             EHHHHTTCCEEECCSSCCCC--CT-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---------
T ss_pred             ChhHcCCCCEEEccCCCccc--Ch-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCceee---------
Confidence            66778888888888888875  34 57788888888888888765 34  677777777777777643321         


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      ++.+++|++|++++|.+++. +  ++.+++|++|++++|.+++.   .++.+++|++|++++|...+.+  .++.+++|+
T Consensus       102 ~~~l~~L~~L~L~~N~l~~l-~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~  173 (457)
T 3bz5_A          102 VTPLTKLTYLNCDTNKLTKL-D--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLT  173 (457)
T ss_dssp             CTTCTTCCEEECCSSCCSCC-C--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCC
T ss_pred             cCCCCcCCEEECCCCcCCee-c--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCC
Confidence            45566666666666666553 2  55556666666666665542   2455555555555555433333  244555555


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR  361 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  361 (887)
                      +|++++|.+++ +|  ++.+++|++|++++|++++. +    ++.+++|+.|++++|++++ +|  ++.+++|++|++++
T Consensus       174 ~L~ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~-~----l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~  242 (457)
T 3bz5_A          174 TLDCSFNKITE-LD--VSQNKLLNRLNCDTNNITKL-D----LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSV  242 (457)
T ss_dssp             EEECCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC-C----CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCS
T ss_pred             EEECCCCccce-ec--cccCCCCCEEECcCCcCCee-c----cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeC
Confidence            55555555543 22  44445555555555544432 1    3344444444444444443 22  33444444444444


Q ss_pred             CcCC
Q 040113          362 CNFS  365 (887)
Q Consensus       362 n~i~  365 (887)
                      |+++
T Consensus       243 N~l~  246 (457)
T 3bz5_A          243 NPLT  246 (457)
T ss_dssp             SCCS
T ss_pred             CcCC
Confidence            4443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=2.7e-33  Score=318.78  Aligned_cols=127  Identities=32%  Similarity=0.446  Sum_probs=61.0

Q ss_pred             hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113          545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE  624 (887)
Q Consensus       545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  624 (887)
                      ..+++|++|++++|.+++..|  ++.++ +|+.|++++|++++.  ..+..+++|+.|++++|.+++..+  +..+++|+
T Consensus       196 ~~l~~L~~L~l~~n~l~~~~~--~~~l~-~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~  268 (466)
T 1o6v_A          196 AKLTNLESLIATNNQISDITP--LGILT-NLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLT  268 (466)
T ss_dssp             GGCTTCSEEECCSSCCCCCGG--GGGCT-TCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCS
T ss_pred             ccCCCCCEEEecCCccccccc--ccccC-CCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCC
Confidence            344555555555555554433  33333 455555555555432  234445555555555555554333  44555555


Q ss_pred             EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113          625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      +|++++|++++..+  +..+++|++|++++|++.+..+    ...+++|+.|++++|+++
T Consensus       269 ~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n~l~  322 (466)
T 1o6v_A          269 ELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFNNIS  322 (466)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSSCCS
T ss_pred             EEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCCcCC
Confidence            55555555554422  4445555555555555444322    133444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=9.1e-33  Score=314.41  Aligned_cols=106  Identities=28%  Similarity=0.408  Sum_probs=59.3

Q ss_pred             hCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113          545 CKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE  624 (887)
Q Consensus       545 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  624 (887)
                      ..+++|+.|++++|++++..+  +..++ +|+.|++++|++++..|  +..+++|+.|++++|++++.  ..+.++++|+
T Consensus       284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~-~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  356 (466)
T 1o6v_A          284 AGLTALTNLELNENQLEDISP--ISNLK-NLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNIN  356 (466)
T ss_dssp             TTCTTCSEEECCSSCCSCCGG--GGGCT-TCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCC
T ss_pred             cCCCccCeEEcCCCcccCchh--hcCCC-CCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCC
Confidence            345556666666665554333  44444 45566666665555443  44555666666666655543  3455566666


Q ss_pred             EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccc
Q 040113          625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYG  659 (887)
Q Consensus       625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  659 (887)
                      .|++++|++++..|  +..+++|+.|++++|++++
T Consensus       357 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          357 WLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             EEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             EEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            66666666665544  5556666666666666555

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=4.1e-34  Score=306.92  Aligned_cols=260  Identities=33%  Similarity=0.513  Sum_probs=217.0

Q ss_pred             CCCCeEEcCCCccCC--CCCCcccccCCcceEEecCC-CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCc
Q 040113          548 DSLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE  624 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~  624 (887)
                      .+++.|++++|.+++  .+|..+..++ +|++|++++ |++.+.+|..|..+++|++|++++|++++.+|..|.++++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence            467777777777777  6777777777 677777774 777777777777777888888888888777777777788888


Q ss_pred             EEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCC-CCCEEEcCCCcCcccCChhhhhccccchhccc
Q 040113          625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS-KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNT  703 (887)
Q Consensus       625 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~-~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~  703 (887)
                      +|++++|++++.+|..+..+++|++|++++|++++.+|..+  ..++ +|+.|++++|++++.+|... ..         
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l--~~l~~~L~~L~L~~N~l~~~~~~~~-~~---------  196 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN---------  196 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG---------
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHH--hhhhhcCcEEECcCCeeeccCChHH-hC---------
Confidence            88888888877777778888888888888888877766655  5566 88888888888887777541 10         


Q ss_pred             CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113          704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL  783 (887)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  783 (887)
                                                                .. |+.|++++|.+++.+|..++.+++|++|+|++|.+
T Consensus       197 ------------------------------------------l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l  233 (313)
T 1ogq_A          197 ------------------------------------------LN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSL  233 (313)
T ss_dssp             ------------------------------------------CC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEE
T ss_pred             ------------------------------------------Cc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCce
Confidence                                                      22 88999999999999999999999999999999999


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccccccCCCcCCCCCCCCCC
Q 040113          784 QGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSRE  863 (887)
Q Consensus       784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~  863 (887)
                      ++.+|. +..+++|++|+|++|++++.+|..+..+++|++|++++|+++|.+|...++..+....+.||+++||.|+. .
T Consensus       234 ~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~l~~L~~l~l~~N~~lc~~p~~-~  311 (313)
T 1ogq_A          234 AFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-A  311 (313)
T ss_dssp             CCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-C
T ss_pred             eeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCccccccChHHhcCCCCccCCCCC-C
Confidence            988777 88999999999999999999999999999999999999999999999988888999999999999999876 5


Q ss_pred             CC
Q 040113          864 CE  865 (887)
Q Consensus       864 c~  865 (887)
                      |.
T Consensus       312 C~  313 (313)
T 1ogq_A          312 CT  313 (313)
T ss_dssp             CC
T ss_pred             CC
Confidence            73

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=1.5e-33  Score=322.51  Aligned_cols=344  Identities=19%  Similarity=0.156  Sum_probs=242.7

Q ss_pred             eeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCC
Q 040113          433 GLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS  512 (887)
Q Consensus       433 ~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~  512 (887)
                      +.++..+..+|..+.  +.++.|++++|.+++..+..+..  +++|++|++++|.++.+.+..+   ...+.|++|++++
T Consensus        17 ~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~--l~~L~~L~L~~n~i~~~~~~~~---~~l~~L~~L~L~~   89 (477)
T 2id5_A           17 LCHRKRFVAVPEGIP--TETRLLDLGKNRIKTLNQDEFAS--FPHLEELELNENIVSAVEPGAF---NNLFNLRTLGLRS   89 (477)
T ss_dssp             ECCSCCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTT--CTTCCEEECTTSCCCEECTTTT---TTCTTCCEEECCS
T ss_pred             EeCCCCcCcCCCCCC--CCCcEEECCCCccceECHhHccC--CCCCCEEECCCCccCEeChhhh---hCCccCCEEECCC
Confidence            333334444444332  34555555555555554444443  5555555555555554433221   1112233333333


Q ss_pred             cccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcc
Q 040113          513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNT  592 (887)
Q Consensus       513 n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~  592 (887)
                      |.+                     .+..+..|.++++|++|++++|.+.+..|..+..++ +|++|++++|++++..+..
T Consensus        90 n~l---------------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~  147 (477)
T 2id5_A           90 NRL---------------------KLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLY-NLKSLEVGDNDLVYISHRA  147 (477)
T ss_dssp             SCC---------------------CSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEEECCTTCCEECTTS
T ss_pred             CcC---------------------CccCcccccCCCCCCEEECCCCccccCChhHccccc-cCCEEECCCCccceeChhh
Confidence            332                     223334466778888888888888877788888887 6888888888888888888


Q ss_pred             ccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCC
Q 040113          593 FMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK  672 (887)
Q Consensus       593 ~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  672 (887)
                      |..+++|+.|++++|++++..+..+.++++|+.|++++|++.+..+..|..+++|+.|++++|++.+.++...  ....+
T Consensus       148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~~~~  225 (477)
T 2id5_A          148 FSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNC--LYGLN  225 (477)
T ss_dssp             STTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTT--TTTCC
T ss_pred             ccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCccc--ccCcc
Confidence            8888888888888888887766778888888888888888888877788888888888888888777766554  33458


Q ss_pred             CCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEE
Q 040113          673 LRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSI  752 (887)
Q Consensus       673 L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L  752 (887)
                      |+.|++++|+++ .+|...+..                                                   .+.|+.|
T Consensus       226 L~~L~l~~n~l~-~~~~~~~~~---------------------------------------------------l~~L~~L  253 (477)
T 2id5_A          226 LTSLSITHCNLT-AVPYLAVRH---------------------------------------------------LVYLRFL  253 (477)
T ss_dssp             CSEEEEESSCCC-SCCHHHHTT---------------------------------------------------CTTCCEE
T ss_pred             ccEEECcCCccc-ccCHHHhcC---------------------------------------------------ccccCee
Confidence            888888888887 556443322                                                   4568899


Q ss_pred             EeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113          753 ILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT  832 (887)
Q Consensus       753 ~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~  832 (887)
                      +|++|.+++..+..+..+++|+.|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|++++|+++
T Consensus       254 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~  333 (477)
T 2id5_A          254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA  333 (477)
T ss_dssp             ECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEE
T ss_pred             ECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCcc
Confidence            99999999888888999999999999999999999999999999999999999999888888899999999999999998


Q ss_pred             ccCCCCCcCccccccccCCCcCCCCCC
Q 040113          833 GPIPQGRQFATFDNSSFESNSGLCGRP  859 (887)
Q Consensus       833 g~iP~~~~~~~~~~~~~~~n~~lcg~~  859 (887)
                      +.-+..-.+.......+.++...|+.|
T Consensus       334 c~c~~~~~~~~~~~~~~~~~~~~C~~p  360 (477)
T 2id5_A          334 CDCRLLWVFRRRWRLNFNRQQPTCATP  360 (477)
T ss_dssp             CSGGGHHHHTTTTSSCCTTCCCBEEES
T ss_pred             CccchHhHHhhhhccccCccCceeCCc
Confidence            643311001111223455666666443

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=7.8e-32  Score=308.25  Aligned_cols=323  Identities=19%  Similarity=0.202  Sum_probs=265.3

Q ss_pred             cEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEcc
Q 040113          453 MLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVS  532 (887)
Q Consensus       453 ~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~  532 (887)
                      +.++.+++.++ .+|..+    .+.++.|++++|.++.+.+..+.                        ..+++++|+++
T Consensus        14 ~~v~c~~~~l~-~ip~~~----~~~l~~L~L~~n~l~~~~~~~~~------------------------~l~~L~~L~L~   64 (477)
T 2id5_A           14 RAVLCHRKRFV-AVPEGI----PTETRLLDLGKNRIKTLNQDEFA------------------------SFPHLEELELN   64 (477)
T ss_dssp             TEEECCSCCCS-SCCSCC----CTTCSEEECCSSCCCEECTTTTT------------------------TCTTCCEEECT
T ss_pred             CEEEeCCCCcC-cCCCCC----CCCCcEEECCCCccceECHhHcc------------------------CCCCCCEEECC
Confidence            45666666665 445443    34666677776666655433221                        13456666666


Q ss_pred             CccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeee
Q 040113          533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR  612 (887)
Q Consensus       533 ~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  612 (887)
                      +|.+.+..|..|.++++|++|+|++|.+++..+..|.+++ +|++|++++|++++..+..|..+++|++|++++|.+++.
T Consensus        65 ~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~  143 (477)
T 2id5_A           65 ENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYI  143 (477)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred             CCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC-CCCEEECCCCccccCChhHccccccCCEEECCCCcccee
Confidence            6666677788899999999999999999977777788888 799999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113          613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF  692 (887)
Q Consensus       613 ~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  692 (887)
                      .+..|.++++|++|++++|++++..+..+..+++|+.|++++|.+.+..+..+  ..+++|+.|++++|++.+.+|...+
T Consensus       144 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~--~~l~~L~~L~l~~~~~~~~~~~~~~  221 (477)
T 2id5_A          144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSF--KRLYRLKVLEISHWPYLDTMTPNCL  221 (477)
T ss_dssp             CTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCS--CSCTTCCEEEEECCTTCCEECTTTT
T ss_pred             ChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhc--ccCcccceeeCCCCccccccCcccc
Confidence            89999999999999999999999888889999999999999999998866555  7789999999999988877775421


Q ss_pred             hccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccC
Q 040113          693 LCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG  772 (887)
Q Consensus       693 ~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~  772 (887)
                      .                                                    ...|+.|+|++|++++..+..+..+++
T Consensus       222 ~----------------------------------------------------~~~L~~L~l~~n~l~~~~~~~~~~l~~  249 (477)
T 2id5_A          222 Y----------------------------------------------------GLNLTSLSITHCNLTAVPYLAVRHLVY  249 (477)
T ss_dssp             T----------------------------------------------------TCCCSEEEEESSCCCSCCHHHHTTCTT
T ss_pred             c----------------------------------------------------CccccEEECcCCcccccCHHHhcCccc
Confidence            1                                                    236899999999999776678999999


Q ss_pred             CCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC-CcCccccccccCC
Q 040113          773 LQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFES  851 (887)
Q Consensus       773 L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~  851 (887)
                      |+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..+..+++|++|++++|++++..|.. ..+..+....+.+
T Consensus       250 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~  329 (477)
T 2id5_A          250 LRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDS  329 (477)
T ss_dssp             CCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCS
T ss_pred             cCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccC
Confidence            999999999999999999999999999999999999999999999999999999999999754432 2334455667788


Q ss_pred             CcCCCCCC
Q 040113          852 NSGLCGRP  859 (887)
Q Consensus       852 n~~lcg~~  859 (887)
                      |+..|+++
T Consensus       330 N~l~c~c~  337 (477)
T 2id5_A          330 NPLACDCR  337 (477)
T ss_dssp             SCEECSGG
T ss_pred             CCccCccc
Confidence            88888754

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=1.9e-31  Score=296.40  Aligned_cols=350  Identities=19%  Similarity=0.152  Sum_probs=192.4

Q ss_pred             CCCCCCCCCCCCCc-cccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCcc-ccCCCC
Q 040113           76 AASWKPEEGNIDCC-SWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSE-IINLSR  153 (887)
Q Consensus        76 ~~~w~~~~~~~~~c-~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~-~~~l~~  153 (887)
                      +++|..   +.+|| .|.+..|...     .+.+...........  .-..++++++|+++++.++.  +|.. +..+++
T Consensus         3 ~~~~~~---~~~C~~~~~~~~c~~~-----~~~i~~~~~~~~~~~--~~~~l~~l~~l~l~~~~l~~--l~~~~~~~l~~   70 (390)
T 3o6n_A            3 VKPRQP---EYKCIDSNLQYDCVFY-----DVHIDMQTQDVYFGF--EDITLNNQKIVTFKNSTMRK--LPAALLDSFRQ   70 (390)
T ss_dssp             ----CC---EECBCC------EEEE-----SCEECSSCCCCEESC--SSGGGCCCSEEEEESCEESE--ECTHHHHHCCC
T ss_pred             cCCCCC---ccceehhhhhhcccee-----eeeeecccccccccc--cccccCCceEEEecCCchhh--CChhHhccccc
Confidence            567876   56666 4666666321     112222111111111  33456788888888888775  4443 677888


Q ss_pred             CCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 040113          154 LSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLT  233 (887)
Q Consensus       154 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  233 (887)
                      |++|++++|.+.+..+..+..+++|++|++++|.+..+.      +..++.+++|++|++++|.+....+..+..+++|+
T Consensus        71 L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~  144 (390)
T 3o6n_A           71 VELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLT  144 (390)
T ss_dssp             CSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCC------HHHhcCCCCCCEEECCCCccCcCCHHHhcCCCCCc
Confidence            888888888887666667777777777777777643332      33455666666666666666544444455566666


Q ss_pred             EEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCc
Q 040113          234 FLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK  313 (887)
Q Consensus       234 ~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  313 (887)
                      +|++++|.+.+..+..+..+++|++|++++|.+++.   .++.+++|+.|++++|.+++     +...++|++|++++|.
T Consensus       145 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~  216 (390)
T 3o6n_A          145 TLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNLLST-----LAIPIAVEELDASHNS  216 (390)
T ss_dssp             EEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSSCCSE-----EECCSSCSEEECCSSC
T ss_pred             EEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccccccc-----cCCCCcceEEECCCCe
Confidence            666666666555555555566666666666655432   23344555555555555542     1223355555555555


Q ss_pred             CCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccc
Q 040113          314 LSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME  393 (887)
Q Consensus       314 l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~  393 (887)
                      +.. ++.    ...++|+.|++++|.+++.  ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++...
T Consensus       217 l~~-~~~----~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  289 (390)
T 3o6n_A          217 INV-VRG----PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVALNL  289 (390)
T ss_dssp             CCE-EEC----CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEEEC
T ss_pred             eee-ccc----cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcccCc
Confidence            542 221    1234555555555555432  334445555555555555554444445555555555555554443211


Q ss_pred             hhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCcccccc
Q 040113          394 LDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDP  473 (887)
Q Consensus       394 ~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~  473 (887)
                       .  ...                         +++|+.+++++|.+..+|..+..+++|+.|++++|++++. +  +.. 
T Consensus       290 -~--~~~-------------------------l~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~L~~N~i~~~-~--~~~-  337 (390)
T 3o6n_A          290 -Y--GQP-------------------------IPTLKVLDLSHNHLLHVERNQPQFDRLENLYLDHNSIVTL-K--LST-  337 (390)
T ss_dssp             -S--SSC-------------------------CTTCCEEECCSSCCCCCGGGHHHHTTCSEEECCSSCCCCC-C--CCT-
T ss_pred             -c--cCC-------------------------CCCCCEEECCCCcceecCccccccCcCCEEECCCCcccee-C--chh-
Confidence             1  223                         4455555555555556667777888888888888888754 2  222 


Q ss_pred             CCCCCcEEEccCCcccCc
Q 040113          474 STQNLSALNLSHNLLTGF  491 (887)
Q Consensus       474 ~~~~L~~L~Ls~n~l~~~  491 (887)
                       +++|+.|++++|++...
T Consensus       338 -~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          338 -HHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -TCCCSEEECCSSCEEHH
T ss_pred             -hccCCEEEcCCCCccch
Confidence             67888888888877653

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=2.1e-30  Score=303.97  Aligned_cols=313  Identities=19%  Similarity=0.143  Sum_probs=188.6

Q ss_pred             ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113          124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE  203 (887)
Q Consensus       124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~  203 (887)
                      ..+.+++.|++++|.+... .+..++.+++|++|+|++|.+.+..|..++.+++|++|++++|.+..+.      +..++
T Consensus        48 l~l~~l~~l~l~~~~l~~l-p~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~  120 (597)
T 3oja_B           48 ITLNNQKIVTFKNSTMRKL-PAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP------PHVFQ  120 (597)
T ss_dssp             GGGCCCSEEEESSCEESEE-CTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCC------TTTTT
T ss_pred             ccCCCceEEEeeCCCCCCc-CHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCC------HHHHc
Confidence            3467788888888887753 2334677888888888888887776677777777777777777644332      34456


Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      .+++|++|++++|.+.+..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+++.   .++.+++|+.|
T Consensus       121 ~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L  197 (597)
T 3oja_B          121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHA  197 (597)
T ss_dssp             TCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEE
T ss_pred             CCCCCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhh
Confidence            666666666666666655444456666666666666666655555566666666666666665543   13345556666


Q ss_pred             EccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCc
Q 040113          284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN  363 (887)
Q Consensus       284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  363 (887)
                      ++++|.+.+     +...++|++|++++|.+... +..    ..++|+.|++++|.+++  +..+..+++|++|++++|.
T Consensus       198 ~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~-~~~----~~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~  265 (597)
T 3oja_B          198 NVSYNLLST-----LAIPIAVEELDASHNSINVV-RGP----VNVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNE  265 (597)
T ss_dssp             ECCSSCCSE-----EECCTTCSEEECCSSCCCEE-ECS----CCSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC
T ss_pred             hcccCcccc-----ccCCchhheeeccCCccccc-ccc----cCCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCc
Confidence            666665542     22334556666665555422 211    12455555555555553  2445555555555555555


Q ss_pred             CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC
Q 040113          364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP  443 (887)
Q Consensus       364 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~  443 (887)
                      +.+..|..+..+++|++|++++|.+.+... .  ...                         +++|+.|++++|.+..+|
T Consensus       266 l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~-~--~~~-------------------------l~~L~~L~Ls~N~l~~i~  317 (597)
T 3oja_B          266 LEKIMYHPFVKMQRLERLYISNNRLVALNL-Y--GQP-------------------------IPTLKVLDLSHNHLLHVE  317 (597)
T ss_dssp             CCEEESGGGTTCSSCCEEECTTSCCCEEEC-S--SSC-------------------------CTTCCEEECCSSCCCCCG
T ss_pred             cCCCCHHHhcCccCCCEEECCCCCCCCCCc-c--ccc-------------------------CCCCcEEECCCCCCCccC
Confidence            555555555555555555555555544221 1  233                         344555555555555667


Q ss_pred             hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCc
Q 040113          444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF  491 (887)
Q Consensus       444 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~  491 (887)
                      ..+..+++|+.|++++|.+.+..   +.  .+++|+.|++++|.+.+.
T Consensus       318 ~~~~~l~~L~~L~L~~N~l~~~~---~~--~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          318 RNQPQFDRLENLYLDHNSIVTLK---LS--THHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             GGHHHHTTCSEEECCSSCCCCCC---CC--TTCCCSEEECCSSCEEHH
T ss_pred             cccccCCCCCEEECCCCCCCCcC---hh--hcCCCCEEEeeCCCCCCh
Confidence            77788888888888888887543   22  267788888888877643

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=1.2e-29  Score=277.49  Aligned_cols=306  Identities=27%  Similarity=0.347  Sum_probs=156.2

Q ss_pred             ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113          124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE  203 (887)
Q Consensus       124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~  203 (887)
                      ..+++|++|+++++.+..  +| .++.+++|++|++++|.+.+ +|. +..+++|++|++++|.+..+        ..+.
T Consensus        41 ~~l~~L~~L~l~~~~i~~--~~-~~~~~~~L~~L~l~~n~i~~-~~~-~~~l~~L~~L~L~~n~i~~~--------~~~~  107 (347)
T 4fmz_A           41 EELESITKLVVAGEKVAS--IQ-GIEYLTNLEYLNLNGNQITD-ISP-LSNLVKLTNLYIGTNKITDI--------SALQ  107 (347)
T ss_dssp             HHHTTCSEEECCSSCCCC--CT-TGGGCTTCCEEECCSSCCCC-CGG-GTTCTTCCEEECCSSCCCCC--------GGGT
T ss_pred             hhcccccEEEEeCCcccc--ch-hhhhcCCccEEEccCCcccc-chh-hhcCCcCCEEEccCCcccCc--------hHHc
Confidence            345555555555555543  22 25555566666666555543 222 55555555555555553322        1245


Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      .+++|++|++++|.+.+..+  +..+++|++|++++|.....++ .+..+++|++|++++|.+.+..+  +..+++|++|
T Consensus       108 ~l~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L  182 (347)
T 4fmz_A          108 NLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSL  182 (347)
T ss_dssp             TCTTCSEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEE
T ss_pred             CCCcCCEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEE
Confidence            55555555555555544322  5555555555555554333222 25555556666666555543322  5555556666


Q ss_pred             EccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCc
Q 040113          284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN  363 (887)
Q Consensus       284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  363 (887)
                      ++++|.+.+..+  +..+++|++|++++|.+.+..+    +..+++|++|++++|.+++..+  +..+++|++|++++|.
T Consensus       183 ~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~----~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          183 SLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP----VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             ECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred             EccCCccccccc--ccCCCccceeecccCCCCCCch----hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCc
Confidence            666555553322  5555556666666555553222    4455555556655555553322  5555555555555555


Q ss_pred             CCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC
Q 040113          364 FSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP  443 (887)
Q Consensus       364 i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~  443 (887)
                      +++.  ..+..+++|++|++++|.+.+..    .+..+++|+.|++++|.+...                        .+
T Consensus       255 l~~~--~~~~~l~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~L~~n~l~~~------------------------~~  304 (347)
T 4fmz_A          255 ISDI--NAVKDLTKLKMLNVGSNQISDIS----VLNNLSQLNSLFLNNNQLGNE------------------------DM  304 (347)
T ss_dssp             CCCC--GGGTTCTTCCEEECCSSCCCCCG----GGGGCTTCSEEECCSSCCCGG------------------------GH
T ss_pred             cCCC--hhHhcCCCcCEEEccCCccCCCh----hhcCCCCCCEEECcCCcCCCc------------------------Ch
Confidence            5432  33455555555555555554431    134445555555555433222                        23


Q ss_pred             hhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCccc
Q 040113          444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT  489 (887)
Q Consensus       444 ~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~  489 (887)
                      ..+..+++|++|++++|++++..|  +..  +++|++|++++|.++
T Consensus       305 ~~l~~l~~L~~L~L~~n~l~~~~~--~~~--l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          305 EVIGGLTNLTTLFLSQNHITDIRP--LAS--LSKMDSADFANQVIK  346 (347)
T ss_dssp             HHHHTCTTCSEEECCSSSCCCCGG--GGG--CTTCSEESSSCC---
T ss_pred             hHhhccccCCEEEccCCccccccC--hhh--hhccceeehhhhccc
Confidence            445556666666666666665544  222  566666666666543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.97  E-value=2e-30  Score=288.24  Aligned_cols=318  Identities=19%  Similarity=0.177  Sum_probs=197.6

Q ss_pred             CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccE
Q 040113          253 LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS  332 (887)
Q Consensus       253 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  332 (887)
                      ++++++|++++|.+....+..+..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..  ++++++|++
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~  121 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV  121 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHH--hcCCCCCCE
Confidence            466777777777665433334566777777777777776555556667777777777777766554544  566666777


Q ss_pred             EEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113          333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       333 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      |++++|.++...+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..     +..+++|+.|++++|
T Consensus       122 L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~L~~L~l~~n  196 (390)
T 3o6n_A          122 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN  196 (390)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred             EECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc-----cccccccceeecccc
Confidence            777776666433334566666666666666666555555666666666666666655431     233344444444444


Q ss_pred             cccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcc
Q 040113          413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD  492 (887)
Q Consensus       413 ~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~  492 (887)
                                                                      .+++.     ..  .++|+.|++++|.++.++
T Consensus       197 ------------------------------------------------~l~~~-----~~--~~~L~~L~l~~n~l~~~~  221 (390)
T 3o6n_A          197 ------------------------------------------------LLSTL-----AI--PIAVEELDASHNSINVVR  221 (390)
T ss_dssp             ------------------------------------------------CCSEE-----EC--CSSCSEEECCSSCCCEEE
T ss_pred             ------------------------------------------------ccccc-----CC--CCcceEEECCCCeeeecc
Confidence                                                            32211     00  223444444444433221


Q ss_pred             ccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccC
Q 040113          493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS  572 (887)
Q Consensus       493 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  572 (887)
                      ..                                                   ..++|+.|++++|.+++.  ..+..++
T Consensus       222 ~~---------------------------------------------------~~~~L~~L~l~~n~l~~~--~~l~~l~  248 (390)
T 3o6n_A          222 GP---------------------------------------------------VNVELTILKLQHNNLTDT--AWLLNYP  248 (390)
T ss_dssp             CC---------------------------------------------------CCSSCCEEECCSSCCCCC--GGGGGCT
T ss_pred             cc---------------------------------------------------ccccccEEECCCCCCccc--HHHcCCC
Confidence            10                                                   124566666666666543  3455555


Q ss_pred             CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113          573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL  652 (887)
Q Consensus       573 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  652 (887)
                       +|++|++++|++++..|..|..+++|++|++++|++++. |..+..+++|++|++++|++.+. |..+..+++|++|++
T Consensus       249 -~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~l~~L~~L~L  325 (390)
T 3o6n_A          249 -GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL  325 (390)
T ss_dssp             -TCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred             -CccEEECCCCcCCCcChhHccccccCCEEECCCCcCccc-CcccCCCCCCCEEECCCCcceec-CccccccCcCCEEEC
Confidence             577777777777777777777777777778877777753 45556778888888888888754 556777888888888


Q ss_pred             cCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113          653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL  693 (887)
Q Consensus       653 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  693 (887)
                      ++|+++...     ...+++|+.|++++|++.+.....++.
T Consensus       326 ~~N~i~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~  361 (390)
T 3o6n_A          326 DHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR  361 (390)
T ss_dssp             CSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             CCCccceeC-----chhhccCCEEEcCCCCccchhHHHHHH
Confidence            888887652     245788889999999888654444333

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=1.6e-31  Score=288.50  Aligned_cols=273  Identities=21%  Similarity=0.257  Sum_probs=174.2

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCC-CCCCCCccccceEecC--------CCCcEEEEE
Q 040113           37 LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPE-EGNIDCCSWDGVECSE--------NTGHVMKLD  107 (887)
Q Consensus        37 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~-~~~~~~c~w~gv~c~~--------~~~~v~~L~  107 (887)
                      .+..+|++||++||+++..++.               ....+|... ....++|.|.|+.|+.        ...+|+.|+
T Consensus        23 ~~~~~~~~aLl~~k~~~~~~~~---------------~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~   87 (328)
T 4fcg_A           23 TALRPYHDVLSQWQRHYNADRN---------------RWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALE   87 (328)
T ss_dssp             CCCCCHHHHHHHHHHHHHHCCT---------------THHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEE
T ss_pred             ccCchHHHHHHHHHHhccCCch---------------hhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEE
Confidence            3456899999999998854432               245678310 0157889999999952        235677777


Q ss_pred             cCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCC
Q 040113          108 LSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS  187 (887)
Q Consensus       108 L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~  187 (887)
                      |+++.+. .++.  .++++++|++|+|++|.++  .+|..++++++|++|+|++|.+. .+|..++++++|++|++++|.
T Consensus        88 L~~n~l~-~lp~--~l~~l~~L~~L~L~~n~l~--~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~  161 (328)
T 4fcg_A           88 LRSVPLP-QFPD--QAFRLSHLQHMTIDAAGLM--ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACP  161 (328)
T ss_dssp             EESSCCS-SCCS--CGGGGTTCSEEEEESSCCC--CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEET
T ss_pred             ccCCCch-hcCh--hhhhCCCCCEEECCCCCcc--chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCC
Confidence            7777766 4443  5666777777777777776  26666777777777777777765 666666667777777766654


Q ss_pred             CCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhh---------cCCCCCCEEEcccCCCCCccccccCCCCCCcE
Q 040113          188 GYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL---------ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLH  258 (887)
Q Consensus       188 ~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l---------~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  258 (887)
                                                    +.+.+|..+         ..+++|++|++++|.++ .+|..+..+++|++
T Consensus       162 ------------------------------~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~  210 (328)
T 4fcg_A          162 ------------------------------ELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS  210 (328)
T ss_dssp             ------------------------------TCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE
T ss_pred             ------------------------------CccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE
Confidence                                          223333222         23566666666666665 45555666666666


Q ss_pred             EeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCC
Q 040113          259 LDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN  338 (887)
Q Consensus       259 L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n  338 (887)
                      |++++|.+.+ +|..++.+++|++|++++|.+.+.+|..++.+++|++|++++|++.+.+|..  ++++++|++|++++|
T Consensus       211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~--~~~l~~L~~L~L~~n  287 (328)
T 4fcg_A          211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD--IHRLTQLEKLDLRGC  287 (328)
T ss_dssp             EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT--GGGCTTCCEEECTTC
T ss_pred             EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh--hhcCCCCCEEeCCCC
Confidence            6666666653 4445666666666666666666666666666666666666666666666655  566666666666666


Q ss_pred             CCCCccccccCCCCCccEEEccCCcC
Q 040113          339 KFSGELHASIGNLRSLEVLAIGRCNF  364 (887)
Q Consensus       339 ~l~~~~~~~l~~l~~L~~L~L~~n~i  364 (887)
                      .+.+.+|..++.+++|+.+++..+.+
T Consensus       288 ~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          288 VNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             TTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             CchhhccHHHhhccCceEEeCCHHHH
Confidence            66666666666666666666665443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.97  E-value=4.7e-30  Score=300.99  Aligned_cols=318  Identities=20%  Similarity=0.197  Sum_probs=217.2

Q ss_pred             CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccE
Q 040113          253 LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQS  332 (887)
Q Consensus       253 l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  332 (887)
                      +.+++.+++++|.+....+..+.++++|++|++++|.+++..|..|+.+++|++|+|++|.+++..|..  ++++++|++
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~  127 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV--FQNVPLLTV  127 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHH--HcCCCCCCE
Confidence            567888899988887555556788888899999888888777778888888888888888888766655  778888888


Q ss_pred             EEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113          333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       333 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      |++++|.+++..+..|+.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..     +..+++|+.|++++|
T Consensus       128 L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~-----~~~l~~L~~L~l~~n  202 (597)
T 3oja_B          128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD-----LSLIPSLFHANVSYN  202 (597)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC-----GGGCTTCSEEECCSS
T ss_pred             EEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC-----hhhhhhhhhhhcccC
Confidence            888888888655555678888888888888888777777788888888888888776542     334455555555554


Q ss_pred             cccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCcc
Q 040113          413 WLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD  492 (887)
Q Consensus       413 ~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~  492 (887)
                      .+...+                             .                          .++|+.|++++|.++.++
T Consensus       203 ~l~~l~-----------------------------~--------------------------~~~L~~L~ls~n~l~~~~  227 (597)
T 3oja_B          203 LLSTLA-----------------------------I--------------------------PIAVEELDASHNSINVVR  227 (597)
T ss_dssp             CCSEEE-----------------------------C--------------------------CTTCSEEECCSSCCCEEE
T ss_pred             cccccc-----------------------------C--------------------------CchhheeeccCCcccccc
Confidence            222111                             1                          223444444444433322


Q ss_pred             ccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccC
Q 040113          493 QQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFS  572 (887)
Q Consensus       493 ~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~  572 (887)
                      ...                                                   .++|+.|++++|.+++  +..+..++
T Consensus       228 ~~~---------------------------------------------------~~~L~~L~L~~n~l~~--~~~l~~l~  254 (597)
T 3oja_B          228 GPV---------------------------------------------------NVELTILKLQHNNLTD--TAWLLNYP  254 (597)
T ss_dssp             CSC---------------------------------------------------CSCCCEEECCSSCCCC--CGGGGGCT
T ss_pred             ccc---------------------------------------------------CCCCCEEECCCCCCCC--ChhhccCC
Confidence            110                                                   1355666666666654  24455555


Q ss_pred             CcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEc
Q 040113          573 DKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLIL  652 (887)
Q Consensus       573 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L  652 (887)
                       +|+.|++++|.+++..|..|..+++|+.|++++|.+++. |..+..+++|+.|+|++|++++. |..+..+++|++|+|
T Consensus       255 -~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~Ls~N~l~~i-~~~~~~l~~L~~L~L  331 (597)
T 3oja_B          255 -GLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVAL-NLYGQPIPTLKVLDLSHNHLLHV-ERNQPQFDRLENLYL  331 (597)
T ss_dssp             -TCSEEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCEE-ECSSSCCTTCCEEECCSSCCCCC-GGGHHHHTTCSEEEC
T ss_pred             -CCCEEECCCCccCCCCHHHhcCccCCCEEECCCCCCCCC-CcccccCCCCcEEECCCCCCCcc-CcccccCCCCCEEEC
Confidence             577777777777666666777777777777777777753 45556677777777777777743 566677778888888


Q ss_pred             cCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113          653 QSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL  693 (887)
Q Consensus       653 ~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  693 (887)
                      ++|++.+..     ...+++|+.|++++|++.+.....++.
T Consensus       332 ~~N~l~~~~-----~~~~~~L~~L~l~~N~~~~~~~~~~~~  367 (597)
T 3oja_B          332 DHNSIVTLK-----LSTHHTLKNLTLSHNDWDCNSLRALFR  367 (597)
T ss_dssp             CSSCCCCCC-----CCTTCCCSEEECCSSCEEHHHHHHHTT
T ss_pred             CCCCCCCcC-----hhhcCCCCEEEeeCCCCCChhHHHHHH
Confidence            888776652     245678888888888887665444433

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.97  E-value=6.5e-29  Score=271.55  Aligned_cols=303  Identities=25%  Similarity=0.367  Sum_probs=255.7

Q ss_pred             CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcE
Q 040113          101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVS  180 (887)
Q Consensus       101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~  180 (887)
                      .++++|+++++.+...  +  .+..+++|++|++++|.+++  ++. +..+++|++|++++|.+.+ +| .+.++++|++
T Consensus        44 ~~L~~L~l~~~~i~~~--~--~~~~~~~L~~L~l~~n~i~~--~~~-~~~l~~L~~L~L~~n~i~~-~~-~~~~l~~L~~  114 (347)
T 4fmz_A           44 ESITKLVVAGEKVASI--Q--GIEYLTNLEYLNLNGNQITD--ISP-LSNLVKLTNLYIGTNKITD-IS-ALQNLTNLRE  114 (347)
T ss_dssp             TTCSEEECCSSCCCCC--T--TGGGCTTCCEEECCSSCCCC--CGG-GTTCTTCCEEECCSSCCCC-CG-GGTTCTTCSE
T ss_pred             ccccEEEEeCCccccc--h--hhhhcCCccEEEccCCcccc--chh-hhcCCcCCEEEccCCcccC-ch-HHcCCCcCCE
Confidence            5789999999988643  2  68899999999999999986  444 9999999999999999865 44 6999999999


Q ss_pred             EEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEe
Q 040113          181 LDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLD  260 (887)
Q Consensus       181 L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  260 (887)
                      |++++|.+..+.       . +..+++|++|++++|.....++. +..+++|++|++++|.+.+..+  +..+++|++|+
T Consensus       115 L~l~~n~i~~~~-------~-~~~l~~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~  183 (347)
T 4fmz_A          115 LYLNEDNISDIS-------P-LANLTKMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLS  183 (347)
T ss_dssp             EECTTSCCCCCG-------G-GTTCTTCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEE
T ss_pred             EECcCCcccCch-------h-hccCCceeEEECCCCCCcccccc-hhhCCCCcEEEecCCCcCCchh--hccCCCCCEEE
Confidence            999999865443       2 88999999999999976655554 8999999999999999886544  88999999999


Q ss_pred             CcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113          261 LSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF  340 (887)
Q Consensus       261 Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  340 (887)
                      +++|.+.+..+  +..+++|++|++++|.+.+..+  +..+++|++|++++|.+++..+    +..+++|++|++++|.+
T Consensus       184 l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~----~~~l~~L~~L~l~~n~l  255 (347)
T 4fmz_A          184 LNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP----LANLSQLTWLEIGTNQI  255 (347)
T ss_dssp             CTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG----GTTCTTCCEEECCSSCC
T ss_pred             ccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc----hhcCCCCCEEECCCCcc
Confidence            99999975433  8899999999999999986655  8899999999999999985433    77899999999999999


Q ss_pred             CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCcccccccc
Q 040113          341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV  420 (887)
Q Consensus       341 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~  420 (887)
                      ++.  ..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+..+..  +..+++|++|++++|.+....  
T Consensus       256 ~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~--l~~l~~L~~L~L~~n~l~~~~--  327 (347)
T 4fmz_A          256 SDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV--IGGLTNLTTLFLSQNHITDIR--  327 (347)
T ss_dssp             CCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHH--HHTCTTCSEEECCSSSCCCCG--
T ss_pred             CCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhH--hhccccCCEEEccCCcccccc--
Confidence            864  5688999999999999999864  46889999999999999998777655  788999999999998665443  


Q ss_pred             cCCCCCCCeeEEeeCCCCCcccChhhhcCCcccEEecccCccc
Q 040113          421 TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH  463 (887)
Q Consensus       421 ~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~  463 (887)
                                             . +..+++|++|++++|.++
T Consensus       328 -----------------------~-~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          328 -----------------------P-LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             -----------------------G-GGGCTTCSEESSSCC---
T ss_pred             -----------------------C-hhhhhccceeehhhhccc
Confidence                                   2 667788888888888764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=3.8e-32  Score=309.72  Aligned_cols=117  Identities=26%  Similarity=0.301  Sum_probs=55.1

Q ss_pred             HHHhhcCCCCCEEEccCCCCCCCchhhh-cCCC----CCCEEEcccCCCCC----ccccccCCCCCCcEEeCcCCCCCCc
Q 040113          199 ANLVEKLSNLETLDLGYVSIRSTIPHNL-ANLS----SLTFLSLHSCGLQG----RIQSSLGNLSKLLHLDLSLNELLGE  269 (887)
Q Consensus       199 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~----~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~  269 (887)
                      +..+..+++|++|++++|.+....+..+ ..++    +|++|++++|.++.    .++..+..+++|++|++++|.+.+.
T Consensus        49 ~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~  128 (461)
T 1z7x_W           49 SSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDA  128 (461)
T ss_dssp             HHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHH
T ss_pred             HHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchH
Confidence            3444444555555555554443322222 1222    45555555555542    3344555555555555555555433


Q ss_pred             chhhc-----cCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCC
Q 040113          270 LPVSI-----GNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       270 ~p~~l-----~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      .+..+     ...++|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus       129 ~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~  183 (461)
T 1z7x_W          129 GLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDIN  183 (461)
T ss_dssp             HHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCH
T ss_pred             HHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcc
Confidence            22222     1234555555555555542    2334444555555555555544

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.2e-27  Score=259.33  Aligned_cols=270  Identities=19%  Similarity=0.192  Sum_probs=222.7

Q ss_pred             CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCC
Q 040113          127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLS  206 (887)
Q Consensus       127 ~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~  206 (887)
                      +.|++|+|++|++++. .+..|+++++|++|+|++|.+.+..|..++++++|++|++++|.+..++       ..+  .+
T Consensus        52 ~~l~~L~L~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l~-------~~~--~~  121 (330)
T 1xku_A           52 PDTALLDLQNNKITEI-KDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP-------EKM--PK  121 (330)
T ss_dssp             TTCCEEECCSSCCCCB-CTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBCC-------SSC--CT
T ss_pred             CCCeEEECCCCcCCEe-ChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCccC-------hhh--cc
Confidence            6899999999999875 4557999999999999999998888999999999999999999866543       111  27


Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC--ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG--RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD  284 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  284 (887)
                      +|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+..+++|++|++++|.++. +|..+.  ++|++|+
T Consensus       122 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~-l~~~~~--~~L~~L~  198 (330)
T 1xku_A          122 TLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLP--PSLTELH  198 (330)
T ss_dssp             TCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCC--TTCSEEE
T ss_pred             cccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-CCcccc--ccCCEEE
Confidence            89999999999998888889999999999999999864  667788999999999999999874 555543  7899999


Q ss_pred             ccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcC
Q 040113          285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF  364 (887)
Q Consensus       285 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i  364 (887)
                      +++|.+++..+..+..+++|++|++++|.+++..+..  +..+++|++|++++|+++ .+|..+..+++|++|++++|++
T Consensus       199 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i  275 (330)
T 1xku_A          199 LDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNI  275 (330)
T ss_dssp             CTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCC
T ss_pred             CCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcC
Confidence            9999999888888999999999999999998766655  788999999999999988 6788888999999999999999


Q ss_pred             CccCCccccC------CCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113          365 SGRIPSSLRN------LTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       365 ~~~~~~~l~~------l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      ++..+..|..      .+.++.+++++|.+.........+..+++++.+++++|
T Consensus       276 ~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N  329 (330)
T 1xku_A          276 SAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY  329 (330)
T ss_dssp             CCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred             CccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence            8766655543      36788899999987642222223777888888888877

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.96  E-value=1.1e-27  Score=259.54  Aligned_cols=292  Identities=19%  Similarity=0.230  Sum_probs=177.8

Q ss_pred             CCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCC
Q 040113          129 LEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNL  208 (887)
Q Consensus       129 L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L  208 (887)
                      +++++++++.++.  +|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..+.      |..++.+++|
T Consensus        33 l~~l~~~~~~l~~--lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~------~~~~~~l~~L  102 (330)
T 1xku_A           33 LRVVQCSDLGLEK--VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------PGAFAPLVKL  102 (330)
T ss_dssp             TTEEECTTSCCCS--CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBC------TTTTTTCTTC
T ss_pred             CeEEEecCCCccc--cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeC------HHHhcCCCCC
Confidence            4444555554442  555443  68899999999998776667888888888888888754332      4556677777


Q ss_pred             CEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCC--cchhhccCCCCCCEEEcc
Q 040113          209 ETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLG--ELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       209 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~--~~p~~l~~l~~L~~L~L~  286 (887)
                      ++|++++|.+.. +|..+.  ++|++|++++|.+.+..+..+.++++|++|++++|.+..  ..+..+.++++|++|+++
T Consensus       103 ~~L~Ls~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~  179 (330)
T 1xku_A          103 ERLYLSKNQLKE-LPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIA  179 (330)
T ss_dssp             CEEECCSSCCSB-CCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECC
T ss_pred             CEEECCCCcCCc-cChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECC
Confidence            777777777663 333332  567777777777666666666667777777777766642  445566666666666666


Q ss_pred             CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCc
Q 040113          287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSG  366 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~  366 (887)
                      +|.++. +|..+.  ++|++|++++|++++..+..  +..+++|++|++++|.+++..+..+..+++|++|++++|.++ 
T Consensus       180 ~n~l~~-l~~~~~--~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-  253 (330)
T 1xku_A          180 DTNITT-IPQGLP--PSLTELHLDGNKITKVDAAS--LKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-  253 (330)
T ss_dssp             SSCCCS-CCSSCC--TTCSEEECTTSCCCEECTGG--GTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-
T ss_pred             CCcccc-CCcccc--ccCCEEECCCCcCCccCHHH--hcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-
Confidence            666663 343332  56666666666666554444  566666666666666666555556666666666666666665 


Q ss_pred             cCCccccCCCCCCEEEcCCCCCccccchhhh----hcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCccc
Q 040113          367 RIPSSLRNLTQLITLDLSQNSYRGTMELDFL----LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEF  442 (887)
Q Consensus       367 ~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~----l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~  442 (887)
                      .+|..+..+++|++|++++|.+++..+..+.    ....+.++.+++++|++....                      ..
T Consensus       254 ~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~----------------------i~  311 (330)
T 1xku_A          254 KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE----------------------IQ  311 (330)
T ss_dssp             SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGG----------------------SC
T ss_pred             cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccc----------------------cC
Confidence            4555666666666666666666554433310    001244455555555433211                      22


Q ss_pred             ChhhhcCCcccEEecccCc
Q 040113          443 PNFLKNQHHLMLLDLSSNR  461 (887)
Q Consensus       443 ~~~l~~~~~L~~L~Ls~n~  461 (887)
                      |..+..+..++.+++++|+
T Consensus       312 ~~~f~~~~~l~~l~L~~N~  330 (330)
T 1xku_A          312 PSTFRCVYVRAAVQLGNYK  330 (330)
T ss_dssp             GGGGTTCCCGGGEEC----
T ss_pred             ccccccccceeEEEecccC
Confidence            3556667777777777764

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.96  E-value=7.8e-31  Score=298.85  Aligned_cols=360  Identities=20%  Similarity=0.146  Sum_probs=244.9

Q ss_pred             CcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCC---CCCccccCCCCCCEEECCCCCCCccCCcccc-CCC
Q 040113          101 GHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSS---EIPSEIINLSRLSYLNLSHSSFFGQIPSEIL-ELV  176 (887)
Q Consensus       101 ~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~---~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~-~l~  176 (887)
                      .+++.|+|+++.+...... ..+..+++|++|+|++|.+++.   .++..+..+++|++|+|++|.+.+..+..+. .++
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~-~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~   81 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWA-ELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ   81 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHH-HHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred             ccceehhhhhcccCchhHH-HHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence            4689999999988654321 1367889999999999998743   2466788889999999999998765554444 355


Q ss_pred             ----CCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc-----CCCCCCEEEcccCCCCCc--
Q 040113          177 ----NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA-----NLSSLTFLSLHSCGLQGR--  245 (887)
Q Consensus       177 ----~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~L~~n~l~~~--  245 (887)
                          +|++|++++|.+....  ...++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.  
T Consensus        82 ~~~~~L~~L~L~~n~i~~~~--~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~  159 (461)
T 1z7x_W           82 TPSCKIQKLSLQNCCLTGAG--CGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASC  159 (461)
T ss_dssp             STTCCCCEEECTTSCCBGGG--HHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGH
T ss_pred             hCCCceeEEEccCCCCCHHH--HHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHH
Confidence                6999999999743211  124677888999999999999988765444332     356899999999988864  


Q ss_pred             --cccccCCCCCCcEEeCcCCCCCCcchhhcc-----CCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113          246 --IQSSLGNLSKLLHLDLSLNELLGELPVSIG-----NLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       246 --~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~-----~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  314 (887)
                        ++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+++.    ++..+..+++|++|++++|.+
T Consensus       160 ~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  239 (461)
T 1z7x_W          160 EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKL  239 (461)
T ss_dssp             HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBC
T ss_pred             HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcC
Confidence              355567788999999999988655444443     366899999999988864    577778888999999999887


Q ss_pred             CCCCCch---hhccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCcccc-----CCCCCCEEE
Q 040113          315 SGEFPWS---IVIGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPSSLR-----NLTQLITLD  382 (887)
Q Consensus       315 ~~~~~~~---~~~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~-----~l~~L~~L~  382 (887)
                      .+.....   .....+++|++|++++|.+++.    ++..+..+++|++|++++|.+.+..+..+.     ..++|++|+
T Consensus       240 ~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~  319 (461)
T 1z7x_W          240 GDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLW  319 (461)
T ss_dssp             HHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred             ChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeE
Confidence            6432111   1133578899999999988754    566677788889999988888654333332     236888888


Q ss_pred             cCCCCCccccc--hhhhhcCCCCCCEEEccCCcccccccccCC----CCCCCeeEEeeCCCCCc-----ccChhhhcCCc
Q 040113          383 LSQNSYRGTME--LDFLLVSLKNLEVLSLSSNWLSLLTKVTSN----TTSQKFTVVGLRSCNLI-----EFPNFLKNQHH  451 (887)
Q Consensus       383 L~~n~l~~~~~--~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~----~~~~~L~~l~l~~~~l~-----~~~~~l~~~~~  451 (887)
                      +++|.+++...  ....+..+++|++|++++|.+...+.....    ...++|+.+++++|.+.     .++..+..+++
T Consensus       320 L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~  399 (461)
T 1z7x_W          320 VKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHS  399 (461)
T ss_dssp             CTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCC
T ss_pred             cCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCC
Confidence            88888876532  122356778888888888866544321100    01234444444444444     33444444444


Q ss_pred             ccEEecccCccc
Q 040113          452 LMLLDLSSNRIH  463 (887)
Q Consensus       452 L~~L~Ls~n~l~  463 (887)
                      |++|++++|+++
T Consensus       400 L~~L~l~~N~i~  411 (461)
T 1z7x_W          400 LRELDLSNNCLG  411 (461)
T ss_dssp             CCEEECCSSSCC
T ss_pred             ccEEECCCCCCC
Confidence            444444444443

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.96  E-value=8.5e-28  Score=260.64  Aligned_cols=284  Identities=18%  Similarity=0.173  Sum_probs=231.7

Q ss_pred             EEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEcc
Q 040113          105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS  184 (887)
Q Consensus       105 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~  184 (887)
                      .++++++.+. .++.  .+  .++|++|++++|.+.+. .|..|+++++|++|++++|.+.+..|..++++++|++|+++
T Consensus        37 ~l~~~~~~l~-~ip~--~~--~~~l~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           37 VVQCSDLGLK-AVPK--EI--SPDTTLLDLQNNDISEL-RKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             EEECCSSCCS-SCCS--CC--CTTCCEEECCSSCCCEE-CTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             EEECCCCCcc-ccCC--CC--CCCCeEEECCCCcCCcc-CHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            3444555554 3332  33  36899999999999865 56689999999999999999988889999999999999999


Q ss_pred             CCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC--ccccccCCCCCCcEEeCc
Q 040113          185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG--RIQSSLGNLSKLLHLDLS  262 (887)
Q Consensus       185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~--~~~~~l~~l~~L~~L~Ls  262 (887)
                      +|.+..++       ..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.++.  ..+..+..+ +|++|+++
T Consensus       111 ~n~l~~l~-------~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~  180 (332)
T 2ft3_A          111 KNHLVEIP-------PNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRIS  180 (332)
T ss_dssp             SSCCCSCC-------SSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCC
T ss_pred             CCcCCccC-------cccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECc
Confidence            99866544       1122  799999999999998888889999999999999999863  667778887 99999999


Q ss_pred             CCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113          263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       263 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  342 (887)
                      +|.+++ +|..+.  ++|++|++++|.+++..+..+..+++|++|++++|++.+..+..  ++.+++|++|++++|+++ 
T Consensus       181 ~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N~l~-  254 (332)
T 2ft3_A          181 EAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNNKLS-  254 (332)
T ss_dssp             SSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSSCCC-
T ss_pred             CCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCCcCe-
Confidence            999975 565544  78999999999999888888999999999999999998766655  788999999999999998 


Q ss_pred             ccccccCCCCCccEEEccCCcCCccCCccccC------CCCCCEEEcCCCCCc--cccchhhhhcCCCCCCEEEccCC
Q 040113          343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRN------LTQLITLDLSQNSYR--GTMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~------l~~L~~L~L~~n~l~--~~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      .+|..+..+++|++|++++|++++..+..+..      ...|+.|++++|.+.  +..+.  .+..+++|+.+++++|
T Consensus       255 ~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~--~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          255 RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPA--TFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGG--GGTTBCCSTTEEC---
T ss_pred             ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcc--cccccchhhhhhcccc
Confidence            77888999999999999999998766666654      367899999999887  33333  3788899999999887

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.95  E-value=7.1e-27  Score=253.35  Aligned_cols=289  Identities=20%  Similarity=0.195  Sum_probs=153.7

Q ss_pred             CCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEE
Q 040113          303 SLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD  382 (887)
Q Consensus       303 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~  382 (887)
                      +++.++++++.++ .+|..  +  .++|+.|++++|.+++..+..+..+++|++|++++|.+++..|..+..+++|++|+
T Consensus        34 ~l~~l~~~~~~l~-~ip~~--~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  108 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKE--I--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLY  108 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSC--C--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEE
T ss_pred             cCCEEECCCCCcc-ccCCC--C--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEE
Confidence            4555555555554 44433  2  24555666666655544455555566666666666665555555555556666666


Q ss_pred             cCCCCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccC-hhhhcCCcccEEecccCc
Q 040113          383 LSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP-NFLKNQHHLMLLDLSSNR  461 (887)
Q Consensus       383 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~-~~l~~~~~L~~L~Ls~n~  461 (887)
                      +++|.+..... .  +  .++|++|++++|.+.                         .++ ..+..+++|+.|++++|.
T Consensus       109 L~~n~l~~l~~-~--~--~~~L~~L~l~~n~i~-------------------------~~~~~~~~~l~~L~~L~l~~n~  158 (332)
T 2ft3_A          109 ISKNHLVEIPP-N--L--PSSLVELRIHDNRIR-------------------------KVPKGVFSGLRNMNCIEMGGNP  158 (332)
T ss_dssp             CCSSCCCSCCS-S--C--CTTCCEEECCSSCCC-------------------------CCCSGGGSSCSSCCEEECCSCC
T ss_pred             CCCCcCCccCc-c--c--cccCCEEECCCCccC-------------------------ccCHhHhCCCccCCEEECCCCc
Confidence            66555542221 1  0  134444444444322                         222 235666777777777777


Q ss_pred             ccC--CCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEEccCcccccc
Q 040113          462 IHG--KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGE  539 (887)
Q Consensus       462 l~~--~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~  539 (887)
                      ++.  ..+..+..  + +|+.|++++|.++.++..                                             
T Consensus       159 l~~~~~~~~~~~~--l-~L~~L~l~~n~l~~l~~~---------------------------------------------  190 (332)
T 2ft3_A          159 LENSGFEPGAFDG--L-KLNYLRISEAKLTGIPKD---------------------------------------------  190 (332)
T ss_dssp             CBGGGSCTTSSCS--C-CCSCCBCCSSBCSSCCSS---------------------------------------------
T ss_pred             cccCCCCcccccC--C-ccCEEECcCCCCCccCcc---------------------------------------------
Confidence            752  44444433  2 555555555554443221                                             


Q ss_pred             CChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccC
Q 040113          540 IPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLIN  619 (887)
Q Consensus       540 ~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~  619 (887)
                          +  .++|++|++++|.+++..+..+..++ +|++|++++|++++..+..+..+++|++|++++|+++ .+|..+..
T Consensus       191 ----~--~~~L~~L~l~~n~i~~~~~~~l~~l~-~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~  262 (332)
T 2ft3_A          191 ----L--PETLNELHLDHNKIQAIELEDLLRYS-KLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPD  262 (332)
T ss_dssp             ----S--CSSCSCCBCCSSCCCCCCTTSSTTCT-TCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGG
T ss_pred             ----c--cCCCCEEECCCCcCCccCHHHhcCCC-CCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhc
Confidence                1  13555566666666555555555555 4666666666666555555666666666666666666 45555666


Q ss_pred             CCCCcEEeCCCCcCCCCCCccccC------CCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCc
Q 040113          620 CSKLEFLDIGDNQIRDIFPSWLGT------LPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR  682 (887)
Q Consensus       620 l~~L~~L~L~~N~l~~~~~~~~~~------l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~  682 (887)
                      +++|++|++++|++++..+..|..      .++|+.|++++|++......+..+..+++|+.+++++|+
T Consensus       263 l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          263 LKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             CTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             CccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence            666666666666666655554443      245666666666665211111222456666777776664

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.95  E-value=6.1e-30  Score=301.30  Aligned_cols=445  Identities=14%  Similarity=0.106  Sum_probs=220.4

Q ss_pred             CCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC--CCCCcccc------------CCC
Q 040113           87 DCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS--SEIPSEII------------NLS  152 (887)
Q Consensus        87 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~--~~lp~~~~------------~l~  152 (887)
                      -|++|.++.+...    +.+.+.++ .....+  ..+.++++|++|+|+++....  ..+|..++            .++
T Consensus        40 vck~W~~~~~~~~----~~l~~~~~-~~~~~~--~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~  112 (592)
T 3ogk_B           40 VCRRWFKIDSETR----EHVTMALC-YTATPD--RLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLR  112 (592)
T ss_dssp             SCHHHHHHHHHHC----CEEEESCG-GGSCHH--HHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCT
T ss_pred             HhHHHHHhhhccc----cEEEEeec-cccChH--HHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCC
Confidence            4558998864321    23333332 111221  255678889999998754210  01232222            456


Q ss_pred             CCCEEECCCCCCCccCCccccC-CC-CCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113          153 RLSYLNLSHSSFFGQIPSEILE-LV-NLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLS  230 (887)
Q Consensus       153 ~L~~L~Ls~n~~~~~~p~~l~~-l~-~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  230 (887)
                      +|++|+|++|.+.+..+..+.. ++ +|++|++++|..    .....++.....+++|++|++++|.+.+.....     
T Consensus       113 ~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~----~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~-----  183 (592)
T 3ogk_B          113 QLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSG----FTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKW-----  183 (592)
T ss_dssp             TCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEE----EEHHHHHHHHHHCTTCSEEECTTCEEECCCSHH-----
T ss_pred             CCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCC----cCHHHHHHHHhhCCCCCEEECccccccCcchhH-----
Confidence            6666666666555444444444 22 266666655530    011122333334555555555555443331100     


Q ss_pred             CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCC----CcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCE
Q 040113          231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL----GELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEE  306 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~----~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~  306 (887)
                                     ++..+..+++|++|++++|.+.    +.++..+.++++|++|++++|.+.+ ++..+..+++|++
T Consensus       184 ---------------l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~  247 (592)
T 3ogk_B          184 ---------------LHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEE  247 (592)
T ss_dssp             ---------------HHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCE
T ss_pred             ---------------HHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHh
Confidence                           2222334555555555555554    2233444556666666666666553 4555666666666


Q ss_pred             EEccCCcCC---CCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCC-ccccCCCCCCEEE
Q 040113          307 LDLSFNKLS---GEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIP-SSLRNLTQLITLD  382 (887)
Q Consensus       307 L~L~~n~l~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~-~~l~~l~~L~~L~  382 (887)
                      |+++.....   +..+..  +..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+
T Consensus       248 L~l~~~~~~~~~~~~~~~--l~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~  324 (592)
T 3ogk_B          248 FCGGSLNEDIGMPEKYMN--LVFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLE  324 (592)
T ss_dssp             EEECBCCCCTTCTTSSSC--CCCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEE
T ss_pred             hcccccccccchHHHHHH--hhccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEe
Confidence            666542211   111222  5556677777776643 23456666667777777777777654332 3356677777777


Q ss_pred             cCCCCCccccchhhhhcCCCCCCEEEccC-----------CcccccccccCCCCCCCeeEEeeCCCCCcccChhhhcCCc
Q 040113          383 LSQNSYRGTMELDFLLVSLKNLEVLSLSS-----------NWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHH  451 (887)
Q Consensus       383 L~~n~l~~~~~~~~~l~~l~~L~~L~L~~-----------n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~~l~~~~~  451 (887)
                      ++ +.+..... ......+++|++|++++           +.++..                       .++.....+++
T Consensus       325 L~-~~~~~~~l-~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~-----------------------~~~~l~~~~~~  379 (592)
T 3ogk_B          325 TR-NVIGDRGL-EVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQR-----------------------GLIALAQGCQE  379 (592)
T ss_dssp             EE-GGGHHHHH-HHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHH-----------------------HHHHHHHHCTT
T ss_pred             cc-CccCHHHH-HHHHHhCCCCCEEEeecCccccccccccCccCHH-----------------------HHHHHHhhCcc
Confidence            77 33322211 12245677788888773           222111                       12233455777


Q ss_pred             ccEEecccCcccCCCCccccccCCCCCcEEEcc----CCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCc
Q 040113          452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS----HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTV  527 (887)
Q Consensus       452 L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls----~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~  527 (887)
                      |++|+++.|.+++..+..+.. .+++|+.|+++    .|.+++.+..                                 
T Consensus       380 L~~L~l~~~~l~~~~~~~l~~-~~~~L~~L~l~~~~~~n~l~~~p~~---------------------------------  425 (592)
T 3ogk_B          380 LEYMAVYVSDITNESLESIGT-YLKNLCDFRLVLLDREERITDLPLD---------------------------------  425 (592)
T ss_dssp             CSEEEEEESCCCHHHHHHHHH-HCCSCCEEEEEECSCCSCCSSCCCH---------------------------------
T ss_pred             CeEEEeecCCccHHHHHHHHh-hCCCCcEEEEeecCCCccccCchHH---------------------------------
Confidence            888888777776544443321 25566666664    2333322100                                 


Q ss_pred             EEEccCccccccCChhhhCcCCCCeEEcCCCc--cCCCCCCcccccCCcceEEecCCCccccc-CCccccCCCcccEEEc
Q 040113          528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNN--LSGLLPRCLGSFSDKLSILDLRANNFFGT-IPNTFMKESRLGMIDL  604 (887)
Q Consensus       528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~--l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~L  604 (887)
                                ..++..+..+++|+.|++++|.  +++..+..+....++|++|++++|++++. ++..+..+++|++|++
T Consensus       426 ----------~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l  495 (592)
T 3ogk_B          426 ----------NGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEM  495 (592)
T ss_dssp             ----------HHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEE
T ss_pred             ----------HHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeec
Confidence                      0122334556777777776433  44333333333122466666666655432 2223344555555555


Q ss_pred             cCCeeeee-CCccccCCCCCcEEeCCCCcCCC
Q 040113          605 SHNLFQGR-IPRSLINCSKLEFLDIGDNQIRD  635 (887)
Q Consensus       605 s~N~l~~~-~~~~l~~l~~L~~L~L~~N~l~~  635 (887)
                      ++|.+++. ++..+..+++|++|+|++|+++.
T Consensus       496 ~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~  527 (592)
T 3ogk_B          496 RGCCFSERAIAAAVTKLPSLRYLWVQGYRASM  527 (592)
T ss_dssp             ESCCCBHHHHHHHHHHCSSCCEEEEESCBCCT
T ss_pred             cCCCCcHHHHHHHHHhcCccCeeECcCCcCCH
Confidence            55554432 12222344555555555555443

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=3.2e-27  Score=258.45  Aligned_cols=285  Identities=20%  Similarity=0.222  Sum_probs=227.8

Q ss_pred             CCCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 040113           85 NIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF  164 (887)
Q Consensus        85 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~  164 (887)
                      +...|.|.|+ |+-          +++.+. .++.  .+.  ++|++|++++|.+++. .+..++++++|++|++++|.+
T Consensus        26 ~~~~C~~~~~-c~~----------~~~~l~-~iP~--~~~--~~L~~L~l~~n~i~~~-~~~~~~~l~~L~~L~L~~n~l   88 (353)
T 2z80_A           26 ASLSCDRNGI-CKG----------SSGSLN-SIPS--GLT--EAVKSLDLSNNRITYI-SNSDLQRCVNLQALVLTSNGI   88 (353)
T ss_dssp             -CCEECTTSE-EEC----------CSTTCS-SCCT--TCC--TTCCEEECTTSCCCEE-CTTTTTTCTTCCEEECTTSCC
T ss_pred             cCCCCCCCeE-eeC----------CCCCcc-cccc--ccc--ccCcEEECCCCcCccc-CHHHhccCCCCCEEECCCCcc
Confidence            4567999887 643          344444 2332  333  5899999999999864 344799999999999999999


Q ss_pred             CccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCch-hhhcCCCCCCEEEcccCC-C
Q 040113          165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIP-HNLANLSSLTFLSLHSCG-L  242 (887)
Q Consensus       165 ~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~-l  242 (887)
                      .+..|..+.++++|++|++++|.+..+.      +..++.+++|++|++++|.+.+..+ ..+..+++|++|++++|. +
T Consensus        89 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~------~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~  162 (353)
T 2z80_A           89 NTIEEDSFSSLGSLEHLDLSYNYLSNLS------SSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTF  162 (353)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCSSCC------HHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSC
T ss_pred             CccCHhhcCCCCCCCEEECCCCcCCcCC------HhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccc
Confidence            8888888999999999999999865443      4558899999999999999986555 578899999999999994 7


Q ss_pred             CCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchh
Q 040113          243 QGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI  322 (887)
Q Consensus       243 ~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  322 (887)
                      .+..+..+.++++|++|++++|.+.+..|..++.+++|++|++++|.+.......+..+++|++|++++|.+++..+...
T Consensus       163 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l  242 (353)
T 2z80_A          163 TKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSEL  242 (353)
T ss_dssp             CEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC--
T ss_pred             cccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCcccccccccc
Confidence            76667889999999999999999998889999999999999999999975444455678999999999999986543321


Q ss_pred             -hccCCCCccEEEccCCCCCC----ccccccCCCCCccEEEccCCcCCccCCcc-ccCCCCCCEEEcCCCCCccccc
Q 040113          323 -VIGNFTQLQSLDFTSNKFSG----ELHASIGNLRSLEVLAIGRCNFSGRIPSS-LRNLTQLITLDLSQNSYRGTME  393 (887)
Q Consensus       323 -~~~~l~~L~~L~L~~n~l~~----~~~~~l~~l~~L~~L~L~~n~i~~~~~~~-l~~l~~L~~L~L~~n~l~~~~~  393 (887)
                       .....+.++.++++++.+.+    .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus       243 ~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          243 STGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             ----CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             ccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence             12345678888999888875    36777888899999999999988 45544 5788999999999998887665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.8e-27  Score=260.50  Aligned_cols=258  Identities=17%  Similarity=0.176  Sum_probs=202.5

Q ss_pred             CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113          524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID  603 (887)
Q Consensus       524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  603 (887)
                      ..++++++++|++.+..+..+.++++|++|++++|.+++..|..+.+++ +|++|++++|++++..+..|..+++|++|+
T Consensus        52 ~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG-SLEHLDLSYNYLSNLSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCSSCCHHHHTTCTTCSEEE
T ss_pred             ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC-CCCEEECCCCcCCcCCHhHhCCCccCCEEE
Confidence            4556666666666655556788889999999999998887788888887 799999999998876666688889999999


Q ss_pred             ccCCeeeeeCC-ccccCCCCCcEEeCCCC-cCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCC
Q 040113          604 LSHNLFQGRIP-RSLINCSKLEFLDIGDN-QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNN  681 (887)
Q Consensus       604 Ls~N~l~~~~~-~~l~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N  681 (887)
                      +++|++++..+ ..+.++++|++|++++| .+.+..+..+..+++|++|++++|++.+..+..+  ..+++|+.|++++|
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~l~~n  208 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSL--KSIQNVSHLILHMK  208 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTT--TTCSEEEEEEEECS
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHH--hccccCCeecCCCC
Confidence            99999886544 47888899999999988 5777777788889999999999999888877665  67888999999998


Q ss_pred             cCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCc
Q 040113          682 RFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDG  761 (887)
Q Consensus       682 ~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~  761 (887)
                      ++. .+|...+..                                                   .+.|+.|++++|.+++
T Consensus       209 ~l~-~~~~~~~~~---------------------------------------------------~~~L~~L~L~~n~l~~  236 (353)
T 2z80_A          209 QHI-LLLEIFVDV---------------------------------------------------TSSVECLELRDTDLDT  236 (353)
T ss_dssp             CST-THHHHHHHH---------------------------------------------------TTTEEEEEEESCBCTT
T ss_pred             ccc-cchhhhhhh---------------------------------------------------cccccEEECCCCcccc
Confidence            874 444332211                                                   4568889999999987


Q ss_pred             cChhhhh---cccCCCEEeCCCCcccc----cCCccccCCCCCCEEeCCCCcccccCCcc-ccCCCCCCeeecccCcccc
Q 040113          762 MIPTSIA---NLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNNFLGQIPQQ-LVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       762 ~ip~~l~---~l~~L~~L~Ls~N~l~~----~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~-l~~L~~L~~L~ls~N~l~g  833 (887)
                      ..+..+.   ....++.++|+++.+++    .+|..++++++|++|||++|+++. +|.. ++.+++|++|++++|++++
T Consensus       237 ~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~-i~~~~~~~l~~L~~L~L~~N~~~~  315 (353)
T 2z80_A          237 FHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTSLQKIWLHTNPWDC  315 (353)
T ss_dssp             CCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             ccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCc-cCHHHHhcCCCCCEEEeeCCCccC
Confidence            6655443   45678888888888877    477888899999999999999984 5554 5889999999999999998


Q ss_pred             cCCC
Q 040113          834 PIPQ  837 (887)
Q Consensus       834 ~iP~  837 (887)
                      ..|.
T Consensus       316 ~~~~  319 (353)
T 2z80_A          316 SCPR  319 (353)
T ss_dssp             CHHH
T ss_pred             cCCC
Confidence            7663

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.7e-25  Score=253.29  Aligned_cols=230  Identities=21%  Similarity=0.217  Sum_probs=163.6

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++++.|+|++|.+++..|..|..++ +|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence            4566666666666666666666666 577777777777666666677777777777777777766666677777777777


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK  707 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~  707 (887)
                      |++|++....+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|++++ +|.  +.              
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~~-~~~--~~--------------  215 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEG-AFEGLFNLKYLNLGMCNIKD-MPN--LT--------------  215 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCTTCCEEECTTSCCSS-CCC--CT--------------
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChh-hccCCCCCCEEECCCCcccc-ccc--cc--------------
Confidence            7777777666666777777777777774443333332 12566777777777777662 231  00              


Q ss_pred             ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccC
Q 040113          708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI  787 (887)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  787 (887)
                                                           .++.|+.|+|++|.+++..|..|.++++|+.|+|++|++++..
T Consensus       216 -------------------------------------~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~  258 (452)
T 3zyi_A          216 -------------------------------------PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIE  258 (452)
T ss_dssp             -------------------------------------TCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEEC
T ss_pred             -------------------------------------ccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceEC
Confidence                                                 0356778888888888888888888888888888888888888


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113          788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g  833 (887)
                      |..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus       259 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          259 RNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             HHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            8888888888888888888887777778888888888888887654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=254.01  Aligned_cols=249  Identities=22%  Similarity=0.239  Sum_probs=207.9

Q ss_pred             CcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEcc
Q 040113          526 TVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS  605 (887)
Q Consensus       526 l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls  605 (887)
                      ...++..+..+. .+|..+.  ++++.|+|++|++++..+..|.+++ +|++|+|++|++++..+..|.++++|++|+|+
T Consensus        45 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~  120 (440)
T 3zyj_A           45 FSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQIIKVNSFKHLR-HLEILQLSRNHIRTIEIGAFNGLANLNTLELF  120 (440)
T ss_dssp             SCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCCEECTTTTSSCS-SCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCCeeCHHHhhCCC-CCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence            345666666554 4555443  6788899999999888888888888 79999999999988888888889999999999


Q ss_pred             CCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc
Q 040113          606 HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG  685 (887)
Q Consensus       606 ~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~  685 (887)
                      +|++++..+..|..+++|++|+|++|++....+..|..+++|++|++++|+..+.++.. .+.++++|+.|++++|.++ 
T Consensus       121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~-~~~~l~~L~~L~L~~n~l~-  198 (440)
T 3zyj_A          121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEG-AFEGLSNLRYLNLAMCNLR-  198 (440)
T ss_dssp             SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTT-TTTTCSSCCEEECTTSCCS-
T ss_pred             CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcc-hhhcccccCeecCCCCcCc-
Confidence            99998777778888899999999999998887778888999999999886554444432 2267888999999999886 


Q ss_pred             cCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChh
Q 040113          686 KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPT  765 (887)
Q Consensus       686 ~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~  765 (887)
                      .+|.  +.                                                   ..+.|+.|+|++|.+++..|.
T Consensus       199 ~~~~--~~---------------------------------------------------~l~~L~~L~Ls~N~l~~~~~~  225 (440)
T 3zyj_A          199 EIPN--LT---------------------------------------------------PLIKLDELDLSGNHLSAIRPG  225 (440)
T ss_dssp             SCCC--CT---------------------------------------------------TCSSCCEEECTTSCCCEECTT
T ss_pred             cccc--cC---------------------------------------------------CCcccCEEECCCCccCccChh
Confidence            4442  00                                                   146799999999999999999


Q ss_pred             hhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113          766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       766 ~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g  833 (887)
                      .|.++++|+.|+|++|++++..|..|.++++|+.|||++|++++..+..+..+++|++|++++|++..
T Consensus       226 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          226 SFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             TTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             hhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            99999999999999999999999999999999999999999999888889999999999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=9.5e-26  Score=255.41  Aligned_cols=252  Identities=19%  Similarity=0.181  Sum_probs=218.6

Q ss_pred             CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      ....++.++..++ .+|..+.   +++++|+|++|++++..+..|..+++|++|++++|++++..+..|.++++|++|+|
T Consensus        55 ~~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L  130 (452)
T 3zyi_A           55 QFSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL  130 (452)
T ss_dssp             SSCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             CCcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence            3567888888887 5776554   37999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY  708 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~  708 (887)
                      ++|++++..+..|..+++|++|+|++|++....+..+  ..+++|+.|++++|...+.+|...|..              
T Consensus       131 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~~~~l~~i~~~~~~~--------------  194 (452)
T 3zyi_A          131 FDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAF--NRVPSLMRLDLGELKKLEYISEGAFEG--------------  194 (452)
T ss_dssp             CSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEECCCCTTCCEECTTTTTT--------------
T ss_pred             CCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHH--hcCCcccEEeCCCCCCccccChhhccC--------------
Confidence            9999999988889999999999999999998766555  789999999999977666666543221              


Q ss_pred             cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113          709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP  788 (887)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  788 (887)
                                                           .+.|+.|+|++|++++. | .+..+++|++|+|++|.+++..|
T Consensus       195 -------------------------------------l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~  235 (452)
T 3zyi_A          195 -------------------------------------LFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRP  235 (452)
T ss_dssp             -------------------------------------CTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECG
T ss_pred             -------------------------------------CCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCc
Confidence                                                 45689999999999964 4 48899999999999999999999


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCCCCC
Q 040113          789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLCGRP  859 (887)
Q Consensus       789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~  859 (887)
                      ..|.++++|+.|+|++|++++..|..|..+++|++|++++|++++..|.. ..+..+....+.+||.-|++.
T Consensus       236 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~  307 (452)
T 3zyi_A          236 GSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNCDCD  307 (452)
T ss_dssp             GGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEECSTT
T ss_pred             ccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcCCCCC
Confidence            99999999999999999999999999999999999999999999655433 234455667788998888765

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=2.7e-26  Score=245.87  Aligned_cols=231  Identities=25%  Similarity=0.311  Sum_probs=139.9

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccccc--CCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT--IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF  625 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~--~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  625 (887)
                      ++|++|++++|.++...+..+.+++ +|++|++++|+++..  .+..+..+++|++|++++|.+.+ +|..+..+++|++
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~-l~~~~~~l~~L~~  105 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEH  105 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEE-EEEEEETCTTCCE
T ss_pred             CCCCEEECCCCccCccCHhHhhccc-cCCEEECCCCccCcccCcccccccccccCEEECCCCcccc-ChhhcCCCCCCCE
Confidence            3455555555555533333344554 455555555555422  23444455666666666666653 3444556666666


Q ss_pred             EeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc-cCChhhhhccccchhccc
Q 040113          626 LDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG-KLPSKSFLCWNAMKIVNT  703 (887)
Q Consensus       626 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~~~~l~~l~~  703 (887)
                      |++++|++++..+ ..+..+++|++|++++|++.+..+..+  ..+++|++|++++|.+.+ .+|.. +.          
T Consensus       106 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~-~~----------  172 (306)
T 2z66_A          106 LDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIF--NGLSSLEVLKMAGNSFQENFLPDI-FT----------  172 (306)
T ss_dssp             EECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTT--TTCTTCCEEECTTCEEGGGEECSC-CT----------
T ss_pred             EECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhc--ccCcCCCEEECCCCccccccchhH-Hh----------
Confidence            6666666655543 455666666666666666665554433  455666666666666654 22211 00          


Q ss_pred             CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113          704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL  783 (887)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  783 (887)
                                                               -++.|+.|++++|.+++..|..++.+++|++|+|++|++
T Consensus       173 -----------------------------------------~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l  211 (306)
T 2z66_A          173 -----------------------------------------ELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF  211 (306)
T ss_dssp             -----------------------------------------TCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred             -----------------------------------------hCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCcc
Confidence                                                     034566777777777766677777777777777777777


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccccCCccccCC-CCCCeeecccCccccc
Q 040113          784 QGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVEL-TFLEFFNVSDNYLTGP  834 (887)
Q Consensus       784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L-~~L~~L~ls~N~l~g~  834 (887)
                      ++..+..+..+++|+.|||++|++++.+|..+..+ ++|++|++++|++++.
T Consensus       212 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~  263 (306)
T 2z66_A          212 FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT  263 (306)
T ss_dssp             SBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECS
T ss_pred             CccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecc
Confidence            76666667777777777777777777777777776 3777777777777754

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.94  E-value=4.1e-26  Score=246.07  Aligned_cols=271  Identities=24%  Similarity=0.318  Sum_probs=216.4

Q ss_pred             CCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCcccccc----cCCcccccCCCCCeEECCCCCCCCCCCCccccC
Q 040113           75 KAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSI----NSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIIN  150 (887)
Q Consensus        75 ~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~----~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~  150 (887)
                      ++..|... -..++|.|.++.|......     -..+...|..    +....-....++++|+|++|.+.  .+|..+++
T Consensus        31 aLl~~k~~-~~~~~~~~~~~w~~~~~~~-----~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~--~lp~~l~~  102 (328)
T 4fcg_A           31 VLSQWQRH-YNADRNRWHSAWRQANSNN-----PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP--QFPDQAFR  102 (328)
T ss_dssp             HHHHHHHH-HHHCCTTHHHHHHHHTTTC-----TTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS--SCCSCGGG
T ss_pred             HHHHHHHh-ccCCchhhhhhhccccccc-----ccccccCCcchhhhHHHHhcccccceeEEEccCCCch--hcChhhhh
Confidence            45567531 0247899999888432110     0112222211    00001123467888888888887  37777888


Q ss_pred             CCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCC
Q 040113          151 LSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLS  230 (887)
Q Consensus       151 l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~  230 (887)
                      +++|++|+|++|.+. .+|..++++++|++|++++|.                              +. .+|..++.++
T Consensus       103 l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~------------------------------l~-~lp~~l~~l~  150 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNP------------------------------LR-ALPASIASLN  150 (328)
T ss_dssp             GTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCC------------------------------CC-CCCGGGGGCT
T ss_pred             CCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCc------------------------------cc-cCcHHHhcCc
Confidence            888888888888876 677777767666666666664                              44 4577788999


Q ss_pred             CCCEEEcccCCCCCccccccCC---------CCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCC
Q 040113          231 SLTFLSLHSCGLQGRIQSSLGN---------LSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNL  301 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~l~~---------l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l  301 (887)
                      +|++|++++|.+.+.+|..+..         +++|++|++++|.++ .+|..++++++|++|++++|.+++ +|..++.+
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l  228 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHL  228 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGC
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccC
Confidence            9999999999988888887654         999999999999998 888999999999999999999995 66679999


Q ss_pred             CCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEE
Q 040113          302 VSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL  381 (887)
Q Consensus       302 ~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L  381 (887)
                      ++|++|++++|.+.+.+|..  ++.+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..++.+++|+.+
T Consensus       229 ~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l  306 (328)
T 4fcg_A          229 PKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCII  306 (328)
T ss_dssp             TTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEE
T ss_pred             CCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEE
Confidence            99999999999999999987  8999999999999999999999999999999999999999999999999999999999


Q ss_pred             EcCCCCCc
Q 040113          382 DLSQNSYR  389 (887)
Q Consensus       382 ~L~~n~l~  389 (887)
                      ++..+.+.
T Consensus       307 ~l~~~~~~  314 (328)
T 4fcg_A          307 LVPPHLQA  314 (328)
T ss_dssp             ECCGGGSC
T ss_pred             eCCHHHHH
Confidence            99977654

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=252.63  Aligned_cols=247  Identities=22%  Similarity=0.204  Sum_probs=211.5

Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF  586 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~  586 (887)
                      .++.++..++..+...+..++.+++++|++.+..+..|.++++|++|+|++|.+++..+..|.+++ +|++|+|++|+++
T Consensus        47 ~v~c~~~~l~~iP~~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~-~L~~L~L~~n~l~  125 (440)
T 3zyj_A           47 KVICVRKNLREVPDGISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLA-NLNTLELFDNRLT  125 (440)
T ss_dssp             EEECCSCCCSSCCSCCCTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCS-SCCEEECCSSCCS
T ss_pred             EEEeCCCCcCcCCCCCCCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCc-cCCEEECCCCcCC
Confidence            444455555444444456777788888888888888899999999999999999988888999998 7999999999999


Q ss_pred             ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113          587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR  665 (887)
Q Consensus       587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  665 (887)
                      +..+..|..+++|++|++++|++++..+..|.++++|++|++++ |.+....+..|..+++|++|++++|+++... .  
T Consensus       126 ~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~-~--  202 (440)
T 3zyj_A          126 TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREIP-N--  202 (440)
T ss_dssp             SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSSCC-C--
T ss_pred             eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcccc-c--
Confidence            88888899999999999999999988888999999999999999 4566666668999999999999999998653 2  


Q ss_pred             cccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccccccc
Q 040113          666 IDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV  745 (887)
Q Consensus       666 ~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (887)
                       ...+++|+.|++++|++++..|.. |..                                                   
T Consensus       203 -~~~l~~L~~L~Ls~N~l~~~~~~~-~~~---------------------------------------------------  229 (440)
T 3zyj_A          203 -LTPLIKLDELDLSGNHLSAIRPGS-FQG---------------------------------------------------  229 (440)
T ss_dssp             -CTTCSSCCEEECTTSCCCEECTTT-TTT---------------------------------------------------
T ss_pred             -cCCCcccCEEECCCCccCccChhh-hcc---------------------------------------------------
Confidence             367899999999999998654532 211                                                   


Q ss_pred             CCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113          746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ  810 (887)
Q Consensus       746 ~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~  810 (887)
                      .+.|+.|+|++|++++..+..|.++++|+.|+|++|++++..+..|..+++|+.|+|++|++...
T Consensus       230 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~Cd  294 (440)
T 3zyj_A          230 LMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCN  294 (440)
T ss_dssp             CTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECS
T ss_pred             CccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCC
Confidence            45789999999999999999999999999999999999998888999999999999999998754

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=7.2e-28  Score=258.41  Aligned_cols=246  Identities=21%  Similarity=0.206  Sum_probs=175.2

Q ss_pred             cEEEccCccccccCChhhhCcCCCCeEEcCCCccC-CCCCCccc-------ccCCcceEEecCCCcccccCCccc--cCC
Q 040113          527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS-GLLPRCLG-------SFSDKLSILDLRANNFFGTIPNTF--MKE  596 (887)
Q Consensus       527 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~p~~l~-------~l~~~L~~L~L~~N~l~~~~~~~~--~~l  596 (887)
                      +.+++++|.+  .+|..+...  |+.|++++|.+. ..+|..+.       +++ +|++|++++|++++.+|..+  ..+
T Consensus        46 ~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~~~l  120 (312)
T 1wwl_A           46 EYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGIS-GLQELTLENLEVTGTAPPPLLEATG  120 (312)
T ss_dssp             TTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTS-CCCEEEEEEEBCBSCCCCCSSSCCS
T ss_pred             eeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcC-CccEEEccCCcccchhHHHHHHhcC
Confidence            3344444444  445544433  677777777763 34454443       455 57777777777777777665  677


Q ss_pred             CcccEEEccCCeeeeeCCccccCC-----CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccC--CCCccccC
Q 040113          597 SRLGMIDLSHNLFQGRIPRSLINC-----SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII--REPRIDCG  669 (887)
Q Consensus       597 ~~L~~L~Ls~N~l~~~~~~~l~~l-----~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~~~~~  669 (887)
                      ++|++|++++|++++. |..+..+     ++|++|++++|++.+..|..|+.+++|++|++++|++.+.+  +....+..
T Consensus       121 ~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~  199 (312)
T 1wwl_A          121 PDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLK  199 (312)
T ss_dssp             CCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTS
T ss_pred             CCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhcc
Confidence            7778888888877766 6666665     78888888888888877778888888888888888876542  22222356


Q ss_pred             CCCCCEEEcCCCcCcc--cCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCC
Q 040113          670 FSKLRIIDLSNNRFTG--KLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPD  747 (887)
Q Consensus       670 l~~L~~L~Ls~N~l~~--~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  747 (887)
                      +++|++|++++|++++  .++...+..                                                   .+
T Consensus       200 l~~L~~L~L~~N~l~~~~~~~~~~~~~---------------------------------------------------l~  228 (312)
T 1wwl_A          200 FPTLQVLALRNAGMETPSGVCSALAAA---------------------------------------------------RV  228 (312)
T ss_dssp             CTTCCEEECTTSCCCCHHHHHHHHHHT---------------------------------------------------TC
T ss_pred             CCCCCEEECCCCcCcchHHHHHHHHhc---------------------------------------------------CC
Confidence            7888888888888762  122111111                                                   35


Q ss_pred             ceeEEEeecCcCCccCh-hhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113          748 ILTSIILSSNRFDGMIP-TSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV  826 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip-~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l  826 (887)
                      .|+.|+|++|++++.+| ..+..+++|++|+|++|+++ .+|..+.  ++|++|||++|++++. |. +..+++|++|++
T Consensus       229 ~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L  303 (312)
T 1wwl_A          229 QLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSL  303 (312)
T ss_dssp             CCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEEC
T ss_pred             CCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEec
Confidence            68889999999988775 45667889999999999998 7787776  8899999999999876 65 888999999999


Q ss_pred             ccCccccc
Q 040113          827 SDNYLTGP  834 (887)
Q Consensus       827 s~N~l~g~  834 (887)
                      ++|+++++
T Consensus       304 ~~N~l~~~  311 (312)
T 1wwl_A          304 KGNPFLDS  311 (312)
T ss_dssp             TTCTTTCC
T ss_pred             cCCCCCCC
Confidence            99998863

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=5.1e-26  Score=240.92  Aligned_cols=228  Identities=21%  Similarity=0.253  Sum_probs=153.0

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      +.++.+++.++ .+|..+   +++|++|++++|++++..+..|..+++|++|++++|.+++..|..|.++++|++|++++
T Consensus        14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~   89 (285)
T 1ozn_A           14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD   89 (285)
T ss_dssp             CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence            45666666665 344433   22577777777777766666677777777777777777766666777777777777777


Q ss_pred             Cc-CCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccc
Q 040113          631 NQ-IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL  709 (887)
Q Consensus       631 N~-l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~  709 (887)
                      |+ +....|..+..+++|++|++++|++.+..+..+  .++++|++|++++|++++ +|...+..               
T Consensus        90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~---------------  151 (285)
T 1ozn_A           90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQA-LPDDTFRD---------------  151 (285)
T ss_dssp             CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCC-CCTTTTTT---------------
T ss_pred             CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHh--hCCcCCCEEECCCCcccc-cCHhHhcc---------------
Confidence            75 666666667777777777777777766655444  556777777777777663 33221111               


Q ss_pred             ccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCc
Q 040113          710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS  789 (887)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~  789 (887)
                                                          .+.|+.|++++|++++..+..+..+++|++|+|++|.+++..|.
T Consensus       152 ------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  195 (285)
T 1ozn_A          152 ------------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH  195 (285)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTT
T ss_pred             ------------------------------------CCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHh
Confidence                                                34567777777777766666677777777777777777777777


Q ss_pred             cccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCC
Q 040113          790 CLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP  836 (887)
Q Consensus       790 ~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP  836 (887)
                      .|+++++|+.|++++|++++..+..+..+++|++|++++|++.+..+
T Consensus       196 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~  242 (285)
T 1ozn_A          196 AFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             HccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCC
Confidence            77777777777777777777666667777777777777777765433

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.94  E-value=4.2e-26  Score=244.36  Aligned_cols=255  Identities=25%  Similarity=0.287  Sum_probs=149.4

Q ss_pred             CccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCc-cccCCCCCCEEECCCCCCCc
Q 040113           88 CCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPS-EIINLSRLSYLNLSHSSFFG  166 (887)
Q Consensus        88 ~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~-~~~~l~~L~~L~Ls~n~~~~  166 (887)
                      .|.|++|.|+..            .+. .++.  .+  .++|++|+|++|.++.  +|. .|+++++|++|++++|.+..
T Consensus         6 ~C~~~~l~c~~~------------~l~-~ip~--~~--~~~l~~L~L~~n~l~~--i~~~~~~~l~~L~~L~L~~n~l~~   66 (306)
T 2z66_A            6 SCSGTEIRCNSK------------GLT-SVPT--GI--PSSATRLELESNKLQS--LPHGVFDKLTQLTKLSLSSNGLSF   66 (306)
T ss_dssp             EEETTEEECCSS------------CCS-SCCS--CC--CTTCCEEECCSSCCCC--CCTTTTTTCTTCSEEECCSSCCCE
T ss_pred             eeCCCEEEcCCC------------Ccc-cCCC--CC--CCCCCEEECCCCccCc--cCHhHhhccccCCEEECCCCccCc
Confidence            389999998643            222 2221  22  2578888888888874  444 36788888888888887752


Q ss_pred             --cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCC
Q 040113          167 --QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQG  244 (887)
Q Consensus       167 --~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~  244 (887)
                        ..|..+..+++|++|++++|.+..       ++..+..+++|++|++++|.+.+..+                     
T Consensus        67 ~~~~~~~~~~~~~L~~L~Ls~n~i~~-------l~~~~~~l~~L~~L~l~~n~l~~~~~---------------------  118 (306)
T 2z66_A           67 KGCCSQSDFGTTSLKYLDLSFNGVIT-------MSSNFLGLEQLEHLDFQHSNLKQMSE---------------------  118 (306)
T ss_dssp             EEEEEHHHHSCSCCCEEECCSCSEEE-------EEEEEETCTTCCEEECTTSEEESSTT---------------------
T ss_pred             ccCcccccccccccCEEECCCCcccc-------ChhhcCCCCCCCEEECCCCccccccc---------------------
Confidence              235555666667777776665221       22234444444455444444443322                     


Q ss_pred             ccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCC-ccchhhhCCCCCCEEEccCCcCCCCCCchhh
Q 040113          245 RIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSG-ELPTSIQNLVSLEELDLSFNKLSGEFPWSIV  323 (887)
Q Consensus       245 ~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~-~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~  323 (887)
                        ...+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|++++..|..  
T Consensus       119 --~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--  194 (306)
T 2z66_A          119 --FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--  194 (306)
T ss_dssp             --TTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--
T ss_pred             --chhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH--
Confidence              0344555555555555555554445555555555555555555544 34555555566666666666655444444  


Q ss_pred             ccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCC-CCCEEEcCCCCCccccc
Q 040113          324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLT-QLITLDLSQNSYRGTME  393 (887)
Q Consensus       324 ~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~  393 (887)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++ +|++|++++|.+.+...
T Consensus       195 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~  265 (306)
T 2z66_A          195 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCE  265 (306)
T ss_dssp             TTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGG
T ss_pred             hcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccC
Confidence            55566666666666666655555566666677777777776666666666663 77777777777766544

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.93  E-value=1e-25  Score=238.54  Aligned_cols=235  Identities=23%  Similarity=0.303  Sum_probs=169.6

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCe-eeeeCCccccCCCCCcEE
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL-FQGRIPRSLINCSKLEFL  626 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L  626 (887)
                      ++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|. +....|..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCC-CCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence            4667777777777666556666666 57777777777776666677777777777777775 665556677777777777


Q ss_pred             eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCc
Q 040113          627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL  706 (887)
Q Consensus       627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~  706 (887)
                      ++++|++++..+..+..+++|++|++++|++.+..+..+  ..+++|+.|++++|++++ +|...+..            
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~-~~~~~~~~------------  175 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRG------------  175 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCE-ECTTTTTT------------
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHh--ccCCCccEEECCCCcccc-cCHHHhcC------------
Confidence            777777777767777777777777777777776554433  567777788888777763 33221111            


Q ss_pred             cccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccccc
Q 040113          707 KYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH  786 (887)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  786 (887)
                                                             .+.|+.|++++|.+++..|..++.+++|+.|++++|.+++.
T Consensus       176 ---------------------------------------l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  216 (285)
T 1ozn_A          176 ---------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (285)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ---------------------------------------ccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcC
Confidence                                                   35678888888888888888888899999999999999987


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113          787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG  838 (887)
Q Consensus       787 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~  838 (887)
                      .+..+..+++|+.|+|++|++.+..+.. .-...++.+..+.+.+.+..|..
T Consensus       217 ~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~  267 (285)
T 1ozn_A          217 PTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR  267 (285)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred             CHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence            7777888999999999999988765432 12234566667888888888864

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=9e-28  Score=282.75  Aligned_cols=381  Identities=17%  Similarity=0.114  Sum_probs=257.1

Q ss_pred             CcEEEEEcCCCcccccccCCccccc-CC-CCCeEECCCCC-CCCCCCCccccCCCCCCEEECCCCCCCcc----CCcccc
Q 040113          101 GHVMKLDLSNSCLYGSINSSSSLFK-LV-HLEWLNLAFND-FKSSEIPSEIINLSRLSYLNLSHSSFFGQ----IPSEIL  173 (887)
Q Consensus       101 ~~v~~L~L~~~~l~~~~~~~~~l~~-l~-~L~~L~L~~n~-~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~----~p~~l~  173 (887)
                      .++++|+|+++.+.+....  .+.+ ++ +|++|+|++|. ++...++..+..+++|++|+|++|.+.+.    ++..+.
T Consensus       112 ~~L~~L~L~~~~i~~~~~~--~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          112 RQLKSVHFRRMIVSDLDLD--RLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             TTCCEEEEESCBCCHHHHH--HHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             CCCCeEEeeccEecHHHHH--HHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4678888888877654332  4444 33 48888888776 22111233344788888888888877655    444456


Q ss_pred             CCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCC---Ccccccc
Q 040113          174 ELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ---GRIQSSL  250 (887)
Q Consensus       174 ~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~---~~~~~~l  250 (887)
                      .+++|++|++++|.+..+  ....++..+..+++|++|++++|.+.+ ++..+..+++|++|+++++...   +..+..+
T Consensus       190 ~~~~L~~L~L~~n~~~~~--~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l  266 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKI--SPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNL  266 (592)
T ss_dssp             HCCCCCEEECTTCCCSSC--CHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCC
T ss_pred             cCCCccEEEeeccCCCcc--CHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccccchHHHHHHh
Confidence            788888888888874322  123556677788888888888887775 5677888888888888764332   2344566


Q ss_pred             CCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccc-hhhhCCCCCCEEEccCCcCCC-CCCchhhccCCC
Q 040113          251 GNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELP-TSIQNLVSLEELDLSFNKLSG-EFPWSIVIGNFT  328 (887)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~l~~-~~~~~~~~~~l~  328 (887)
                      ..+++|+.|+++++. .+.+|..+..+++|++|++++|.+++... ..+..+++|++|+++ +.+.. .++.  ....++
T Consensus       267 ~~~~~L~~L~l~~~~-~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~~~l~~--~~~~~~  342 (592)
T 3ogk_B          267 VFPRKLCRLGLSYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGDRGLEV--LAQYCK  342 (592)
T ss_dssp             CCCTTCCEEEETTCC-TTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHHHHHHH--HHHHCT
T ss_pred             hccccccccCccccc-hhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCHHHHHH--HHHhCC
Confidence            778888888888753 34677777888889999999888765443 346788899999888 33332 2222  245678


Q ss_pred             CccEEEccC-----------CCCCCcc-ccccCCCCCccEEEccCCcCCccCCccccC-CCCCCEEEcC----CCCCccc
Q 040113          329 QLQSLDFTS-----------NKFSGEL-HASIGNLRSLEVLAIGRCNFSGRIPSSLRN-LTQLITLDLS----QNSYRGT  391 (887)
Q Consensus       329 ~L~~L~L~~-----------n~l~~~~-~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-l~~L~~L~L~----~n~l~~~  391 (887)
                      +|++|++++           +.+++.. +.....+++|++|+++.+.+++..+..+.. +++|++|+++    .|.+++.
T Consensus       343 ~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~  422 (592)
T 3ogk_B          343 QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDL  422 (592)
T ss_dssp             TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSC
T ss_pred             CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCc
Confidence            899999983           4555432 223445788999999888888766666654 8889999886    5566653


Q ss_pred             cc---hhhhhcCCCCCCEEEccCCc--ccccccccCCCCCCCeeEEeeCCCCCc--ccChhhhcCCcccEEecccCcccC
Q 040113          392 ME---LDFLLVSLKNLEVLSLSSNW--LSLLTKVTSNTTSQKFTVVGLRSCNLI--EFPNFLKNQHHLMLLDLSSNRIHG  464 (887)
Q Consensus       392 ~~---~~~~l~~l~~L~~L~L~~n~--i~~~~~~~~~~~~~~L~~l~l~~~~l~--~~~~~l~~~~~L~~L~Ls~n~l~~  464 (887)
                      ..   ....+..+++|+.|+++.|.  +...........+++|+.|++++|.+.  .++..+..+++|++|++++|.+++
T Consensus       423 p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~  502 (592)
T 3ogk_B          423 PLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSE  502 (592)
T ss_dssp             CCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBH
T ss_pred             hHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcH
Confidence            11   11235678889999987653  222221112224678888999888876  456667788889999999988765


Q ss_pred             CCCcc-ccccCCCCCcEEEccCCcccCcc
Q 040113          465 KIPSW-LLDPSTQNLSALNLSHNLLTGFD  492 (887)
Q Consensus       465 ~~p~~-~~~~~~~~L~~L~Ls~n~l~~~~  492 (887)
                      ....+ ...  +++|+.|++++|+++...
T Consensus       503 ~~~~~~~~~--l~~L~~L~ls~n~it~~~  529 (592)
T 3ogk_B          503 RAIAAAVTK--LPSLRYLWVQGYRASMTG  529 (592)
T ss_dssp             HHHHHHHHH--CSSCCEEEEESCBCCTTC
T ss_pred             HHHHHHHHh--cCccCeeECcCCcCCHHH
Confidence            43332 233  788899999998877654

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=6.2e-27  Score=251.11  Aligned_cols=248  Identities=24%  Similarity=0.236  Sum_probs=159.8

Q ss_pred             cCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC-CccCCcccc-------CCCCCcEEEccCCCCCCccccCC
Q 040113          125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF-FGQIPSEIL-------ELVNLVSLDLSLNSGYGLELQKP  196 (887)
Q Consensus       125 ~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~-~~~~p~~l~-------~l~~L~~L~l~~n~~~~l~~~~~  196 (887)
                      ..++|++|++++|.+   .+|..+...  |++|+|++|.+ ...+|..+.       ++++|++|++++|.+.+      
T Consensus        41 ~~~~L~~l~l~~n~l---~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~------  109 (312)
T 1wwl_A           41 GGRSLEYLLKRVDTE---ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTG------  109 (312)
T ss_dssp             EEEECTTHHHHCCTT---CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBS------
T ss_pred             cCCCceeEeeccccc---ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccc------
Confidence            344566666666666   255544433  66666666665 334555444       56666666666665321      


Q ss_pred             ChHHHh--hcCCCCCEEEccCCCCCCCchhhhcCC-----CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCc
Q 040113          197 NFANLV--EKLSNLETLDLGYVSIRSTIPHNLANL-----SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE  269 (887)
Q Consensus       197 ~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~l~~l-----~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  269 (887)
                      .+|..+  ..+++|++|++++|.+.+. |..++.+     ++|++|++++|.+.+..+..++.+++|++|++++|++.+.
T Consensus       110 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          110 TAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             CCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             hhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence            122222  5566666666666666665 5555554     7777777777777776667777777788888887777654


Q ss_pred             --chhhc--cCCCCCCEEEccCCCCCC--ccc-hhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113          270 --LPVSI--GNLHSLKKLDLSINNLSG--ELP-TSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       270 --~p~~l--~~l~~L~~L~L~~n~l~~--~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  342 (887)
                        .+..+  +.+++|++|++++|.+++  .++ ..+..+++|++|++++|++++..|.. .+..+++|++|++++|.++ 
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~-~~~~l~~L~~L~Ls~N~l~-  266 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAP-SCDWPSQLNSLNLSFTGLK-  266 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCS-CCCCCTTCCEEECTTSCCS-
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchh-hhhhcCCCCEEECCCCccC-
Confidence              23344  677788888888887773  122 33456778888888888877655322 1455677888888888877 


Q ss_pred             ccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCcc
Q 040113          343 ELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG  390 (887)
Q Consensus       343 ~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~  390 (887)
                      .+|..+.  ++|++|++++|++++. |. +..+++|++|++++|++++
T Consensus       267 ~ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~  310 (312)
T 1wwl_A          267 QVPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLD  310 (312)
T ss_dssp             SCCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTC
T ss_pred             hhhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCC
Confidence            5666555  7778888888877755 44 7777777777777777654

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=2.7e-24  Score=249.24  Aligned_cols=262  Identities=26%  Similarity=0.299  Sum_probs=167.3

Q ss_pred             cccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCccccccEEeCCCcccccCCCCCCCCCcEEE
Q 040113          451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL  530 (887)
Q Consensus       451 ~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~l~~l~  530 (887)
                      +++.|++++|.++ .+|..+    .++|+.|++++|.++.++.       ..+.|++|++++|++++             
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l----~~~L~~L~L~~N~l~~lp~-------~l~~L~~L~Ls~N~l~~-------------   95 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCL----PAHITTLVIPDNNLTSLPA-------LPPELRTLEVSGNQLTS-------------   95 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCC----CTTCSEEEECSCCCSCCCC-------CCTTCCEEEECSCCCSC-------------
T ss_pred             CCcEEEecCCCcC-ccChhh----CCCCcEEEecCCCCCCCCC-------cCCCCCEEEcCCCcCCc-------------
Confidence            5788888888887 566654    3578888888887776554       12346666666666543             


Q ss_pred             ccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeee
Q 040113          531 VSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQ  610 (887)
Q Consensus       531 l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~  610 (887)
                               +|.   .+++|++|++++|.+++ +|.   .+. +|+.|++++|++++. |..   +++|++|++++|+++
T Consensus        96 ---------lp~---~l~~L~~L~Ls~N~l~~-l~~---~l~-~L~~L~L~~N~l~~l-p~~---l~~L~~L~Ls~N~l~  154 (622)
T 3g06_A           96 ---------LPV---LPPGLLELSIFSNPLTH-LPA---LPS-GLCKLWIFGNQLTSL-PVL---PPGLQELSVSDNQLA  154 (622)
T ss_dssp             ---------CCC---CCTTCCEEEECSCCCCC-CCC---CCT-TCCEEECCSSCCSCC-CCC---CTTCCEEECCSSCCS
T ss_pred             ---------CCC---CCCCCCEEECcCCcCCC-CCC---CCC-CcCEEECCCCCCCcC-CCC---CCCCCEEECcCCcCC
Confidence                     332   35666777777776664 333   222 577777777776653 322   366777777777766


Q ss_pred             eeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChh
Q 040113          611 GRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK  690 (887)
Q Consensus       611 ~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~  690 (887)
                      +. |.   ..++|+.|++++|+++++ |   ..+++|+.|++++|++++...      .+++|+.|++++|.++ .+|..
T Consensus       155 ~l-~~---~~~~L~~L~L~~N~l~~l-~---~~~~~L~~L~Ls~N~l~~l~~------~~~~L~~L~L~~N~l~-~l~~~  219 (622)
T 3g06_A          155 SL-PA---LPSELCKLWAYNNQLTSL-P---MLPSGLQELSVSDNQLASLPT------LPSELYKLWAYNNRLT-SLPAL  219 (622)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSCCCC------CCTTCCEEECCSSCCS-SCCCC
T ss_pred             Cc-CC---ccCCCCEEECCCCCCCCC-c---ccCCCCcEEECCCCCCCCCCC------ccchhhEEECcCCccc-ccCCC
Confidence            43 32   235677777777777664 3   345677777777777665321      2356777777777665 33311


Q ss_pred             hhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc
Q 040113          691 SFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL  770 (887)
Q Consensus       691 ~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l  770 (887)
                                                                             +++|+.|+|++|.|++ +|   ..+
T Consensus       220 -------------------------------------------------------~~~L~~L~Ls~N~L~~-lp---~~l  240 (622)
T 3g06_A          220 -------------------------------------------------------PSGLKELIVSGNRLTS-LP---VLP  240 (622)
T ss_dssp             -------------------------------------------------------CTTCCEEECCSSCCSC-CC---CCC
T ss_pred             -------------------------------------------------------CCCCCEEEccCCccCc-CC---CCC
Confidence                                                                   3457777777777775 44   445


Q ss_pred             cCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113          771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       771 ~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      ++|+.|+|++|.++ .+|.   .+++|+.|+|++|+++ .+|..+.++++|++|++++|+++|.+|.
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~  302 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQ  302 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHH
T ss_pred             CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHH
Confidence            67777777777777 4554   4567777777777777 5677777777777777777777776664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.92  E-value=1e-25  Score=242.22  Aligned_cols=266  Identities=21%  Similarity=0.170  Sum_probs=184.5

Q ss_pred             ccEEeCCCcccccCC---CCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecC
Q 040113          505 LLTLDLSSNNLQGPL---PVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLR  581 (887)
Q Consensus       505 L~~L~ls~n~l~~~~---~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~  581 (887)
                      ++..+++.+.+...+   ....++++++++++|++.+..|..+..+++|++|++++|.+++..+  +..++ +|++|+++
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~-~L~~L~Ls   88 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLN   88 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCT-TCCEEECC
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcC-CCCEEECc
Confidence            555666666654322   1224467777777777777666677777777777777777765444  66666 57777777


Q ss_pred             CCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 040113          582 ANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII  661 (887)
Q Consensus       582 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  661 (887)
                      +|++++..     ..++|++|++++|++++..+..   +++|++|++++|++++..+..+..+++|++|++++|++.+..
T Consensus        89 ~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           89 NNYVQELL-----VGPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             SSEEEEEE-----ECTTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEE
T ss_pred             CCcccccc-----CCCCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCccc
Confidence            77776443     2366777777777777655433   456777777777777776666777777777777777776654


Q ss_pred             CCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccc
Q 040113          662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMT  741 (887)
Q Consensus       662 ~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (887)
                      +..+ ...+++|++|++++|++++. |..                                                   
T Consensus       161 ~~~~-~~~l~~L~~L~L~~N~l~~~-~~~---------------------------------------------------  187 (317)
T 3o53_A          161 FAEL-AASSDTLEHLNLQYNFIYDV-KGQ---------------------------------------------------  187 (317)
T ss_dssp             GGGG-GGGTTTCCEEECTTSCCCEE-ECC---------------------------------------------------
T ss_pred             HHHH-hhccCcCCEEECCCCcCccc-ccc---------------------------------------------------
Confidence            4332 12456777777777776522 110                                                   


Q ss_pred             ccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc-ccCCccccCCCC
Q 040113          742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL-GQIPQQLVELTF  820 (887)
Q Consensus       742 ~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~L~~  820 (887)
                        ..++.|+.|+|++|++++.. ..+..+++|++|+|++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.
T Consensus       188 --~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~  263 (317)
T 3o53_A          188 --VVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQR  263 (317)
T ss_dssp             --CCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHH
T ss_pred             --cccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhcccc
Confidence              01467889999999998654 45888999999999999998 46778888999999999999998 778888888999


Q ss_pred             CCeeecc-cCcccccCCCC
Q 040113          821 LEFFNVS-DNYLTGPIPQG  838 (887)
Q Consensus       821 L~~L~ls-~N~l~g~iP~~  838 (887)
                      |++++++ .+.++|..|..
T Consensus       264 L~~l~l~~~~~l~~~~~~~  282 (317)
T 3o53_A          264 VQTVAKQTVKKLTGQNEEE  282 (317)
T ss_dssp             HHHHHHHHHHHHHSSSSCC
T ss_pred             ceEEECCCchhccCCchhc
Confidence            9999988 45677776643

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.92  E-value=9.7e-24  Score=244.62  Aligned_cols=269  Identities=27%  Similarity=0.348  Sum_probs=211.4

Q ss_pred             CCeeEEeeCCCCCcccChhhhcCCcccEEecccCcccCCCCccccccCCCCCcEEEccCCcccCccccccccCCcccccc
Q 040113          427 QKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLL  506 (887)
Q Consensus       427 ~~L~~l~l~~~~l~~~~~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~  506 (887)
                      ..++.++++++.+..+|..+.  ++|+.|++++|.++ .+|.     .+++|++|++++|+++.++.       ..+.|+
T Consensus        40 ~~l~~L~ls~n~L~~lp~~l~--~~L~~L~L~~N~l~-~lp~-----~l~~L~~L~Ls~N~l~~lp~-------~l~~L~  104 (622)
T 3g06_A           40 NGNAVLNVGESGLTTLPDCLP--AHITTLVIPDNNLT-SLPA-----LPPELRTLEVSGNQLTSLPV-------LPPGLL  104 (622)
T ss_dssp             HCCCEEECCSSCCSCCCSCCC--TTCSEEEECSCCCS-CCCC-----CCTTCCEEEECSCCCSCCCC-------CCTTCC
T ss_pred             CCCcEEEecCCCcCccChhhC--CCCcEEEecCCCCC-CCCC-----cCCCCCEEEcCCCcCCcCCC-------CCCCCC
Confidence            358999999999999998775  89999999999998 4555     27899999999999997665       234577


Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCccc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFF  586 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~  586 (887)
                      +|++++|.+++.                      |.   .+++|+.|++++|++++ +|..+   + +|++|++++|+++
T Consensus       105 ~L~Ls~N~l~~l----------------------~~---~l~~L~~L~L~~N~l~~-lp~~l---~-~L~~L~Ls~N~l~  154 (622)
T 3g06_A          105 ELSIFSNPLTHL----------------------PA---LPSGLCKLWIFGNQLTS-LPVLP---P-GLQELSVSDNQLA  154 (622)
T ss_dssp             EEEECSCCCCCC----------------------CC---CCTTCCEEECCSSCCSC-CCCCC---T-TCCEEECCSSCCS
T ss_pred             EEECcCCcCCCC----------------------CC---CCCCcCEEECCCCCCCc-CCCCC---C-CCCEEECcCCcCC
Confidence            888877776642                      22   35678888888888874 45432   3 6888888888887


Q ss_pred             ccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcc
Q 040113          587 GTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI  666 (887)
Q Consensus       587 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~  666 (887)
                      +. |.   .+.+|+.|++++|++++ +|   ..+++|+.|++++|+++++ |.   .+++|+.|++++|.++....    
T Consensus       155 ~l-~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~l-~~---~~~~L~~L~L~~N~l~~l~~----  218 (622)
T 3g06_A          155 SL-PA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLASL-PT---LPSELYKLWAYNNRLTSLPA----  218 (622)
T ss_dssp             CC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSCCC----
T ss_pred             Cc-CC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCCC-CC---ccchhhEEECcCCcccccCC----
Confidence            54 32   34678888888888885 44   4467899999999998875 33   24789999999998886431    


Q ss_pred             ccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccC
Q 040113          667 DCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVP  746 (887)
Q Consensus       667 ~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  746 (887)
                        .+++|+.|++++|++++ +|..                                                       +
T Consensus       219 --~~~~L~~L~Ls~N~L~~-lp~~-------------------------------------------------------l  240 (622)
T 3g06_A          219 --LPSGLKELIVSGNRLTS-LPVL-------------------------------------------------------P  240 (622)
T ss_dssp             --CCTTCCEEECCSSCCSC-CCCC-------------------------------------------------------C
T ss_pred             --CCCCCCEEEccCCccCc-CCCC-------------------------------------------------------C
Confidence              24789999999998874 4411                                                       4


Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT  819 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~  819 (887)
                      ++|+.|+|++|.|+ .+|.   .+++|+.|+|++|+++ .+|..++++++|+.|+|++|++++.+|..+..++
T Consensus       241 ~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~  308 (622)
T 3g06_A          241 SELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT  308 (622)
T ss_dssp             TTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred             CcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence            56899999999998 5665   6789999999999999 7799999999999999999999999999887765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=3.4e-25  Score=252.08  Aligned_cols=217  Identities=24%  Similarity=0.225  Sum_probs=134.0

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|+.|+|++|.+++..|..+..++ +|++|+|++|.+++..|  +..+++|++|++++|.+++..+     .++|++|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~-~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCT-TCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCC-CCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            3677777777777666666666666 57777777777666554  6666777777777777665432     26677777


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK  707 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~  707 (887)
                      +++|.+++..+.   .+++|+.|++++|.+++..+..+  ..+++|+.|++++|.+++.+|......             
T Consensus       106 L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~l~~~-------------  167 (487)
T 3oja_A          106 AANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDE--GCRSRVQYLDLKLNEIDTVNFAELAAS-------------  167 (487)
T ss_dssp             CCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCG--GGGSSEEEEECTTSCCCEEEGGGGGGG-------------
T ss_pred             CcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhh--cCCCCCCEEECCCCCCCCcChHHHhhh-------------
Confidence            777777666443   34667777777777766655444  456677777777777665544331111             


Q ss_pred             ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccC
Q 040113          708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHI  787 (887)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~  787 (887)
                                                            ++.|+.|+|++|.+++..+  +..+++|+.|+|++|.+++..
T Consensus       168 --------------------------------------l~~L~~L~Ls~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          168 --------------------------------------SDTLEHLNLQYNFIYDVKG--QVVFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             --------------------------------------TTTCCEEECTTSCCCEEEC--CCCCTTCCEEECCSSCCCEEC
T ss_pred             --------------------------------------CCcccEEecCCCccccccc--cccCCCCCEEECCCCCCCCCC
Confidence                                                  2446666666666665422  234666666666666666543


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113          788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT  832 (887)
Q Consensus       788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~  832 (887)
                      | .++.+++|+.|||++|++++ +|..+..+++|++|++++|++.
T Consensus       208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~  250 (487)
T 3oja_A          208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFH  250 (487)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBC
T ss_pred             H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCc
Confidence            3 36666666666666666664 4555666666666666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.2e-23  Score=219.49  Aligned_cols=227  Identities=21%  Similarity=0.192  Sum_probs=183.5

Q ss_pred             EEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCc
Q 040113          553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ  632 (887)
Q Consensus       553 L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~  632 (887)
                      ++..+..+. .+|..+.   .+|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++++|+
T Consensus        12 ~~c~~~~l~-~ip~~l~---~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~   87 (276)
T 2z62_A           12 YQCMELNFY-KIPDNLP---FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP   87 (276)
T ss_dssp             EECTTSCCS-SCCSSSC---TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred             EEecCCCcc-ccCCCCC---CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence            444454554 4555443   368888888888888877788888888888888888888777788888889999999998


Q ss_pred             CCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcc-cCChhhhhccccchhcccCCcccccc
Q 040113          633 IRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTG-KLPSKSFLCWNAMKIVNTSDLKYLQD  711 (887)
Q Consensus       633 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-~ip~~~~~~~~~l~~l~~~~~~~~~~  711 (887)
                      +++..+..|..+++|++|++++|++.+..+..+  ..+++|++|++++|++.+ .+|.. +..                 
T Consensus        88 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~l~~n~l~~~~l~~~-~~~-----------------  147 (276)
T 2z62_A           88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEY-FSN-----------------  147 (276)
T ss_dssp             CCEECTTTTTTCTTCCEEECTTSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGG-GGG-----------------
T ss_pred             cCccChhhhcCCccccEEECCCCCccccCchhc--ccCCCCCEEECcCCccceecCchh-hcc-----------------
Confidence            888888888888899999999998887765544  678899999999998875 24533 111                 


Q ss_pred             ccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCC----EEeCCCCcccccC
Q 040113          712 VISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ----VLNLDNNNLQGHI  787 (887)
Q Consensus       712 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~----~L~Ls~N~l~~~~  787 (887)
                                                        .+.|+.|++++|++++..+..+..+++|+    .|++++|.+++..
T Consensus       148 ----------------------------------l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~  193 (276)
T 2z62_A          148 ----------------------------------LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQ  193 (276)
T ss_dssp             ----------------------------------CTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEEC
T ss_pred             ----------------------------------CCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccC
Confidence                                              45689999999999988888888888887    8999999999777


Q ss_pred             CccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113          788 PSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG  838 (887)
Q Consensus       788 p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~  838 (887)
                      +..+.. .+|+.|+|++|++++..+..+..+++|++|++++|++++..|.-
T Consensus       194 ~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l  243 (276)
T 2z62_A          194 PGAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI  243 (276)
T ss_dssp             TTSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred             ccccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence            766654 58999999999999888878899999999999999999877754

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.91  E-value=1.7e-23  Score=219.37  Aligned_cols=216  Identities=27%  Similarity=0.274  Sum_probs=122.8

Q ss_pred             CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCC
Q 040113           86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFF  165 (887)
Q Consensus        86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~  165 (887)
                      .++|.|.|+.|.-. +.++.++++++.+.. ++.  .+.  +.+++|+|++|+++.. .+..|+++++|++|++++|.+.
T Consensus         2 ~~~C~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~--~~~--~~l~~L~l~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~   74 (270)
T 2o6q_A            2 EALCKKDGGVCSCN-NNKNSVDCSSKKLTA-IPS--NIP--ADTKKLDLQSNKLSSL-PSKAFHRLTKLRLLYLNDNKLQ   74 (270)
T ss_dssp             CCCBGGGTCSBEEE-TTTTEEECTTSCCSS-CCS--CCC--TTCSEEECCSSCCSCC-CTTSSSSCTTCCEEECCSSCCS
T ss_pred             CccCCCCCCCCEeC-CCCCEEEccCCCCCc-cCC--CCC--CCCCEEECcCCCCCee-CHHHhcCCCCCCEEECCCCccC
Confidence            47899999998643 346688898888774 332  232  5788888888888764 3456788888888888888876


Q ss_pred             ccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCc
Q 040113          166 GQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGR  245 (887)
Q Consensus       166 ~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~  245 (887)
                      +..+..+.++++|++|++++|.+..+.      +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.
T Consensus        75 ~i~~~~~~~l~~L~~L~l~~n~l~~~~------~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~  148 (270)
T 2o6q_A           75 TLPAGIFKELKNLETLWVTDNKLQALP------IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSL  148 (270)
T ss_dssp             CCCTTTTSSCTTCCEEECCSSCCCCCC------TTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             eeChhhhcCCCCCCEEECCCCcCCcCC------HhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCcc
Confidence            444444566777777777777643332      22344455555555555555544444444555555555555554443


Q ss_pred             cccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcC
Q 040113          246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       246 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l  314 (887)
                      .+..+..+++|++|++++|.+.+..+..|.++++|++|++++|.+++..+..+..+++|++|++++|++
T Consensus       149 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  217 (270)
T 2o6q_A          149 PKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPW  217 (270)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCB
T ss_pred             CHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCe
Confidence            333344444444554444444443333344444444444444444433333344444444444444443

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.91  E-value=5.6e-25  Score=250.24  Aligned_cols=236  Identities=22%  Similarity=0.172  Sum_probs=200.7

Q ss_pred             CCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEE
Q 040113          524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMID  603 (887)
Q Consensus       524 ~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  603 (887)
                      ++++.|++++|.+.+..|..|..+++|++|+|++|.+++..|  +..++ +|++|++++|++++..+     .++|+.|+
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~-~L~~L~Ls~N~l~~l~~-----~~~L~~L~  105 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLS-TLRTLDLNNNYVQELLV-----GPSIETLH  105 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCT-TCCEEECCSSEEEEEEE-----CTTCCEEE
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCC-CCCEEEecCCcCCCCCC-----CCCcCEEE
Confidence            356666666666777777889999999999999999987766  77887 79999999999986543     37999999


Q ss_pred             ccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113          604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF  683 (887)
Q Consensus       604 Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  683 (887)
                      +++|.+++..+..   +++|+.|++++|++++..|..++.+++|++|+|++|.+++..+..+ ...+++|+.|++++|.+
T Consensus       106 L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l-~~~l~~L~~L~Ls~N~l  181 (487)
T 3oja_A          106 AANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAEL-AASSDTLEHLNLQYNFI  181 (487)
T ss_dssp             CCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGG-GGGTTTCCEEECTTSCC
T ss_pred             CcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHH-hhhCCcccEEecCCCcc
Confidence            9999999876654   5789999999999999999999999999999999999999776654 13689999999999998


Q ss_pred             cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccC
Q 040113          684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMI  763 (887)
Q Consensus       684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~i  763 (887)
                      ++..+..                                                      .++.|+.|+|++|.+++..
T Consensus       182 ~~~~~~~------------------------------------------------------~l~~L~~L~Ls~N~l~~~~  207 (487)
T 3oja_A          182 YDVKGQV------------------------------------------------------VFAKLKTLDLSSNKLAFMG  207 (487)
T ss_dssp             CEEECCC------------------------------------------------------CCTTCCEEECCSSCCCEEC
T ss_pred             ccccccc------------------------------------------------------cCCCCCEEECCCCCCCCCC
Confidence            8541110                                                      1567999999999999765


Q ss_pred             hhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccc-ccCCccccCCCCCCeeecc
Q 040113          764 PTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL-GQIPQQLVELTFLEFFNVS  827 (887)
Q Consensus       764 p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~-~~~p~~l~~L~~L~~L~ls  827 (887)
                      | .++.+++|+.|+|++|.+++ +|..++.+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       208 ~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          208 P-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             G-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             H-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            5 49999999999999999996 7888999999999999999998 7788889999999999887

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.91  E-value=1.9e-25  Score=240.19  Aligned_cols=261  Identities=18%  Similarity=0.187  Sum_probs=163.3

Q ss_pred             cEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEE
Q 040113          102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSL  181 (887)
Q Consensus       102 ~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L  181 (887)
                      +++..+++.+.+......  .+..+++|++|+|++|.+++. .|..|+.+++|++|+|++|.+.+..|  +..+++|++|
T Consensus        11 ~l~i~~ls~~~l~~~~~~--~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L   85 (317)
T 3o53_A           11 RYKIEKVTDSSLKQALAS--LRQSAWNVKELDLSGNPLSQI-SAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTL   85 (317)
T ss_dssp             EEEEESCCTTTHHHHHHH--HHTTGGGCSEEECTTSCCCCC-CHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEE
T ss_pred             ceeEeeccccchhhhHHH--HhccCCCCCEEECcCCccCcC-CHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEE
Confidence            455666666666443322  344566788888888887764 45667778888888888887765443  6677777777


Q ss_pred             EccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeC
Q 040113          182 DLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL  261 (887)
Q Consensus       182 ~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  261 (887)
                      ++++|.+..+.           ..                        ++|++|++++|.+.+..+.   .+++|++|++
T Consensus        86 ~Ls~n~l~~l~-----------~~------------------------~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l  127 (317)
T 3o53_A           86 DLNNNYVQELL-----------VG------------------------PSIETLHAANNNISRVSCS---RGQGKKNIYL  127 (317)
T ss_dssp             ECCSSEEEEEE-----------EC------------------------TTCCEEECCSSCCSEEEEC---CCSSCEEEEC
T ss_pred             ECcCCcccccc-----------CC------------------------CCcCEEECCCCccCCcCcc---ccCCCCEEEC
Confidence            77777532211           12                        4555555555555543332   2455666666


Q ss_pred             cCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhh-hCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113          262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI-QNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF  340 (887)
Q Consensus       262 s~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  340 (887)
                      ++|.+++..+..++.+++|++|++++|.+++..+..+ ..+++|++|++++|.+++. +.   ...+++|++|++++|++
T Consensus       128 ~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~---~~~l~~L~~L~Ls~N~l  203 (317)
T 3o53_A          128 ANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-KG---QVVFAKLKTLDLSSNKL  203 (317)
T ss_dssp             CSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC---CCCCTTCCEEECCSSCC
T ss_pred             CCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc-cc---ccccccCCEEECCCCcC
Confidence            6666665555556666666666666666665555554 3566777777777766643 22   23466777777777777


Q ss_pred             CCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCC
Q 040113          341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSN  412 (887)
Q Consensus       341 ~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n  412 (887)
                      ++ +|..+..+++|++|++++|.++ .+|..+..+++|++|++++|.+....... .+..+++|+.++++++
T Consensus       204 ~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~-~~~~~~~L~~l~l~~~  272 (317)
T 3o53_A          204 AF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRD-FFSKNQRVQTVAKQTV  272 (317)
T ss_dssp             CE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHH-HHHTCHHHHHHHHHHH
T ss_pred             Cc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHH-HHhccccceEEECCCc
Confidence            64 3444667777777777777776 45666777777888888888776322222 3667777777777754

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=3.3e-27  Score=278.10  Aligned_cols=333  Identities=15%  Similarity=0.128  Sum_probs=198.7

Q ss_pred             CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCC-CC-CC------------ccccCC
Q 040113           86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKS-SE-IP------------SEIINL  151 (887)
Q Consensus        86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~-~~-lp------------~~~~~l  151 (887)
                      .-|++|.++..    ...+.+++..+....  + ...+.++++|++|+++++.... .. .|            .....+
T Consensus        32 ~vck~W~~~~~----~~~~~l~~~~~~~~~--~-~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~  104 (594)
T 2p1m_B           32 LVCKSWYEIER----WCRRKVFIGNCYAVS--P-ATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSY  104 (594)
T ss_dssp             TSCHHHHHHHH----HHCCEEEESSTTSSC--H-HHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHC
T ss_pred             HHHHHHHHhhh----hhceEEeeccccccC--H-HHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhC
Confidence            34568988832    234466666543221  1 1256788999999999876221 10 11            113467


Q ss_pred             CCCCEEECCCCCCCccCCcccc-CCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc---
Q 040113          152 SRLSYLNLSHSSFFGQIPSEIL-ELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA---  227 (887)
Q Consensus       152 ~~L~~L~Ls~n~~~~~~p~~l~-~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~---  227 (887)
                      ++|++|+|++|.+.+..+..+. .+++|++|++++|..  +  ....++..+..+++|++|++++|.+++..+..+.   
T Consensus       105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~--~--~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~  180 (594)
T 2p1m_B          105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEG--F--STDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFP  180 (594)
T ss_dssp             TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEE--E--EHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSC
T ss_pred             CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCC--C--CHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHh
Confidence            8899999999988777666675 688999999988831  1  1123556667888999999988887665544433   


Q ss_pred             -CCCCCCEEEcccCC--CCCc-cccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-------CCCccch
Q 040113          228 -NLSSLTFLSLHSCG--LQGR-IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-------LSGELPT  296 (887)
Q Consensus       228 -~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-------l~~~~~~  296 (887)
                       .+++|++|++++|.  +... ++..+..+++|++|++++|...+.++..+..+++|++|++..+.       +. .++.
T Consensus       181 ~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~  259 (594)
T 2p1m_B          181 DTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSV  259 (594)
T ss_dssp             TTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHH
T ss_pred             hcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHH
Confidence             56788888888876  2211 12223456888888888874333467777778888888866553       22 2444


Q ss_pred             hhhCCCCCCEE-EccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccc-cccCCCCCccEEEccCCcCCcc-CCcccc
Q 040113          297 SIQNLVSLEEL-DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELH-ASIGNLRSLEVLAIGRCNFSGR-IPSSLR  373 (887)
Q Consensus       297 ~l~~l~~L~~L-~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~l~~l~~L~~L~L~~n~i~~~-~~~~l~  373 (887)
                      .+.++++|+.| .+.+... +.++..  +..+++|++|++++|.+++... ..+..+++|++|++++| +... ++....
T Consensus       260 ~l~~~~~L~~Ls~~~~~~~-~~l~~~--~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~  335 (594)
T 2p1m_B          260 ALSGCKELRCLSGFWDAVP-AYLPAV--YSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLAS  335 (594)
T ss_dssp             HHHTCTTCCEEECCBTCCG-GGGGGG--HHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHH
T ss_pred             HHhcCCCcccccCCcccch-hhHHHH--HHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHH
Confidence            67778888887 3433222 223322  3456778888888777654332 23556777777777776 3322 222223


Q ss_pred             CCCCCCEEEcCC---------CCCccccchhhhhcCCCCCCEEEccCCcccccccccCCCCCCCeeEEeeCCCCCcccCh
Q 040113          374 NLTQLITLDLSQ---------NSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPN  444 (887)
Q Consensus       374 ~l~~L~~L~L~~---------n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~~~~~~~~L~~l~l~~~~l~~~~~  444 (887)
                      .+++|++|+++.         +.+++..... ....+++|+.|.+..+.++..+                       +..
T Consensus       336 ~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~-l~~~~~~L~~L~~~~~~l~~~~-----------------------~~~  391 (594)
T 2p1m_B          336 TCKDLRELRVFPSEPFVMEPNVALTEQGLVS-VSMGCPKLESVLYFCRQMTNAA-----------------------LIT  391 (594)
T ss_dssp             HCTTCCEEEEECSCTTCSSCSSCCCHHHHHH-HHHHCTTCCEEEEEESCCCHHH-----------------------HHH
T ss_pred             hCCCCCEEEEecCcccccccCCCCCHHHHHH-HHHhchhHHHHHHhcCCcCHHH-----------------------HHH
Confidence            467777777733         2333222111 1233566666655555332211                       112


Q ss_pred             hhhcCCcccEEecc
Q 040113          445 FLKNQHHLMLLDLS  458 (887)
Q Consensus       445 ~l~~~~~L~~L~Ls  458 (887)
                      ....+++|+.|+++
T Consensus       392 l~~~~~~L~~L~L~  405 (594)
T 2p1m_B          392 IARNRPNMTRFRLC  405 (594)
T ss_dssp             HHHHCTTCCEEEEE
T ss_pred             HHhhCCCcceeEee
Confidence            22357888999988

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=2.8e-26  Score=270.21  Aligned_cols=109  Identities=14%  Similarity=0.096  Sum_probs=56.5

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccc-cCCcceEEecCCCcccccCCccc-cCCCcccEEEccCCeeeeeCCc-cccCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGS-FSDKLSILDLRANNFFGTIPNTF-MKESRLGMIDLSHNLFQGRIPR-SLINC  620 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~-l~~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~Ls~N~l~~~~~~-~l~~l  620 (887)
                      +..+++|+.|++++ .+++..+..+.. ++ +|+.|++++|.+++.....+ ..+++|++|++++|.+++.... ....+
T Consensus       428 ~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~-~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l  505 (594)
T 2p1m_B          428 VEHCKDLRRLSLSG-LLTDKVFEYIGTYAK-KMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKL  505 (594)
T ss_dssp             HHHCTTCCEEECCS-SCCHHHHHHHHHHCT-TCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGG
T ss_pred             HhhCCCccEEeecC-cccHHHHHHHHHhch-hccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhC
Confidence            45566777777766 454444444443 33 56677776666654433333 4456666666666666433222 23345


Q ss_pred             CCCcEEeCCCCcCCCCCCccc-cCCCCCCEEEccC
Q 040113          621 SKLEFLDIGDNQIRDIFPSWL-GTLPNLTVLILQS  654 (887)
Q Consensus       621 ~~L~~L~L~~N~l~~~~~~~~-~~l~~L~~L~L~~  654 (887)
                      ++|++|++++|+++......+ ..+++|+...+..
T Consensus       506 ~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~  540 (594)
T 2p1m_B          506 ETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDE  540 (594)
T ss_dssp             GGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECS
T ss_pred             CCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecC
Confidence            666666666666533222222 2344444444443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.88  E-value=2.4e-22  Score=211.55  Aligned_cols=212  Identities=24%  Similarity=0.220  Sum_probs=168.4

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|++|++++|.+++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|.+++..+..|.++++|++|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFP-ELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCT-TCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhcccc-CCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            4688888888888877776777777 688888888888887777888888888888888888888888888888899999


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCccccc-CCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCc
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI-IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL  706 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~  706 (887)
                      +++|++.+..+..+..+++|++|++++|++.+. +|..+  ..+++|+.|++++|++++..+ ..+..+..         
T Consensus       107 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~--~~l~~L~~L~Ls~N~l~~~~~-~~~~~l~~---------  174 (276)
T 2z62_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYF--SNLTNLEHLDLSSNKIQSIYC-TDLRVLHQ---------  174 (276)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGG--GGCTTCCEEECCSSCCCEECG-GGGHHHHT---------
T ss_pred             CCCCCccccCchhcccCCCCCEEECcCCccceecCchhh--ccCCCCCEEECCCCCCCcCCH-HHhhhhhh---------
Confidence            999988888777788888999999999988764 34443  678899999999998874333 32322221         


Q ss_pred             cccccccCCccccccccccccccceeeeeccccccccccCCcee-EEEeecCcCCccChhhhhcccCCCEEeCCCCcccc
Q 040113          707 KYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILT-SIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG  785 (887)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~  785 (887)
                                                             .+.+. .|++++|.+++..+..+. ..+|++|+|++|++++
T Consensus       175 ---------------------------------------L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~  214 (276)
T 2z62_A          175 ---------------------------------------MPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKS  214 (276)
T ss_dssp             ---------------------------------------CTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSC
T ss_pred             ---------------------------------------ccccceeeecCCCcccccCccccC-CCcccEEECCCCceee
Confidence                                                   11222 799999999976665554 4589999999999998


Q ss_pred             cCCccccCCCCCCEEeCCCCcccccCC
Q 040113          786 HIPSCLGNLTNLESLDLSNNNFLGQIP  812 (887)
Q Consensus       786 ~~p~~l~~L~~L~~L~Ls~N~l~~~~p  812 (887)
                      ..+..|+++++|+.|+|++|++.+..|
T Consensus       215 ~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          215 VPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             CCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             cCHhHhcccccccEEEccCCcccccCC
Confidence            877888999999999999999997654

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.88  E-value=1.1e-21  Score=205.40  Aligned_cols=204  Identities=22%  Similarity=0.252  Sum_probs=134.6

Q ss_pred             CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      ..+.++++++.++ .+|..+.   .++++|++++|++++..+..|..+++|++|++++|+++...+..|.++++|++|++
T Consensus        17 ~~~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLT-AIPSNIP---ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCC-ccCCCCC---CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEEC
Confidence            4677888888877 4565443   25777777777777666667777777777777777777655556667777777777


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccc
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKY  708 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~  708 (887)
                      ++|++++..+..|..+++|++|++++|++++..+..+  ..++                                     
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~--~~l~-------------------------------------  133 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVF--DSLT-------------------------------------  133 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTT--TTCT-------------------------------------
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHh--CcCc-------------------------------------
Confidence            7777776666666666666666666666655433322  2333                                     


Q ss_pred             cccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC
Q 040113          709 LQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP  788 (887)
Q Consensus       709 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p  788 (887)
                                                             .|+.|+|++|.+++..+..++.+++|++|+|++|++++..+
T Consensus       134 ---------------------------------------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~  174 (270)
T 2o6q_A          134 ---------------------------------------KLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPE  174 (270)
T ss_dssp             ---------------------------------------TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT
T ss_pred             ---------------------------------------CCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeCh
Confidence                                                   45555555555554444456666677777777777776666


Q ss_pred             ccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccccc
Q 040113          789 SCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP  834 (887)
Q Consensus       789 ~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~  834 (887)
                      ..|.++++|++|+|++|++++..+..+..+++|++|++++|++.+.
T Consensus       175 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  220 (270)
T 2o6q_A          175 GAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCT  220 (270)
T ss_dssp             TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCS
T ss_pred             hHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCC
Confidence            6667777777777777777766666666777777777777776654

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.88  E-value=3.1e-22  Score=209.90  Aligned_cols=166  Identities=24%  Similarity=0.224  Sum_probs=98.7

Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus        81 l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~  160 (272)
T 3rfs_A           81 LKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLT  160 (272)
T ss_dssp             GTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCC
Confidence            34444555555555555555555555666666666666666655555556666666666666666655555556666666


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR  361 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  361 (887)
                      +|++++|.+++..+..++.+++|++|++++|++++..+..  ++.+++|+.|++++|.+.+       .+++|+.+++..
T Consensus       161 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~~~-------~~~~l~~l~~~~  231 (272)
T 3rfs_A          161 ELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWI  231 (272)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCBCC-------CTTTTHHHHHHH
T ss_pred             EEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCccc-------cCcHHHHHHHHH
Confidence            6666666666555555566666666666666666544433  5566666666666666543       244566666666


Q ss_pred             CcCCccCCccccCCC
Q 040113          362 CNFSGRIPSSLRNLT  376 (887)
Q Consensus       362 n~i~~~~~~~l~~l~  376 (887)
                      |.++|.+|.+++.+.
T Consensus       232 n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          232 NKHSGVVRNSAGSVA  246 (272)
T ss_dssp             HHTGGGBBCTTSCBC
T ss_pred             HhCCCcccCcccccC
Confidence            666666666655543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=2.2e-23  Score=226.50  Aligned_cols=268  Identities=21%  Similarity=0.195  Sum_probs=170.0

Q ss_pred             CCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccC--CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCC
Q 040113           86 IDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKL--VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS  163 (887)
Q Consensus        86 ~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l--~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~  163 (887)
                      .-|.+|.++.|+.  ..++.++++++.+...     .+.++  +++++|++++|.+.+. . ..+..+++|++|++++|.
T Consensus        34 ~vc~~W~~~~~~~--~~~~~l~l~~~~~~~~-----~~~~~~~~~l~~L~l~~n~l~~~-~-~~~~~~~~L~~L~L~~~~  104 (336)
T 2ast_B           34 GVCKRWYRLASDE--SLWQTLDLTGKNLHPD-----VTGRLLSQGVIAFRCPRSFMDQP-L-AEHFSPFRVQHMDLSNSV  104 (336)
T ss_dssp             SSCHHHHHHHTCS--TTSSEEECTTCBCCHH-----HHHHHHHTTCSEEECTTCEECSC-C-CSCCCCBCCCEEECTTCE
T ss_pred             HHHHHHHHHhcCc--hhheeeccccccCCHH-----HHHhhhhccceEEEcCCcccccc-c-hhhccCCCCCEEEccCCC
Confidence            4566899998863  3578999998877632     55666  7899999999888764 3 346678888888888888


Q ss_pred             CCcc-CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCC-CCCCC-chhhhcCCCCCCEEEcccC
Q 040113          164 FFGQ-IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV-SIRST-IPHNLANLSSLTFLSLHSC  240 (887)
Q Consensus       164 ~~~~-~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~l~~L~~L~L~~n  240 (887)
                      +.+. +|..+..+++|++|++++|.+.      ...+..++.+++|++|++++| .+++. ++..+..+++|++|++++|
T Consensus       105 l~~~~~~~~~~~~~~L~~L~L~~~~l~------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~  178 (336)
T 2ast_B          105 IEVSTLHGILSQCSKLQNLSLEGLRLS------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWC  178 (336)
T ss_dssp             ECHHHHHHHHTTBCCCSEEECTTCBCC------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCC
T ss_pred             cCHHHHHHHHhhCCCCCEEeCcCcccC------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCC
Confidence            7655 6777777888888888877622      234566667777777777777 45542 4555666777777777777


Q ss_pred             -CCCCc-cccccCCCC-CCcEEeCcCC--CCC-CcchhhccCCCCCCEEEccCCC-CCCccchhhhCCCCCCEEEccCCc
Q 040113          241 -GLQGR-IQSSLGNLS-KLLHLDLSLN--ELL-GELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNLVSLEELDLSFNK  313 (887)
Q Consensus       241 -~l~~~-~~~~l~~l~-~L~~L~Ls~n--~l~-~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~~L~L~~n~  313 (887)
                       .+++. ++..+..++ +|++|++++|  .++ +.+|..+..+++|++|++++|. +++..+..+..+++|++|++++|.
T Consensus       179 ~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~  258 (336)
T 2ast_B          179 FDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCY  258 (336)
T ss_dssp             TTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCT
T ss_pred             CCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCC
Confidence             66543 455566666 7777777776  344 3455556666677777777766 555556666666667777776664


Q ss_pred             -CCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcccc
Q 040113          314 -LSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR  373 (887)
Q Consensus       314 -l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~  373 (887)
                       +......  .++++++|+.|++++| ++......+.  ..++.|++++|++++..|..++
T Consensus       259 ~~~~~~~~--~l~~~~~L~~L~l~~~-i~~~~~~~l~--~~l~~L~l~~n~l~~~~~~~~~  314 (336)
T 2ast_B          259 DIIPETLL--ELGEIPTLKTLQVFGI-VPDGTLQLLK--EALPHLQINCSHFTTIARPTIG  314 (336)
T ss_dssp             TCCGGGGG--GGGGCTTCCEEECTTS-SCTTCHHHHH--HHSTTSEESCCCSCCTTCSSCS
T ss_pred             CCCHHHHH--HHhcCCCCCEEeccCc-cCHHHHHHHH--hhCcceEEecccCccccCCccc
Confidence             2111111  1455666666666666 3322111111  1244444566666655554443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.87  E-value=2.8e-22  Score=210.28  Aligned_cols=212  Identities=28%  Similarity=0.283  Sum_probs=152.9

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      ....+++|++|++++|.+...   +.++.+++|++|++++|.+.+ + ..+..+++|++|++++|.+..+.      +..
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~~---~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~------~~~  104 (272)
T 3rfs_A           36 TQNELNSIDQIIANNSDIKSV---QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLP------NGV  104 (272)
T ss_dssp             CHHHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCC------TTT
T ss_pred             ccccccceeeeeeCCCCcccc---cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccC------hhH
Confidence            456677788888887777642   347777788888888877755 2 36777778888888877754332      344


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +..+++|++|++++|.+.+..+..++.+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..++.+++|+
T Consensus       105 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  184 (272)
T 3rfs_A          105 FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLK  184 (272)
T ss_dssp             TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCC
Confidence            66777788888888877777676677777888888888877766666677777888888888877766666677777888


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRS  353 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~  353 (887)
                      +|++++|.+++..+..+..+++|++|++++|.+.+.         +++|+.++++.|.++|.+|..++.++.
T Consensus       185 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~---------~~~l~~l~~~~n~~~g~ip~~~~~~~~  247 (272)
T 3rfs_A          185 DLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT---------CPGIRYLSEWINKHSGVVRNSAGSVAP  247 (272)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCC---------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred             EEECCCCcCCccCHHHHhCCcCCCEEEccCCCcccc---------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence            888888877776666677777888888877766533         446777777777777777777665543

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.87  E-value=1.7e-22  Score=216.40  Aligned_cols=205  Identities=21%  Similarity=0.187  Sum_probs=135.1

Q ss_pred             ceEEecCCCcccccCCccc--cCCCcccEEEccCCeeeeeCC----ccccCCCCCcEEeCCCCcCCCCCCccccCCCCCC
Q 040113          575 LSILDLRANNFFGTIPNTF--MKESRLGMIDLSHNLFQGRIP----RSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT  648 (887)
Q Consensus       575 L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~----~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  648 (887)
                      |++|++++|++++..|..+  ..+++|++|++++|.+++..+    ..+..+++|++|++++|++.+..+..+..+++|+
T Consensus        93 L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~  172 (310)
T 4glp_A           93 LKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALT  172 (310)
T ss_dssp             CCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCC
T ss_pred             eeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCC
Confidence            4444444444444444444  444555555555555554332    2334566777777777777666666777777777


Q ss_pred             EEEccCCccccc--CCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccc
Q 040113          649 VLILQSNKFYGI--IREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVAT  726 (887)
Q Consensus       649 ~L~L~~N~l~~~--~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~  726 (887)
                      +|++++|++.+.  ++.......+++|++|++++|+++ .+|.....-+                               
T Consensus       173 ~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~-------------------------------  220 (310)
T 4glp_A          173 SLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALA-------------------------------  220 (310)
T ss_dssp             EEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHH-------------------------------
T ss_pred             EEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHH-------------------------------
Confidence            777777776542  222222346778888888888775 2222100000                               


Q ss_pred             cccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcc---cCCCEEeCCCCcccccCCccccCCCCCCEEeCC
Q 040113          727 YDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANL---KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLS  803 (887)
Q Consensus       727 ~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l---~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls  803 (887)
                                       ...+.|++|||++|++++.+|..++.+   ++|++|+|++|+++ .+|..+.  ++|+.|||+
T Consensus       221 -----------------~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls  280 (310)
T 4glp_A          221 -----------------AAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLS  280 (310)
T ss_dssp             -----------------HHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECC
T ss_pred             -----------------hcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECC
Confidence                             004568889999999998888777777   59999999999999 6777765  799999999


Q ss_pred             CCcccccCCccccCCCCCCeeecccCcccc
Q 040113          804 NNNFLGQIPQQLVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       804 ~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g  833 (887)
                      +|++++. |. +..+++|++|++++|+++.
T Consensus       281 ~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          281 SNRLNRA-PQ-PDELPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             SCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred             CCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence            9999974 33 6788999999999999874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.87  E-value=3e-23  Score=227.39  Aligned_cols=260  Identities=17%  Similarity=0.167  Sum_probs=183.1

Q ss_pred             EEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCC----CcccccCCcceEEecCCCcccccCCccccCC-----Cc
Q 040113          528 NYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLP----RCLGSFSDKLSILDLRANNFFGTIPNTFMKE-----SR  598 (887)
Q Consensus       528 ~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p----~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l-----~~  598 (887)
                      .+.++.|.+.|.+|..+...++|++|++++|.+++..+    ..+..++.+|++|++++|++++..+..+..+     ++
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~   81 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN   81 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence            35567777777787777777778888888888886666    5666665358888888888887777666654     88


Q ss_pred             ccEEEccCCeeeeeCCcc----ccCC-CCCcEEeCCCCcCCCCCCccc----cC-CCCCCEEEccCCcccccCCCCcc--
Q 040113          599 LGMIDLSHNLFQGRIPRS----LINC-SKLEFLDIGDNQIRDIFPSWL----GT-LPNLTVLILQSNKFYGIIREPRI--  666 (887)
Q Consensus       599 L~~L~Ls~N~l~~~~~~~----l~~l-~~L~~L~L~~N~l~~~~~~~~----~~-l~~L~~L~L~~N~l~~~~~~~~~--  666 (887)
                      |++|++++|.+++..+..    +..+ ++|++|++++|++++..+..+    .. .++|++|+|++|++.......+.  
T Consensus        82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~  161 (362)
T 3goz_A           82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI  161 (362)
T ss_dssp             CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred             ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence            888888888888766654    3444 788899999888887766543    33 35888999998888754322110  


Q ss_pred             ccCC-CCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccccccc
Q 040113          667 DCGF-SKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKV  745 (887)
Q Consensus       667 ~~~l-~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  745 (887)
                      ...+ ++|++|++++|++++..+......+                                               ...
T Consensus       162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l-----------------------------------------------~~~  194 (362)
T 3goz_A          162 LAAIPANVNSLNLRGNNLASKNCAELAKFL-----------------------------------------------ASI  194 (362)
T ss_dssp             HHTSCTTCCEEECTTSCGGGSCHHHHHHHH-----------------------------------------------HTS
T ss_pred             HhcCCccccEeeecCCCCchhhHHHHHHHH-----------------------------------------------HhC
Confidence            1233 3888999999988755443311100                                               001


Q ss_pred             CCceeEEEeecCcCCcc----Chhhhhcc-cCCCEEeCCCCcccccCC----ccccCCCCCCEEeCCCCcccccC-----
Q 040113          746 PDILTSIILSSNRFDGM----IPTSIANL-KGLQVLNLDNNNLQGHIP----SCLGNLTNLESLDLSNNNFLGQI-----  811 (887)
Q Consensus       746 ~~~L~~L~Ls~N~l~~~----ip~~l~~l-~~L~~L~Ls~N~l~~~~p----~~l~~L~~L~~L~Ls~N~l~~~~-----  811 (887)
                      ++.|+.|||++|.+++.    ++..+..+ ++|++|+|++|.+++..+    ..+..+++|+.|+|++|.+.+..     
T Consensus       195 ~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~  274 (362)
T 3goz_A          195 PASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCK  274 (362)
T ss_dssp             CTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHH
T ss_pred             CCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHH
Confidence            24688899999988863    45556553 589999999998887544    44567788999999999855443     


Q ss_pred             --CccccCCCCCCeeecccCccccc
Q 040113          812 --PQQLVELTFLEFFNVSDNYLTGP  834 (887)
Q Consensus       812 --p~~l~~L~~L~~L~ls~N~l~g~  834 (887)
                        +..+..+++|++||+++|++.+.
T Consensus       275 ~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          275 ALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             HHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             HHHHHhccCCceEEEecCCCcCCCc
Confidence              33567788888999999988765

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=5.7e-21  Score=201.75  Aligned_cols=204  Identities=25%  Similarity=0.277  Sum_probs=147.2

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL  623 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  623 (887)
                      +.+++++++++++++.++ .+|..+.   +.++.|++++|++++..+..|..+++|++|++++|.+++..+.  ..+++|
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L   79 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVL   79 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTC
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcC
Confidence            556788999999999987 5665543   3789999999999888888888899999999999998876443  678888


Q ss_pred             cEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhccc
Q 040113          624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNT  703 (887)
Q Consensus       624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~  703 (887)
                      ++|++++|+++.. |..+..+++|++|++++|++++..+..+  ..+++|+.|++++|+++ .+|...|..         
T Consensus        80 ~~L~Ls~N~l~~l-~~~~~~l~~L~~L~l~~N~l~~l~~~~~--~~l~~L~~L~L~~N~l~-~~~~~~~~~---------  146 (290)
T 1p9a_G           80 GTLDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK-TLPPGLLTP---------  146 (290)
T ss_dssp             CEEECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC-CCCTTTTTT---------
T ss_pred             CEEECCCCcCCcC-chhhccCCCCCEEECCCCcCcccCHHHH--cCCCCCCEEECCCCCCC-ccChhhccc---------
Confidence            8888888888754 6677788888888888888877655544  56777777777777776 333322111         


Q ss_pred             CCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcc
Q 040113          704 SDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNL  783 (887)
Q Consensus       704 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l  783 (887)
                                                                .+.|+.|+|++|++++..+..+..+++|+.|+|++|++
T Consensus       147 ------------------------------------------l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l  184 (290)
T 1p9a_G          147 ------------------------------------------TPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSL  184 (290)
T ss_dssp             ------------------------------------------CTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ------------------------------------------ccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcC
Confidence                                                      34566677777777655555566667777777777776


Q ss_pred             cccCCccccCCCCCCEEeCCCCcccc
Q 040113          784 QGHIPSCLGNLTNLESLDLSNNNFLG  809 (887)
Q Consensus       784 ~~~~p~~l~~L~~L~~L~Ls~N~l~~  809 (887)
                      + .+|..+..+.+|+.|+|++|++.+
T Consensus       185 ~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          185 Y-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             C-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             C-ccChhhcccccCCeEEeCCCCccC
Confidence            6 556666666667777777776654

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.86  E-value=1.3e-20  Score=199.08  Aligned_cols=203  Identities=23%  Similarity=0.220  Sum_probs=113.2

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      .+.+++++++++++++.++.  +|..+.  +++++|+|++|.+.+..|..+..+++|++|++++|.+..+..        
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~--------   72 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQV--------   72 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--CCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEEC--------
T ss_pred             cccccCCccEEECCCCCCCc--CCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccC--------
Confidence            45667788888888888774  565554  678888888888877777777788888888888877544321        


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      .+.+++|++|++++|.+. .+|..+..+++|++|++++|++++..+..|.++++|++|++++|++.+..+..|..+++|+
T Consensus        73 ~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~  151 (290)
T 1p9a_G           73 DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLE  151 (290)
T ss_dssp             CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred             CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCC
Confidence            134555555555555554 2344444555555555555555544444455555555555555555444334444444555


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF  340 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l  340 (887)
                      +|++++|++++..+..+..+++|++|++++|+++ .+|..  +...++|+.+++++|.+
T Consensus       152 ~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~--~~~~~~L~~l~L~~Np~  207 (290)
T 1p9a_G          152 KLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKG--FFGSHLLPFAFLHGNPW  207 (290)
T ss_dssp             EEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTT--TTTTCCCSEEECCSCCB
T ss_pred             EEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChh--hcccccCCeEEeCCCCc
Confidence            5555555444333333444444444444444444 33333  33333444444444433

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.86  E-value=1.4e-22  Score=224.45  Aligned_cols=243  Identities=16%  Similarity=0.183  Sum_probs=121.2

Q ss_pred             CccccCCCCCCEEECCCCCCCccCC----ccccCCCCCcEEEccCCCCCCccccCCChH-------HHhhcCCCCCEEEc
Q 040113          145 PSEIINLSRLSYLNLSHSSFFGQIP----SEILELVNLVSLDLSLNSGYGLELQKPNFA-------NLVEKLSNLETLDL  213 (887)
Q Consensus       145 p~~~~~l~~L~~L~Ls~n~~~~~~p----~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~-------~~~~~l~~L~~L~L  213 (887)
                      +..+..+++|++|+|++|.+.+..+    ..+..+++|++|++++|.+..+.   +.+|       ..+..+++|++|++
T Consensus        25 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~---~~~~~~~~~l~~~l~~~~~L~~L~L  101 (386)
T 2ca6_A           25 FAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK---DEIPEALRLLLQALLKCPKLHTVRL  101 (386)
T ss_dssp             SHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCG---GGSHHHHHHHHHHHTTCTTCCEEEC
T ss_pred             HHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccc---cchhHHHHHHHHHHhhCCcccEEEC
Confidence            3344444555555555554443322    22334455555555544322221   1112       22345555555555


Q ss_pred             cCCCCCC----CchhhhcCCCCCCEEEcccCCCCCcccccc----CCC---------CCCcEEeCcCCCCC-Ccch---h
Q 040113          214 GYVSIRS----TIPHNLANLSSLTFLSLHSCGLQGRIQSSL----GNL---------SKLLHLDLSLNELL-GELP---V  272 (887)
Q Consensus       214 ~~n~~~~----~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l----~~l---------~~L~~L~Ls~n~l~-~~~p---~  272 (887)
                      ++|.+..    .++..+..+++|++|++++|.+++..+..+    ..+         ++|++|++++|.+. +.++   .
T Consensus       102 s~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~  181 (386)
T 2ca6_A          102 SDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK  181 (386)
T ss_dssp             CSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHH
T ss_pred             CCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHH
Confidence            5555554    244455555555555555555543222222    222         56666666666654 2233   3


Q ss_pred             hccCCCCCCEEEccCCCCCC-----ccchhhhCCCCCCEEEccCCcCC----CCCCchhhccCCCCccEEEccCCCCCCc
Q 040113          273 SIGNLHSLKKLDLSINNLSG-----ELPTSIQNLVSLEELDLSFNKLS----GEFPWSIVIGNFTQLQSLDFTSNKFSGE  343 (887)
Q Consensus       273 ~l~~l~~L~~L~L~~n~l~~-----~~~~~l~~l~~L~~L~L~~n~l~----~~~~~~~~~~~l~~L~~L~L~~n~l~~~  343 (887)
                      .+..+++|++|++++|.++.     ..+..+..+++|++|+|++|.++    +.++..  +..+++|++|++++|.+++.
T Consensus       182 ~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~--l~~~~~L~~L~L~~n~i~~~  259 (386)
T 2ca6_A          182 TFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA--LKSWPNLRELGLNDCLLSAR  259 (386)
T ss_dssp             HHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH--GGGCTTCCEEECTTCCCCHH
T ss_pred             HHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHH--HccCCCcCEEECCCCCCchh
Confidence            44455566666666665552     12224555666666666666653    333433  45556666666666665543


Q ss_pred             ----ccccc--CCCCCccEEEccCCcCCc----cCCccc-cCCCCCCEEEcCCCCCcccc
Q 040113          344 ----LHASI--GNLRSLEVLAIGRCNFSG----RIPSSL-RNLTQLITLDLSQNSYRGTM  392 (887)
Q Consensus       344 ----~~~~l--~~l~~L~~L~L~~n~i~~----~~~~~l-~~l~~L~~L~L~~n~l~~~~  392 (887)
                          ++..+  +.+++|++|++++|.+++    .+|..+ .++++|++|++++|.+++..
T Consensus       260 ~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          260 GAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             hHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence                33444  225666666666666655    244444 44566666666666665544

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.85  E-value=1.2e-20  Score=195.26  Aligned_cols=192  Identities=23%  Similarity=0.265  Sum_probs=126.8

Q ss_pred             CCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCc
Q 040113           87 DCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFG  166 (887)
Q Consensus        87 ~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~  166 (887)
                      +||.|.|++|..   ..+.++++++.+.. ++.  .+.  +.+++|+|++|.+.+. .+..|+++++|++|+|++|.+.+
T Consensus         3 ~Cp~~~gC~C~~---~~~~l~~~~~~l~~-~p~--~~~--~~l~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~   73 (251)
T 3m19_A            3 TCETVTGCTCNE---GKKEVDCQGKSLDS-VPS--GIP--ADTEKLDLQSTGLATL-SDATFRGLTKLTWLNLDYNQLQT   73 (251)
T ss_dssp             -CHHHHSSEEEG---GGTEEECTTCCCSS-CCS--CCC--TTCCEEECTTSCCCCC-CTTTTTTCTTCCEEECTTSCCCC
T ss_pred             cCCCCCceEcCC---CCeEEecCCCCccc-cCC--CCC--CCCCEEEccCCCcCcc-CHhHhcCcccCCEEECCCCcCCc
Confidence            688999999953   24468888887763 222  232  5777888888887765 45567777778888887777776


Q ss_pred             cCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCcc
Q 040113          167 QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRI  246 (887)
Q Consensus       167 ~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  246 (887)
                      ..|..+..+++|++|++++|.                              +++..+..+..+++|++|++++|.+++..
T Consensus        74 ~~~~~~~~l~~L~~L~L~~n~------------------------------l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  123 (251)
T 3m19_A           74 LSAGVFDDLTELGTLGLANNQ------------------------------LASLPLGVFDHLTQLDKLYLGGNQLKSLP  123 (251)
T ss_dssp             CCTTTTTTCTTCCEEECTTSC------------------------------CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             cCHhHhccCCcCCEEECCCCc------------------------------ccccChhHhcccCCCCEEEcCCCcCCCcC
Confidence            666556666666666666665                              44444444555666666666666666555


Q ss_pred             ccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCC
Q 040113          247 QSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE  317 (887)
Q Consensus       247 ~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~  317 (887)
                      +..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+++..+..+..+++|++|++++|++.+.
T Consensus       124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            55566666666666666666655555666667777777777777666566666777777777777776654

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.85  E-value=3.4e-21  Score=197.91  Aligned_cols=196  Identities=19%  Similarity=0.218  Sum_probs=125.0

Q ss_pred             cceEEecCCCcccccCCccccCCCcccEEEccCCe-eeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCCCCCEEE
Q 040113          574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL-FQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLPNLTVLI  651 (887)
Q Consensus       574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~  651 (887)
                      +|++|++++|++++..+..|..+++|++|++++|+ +++..+..|.++++|++|++++ |++++..+..|..+++|++|+
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~  111 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLG  111 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEE
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEe
Confidence            67788888888877777777777888888888886 7766666777778888888877 777777667777777777777


Q ss_pred             ccCCcccccCCCCccccCCCCCC---EEEcCCC-cCcccCChhhhhccccchhcccCCccccccccCCcccccccccccc
Q 040113          652 LQSNKFYGIIREPRIDCGFSKLR---IIDLSNN-RFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATY  727 (887)
Q Consensus       652 L~~N~l~~~~~~~~~~~~l~~L~---~L~Ls~N-~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  727 (887)
                      +++|++++. |. +  ..+++|+   .|++++| .++ .+|...|..                                 
T Consensus       112 l~~n~l~~l-p~-~--~~l~~L~~L~~L~l~~N~~l~-~i~~~~~~~---------------------------------  153 (239)
T 2xwt_C          112 IFNTGLKMF-PD-L--TKVYSTDIFFILEITDNPYMT-SIPVNAFQG---------------------------------  153 (239)
T ss_dssp             EEEECCCSC-CC-C--TTCCBCCSEEEEEEESCTTCC-EECTTTTTT---------------------------------
T ss_pred             CCCCCCccc-cc-c--ccccccccccEEECCCCcchh-hcCcccccc---------------------------------
Confidence            777777663 32 2  4455555   6666666 554 233221111                                 


Q ss_pred             ccceeeeeccccccccccCCcee-EEEeecCcCCccChhhhhcccCCCEEeCCCCc-ccccCCccccCC-CCCCEEeCCC
Q 040113          728 DYSLKMNNKGQIMTYDKVPDILT-SIILSSNRFDGMIPTSIANLKGLQVLNLDNNN-LQGHIPSCLGNL-TNLESLDLSN  804 (887)
Q Consensus       728 ~~~~~~~~~~~~~~~~~~~~~L~-~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~-l~~~~p~~l~~L-~~L~~L~Ls~  804 (887)
                                        .+.|+ .|++++|+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.||+++
T Consensus       154 ------------------l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~  214 (239)
T 2xwt_C          154 ------------------LCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQ  214 (239)
T ss_dssp             ------------------TBSSEEEEECCSCCCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTT
T ss_pred             ------------------hhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCC
Confidence                              23455 6666666666 333322222566666666663 665555666666 6666666666


Q ss_pred             CcccccCCccccCCCCCCeeecccC
Q 040113          805 NNFLGQIPQQLVELTFLEFFNVSDN  829 (887)
Q Consensus       805 N~l~~~~p~~l~~L~~L~~L~ls~N  829 (887)
                      |++++..+.   .+.+|+.|+++++
T Consensus       215 N~l~~l~~~---~~~~L~~L~l~~~  236 (239)
T 2xwt_C          215 TSVTALPSK---GLEHLKELIARNT  236 (239)
T ss_dssp             CCCCCCCCT---TCTTCSEEECTTC
T ss_pred             CccccCChh---HhccCceeeccCc
Confidence            666643322   4555666666554

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.84  E-value=1.5e-21  Score=212.06  Aligned_cols=251  Identities=21%  Similarity=0.260  Sum_probs=183.1

Q ss_pred             CCCeEECCCCCCCCCCCCccccCC--CCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcC
Q 040113          128 HLEWLNLAFNDFKSSEIPSEIINL--SRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKL  205 (887)
Q Consensus       128 ~L~~L~L~~n~~~~~~lp~~~~~l--~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l  205 (887)
                      .++.++++++.+.    +..+..+  +++++|++++|.+.+..+. +..+++|++|++++|.+.     ...++..+..+
T Consensus        48 ~~~~l~l~~~~~~----~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~-----~~~~~~~~~~~  117 (336)
T 2ast_B           48 LWQTLDLTGKNLH----PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIE-----VSTLHGILSQC  117 (336)
T ss_dssp             TSSEEECTTCBCC----HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEEC-----HHHHHHHHTTB
T ss_pred             hheeeccccccCC----HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcC-----HHHHHHHHhhC
Confidence            4789999998875    4556777  8999999999998776654 668899999999998621     12267778888


Q ss_pred             CCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccC-CCCCc-cccccCCCCCCcEEeCcCC-CCCCc-chhhccCCC-CC
Q 040113          206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSC-GLQGR-IQSSLGNLSKLLHLDLSLN-ELLGE-LPVSIGNLH-SL  280 (887)
Q Consensus       206 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n-~l~~~-~~~~l~~l~~L~~L~Ls~n-~l~~~-~p~~l~~l~-~L  280 (887)
                      ++|++|++++|.+.+..+..++.+++|++|++++| .+++. ++..+..+++|++|++++| .+++. ++..+..++ +|
T Consensus       118 ~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L  197 (336)
T 2ast_B          118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  197 (336)
T ss_dssp             CCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             CCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCC
Confidence            89999999988888878888888888888888888 56653 5666777888888888888 77654 566677888 88


Q ss_pred             CEEEccCC--CCC-CccchhhhCCCCCCEEEccCCc-CCCCCCchhhccCCCCccEEEccCCC-CCCccccccCCCCCcc
Q 040113          281 KKLDLSIN--NLS-GELPTSIQNLVSLEELDLSFNK-LSGEFPWSIVIGNFTQLQSLDFTSNK-FSGELHASIGNLRSLE  355 (887)
Q Consensus       281 ~~L~L~~n--~l~-~~~~~~l~~l~~L~~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L~  355 (887)
                      ++|++++|  .++ +.++..+..+++|++|++++|. +++..+..  ++.+++|++|++++|. +.......++.+++|+
T Consensus       198 ~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~  275 (336)
T 2ast_B          198 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLK  275 (336)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCC
T ss_pred             CEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCC
Confidence            88888888  455 4566677778888888888887 55555554  6777888888888874 3322223566777888


Q ss_pred             EEEccCCcCCccCCccccCC-CCCCEEEcCCCCCccccch
Q 040113          356 VLAIGRCNFSGRIPSSLRNL-TQLITLDLSQNSYRGTMEL  394 (887)
Q Consensus       356 ~L~L~~n~i~~~~~~~l~~l-~~L~~L~L~~n~l~~~~~~  394 (887)
                      +|++++| ++..   .+..+ ..++.|++++|.+++..+.
T Consensus       276 ~L~l~~~-i~~~---~~~~l~~~l~~L~l~~n~l~~~~~~  311 (336)
T 2ast_B          276 TLQVFGI-VPDG---TLQLLKEALPHLQINCSHFTTIARP  311 (336)
T ss_dssp             EEECTTS-SCTT---CHHHHHHHSTTSEESCCCSCCTTCS
T ss_pred             EEeccCc-cCHH---HHHHHHhhCcceEEecccCccccCC
Confidence            8888777 3322   22222 2355556777777766554

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.84  E-value=1.4e-20  Score=193.36  Aligned_cols=204  Identities=20%  Similarity=0.289  Sum_probs=166.8

Q ss_pred             cCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc-ccccCCccccCCCcccEEEccC-CeeeeeCCcc
Q 040113          539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN-FFGTIPNTFMKESRLGMIDLSH-NLFQGRIPRS  616 (887)
Q Consensus       539 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~Ls~-N~l~~~~~~~  616 (887)
                      .+|. +  .++|++|++++|++++..+..+..++ +|++|++++|+ +++..+..|..+++|++|++++ |++++..+..
T Consensus        25 ~ip~-~--~~~l~~L~l~~n~l~~i~~~~~~~l~-~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~  100 (239)
T 2xwt_C           25 RIPS-L--PPSTQTLKLIETHLRTIPSHAFSNLP-NISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDA  100 (239)
T ss_dssp             SCCC-C--CTTCCEEEEESCCCSEECTTTTTTCT-TCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTS
T ss_pred             ccCC-C--CCcccEEEEeCCcceEECHHHccCCC-CCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHH
Confidence            4554 3  34788999999998877777888887 79999999997 8877777888999999999998 8999888888


Q ss_pred             ccCCCCCcEEeCCCCcCCCCCCccccCCCCCC---EEEccCC-cccccCCCCccccCCCCCC-EEEcCCCcCcccCChhh
Q 040113          617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLT---VLILQSN-KFYGIIREPRIDCGFSKLR-IIDLSNNRFTGKLPSKS  691 (887)
Q Consensus       617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~---~L~L~~N-~l~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~~  691 (887)
                      |.++++|++|++++|++++. |. +..+++|+   +|++++| ++.+..+..+  .++++|+ .|++++|+++ .+|...
T Consensus       101 f~~l~~L~~L~l~~n~l~~l-p~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~--~~l~~L~~~L~l~~n~l~-~i~~~~  175 (239)
T 2xwt_C          101 LKELPLLKFLGIFNTGLKMF-PD-LTKVYSTDIFFILEITDNPYMTSIPVNAF--QGLCNETLTLKLYNNGFT-SVQGYA  175 (239)
T ss_dssp             EECCTTCCEEEEEEECCCSC-CC-CTTCCBCCSEEEEEEESCTTCCEECTTTT--TTTBSSEEEEECCSCCCC-EECTTT
T ss_pred             hCCCCCCCEEeCCCCCCccc-cc-cccccccccccEEECCCCcchhhcCcccc--cchhcceeEEEcCCCCCc-ccCHhh
Confidence            99999999999999999884 54 88888888   9999999 8887765544  6788999 9999999987 666542


Q ss_pred             hhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCc-CCccChhhhhcc
Q 040113          692 FLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNR-FDGMIPTSIANL  770 (887)
Q Consensus       692 ~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~-l~~~ip~~l~~l  770 (887)
                      |.                                                    .+.|+.|++++|. +++..+..|..+
T Consensus       176 ~~----------------------------------------------------~~~L~~L~L~~n~~l~~i~~~~~~~l  203 (239)
T 2xwt_C          176 FN----------------------------------------------------GTKLDAVYLNKNKYLTVIDKDAFGGV  203 (239)
T ss_dssp             TT----------------------------------------------------TCEEEEEECTTCTTCCEECTTTTTTC
T ss_pred             cC----------------------------------------------------CCCCCEEEcCCCCCcccCCHHHhhcc
Confidence            21                                                    2468999999995 997778889999


Q ss_pred             -cCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCc
Q 040113          771 -KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN  806 (887)
Q Consensus       771 -~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~  806 (887)
                       ++|+.|++++|++++ +|..  .+++|+.|+++++.
T Consensus       204 ~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~~  237 (239)
T 2xwt_C          204 YSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNTW  237 (239)
T ss_dssp             SBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC-
T ss_pred             ccCCcEEECCCCcccc-CChh--HhccCceeeccCcc
Confidence             999999999999995 4543  67899999998874

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.84  E-value=1.5e-21  Score=213.85  Aligned_cols=184  Identities=20%  Similarity=0.248  Sum_probs=87.5

Q ss_pred             CCCCEEEccCCCCCCCchhhh----cCC-CCCCEEEcccCCCCCcccccc----CC-CCCCcEEeCcCCCCCCc----ch
Q 040113          206 SNLETLDLGYVSIRSTIPHNL----ANL-SSLTFLSLHSCGLQGRIQSSL----GN-LSKLLHLDLSLNELLGE----LP  271 (887)
Q Consensus       206 ~~L~~L~L~~n~~~~~~~~~l----~~l-~~L~~L~L~~n~l~~~~~~~l----~~-l~~L~~L~Ls~n~l~~~----~p  271 (887)
                      ++|++|++++|.+++..+..+    ..+ ++|++|++++|.+++..+..+    .. .++|++|++++|.+.+.    ++
T Consensus        80 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~  159 (362)
T 3goz_A           80 ANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELI  159 (362)
T ss_dssp             TTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHH
T ss_pred             CCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHH
Confidence            455555555555544443322    222 455555555555544333222    22 24555555555555432    22


Q ss_pred             hhccCCC-CCCEEEccCCCCCCccchhh----hCC-CCCCEEEccCCcCCCC----CCchhhccC-CCCccEEEccCCCC
Q 040113          272 VSIGNLH-SLKKLDLSINNLSGELPTSI----QNL-VSLEELDLSFNKLSGE----FPWSIVIGN-FTQLQSLDFTSNKF  340 (887)
Q Consensus       272 ~~l~~l~-~L~~L~L~~n~l~~~~~~~l----~~l-~~L~~L~L~~n~l~~~----~~~~~~~~~-l~~L~~L~L~~n~l  340 (887)
                      ..+..++ +|++|++++|.+++..+..+    ..+ ++|++|++++|.+.+.    ++..  +.. .++|++|++++|.+
T Consensus       160 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~--l~~~~~~L~~L~Ls~N~l  237 (362)
T 3goz_A          160 QILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYI--FSSIPNHVVSLNLCLNCL  237 (362)
T ss_dssp             HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHH--HHHSCTTCCEEECCSSCC
T ss_pred             HHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHH--HhcCCCCceEEECcCCCC
Confidence            3333443 56666666665554444322    233 3566666666655532    1111  222 23566666666655


Q ss_pred             CCccc----cccCCCCCccEEEccCCcCCcc-------CCccccCCCCCCEEEcCCCCCccc
Q 040113          341 SGELH----ASIGNLRSLEVLAIGRCNFSGR-------IPSSLRNLTQLITLDLSQNSYRGT  391 (887)
Q Consensus       341 ~~~~~----~~l~~l~~L~~L~L~~n~i~~~-------~~~~l~~l~~L~~L~L~~n~l~~~  391 (887)
                      ++..+    ..+..+++|++|++++|.+.+.       ++..+..+++|++|++++|.+...
T Consensus       238 ~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~  299 (362)
T 3goz_A          238 HGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS  299 (362)
T ss_dssp             CCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred             CcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence            54322    2234455566666666653221       223444555666666666665544

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.84  E-value=1.1e-21  Score=217.30  Aligned_cols=245  Identities=20%  Similarity=0.192  Sum_probs=177.8

Q ss_pred             ccccCCCCCeEECCCCCCCCCC---CCccccCCCCCCEEECCCC---CCCccCCccc-------cCCCCCcEEEccCCCC
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSE---IPSEIINLSRLSYLNLSHS---SFFGQIPSEI-------LELVNLVSLDLSLNSG  188 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~---lp~~~~~l~~L~~L~Ls~n---~~~~~~p~~l-------~~l~~L~~L~l~~n~~  188 (887)
                      .+..+++|++|+|++|.++...   ++..+..+++|++|+|++|   ++.+.+|..+       ..+++|++|++++|.+
T Consensus        27 ~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l  106 (386)
T 2ca6_A           27 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  106 (386)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcC
Confidence            5667778888888888776531   2234667888888888885   3445566555       6788888888888874


Q ss_pred             CCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhh----cCC---------CCCCEEEcccCCCC-Cccc---cccC
Q 040113          189 YGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL----ANL---------SSLTFLSLHSCGLQ-GRIQ---SSLG  251 (887)
Q Consensus       189 ~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l----~~l---------~~L~~L~L~~n~l~-~~~~---~~l~  251 (887)
                      ....  ...++..+..+++|++|++++|.+....+..+    ..+         ++|++|++++|+++ +.++   ..+.
T Consensus       107 ~~~~--~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~  184 (386)
T 2ca6_A          107 GPTA--QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  184 (386)
T ss_dssp             CTTT--HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             CHHH--HHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHH
Confidence            3211  01356778888888888888888865444333    333         88888888888887 3344   4566


Q ss_pred             CCCCCcEEeCcCCCCCC-----cchhhccCCCCCCEEEccCCCCC----CccchhhhCCCCCCEEEccCCcCCCC----C
Q 040113          252 NLSKLLHLDLSLNELLG-----ELPVSIGNLHSLKKLDLSINNLS----GELPTSIQNLVSLEELDLSFNKLSGE----F  318 (887)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~-----~~p~~l~~l~~L~~L~L~~n~l~----~~~~~~l~~l~~L~~L~L~~n~l~~~----~  318 (887)
                      .+++|++|++++|.+..     ..+..+..+++|++|+|++|.++    +.+|..+..+++|++|+|++|.+++.    +
T Consensus       185 ~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l  264 (386)
T 2ca6_A          185 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  264 (386)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHH
Confidence            78889999999988862     23447788889999999999885    56778888888999999999988754    3


Q ss_pred             CchhhccCCCCccEEEccCCCCCC----cccccc-CCCCCccEEEccCCcCCccC
Q 040113          319 PWSIVIGNFTQLQSLDFTSNKFSG----ELHASI-GNLRSLEVLAIGRCNFSGRI  368 (887)
Q Consensus       319 ~~~~~~~~l~~L~~L~L~~n~l~~----~~~~~l-~~l~~L~~L~L~~n~i~~~~  368 (887)
                      +.....+.+++|+.|++++|.+++    .+|..+ .++++|++|++++|.+++..
T Consensus       265 ~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~  319 (386)
T 2ca6_A          265 VDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED  319 (386)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred             HHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence            333111448889999999999887    467666 56889999999999988665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.84  E-value=8.2e-20  Score=194.91  Aligned_cols=173  Identities=25%  Similarity=0.281  Sum_probs=93.9

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      ....+++|++|++++|.+..  +| .+..+++|++|++++|.+.+. +. +..+++|++|++++|.+..++        .
T Consensus        36 ~~~~l~~L~~L~l~~~~i~~--l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~~--------~  102 (308)
T 1h6u_A           36 TQADLDGITTLSAFGTGVTT--IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNVS--------A  102 (308)
T ss_dssp             CHHHHHTCCEEECTTSCCCC--CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCCG--------G
T ss_pred             cHHHcCCcCEEEeeCCCccC--ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCch--------h
Confidence            34567777888888777764  33 477777778888877777543 33 667777777777777643321        3


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +..+++|++|++++|.+.+..  .+..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|+
T Consensus       103 ~~~l~~L~~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~  176 (308)
T 1h6u_A          103 IAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLT  176 (308)
T ss_dssp             GTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCC
T ss_pred             hcCCCCCCEEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCC
Confidence            455555555555555554432  14555555555555555543322  4444555555555554443221  44444444


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      +|++++|.+++..+  +..+++|++|++++|+++
T Consensus       177 ~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~  208 (308)
T 1h6u_A          177 TLKADDNKISDISP--LASLPNLIEVHLKNNQIS  208 (308)
T ss_dssp             EEECCSSCCCCCGG--GGGCTTCCEEECTTSCCC
T ss_pred             EEECCCCccCcChh--hcCCCCCCEEEccCCccC
Confidence            44444444443222  444444444444444444

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.83  E-value=1.7e-20  Score=200.79  Aligned_cols=202  Identities=22%  Similarity=0.193  Sum_probs=120.0

Q ss_pred             CCCCEEEccCCCCCCCchhhh--cCCCCCCEEEcccCCCCCccc----cccCCCCCCcEEeCcCCCCCCcchhhccCCCC
Q 040113          206 SNLETLDLGYVSIRSTIPHNL--ANLSSLTFLSLHSCGLQGRIQ----SSLGNLSKLLHLDLSLNELLGELPVSIGNLHS  279 (887)
Q Consensus       206 ~~L~~L~L~~n~~~~~~~~~l--~~l~~L~~L~L~~n~l~~~~~----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~  279 (887)
                      ++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+..++.+++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~  170 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPA  170 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCC
Confidence            446666666666666665555  566666666666666655333    23345666666666666666555566666666


Q ss_pred             CCEEEccCCCCCCc--cc--hhhhCCCCCCEEEccCCcCCCCCCch--hhccCCCCccEEEccCCCCCCccccccCCC--
Q 040113          280 LKKLDLSINNLSGE--LP--TSIQNLVSLEELDLSFNKLSGEFPWS--IVIGNFTQLQSLDFTSNKFSGELHASIGNL--  351 (887)
Q Consensus       280 L~~L~L~~n~l~~~--~~--~~l~~l~~L~~L~L~~n~l~~~~~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l--  351 (887)
                      |++|++++|++.+.  ++  ..++.+++|++|++++|+++. ++..  ..++.+++|++|++++|++++..|..+..+  
T Consensus       171 L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~  249 (310)
T 4glp_A          171 LTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMW  249 (310)
T ss_dssp             CCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCC
T ss_pred             CCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccC
Confidence            66666666665532  11  122456666666666666642 2210  013455666777777776666556555554  


Q ss_pred             -CCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCCccccchhhhhcCCCCCCEEEccCCccc
Q 040113          352 -RSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLS  415 (887)
Q Consensus       352 -~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~l~~l~~L~~L~L~~n~i~  415 (887)
                       ++|++|++++|+++ .+|..+.  ++|++|++++|++++...    +..+++|+.|++++|+++
T Consensus       250 ~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~~~----~~~l~~L~~L~L~~N~l~  307 (310)
T 4glp_A          250 SSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRAPQ----PDELPEVDNLTLDGNPFL  307 (310)
T ss_dssp             CTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSCCC----TTSCCCCSCEECSSTTTS
T ss_pred             cCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCCch----hhhCCCccEEECcCCCCC
Confidence             46777777777766 4555543  577777777777765422    355677777777777554

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.83  E-value=1.8e-19  Score=186.43  Aligned_cols=180  Identities=21%  Similarity=0.205  Sum_probs=156.3

Q ss_pred             ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc
Q 040113          505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN  584 (887)
Q Consensus       505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~  584 (887)
                      .+.++++++.++......+..++.+++++|.+.+..+..+..+++|++|++++|.+++..|..+..++ +|++|++++|+
T Consensus        16 ~~~l~~~~~~l~~~p~~~~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~   94 (251)
T 3m19_A           16 KKEVDCQGKSLDSVPSGIPADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-ELGTLGLANNQ   94 (251)
T ss_dssp             GTEEECTTCCCSSCCSCCCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-TCCEEECTTSC
T ss_pred             CeEEecCCCCccccCCCCCCCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC-cCCEEECCCCc
Confidence            44555555555544444456777788888888887788899999999999999999998888899988 79999999999


Q ss_pred             ccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCC
Q 040113          585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP  664 (887)
Q Consensus       585 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  664 (887)
                      +++..+..|..+++|++|++++|++++..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++.+..+..
T Consensus        95 l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~  174 (251)
T 3m19_A           95 LASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGA  174 (251)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred             ccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHH
Confidence            99888889999999999999999999888888999999999999999999998888999999999999999999887655


Q ss_pred             ccccCCCCCCEEEcCCCcCcccC
Q 040113          665 RIDCGFSKLRIIDLSNNRFTGKL  687 (887)
Q Consensus       665 ~~~~~l~~L~~L~Ls~N~l~~~i  687 (887)
                      +  ..+++|+.|++++|++.+..
T Consensus       175 ~--~~l~~L~~L~l~~N~~~c~~  195 (251)
T 3m19_A          175 F--DRLGKLQTITLFGNQFDCSR  195 (251)
T ss_dssp             T--TTCTTCCEEECCSCCBCTTS
T ss_pred             H--hCCCCCCEEEeeCCceeCCc
Confidence            5  67899999999999998773

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=2.9e-20  Score=202.54  Aligned_cols=242  Identities=19%  Similarity=0.182  Sum_probs=157.3

Q ss_pred             cEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCC-ccccCCCcccE-EEc
Q 040113          527 VNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIP-NTFMKESRLGM-IDL  604 (887)
Q Consensus       527 ~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~-L~L  604 (887)
                      ..++.++++++ .+|..+  .+++++|+|++|+|+...+..|.+++ +|++|+|++|++.+.+| .+|.++++++. +.+
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~   87 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLHEIRIE   87 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCCEEEEE
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhhhhhcc
Confidence            45566666655 455544  35677788888877755555677777 68888888887765444 46777776654 555


Q ss_pred             cCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCC-cccccCCCCccccCCCCCCEEEcCCCcC
Q 040113          605 SHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN-KFYGIIREPRIDCGFSKLRIIDLSNNRF  683 (887)
Q Consensus       605 s~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  683 (887)
                      ++|+++...|..|.++++|++|++++|++....+..+....++..|++.++ ++....+..+ ......++.|++++|++
T Consensus        88 ~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f-~~~~~~l~~L~L~~N~i  166 (350)
T 4ay9_X           88 KANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF-VGLSFESVILWLNKNGI  166 (350)
T ss_dssp             EETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSS-TTSBSSCEEEECCSSCC
T ss_pred             cCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccch-hhcchhhhhhccccccc
Confidence            667777777777777778888888888777776666666667777777553 4444333322 12224577777777777


Q ss_pred             cccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeec-CcCCcc
Q 040113          684 TGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS-NRFDGM  762 (887)
Q Consensus       684 ~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~-N~l~~~  762 (887)
                      + .+|...|.                                                    ...++.|++++ |.++..
T Consensus       167 ~-~i~~~~f~----------------------------------------------------~~~L~~l~l~~~n~l~~i  193 (350)
T 4ay9_X          167 Q-EIHNSAFN----------------------------------------------------GTQLDELNLSDNNNLEEL  193 (350)
T ss_dssp             C-EECTTSST----------------------------------------------------TEEEEEEECTTCTTCCCC
T ss_pred             c-CCChhhcc----------------------------------------------------ccchhHHhhccCCcccCC
Confidence            6 44433211                                                    23477888875 555544


Q ss_pred             ChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCc
Q 040113          763 IPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNY  830 (887)
Q Consensus       763 ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~  830 (887)
                      .+..|+.+++|++|||++|+|+...+..   +.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus       194 ~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          194 PNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             CHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            3456788888888888888888544444   44555665555554456663 7888888888887653

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.81  E-value=4.3e-19  Score=189.33  Aligned_cols=105  Identities=26%  Similarity=0.328  Sum_probs=47.7

Q ss_pred             ccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhc
Q 040113          148 IINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLA  227 (887)
Q Consensus       148 ~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~  227 (887)
                      +..+++|++|++++|.+.. +| .+..+++|++|++++|.+..+.       . +..+++|++|++++|.+.+.  ..+.
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~-------~-~~~l~~L~~L~L~~n~l~~~--~~~~  104 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLA-------P-LKNLTKITELELSGNPLKNV--SAIA  104 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-------G-GTTCCSCCEEECCSCCCSCC--GGGT
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCCh-------h-HccCCCCCEEEccCCcCCCc--hhhc
Confidence            3445666666666666532 33 3555555555555555532221       1 44444444444444444332  1244


Q ss_pred             CCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCC
Q 040113          228 NLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNEL  266 (887)
Q Consensus       228 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l  266 (887)
                      .+++|++|++++|.+++. + .+..+++|++|++++|.+
T Consensus       105 ~l~~L~~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A          105 GLQSIKTLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQI  141 (308)
T ss_dssp             TCTTCCEEECTTSCCCCC-G-GGTTCTTCCEEECCSSCC
T ss_pred             CCCCCCEEECCCCCCCCc-h-hhcCCCCCCEEECCCCcc
Confidence            444444444444444332 1 133444444444444443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.80  E-value=3.5e-19  Score=193.94  Aligned_cols=244  Identities=17%  Similarity=0.155  Sum_probs=193.6

Q ss_pred             ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCC-cccccCCcceEEecCCC
Q 040113          505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPR-CLGSFSDKLSILDLRAN  583 (887)
Q Consensus       505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~-~l~~l~~~L~~L~L~~N  583 (887)
                      -++++.+++.++.++...+..+++|++++|++....+..|.++++|++|+|++|++.+.+|. .|.+++..++.+.+++|
T Consensus        11 ~~~v~C~~~~Lt~iP~~l~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N   90 (350)
T 4ay9_X           11 NRVFLCQESKVTEIPSDLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN   90 (350)
T ss_dssp             TTEEEEESTTCCSCCTTCCTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEET
T ss_pred             CCEEEecCCCCCccCcCcCCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCC
Confidence            35678888888866555578899999999999877677899999999999999998776664 57777743445777889


Q ss_pred             cccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC-CcCCCCCCccccCCC-CCCEEEccCCcccccC
Q 040113          584 NFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD-NQIRDIFPSWLGTLP-NLTVLILQSNKFYGII  661 (887)
Q Consensus       584 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~-N~l~~~~~~~~~~l~-~L~~L~L~~N~l~~~~  661 (887)
                      ++++..|..|..+++|++|++++|++.+..+..+.....+..|++.+ +++....+..|..+. .++.|++++|+++.+.
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~i~  170 (350)
T 4ay9_X           91 NLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIH  170 (350)
T ss_dssp             TCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEEC
T ss_pred             cccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccCCC
Confidence            99999999999999999999999999988777788888899999965 678877777787775 6889999999998765


Q ss_pred             CCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceeeeecccccc
Q 040113          662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMT  741 (887)
Q Consensus       662 ~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  741 (887)
                      +..+   ...+|+.+++++|...+.+|.+.|..                                               
T Consensus       171 ~~~f---~~~~L~~l~l~~~n~l~~i~~~~f~~-----------------------------------------------  200 (350)
T 4ay9_X          171 NSAF---NGTQLDELNLSDNNNLEELPNDVFHG-----------------------------------------------  200 (350)
T ss_dssp             TTSS---TTEEEEEEECTTCTTCCCCCTTTTTT-----------------------------------------------
T ss_pred             hhhc---cccchhHHhhccCCcccCCCHHHhcc-----------------------------------------------
Confidence            5443   45789999998766556888765433                                               


Q ss_pred             ccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCc
Q 040113          742 YDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNN  806 (887)
Q Consensus       742 ~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~  806 (887)
                          .+.|+.|||++|+|+...+..   +.+|+.|.+.++.-...+|. +.++++|+.++++++.
T Consensus       201 ----l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          201 ----ASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             ----EECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             ----CcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence                356889999999999554444   45666666665554557774 8899999999998764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=2.2e-19  Score=205.38  Aligned_cols=190  Identities=24%  Similarity=0.399  Sum_probs=135.2

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      .+|+.|++++|.+++ +|..+.  + +|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +.+  +|++|+
T Consensus        59 ~~L~~L~Ls~n~L~~-lp~~l~--~-~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~  126 (571)
T 3cvr_A           59 NQFSELQLNRLNLSS-LPDNLP--P-QITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLD  126 (571)
T ss_dssp             TTCSEEECCSSCCSC-CCSCCC--T-TCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEE
T ss_pred             CCccEEEeCCCCCCc-cCHhHc--C-CCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEE
Confidence            478888888888876 666553  3 6888888888887 455   346788888888888886 555 554  788888


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK  707 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~  707 (887)
                      |++|+++++ |.   .+++|+.|++++|+++++ |.     .+++|+.|++++|++++ +|.  +               
T Consensus       127 Ls~N~l~~l-p~---~l~~L~~L~Ls~N~l~~l-p~-----~l~~L~~L~Ls~N~L~~-lp~--l---------------  178 (571)
T 3cvr_A          127 VDNNQLTML-PE---LPALLEYINADNNQLTML-PE-----LPTSLEVLSVRNNQLTF-LPE--L---------------  178 (571)
T ss_dssp             CCSSCCSCC-CC---CCTTCCEEECCSSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCC--C---------------
T ss_pred             CCCCcCCCC-CC---cCccccEEeCCCCccCcC-CC-----cCCCcCEEECCCCCCCC-cch--h---------------
Confidence            888888874 44   577888888888887763 22     35778888888887764 542  1               


Q ss_pred             ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCC-------CEEeCCC
Q 040113          708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGL-------QVLNLDN  780 (887)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L-------~~L~Ls~  780 (887)
                                                            .++|+.|+|++|+|+ .+|. +..  +|       +.|+|++
T Consensus       179 --------------------------------------~~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~  216 (571)
T 3cvr_A          179 --------------------------------------PESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRE  216 (571)
T ss_dssp             --------------------------------------CTTCCEEECCSSCCS-SCCC-CC----------CCEEEECCS
T ss_pred             --------------------------------------hCCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCC
Confidence                                                  134677788888777 5555 543  56       7788888


Q ss_pred             CcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCC
Q 040113          781 NNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTF  820 (887)
Q Consensus       781 N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~  820 (887)
                      |+|+ .+|..+..+++|+.|+|++|++++.+|..+..++.
T Consensus       217 N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  255 (571)
T 3cvr_A          217 NRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA  255 (571)
T ss_dssp             SCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHHH
T ss_pred             Ccce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhhc
Confidence            8777 46777777788888888888888777777766543

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.80  E-value=3.8e-19  Score=203.49  Aligned_cols=183  Identities=23%  Similarity=0.387  Sum_probs=155.0

Q ss_pred             cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113          574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ  653 (887)
Q Consensus       574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  653 (887)
                      +++.|++++|++++ +|..+  .++|++|++++|+++ .+|   ..+++|++|++++|++++ +|. +..  +|++|+++
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence            69999999999987 56544  378999999999999 566   457899999999999999 465 655  99999999


Q ss_pred             CCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccccccCCccccccccccccccceee
Q 040113          654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKM  733 (887)
Q Consensus       654 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  733 (887)
                      +|+++++ |.     .+++|+.|++++|.+++ +|..                                           
T Consensus       129 ~N~l~~l-p~-----~l~~L~~L~Ls~N~l~~-lp~~-------------------------------------------  158 (571)
T 3cvr_A          129 NNQLTML-PE-----LPALLEYINADNNQLTM-LPEL-------------------------------------------  158 (571)
T ss_dssp             SSCCSCC-CC-----CCTTCCEEECCSSCCSC-CCCC-------------------------------------------
T ss_pred             CCcCCCC-CC-----cCccccEEeCCCCccCc-CCCc-------------------------------------------
Confidence            9999984 33     47899999999999984 5531                                           


Q ss_pred             eeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCC-------CEEeCCCCc
Q 040113          734 NNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNL-------ESLDLSNNN  806 (887)
Q Consensus       734 ~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L-------~~L~Ls~N~  806 (887)
                                  ++.|+.|+|++|.|++ +|. +.  ++|++|+|++|+|+ .+|. |..  +|       +.|+|++|+
T Consensus       159 ------------l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~  218 (571)
T 3cvr_A          159 ------------PTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENR  218 (571)
T ss_dssp             ------------CTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSC
T ss_pred             ------------CCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCc
Confidence                        4578999999999997 776 66  89999999999999 6777 665  77       999999999


Q ss_pred             ccccCCccccCCCCCCeeecccCcccccCCCC
Q 040113          807 FLGQIPQQLVELTFLEFFNVSDNYLTGPIPQG  838 (887)
Q Consensus       807 l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~  838 (887)
                      ++ .+|..+..+++|++|++++|+++|.+|..
T Consensus       219 l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~  249 (571)
T 3cvr_A          219 IT-HIPENILSLDPTCTIILEDNPLSSRIRES  249 (571)
T ss_dssp             CC-CCCGGGGGSCTTEEEECCSSSCCHHHHHH
T ss_pred             ce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHH
Confidence            99 58888888999999999999999988853

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.78  E-value=1.1e-18  Score=175.06  Aligned_cols=106  Identities=18%  Similarity=0.243  Sum_probs=58.7

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      +.++.+++.++ .+|..+.   ++|++|++++|++++..+..|..+++|++|++++|++++..+..|..+++|++|++++
T Consensus        10 ~~v~c~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~   85 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGIP---AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLST   85 (208)
T ss_dssp             TEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEecCCCcc-CCCCCCC---CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCC
Confidence            34555555554 3343322   2466666666666655555555666666666666666655444555566666666666


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGI  660 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  660 (887)
                      |++++..+..|..+++|++|++++|++.+.
T Consensus        86 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  115 (208)
T 2o6s_A           86 NQLQSLPNGVFDKLTQLKELALNTNQLQSL  115 (208)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             CcCCccCHhHhcCccCCCEEEcCCCcCccc
Confidence            666555444455555555555555555443

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.76  E-value=2.2e-18  Score=172.67  Aligned_cols=175  Identities=20%  Similarity=0.205  Sum_probs=147.1

Q ss_pred             cEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113          506 LTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF  585 (887)
Q Consensus       506 ~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l  585 (887)
                      +.++++++.++......+..++++++++|++.+..+..+..+++|++|++++|++++..+..+..++ +|++|++++|++
T Consensus        10 ~~v~c~~~~l~~~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l   88 (208)
T 2o6s_A           10 TTVECYSQGRTSVPTGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLT-SLTYLNLSTNQL   88 (208)
T ss_dssp             TEEECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCC
T ss_pred             CEEEecCCCccCCCCCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCC-CcCEEECCCCcC
Confidence            3445555555444444455677777777777766667788999999999999999977777778887 799999999999


Q ss_pred             cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCc
Q 040113          586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPR  665 (887)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~  665 (887)
                      ++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|++++|++.+      
T Consensus        89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~------  162 (208)
T 2o6s_A           89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC------  162 (208)
T ss_dssp             CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC------
T ss_pred             CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec------
Confidence            98888888999999999999999998888889999999999999999999888789999999999999998764      


Q ss_pred             cccCCCCCCEEEcCCCcCcccCChh
Q 040113          666 IDCGFSKLRIIDLSNNRFTGKLPSK  690 (887)
Q Consensus       666 ~~~~l~~L~~L~Ls~N~l~~~ip~~  690 (887)
                         .+++|+.|+++.|+++|.+|..
T Consensus       163 ---~~~~l~~L~~~~n~~~g~ip~~  184 (208)
T 2o6s_A          163 ---TCPGIRYLSEWINKHSGVVRNS  184 (208)
T ss_dssp             ---CTTTTHHHHHHHHHCTTTBBCT
T ss_pred             ---CCCCHHHHHHHHHhCCceeecc
Confidence               4678999999999999999965

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.73  E-value=4.1e-17  Score=172.31  Aligned_cols=173  Identities=25%  Similarity=0.291  Sum_probs=98.1

Q ss_pred             ccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHH
Q 040113          122 SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL  201 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~  201 (887)
                      .+..+++|++|++++|.+...  + .++.+++|++|++++|.+.+..+  +.++++|++|++++|.+..++        .
T Consensus        41 ~~~~l~~L~~L~l~~~~i~~~--~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~--------~  107 (291)
T 1h6t_A           41 TQNELNSIDQIIANNSDIKSV--Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLS--------S  107 (291)
T ss_dssp             CHHHHHTCCEEECTTSCCCCC--T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCGG--------G
T ss_pred             chhhcCcccEEEccCCCcccC--h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCCh--------h
Confidence            345667777777777777643  3 36677777777777777754333  666777777777766633221        2


Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +..+++|++|++++|.+.+.                          ..+..+++|++|++++|.+++.  ..++.+++|+
T Consensus       108 l~~l~~L~~L~L~~n~i~~~--------------------------~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~  159 (291)
T 1h6t_A          108 LKDLKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLD  159 (291)
T ss_dssp             GTTCTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             hccCCCCCEEECCCCcCCCC--------------------------hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCC
Confidence            44445555555555444432                          2344455555555555555433  3455555555


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS  341 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  341 (887)
                      +|++++|.+++..+  +..+++|++|++++|.+++ ++ .  +..+++|+.|++++|.++
T Consensus       160 ~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~--l~~l~~L~~L~l~~n~i~  213 (291)
T 1h6t_A          160 TLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A--LAGLKNLDVLELFSQECL  213 (291)
T ss_dssp             EEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G--GTTCTTCSEEEEEEEEEE
T ss_pred             EEEccCCccccchh--hcCCCccCEEECCCCcCCC-Ch-h--hccCCCCCEEECcCCccc
Confidence            55555555554333  5556666666666665553 22 1  555666666666666654

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.72  E-value=8.4e-17  Score=186.32  Aligned_cols=187  Identities=25%  Similarity=0.280  Sum_probs=145.6

Q ss_pred             EEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEcc
Q 040113          105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS  184 (887)
Q Consensus       105 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~  184 (887)
                      .+++....+.+.+    .+..+++|++|++++|.+..  +| .++.+++|++|+|++|.+.+..|  +..+++|++|+|+
T Consensus        25 ~l~l~~~~i~~~~----~~~~L~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls   95 (605)
T 1m9s_A           25 KDNLKKKSVTDAV----TQNELNSIDQIIANNSDIKS--VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLD   95 (605)
T ss_dssp             HHHTTCSCTTSEE----CHHHHTTCCCCBCTTCCCCC--CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECC
T ss_pred             HHhccCCCccccc----chhcCCCCCEEECcCCCCCC--Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECc
Confidence            3444444444332    45678889999999998875  33 58889999999999998876544  8889999999999


Q ss_pred             CCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCC
Q 040113          185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN  264 (887)
Q Consensus       185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  264 (887)
                      +|.+..++        .+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..+..+++|++|+|++|
T Consensus        96 ~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           96 ENKIKDLS--------SLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             SSCCCCCT--------TSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             CCCCCCCh--------hhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            98854432        577888888888888888764  4578888888888888888865  56788888888888888


Q ss_pred             CCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCC
Q 040113          265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG  316 (887)
Q Consensus       265 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~  316 (887)
                      .+.+..|  +..+++|+.|+|++|.+.+.  ..+..+++|+.|+|++|++.+
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            8877655  88888888888888888754  357888888888888888874

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.72  E-value=4.5e-17  Score=177.99  Aligned_cols=179  Identities=25%  Similarity=0.297  Sum_probs=133.9

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCcccc-CCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFM-KESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG  629 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~-~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  629 (887)
                      +.++++++.++ .+|..+.   ..++.|+|++|++++..+..|. .+++|++|+|++|++++..+..|.++++|++|+|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls   96 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLS   96 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CEEEeCCCCcC-ccCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECC
Confidence            56788888876 4665543   2578888888888887777777 88888888888888888777788888888888888


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcccc
Q 040113          630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYL  709 (887)
Q Consensus       630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~  709 (887)
                      +|++++..+..|..+++|++|+|++|++.+..+..+  .++++|+.|+|++|+++ .+|...|..+.             
T Consensus        97 ~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~--~~l~~L~~L~L~~N~l~-~l~~~~~~~~~-------------  160 (361)
T 2xot_A           97 SNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAF--EDMAQLQKLYLSQNQIS-RFPVELIKDGN-------------  160 (361)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTT--TTCTTCCEEECCSSCCC-SCCGGGTC----------------
T ss_pred             CCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHh--CCcccCCEEECCCCcCC-eeCHHHhcCcc-------------
Confidence            888888877778888888888888888887766555  67788888888888887 45544321100             


Q ss_pred             ccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccC--CCEEeCCCCccc
Q 040113          710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG--LQVLNLDNNNLQ  784 (887)
Q Consensus       710 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~--L~~L~Ls~N~l~  784 (887)
                                                         .++.|+.|||++|+|++..+..+..++.  |+.|+|++|.+.
T Consensus       161 -----------------------------------~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          161 -----------------------------------KLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             ------------------------------------CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             -----------------------------------cCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence                                               1456778888888888766677777766  377888888765

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.72  E-value=5.4e-17  Score=163.69  Aligned_cols=143  Identities=16%  Similarity=0.128  Sum_probs=115.8

Q ss_pred             CCCCeEEcCCCccCCCCC-CcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEE
Q 040113          548 DSLEILVLSHNNLSGLLP-RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL  626 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p-~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  626 (887)
                      ..+++|++++|.+++..| ..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~-~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLP-QLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCC-CCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEE
Confidence            356788888888876654 3466776 68888888888888877788888888888888888888777778888888888


Q ss_pred             eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113          627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL  693 (887)
Q Consensus       627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  693 (887)
                      +|++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+..+...+.
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~l~  175 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAF--DTLHSLSTLNLLANPFNCNCYLAWLG  175 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTT--TTCTTCCEEECCSCCEECSGGGHHHH
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHh--cCCCCCCEEEecCcCCcCCCchHHHH
Confidence            888888888888888888888888888888888877665  67888999999999988877755443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.71  E-value=6e-17  Score=163.36  Aligned_cols=153  Identities=24%  Similarity=0.233  Sum_probs=131.4

Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccCC-hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF  585 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l  585 (887)
                      .+++++|.++......+..++++++++|++.+..+ ..|..+++|++|++++|.+++..+..|..++ +|++|+|++|++
T Consensus        15 ~l~~s~n~l~~iP~~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l   93 (220)
T 2v70_A           15 TVDCSNQKLNKIPEHIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS-GVNEILLTSNRL   93 (220)
T ss_dssp             EEECCSSCCSSCCSCCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred             EeEeCCCCcccCccCCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCC-CCCEEECCCCcc
Confidence            44455554444333334456677777777776644 4588999999999999999988888999998 799999999999


Q ss_pred             cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113          586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI  660 (887)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  660 (887)
                      ++..+..|..+++|++|++++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|++++|++.+.
T Consensus        94 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  168 (220)
T 2v70_A           94 ENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN  168 (220)
T ss_dssp             CCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred             CccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999865

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.71  E-value=7e-17  Score=170.57  Aligned_cols=150  Identities=29%  Similarity=0.377  Sum_probs=87.0

Q ss_pred             hhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCC
Q 040113          202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLK  281 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~  281 (887)
                      +..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+.  ..+..+++|+
T Consensus        64 ~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~  137 (291)
T 1h6t_A           64 IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLE  137 (291)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCC
T ss_pred             HhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCC
Confidence            3444555555555555554333  56666666666666666542  2366666777777777766543  3466666666


Q ss_pred             EEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccC
Q 040113          282 KLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR  361 (887)
Q Consensus       282 ~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~  361 (887)
                      +|++++|.+++.  ..++.+++|++|++++|++++..+    +..+++|+.|++++|.+++. + .+..+++|+.|++++
T Consensus       138 ~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~~~~----l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~  209 (291)
T 1h6t_A          138 SLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP----LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFS  209 (291)
T ss_dssp             EEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG----GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEE
T ss_pred             EEEccCCcCCcc--hhhccCCCCCEEEccCCccccchh----hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcC
Confidence            666666666643  445666666666666666654322    45566666666666666532 2 255556666666666


Q ss_pred             CcCC
Q 040113          362 CNFS  365 (887)
Q Consensus       362 n~i~  365 (887)
                      |.+.
T Consensus       210 n~i~  213 (291)
T 1h6t_A          210 QECL  213 (291)
T ss_dssp             EEEE
T ss_pred             Cccc
Confidence            5554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.71  E-value=9.5e-17  Score=161.90  Aligned_cols=142  Identities=20%  Similarity=0.253  Sum_probs=108.8

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|+.|++++|.+++..+..|..++ +|++|+|++|++++..|..|..+++|++|+|++|+++...+..|.++++|++|+
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~-~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~  110 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYK-KLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLL  110 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCT-TCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCC-CCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEE
Confidence            4677777777777766666777776 688888888888777777788888888888888888866666677788888888


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhh
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSF  692 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~  692 (887)
                      |++|++++..|..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+.....++
T Consensus       111 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~c~c~l~~l  173 (220)
T 2v9t_B          111 LNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF--SPLRAIQTMHLAQNPFICDCHLKWL  173 (220)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCEECSGGGHHH
T ss_pred             CCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHH--hCCCCCCEEEeCCCCcCCCCccHHH
Confidence            88888888877788888888888888888887765544  5678888888888888776554443

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.71  E-value=1.7e-16  Score=161.18  Aligned_cols=62  Identities=21%  Similarity=0.235  Sum_probs=34.3

Q ss_pred             CCCCccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCC
Q 040113           85 NIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF  164 (887)
Q Consensus        85 ~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~  164 (887)
                      +.+.|+|++|.|+..            .+. .++.  .+  .++|++|+|++|.+++. .|..|..+++|++|+|++|.+
T Consensus        15 ~~~~Cs~~~v~c~~~------------~l~-~ip~--~~--~~~L~~L~Ls~n~i~~~-~~~~~~~l~~L~~L~L~~N~l   76 (229)
T 3e6j_A           15 SQCSCSGTTVDCRSK------------RHA-SVPA--GI--PTNAQILYLHDNQITKL-EPGVFDSLINLKELYLGSNQL   76 (229)
T ss_dssp             TTCEEETTEEECTTS------------CCS-SCCS--CC--CTTCSEEECCSSCCCCC-CTTTTTTCTTCCEEECCSSCC
T ss_pred             CCCEEeCCEeEccCC------------CcC-ccCC--CC--CCCCCEEEcCCCccCcc-CHHHhhCccCCcEEECCCCCC
Confidence            467799999999643            121 2221  11  14555666666655543 344555555555555555555

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.70  E-value=1e-16  Score=161.75  Aligned_cols=155  Identities=19%  Similarity=0.180  Sum_probs=142.9

Q ss_pred             ccEEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCc
Q 040113          505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN  584 (887)
Q Consensus       505 L~~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~  584 (887)
                      -+.++++++.++......+..++.+++++|++.+..+..|..+++|++|++++|.+++..|..|.+++ +|++|+|++|+
T Consensus        13 ~~~v~c~~~~l~~iP~~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~-~L~~L~Ls~N~   91 (220)
T 2v9t_B           13 NNIVDCRGKGLTEIPTNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLR-SLNSLVLYGNK   91 (220)
T ss_dssp             TTEEECTTSCCSSCCSSCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCS-SCCEEECCSSC
T ss_pred             CCEEEcCCCCcCcCCCccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCc-CCCEEECCCCc
Confidence            46789999999877666678999999999999988888899999999999999999988899999998 79999999999


Q ss_pred             ccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCccccc
Q 040113          585 FFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGI  660 (887)
Q Consensus       585 l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  660 (887)
                      +++..+..|..+++|++|++++|++++..|..|..+++|++|+|++|++++..+..|..+++|++|++++|++...
T Consensus        92 l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  167 (220)
T 2v9t_B           92 ITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICD  167 (220)
T ss_dssp             CCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECS
T ss_pred             CCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCC
Confidence            9988888899999999999999999999999999999999999999999999888899999999999999998753

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.70  E-value=5.1e-17  Score=177.55  Aligned_cols=179  Identities=23%  Similarity=0.218  Sum_probs=143.0

Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccCChhhh-CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC-KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF  585 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~~~~~~-~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l  585 (887)
                      .++++++.++......+..++.|++++|++.+..+..+. .+++|+.|+|++|+|++..+..|..++ +|++|+|++|++
T Consensus        22 ~l~c~~~~l~~iP~~~~~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~-~L~~L~Ls~N~l  100 (361)
T 2xot_A           22 ILSCSKQQLPNVPQSLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP-NLRYLDLSSNHL  100 (361)
T ss_dssp             EEECCSSCCSSCCSSCCTTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCC
T ss_pred             EEEeCCCCcCccCccCCCCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC-CCCEEECCCCcC
Confidence            444444444443333345566777777777777777776 899999999999999988888899888 799999999999


Q ss_pred             cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccc---cCCCCCCEEEccCCcccccCC
Q 040113          586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWL---GTLPNLTVLILQSNKFYGIIR  662 (887)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~---~~l~~L~~L~L~~N~l~~~~~  662 (887)
                      ++..+..|..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|   ..+++|+.|+|++|++++..+
T Consensus       101 ~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~  180 (361)
T 2xot_A          101 HTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPL  180 (361)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCH
T ss_pred             CcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCH
Confidence            98888889999999999999999999889999999999999999999998866666   568999999999999987643


Q ss_pred             CCccccCCCC--CCEEEcCCCcCcccCC
Q 040113          663 EPRIDCGFSK--LRIIDLSNNRFTGKLP  688 (887)
Q Consensus       663 ~~~~~~~l~~--L~~L~Ls~N~l~~~ip  688 (887)
                      ..+  ..++.  ++.|++++|++.+...
T Consensus       181 ~~~--~~l~~~~l~~l~l~~N~~~C~C~  206 (361)
T 2xot_A          181 TDL--QKLPAWVKNGLYLHNNPLECDCK  206 (361)
T ss_dssp             HHH--HHSCHHHHTTEECCSSCEECCHH
T ss_pred             HHh--hhccHhhcceEEecCCCccCCcC
Confidence            332  44555  4789999999987654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.68  E-value=4.1e-18  Score=202.58  Aligned_cols=220  Identities=21%  Similarity=0.187  Sum_probs=89.6

Q ss_pred             CHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCccccceEecCCCCcEEEEEcCCCccccccc
Q 040113           39 HDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSIN  118 (887)
Q Consensus        39 ~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~  118 (887)
                      .+.++++|+++.........               .....|...  ....+.|.++.++.  ++++.|+|.++.+.....
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~---------------~~~~~~~~~--~~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~~~  190 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKT---------------AKKQQPTGD--STPSGTATNSAVST--PLTPKIELFANGKDEANQ  190 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHT---------------TC-------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccC---------------cccCCCcCC--CCccccCCCceecC--CccceEEeeCCCCCcchh
Confidence            45678899999877533221               123456542  34557898888764  589999999887765322


Q ss_pred             CCcccccCCCCCeEECCCCCCCCC--------CCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCC
Q 040113          119 SSSSLFKLVHLEWLNLAFNDFKSS--------EIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYG  190 (887)
Q Consensus       119 ~~~~l~~l~~L~~L~L~~n~~~~~--------~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~  190 (887)
                         .     .|+.++|+.+.+.+.        ..|..+..+++|++|+|++|.+. .+|..+.++++|++|+|++|    
T Consensus       191 ---~-----~l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N----  257 (727)
T 4b8c_D          191 ---A-----LLQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGN----  257 (727)
T ss_dssp             ---------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTS----
T ss_pred             ---h-----HhhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCC----
Confidence               2     244444555444321        12444555556666666665553 45544445555555555544    


Q ss_pred             ccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcc
Q 040113          191 LELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGEL  270 (887)
Q Consensus       191 l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~  270 (887)
                                                .++ .+|..++.+++|++|+|++|.++ .+|..|..+++|++|+|++|.+. .+
T Consensus       258 --------------------------~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~l  308 (727)
T 4b8c_D          258 --------------------------SLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVT-TL  308 (727)
T ss_dssp             --------------------------CCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCC-CC
T ss_pred             --------------------------cCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCC-cc
Confidence                                      444 44555555666666666666665 44556666666666666666664 45


Q ss_pred             hhhccCCCCCCEEEccCCCCCCccchhhhCCC-CCCEEEccCCcCCCCCC
Q 040113          271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLV-SLEELDLSFNKLSGEFP  319 (887)
Q Consensus       271 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~-~L~~L~L~~n~l~~~~~  319 (887)
                      |..|+++++|++|+|++|.+++.+|..+..+. .+..+++++|.+++.+|
T Consensus       309 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p  358 (727)
T 4b8c_D          309 PWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLP  358 (727)
T ss_dssp             CSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCC
T ss_pred             ChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCc
Confidence            55566666666666666666666665554332 11234566666665554

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.68  E-value=2.4e-16  Score=182.49  Aligned_cols=191  Identities=24%  Similarity=0.262  Sum_probs=121.8

Q ss_pred             CCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCC
Q 040113          127 VHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLS  206 (887)
Q Consensus       127 ~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~  206 (887)
                      ..+..+++..+.+.+.   ..+..+++|++|++++|.+.. +| .+..+++|++|+|++|.+..+.       . +..++
T Consensus        21 ~~l~~l~l~~~~i~~~---~~~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~-------~-l~~l~   87 (605)
T 1m9s_A           21 AETIKDNLKKKSVTDA---VTQNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-------P-LTNLK   87 (605)
T ss_dssp             HHHHHHHTTCSCTTSE---ECHHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCG-------G-GGGCT
T ss_pred             HHHHHHhccCCCcccc---cchhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCCh-------h-hccCC
Confidence            3455566676666543   235677888888888888743 44 4777888888888887754332       1 66777


Q ss_pred             CCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEcc
Q 040113          207 NLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS  286 (887)
Q Consensus       207 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~  286 (887)
                      +|++|+|++|.+.+.  ..+..+++|++|+|++|.+.+.  ..+..+++|+.|+|++|.+.+.  ..++.+++|+.|+|+
T Consensus        88 ~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls  161 (605)
T 1m9s_A           88 NLGWLFLDENKIKDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLE  161 (605)
T ss_dssp             TCCEEECCSSCCCCC--TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECC
T ss_pred             CCCEEECcCCCCCCC--hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECc
Confidence            777777777776652  2466667777777777766642  3466666677777766666544  456666666666666


Q ss_pred             CCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCC
Q 040113          287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSG  342 (887)
Q Consensus       287 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~  342 (887)
                      +|.+.+..|  +..+++|++|+|++|++++ ++ .  +..+++|+.|+|++|.+.+
T Consensus       162 ~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~-l~-~--l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          162 DNQISDIVP--LAGLTKLQNLYLSKNHISD-LR-A--LAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             SSCCCCCGG--GTTCTTCCEEECCSSCCCB-CG-G--GTTCTTCSEEECCSEEEEC
T ss_pred             CCcCCCchh--hccCCCCCEEECcCCCCCC-Ch-H--HccCCCCCEEEccCCcCcC
Confidence            666665444  6666666666666666653 22 2  5556666666666666553

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.67  E-value=5.7e-16  Score=157.35  Aligned_cols=137  Identities=23%  Similarity=0.219  Sum_probs=105.8

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|++|++++|.+++..|..+..++ +|++|+|++|++.+..+..|..+++|++|++++|++++..+..|..+++|++|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~-~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLI-NLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCcc-CCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEe
Confidence            6777778888877777777777776 688888888887766666777788888888888888877677777888888888


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCC
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP  688 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip  688 (887)
                      |++|+++. +|..+..+++|++|+|++|++.+..+..+  ..+++|+.|++++|++.+..+
T Consensus       119 Ls~N~l~~-lp~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~c~c~  176 (229)
T 3e6j_A          119 MCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAF--DRLSSLTHAYLFGNPWDCECR  176 (229)
T ss_dssp             CCSSCCCS-CCTTGGGCTTCSEEECCSSCCCCCCTTTT--TTCTTCCEEECTTSCBCTTBG
T ss_pred             ccCCcccc-cCcccccCCCCCEEECCCCcCCccCHHHH--hCCCCCCEEEeeCCCccCCcc
Confidence            88888874 46777888888888888888877655443  667888888888888887665

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.67  E-value=1.4e-16  Score=157.77  Aligned_cols=110  Identities=23%  Similarity=0.380  Sum_probs=57.3

Q ss_pred             hcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCCccchhhhCCCCC
Q 040113          226 LANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNLVSL  304 (887)
Q Consensus       226 l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l~~L  304 (887)
                      +..+++|++|++++|.+++..+..++.+++|++|++++|.+++..|..++.+++|++|++++|. ++ .+| .+..+++|
T Consensus        84 l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L  161 (197)
T 4ezg_A           84 ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPEL  161 (197)
T ss_dssp             GTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSC
T ss_pred             hhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCC
Confidence            4444455555555555544444455555555555555555555455555555555555555555 33 333 45556666


Q ss_pred             CEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113          305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS  341 (887)
Q Consensus       305 ~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  341 (887)
                      ++|++++|++++ ++ .  +..+++|++|++++|++.
T Consensus       162 ~~L~l~~n~i~~-~~-~--l~~l~~L~~L~l~~N~i~  194 (197)
T 4ezg_A          162 KSLNIQFDGVHD-YR-G--IEDFPKLNQLYAFSQTIG  194 (197)
T ss_dssp             CEEECTTBCCCC-CT-T--GGGCSSCCEEEECBC---
T ss_pred             CEEECCCCCCcC-hH-H--hccCCCCCEEEeeCcccC
Confidence            666666665553 22 2  455566666666666553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.66  E-value=7.4e-17  Score=167.55  Aligned_cols=100  Identities=19%  Similarity=0.205  Sum_probs=59.8

Q ss_pred             cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113          574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ  653 (887)
Q Consensus       574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  653 (887)
                      ++..+++++|.+++..  .+..+++|+.|++++|.++. ++ .+..+++|++|++++|++++..+  +..+++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            4666667777666443  35566677777777776663 33 46666667777777776666543  6666666666666


Q ss_pred             CCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113          654 SNKFYGIIREPRIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       654 ~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      +|++.+..+.    .. ++|+.|++++|+++
T Consensus        94 ~N~l~~l~~~----~~-~~L~~L~L~~N~l~  119 (263)
T 1xeu_A           94 RNRLKNLNGI----PS-ACLSRLFLDNNELR  119 (263)
T ss_dssp             SSCCSCCTTC----CC-SSCCEEECCSSCCS
T ss_pred             CCccCCcCcc----cc-CcccEEEccCCccC
Confidence            6666553211    11 55555555555554

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.66  E-value=2.4e-16  Score=155.27  Aligned_cols=113  Identities=22%  Similarity=0.350  Sum_probs=87.5

Q ss_pred             CCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 040113          746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN  825 (887)
Q Consensus       746 ~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~  825 (887)
                      .+.|+.|+|++|+|++.+|..|+.+++|++|+|++|++++..|..|+++++|++|+|++|++++.+|..+..+++|++|+
T Consensus        53 l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  132 (192)
T 1w8a_A           53 LPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLN  132 (192)
T ss_dssp             CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEE
T ss_pred             CCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEE
Confidence            35678888888888888888888888899999999999888888888888999999999999888888888888899999


Q ss_pred             cccCcccccCCCCCcCcc-ccccccCCCcCCCCCC
Q 040113          826 VSDNYLTGPIPQGRQFAT-FDNSSFESNSGLCGRP  859 (887)
Q Consensus       826 ls~N~l~g~iP~~~~~~~-~~~~~~~~n~~lcg~~  859 (887)
                      +++|+++|..|-. .+.. +....+.++...|+.|
T Consensus       133 L~~N~l~c~c~l~-~~~~~l~~~~~~~~~~~C~~P  166 (192)
T 1w8a_A          133 LASNPFNCNCHLA-WFAEWLRKKSLNGGAARCGAP  166 (192)
T ss_dssp             CTTCCBCCSGGGH-HHHHHHHHHCCSGGGCBBCSS
T ss_pred             eCCCCccCcCcch-HHHHHHHHcCCCCCCCCCCCC
Confidence            9999888766532 1111 2233455565667655

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=2.1e-18  Score=198.63  Aligned_cols=203  Identities=22%  Similarity=0.160  Sum_probs=109.0

Q ss_pred             ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCC-------------CCccCCccccCCCCCcEEE-ccCCCCC
Q 040113          124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSS-------------FFGQIPSEILELVNLVSLD-LSLNSGY  189 (887)
Q Consensus       124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~-------------~~~~~p~~l~~l~~L~~L~-l~~n~~~  189 (887)
                      ..+++|+.|+|++|.+.  .+|+.+++|++|+.|++++|.             ..+.+|..++.+++|+.|+ ++.|.+.
T Consensus       346 ~~~~~L~~L~Ls~n~L~--~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~  423 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST--VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD  423 (567)
T ss_dssp             STTTTSSSCCCCHHHHH--HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH
T ss_pred             ccCccceeccCChhhHH--hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc
Confidence            44566666666666665  256666666666666665543             3334444444455555544 3332210


Q ss_pred             CccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCc
Q 040113          190 GLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE  269 (887)
Q Consensus       190 ~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~  269 (887)
                      .                 |+.+.+++|.+....+      ..|++|++++|.+++ +|. ++.+++|++|++++|.++ .
T Consensus       424 ~-----------------L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~  477 (567)
T 1dce_A          424 D-----------------LRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-A  477 (567)
T ss_dssp             H-----------------HHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-C
T ss_pred             h-----------------hhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-c
Confidence            0                 0011111111111100      246666666666664 343 666666666666666665 5


Q ss_pred             chhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCC-CchhhccCCCCccEEEccCCCCCCccccc-
Q 040113          270 LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEF-PWSIVIGNFTQLQSLDFTSNKFSGELHAS-  347 (887)
Q Consensus       270 ~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~-  347 (887)
                      +|..++++++|++|+|++|.+++ +| .++.+++|++|+|++|++++.. |..  ++.+++|+.|++++|.+++..+.. 
T Consensus       478 lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N~l~~~~~~~~  553 (567)
T 1dce_A          478 LPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGNSLCQEEGIQE  553 (567)
T ss_dssp             CCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTSGGGGSSSCTT
T ss_pred             cchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCCcCCCCccHHH
Confidence            56666666666666666666664 44 5666666666666666666544 554  666666666666666665443321 


Q ss_pred             --cCCCCCccEEE
Q 040113          348 --IGNLRSLEVLA  358 (887)
Q Consensus       348 --l~~l~~L~~L~  358 (887)
                        +..+++|+.|+
T Consensus       554 ~l~~~lp~L~~L~  566 (567)
T 1dce_A          554 RLAEMLPSVSSIL  566 (567)
T ss_dssp             HHHHHCTTCSEEE
T ss_pred             HHHHHCcccCccC
Confidence              22356666664

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.66  E-value=8e-19  Score=202.11  Aligned_cols=86  Identities=31%  Similarity=0.426  Sum_probs=52.6

Q ss_pred             ceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccC-CccccCCCCCCeeec
Q 040113          748 ILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQI-PQQLVELTFLEFFNV  826 (887)
Q Consensus       748 ~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~-p~~l~~L~~L~~L~l  826 (887)
                      .|+.|+|++|.|+ .+|..++.+++|+.|+|++|++++ +| .++++++|+.|+|++|++++.+ |..+..+++|++|++
T Consensus       464 ~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L  540 (567)
T 1dce_A          464 LVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNL  540 (567)
T ss_dssp             TCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEEC
T ss_pred             cCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEe
Confidence            4555666666665 555566666666666666666664 44 5666666666666666666555 666666666666666


Q ss_pred             ccCcccccCC
Q 040113          827 SDNYLTGPIP  836 (887)
Q Consensus       827 s~N~l~g~iP  836 (887)
                      ++|++++.+|
T Consensus       541 ~~N~l~~~~~  550 (567)
T 1dce_A          541 QGNSLCQEEG  550 (567)
T ss_dssp             TTSGGGGSSS
T ss_pred             cCCcCCCCcc
Confidence            6666665544

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.65  E-value=5.2e-16  Score=153.73  Aligned_cols=154  Identities=17%  Similarity=0.273  Sum_probs=97.3

Q ss_pred             hcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCE
Q 040113          203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKK  282 (887)
Q Consensus       203 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~  282 (887)
                      +.+++|++|++++|.+. .++ .+..+++|++|++++|.+..  +..+..+++|++|++++|.+++..+..++.+++|++
T Consensus        41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~--~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~  116 (197)
T 4ezg_A           41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATN--YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL  116 (197)
T ss_dssp             HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSC--CGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred             hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCc--chhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence            34455566666666555 233 46666777777777775542  235677777777777777777666667777777777


Q ss_pred             EEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCC
Q 040113          283 LDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRC  362 (887)
Q Consensus       283 L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  362 (887)
                      |++++|.+++..+..++.+++|++|++++|...+.++ .  +..+++|+.|++++|.+++ ++ .+..+++|++|++++|
T Consensus       117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~--l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N  191 (197)
T 4ezg_A          117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-P--LKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQ  191 (197)
T ss_dssp             EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-G--GGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC
T ss_pred             EEecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH-h--hcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCc
Confidence            7777777776667777777777777777776333444 2  5666667777777766654 22 4555566666666666


Q ss_pred             cCC
Q 040113          363 NFS  365 (887)
Q Consensus       363 ~i~  365 (887)
                      ++.
T Consensus       192 ~i~  194 (197)
T 4ezg_A          192 TIG  194 (197)
T ss_dssp             ---
T ss_pred             ccC
Confidence            553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.65  E-value=2.2e-16  Score=163.89  Aligned_cols=124  Identities=20%  Similarity=0.271  Sum_probs=62.6

Q ss_pred             cCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEE
Q 040113          547 LDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL  626 (887)
Q Consensus       547 l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  626 (887)
                      +.++..+++++|.+++..  .+..++ +|++|++++|+++.. + .+..+++|++|++++|++++..+  +.++++|++|
T Consensus        18 l~~l~~l~l~~~~i~~~~--~~~~l~-~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L   90 (263)
T 1xeu_A           18 LANAVKQNLGKQSVTDLV--SQKELS-GVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL   90 (263)
T ss_dssp             HHHHHHHHHTCSCTTSEE--CHHHHT-TCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred             HHHHHHHHhcCCCccccc--chhhcC-cCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence            334455555555554322  344444 456666666655432 2 45555556666666665554433  5555566666


Q ss_pred             eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113          627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      ++++|++++..+  +.. ++|++|++++|++++..  .  ...+++|+.|++++|+++
T Consensus        91 ~L~~N~l~~l~~--~~~-~~L~~L~L~~N~l~~~~--~--l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           91 SVNRNRLKNLNG--IPS-ACLSRLFLDNNELRDTD--S--LIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             ECCSSCCSCCTT--CCC-SSCCEEECCSSCCSBSG--G--GTTCTTCCEEECTTSCCC
T ss_pred             ECCCCccCCcCc--ccc-CcccEEEccCCccCCCh--h--hcCcccccEEECCCCcCC
Confidence            666665555422  122 55566666666555431  1  134445555555555443

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.64  E-value=7.8e-17  Score=191.59  Aligned_cols=93  Identities=22%  Similarity=0.262  Sum_probs=44.7

Q ss_pred             CccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccC
Q 040113          590 PNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCG  669 (887)
Q Consensus       590 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~  669 (887)
                      +..|..+..|+.|+|++|.+. .+|..+.++++|++|+|++|+|+ .+|..|..+++|++|+|++|+++ .+|..+  ..
T Consensus       217 ~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~  291 (727)
T 4b8c_D          217 KDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAEL--GS  291 (727)
T ss_dssp             -----CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSG--GG
T ss_pred             hhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhh--cC
Confidence            444555555555555555555 33444445555555555555555 33445555555555555555555 233333  44


Q ss_pred             CCCCCEEEcCCCcCcccCC
Q 040113          670 FSKLRIIDLSNNRFTGKLP  688 (887)
Q Consensus       670 l~~L~~L~Ls~N~l~~~ip  688 (887)
                      +++|++|+|++|.++ .+|
T Consensus       292 l~~L~~L~L~~N~l~-~lp  309 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT-TLP  309 (727)
T ss_dssp             GTTCSEEECCSSCCC-CCC
T ss_pred             CCCCCEEECCCCCCC-ccC
Confidence            555555555555553 444

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.61  E-value=3.9e-15  Score=146.56  Aligned_cols=137  Identities=20%  Similarity=0.256  Sum_probs=115.7

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCc-cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN-TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG  629 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  629 (887)
                      +.+++++|.++ .+|..+..   ++++|++++|++++..+. .|..+++|++|++++|++++..|..|.++++|++|+|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~---~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL---HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT---TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CEEEcCCCCcC-cCccCCCC---CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            67888888885 66765543   689999999998877764 48889999999999999998888889999999999999


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhh
Q 040113          630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFL  693 (887)
Q Consensus       630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~  693 (887)
                      +|++++..+..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+.++...+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~l~c~c~l~~~~  148 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLAWFA  148 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGHHHH
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHh--hcCCCCCEEEeCCCCccCcCcchHHH
Confidence            999999888889999999999999999998877765  67889999999999999887755443

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.55  E-value=3.7e-14  Score=139.53  Aligned_cols=137  Identities=23%  Similarity=0.268  Sum_probs=113.9

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      +.+++++|.++ .+|..+.   .+|++|++++|+++ .+|..|..+++|++|++++|++++..+..|.++++|++|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP---RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC---TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC---CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            57888888887 5666543   37999999999987 5667888999999999999999988888899999999999999


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLC  694 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~  694 (887)
                      |++++..+..|..+++|++|+|++|++++..+..+  ..+++|+.|++++|++.+.....++..
T Consensus        88 N~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~--~~l~~L~~L~L~~N~~~C~c~l~~l~~  149 (193)
T 2wfh_A           88 NRLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAF--NDLSALSHLAIGANPLYCDCNMQWLSD  149 (193)
T ss_dssp             SCCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTT--TTCTTCCEEECCSSCEECSGGGHHHHH
T ss_pred             CccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhh--hcCccccEEEeCCCCeecCCcCHHHHH
Confidence            99999988889999999999999999987765544  678899999999999987766555543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.52  E-value=4.4e-14  Score=135.90  Aligned_cols=134  Identities=29%  Similarity=0.306  Sum_probs=68.0

Q ss_pred             CCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113          206 SNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD  284 (887)
Q Consensus       206 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  284 (887)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+.+.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            45555555555554 44454455555555555555555543  4455555555555555555544554455555555555


Q ss_pred             ccCCCCCCcc-chhhhCCCCCCEEEccCCcCCCCCCc-hhhccCCCCccEEEccCCCCC
Q 040113          285 LSINNLSGEL-PTSIQNLVSLEELDLSFNKLSGEFPW-SIVIGNFTQLQSLDFTSNKFS  341 (887)
Q Consensus       285 L~~n~l~~~~-~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~~n~l~  341 (887)
                      +++|.+++.. +..+..+++|++|++++|.+++..+. ...+..+++|+.|++++|.+.
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            5555555321 14455555555555555555432220 001444555555555555443

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.51  E-value=2.2e-14  Score=138.01  Aligned_cols=135  Identities=19%  Similarity=0.195  Sum_probs=92.2

Q ss_pred             cCCCCeEEcCCCccC-CCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113          547 LDSLEILVLSHNNLS-GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF  625 (887)
Q Consensus       547 l~~L~~L~Ls~n~l~-~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  625 (887)
                      .++|+.|++++|.++ +.+|..+..++ +|++|++++|.+++.  ..+..+++|++|++++|++++.+|..+..+++|++
T Consensus        23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~-~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~   99 (168)
T 2ell_A           23 PAAVRELVLDNCKSNDGKIEGLTAEFV-NLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH   99 (168)
T ss_dssp             TTSCSEEECCSCBCBTTBCSSCCGGGG-GCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred             cccCCEEECCCCCCChhhHHHHHHhCC-CCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence            356777777777776 56666666666 577777777777655  56667777777777777777666666666777777


Q ss_pred             EeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCC-ccccCCCCCCEEEcCCCcCc
Q 040113          626 LDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREP-RIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       626 L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~-~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      |++++|++++... ..+..+++|++|++++|++++..+.. .....+++|+.|++++|.+.
T Consensus       100 L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            7777777776532 56777777777777777777654300 12256777777777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.51  E-value=3.9e-14  Score=133.22  Aligned_cols=129  Identities=27%  Similarity=0.284  Sum_probs=78.4

Q ss_pred             CCCCEEEccCCCCC-CCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113          206 SNLETLDLGYVSIR-STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD  284 (887)
Q Consensus       206 ~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  284 (887)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+++.  ..+..+++|++|++++|.+++.+|..++.+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            45666666666665 45565566666667777766666654  5566666666666666666655666666666666666


Q ss_pred             ccCCCCCCc-cchhhhCCCCCCEEEccCCcCCCCCCc-hhhccCCCCccEEEcc
Q 040113          285 LSINNLSGE-LPTSIQNLVSLEELDLSFNKLSGEFPW-SIVIGNFTQLQSLDFT  336 (887)
Q Consensus       285 L~~n~l~~~-~~~~l~~l~~L~~L~L~~n~l~~~~~~-~~~~~~l~~L~~L~L~  336 (887)
                      +++|.+++. .+..++.+++|++|++++|.+++..+. ...++.+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            666666642 235566666666666666666543330 0115556666666554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.51  E-value=4.9e-14  Score=138.64  Aligned_cols=127  Identities=22%  Similarity=0.354  Sum_probs=105.1

Q ss_pred             eeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccC
Q 040113          732 KMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQI  811 (887)
Q Consensus       732 ~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~  811 (887)
                      .+...+....+..+++.++.|+|++|.|+ .+|..|.++++|++|+|++|.+++..|..|.++++|++|+|++|++++..
T Consensus        16 ~~~~~~l~~ip~~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~   94 (193)
T 2wfh_A           16 RCSNKGLKVLPKGIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIP   94 (193)
T ss_dssp             ECTTSCCSSCCSCCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCC
T ss_pred             EcCCCCCCcCCCCCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeC
Confidence            33333333344456788999999999998 77899999999999999999999998999999999999999999999999


Q ss_pred             CccccCCCCCCeeecccCcccccCCCC-CcCccccccccCCCcCCCCCC
Q 040113          812 PQQLVELTFLEFFNVSDNYLTGPIPQG-RQFATFDNSSFESNSGLCGRP  859 (887)
Q Consensus       812 p~~l~~L~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~~n~~lcg~~  859 (887)
                      |..|..+++|++|++++|++++..|.. ..+..+....+.+|+..|++.
T Consensus        95 ~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~  143 (193)
T 2wfh_A           95 PRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN  143 (193)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred             HHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence            999999999999999999999644422 234455666778888888764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.51  E-value=1e-13  Score=134.53  Aligned_cols=134  Identities=20%  Similarity=0.225  Sum_probs=114.2

Q ss_pred             CCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      +.+.++++++.++ .+|..+.   ++|+.|++++|++++..+..|..+++|++|++++|++++..+..|.++++|++|++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~~---~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l   83 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGIP---SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYL   83 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             CCCEEEecCCCCc-cCCCCCC---CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEEC
Confidence            3567888888887 4554443   37999999999998887778889999999999999999877778899999999999


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCC
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLP  688 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip  688 (887)
                      ++|++++..+..+..+++|++|++++|++++..+..+  ..+++|+.|++++|++.+.+|
T Consensus        84 ~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~--~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           84 HENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIF--DRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTT--TTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCCccccCHHHhhCCcccCEEECcCCcceEeCHHHh--cCCcccCEEEecCCCeeccCc
Confidence            9999999888888999999999999999987755443  678999999999999998776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.51  E-value=5.3e-14  Score=151.57  Aligned_cols=245  Identities=16%  Similarity=0.121  Sum_probs=165.1

Q ss_pred             cCCCCeEEcCCCccC--CCCCCcccccCCcceEEecCCCcccccCCccccC--------CCcccEEEccCCeeeeeCCcc
Q 040113          547 LDSLEILVLSHNNLS--GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMK--------ESRLGMIDLSHNLFQGRIPRS  616 (887)
Q Consensus       547 l~~L~~L~Ls~n~l~--~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~--------l~~L~~L~Ls~N~l~~~~~~~  616 (887)
                      +++|+.|||++|++.  ...+..   ++ .+..+.+..|.+   .+.+|.+        +++|+.+++.+ .++.+.+.+
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~---~~-~~~~~~~~~~~I---~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~a  119 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGT---YP-NGKFYIYMANFV---PAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAA  119 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSS---SG-GGCCEEECTTEE---CTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTT
T ss_pred             hccCeEEecCcceeEEecCcccc---cc-cccccccccccc---CHHHhcccccccccccCCCcEEECCc-cccchhHHH
Confidence            778899999998887  222222   12 234455555533   3456666        88899999988 788777788


Q ss_pred             ccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcc----cccCCCCccccCCCCCC-EEEcCCCcCcccCChhh
Q 040113          617 LINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF----YGIIREPRIDCGFSKLR-IIDLSNNRFTGKLPSKS  691 (887)
Q Consensus       617 l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l----~~~~~~~~~~~~l~~L~-~L~Ls~N~l~~~ip~~~  691 (887)
                      |.+|++|+.+++.+|.+..+.+..|..+.++..+.+..+..    ...  ....+.++..|+ .+++...   +.++...
T Consensus       120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i--~~~~f~~~~~L~~~i~~~~~---~~l~~~~  194 (329)
T 3sb4_A          120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRW--EHFAFIEGEPLETTIQVGAM---GKLEDEI  194 (329)
T ss_dssp             TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTT--TTSCEEESCCCEEEEEECTT---CCHHHHH
T ss_pred             hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccc--cccccccccccceeEEecCC---CcHHHHH
Confidence            88999999999999988888888888877777776655332    111  111224455665 4555432   2334333


Q ss_pred             hhc---cccchhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhh
Q 040113          692 FLC---WNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIA  768 (887)
Q Consensus       692 ~~~---~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~  768 (887)
                      +..   ...+..+...+.-+.      ..                     ...+....+.|+.|+|++|+++...+..|.
T Consensus       195 ~~~~~~~~~~~~l~~~~~l~~------~~---------------------~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~  247 (329)
T 3sb4_A          195 MKAGLQPRDINFLTIEGKLDN------AD---------------------FKLIRDYMPNLVSLDISKTNATTIPDFTFA  247 (329)
T ss_dssp             HHTTCCGGGCSEEEEEECCCH------HH---------------------HHHHHHHCTTCCEEECTTBCCCEECTTTTT
T ss_pred             hhcccCccccceEEEeeeecH------HH---------------------HHHHHHhcCCCeEEECCCCCcceecHhhhh
Confidence            322   111111111100000      00                     000011156799999999999977778899


Q ss_pred             cccCCCEEeCCCCcccccCCccccCCCCCC-EEeCCCCcccccCCccccCCCCCCeeecccCcccc
Q 040113          769 NLKGLQVLNLDNNNLQGHIPSCLGNLTNLE-SLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG  833 (887)
Q Consensus       769 ~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~-~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g  833 (887)
                      ++++|+.|+|++| ++..-+.+|.++++|+ .+++.+ .++...+..|.++++|+.+++++|+++.
T Consensus       248 ~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~  311 (329)
T 3sb4_A          248 QKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITT  311 (329)
T ss_dssp             TCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCE
T ss_pred             CCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCc
Confidence            9999999999998 8877788999999999 999999 7887788999999999999999999874

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.49  E-value=5.1e-14  Score=132.42  Aligned_cols=127  Identities=24%  Similarity=0.228  Sum_probs=79.4

Q ss_pred             CCCCEEEcccCCCC-CccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEE
Q 040113          230 SSLTFLSLHSCGLQ-GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD  308 (887)
Q Consensus       230 ~~L~~L~L~~n~l~-~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  308 (887)
                      ++|++|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            56777777777776 56666667777777777777777654  5666677777777777777665666666666777777


Q ss_pred             ccCCcCCCC-CCchhhccCCCCccEEEccCCCCCCccc---cccCCCCCccEEEcc
Q 040113          309 LSFNKLSGE-FPWSIVIGNFTQLQSLDFTSNKFSGELH---ASIGNLRSLEVLAIG  360 (887)
Q Consensus       309 L~~n~l~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~---~~l~~l~~L~~L~L~  360 (887)
                      +++|++++. .+..  ++.+++|++|++++|.+++..+   ..+..+++|++|+++
T Consensus        95 ls~N~i~~~~~~~~--~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEP--LKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGG--GGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHH--HhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777666532 1122  5556666666666665554333   244445555555443

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=1.6e-13  Score=147.74  Aligned_cols=102  Identities=11%  Similarity=0.029  Sum_probs=56.3

Q ss_pred             CCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCcc-EEEccCCcCCccCCccccCCCCCC
Q 040113          301 LVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLE-VLAIGRCNFSGRIPSSLRNLTQLI  379 (887)
Q Consensus       301 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~-~L~L~~n~i~~~~~~~l~~l~~L~  379 (887)
                      +++|+++++++|+++ .++.. .|.++++|+.+++.+| ++...+..|..+++|+ .+++.+ .++...+.+|.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~-~I~~~-aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNAT-TIPDF-TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCC-EECTT-TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcc-eecHh-hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            556666666665555 23322 1555666666666655 4444445556666666 666655 44444445566666666


Q ss_pred             EEEcCCCCCccccchhhhhcCCCCCCEEE
Q 040113          380 TLDLSQNSYRGTMELDFLLVSLKNLEVLS  408 (887)
Q Consensus       380 ~L~L~~n~l~~~~~~~~~l~~l~~L~~L~  408 (887)
                      .++++.|.+.......  |.++++|+.++
T Consensus       301 ~l~l~~n~i~~I~~~a--F~~~~~L~~ly  327 (329)
T 3sb4_A          301 YVLATGDKITTLGDEL--FGNGVPSKLIY  327 (329)
T ss_dssp             EEEECSSCCCEECTTT--TCTTCCCCEEE
T ss_pred             EEEeCCCccCccchhh--hcCCcchhhhc
Confidence            6666666555444433  55566665554

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.44  E-value=5.8e-13  Score=129.20  Aligned_cols=113  Identities=21%  Similarity=0.247  Sum_probs=93.5

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEe
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLD  627 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~  627 (887)
                      ++|++|++++|++++..+..+..++ +|++|++++|++++..+..|..+++|++|++++|++++..+..+..+++|++|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLT-QLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCT-TCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcc-cccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEE
Confidence            5788888888888866666677777 688888888888877777788888889999999988877777788888999999


Q ss_pred             CCCCcCCCCCCccccCCCCCCEEEccCCcccccC
Q 040113          628 IGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII  661 (887)
Q Consensus       628 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  661 (887)
                      +++|++++..+..+..+++|++|++++|++.+..
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            9999998887777788899999999999887653

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.39  E-value=1e-14  Score=144.48  Aligned_cols=82  Identities=24%  Similarity=0.336  Sum_probs=67.5

Q ss_pred             CceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCC-ccccCCCCCCEEeCCCCcccccCCcc----------c
Q 040113          747 DILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIP-SCLGNLTNLESLDLSNNNFLGQIPQQ----------L  815 (887)
Q Consensus       747 ~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p-~~l~~L~~L~~L~Ls~N~l~~~~p~~----------l  815 (887)
                      +.|+.|++++|++++ +| .++.+++|++|++++|++++..+ ..+..+++|++|++++|++++.+|..          +
T Consensus        93 ~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~  170 (198)
T 1ds9_A           93 DTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVV  170 (198)
T ss_dssp             HHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHH
T ss_pred             CcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHH
Confidence            468889999999986 45 68889999999999999986433 46888999999999999998887764          7


Q ss_pred             cCCCCCCeeecccCccc
Q 040113          816 VELTFLEFFNVSDNYLT  832 (887)
Q Consensus       816 ~~L~~L~~L~ls~N~l~  832 (887)
                      ..+++|++||  +|.++
T Consensus       171 ~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          171 KRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHCSSCSEEC--CGGGT
T ss_pred             HhCCCcEEEC--CcccC
Confidence            8899999987  66655

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=7.4e-13  Score=127.25  Aligned_cols=106  Identities=21%  Similarity=0.234  Sum_probs=92.2

Q ss_pred             eeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113          731 LKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ  810 (887)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~  810 (887)
                      +.+........+..+++.++.|+|++|+|++..|..|+.+++|++|+|++|++++..|..|.++++|++|+|++|++++.
T Consensus        14 l~~s~n~l~~ip~~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~   93 (170)
T 3g39_A           14 VDCSGKSLASVPTGIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQLKSI   93 (170)
T ss_dssp             EECTTSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeCCCCcCccCccCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCccCEe
Confidence            33333444444445678899999999999999999999999999999999999988888899999999999999999988


Q ss_pred             CCccccCCCCCCeeecccCcccccCC
Q 040113          811 IPQQLVELTFLEFFNVSDNYLTGPIP  836 (887)
Q Consensus       811 ~p~~l~~L~~L~~L~ls~N~l~g~iP  836 (887)
                      .|..|..+++|++|++++|++++..+
T Consensus        94 ~~~~~~~l~~L~~L~L~~N~~~c~c~  119 (170)
T 3g39_A           94 PRGAFDNLKSLTHIWLLNNPWDCACS  119 (170)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred             CHHHhcCCCCCCEEEeCCCCCCCCch
Confidence            88889999999999999999997654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.39  E-value=3.9e-13  Score=130.23  Aligned_cols=137  Identities=16%  Similarity=0.139  Sum_probs=112.4

Q ss_pred             hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113          543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK  622 (887)
Q Consensus       543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  622 (887)
                      .+.++.+|+.|++++|.++. +|. +..+.++|++|++++|++++.  ..+..+++|++|++++|++++..+..+..+++
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~   89 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPD   89 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTT
T ss_pred             hcCCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCC
Confidence            35678899999999999984 454 555544799999999999886  57889999999999999999876666789999


Q ss_pred             CcEEeCCCCcCCCCCCc--cccCCCCCCEEEccCCcccccCCCC--ccccCCCCCCEEEcCCCcCcc
Q 040113          623 LEFLDIGDNQIRDIFPS--WLGTLPNLTVLILQSNKFYGIIREP--RIDCGFSKLRIIDLSNNRFTG  685 (887)
Q Consensus       623 L~~L~L~~N~l~~~~~~--~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~l~~L~~L~Ls~N~l~~  685 (887)
                      |++|++++|+++.. |.  .+..+++|+.|++++|++... +..  .....+++|+.||+++|....
T Consensus        90 L~~L~L~~N~i~~~-~~~~~l~~l~~L~~L~l~~N~i~~~-~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           90 LTELILTNNSLVEL-GDLDPLASLKSLTYLCILRNPVTNK-KHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             CCEEECCSCCCCCG-GGGGGGGGCTTCCEEECCSSGGGGS-TTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             CCEEECCCCcCCcc-hhhHhhhcCCCCCEEEecCCCCCCc-HhHHHHHHHHCCccceeCCCcCCHHH
Confidence            99999999999765 44  788999999999999999865 221  013678999999999998763

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.36  E-value=2.3e-11  Score=133.70  Aligned_cols=224  Identities=13%  Similarity=0.105  Sum_probs=144.3

Q ss_pred             hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113          542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS  621 (887)
Q Consensus       542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  621 (887)
                      .+|.++ +|+.+.+.++ ++.....+|.++  +|+.+.+.+ .+..+.+.+|.++.+|+.+++++|+++.+...+|. +.
T Consensus       130 ~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~  203 (401)
T 4fdw_A          130 DAFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YA  203 (401)
T ss_dssp             TTTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TC
T ss_pred             hhcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ec
Confidence            445554 5777777665 554445555553  477777765 56666666777777777777777777766556665 46


Q ss_pred             CCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhc
Q 040113          622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIV  701 (887)
Q Consensus       622 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l  701 (887)
                      +|+.+.+..+ +..+....|..+++|+.+++.+| ++.+....+  .+ .+|+.+++.+ .++ .|+...|..       
T Consensus       204 ~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF--~~-~~L~~i~lp~-~i~-~I~~~aF~~-------  269 (401)
T 4fdw_A          204 GIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAF--RE-SGITTVKLPN-GVT-NIASRAFYY-------  269 (401)
T ss_dssp             CCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTT--TT-CCCSEEEEET-TCC-EECTTTTTT-------
T ss_pred             ccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccc--cc-CCccEEEeCC-Ccc-EEChhHhhC-------
Confidence            7777777633 66666667777777777777654 333333332  22 5666666632 232 343333322       


Q ss_pred             ccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCC-----ccChhhhhcccCCCEE
Q 040113          702 NTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFD-----GMIPTSIANLKGLQVL  776 (887)
Q Consensus       702 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~-----~~ip~~l~~l~~L~~L  776 (887)
                                                                  ...|+.+++.+|.+.     ..-+..|.++++|+.+
T Consensus       270 --------------------------------------------c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l  305 (401)
T 4fdw_A          270 --------------------------------------------CPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARF  305 (401)
T ss_dssp             --------------------------------------------CTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEE
T ss_pred             --------------------------------------------CCCCCEEEeCCccccCCcccEECHHHhhCCccCCeE
Confidence                                                        345677777776654     3455677888888888


Q ss_pred             eCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCccc
Q 040113          777 NLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLT  832 (887)
Q Consensus       777 ~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~  832 (887)
                      +|. +.++..-..+|.++++|+.++|..| ++..-+..|.++ +|+.+++++|.+.
T Consensus       306 ~l~-~~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~  358 (401)
T 4fdw_A          306 EIP-ESIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPP  358 (401)
T ss_dssp             CCC-TTCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCC
T ss_pred             EeC-CceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCc
Confidence            888 4477666778888888888888555 666667778888 8888888888665

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=2e-12  Score=124.64  Aligned_cols=105  Identities=20%  Similarity=0.228  Sum_probs=90.3

Q ss_pred             eeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCccccc
Q 040113          731 LKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQ  810 (887)
Q Consensus       731 ~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~  810 (887)
                      +.+........+..+++.|+.|+|++|+|++.+|..|+++++|++|+|++|++++..+..|+++++|+.|+|++|++++.
T Consensus        17 l~~~~n~l~~iP~~~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l   96 (174)
T 2r9u_A           17 VNCQNIRLASVPAGIPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSI   96 (174)
T ss_dssp             EECCSSCCSSCCSCCCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCC
T ss_pred             EEeCCCCCCccCCCcCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCcccee
Confidence            33344444344445678899999999999999999999999999999999999987777789999999999999999987


Q ss_pred             CCccccCCCCCCeeecccCcccccC
Q 040113          811 IPQQLVELTFLEFFNVSDNYLTGPI  835 (887)
Q Consensus       811 ~p~~l~~L~~L~~L~ls~N~l~g~i  835 (887)
                      .+..+..+++|++|++++|++....
T Consensus        97 ~~~~~~~l~~L~~L~L~~N~~~c~~  121 (174)
T 2r9u_A           97 PRGAFDNLKSLTHIYLYNNPWDCEC  121 (174)
T ss_dssp             CTTTTTTCTTCSEEECCSSCBCTTB
T ss_pred             CHHHhccccCCCEEEeCCCCccccc
Confidence            7777999999999999999998643

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.35  E-value=1.8e-11  Score=134.43  Aligned_cols=227  Identities=11%  Similarity=0.099  Sum_probs=164.1

Q ss_pred             hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113          542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS  621 (887)
Q Consensus       542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  621 (887)
                      .+|.++ +|+.+.+.+ .+....+.+|.++. +|+.+++.+|+++.+...+|. ..+|+.+.+..+ +..+...+|.+|+
T Consensus       152 ~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~-~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~  226 (401)
T 4fdw_A          152 MAFFNS-TVQEIVFPS-TLEQLKEDIFYYCY-NLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTS  226 (401)
T ss_dssp             TTTTTC-CCCEEECCT-TCCEECSSTTTTCT-TCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCT
T ss_pred             HhcCCC-CceEEEeCC-CccEehHHHhhCcc-cCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCC
Confidence            455553 588888875 55555666777777 688888888888777777776 478888888754 6667777888888


Q ss_pred             CCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc----ccCChhhhhcccc
Q 040113          622 KLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT----GKLPSKSFLCWNA  697 (887)
Q Consensus       622 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~----~~ip~~~~~~~~~  697 (887)
                      +|+.+++..| ++.+....|.. .+|+.+.+. +.+..+....+  .++++|+.+++.+|.+.    ..++...|..   
T Consensus       227 ~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF--~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~---  298 (401)
T 4fdw_A          227 QLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAF--YYCPELAEVTTYGSTFNDDPEAMIHPYCLEG---  298 (401)
T ss_dssp             TCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTT--TTCTTCCEEEEESSCCCCCTTCEECTTTTTT---
T ss_pred             CCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHh--hCCCCCCEEEeCCccccCCcccEECHHHhhC---
Confidence            8888888764 56666667777 678888884 44555544443  67788888888877654    1244333332   


Q ss_pred             chhcccCCccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEe
Q 040113          698 MKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLN  777 (887)
Q Consensus       698 l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~  777 (887)
                                                                      ...|+.++|. +.++..-..+|.++++|+.++
T Consensus       299 ------------------------------------------------c~~L~~l~l~-~~i~~I~~~aF~~c~~L~~l~  329 (401)
T 4fdw_A          299 ------------------------------------------------CPKLARFEIP-ESIRILGQGLLGGNRKVTQLT  329 (401)
T ss_dssp             ------------------------------------------------CTTCCEECCC-TTCCEECTTTTTTCCSCCEEE
T ss_pred             ------------------------------------------------CccCCeEEeC-CceEEEhhhhhcCCCCccEEE
Confidence                                                            3456677777 446656677889999999999


Q ss_pred             CCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCC-CCCeeecccCccc
Q 040113          778 LDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELT-FLEFFNVSDNYLT  832 (887)
Q Consensus       778 Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~-~L~~L~ls~N~l~  832 (887)
                      |..| ++..-+.+|.++ +|+.+++++|.+....+..|.+++ .++.+.+..+.+.
T Consensus       330 lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          330 IPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             ECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             ECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            9655 776777889999 999999999998877777788774 6788888776544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.34  E-value=2.8e-11  Score=133.67  Aligned_cols=79  Identities=20%  Similarity=0.134  Sum_probs=45.5

Q ss_pred             cceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEcc
Q 040113          574 KLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQ  653 (887)
Q Consensus       574 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~  653 (887)
                      +|+.+.+.++ ++.+...+|.++.+|+.+++..+ ++.+...+|.+|++|+.+++..+ ++.+...+|.++++|+.+++.
T Consensus       298 ~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp  374 (394)
T 4fs7_A          298 SLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELP  374 (394)
T ss_dssp             TCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEE
T ss_pred             cccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEEC
Confidence            4555555433 33444455666666666666533 44455556666666666666555 555555566666666666665


Q ss_pred             CC
Q 040113          654 SN  655 (887)
Q Consensus       654 ~N  655 (887)
                      .+
T Consensus       375 ~~  376 (394)
T 4fs7_A          375 KR  376 (394)
T ss_dssp             GG
T ss_pred             CC
Confidence            44

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.33  E-value=5.3e-12  Score=121.22  Aligned_cols=105  Identities=22%  Similarity=0.242  Sum_probs=58.8

Q ss_pred             CCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113          550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG  629 (887)
Q Consensus       550 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  629 (887)
                      .+.+++++|.++ .+|..+.   .+|++|+|++|+|++..|..|..+++|++|++++|++++..+..|.++++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            456666666665 3454432   256666666666666555556666666666666666655555555555555555555


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCccc
Q 040113          630 DNQIRDIFPSWLGTLPNLTVLILQSNKFY  658 (887)
Q Consensus       630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~  658 (887)
                      +|++++..+..|..+++|++|+|++|++.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~  115 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD  115 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence            55555554444555555555444444443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.32  E-value=3.4e-12  Score=123.60  Aligned_cols=82  Identities=21%  Similarity=0.149  Sum_probs=35.9

Q ss_pred             CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccch--hhhCCCCCCEEE
Q 040113          231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPT--SIQNLVSLEELD  308 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~--~l~~l~~L~~L~  308 (887)
                      +|++|++++|.+++.  ..+..+++|++|++++|.+++..+..++.+++|++|++++|.+. .+|.  .+..+++|++|+
T Consensus        43 ~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~  119 (176)
T 1a9n_A           43 QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLC  119 (176)
T ss_dssp             CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEE
T ss_pred             CCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEE
Confidence            444444444444432  33444444444444444444322222344444444444444443 2232  344444444444


Q ss_pred             ccCCcCC
Q 040113          309 LSFNKLS  315 (887)
Q Consensus       309 L~~n~l~  315 (887)
                      +++|.+.
T Consensus       120 l~~N~i~  126 (176)
T 1a9n_A          120 ILRNPVT  126 (176)
T ss_dssp             CCSSGGG
T ss_pred             ecCCCCC
Confidence            4444444

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.31  E-value=3.7e-14  Score=140.43  Aligned_cols=135  Identities=24%  Similarity=0.266  Sum_probs=101.3

Q ss_pred             hhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCC
Q 040113          542 SWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCS  621 (887)
Q Consensus       542 ~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~  621 (887)
                      ..+..+++|++|++++|.+++ +| .+..++ +|++|++++|+++ .+|..+..+++|++|++++|++++. | .+..++
T Consensus        42 ~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~-~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~  115 (198)
T 1ds9_A           42 ATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIASL-S-GIEKLV  115 (198)
T ss_dssp             HHHHHTTTCSEEECSEEEESC-CC-CHHHHT-TCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCCH-H-HHHHHH
T ss_pred             HHHhcCCCCCEEECCCCCCcc-cc-ccccCC-CCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCcC-C-ccccCC
Confidence            378888888888888888876 56 777777 6888888888887 4566667778888888888888863 3 577788


Q ss_pred             CCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCC--------ccccCCCCCCEEEcCCCcCc
Q 040113          622 KLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREP--------RIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       622 ~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~--------~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      +|++|++++|++++..+ ..+..+++|++|++++|++.+..+..        .....+++|+.||  +|+++
T Consensus       116 ~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          116 NLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred             CCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence            88888888888887533 46778888888888888887765432        0124567777776  55554

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.29  E-value=1.2e-11  Score=119.19  Aligned_cols=104  Identities=19%  Similarity=0.211  Sum_probs=64.3

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      +.+++++|.++ .+|..+.   .+|++|++++|++++..|..|..+++|++|+|++|++++..+..|.++++|++|+|++
T Consensus        15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence            56777777774 5555443   2577777777777666666666666666666666666655555556666666666666


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCccc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFY  658 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~  658 (887)
                      |++++..+..|..+++|++|+|++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            6666555444555555555555555544

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.27  E-value=1.7e-10  Score=127.41  Aligned_cols=83  Identities=17%  Similarity=0.150  Sum_probs=39.1

Q ss_pred             cccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCC
Q 040113          592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS  671 (887)
Q Consensus       592 ~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~  671 (887)
                      .|..+.+|+.+.+..+ ++.+...+|.+|++|+.++|.++ ++.+...+|.++.+|+.+++..+ +..+....  +.+++
T Consensus       292 ~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~  366 (394)
T 4fs7_A          292 TFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANA--FQGCI  366 (394)
T ss_dssp             TTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTT--BTTCT
T ss_pred             cccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHH--hhCCC
Confidence            3445555555555433 33344445555555555555422 44444445555555555555444 33332222  24455


Q ss_pred             CCCEEEcC
Q 040113          672 KLRIIDLS  679 (887)
Q Consensus       672 ~L~~L~Ls  679 (887)
                      +|+.+++.
T Consensus       367 ~L~~i~lp  374 (394)
T 4fs7_A          367 NLKKVELP  374 (394)
T ss_dssp             TCCEEEEE
T ss_pred             CCCEEEEC
Confidence            55555554

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.15  E-value=5.2e-12  Score=137.42  Aligned_cols=86  Identities=28%  Similarity=0.355  Sum_probs=38.8

Q ss_pred             CCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc----cchh
Q 040113          230 SSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE----LPTS  297 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~  297 (887)
                      ++|++|++++|.++..    ++..+..+++|++|+|++|.+.+.    ++..+...++|++|+|++|.++..    ++..
T Consensus       155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~  234 (372)
T 3un9_A          155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA  234 (372)
T ss_dssp             CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred             CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence            4444444444444321    222234445555555555554321    233344444555555555555432    2223


Q ss_pred             hhCCCCCCEEEccCCcCC
Q 040113          298 IQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       298 l~~l~~L~~L~L~~n~l~  315 (887)
                      +...++|++|+|++|.++
T Consensus       235 L~~~~~L~~L~Ls~N~i~  252 (372)
T 3un9_A          235 AREHPSLELLHLYFNELS  252 (372)
T ss_dssp             HHHCSSCCEEECTTSSCC
T ss_pred             HHhCCCCCEEeccCCCCC
Confidence            334455555555555544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.11  E-value=1.1e-10  Score=126.76  Aligned_cols=86  Identities=20%  Similarity=0.208  Sum_probs=73.6

Q ss_pred             CceeEEEeec-CcCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeee
Q 040113          747 DILTSIILSS-NRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN  825 (887)
Q Consensus       747 ~~L~~L~Ls~-N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~  825 (887)
                      ..|+.|+|++ |.|++..|..|+++++|+.|+|++|+|++..|..|++|++|+.|||++|+|++..|..+..+. |++|+
T Consensus        31 ~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~-L~~l~  109 (347)
T 2ifg_A           31 ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELV  109 (347)
T ss_dssp             SCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSCC-CCEEE
T ss_pred             CCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcccCC-ceEEE
Confidence            4588999986 899888888888999999999999999988888889999999999999999877777777666 99999


Q ss_pred             cccCcccc
Q 040113          826 VSDNYLTG  833 (887)
Q Consensus       826 ls~N~l~g  833 (887)
                      +++|++..
T Consensus       110 l~~N~~~c  117 (347)
T 2ifg_A          110 LSGNPLHC  117 (347)
T ss_dssp             CCSSCCCC
T ss_pred             eeCCCccC
Confidence            99998875

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.09  E-value=8.9e-12  Score=135.61  Aligned_cols=111  Identities=26%  Similarity=0.254  Sum_probs=54.1

Q ss_pred             CCCCCEEEccCCCCCCCchhhhcC-----CCCCCEEEcccCCCCCcccccc-CCCCCCcEEeCcCCCCCCcchhhc----
Q 040113          205 LSNLETLDLGYVSIRSTIPHNLAN-----LSSLTFLSLHSCGLQGRIQSSL-GNLSKLLHLDLSLNELLGELPVSI----  274 (887)
Q Consensus       205 l~~L~~L~L~~n~~~~~~~~~l~~-----l~~L~~L~L~~n~l~~~~~~~l-~~l~~L~~L~Ls~n~l~~~~p~~l----  274 (887)
                      +++|++|++++|.++......+..     .++|++|+|++|.++......+ ..+++|++|+|++|.++......+    
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L  150 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL  150 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence            456777777777766543333322     2466666666666543322222 223455566666665543322222    


Q ss_pred             -cCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCC
Q 040113          275 -GNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       275 -~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                       ...++|++|+|++|.++..    ++..+..+++|++|+|++|.+.
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~  196 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLG  196 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCH
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCC
Confidence             2344555555555555421    2223344445555555555443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.03  E-value=6.8e-10  Score=120.34  Aligned_cols=104  Identities=15%  Similarity=0.114  Sum_probs=69.0

Q ss_pred             eEEcCCC-ccCCCCCCcccccCCcceEEecCC-CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC
Q 040113          552 ILVLSHN-NLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG  629 (887)
Q Consensus       552 ~L~Ls~n-~l~~~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~  629 (887)
                      .++.+++ .++ .+|. +..+. +|+.|+|++ |++++..+..|..+++|+.|+|++|+|++..|..|.++++|+.|+|+
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~-~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             EEEcCCCCCCC-ccCC-CCCCC-CeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            4566666 665 3565 66665 577777774 77776666667777777777777777777666667777777777777


Q ss_pred             CCcCCCCCCccccCCCCCCEEEccCCcccc
Q 040113          630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYG  659 (887)
Q Consensus       630 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  659 (887)
                      +|+|++..+..|..++ |+.|+|.+|++..
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c  117 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHC  117 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence            7777766555555554 6666666666553

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.02  E-value=5.2e-08  Score=107.33  Aligned_cols=133  Identities=12%  Similarity=0.099  Sum_probs=91.0

Q ss_pred             ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCC
Q 040113          541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC  620 (887)
Q Consensus       541 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  620 (887)
                      ..+|..+..|+.+.+.++... ....+|.++. +|+.+.+. +.++.+...+|.++.+|+.+++..+ ++.+...+|.+|
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~-~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C  333 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS-IGTGAFMNCP-ALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGC  333 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE-ECTTTTTTCT-TCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred             cceeeecccccEEecccccce-ecCccccccc-ccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCC
Confidence            356778888998888765432 4556677776 68888885 4566666778888999999998765 666667789999


Q ss_pred             CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcC
Q 040113          621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRF  683 (887)
Q Consensus       621 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l  683 (887)
                      ++|+.+.|..+ ++.+....|.++++|+.+++.++.....   .  +.....|+.+.+..+.+
T Consensus       334 ~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~~---~--~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          334 EQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQWN---A--ISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             TTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHHH---T--CBCCCCC----------
T ss_pred             CCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeehh---h--hhccCCCCEEEeCCCCE
Confidence            99999998654 7777677888999999999888764321   1  24456777777665543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=98.97  E-value=3.1e-08  Score=109.18  Aligned_cols=108  Identities=13%  Similarity=0.181  Sum_probs=65.3

Q ss_pred             hhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCC
Q 040113          543 WLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK  622 (887)
Q Consensus       543 ~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~  622 (887)
                      .|.++++|+.+.+.. .++.....+|.++. +|+.+++..+ ++.+...+|.++.+|+.+.+..+ ++.+...+|.+|++
T Consensus       283 aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~-~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~  358 (394)
T 4gt6_A          283 AFMNCPALQDIEFSS-RITELPESVFAGCI-SLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTA  358 (394)
T ss_dssp             TTTTCTTCCEEECCT-TCCEECTTTTTTCT-TCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTT
T ss_pred             ccccccccccccCCC-cccccCceeecCCC-CcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCC
Confidence            455666777777653 34434445666666 5777777653 55556677888888888888654 55566677888888


Q ss_pred             CcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcc
Q 040113          623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKF  657 (887)
Q Consensus       623 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  657 (887)
                      |+.+++.++....   ..+..+.+|+.+.+..+.+
T Consensus       359 L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          359 LNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            8888888775432   3566677788777766543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.72  E-value=1.1e-08  Score=110.06  Aligned_cols=85  Identities=15%  Similarity=0.261  Sum_probs=38.5

Q ss_pred             CCCCCEEEccCCcCCCCCCchhh-ccCCCCccEEEccCCCCCCc----cccccCCCCCccEEEccCCcCCccCCccccC-
Q 040113          301 LVSLEELDLSFNKLSGEFPWSIV-IGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPSSLRN-  374 (887)
Q Consensus       301 l~~L~~L~L~~n~l~~~~~~~~~-~~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~-  374 (887)
                      +++|++|++.+|.+.+..+.... ...+++|++|+|+.|.+.+.    ++..+..+++|+.|++++|.++......+.. 
T Consensus       251 ~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~a  330 (362)
T 2ra8_A          251 FPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKS  330 (362)
T ss_dssp             CTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHHH
T ss_pred             CCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHHH
Confidence            44555555555544422211100 11245566666655555442    2222234456666666666655432222221 


Q ss_pred             CCCCCEEEcCCCC
Q 040113          375 LTQLITLDLSQNS  387 (887)
Q Consensus       375 l~~L~~L~L~~n~  387 (887)
                      +  ...++++.++
T Consensus       331 l--g~~~~~~~~~  341 (362)
T 2ra8_A          331 L--PMKIDVSDSQ  341 (362)
T ss_dssp             C--CSEEECCSBC
T ss_pred             c--CCEEEecCCc
Confidence            1  3446666654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.66  E-value=2e-08  Score=108.08  Aligned_cols=58  Identities=24%  Similarity=0.260  Sum_probs=29.0

Q ss_pred             cCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhh--CCCCCCEEEcc
Q 040113          250 LGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQ--NLVSLEELDLS  310 (887)
Q Consensus       250 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~--~l~~L~~L~L~  310 (887)
                      +..+++|+.|++++|.-. .++. +. +++|++|++..+.+.......+.  .+++|++|+|+
T Consensus       168 l~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          168 LDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            344555555555554211 1222 22 55666666666665543333343  56666666664

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.60  E-value=3.1e-06  Score=92.53  Aligned_cols=108  Identities=14%  Similarity=0.189  Sum_probs=58.9

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL  623 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  623 (887)
                      +..+..|+.+.+..+ ++..-..++.++. +|+.+.+..+ +..+...+|.++.+|+.+.+.++.++.+...+|.+|.+|
T Consensus       236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~~-~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L  312 (379)
T 4h09_A          236 FYGMKALDEIAIPKN-VTSIGSFLLQNCT-ALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKL  312 (379)
T ss_dssp             TTTCSSCCEEEECTT-CCEECTTTTTTCT-TCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTC
T ss_pred             ccCCccceEEEcCCC-ccEeCccccceee-hhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCC
Confidence            334445555555443 2223333444444 4555555432 333444556666666666666666665556666666666


Q ss_pred             cEEeCCCCcCCCCCCccccCCCCCCEEEccCC
Q 040113          624 EFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN  655 (887)
Q Consensus       624 ~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N  655 (887)
                      +.+.|..+ ++.+...+|.++.+|+.+.+..+
T Consensus       313 ~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~  343 (379)
T 4h09_A          313 SSVTLPTA-LKTIQVYAFKNCKALSTISYPKS  343 (379)
T ss_dssp             CEEECCTT-CCEECTTTTTTCTTCCCCCCCTT
T ss_pred             CEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc
Confidence            66666543 55555556666666766666543

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.54  E-value=5.8e-06  Score=90.36  Aligned_cols=147  Identities=12%  Similarity=0.075  Sum_probs=113.9

Q ss_pred             ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCC
Q 040113          541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC  620 (887)
Q Consensus       541 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  620 (887)
                      ...+..+..|+.+.+..+ +......++..+. .|+.+.+..+ ++.+...+|.++.+|+.+.+..+ +......+|.+|
T Consensus       210 ~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~-~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c  285 (379)
T 4h09_A          210 AYGFSYGKNLKKITITSG-VTTLGDGAFYGMK-ALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGC  285 (379)
T ss_dssp             TTTTTTCSSCSEEECCTT-CCEECTTTTTTCS-SCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTC
T ss_pred             ecccccccccceeeeccc-eeEEccccccCCc-cceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccc
Confidence            345667888999888765 3434556677777 7999999776 66677788999999999999754 665667789999


Q ss_pred             CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccc
Q 040113          621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWN  696 (887)
Q Consensus       621 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~  696 (887)
                      ++|+.+.+.++.++.+....|.++.+|+.+.|..+ ++.+....  +.++++|+.+.+..+ ++ .|....|.+..
T Consensus       286 ~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~a--F~~C~~L~~i~ip~~-v~-~I~~~aF~~c~  356 (379)
T 4h09_A          286 SNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYA--FKNCKALSTISYPKS-IT-LIESGAFEGSS  356 (379)
T ss_dssp             TTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTT--TTTCTTCCCCCCCTT-CC-EECTTTTTTSS
T ss_pred             cccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHH--hhCCCCCCEEEECCc-cC-EEchhHhhCCC
Confidence            99999999999999888889999999999999765 55554343  478899999998765 43 56666676654

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.48  E-value=1.7e-09  Score=110.09  Aligned_cols=23  Identities=0%  Similarity=-0.259  Sum_probs=16.1

Q ss_pred             CCCccccceEecCCCCcEEEEEc
Q 040113           86 IDCCSWDGVECSENTGHVMKLDL  108 (887)
Q Consensus        86 ~~~c~w~gv~c~~~~~~v~~L~L  108 (887)
                      ..-|+|.|+.|+....+|..+..
T Consensus        75 ~~l~~~~g~i~~~~~~ki~~~v~   97 (267)
T 3rw6_A           75 SALKAVNYKILDRENRRISIIIN   97 (267)
T ss_dssp             HHHHHTTSSCBCTTSCBCCCEEE
T ss_pred             HHHHhcCcEEECCCCCEEEEEEe
Confidence            34589999999876556655544

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.39  E-value=2.7e-07  Score=89.37  Aligned_cols=114  Identities=16%  Similarity=0.213  Sum_probs=52.9

Q ss_pred             HhhcCCCCCEEEccCC-CCCCC----chhhhcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc--
Q 040113          201 LVEKLSNLETLDLGYV-SIRST----IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE--  269 (887)
Q Consensus       201 ~~~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~--  269 (887)
                      .+...++|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+...  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444555555555555 44332    223334445555555555555432    222333445555555555555432  


Q ss_pred             --chhhccCCCCCCEEEc--cCCCCCCc----cchhhhCCCCCCEEEccCCcC
Q 040113          270 --LPVSIGNLHSLKKLDL--SINNLSGE----LPTSIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       270 --~p~~l~~l~~L~~L~L--~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l  314 (887)
                        +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i  163 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  163 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence              2334444455555555  45555432    222333445555555555544

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.26  E-value=8.9e-07  Score=90.05  Aligned_cols=78  Identities=24%  Similarity=0.281  Sum_probs=44.1

Q ss_pred             CCceeEEEeecCcCCc--cChhhhhcccCCCEEeCCCCcccccCCccccCCC--CCCEEeCCCCcccccCCc-------c
Q 040113          746 PDILTSIILSSNRFDG--MIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLT--NLESLDLSNNNFLGQIPQ-------Q  814 (887)
Q Consensus       746 ~~~L~~L~Ls~N~l~~--~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~--~L~~L~Ls~N~l~~~~p~-------~  814 (887)
                      .+.|+.|+|++|+|++  .+|..++.+++|+.|+|++|++++.  ..+..+.  +|++|+|++|.+.+.+|.       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~i  246 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISAI  246 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHHH
Confidence            3456666666666665  3345555666666666666666653  2233333  666666666666655442       2


Q ss_pred             ccCCCCCCeee
Q 040113          815 LVELTFLEFFN  825 (887)
Q Consensus       815 l~~L~~L~~L~  825 (887)
                      +..+++|+.||
T Consensus       247 l~~~P~L~~LD  257 (267)
T 3rw6_A          247 RERFPKLLRLD  257 (267)
T ss_dssp             HHHCTTCCEES
T ss_pred             HHHCcccCeEC
Confidence            45555665554

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.24  E-value=5.4e-07  Score=87.27  Aligned_cols=93  Identities=19%  Similarity=0.168  Sum_probs=48.9

Q ss_pred             hhhhcCCCCCCEEEcccC-CCCCc----cccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc
Q 040113          223 PHNLANLSSLTFLSLHSC-GLQGR----IQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE  293 (887)
Q Consensus       223 ~~~l~~l~~L~~L~L~~n-~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~  293 (887)
                      ...+...+.|++|+|++| .+...    +...+...++|++|+|++|.+...    +...+...++|++|+|++|.+...
T Consensus        29 ~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~  108 (185)
T 1io0_A           29 KRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGS  108 (185)
T ss_dssp             HHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHH
T ss_pred             HHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHH
Confidence            344556667777777776 65532    233345556666666666666432    223334445566666666655532


Q ss_pred             ----cchhhhCCCCCCEEEc--cCCcCC
Q 040113          294 ----LPTSIQNLVSLEELDL--SFNKLS  315 (887)
Q Consensus       294 ----~~~~l~~l~~L~~L~L--~~n~l~  315 (887)
                          +...+...++|++|+|  ++|.+.
T Consensus       109 g~~~l~~~L~~n~~L~~L~L~~~~N~i~  136 (185)
T 1io0_A          109 GILALVEALQSNTSLIELRIDNQSQPLG  136 (185)
T ss_dssp             HHHHHHHGGGGCSSCCEEECCCCSSCCC
T ss_pred             HHHHHHHHHHhCCCceEEEecCCCCCCC
Confidence                2333444455555555  445443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.79  E-value=1.2e-05  Score=75.60  Aligned_cols=83  Identities=10%  Similarity=0.062  Sum_probs=38.4

Q ss_pred             CCCEEEcccCCCCCccccccCCCCCCcEEeCcCCC-CCCcchhhccCC----CCCCEEEccCCC-CCCccchhhhCCCCC
Q 040113          231 SLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE-LLGELPVSIGNL----HSLKKLDLSINN-LSGELPTSIQNLVSL  304 (887)
Q Consensus       231 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~-l~~~~p~~l~~l----~~L~~L~L~~n~-l~~~~~~~l~~l~~L  304 (887)
                      +|++|++++|.++..--..+.++++|++|+|++|. +++.--..++.+    ++|++|+|++|. ++...-..+..+++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555444333344455555555555553 333222233332    245555555543 443333344445555


Q ss_pred             CEEEccCCc
Q 040113          305 EELDLSFNK  313 (887)
Q Consensus       305 ~~L~L~~n~  313 (887)
                      ++|++++|.
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555543

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.65  E-value=2.6e-05  Score=73.32  Aligned_cols=59  Identities=14%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCC-CCCccchhhhCC----CCCCEEEccCC
Q 040113          254 SKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN-LSGELPTSIQNL----VSLEELDLSFN  312 (887)
Q Consensus       254 ~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~-l~~~~~~~l~~l----~~L~~L~L~~n  312 (887)
                      .+|++||++++.++..--..+.++++|++|+|++|. ++...-..++.+    ++|++|+|++|
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C  124 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISC  124 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESC
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCC
Confidence            346666666665554433444555555555555553 443333334432    24555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.17  E-value=0.00058  Score=65.38  Aligned_cols=111  Identities=17%  Similarity=0.192  Sum_probs=52.7

Q ss_pred             hhcCCCCCEEEccCC-CCCCC----chhhhcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc---
Q 040113          202 VEKLSNLETLDLGYV-SIRST----IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE---  269 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~---  269 (887)
                      +.+-+.|++|+|+++ .+...    +...+..-+.|++|+|++|.+.+.    +...+..-+.|++|+|++|.|...   
T Consensus        37 l~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~  116 (197)
T 1pgv_A           37 REDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLA  116 (197)
T ss_dssp             HTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHH
T ss_pred             HhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHH
Confidence            344455555555553 44321    233344445566666666655432    222333445566666666665432   


Q ss_pred             -chhhccCCCCCCEEEccCC---CCCC----ccchhhhCCCCCCEEEccCC
Q 040113          270 -LPVSIGNLHSLKKLDLSIN---NLSG----ELPTSIQNLVSLEELDLSFN  312 (887)
Q Consensus       270 -~p~~l~~l~~L~~L~L~~n---~l~~----~~~~~l~~l~~L~~L~L~~n  312 (887)
                       +.+.+..-+.|++|+|++|   .+..    .+.+.+..-+.|+.|+++.|
T Consensus       117 ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~  167 (197)
T 1pgv_A          117 RLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  167 (197)
T ss_dssp             HHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCC
Confidence             2233444455666666543   2221    12333444455555555544

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=96.68  E-value=0.0017  Score=62.21  Aligned_cols=23  Identities=17%  Similarity=0.288  Sum_probs=11.7

Q ss_pred             hHHHhhcCCCCCEEEccCCCCCC
Q 040113          198 FANLVEKLSNLETLDLGYVSIRS  220 (887)
Q Consensus       198 ~~~~~~~l~~L~~L~L~~n~~~~  220 (887)
                      +...+..-+.|++|+|++|.+..
T Consensus        90 lA~aL~~N~tL~~L~L~~N~Ig~  112 (197)
T 1pgv_A           90 LIELIETSPSLRVLNVESNFLTP  112 (197)
T ss_dssp             HHHHHHHCSSCCEEECCSSBCCH
T ss_pred             HHHHHhcCCccCeEecCCCcCCH
Confidence            34444455555555555555543

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.61  E-value=0.0031  Score=56.30  Aligned_cols=58  Identities=24%  Similarity=0.282  Sum_probs=41.8

Q ss_pred             eEEEeecCcCC-ccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccc
Q 040113          750 TSIILSSNRFD-GMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLG  809 (887)
Q Consensus       750 ~~L~Ls~N~l~-~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~  809 (887)
                      +.++.+++.++ ..+|..+.  .+|+.|+|++|+|+..-++.|..+++|+.|+|++|.+..
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~C   69 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRC   69 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBC
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeec
Confidence            36778888876 35564433  367888888888887667777788888888888887653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.27  E-value=0.0045  Score=55.27  Aligned_cols=55  Identities=18%  Similarity=0.277  Sum_probs=45.5

Q ss_pred             ceeeeecccc--ccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccc
Q 040113          730 SLKMNNKGQI--MTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ  784 (887)
Q Consensus       730 ~~~~~~~~~~--~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  784 (887)
                      .+.+...+..  ..+..++..++.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus        12 ~v~Cs~~~L~~~~vP~~lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTAFPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSCCCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCCCCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4555555555  555577889999999999999887888999999999999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	887
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-17
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	4e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-10
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	7e-09
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-18
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	7e-13
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-12
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-10
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	1e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.003
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-14
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	3e-13
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-12
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-11
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-10
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	1e-06
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-11
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-09
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	8e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	9e-05
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-04
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.001
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	0.003
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-08
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	5e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-07
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.001
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.003
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-07
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	6e-06
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	8e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	4e-07
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	2e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	3e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.004
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	4e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	9e-05
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	5e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.003
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	0.004
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	1e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	4e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.004
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	8e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.001
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.001

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 93.3 bits (230), Expect = 3e-21
 Identities = 81/325 (24%), Positives = 121/325 (37%), Gaps = 44/325 (13%)

Query: 37  LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCC--SWDGV 94
           LC+  +  ALLQ K+ L    T+                 +SW P     DCC  +W GV
Sbjct: 2   LCNPQDKQALLQIKKDLGNPTTL-----------------SSWLP---TTDCCNRTWLGV 41

Query: 95  ECSENTG--HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLS 152
            C  +T    V  LDLS   L       SSL  L +L +L +   +     IP  I  L+
Sbjct: 42  LCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLT 101

Query: 153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLD 212
           +L YL ++H++  G IP  + ++  LV+LD S N+  G      +    +  ++      
Sbjct: 102 QLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 213 LGYVSIRSTIPHNLANLSSLTFLSLH-----------------SCGLQGRIQSSLGNLSK 255
            G +         L    +++   L                  S  +     S L    K
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 256 LLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS 315
                      L      +G   +L  LDL  N + G LP  +  L  L  L++SFN L 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 316 GEFPWSIVIGNFTQLQSLDFTSNKF 340
           GE P     GN  +     + +NK 
Sbjct: 282 GEIPQ---GGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 82.1 bits (201), Expect = 2e-17
 Identities = 61/267 (22%), Positives = 84/267 (31%), Gaps = 10/267 (3%)

Query: 598 RLGMIDLSHNLFQGR--IPRSLINCSKLEFLDIGDN-QIRDIFPSWLGTLPNLTVLILQS 654
           R+  +DLS         IP SL N   L FL IG    +    P  +  L  L  L +  
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 655 NKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVIS 714
               G I +               +    T      S      +          + D   
Sbjct: 111 TNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYG 170

Query: 715 PKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQ 774
               L       +       N+          ++  + +  S        + +       
Sbjct: 171 SFSKL-------FTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNT 223

Query: 775 VLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGP 834
                  N        +G   NL  LDL NN   G +PQ L +L FL   NVS N L G 
Sbjct: 224 QKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE 283

Query: 835 IPQGRQFATFDNSSFESNSGLCGRPLS 861
           IPQG     FD S++ +N  LCG PL 
Sbjct: 284 IPQGGNLQRFDVSAYANNKCLCGSPLP 310

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.8 bits (143), Expect = 4e-10
 Identities = 49/269 (18%), Positives = 86/269 (31%), Gaps = 10/269 (3%)

Query: 325 GNFTQLQSLDFTSNKFSG--ELHASIGNLRSLEVLAIGRC-NFSGRIPSSLRNLTQLITL 381
               ++ +LD +         + +S+ NL  L  L IG   N  G IP ++  LTQL  L
Sbjct: 47  TQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYL 106

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIE 441
            ++  +  G +      +        S ++   +L   ++S       T  G R    I 
Sbjct: 107 YITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIP 166

Query: 442 FPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGG 501
                 +      L  S      ++   +         A       +   D  ++     
Sbjct: 167 -----DSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDK 221

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
               + L  +S                  + NN   G +P  L +L  L  L +S NNL 
Sbjct: 222 NTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281

Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIP 590
           G +P+  G+   +  +     N      P
Sbjct: 282 GEIPQ-GGNLQ-RFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 59.0 bits (141), Expect = 8e-10
 Identities = 43/272 (15%), Positives = 83/272 (30%), Gaps = 4/272 (1%)

Query: 361 RCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKV 420
              + G +  +     ++  LDLS  +      +   L +L  L  L +     +L+  +
Sbjct: 35  NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN-NLVGPI 93

Query: 421 TSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSA 480
                          +   +             L+ L  +             S  NL  
Sbjct: 94  PPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVG 153

Query: 481 LNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI 540
           +    N ++G                ++ +S N L G +P   +      V  +  + E 
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFT--SMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEG 211

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLG 600
            + +          +     S          S  L+ LDLR N  +GT+P    +   L 
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 601 MIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQ 632
            +++S N   G IP    N  + +     +N+
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNK 302

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 57.8 bits (138), Expect = 2e-09
 Identities = 22/62 (35%), Positives = 29/62 (46%), Gaps = 1/62 (1%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
            LDL  N + G LP  +  L  L  L++S NNL GE+P    NL   +    + NK    
Sbjct: 248 GLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306

Query: 318 FP 319
            P
Sbjct: 307 SP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 55.9 bits (133), Expect = 7e-09
 Identities = 63/281 (22%), Positives = 102/281 (36%), Gaps = 18/281 (6%)

Query: 248 SSLGNLSKLLHLDLSLNELLG--ELPVSIGNLHSLKKLDLSIN-NLSGELPTSIQNLVSL 304
            +     ++ +LDLS   L     +P S+ NL  L  L +    NL G +P +I  L  L
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQL 103

Query: 305 EELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364
             L ++             +     L +LDF+ N  SG L  SI +L +L  +       
Sbjct: 104 HYLYITHTN--VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRI 161

Query: 365 SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNT 424
           SG IP S  + ++L T      +    +                  S  +          
Sbjct: 162 SGAIPDSYGSFSKLFTSMTISRNR---LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 425 TSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484
           + +    + L   +L      +    +L  LDL +NRI+G +P  L     + L +LN+S
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLT--QLKFLHSLNVS 276

Query: 485 HNLLTGFDQQLVVLPGGKRF--LLTLDLSSNNLQGPLPVPP 523
            N L G       +P G           ++N      P+P 
Sbjct: 277 FNNLCG------EIPQGGNLQRFDVSAYANNKCLCGSPLPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 44.0 bits (102), Expect = 5e-05
 Identities = 21/66 (31%), Positives = 27/66 (40%), Gaps = 1/66 (1%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            NL  LDL    I  T+P  L  L  L  L++    L G I    GNL +      + N+
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANNK 302

Query: 266 LLGELP 271
            L   P
Sbjct: 303 CLCGSP 308

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 85.8 bits (211), Expect = 2e-18
 Identities = 72/404 (17%), Positives = 130/404 (32%), Gaps = 40/404 (9%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
            L++ +   L    +     VS  +L  +  L      +       ++ L +L +++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 312 NKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371
           N+L+   P    + N T+L  +   +N+ +     +     +   L   +      + + 
Sbjct: 76  NQLTDITP----LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTV 431
                         N  R  +  + +        + SL                +     
Sbjct: 132 -------------TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178

Query: 432 VGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF 491
               S N +   + L    +L  L  ++N+I    P  +      NL  L+L+ N L   
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESLIATNNQISDITPLGI----LTNLDELSLNGNQLKDI 234

Query: 492 DQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLE 551
                        L  LDL++N +    P+     +  L    + I  I         L 
Sbjct: 235 GT-----LASLTNLTDLDLANNQISNLAPLSGLTKLTELKLGANQISNISPL----AGLT 285

Query: 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQG 611
            L     N + L      S    L+ L L  NN     P      ++L  +  ++N    
Sbjct: 286 ALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD 343

Query: 612 RIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSN 655
               SL N + + +L  G NQI D+ P  L  L  +T L L   
Sbjct: 344 --VSSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 80.0 bits (196), Expect = 2e-16
 Identities = 74/393 (18%), Positives = 131/393 (33%), Gaps = 48/393 (12%)

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD--QQLVVLPGGKRFLLTLD 509
            M   L    +   +    LD     ++ L      +   D  + L         L  ++
Sbjct: 24  KMKTVLGKTNVTDTVSQTDLD----QVTTLQADRLGIKSIDGVEYL-------NNLTQIN 72

Query: 510 LSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSW----LCKLDSLEILVLSHNNLSGLLP 565
            S+N L    P+     +  ++ NN+ I +I            +L    ++  +    L 
Sbjct: 73  FSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 566 RCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSL-------- 617
                     +I D+ A +   ++           +  L++     R+  S         
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 618 -INCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRII 676
               + LE L   +NQI DI P  +    NL  L L  N+    +++       + L  +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQ----LKDIGTLASLTNLTDL 246

Query: 677 DLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNK 736
           DL+NN+ +   P          K+            ISP   L +             N+
Sbjct: 247 DLANNQISNLAP-----LSGLTKLTELKLGANQISNISPLAGLTALTNLEL-----NENQ 296

Query: 737 GQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTN 796
            + ++       LT + L  N    + P  +++L  LQ L   NN +     S L NLTN
Sbjct: 297 LEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 797 LESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           +  L   +N      P  L  LT +    ++D 
Sbjct: 353 INWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 70.4 bits (171), Expect = 3e-13
 Identities = 63/380 (16%), Positives = 118/380 (31%), Gaps = 40/380 (10%)

Query: 326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQ 385
              +           +  +  S  +L  +  L   R          +  L  L  ++ S 
Sbjct: 20  ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSN 75

Query: 386 NSYRGTMELDFL--LVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFP 443
           N       L  L  LV +            L+ LT +T  T             NL    
Sbjct: 76  NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135

Query: 444 NFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF--DQQLVVLPGG 501
               + + +  +   S     +  S+    +     A   +   L         + +   
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195

Query: 502 KRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLS 561
              L +L  ++N +    P+     ++ L  N + + +I + L  L +L  L L++N +S
Sbjct: 196 LTNLESLIATNNQISDITPLGILTNLDELSLNGNQLKDIGT-LASLTNLTDLDLANNQIS 254

Query: 562 GLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR--------------------LGM 601
            L P    S   KL+ L L AN      P   +                        L  
Sbjct: 255 NLAPL---SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTY 311

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           + L  N      P  + + +KL+ L   +N++ D   S L  L N+  L    N+   + 
Sbjct: 312 LTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLT 367

Query: 662 REPRIDCGFSKLRIIDLSNN 681
                    +++  + L++ 
Sbjct: 368 P----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 69.6 bits (169), Expect = 4e-13
 Identities = 56/215 (26%), Positives = 89/215 (41%), Gaps = 25/215 (11%)

Query: 124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDL 183
            KL +LE L    N        + +  L+ L  L+L+ +         +  L NL  LDL
Sbjct: 194 AKLTNLESLIATNNQISD---ITPLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDL 248

Query: 184 SLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ 243
           + N    L          +  L+ L  L LG   I +  P  LA L++LT L L+   L+
Sbjct: 249 ANNQISNLAP--------LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE 298

Query: 244 GRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVS 303
                S  NL  L +L L  N +    P  + +L  L++L  + N +S    +S+ NL +
Sbjct: 299 DISPIS--NLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTN 352

Query: 304 LEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSN 338
           +  L    N++S   P    + N T++  L     
Sbjct: 353 INWLSAGHNQISDLTP----LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.9 bits (167), Expect = 7e-13
 Identities = 77/393 (19%), Positives = 133/393 (33%), Gaps = 40/393 (10%)

Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
             L+      LG  ++  T+     +L  +T L     G++      +  L+ L  ++ S
Sbjct: 19  TALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFS 74

Query: 263 LNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSI 322
            N+L    P  + NL  L  + ++ N ++   P +    ++   L  +            
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLT 132

Query: 323 VIGNFT----QLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR----- 373
            +         +  +   S   S +  +    +  L+ LA         I S+       
Sbjct: 133 NLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV 192

Query: 374 --NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTV 431
              LT L +L  + N       L  L     NL+ LSL+ N L  +  + S T      +
Sbjct: 193 LAKLTNLESLIATNNQISDITPLGIL----TNLDELSLNGNQLKDIGTLASLTNLTDLDL 248

Query: 432 VGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGF 491
               + N I     L     L  L L +N+I    P   L   T      N   ++    
Sbjct: 249 ----ANNQISNLAPLSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPIS 304

Query: 492 DQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYL-VSNNSFIGEIPSWLCKLDSL 550
           + +          L  L L  NN+    PV     +  L  +NN       S L  L ++
Sbjct: 305 NLK---------NLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSD--VSSLANLTNI 353

Query: 551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRAN 583
             L   HN +S L P  L + + +++ L L   
Sbjct: 354 NWLSAGHNQISDLTP--LANLT-RITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 68.1 bits (165), Expect = 1e-12
 Identities = 80/396 (20%), Positives = 148/396 (37%), Gaps = 38/396 (9%)

Query: 98  ENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYL 157
                 MK  L  +    ++  + S   L  +  L       KS +    +  L+ L+ +
Sbjct: 19  TALAEKMKTVLGKT----NVTDTVSQTDLDQVTTLQADRLGIKSID---GVEYLNNLTQI 71

Query: 158 NLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVS 217
           N S++      P  +  L  LV + ++ N    +             L N +  D+  + 
Sbjct: 72  NFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 218 IRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVS---- 273
             + +     + ++++ +S  S     +  S    ++ L  L         ++  +    
Sbjct: 130 NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSD 189

Query: 274 ---IGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQL 330
              +  L +L+ L  + N +S   P  I    +L+EL L+ N+L         + + T L
Sbjct: 190 ISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKDIGT----LASLTNL 243

Query: 331 QSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRG 390
             LD  +N+ S    A +  L  L  L +G    S   P  L  LT L  L+L++N    
Sbjct: 244 TDLDLANNQISNL--APLSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLED 299

Query: 391 TMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQH 450
              +      LKNL  L+L  N +S ++ V+S T  Q+       + N +   + L N  
Sbjct: 300 ISPISN----LKNLTYLTLYFNNISDISPVSSLTKLQRLFF----ANNKVSDVSSLANLT 351

Query: 451 HLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHN 486
           ++  L    N+I    P   L      ++ L L+  
Sbjct: 352 NINWLSAGHNQISDLTPLANL----TRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 66.2 bits (160), Expect = 6e-12
 Identities = 72/372 (19%), Positives = 121/372 (32%), Gaps = 70/372 (18%)

Query: 90  SWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEII 149
           +        +   V  L          I S   +  L +L  +N + N        + + 
Sbjct: 33  NVTDTVSQTDLDQVTTLQADRL----GIKSIDGVEYLNNLTQINFSNNQLTD---ITPLK 85

Query: 150 NLSRLSYLNLSHSSFFGQIPSEILELV------------------------------NLV 179
           NL++L  + ++++      P   L  +                               + 
Sbjct: 86  NLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTIS 145

Query: 180 SLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSI-RSTIPHNLANLSSLTFLSLH 238
            +          +L   N    ++ L+NL TL+   +S  + +    LA L++L  L   
Sbjct: 146 DISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLIAT 205

Query: 239 SCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSI 298
           +  +       LG L+ L  L L+ N+L      ++ +L +L  LDL+ N +S   P  +
Sbjct: 206 NNQISDIT--PLGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--L 259

Query: 299 QNLVSLEELDLSFNKLSGEFP------------------WSIVIGNFTQLQSLDFTSNKF 340
             L  L EL L  N++S   P                      I N   L  L    N  
Sbjct: 260 SGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNI 319

Query: 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVS 400
           S      + +L  L+ L       S    SSL NLT +  L    N           L +
Sbjct: 320 SDIS--PVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHNQISDLTP----LAN 371

Query: 401 LKNLEVLSLSSN 412
           L  +  L L+  
Sbjct: 372 LTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 61.2 bits (147), Expect = 2e-10
 Identities = 69/421 (16%), Positives = 129/421 (30%), Gaps = 69/421 (16%)

Query: 150 NLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLE 209
            L+      L  ++    +     +L  + +L         ++         VE L+NL 
Sbjct: 20  ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDG--------VEYLNNLT 69

Query: 210 TLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGE 269
            ++     +    P  L NL+ L  +   +      I       +       +      +
Sbjct: 70  QINFSNNQLTDITP--LKNLTKLVDIL-MNNNQIADITPLANLTNLTGLTLFNNQITDID 126

Query: 270 LPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSG------------E 317
              ++ NL+ L+    +I+++S     +    +S          L+             +
Sbjct: 127 PLKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNK 186

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQ 377
                V+   T L+SL  T+N+ S      I    +L+ L++           +L +LT 
Sbjct: 187 VSDISVLAKLTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTN 242

Query: 378 LITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSC 437
           L  LDL+ N       L      L  L  L L +N +S ++ +   T           + 
Sbjct: 243 LTDLDLANNQISNLAPLS----GLTKLTELKLGANQISNISPLAGLTALTNLE----LNE 294

Query: 438 NLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVV 497
           N +E  + + N  +L  L L  N I    P   L      L  L  ++N ++        
Sbjct: 295 NQLEDISPISNLKNLTYLTLYFNNISDISPVSSL----TKLQRLFFANNKVSDVSS---- 346

Query: 498 LPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSH 557
                  +  L    N +    P                       L  L  +  L L+ 
Sbjct: 347 -LANLTNINWLSAGHNQISDLTP-----------------------LANLTRITQLGLND 382

Query: 558 N 558
            
Sbjct: 383 Q 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 1e-04
 Identities = 40/185 (21%), Positives = 67/185 (36%), Gaps = 27/185 (14%)

Query: 70  SGCRPKAASWKPEEGNIDCCSWDGVECSENTGHVMKLDLSNSCLYGSINSSS-------- 121
           S   P       +E +++      +    +  ++  LDL+N+ +      S         
Sbjct: 210 SDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLAPLSGLTKLTELK 269

Query: 122 -------SLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILE 174
                  ++  L  L  L     +    E  S I NL  L+YL L  ++     P  +  
Sbjct: 270 LGANQISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP--VSS 327

Query: 175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTF 234
           L  L  L  + N    +     + AN    L+N+  L  G+  I    P  LANL+ +T 
Sbjct: 328 LTKLQRLFFANNKVSDV----SSLAN----LTNINWLSAGHNQISDLTP--LANLTRITQ 377

Query: 235 LSLHS 239
           L L+ 
Sbjct: 378 LGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.4 bits (88), Expect = 0.003
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 6/77 (7%)

Query: 754 LSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQ 813
           L        +  S  +L  +  L  D   ++      +  L NL  ++ SNN      P 
Sbjct: 29  LGKTNVTDTV--SQTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQINFSNNQLTDITP- 83

Query: 814 QLVELTFLEFFNVSDNY 830
            L  LT L    +++N 
Sbjct: 84  -LKNLTKLVDILMNNNQ 99

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 75.8 bits (185), Expect = 2e-15
 Identities = 54/277 (19%), Positives = 96/277 (34%), Gaps = 15/277 (5%)

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHS 279
             +P +L        L L +  +         NL  L  L L  N++    P +   L  
Sbjct: 23  EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVK 80

Query: 280 LKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNK 339
           L++L LS N L  ELP  +   +  +EL +  N+++          N   +  L     K
Sbjct: 81  LERLYLSKNQLK-ELPEKMPKTL--QELRVHENEITKVRKSVFNGLNQMIVVELGTNPLK 137

Query: 340 FSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLV 399
            SG  + +   ++ L  + I   N +        +LT    L L  N             
Sbjct: 138 SSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSLT---ELHLDGNKITKVDAASL--K 192

Query: 400 SLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSS 459
            L NL  L   S          S   +     + L +  L++ P  L +  ++ ++ L +
Sbjct: 193 GLNNLAKLG-LSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHN 251

Query: 460 NRIHGKIPSWLLDPST----QNLSALNLSHNLLTGFD 492
           N I     +    P       + S ++L  N +  ++
Sbjct: 252 NNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 288

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 72.0 bits (175), Expect = 4e-14
 Identities = 49/280 (17%), Positives = 95/280 (33%), Gaps = 19/280 (6%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
            ++P ++      + L+L ++        +   L NL +L L  N    +          
Sbjct: 23  EKVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS------PGA 74

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
              L  LE L L    ++         L  L         ++  + + L N   ++ L  
Sbjct: 75  FAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGT 133

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321
           +  +  G    +   +  L  + ++  N++  +P  +    SL EL L  NK++     S
Sbjct: 134 NPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAAS 190

Query: 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
           +       L  L  + N  S   + S+ N   L  L +       ++P  L +   +  +
Sbjct: 191 LK--GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVV 247

Query: 382 DLSQNSYRGTMELDF----LLVSLKNLEVLSLSSNWLSLL 417
            L  N+       DF          +   +SL SN +   
Sbjct: 248 YLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYW 287

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 70.1 bits (170), Expect = 2e-13
 Identities = 62/321 (19%), Positives = 109/321 (33%), Gaps = 43/321 (13%)

Query: 167 QIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNL 226
           ++P ++    +   LDL  N    ++          + L NL TL L    I    P   
Sbjct: 24  KVPKDLPP--DTALLDLQNNKITEIK------DGDFKNLKNLHTLILINNKISKISPGAF 75

Query: 227 ANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLS 286
           A L  L  L L    L+   +     L +L   +  + ++   +  +  N   + +L  +
Sbjct: 76  APLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVF-NGLNQMIVVELGTN 134

Query: 287 INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHA 346
               SG    + Q +  L  + ++   ++     +I  G    L  L    NK +    A
Sbjct: 135 PLKSSGIENGAFQGMKKLSYIRIADTNIT-----TIPQGLPPSLTELHLDGNKITKVDAA 189

Query: 347 SIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEV 406
           S+  L +L  L +   + S     SL N   L  L L+ N               K ++V
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLA---DHKYIQV 246

Query: 407 LSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKI 466
           + L +N +S +                    N    P +   +     + L SN     +
Sbjct: 247 VYLHNNNISAIGS------------------NDFCPPGYNTKKASYSGVSLFSN----PV 284

Query: 467 PSWLLDPST----QNLSALNL 483
             W + PST       +A+ L
Sbjct: 285 QYWEIQPSTFRCVYVRAAVQL 305

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 69.3 bits (168), Expect = 3e-13
 Identities = 44/264 (16%), Positives = 81/264 (30%), Gaps = 18/264 (6%)

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
              +L L +N ++ +      +    L  L L  N      P  F    +L  + LS N 
Sbjct: 32  DTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
            +    +      +L   +   N+I  +  S    L  + V+ L +N       E     
Sbjct: 91  LKELPEKMPKTLQELRVHE---NEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQ 147

Query: 669 GFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYD 728
           G  KL  I +++   T        +       +    L   +        L         
Sbjct: 148 GMKKLSYIRIADTNIT-------TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 729 YSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQG--- 785
                +              L  + L++N+    +P  +A+ K +QV+ L NNN+     
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS 259

Query: 786 ---HIPSCLGNLTNLESLDLSNNN 806
                P       +   + L +N 
Sbjct: 260 NDFCPPGYNTKKASYSGVSLFSNP 283

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 66.6 bits (161), Expect = 2e-12
 Identities = 47/269 (17%), Positives = 90/269 (33%), Gaps = 13/269 (4%)

Query: 321 SIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT 380
            +          LD  +NK +        NL++L  L +     S   P +   L +L  
Sbjct: 24  KVPKDLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 83

Query: 381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440
           L LS+N  +   E     +    +    ++    S+   +      +  T     S    
Sbjct: 84  LYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI-- 141

Query: 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPG 500
                 +    L  + ++   I   IP  L      +L+ L+L  N +T  D   +    
Sbjct: 142 -ENGAFQGMKKLSYIRIADTNIT-TIPQGLP----PSLTELHLDGNKITKVDAASLK--- 192

Query: 501 GKRFLLTLDLSSNNLQGPLP--VPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHN 558
           G   L  L LS N++       +  +  +  L  NN+ + ++P  L     ++++ L +N
Sbjct: 193 GLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNN 252

Query: 559 NLSGLLPRCLGSFSDKLSILDLRANNFFG 587
           N+S +                    + F 
Sbjct: 253 NISAIGSNDFCPPGYNTKKASYSGVSLFS 281

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 65.1 bits (157), Expect = 7e-12
 Identities = 43/257 (16%), Positives = 81/257 (31%), Gaps = 13/257 (5%)

Query: 443 PNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGK 502
               KN  +L  L L +N+I    P          L  L LS N L    +++      +
Sbjct: 48  DGDFKNLKNLHTLILINNKISKISPGAF--APLVKLERLYLSKNQLKELPEKMPK-TLQE 104

Query: 503 RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG 562
             +   +++         +     V    +     G        +  L  + ++  N++ 
Sbjct: 105 LRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT 164

Query: 563 LLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSK 622
           +           L+ L L  N        +    + L  + LS N        SL N   
Sbjct: 165 IPQ----GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPH 220

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE----PRIDCGFSKLRIIDL 678
           L  L + +N++    P  L     + V+ L +N    I       P  +   +    + L
Sbjct: 221 LRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSL 279

Query: 679 SNNRFT-GKLPSKSFLC 694
            +N     ++   +F C
Sbjct: 280 FSNPVQYWEIQPSTFRC 296

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 63.1 bits (152), Expect = 4e-11
 Identities = 46/237 (19%), Positives = 84/237 (35%), Gaps = 11/237 (4%)

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
               ++DL +N           N   L  L + +N+I  I P     L  L  L L  N+
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 657 FYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPK 716
              +  +          + + +  N  T  +    F   N M +V           I   
Sbjct: 91  LKELPEKMPKTL-----QELRVHENEITK-VRKSVFNGLNQMIVVELGTNPLKSSGIENG 144

Query: 717 EWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVL 776
            +    +++     +   N   I     +P  LT + L  N+   +   S+  L  L  L
Sbjct: 145 AFQGMKKLSYIR--IADTNITTI--PQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKL 200

Query: 777 NLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTG 833
            L  N++       L N  +L  L L+NN  L ++P  L +  +++   + +N ++ 
Sbjct: 201 GLSFNSISAVDNGSLANTPHLRELHLNNNK-LVKVPGGLADHKYIQVVYLHNNNISA 256

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 60.8 bits (146), Expect = 2e-10
 Identities = 49/231 (21%), Positives = 78/231 (33%), Gaps = 10/231 (4%)

Query: 623 LEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNR 682
              LD+ +N+I +I       L NL  LIL +NK   I   P       KL  + LS N+
Sbjct: 33  TALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS--PGAFAPLVKLERLYLSKNQ 90

Query: 683 FTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTY 742
               LP K       +++      K  + V +    ++  E+ T          G     
Sbjct: 91  LKE-LPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 149

Query: 743 DKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDL 802
            K    L+ I ++      +          L  L+LD N +     + L  L NL  L L
Sbjct: 150 KK----LSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGL 202

Query: 803 SNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNS 853
           S N+        L     L   ++++N L                   +N+
Sbjct: 203 SFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNN 253

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 22/117 (18%), Positives = 32/117 (27%)

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
           +P     + L +N+   +      NLK L  L L NN +    P     L  LE L LS 
Sbjct: 29  LPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 88

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLS 861
           N       +    L  L         +   +  G                      +
Sbjct: 89  NQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGA 145

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (150), Expect = 4e-11
 Identities = 51/305 (16%), Positives = 84/305 (27%), Gaps = 36/305 (11%)

Query: 506 LTLDLSSNNLQG-PLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
           +T       LQ  P+ +P +    +L   N       +      +L IL L  N L+ + 
Sbjct: 14  VTTSCPQQGLQAVPVGIPAASQRIFL-HGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
                  +    +            P TF    RL  + L     Q   P      + L+
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQ 132

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
           +L + DN ++ +       L NLT L L  N+   +        G   L  + L  NR  
Sbjct: 133 YLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER--AFRGLHSLDRLLLHQNRVA 190

Query: 685 GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDK 744
              P         M                              Y    N          
Sbjct: 191 HVHPHAFRDLGRLM----------------------------TLYLFANNLSALPTEALA 222

Query: 745 VPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSN 804
               L  + L+ N +      +      LQ     ++ +   +P     L   +   L+ 
Sbjct: 223 PLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQ---RLAGRDLKRLAA 278

Query: 805 NNFLG 809
           N+  G
Sbjct: 279 NDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.4 bits (134), Expect = 4e-09
 Identities = 44/252 (17%), Positives = 82/252 (32%), Gaps = 11/252 (4%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
           ++ L  + +      ++S     +L  L L  N     +  +              ++  
Sbjct: 36  RIFLHGNRISHVP--AASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQL 93

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
               P+    L  L +L L       L                L+ L L   ++++    
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA------ALQYLYLQDNALQALPDD 147

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
              +L +LT L LH   +    + +   L  L  L L  N +    P +  +L  L  L 
Sbjct: 148 TFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLY 207

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
           L  NNLS     ++  L +L+ L L+ N    +         +  LQ    +S++    L
Sbjct: 208 LFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR---ARPLWAWLQKFRGSSSEVPCSL 264

Query: 345 HASIGNLRSLEV 356
              +       +
Sbjct: 265 PQRLAGRDLKRL 276

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 47/268 (17%), Positives = 85/268 (31%), Gaps = 10/268 (3%)

Query: 321 SIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLIT 380
           ++ +G     Q +    N+ S    AS    R+L +L +     +    ++   L  L  
Sbjct: 25  AVPVGIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQ 84

Query: 381 LDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLI 440
           LDLS N+   +++       L  L  L L    L  L        +    +    +    
Sbjct: 85  LDLSDNAQLRSVD-PATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 441 EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPG 500
              +  ++  +L  L L  NRI              +L  L L  N +           G
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAF--RGLHSLDRLLLHQNRVAHVHPHAFRDLG 201

Query: 501 GKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLDSLEILVLSHNN 559
               L     + + L      P        +++N ++ +     L     L+    S + 
Sbjct: 202 RLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSE 259

Query: 560 LSGLLPRCLGSFSDKLSILDLRANNFFG 587
           +   LP+ L        +  L AN+  G
Sbjct: 260 VPCSLPQRLAG----RDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (120), Expect = 2e-07
 Identities = 42/315 (13%), Positives = 85/315 (26%), Gaps = 60/315 (19%)

Query: 539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESR 598
            +P  +    + + + L  N +S +      +  +   +                     
Sbjct: 25  AVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 599 LGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFY 658
             +    +   +   P +     +L  L +    ++++ P     L  L  L LQ N   
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ 142

Query: 659 GIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEW 718
            +            L  + L  NR +           +                      
Sbjct: 143 ALP--DDTFRDLGNLTHLFLHGNRISSVPERAFRGLHS---------------------- 178

Query: 719 LLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNL 778
                                         L  ++L  NR   + P +  +L  L  L L
Sbjct: 179 ------------------------------LDRLLLHQNRVAHVHPHAFRDLGRLMTLYL 208

Query: 779 DNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIP-- 836
             NNL       L  L  L+ L L++N ++     + +   +L+ F  S + +   +P  
Sbjct: 209 FANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLPQR 267

Query: 837 -QGRQFATFDNSSFE 850
             GR       +  +
Sbjct: 268 LAGRDLKRLAANDLQ 282

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.2 bits (139), Expect = 8e-10
 Identities = 37/208 (17%), Positives = 63/208 (30%), Gaps = 15/208 (7%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           ++         +P  L        L + +N +     + L     LT L L   +     
Sbjct: 15  VNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT--- 68

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
            + ++D     L  +DLS+N+          L    +  V+ + L  L          L 
Sbjct: 69  -KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL------GALR 121

Query: 722 DEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSS-NRFDGMIPTSIANLKGLQVLNLDN 780
                 +  LK N    +      P      +  + N    +    +  L+ L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 781 NNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           N+L   IP        L    L  N +L
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 2e-07
 Identities = 37/211 (17%), Positives = 65/211 (30%), Gaps = 13/211 (6%)

Query: 619 NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDL 678
             +    ++     +  + P  L    + T+L L  N  Y           +++L  ++L
Sbjct: 8   KVASHLEVNCDKRNLTAL-PPDLP--KDTTILHLSENLLYTFS--LATLMPYTRLTQLNL 62

Query: 679 SNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQ 738
                T        L  +    V  +       + S      +    T            
Sbjct: 63  DRAELT-------KLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115

Query: 739 IMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLE 798
            +   +    L  + L  N    + P  +     L+ L+L NNNL       L  L NL+
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175

Query: 799 SLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
           +L L  N+    IP+       L F  +  N
Sbjct: 176 TLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 34/211 (16%), Positives = 64/211 (30%), Gaps = 11/211 (5%)

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
           V K+++   ++    ++ + +P +L      T L L    L     ++L   ++L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWS 321
                       +    +L  L     + +      +          L  +         
Sbjct: 63  D-----RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 322 IVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITL 381
             +    +LQ L    N+        +     LE L++   N +      L  L  L TL
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 382 DLSQNSYRGTMELDFLLVSLKNLEVLSLSSN 412
            L +NS      +         L    L  N
Sbjct: 178 LLQENSL---YTIPKGFFGSHLLPFAFLHGN 205

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 9e-05
 Identities = 38/190 (20%), Positives = 54/190 (28%), Gaps = 51/190 (26%)

Query: 539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN-------------- 584
            +P  L K     IL LS N L       L  ++ +L+ L+L                  
Sbjct: 24  ALPPDLPK--DTTILHLSENLLYTFSLATLMPYT-RLTQLNLDRAELTKLQVDGTLPVLG 80

Query: 585 -------------------------------FFGTIPNTFMKESRLGMIDLSHNLFQGRI 613
                                                        L  + L  N  +   
Sbjct: 81  TLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140

Query: 614 PRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL 673
           P  L    KLE L + +N + ++    L  L NL  L+LQ N  Y I   P+   G   L
Sbjct: 141 PGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI---PKGFFGSHLL 197

Query: 674 RIIDLSNNRF 683
               L  N +
Sbjct: 198 PFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.8 bits (99), Expect = 1e-04
 Identities = 28/189 (14%), Positives = 55/189 (29%), Gaps = 20/189 (10%)

Query: 142 SEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL 201
           + +P ++      + L+LS +  +    + ++    L  L+L   +             L
Sbjct: 23  TALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLD-RAELTKLQVDGTLPVL 79

Query: 202 VEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDL 261
                +   L    +  ++     + ++S     SL    L+G  +     L       L
Sbjct: 80  GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL 139

Query: 262 ----------------SLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLE 305
                           + N L       +  L +L  L L  N+L   +P        L 
Sbjct: 140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLP 198

Query: 306 ELDLSFNKL 314
              L  N  
Sbjct: 199 FAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 6e-04
 Identities = 40/198 (20%), Positives = 69/198 (34%), Gaps = 6/198 (3%)

Query: 206 SNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNE 265
            +   L L    + +     L   + LT L+L    L             +L      + 
Sbjct: 31  KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD---GTLPVLGTLDLSHN 87

Query: 266 LLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG 325
            L  LP+    L +L  LD+S N L+     +++ L  L+EL L  N+L    P  +   
Sbjct: 88  QLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPT 147

Query: 326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQ 385
              +  SL    N  +      +  L +L+ L +   +    IP        L    L  
Sbjct: 148 PKLEKLSLAN--NNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHG 204

Query: 386 NSYRGTMELDFLLVSLKN 403
           N +    E+ +    L++
Sbjct: 205 NPWLCNCEILYFRRWLQD 222

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 14/65 (21%), Positives = 22/65 (33%), Gaps = 3/65 (4%)

Query: 766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825
            ++ +     +N D  NL   +P  L    +   L LS N         L+  T L   N
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 826 VSDNY 830
           +    
Sbjct: 62  LDRAE 66

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.7 bits (91), Expect = 0.001
 Identities = 35/215 (16%), Positives = 64/215 (29%), Gaps = 11/215 (5%)

Query: 249 SLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD 308
            +  ++  L ++     L   LP  +        L LS N L      ++     L +L+
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 309 LSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRI 368
           L            + +     +      S+     L      L +L VL +     +   
Sbjct: 62  LD-----RAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLP 116

Query: 369 PSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQK 428
             +LR L +L  L L  N  +                 L+ ++N   L   + +   +  
Sbjct: 117 LGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA-NNNLTELPAGLLNGLEN-- 173

Query: 429 FTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIH 463
              + L+  +L   P      H L    L  N   
Sbjct: 174 LDTLLLQENSLYTIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.003
 Identities = 32/212 (15%), Positives = 55/212 (25%), Gaps = 28/212 (13%)

Query: 324 IGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDL 383
           +        ++      +  L   +   +   +L +          ++L   T+L  L+L
Sbjct: 6   VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNL 62

Query: 384 SQNSYRGTMELDFL-------------------LVSLKNLEVLSLSSNWLSLLTKVTSNT 424
            +           L                     +L  L VL +S N L+ L       
Sbjct: 63  DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122

Query: 425 TSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLS 484
             +   +    +      P  L     L  L L++N +       L      NL  L L 
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE--NLDTLLLQ 180

Query: 485 HNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQ 516
            N L    +           L    L  N   
Sbjct: 181 ENSLYTIPKGFFGSH----LLPFAFLHGNPWL 208

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.8 bits (125), Expect = 6e-08
 Identities = 39/251 (15%), Positives = 80/251 (31%), Gaps = 8/251 (3%)

Query: 553 LVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGR 612
           L L+  NL   +   L   S  +        +F            R+  +DLS+++ +  
Sbjct: 5   LDLTGKNLHPDVTGRL--LSQGVIAFRC-PRSFMDQPLAEHFSPFRVQHMDLSNSVIEVS 61

Query: 613 IPRSLI-NCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFS 671
               ++  CSKL+ L +   ++ D   + L    NL  L L     +       +    S
Sbjct: 62  TLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS 121

Query: 672 KLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDV---ISPKEWLLSDEVATYD 728
           +L  ++LS      +   +  +   +  I   +   Y +++              +   D
Sbjct: 122 RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLD 181

Query: 729 YSLKMNNKGQIMTYDKVPDILTSIILSS-NRFDGMIPTSIANLKGLQVLNLDNNNLQGHI 787
            S  +  K          + L  + LS            +  +  L+ L +      G +
Sbjct: 182 LSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTL 241

Query: 788 PSCLGNLTNLE 798
                 L +L+
Sbjct: 242 QLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 16/107 (14%), Positives = 40/107 (37%), Gaps = 3/107 (2%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
            LDL+   L  ++   + +   +       + +   L         ++ +DLS + +   
Sbjct: 4   TLDLTGKNLHPDVTGRLLS-QGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEVS 61

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNF 364
               I +   ++LQ+L     + S  +  ++    +L  L +  C+ 
Sbjct: 62  TLHGI-LSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSG 107

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 1e-06
 Identities = 49/270 (18%), Positives = 106/270 (39%), Gaps = 13/270 (4%)

Query: 102 HVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSH 161
            V+      S +   +    S F++ H+   +L+ +  + S +   +   S+L  L+L  
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHM---DLSNSVIEVSTLHGILSQCSKLQNLSLEG 80

Query: 162 SSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANL--VEKLSNLETLDLGYVSIR 219
                 I + + +  NLV L+LS  SG+     +   ++   +++L+     D     ++
Sbjct: 81  LRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQ 140

Query: 220 STIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELL-GELPVSIGNLH 278
             + H    ++ L          +  + + +     L+HLDLS + +L  +       L+
Sbjct: 141 VAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLN 200

Query: 279 SLKKLDLS-INNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTS 337
            L+ L LS   ++  E    +  + +L+ L +      G             L  L    
Sbjct: 201 YLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLK-----EALPHLQINC 255

Query: 338 NKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
           + F+     +IGN ++ E+  I +C  + +
Sbjct: 256 SHFTTIARPTIGNKKNQEIWGI-KCRLTLQ 284

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (110), Expect = 5e-06
 Identities = 20/103 (19%), Positives = 43/103 (41%), Gaps = 5/103 (4%)

Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
           + LDL+  NL    P     L+S   +     +   + P +    +  ++Q +D +++  
Sbjct: 3   QTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVI 58

Query: 341 SGE-LHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLD 382
               LH  +     L+ L++     S  I ++L   + L+ L+
Sbjct: 59  EVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLN 101

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 7e-04
 Identities = 53/327 (16%), Positives = 97/327 (29%), Gaps = 60/327 (18%)

Query: 105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSF 164
            LDL+   L+  +       +L+    +          +  +E  +  R+ +++LS+S  
Sbjct: 4   TLDLTGKNLHPDV-----TGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVI 58

Query: 165 FGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH 224
                  IL                              + S L+ L L  + +   I +
Sbjct: 59  EVSTLHGIL-----------------------------SQCSKLQNLSLEGLRLSDPIVN 89

Query: 225 NLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD 284
            LA  S+L  L+L  C             S     +L+L+         +    +     
Sbjct: 90  TLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSET 149

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
           ++  NLSG                     L      ++V      +      S     + 
Sbjct: 150 ITQLNLSG-----------------YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDC 192

Query: 345 HASIGNLRSLEVLAIGRCNF-SGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKN 403
                 L  L+ L++ RC          L  +  L TL +      GT++L  L  +L +
Sbjct: 193 FQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL--LKEALPH 250

Query: 404 LEVLSLSSNWLSLLTKVTSNTTSQKFT 430
           L++        S  T +   T   K  
Sbjct: 251 LQINC------SHFTTIARPTIGNKKN 271

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 51.8 bits (122), Expect = 2e-07
 Identities = 44/321 (13%), Positives = 92/321 (28%), Gaps = 26/321 (8%)

Query: 524 SRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF---SDKLSILDL 580
            +++            + + L + DS++ +VLS N +     R L         L I + 
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 581 RANNFFGTIPNTFMKESRLGMIDLS-HNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPS 639
                             L    L    L   R+  +    +  E L    ++   +   
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 640 WLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMK 699
           +L           +  +    +   +       LR I    NR       +    + + +
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 700 IVNTSDLKYLQDVISPKEWLLS---------DEVATYDYSLKMNNKGQIMTYDKVPDILT 750
           +++T  +          E LL            +   D +        +    K    L 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 751 SIILSSNRFDGMIPTSIAN------LKGLQVLNLDNNNLQGHIPSCL-----GNLTNLES 799
            + L+          ++ +        GLQ L L  N ++      L       + +L  
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF 306

Query: 800 LDLSNNNF--LGQIPQQLVEL 818
           L+L+ N F     +  ++ E+
Sbjct: 307 LELNGNRFSEEDDVVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 43.3 bits (100), Expect = 8e-05
 Identities = 45/317 (14%), Positives = 85/317 (26%), Gaps = 16/317 (5%)

Query: 279 SLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQS 332
           S++   L ++ ++ E    +   +    S++E+ LS N +  E    +   I +   L+ 
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 333 LDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTM 392
            +F S+ F+G +   I     L + A+ +C     +  S           L     + T 
Sbjct: 64  AEF-SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTP 122

Query: 393 ELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHL 452
                L +                   V     +       +   N +E  +  +     
Sbjct: 123 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 182

Query: 453 MLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSS 512
               L       +            L  L     L     Q       G        L+ 
Sbjct: 183 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA-----LAI 237

Query: 513 NNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSG----LLPRCL 568
                P           L +  +          +   L+ L L +N +       L   +
Sbjct: 238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 297

Query: 569 GSFSDKLSILDLRANNF 585
                 L  L+L  N F
Sbjct: 298 DEKMPDLLFLELNGNRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 42.2 bits (97), Expect = 2e-04
 Identities = 36/303 (11%), Positives = 78/303 (25%), Gaps = 24/303 (7%)

Query: 368 IPSSLRNLTQLITLDLSQN--SYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTT 425
           + + L     +  + LS N         L   + S K+LE+   S  +   +        
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 426 SQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
                 +    C  +       N       +   + +    P   L      L     + 
Sbjct: 83  RLLLQAL--LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAK 140

Query: 486 NLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLC 545
                 +  +         L ++    N L+       ++T       ++          
Sbjct: 141 IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRP 200

Query: 546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS 605
           +     +L          +     +            +     +         L  + L+
Sbjct: 201 EGIEHLLLEGLAYCQELKVLDLQDNTFT---------HLGSSALAIALKSWPNLRELGLN 251

Query: 606 HNLFQGRIPRSLINC------SKLEFLDIGDNQIRDIFPSWLGT-----LPNLTVLILQS 654
             L   R   ++++         L+ L +  N+I       L T     +P+L  L L  
Sbjct: 252 DCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNG 311

Query: 655 NKF 657
           N+F
Sbjct: 312 NRF 314

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 0.001
 Identities = 56/327 (17%), Positives = 90/327 (27%), Gaps = 33/327 (10%)

Query: 254 SKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDL 309
            K L LD    E    +   +    S+K++ LS N +  E    L  +I +   LE  + 
Sbjct: 7   GKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 310 SFN---KLSGEFPW-----SIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR 361
           S     ++  E P         +    +L ++  + N F       + +  S        
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHL 126

Query: 362 CNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVT 421
              +  +             +L+ N           ++  +N         W        
Sbjct: 127 YLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHR 186

Query: 422 SNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD--PSTQNLS 479
              T +                  L     L +LDL  N       S L     S  NL 
Sbjct: 187 LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLR 246

Query: 480 ALNLSHNLLTGFDQQLVVLPGGK---RFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSF 536
            L L+  LL+      VV    K     L TL L  N +                  ++ 
Sbjct: 247 ELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI----------------ELDAV 290

Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSGL 563
                    K+  L  L L+ N  S  
Sbjct: 291 RTLKTVIDEKMPDLLFLELNGNRFSEE 317

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.3 bits (87), Expect = 0.003
 Identities = 11/90 (12%), Positives = 29/90 (32%), Gaps = 5/90 (5%)

Query: 771 KGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNF----LGQIPQQLVELTFLEFFNV 826
           K L++  +   + +  + + L    +++ + LS N         + + +     LE    
Sbjct: 8   KSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEF 66

Query: 827 SDNYLTGPIPQGRQFATFDNSSFESNSGLC 856
           SD +      +  +       +      L 
Sbjct: 67  SDIFTGRVKDEIPEALRLLLQALLKCPKLH 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.5 bits (121), Expect = 3e-07
 Identities = 16/93 (17%), Positives = 35/93 (37%), Gaps = 8/93 (8%)

Query: 256 LLHLDLSLNELLGE-LPVSIGNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLS 310
           +  LD+   EL        +  L   + + L    L+      + ++++   +L EL+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 311 FNKLSGEFPWSIVIG---NFTQLQSLDFTSNKF 340
            N+L       ++ G      ++Q L   +   
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.1 bits (120), Expect = 3e-07
 Identities = 15/75 (20%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 749 LTSIILSSNRF-DGMIPTSIANLKGLQVLNLDNNNLQG----HIPSCLGNLTNLESLDLS 803
           + S+ +      D      +  L+  QV+ LD+  L       I S L     L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 804 NNNFLGQIPQQLVEL 818
           +N         +++ 
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 2e-06
 Identities = 20/84 (23%), Positives = 31/84 (36%), Gaps = 7/84 (8%)

Query: 276 NLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG---NFT 328
               L+ L L+  ++S      L  ++    SL ELDLS N L       +V        
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 329 QLQSLDFTSNKFSGELHASIGNLR 352
            L+ L      +S E+   +  L 
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 3e-06
 Identities = 62/436 (14%), Positives = 113/436 (25%), Gaps = 35/436 (8%)

Query: 436 SCNLI---EFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLD--PSTQNLSALNLSHNLLTG 490
            C  +    +   L       ++ L    +       +         L+ LNL  N L  
Sbjct: 10  QCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD 69

Query: 491 FDQQLV--VLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLD 548
                V   L      +  L L +  L G      S T+  L +                
Sbjct: 70  VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGL 129

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            L +     +    L    L   S   +  +  A+          +  S   + +    +
Sbjct: 130 QL-LCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRV 188

Query: 609 FQGRIPRSLINCSKLEFLDIGDN----QIRDIFPSWLGTLPNLTVLILQSNKFYGIIREP 664
               +  S      L+    G      +      +   +L  L +   +          P
Sbjct: 189 LCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCP 248

Query: 665 RIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEV 724
            +    S+LR + +     T K          A + +    L   +        L    +
Sbjct: 249 GLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLL 308

Query: 725 ATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKG------------ 772
                   +  K    T        + +  +    +  I  +     G            
Sbjct: 309 EPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPG 368

Query: 773 --LQVLNLDNNNLQG----HIPSCLGNLTNLESLDLSNNNFLGQIPQQLVE-----LTFL 821
             L+VL L + ++       + + L    +L  LDLSNN        QLVE        L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428

Query: 822 EFFNVSDNYLTGPIPQ 837
           E   + D Y +  +  
Sbjct: 429 EQLVLYDIYWSEEMED 444

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.3 bits (110), Expect = 6e-06
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 9/79 (11%)

Query: 749 LTSIILSSNRFDGM----IPTSIANLKGLQVLNLDNNNLQGHIPSCLG-----NLTNLES 799
           L  + L+           +  ++     L+ L+L NN L       L          LE 
Sbjct: 371 LRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 430

Query: 800 LDLSNNNFLGQIPQQLVEL 818
           L L +  +  ++  +L  L
Sbjct: 431 LVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.1 bits (107), Expect = 1e-05
 Identities = 21/92 (22%), Positives = 35/92 (38%), Gaps = 8/92 (8%)

Query: 330 LQSLDFTSNKFSGE-LHASIGNLRSLEVLAIGRCNFSGR----IPSSLRNLTQLITLDLS 384
           +QSLD    + S       +  L+  +V+ +  C  +      I S+LR    L  L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 385 QN--SYRGTMEL-DFLLVSLKNLEVLSLSSNW 413
            N     G   +   L      ++ LSL +  
Sbjct: 64  SNELGDVGVHCVLQGLQTPSCKIQKLSLQNCC 95

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 18/91 (19%), Positives = 30/91 (32%), Gaps = 5/91 (5%)

Query: 207 NLETLDLGYVSIRST-IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDL 261
           ++++LD+    +        L  L     + L  CGL       I S+L     L  L+L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 262 SLNELLGELPVSIGNLHSLKKLDLSINNLSG 292
             NEL       +          +   +L  
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.7 bits (106), Expect = 2e-05
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 9/91 (9%)

Query: 238 HSCGLQGRIQSSLGNLSKLLHLDLSLNEL----LGELPVSIGNLHSLKKLDLSINNLSGE 293
              G++   Q      S L  L L+  ++       L  ++   HSL++LDLS N L   
Sbjct: 353 EDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 412

Query: 294 LPTSI-----QNLVSLEELDLSFNKLSGEFP 319
               +     Q    LE+L L     S E  
Sbjct: 413 GILQLVESVRQPGCLLEQLVLYDIYWSEEME 443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 26/91 (28%), Gaps = 3/91 (3%)

Query: 279 SLKKLDLSINNLSGE-LPTSIQNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDF 335
            ++ LD+    LS       +  L   + + L    L+      I   +     L  L+ 
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 336 TSNKFSGELHASIGNLRSLEVLAIGRCNFSG 366
            SN+        +          I + +   
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.0 bits (99), Expect = 1e-04
 Identities = 21/92 (22%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 219 RSTIPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGELPVSI 274
           R          S L  L L  C +       + ++L     L  LDLS N L     + +
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 275 G-----NLHSLKKLDLSINNLSGELPTSIQNL 301
                     L++L L     S E+   +Q L
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 3e-04
 Identities = 19/90 (21%), Positives = 31/90 (34%), Gaps = 13/90 (14%)

Query: 574 KLSILDLRANNF----FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI-----NCSKLE 624
            L +L L   +       ++  T +    L  +DLS+N         L+         LE
Sbjct: 370 VLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLE 429

Query: 625 FLDIGDNQIRDIFPSWLGTL----PNLTVL 650
            L + D    +     L  L    P+L V+
Sbjct: 430 QLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 4e-04
 Identities = 21/135 (15%), Positives = 39/135 (28%), Gaps = 23/135 (17%)

Query: 477 NLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSF 536
           ++ +L++    L+  D +   L    +    + L    L                   + 
Sbjct: 3   DIQSLDIQCEELS--DARWAELLPLLQQCQVVRLDDCGL-----------------TEAR 43

Query: 537 IGEIPSWLCKLDSLEILVLSHNNLSG----LLPRCLGSFSDKLSILDLRANNFFGTIPNT 592
             +I S L    +L  L L  N L       + + L + S K+  L L+     G     
Sbjct: 44  CKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 103

Query: 593 FMKESRLGMIDLSHN 607
                R        +
Sbjct: 104 LSSTLRTLPTLQELH 118

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 8e-04
 Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 7/86 (8%)

Query: 299 QNLVSLEELDLSFNKLSGEFPWSI--VIGNFTQLQSLDFTSNKFSGELHASIG-----NL 351
           Q    L  L L+   +S     S+   +     L+ LD ++N         +        
Sbjct: 366 QPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPG 425

Query: 352 RSLEVLAIGRCNFSGRIPSSLRNLTQ 377
             LE L +    +S  +   L+ L +
Sbjct: 426 CLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.2 bits (89), Expect = 0.002
 Identities = 18/103 (17%), Positives = 27/103 (26%), Gaps = 11/103 (10%)

Query: 317 EFPWSIVIGNFTQLQSLDFTSNKFSGE----LHASIGNLRSLEVLAIGRCNFSGRIPSSL 372
                 +    + L+ L       S      L A++    SL  L +            L
Sbjct: 358 RELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQL 417

Query: 373 -----RNLTQLITLDLSQN--SYRGTMELDFLLVSLKNLEVLS 408
                +    L  L L     S      L  L     +L V+S
Sbjct: 418 VESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVIS 460

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 50.6 bits (119), Expect = 4e-07
 Identities = 50/325 (15%), Positives = 98/325 (30%), Gaps = 15/325 (4%)

Query: 505 LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLL 564
              L+L++  L     +PP         N+  + E+P     L SL +   +   LS L 
Sbjct: 40  AHELELNNLGLSSLPELPPHLESLVASCNS--LTELPELPQSLKSLLVDNNNLKALSDLP 97

Query: 565 PRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLE 624
           P           +  L        +    +  + L  +       +     +       E
Sbjct: 98  PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157

Query: 625 FLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT 684
             ++          + L  LP+L + +        I+ E         L  I   NN   
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217

Query: 685 GKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLKMNNK----GQIM 740
                   L    ++    +DL  L   ++  +   +      +    +        +I 
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277

Query: 741 TYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESL 800
           +   +P  L  + +S+N+    +P     L   + L    N+L   +P    NL   + L
Sbjct: 278 SLCDLPPSLEELNVSNNKLIE-LPALPPRL---ERLIASFNHLA-EVPELPQNL---KQL 329

Query: 801 DLSNNNFLGQIPQQLVELTFLEFFN 825
            +  N  L + P     +  L   +
Sbjct: 330 HVEYNP-LREFPDIPESVEDLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 47.9 bits (112), Expect = 3e-06
 Identities = 55/304 (18%), Positives = 93/304 (30%), Gaps = 14/304 (4%)

Query: 533 NNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRA-NNFFGTIPN 591
           NN  +  +P        LE LV S N+L+ L        S  +   +L+A ++    +  
Sbjct: 46  NNLGLSSLPELPP---HLESLVASCNSLTELPELPQSLKSLLVDNNNLKALSDLPPLLEY 102

Query: 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLI 651
             +  ++L  +    N    +I     N  K         +      + L  LP L  L 
Sbjct: 103 LGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLP 162

Query: 652 LQSNKFYGIIREPRIDCGFSKLRIIDLSNNR--FTGKLPSKSFLCWNAMKIVNTSDLKYL 709
             +  +       ++      L  I   NN      +L +  FL            L  L
Sbjct: 163 FLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDL 222

Query: 710 QDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIAN 769
              +       +      +    +               L   +   N     I +    
Sbjct: 223 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDL 282

Query: 770 LKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN 829
              L+ LN+ NN L   +P+       LE L  S N+ L ++P+    L  L   +V  N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALPP---RLERLIASFNH-LAEVPELPQNLKQL---HVEYN 334

Query: 830 YLTG 833
            L  
Sbjct: 335 PLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 6e-05
 Identities = 23/80 (28%), Positives = 38/80 (47%), Gaps = 8/80 (10%)

Query: 237 LHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPT 296
            +       I+S       L  L++S N+L+ ELP        L++L  S N+L+ E+P 
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPE 321

Query: 297 SIQNLVSLEELDLSFNKLSG 316
             QN   L++L + +N L  
Sbjct: 322 LPQN---LKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 43.7 bits (101), Expect = 8e-05
 Identities = 26/99 (26%), Positives = 36/99 (36%), Gaps = 11/99 (11%)

Query: 258 HLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGE 317
                LN    E+        SL++L++S N L  ELP        LE L  SFN L+ E
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-E 318

Query: 318 FPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEV 356
            P          L+ L    N    E      ++  L +
Sbjct: 319 VPELP-----QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 42.1 bits (97), Expect = 2e-04
 Identities = 47/317 (14%), Positives = 85/317 (26%), Gaps = 23/317 (7%)

Query: 376 TQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLR 435
            Q   L+L+         L  L     +LE L  S N L+ L ++  +  S       L+
Sbjct: 38  RQAHELELNNLG------LSSLPELPPHLESLVASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 436 SCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQL 495
           + + +          +  L  L   +    +    +D ++                    
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 496 VVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVL 555
           +      + L  L     +      +P        +   + I E    L  L  L  +  
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 556 SHNNLSGLLPRCLG-------SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            +N L  L                        ++  F     N F   S L       N 
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDC 668
               I         LE L++ +N++ ++        P L  LI   N    +   P    
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIASFNHLAEVPELP---- 323

Query: 669 GFSKLRIIDLSNNRFTG 685
               L+ + +  N    
Sbjct: 324 --QNLKQLHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 3e-04
 Identities = 20/80 (25%), Positives = 34/80 (42%), Gaps = 10/80 (12%)

Query: 224 HNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL 283
                  SL  L++ +  L   + +    L +L     S N L  E+P    NL   K+L
Sbjct: 278 SLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHL-AEVPELPQNL---KQL 329

Query: 284 DLSINNLSG--ELPTSIQNL 301
            +  N L    ++P S+++L
Sbjct: 330 HVEYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 40.2 bits (92), Expect = 8e-04
 Identities = 25/94 (26%), Positives = 38/94 (40%), Gaps = 11/94 (11%)

Query: 285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGEL 344
             +N  S E+ +      SLEEL++S NKL  E P         +L+ L  + N  + E+
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP-----ALPPRLERLIASFNHLA-EV 319

Query: 345 HASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQL 378
                NL+ L V      N     P    ++  L
Sbjct: 320 PELPQNLKQLHV----EYNPLREFPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 0.002
 Identities = 52/333 (15%), Positives = 94/333 (28%), Gaps = 19/333 (5%)

Query: 254 SKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNK 313
            +   L+L+   L   LP    +L   + L  S N+L+ ELP   Q+L SL   + +   
Sbjct: 38  RQAHELELNNLGL-SSLPELPPHL---ESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92

Query: 314 LSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLR 373
           LS   P    +G               S      + N    ++  +          ++  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 374 NLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVG 433
                +       +          L  L       ++ N +        N          
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 434 LRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQ 493
                 +          ++    L+      +  ++L            L  NL      
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 494 QLVVLPGGKRF--LLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLE 551
              +         L  L++S+N L     +PP         N+  + E+P       +L+
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLIELPALPPRLERLIASFNH--LAEVPEL---PQNLK 327

Query: 552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANN 584
            L + +N L    P    S        DLR N+
Sbjct: 328 QLHVEYNPLRE-FPDIPESVE------DLRMNS 353

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.003
 Identities = 53/328 (16%), Positives = 95/328 (28%), Gaps = 19/328 (5%)

Query: 230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINN 289
                L L++ GL   +     +L     L  S N L  ELP    +L SL   + ++  
Sbjct: 38  RQAHELELNNLGLS-SLPELPPHLE---SLVASCNSL-TELPELPQSLKSLLVDNNNLKA 92

Query: 290 LSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIG 349
           LS   P      VS  +L+      +  F   I + N +  +  D   +        +  
Sbjct: 93  LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152

Query: 350 NLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMELDF-----LLVSLKNL 404
                               S  +     ++L+          EL        L ++   
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212

Query: 405 EVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHG 464
             L  +   L    +  +   +    +  L         +         L          
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272

Query: 465 KIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPS 524
                 L     +L  LN+S+N       +L+ LP     L  L  S N+L     +P +
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNN-------KLIELPALPPRLERLIASFNHLAEVPELPQN 325

Query: 525 RTVNYLVSNNSFIGEIPSWLCKLDSLEI 552
               ++  N   + E P     ++ L +
Sbjct: 326 LKQLHVEYNP--LREFPDIPESVEDLRM 351

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (113), Expect = 1e-06
 Identities = 25/215 (11%), Positives = 53/215 (24%), Gaps = 4/215 (1%)

Query: 613 IPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSK 672
           IP  L        L     ++R I         +L  + +  N    +I           
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKL 80

Query: 673 LRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLSDEVATYDYSLK 732
             I     N       +                   ++ +    +     +V        
Sbjct: 81  HEIRIEKANNLLY--INPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNI 138

Query: 733 MNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLG 792
             +  +  ++  +      + L+ N    +   +    +  ++   DNNNL+        
Sbjct: 139 NIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFH 198

Query: 793 NLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVS 827
             +    LD+S           L  L  L   +  
Sbjct: 199 GASGPVILDISRTRIHSLPSYGLENLKKLRARSTY 233

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.0 bits (112), Expect = 2e-06
 Identities = 19/212 (8%), Positives = 52/212 (24%), Gaps = 2/212 (0%)

Query: 597 SRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
                +       +     +      LE ++I  N + ++  + + +       I     
Sbjct: 29  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 88

Query: 657 FYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPK 716
              +   P        L+ + +SN                 + +    ++       +  
Sbjct: 89  NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSF 148

Query: 717 EWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVL 776
                   +   +  K   +           +    +  +N  + +         G  +L
Sbjct: 149 VG--LSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVIL 206

Query: 777 NLDNNNLQGHIPSCLGNLTNLESLDLSNNNFL 808
           ++    +       L NL  L +    N   L
Sbjct: 207 DISRTRIHSLPSYGLENLKKLRARSTYNLKKL 238

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 6e-05
 Identities = 29/228 (12%), Positives = 57/228 (25%), Gaps = 3/228 (1%)

Query: 430 TVVGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLT 489
            V   +   + E P+ L    + + L     ++                  ++ +  L  
Sbjct: 11  RVFLCQESKVTEIPSDLPR--NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEV 68

Query: 490 GFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIP-SWLCKLD 548
                   LP      +    +   +              L+SN           +  L 
Sbjct: 69  IEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQ 128

Query: 549 SLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNL 608
            + + +  + N+  +        S +  IL L  N         F       +    +N 
Sbjct: 129 KVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNN 188

Query: 609 FQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNK 656
            +          S    LDI   +I  +    L  L  L      + K
Sbjct: 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 47.3 bits (111), Expect = 3e-06
 Identities = 35/227 (15%), Positives = 62/227 (27%), Gaps = 24/227 (10%)

Query: 602 IDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGII 661
           I    +     + ++  +   +  L      +  I    +  L NL  L L+ N+     
Sbjct: 24  IAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQIT--- 76

Query: 662 REPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQDVISPKEWLLS 721
               +        +    N        +                       +S  + L  
Sbjct: 77  DLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVL-- 134

Query: 722 DEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNN 781
                        +  QI     +  +     LS         T +ANL  L  L  D+N
Sbjct: 135 -----------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDN 183

Query: 782 NLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD 828
            +    P  L +L NL  + L NN      P  L   + L    +++
Sbjct: 184 KISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.4 bits (93), Expect = 5e-04
 Identities = 42/220 (19%), Positives = 75/220 (34%), Gaps = 22/220 (10%)

Query: 203 EKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLS 262
             L+N   +  G  ++  T+    A+L  +T LS    G+       +  L+ L+ L+L 
Sbjct: 16  PALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT--IEGVQYLNNLIGLELK 71

Query: 263 LNEL--------LGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314
            N++        L ++     + + LK +       S +        ++        + L
Sbjct: 72  DNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL 131

Query: 315 SGEFPWSIVIGNFTQLQSLDFTSNKFSGELHAS----IGNLRSLEVLAIGRCNFSGRIPS 370
              +     I N + L  L        G    S    + NL  L  L       S   P 
Sbjct: 132 QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP- 190

Query: 371 SLRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLS 410
            L +L  LI + L  N       L     +  NL +++L+
Sbjct: 191 -LASLPNLIEVHLKNNQISDVSPLA----NTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 36/234 (15%), Positives = 76/234 (32%), Gaps = 24/234 (10%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
            L+  + +    + +     V+  +L  +  L      ++      +Q L +L  L+L  
Sbjct: 17  ALANAIKIAAGKSNVTD--TVTQADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 312 NKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS 371
           N+++   P   +        S +   N  +     SI  L             +G     
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNL- 131

Query: 372 LRNLTQLITLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTV 431
            + L   +    + +   G   L +L +    +  L+  +N   L T    +        
Sbjct: 132 -QVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD-------- 182

Query: 432 VGLRSCNLIEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSH 485
                 N I   + L +  +L+ + L +N+I    P         NL  + L++
Sbjct: 183 ------NKISDISPLASLPNLIEVHLKNNQISDVSPLANT----SNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.002
 Identities = 48/231 (20%), Positives = 82/231 (35%), Gaps = 27/231 (11%)

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD--QQLVVLPGGKRFLLTLD 509
            + +    + +   +    LD     ++ L+     +T  +  Q L         L+ L+
Sbjct: 21  AIKIAAGKSNVTDTVTQADLD----GITTLSAFGTGVTTIEGVQYL-------NNLIGLE 69

Query: 510 LSSNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLG 569
           L  N +        + T    +  +    +  S +  L S++ L L+   ++ + P    
Sbjct: 70  LKDNQITDL-APLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 570 SFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG 629
           S    L             I N         +  LS    Q      L N SKL  L   
Sbjct: 129 SNLQVL-------YLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD 181

Query: 630 DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSN 680
           DN+I DI P  L +LPNL  + L++N+   +          S L I+ L+N
Sbjct: 182 DNKISDISP--LASLPNLIEVHLKNNQISDVS----PLANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 34/216 (15%), Positives = 68/216 (31%), Gaps = 19/216 (8%)

Query: 103 VMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHS 162
            +K+    S    ++  + +   L  +  L+       + E    +  L+ L  L L  +
Sbjct: 21  AIKIAAGKS----NVTDTVTQADLDGITTLSAFGTGVTTIE---GVQYLNNLIGLELKDN 73

Query: 163 SFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRST- 221
                 P + L  +  + L  +            +   L    + +  +           
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 222 -------IPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSI 274
                  I +            L     Q    + L NLSKL  L    N++    P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 275 GNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLS 310
            +L +L ++ L  N +S   P  + N  +L  + L+
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.0 bits (98), Expect = 4e-05
 Identities = 24/124 (19%), Positives = 50/124 (40%), Gaps = 10/124 (8%)

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN 591
           ++      +   L +L  +  L LSHN L         + +    +  L+A++      +
Sbjct: 6   AHKDL--TVLCHLEQLLLVTHLDLSHNRLRA----LPPALAALRCLEVLQASDNALENVD 59

Query: 592 TFMKESRLGMIDLSHN-LFQGRIPRSLINCSKLEFLDIGDNQI---RDIFPSWLGTLPNL 647
                 RL  + L +N L Q    + L++C +L  L++  N +     I       LP++
Sbjct: 60  GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSV 119

Query: 648 TVLI 651
           + ++
Sbjct: 120 SSIL 123

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 40.9 bits (95), Expect = 9e-05
 Identities = 25/128 (19%), Positives = 48/128 (37%), Gaps = 7/128 (5%)

Query: 281 KKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKF 340
           + L L+  +L+      ++ L+ +  LDLS N+L    P    +     L+ L  + N  
Sbjct: 1   RVLHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRALPPA---LAALRCLEVLQASDNAL 55

Query: 341 SGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTMEL-DFLLV 399
              +       R  E+L              L +  +L+ L+L  NS      + + L  
Sbjct: 56  E-NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAE 114

Query: 400 SLKNLEVL 407
            L ++  +
Sbjct: 115 MLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.5 bits (89), Expect = 5e-04
 Identities = 31/133 (23%), Positives = 48/133 (36%), Gaps = 22/133 (16%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
             L  L  + HLDLS N L    P ++  L  L+ L  S N    E    + NL  L+EL
Sbjct: 14  CHLEQLLLVTHLDLSHNRLRALPP-ALAALRCLEVLQASDNA--LENVDGVANLPRLQEL 70

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGR 367
            L  N+L         + +  +L  L+   N    E                       R
Sbjct: 71  LLCNNRLQQ-SAAIQPLVSCPRLVLLNLQGNSLCQE------------------EGIQER 111

Query: 368 IPSSLRNLTQLIT 380
           +   L +++ ++T
Sbjct: 112 LAEMLPSVSSILT 124

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.6 bits (84), Expect = 0.003
 Identities = 23/105 (21%), Positives = 40/105 (38%), Gaps = 5/105 (4%)

Query: 481 LNLSHNLLTGFDQQLVVLPGGKRFLLTLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI 540
           L+L+H  LT               +  LDLS N L+   P   +     ++  +    E 
Sbjct: 3   LHLAHKDLTVLCHL-----EQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF 585
              +  L  L+ L+L +N L             +L +L+L+ N+ 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 102

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 36.2 bits (83), Expect = 0.004
 Identities = 23/113 (20%), Positives = 34/113 (30%), Gaps = 8/113 (7%)

Query: 380 TLDLSQNSYRGTMELDFLLVSLKNLEVLSLSSNWLSLLTKVTSNTTSQKFTVVGLRSCNL 439
            L L+         L+     L  +  L LS N L  L    +     +       +   
Sbjct: 2   VLHLAHKDLTVLCHLE----QLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALEN 57

Query: 440 IEFPNFLKNQHHLMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFD 492
           ++          L  L L +NR+        L  S   L  LNL  N L   +
Sbjct: 58  VDGVAN---LPRLQELLLCNNRLQQSAAIQPLV-SCPRLVLLNLQGNSLCQEE 106

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 1e-04
 Identities = 37/198 (18%), Positives = 66/198 (33%), Gaps = 48/198 (24%)

Query: 252 NLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSF 311
             ++ +  +L    +     V+   L+S+ ++  + +++       IQ L ++ +L L+ 
Sbjct: 22  AFAETIKDNLKKKSVTD--AVTQNELNSIDQIIANNSDIKS--VQGIQYLPNVTKLFLNG 77

Query: 312 NKLSGEFPWS--------------------------------------IVIGNFTQLQSL 333
           NKL+   P +                                       + G     Q  
Sbjct: 78  NKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLE 137

Query: 334 DFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSYRGTME 393
                         +  L  L+ L++     S  +P  L  LT+L  L LS+N       
Sbjct: 138 SLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA 195

Query: 394 LDFLLVSLKNLEVLSLSS 411
           L      LKNL+VL L S
Sbjct: 196 LA----GLKNLDVLELFS 209

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.004
 Identities = 34/203 (16%), Positives = 67/203 (33%), Gaps = 19/203 (9%)

Query: 452 LMLLDLSSNRIHGKIPSWLLDPSTQNLSALNLSHNLLTGFDQQLVVLPGGKRFLLTLDLS 511
            +  +L    +   +    L+    ++  +  +++ +    Q +  LP     +  L L+
Sbjct: 26  TIKDNLKKKSVTDAVTQNELN----SIDQIIANNSDIKSV-QGIQYLPN----VTKLFLN 76

Query: 512 SNNLQGPLPVPPSRTVNYLVSNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSF 571
            N L         + +  L +      +           ++  L   +L       +   
Sbjct: 77  GNKLTDI------KPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGL 130

Query: 572 SDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDN 631
                +  L   N   T      + ++L  + L  N     +P  L   +KL+ L +  N
Sbjct: 131 VHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKN 188

Query: 632 QIRDIFPSWLGTLPNLTVLILQS 654
            I D+    L  L NL VL L S
Sbjct: 189 HISDL--RALAGLKNLDVLELFS 209

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.5 bits (91), Expect = 4e-04
 Identities = 15/90 (16%), Positives = 29/90 (32%), Gaps = 3/90 (3%)

Query: 766 SIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFN 825
              N    + L+L    +   I +    L   +++D S+N            L  L+   
Sbjct: 13  QYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKLDGFP--LLRRLKTLL 69

Query: 826 VSDNYLTGPIPQGRQFATFDNSSFESNSGL 855
           V++N +        Q          +N+ L
Sbjct: 70  VNNNRICRIGEGLDQALPDLTELILTNNSL 99

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 0.002
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 7/95 (7%)

Query: 604 LSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIRE 663
           L+  L +        N  +   LD+   +I  I  +   TL     +    N+   +   
Sbjct: 3   LTAELIEQAA--QYTNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKLDGF 59

Query: 664 PRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAM 698
           P       +L+ + ++NNR             +  
Sbjct: 60  P----LLRRLKTLLVNNNRICRIGEGLDQALPDLT 90

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (84), Expect = 0.004
 Identities = 20/140 (14%), Positives = 39/140 (27%), Gaps = 5/140 (3%)

Query: 248 SSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEEL 307
           +   N  +   LDL   + +  +      L     +D S N +          L  L+ L
Sbjct: 12  AQYTNAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRK--LDGFPLLRRLKTL 68

Query: 308 DLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGR--CNFS 365
            ++ N++                  L   S    G+L           +  +     N  
Sbjct: 69  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 128

Query: 366 GRIPSSLRNLTQLITLDLSQ 385
                 +  + Q+  LD  +
Sbjct: 129 HYRLYVIYKVPQVRVLDFQK 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 8e-04
 Identities = 19/117 (16%), Positives = 34/117 (29%), Gaps = 2/117 (1%)

Query: 746 PDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPS-CLGNLTNLESLDLSN 804
           P   + +  + +         +   + L  L ++N     H+    L  L  L +L +  
Sbjct: 7   PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65

Query: 805 NNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLS 861
           +      P        L   N+S N L     +  Q  +        N   C   L 
Sbjct: 66  SGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALR 122

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (88), Expect = 0.001
 Identities = 19/127 (14%), Positives = 41/127 (32%), Gaps = 1/127 (0%)

Query: 532 SNNSFIGEIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPN 591
           + +  + +    L   ++L  L + +      L         +L  L +  +      P+
Sbjct: 16  TRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74

Query: 592 TFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIRDIFPSWLGTLPNLTVLI 651
            F    RL  ++LS N  +    +++   S  E +  G+         WL       +  
Sbjct: 75  AFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGG 134

Query: 652 LQSNKFY 658
           +   K  
Sbjct: 135 VPEQKLQ 141

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 0.001
 Identities = 25/135 (18%), Positives = 46/135 (34%), Gaps = 12/135 (8%)

Query: 255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKL 314
               LDL       +L       +    L+   ++++  L    +N+  L  L+LS N+L
Sbjct: 23  SQQALDLKGLRSDPDL----VAQNIDVVLNRR-SSMAATLRIIEENIPELLSLNLSNNRL 77

Query: 315 SGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS--- 371
                 S ++     L+ L+ + N+   E          LE L +   + S         
Sbjct: 78  YRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTY 137

Query: 372 ----LRNLTQLITLD 382
                    +L+ LD
Sbjct: 138 ISAIRERFPKLLRLD 152

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	887
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.94
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.88
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.82
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.75
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.73
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.73
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.72
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.71
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.62
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.61
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.6
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.54
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.5
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.43
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.36
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.28
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.1
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.03
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.1
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.95
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.69
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.44
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.04
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	96.69

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=1.5e-38  Score=339.78  Aligned_cols=295  Identities=32%  Similarity=0.505  Sum_probs=189.8

Q ss_pred             CCCHHHHHHHHHhhhcCCCCCCcccccccCCCCCCCCCCCCCCCCCCCCCCCcc--ccceEecCC--CCcEEEEEcCCCc
Q 040113           37 LCHDDECSALLQFKESLIINDTIEESYHYYPWSSGCRPKAASWKPEEGNIDCCS--WDGVECSEN--TGHVMKLDLSNSC  112 (887)
Q Consensus        37 ~~~~~~~~~ll~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~c~--w~gv~c~~~--~~~v~~L~L~~~~  112 (887)
                      .|.++||+||++||+++.++.                 .+++|..   +.|||.  |.||+|+..  .+||++|+|+++.
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~-----------------~l~sW~~---~~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~   61 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPT-----------------TLSSWLP---TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLN   61 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCG-----------------GGTTCCT---TSCTTTTCSTTEEECCSSSCCCEEEEEEECCC
T ss_pred             CCCHHHHHHHHHHHHHCCCCC-----------------cCCCCCC---CCCCCCCcCCCeEEeCCCCcEEEEEEECCCCC
Confidence            499999999999999997653                 5889986   679995  999999865  3489999999999


Q ss_pred             ccccccCCcccccCCCCCeEECCC-CCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCc
Q 040113          113 LYGSINSSSSLFKLVHLEWLNLAF-NDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGL  191 (887)
Q Consensus       113 l~~~~~~~~~l~~l~~L~~L~L~~-n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l  191 (887)
                      +.|..+-+.+++++++|++|+|++ |++.+. +|+.|+++++|++|+|++|++.+..|..+..+.+|++++++.|     
T Consensus        62 l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~-iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N-----  135 (313)
T d1ogqa_          62 LPKPYPIPSSLANLPYLNFLYIGGINNLVGP-IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYN-----  135 (313)
T ss_dssp             CSSCEECCGGGGGCTTCSEEEEEEETTEESC-CCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSS-----
T ss_pred             CCCCCCCChHHhcCccccccccccccccccc-cccccccccccchhhhccccccccccccccchhhhcccccccc-----
Confidence            887532222566666666666654 455543 5656666666666666666655555555555555555555544     


Q ss_pred             cccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCC-cEEeCcCCCCCCcc
Q 040113          192 ELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKL-LHLDLSLNELLGEL  270 (887)
Q Consensus       192 ~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L-~~L~Ls~n~l~~~~  270 (887)
                                               .+.+.+|..+++++.|+++++++|.+.+.+|..+..+..+ +.+++++|++++..
T Consensus       136 -------------------------~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~  190 (313)
T d1ogqa_         136 -------------------------ALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI  190 (313)
T ss_dssp             -------------------------EEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEEC
T ss_pred             -------------------------cccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccc
Confidence                                     4445555556666666666666666665566555555554 55666666666555


Q ss_pred             hhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCC
Q 040113          271 PVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGN  350 (887)
Q Consensus       271 p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~  350 (887)
                      |..+..+..+ ++++..+...+.+|..+..+++|+.+++++|.+.+.++ .  ++.+++|+.|++++|+++|.+|..+++
T Consensus       191 ~~~~~~l~~~-~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~--~~~~~~L~~L~Ls~N~l~g~iP~~l~~  266 (313)
T d1ogqa_         191 PPTFANLNLA-FVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-K--VGLSKNLNGLDLRNNRIYGTLPQGLTQ  266 (313)
T ss_dssp             CGGGGGCCCS-EEECCSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-G--CCCCTTCCEEECCSSCCEECCCGGGGG
T ss_pred             cccccccccc-cccccccccccccccccccccccccccccccccccccc-c--cccccccccccCccCeecccCChHHhC
Confidence            5555554333 56666666666666666666666666666666655443 2  455666666666666666666666666


Q ss_pred             CCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCC
Q 040113          351 LRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNS  387 (887)
Q Consensus       351 l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~  387 (887)
                      +++|++|+|++|+++|.+|. ++++++|+.+++++|+
T Consensus       267 L~~L~~L~Ls~N~l~g~iP~-~~~L~~L~~l~l~~N~  302 (313)
T d1ogqa_         267 LKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNK  302 (313)
T ss_dssp             CTTCCEEECCSSEEEEECCC-STTGGGSCGGGTCSSS
T ss_pred             CCCCCEEECcCCcccccCCC-cccCCCCCHHHhCCCc
Confidence            66666666666666666653 4556666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=1.7e-31  Score=284.66  Aligned_cols=259  Identities=34%  Similarity=0.516  Sum_probs=203.8

Q ss_pred             CCCeEEcCCCccCC--CCCCcccccCCcceEEecCC-CcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113          549 SLEILVLSHNNLSG--LLPRCLGSFSDKLSILDLRA-NNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF  625 (887)
Q Consensus       549 ~L~~L~Ls~n~l~~--~~p~~l~~l~~~L~~L~L~~-N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  625 (887)
                      +++.|+|++|.++|  .+|..+++++ +|++|+|++ |+++|.+|..|.++++|++|+|++|++.+..+..+..+..|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence            46666666666665  3566676666 577777765 6666667777777777777777777777777766777777777


Q ss_pred             EeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCC-CEEEcCCCcCcccCChhhhhccccchhcccC
Q 040113          626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKL-RIIDLSNNRFTGKLPSKSFLCWNAMKIVNTS  704 (887)
Q Consensus       626 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L-~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~  704 (887)
                      +++++|++.+.+|..+..++.|+++++++|.+.+.+|...  ..+..+ +.+++++|++++..|... ..          
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~--~~l~~l~~~l~~~~n~l~~~~~~~~-~~----------  196 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSY--GSFSKLFTSMTISRNRLTGKIPPTF-AN----------  196 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGG--GCCCTTCCEEECCSSEEEEECCGGG-GG----------
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccccc--ccccccccccccccccccccccccc-cc----------
Confidence            7777777777777777777777777777777776666544  444444 778888888887766431 11          


Q ss_pred             CccccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccc
Q 040113          705 DLKYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQ  784 (887)
Q Consensus       705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~  784 (887)
                                                                .....++++++.+.|.+|..++.+++|+.|++++|.++
T Consensus       197 ------------------------------------------l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~  234 (313)
T d1ogqa_         197 ------------------------------------------LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA  234 (313)
T ss_dssp             ------------------------------------------CCCSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred             ------------------------------------------cccccccccccccccccccccccccccccccccccccc
Confidence                                                      12346889999999999999999999999999999999


Q ss_pred             ccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCCCCcCccccccccCCCcCCCCCCCCCCC
Q 040113          785 GHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQGRQFATFDNSSFESNSGLCGRPLSREC  864 (887)
Q Consensus       785 ~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~~n~~lcg~~~~~~c  864 (887)
                      +.+| .++.+++|+.|||++|+++|.+|+.++++++|++|+|++|+|+|.||+.+.+..+....+.||+.+||.|++ .|
T Consensus       235 ~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~~L~~L~~l~l~~N~~l~g~plp-~c  312 (313)
T d1ogqa_         235 FDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSPLP-AC  312 (313)
T ss_dssp             CBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTTGGGSCGGGTCSSSEEESTTSS-CC
T ss_pred             cccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcccCCCCCHHHhCCCccccCCCCC-CC
Confidence            8876 588999999999999999999999999999999999999999999999888889999999999999999985 67


Q ss_pred             C
Q 040113          865 E  865 (887)
Q Consensus       865 ~  865 (887)
                      .
T Consensus       313 ~  313 (313)
T d1ogqa_         313 T  313 (313)
T ss_dssp             C
T ss_pred             C
Confidence            3

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=1.1e-24  Score=239.11  Aligned_cols=103  Identities=26%  Similarity=0.382  Sum_probs=52.1

Q ss_pred             CCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEE
Q 040113          229 LSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELD  308 (887)
Q Consensus       229 l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~  308 (887)
                      +.+|++|+++++.++..  +.+..+++|++|++++|++++. + .++++++|++|++++|.+.+..  .++.+++|+.|+
T Consensus        43 l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~~i~--~l~~l~~L~~L~  116 (384)
T d2omza2          43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADIT--PLANLTNLTGLT  116 (384)
T ss_dssp             HTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCCG--GGTTCTTCCEEE
T ss_pred             hCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCccccccccccccccccc--cccccccccccc
Confidence            34455555555555432  2344555566666666655533 2 2555566666666666655332  255566666666


Q ss_pred             ccCCcCCCCCCchhhccCCCCccEEEccCCCCC
Q 040113          309 LSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFS  341 (887)
Q Consensus       309 L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~  341 (887)
                      ++++.+++..+    ......+.......+.+.
T Consensus       117 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~  145 (384)
T d2omza2         117 LFNNQITDIDP----LKNLTNLNRLELSSNTIS  145 (384)
T ss_dssp             CCSSCCCCCGG----GTTCTTCSEEEEEEEEEC
T ss_pred             ccccccccccc----cccccccccccccccccc
Confidence            66555553222    223344455555444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.94  E-value=2.4e-24  Score=236.29  Aligned_cols=236  Identities=25%  Similarity=0.296  Sum_probs=113.4

Q ss_pred             ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113          124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE  203 (887)
Q Consensus       124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~  203 (887)
                      ..+.+|++|+++++.++..   +.++.+++|++|++++|++++ +| .++++++|++|++++|++..+.        .++
T Consensus        41 ~~l~~l~~L~l~~~~I~~l---~gl~~L~nL~~L~Ls~N~l~~-l~-~l~~L~~L~~L~L~~n~i~~i~--------~l~  107 (384)
T d2omza2          41 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTD-IT-PLKNLTKLVDILMNNNQIADIT--------PLA  107 (384)
T ss_dssp             HHHTTCCEEECCSSCCCCC---TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCCG--------GGT
T ss_pred             HHhCCCCEEECCCCCCCCc---cccccCCCCCEEeCcCCcCCC-Cc-cccCCccccccccccccccccc--------ccc
Confidence            3456677777777776642   356667777777777777654 33 2666777777777777643321        255


Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      .+++|+.|+++++.+.+..+  ......+..+....+.+....+..................     ...+...+.....
T Consensus       108 ~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  180 (384)
T d2omza2         108 NLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTD-----LKPLANLTTLERL  180 (384)
T ss_dssp             TCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGGTTCTTCSEEEEEESCCC-----CGGGTTCTTCCEE
T ss_pred             cccccccccccccccccccc--ccccccccccccccccccccccccccccccccccccccch-----hhhhccccccccc
Confidence            66666666666666554433  2333455555555554433222221111111111111111     1123333334444


Q ss_pred             EccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCc
Q 040113          284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCN  363 (887)
Q Consensus       284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~  363 (887)
                      ....+...  ....+..+++++.+++++|.+++..+    ....++|++|++++|.++.  ...+..+++|+.|++++|.
T Consensus       181 ~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~----~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~  252 (384)
T d2omza2         181 DISSNKVS--DISVLAKLTNLESLIATNNQISDITP----LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQ  252 (384)
T ss_dssp             ECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG----GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSC
T ss_pred             cccccccc--cccccccccccceeeccCCccCCCCc----ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCc
Confidence            44443332  22334445555555555555553322    2334455555555555442  1234444455555555554


Q ss_pred             CCccCCccccCCCCCCEEEcCCCCCc
Q 040113          364 FSGRIPSSLRNLTQLITLDLSQNSYR  389 (887)
Q Consensus       364 i~~~~~~~l~~l~~L~~L~L~~n~l~  389 (887)
                      +++..  .+..+++|++|+++++.+.
T Consensus       253 l~~~~--~~~~~~~L~~L~l~~~~l~  276 (384)
T d2omza2         253 ISNLA--PLSGLTKLTELKLGANQIS  276 (384)
T ss_dssp             CCCCG--GGTTCTTCSEEECCSSCCC
T ss_pred             cCCCC--cccccccCCEeeccCcccC
Confidence            44322  1334444444444444443

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=4.2e-22  Score=210.45  Aligned_cols=267  Identities=22%  Similarity=0.257  Sum_probs=192.8

Q ss_pred             ccccceEecCCCCcEEEEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCC-ccccCCCCCCEEECCCCCCCcc
Q 040113           89 CSWDGVECSENTGHVMKLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIP-SEIINLSRLSYLNLSHSSFFGQ  167 (887)
Q Consensus        89 c~w~gv~c~~~~~~v~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp-~~~~~l~~L~~L~Ls~n~~~~~  167 (887)
                      |.|++|.|+..            +++ .+|.  .+.  +.+++|+|++|+++.  +| ..|.++++|++|++++|.+...
T Consensus        10 c~~~~~~C~~~------------~L~-~lP~--~l~--~~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~l~~n~~~~i   70 (305)
T d1xkua_          10 CHLRVVQCSDL------------GLE-KVPK--DLP--PDTALLDLQNNKITE--IKDGDFKNLKNLHTLILINNKISKI   70 (305)
T ss_dssp             EETTEEECTTS------------CCC-SCCC--SCC--TTCCEEECCSSCCCC--BCTTTTTTCTTCCEEECCSSCCCCB
T ss_pred             ecCCEEEecCC------------CCC-ccCC--CCC--CCCCEEECcCCcCCC--cChhHhhcccccccccccccccccc
Confidence            88999999642            222 3333  332  579999999999985  55 4689999999999999999877


Q ss_pred             CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCC--Cc
Q 040113          168 IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQ--GR  245 (887)
Q Consensus       168 ~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~--~~  245 (887)
                      .|..|.++++|++|++++|++..++         ......++.|++..|.+.+..+..+.....++.++...+...  ..
T Consensus        71 ~~~~f~~l~~L~~L~l~~n~l~~l~---------~~~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          71 SPGAFAPLVKLERLYLSKNQLKELP---------EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             CTTTTTTCTTCCEEECCSSCCSBCC---------SSCCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             chhhhhCCCccCEecccCCccCcCc---------cchhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCC
Confidence            7888999999999999999865553         123457888888888888777777777788888888777543  23


Q ss_pred             cccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhcc
Q 040113          246 IQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIG  325 (887)
Q Consensus       246 ~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~  325 (887)
                      .+..+..+++|+++++++|.+. .+|..  .+++|++|++++|...+..+..+.+++.+++|++++|.+.+..+..  +.
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~--~~  216 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LA  216 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GG
T ss_pred             CccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccc--cc
Confidence            3455677788888888888775 34433  2567888888888877777777777888888888888777555544  66


Q ss_pred             CCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCcc------ccCCCCCCEEEcCCCCCc
Q 040113          326 NFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSS------LRNLTQLITLDLSQNSYR  389 (887)
Q Consensus       326 ~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~------l~~l~~L~~L~L~~n~l~  389 (887)
                      ++++|++|+|++|+++ .+|..+..+++|++|++++|+++..-...      ...+.+|+.|++++|++.
T Consensus       217 ~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         217 NTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             GSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            7777888888877776 45667777777777777777776432222      233455666666666553

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.90  E-value=9.2e-22  Score=207.82  Aligned_cols=152  Identities=18%  Similarity=0.232  Sum_probs=124.6

Q ss_pred             ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCC
Q 040113          541 PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINC  620 (887)
Q Consensus       541 ~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l  620 (887)
                      +..+..+++|+.+++++|.++ .+|..+  .+ +|+.|++++|.+++..+..|..++.+++|++++|.+.+..+..+.++
T Consensus       143 ~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~-~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         143 NGAFQGMKKLSYIRIADTNIT-TIPQGL--PP-SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             TTGGGGCTTCCEEECCSSCCC-SCCSSC--CT-TCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             ccccccccccCccccccCCcc-ccCccc--CC-ccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            345677888999999999887 445443  23 79999999999999989999999999999999999999889999999


Q ss_pred             CCCcEEeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCcc----ccCCCCCCEEEcCCCcCc-ccCChhhhhcc
Q 040113          621 SKLEFLDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRI----DCGFSKLRIIDLSNNRFT-GKLPSKSFLCW  695 (887)
Q Consensus       621 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~----~~~l~~L~~L~Ls~N~l~-~~ip~~~~~~~  695 (887)
                      ++|++|+|++|+++.+ |.+|..+++|++|+|++|+++.+....+.    .....+|+.|+|++|++. ..++...|.++
T Consensus       219 ~~L~~L~L~~N~L~~l-p~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~~~~~~~~~f~~~  297 (305)
T d1xkua_         219 PHLRELHLNNNKLVKV-PGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV  297 (305)
T ss_dssp             TTCCEEECCSSCCSSC-CTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTC
T ss_pred             ccceeeeccccccccc-ccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCccCcCCHhHhccc
Confidence            9999999999999866 77899999999999999999876443331    245688999999999985 56777777664


Q ss_pred             cc
Q 040113          696 NA  697 (887)
Q Consensus       696 ~~  697 (887)
                      ..
T Consensus       298 ~~  299 (305)
T d1xkua_         298 YV  299 (305)
T ss_dssp             CC
T ss_pred             cc
Confidence            43

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.2e-22  Score=212.18  Aligned_cols=226  Identities=21%  Similarity=0.250  Sum_probs=182.5

Q ss_pred             eEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCC-C
Q 040113          552 ILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIG-D  630 (887)
Q Consensus       552 ~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~-~  630 (887)
                      .++.+++.++ .+|..+.   +++++|+|++|+|++..+.+|.++++|++|++++|++.+..+..+..++.++.+... .
T Consensus        15 ~v~c~~~~L~-~iP~~ip---~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~   90 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP---AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN   90 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC---TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSC
T ss_pred             EEEcCCCCCC-ccCCCCC---CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccc
Confidence            3556666666 5666443   368888888888887777788888889999999998888888888888888888764 6


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ  710 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~  710 (887)
                      |.+....+..|.++++|++|++++|.+....+..+  ...++|+.+++++|+++ .+|...|..                
T Consensus        91 ~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~--~~~~~L~~l~l~~N~l~-~i~~~~f~~----------------  151 (284)
T d1ozna_          91 AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLF--RGLAALQYLYLQDNALQ-ALPDDTFRD----------------  151 (284)
T ss_dssp             TTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCC-CCCTTTTTT----------------
T ss_pred             cccccccchhhcccccCCEEecCCccccccccccc--chhcccchhhhcccccc-ccChhHhcc----------------
Confidence            67777778888888999999999988876655444  56788899999999887 454432221                


Q ss_pred             cccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCcc
Q 040113          711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSC  790 (887)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  790 (887)
                                                         .+.|+.|++++|++++..+..|.++++|+.+++++|++++..|..
T Consensus       152 -----------------------------------~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~  196 (284)
T d1ozna_         152 -----------------------------------LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA  196 (284)
T ss_dssp             -----------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred             -----------------------------------ccchhhcccccCcccccchhhhccccccchhhhhhccccccChhH
Confidence                                               345788999999998888888889999999999999999888999


Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccC
Q 040113          791 LGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPI  835 (887)
Q Consensus       791 l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~i  835 (887)
                      |+++++|++||+++|++.+..|..++.+.+|++|++++|++.+.-
T Consensus       197 f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C  241 (284)
T d1ozna_         197 FRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDC  241 (284)
T ss_dssp             TTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSG
T ss_pred             hhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCc
Confidence            999999999999999999888888999999999999999988643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=3.1e-22  Score=208.95  Aligned_cols=234  Identities=22%  Similarity=0.295  Sum_probs=153.2

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEcc-CCeeeeeCCccccCCCCCcEE
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLS-HNLFQGRIPRSLINCSKLEFL  626 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls-~N~l~~~~~~~l~~l~~L~~L  626 (887)
                      +.+++|+|++|+|++..+..|.+++ +|++|++++|++.+..+..+.....++.+... .|.++...+..|.++++|++|
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L  110 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACR-NLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL  110 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccc-cccccccccccccccccccccccccccccccccccccccccchhhcccccCCEE
Confidence            3456666666666655555566665 56677777666666666666666666666543 445555556667777777777


Q ss_pred             eCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCc
Q 040113          627 DIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDL  706 (887)
Q Consensus       627 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~  706 (887)
                      ++++|.+....+..+...++|+.+++++|+++++.+..+  ..+++|+.|++++|++.+ +|...|..            
T Consensus       111 ~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f--~~~~~L~~L~l~~N~l~~-l~~~~f~~------------  175 (284)
T d1ozna_         111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTF--RDLGNLTHLFLHGNRISS-VPERAFRG------------  175 (284)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCE-ECTTTTTT------------
T ss_pred             ecCCcccccccccccchhcccchhhhccccccccChhHh--ccccchhhcccccCcccc-cchhhhcc------------
Confidence            777777766666666666777777777777766554443  456677777777777653 33222211            


Q ss_pred             cccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCccccc
Q 040113          707 KYLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGH  786 (887)
Q Consensus       707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~  786 (887)
                                                             .+.|+.+++++|++++..|..|+++++|++|++++|.+++.
T Consensus       176 ---------------------------------------l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~  216 (284)
T d1ozna_         176 ---------------------------------------LHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL  216 (284)
T ss_dssp             ---------------------------------------CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             ---------------------------------------ccccchhhhhhccccccChhHhhhhhhcccccccccccccc
Confidence                                                   34567777778877777777788888888888888888877


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccCcccccCCC
Q 040113          787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDNYLTGPIPQ  837 (887)
Q Consensus       787 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N~l~g~iP~  837 (887)
                      .|..|+++++|+.|+|++|++.+..+. ..-...++.+....+++.+..|.
T Consensus       217 ~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~p~  266 (284)
T d1ozna_         217 PTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQ  266 (284)
T ss_dssp             CHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEESG
T ss_pred             cccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCCch
Confidence            777778888888888888887765431 11123455566666777666654

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=1.1e-20  Score=194.82  Aligned_cols=130  Identities=26%  Similarity=0.284  Sum_probs=84.7

Q ss_pred             CcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcE
Q 040113          546 KLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEF  625 (887)
Q Consensus       546 ~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~  625 (887)
                      +...+.+++.+++.++ .+|..+.   +++++|+|++|+|++..+..|.++++|++|+|++|+++...  .+..+++|++
T Consensus         8 ~~~~~~~v~C~~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~   81 (266)
T d1p9ag_           8 KVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGT   81 (266)
T ss_dssp             CSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCE
T ss_pred             ccCCCeEEEccCCCCC-eeCcCcC---cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccc
Confidence            3455666788888877 4666543   36788888888887776677777778888888888777442  3456777777


Q ss_pred             EeCCCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCc
Q 040113          626 LDIGDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFT  684 (887)
Q Consensus       626 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~  684 (887)
                      |+|++|+++.. +..+..+++|++|++++|++.+..+..+  ..+.++++|++++|.+.
T Consensus        82 L~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~--~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_          82 LDLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGAL--RGLGELQELYLKGNELK  137 (266)
T ss_dssp             EECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTT--TTCTTCCEEECTTSCCC
T ss_pred             ccccccccccc-ccccccccccccccccccccceeecccc--ccccccccccccccccc
Confidence            77777777655 4456666777777776666655443332  34455555555555544

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=1.4e-19  Score=186.30  Aligned_cols=176  Identities=26%  Similarity=0.218  Sum_probs=81.3

Q ss_pred             CCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCC
Q 040113          153 RLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSL  232 (887)
Q Consensus       153 ~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L  232 (887)
                      ++++|+|++|.+.+..+..|.++++|++|+|++|.++.++        .++.+++|++|++++|++... +..+..+++|
T Consensus        32 ~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--------~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L  102 (266)
T d1p9ag_          32 DTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--------VDGTLPVLGTLDLSHNQLQSL-PLLGQTLPAL  102 (266)
T ss_dssp             TCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--------CCSCCTTCCEEECCSSCCSSC-CCCTTTCTTC
T ss_pred             CCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--------ccccccccccccccccccccc-cccccccccc
Confidence            4444444444443333334444444444444444432221        112334444444444444322 2334444555


Q ss_pred             CEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCC
Q 040113          233 TFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFN  312 (887)
Q Consensus       233 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n  312 (887)
                      ++|++++|.+....+..+..+.++++|++++|.+....+..+..+++++++++++|++++..+..|..+++|++|+|++|
T Consensus       103 ~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N  182 (266)
T d1p9ag_         103 TVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN  182 (266)
T ss_dssp             CEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred             ccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccCccccccccccceeecccC
Confidence            55555555544444444445555555555555554444444444555555555555555444444555555555555555


Q ss_pred             cCCCCCCchhhccCCCCccEEEccCCCC
Q 040113          313 KLSGEFPWSIVIGNFTQLQSLDFTSNKF  340 (887)
Q Consensus       313 ~l~~~~~~~~~~~~l~~L~~L~L~~n~l  340 (887)
                      +++ .+|..  +..+++|+.|+|++|.+
T Consensus       183 ~L~-~lp~~--~~~~~~L~~L~L~~Np~  207 (266)
T d1p9ag_         183 SLY-TIPKG--FFGSHLLPFAFLHGNPW  207 (266)
T ss_dssp             CCC-CCCTT--TTTTCCCSEEECCSCCB
T ss_pred             CCc-ccChh--HCCCCCCCEEEecCCCC
Confidence            554 44443  33444455555554443

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=9.3e-16  Score=164.69  Aligned_cols=137  Identities=31%  Similarity=0.312  Sum_probs=74.8

Q ss_pred             CCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEc
Q 040113          230 SSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDL  309 (887)
Q Consensus       230 ~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L  309 (887)
                      .++++|+++++.++ .+|+.   .++|++|++++|+++ .+|..   ..+|+.|++++|.++. +++ +  .+.|++|++
T Consensus        38 ~~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~-l~~-l--p~~L~~L~L  105 (353)
T d1jl5a_          38 RQAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA-LSD-L--PPLLEYLGV  105 (353)
T ss_dssp             HTCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC-CCS-C--CTTCCEEEC
T ss_pred             cCCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch-hhh-h--ccccccccc
Confidence            36777777777776 35542   456777777777776 45543   3466777777776652 221 1  124666666


Q ss_pred             cCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcCCCCC
Q 040113          310 SFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLSQNSY  388 (887)
Q Consensus       310 ~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~~n~l  388 (887)
                      ++|.+. .+|.   ++.+++|+.|+++++.+.... .   ....+..+.+.++....  ...+..++.++.+++++|..
T Consensus       106 ~~n~l~-~lp~---~~~l~~L~~L~l~~~~~~~~~-~---~~~~l~~l~~~~~~~~~--~~~l~~l~~l~~L~l~~n~~  174 (353)
T d1jl5a_         106 SNNQLE-KLPE---LQNSSFLKIIDVDNNSLKKLP-D---LPPSLEFIAAGNNQLEE--LPELQNLPFLTAIYADNNSL  174 (353)
T ss_dssp             CSSCCS-SCCC---CTTCTTCCEEECCSSCCSCCC-C---CCTTCCEEECCSSCCSS--CCCCTTCTTCCEEECCSSCC
T ss_pred             cccccc-cccc---hhhhccceeeccccccccccc-c---ccccccchhhccccccc--cccccccccceecccccccc
Confidence            666665 3442   445666666666666554221 1   12344455554443321  22344455555555555544

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.75  E-value=9.7e-16  Score=164.53  Aligned_cols=199  Identities=24%  Similarity=0.198  Sum_probs=94.1

Q ss_pred             CCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCC
Q 040113          128 HLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSN  207 (887)
Q Consensus       128 ~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~  207 (887)
                      ++++|||+++.++.  +|+.   .++|++|+|++|+++ .+|..   ..+|+.|++++|.+..+.    .+      .+.
T Consensus        39 ~l~~LdLs~~~L~~--lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l~----~l------p~~   99 (353)
T d1jl5a_          39 QAHELELNNLGLSS--LPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKALS----DL------PPL   99 (353)
T ss_dssp             TCSEEECTTSCCSC--CCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCCC----SC------CTT
T ss_pred             CCCEEEeCCCCCCC--CCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchhh----hh------ccc
Confidence            45555555555542  4432   345666666666654 44543   235566666666543332    01      124


Q ss_pred             CCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccC
Q 040113          208 LETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSI  287 (887)
Q Consensus       208 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~  287 (887)
                      |++|++++|.+... |. ++.+++|++|+++++.+....    .....+..+.+..+...  .+..+..++.++.+++.+
T Consensus       100 L~~L~L~~n~l~~l-p~-~~~l~~L~~L~l~~~~~~~~~----~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~  171 (353)
T d1jl5a_         100 LEYLGVSNNQLEKL-PE-LQNSSFLKIIDVDNNSLKKLP----DLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADN  171 (353)
T ss_dssp             CCEEECCSSCCSSC-CC-CTTCTTCCEEECCSSCCSCCC----CCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCS
T ss_pred             cccccccccccccc-cc-hhhhccceeeccccccccccc----cccccccchhhcccccc--ccccccccccceeccccc
Confidence            55666665555432 22 455566666666666554221    12344555555544432  123345555666666666


Q ss_pred             CCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEccCCCCCCccccccCCCCCccEEEccCCcCC
Q 040113          288 NNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFTSNKFSGELHASIGNLRSLEVLAIGRCNFS  365 (887)
Q Consensus       288 n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~  365 (887)
                      |..... +.   .....+.+....+.+. .++.   ...++.|+.+++++|.... ++.   ...++..+.+..+.+.
T Consensus       172 n~~~~~-~~---~~~~~~~l~~~~~~~~-~~~~---~~~l~~L~~l~l~~n~~~~-~~~---~~~~l~~~~~~~~~~~  237 (353)
T d1jl5a_         172 NSLKKL-PD---LPLSLESIVAGNNILE-ELPE---LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLT  237 (353)
T ss_dssp             SCCSSC-CC---CCTTCCEEECCSSCCS-SCCC---CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCS
T ss_pred             cccccc-cc---cccccccccccccccc-cccc---ccccccccccccccccccc-ccc---cccccccccccccccc
Confidence            555421 11   1123344444444333 2221   3345556666666555432 221   2334555555555443

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.73  E-value=2.1e-17  Score=165.55  Aligned_cols=205  Identities=20%  Similarity=0.280  Sum_probs=145.5

Q ss_pred             CeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCC
Q 040113          551 EILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGD  630 (887)
Q Consensus       551 ~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~  630 (887)
                      ..++++.+.+++.+  .+..+. +|+.|++++|.++..  ..+..+++|++|++++|++++..|  +..+++|+++++++
T Consensus        22 ~~~~l~~~~~~d~~--~~~~l~-~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~   94 (227)
T d1h6ua2          22 IKIAAGKSNVTDTV--TQADLD-GITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSG   94 (227)
T ss_dssp             HHHHTTCSSTTSEE--CHHHHH-TCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCS
T ss_pred             HHHHhCCCCcCCcC--CHHHcC-CcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccc
Confidence            34455666665443  233444 577777777777643  246777777788888777775443  67778888888888


Q ss_pred             CcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCccccc
Q 040113          631 NQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLKYLQ  710 (887)
Q Consensus       631 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~~~~  710 (887)
                      |.++..  ..+..+++|+.+++++|...+..+.    ...+.+..++++++.+....+..                    
T Consensus        95 n~~~~i--~~l~~l~~L~~l~l~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~--------------------  148 (227)
T d1h6ua2          95 NPLKNV--SAIAGLQSIKTLDLTSTQITDVTPL----AGLSNLQVLYLDLNQITNISPLA--------------------  148 (227)
T ss_dssp             CCCSCC--GGGTTCTTCCEEECTTSCCCCCGGG----TTCTTCCEEECCSSCCCCCGGGG--------------------
T ss_pred             cccccc--ccccccccccccccccccccccchh----ccccchhhhhchhhhhchhhhhc--------------------
Confidence            877754  3577788888888888776654321    34567777887777665322110                    


Q ss_pred             cccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCEEeCCCCcccccCCcc
Q 040113          711 DVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSC  790 (887)
Q Consensus       711 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~  790 (887)
                                                        ..+.|+.|++++|.+++..  .++++++|++|+|++|++++. | .
T Consensus       149 ----------------------------------~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~  190 (227)
T d1h6ua2         149 ----------------------------------GLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNKISDI-S-P  190 (227)
T ss_dssp             ----------------------------------GCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCC-G-G
T ss_pred             ----------------------------------cccccccccccccccccch--hhcccccceecccCCCccCCC-h-h
Confidence                                              1456888999999887543  388899999999999999864 3 3


Q ss_pred             ccCCCCCCEEeCCCCcccccCCccccCCCCCCeeeccc
Q 040113          791 LGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSD  828 (887)
Q Consensus       791 l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~  828 (887)
                      ++++++|++|+|++|++++..|  ++++++|++|++++
T Consensus       191 l~~l~~L~~L~Ls~N~lt~i~~--l~~l~~L~~L~lsn  226 (227)
T d1h6ua2         191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN  226 (227)
T ss_dssp             GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEE
T ss_pred             hcCCCCCCEEECcCCcCCCCcc--cccCCCCCEEEeeC
Confidence            8899999999999999986543  88999999999974

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.73  E-value=1.3e-19  Score=202.97  Aligned_cols=66  Identities=26%  Similarity=0.276  Sum_probs=30.7

Q ss_pred             hCcCCCCeEEcCCCccCCC----CCCcccccCCcceEEecCCCccccc----CCccccCCCcccEEEccCCeee
Q 040113          545 CKLDSLEILVLSHNNLSGL----LPRCLGSFSDKLSILDLRANNFFGT----IPNTFMKESRLGMIDLSHNLFQ  610 (887)
Q Consensus       545 ~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~~L~~L~L~~N~l~~~----~~~~~~~l~~L~~L~Ls~N~l~  610 (887)
                      ...++|++|+|++|+++..    ++..+......|++|+|++|+++..    ++..+..+++|++|+|++|+++
T Consensus       337 ~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         337 AQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred             ccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence            3445566666666665432    1222221111455555555555432    2223344455555555555554

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=8.9e-17  Score=160.83  Aligned_cols=203  Identities=24%  Similarity=0.270  Sum_probs=111.9

Q ss_pred             EEEcCCCcccccccCCcccccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEcc
Q 040113          105 KLDLSNSCLYGSINSSSSLFKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLS  184 (887)
Q Consensus       105 ~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~  184 (887)
                      .++++.+.+.+.+    .+..+.+|++|++.+|+++.  + +.+..+++|++|++++|.+.+..|  +.++++|++++++
T Consensus        23 ~~~l~~~~~~d~~----~~~~l~~L~~L~l~~~~i~~--l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~   93 (227)
T d1h6ua2          23 KIAAGKSNVTDTV----TQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELS   93 (227)
T ss_dssp             HHHTTCSSTTSEE----CHHHHHTCCEEECTTSCCCC--C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECC
T ss_pred             HHHhCCCCcCCcC----CHHHcCCcCEEECCCCCCCc--c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccc
Confidence            3445555554432    44566777778888777764  3 347777778888887777755333  6777777777777


Q ss_pred             CCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCC
Q 040113          185 LNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLN  264 (887)
Q Consensus       185 ~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n  264 (887)
                      +|.++.+.        .+..+++|++++++++...+..  .+...+.++.+.++++.+...  ..+..+++|++|++++|
T Consensus        94 ~n~~~~i~--------~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~--~~~~~~~~L~~L~l~~n  161 (227)
T d1h6ua2          94 GNPLKNVS--------AIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNA  161 (227)
T ss_dssp             SCCCSCCG--------GGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCC--GGGGGCTTCCEEECCSS
T ss_pred             cccccccc--------cccccccccccccccccccccc--hhccccchhhhhchhhhhchh--hhhcccccccccccccc
Confidence            77643322        3455666666666666554332  244455555666555554432  12444555555555555


Q ss_pred             CCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEcc
Q 040113          265 ELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT  336 (887)
Q Consensus       265 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  336 (887)
                      .+.+..  .++++++|++|++++|++++. + .++++++|++|++++|++++ ++.   ++++++|+.|+++
T Consensus       162 ~~~~~~--~l~~l~~L~~L~Ls~n~l~~l-~-~l~~l~~L~~L~Ls~N~lt~-i~~---l~~l~~L~~L~ls  225 (227)
T d1h6ua2         162 QVSDLT--PLANLSKLTTLKADDNKISDI-S-PLASLPNLIEVHLKNNQISD-VSP---LANTSNLFIVTLT  225 (227)
T ss_dssp             CCCCCG--GGTTCTTCCEEECCSSCCCCC-G-GGGGCTTCCEEECTTSCCCB-CGG---GTTCTTCCEEEEE
T ss_pred             ccccch--hhcccccceecccCCCccCCC-h-hhcCCCCCCEEECcCCcCCC-Ccc---cccCCCCCEEEee
Confidence            554321  245555555555555555432 2 24455555555555555542 221   4445555555543

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.72  E-value=1.8e-17  Score=168.03  Aligned_cols=223  Identities=18%  Similarity=0.133  Sum_probs=165.3

Q ss_pred             CCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeC-CccccCCCCCcEEeC
Q 040113          550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRI-PRSLINCSKLEFLDI  628 (887)
Q Consensus       550 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~-~~~l~~l~~L~~L~L  628 (887)
                      .+.++.++..++ .+|+.+.   .++++|++++|+++...+.+|.++++|++|++++|.+...+ +.+|.+++.++++.+
T Consensus        10 ~~~i~c~~~~l~-~iP~~l~---~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~   85 (242)
T d1xwdc1          10 NRVFLCQESKVT-EIPSDLP---RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRI   85 (242)
T ss_dssp             SSEEEEESCSCS-SCCSCSC---SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEE
T ss_pred             CCEEEEeCCCCC-CcCCCCC---CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccc
Confidence            367788888777 6776553   36999999999998877778999999999999999887644 557888999999987


Q ss_pred             C-CCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChhhhhccccchhcccCCcc
Q 040113          629 G-DNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSKSFLCWNAMKIVNTSDLK  707 (887)
Q Consensus       629 ~-~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~~~~~~~~l~~l~~~~~~  707 (887)
                      . .|++....+..|..+++|+++++++|.+....+.. ....+..+..+..+++.+. .++...|.              
T Consensus        86 ~~~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~-~~~~l~~l~~~~~~n~~l~-~i~~~~~~--------------  149 (242)
T d1xwdc1          86 EKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH-KIHSLQKVLLDIQDNINIH-TIERNSFV--------------  149 (242)
T ss_dssp             ECCTTCCEECTTSEECCTTCCEEEEESCCCCSCCCCT-TTCBSSCEEEEEESCTTCC-EECTTSST--------------
T ss_pred             cccccccccccccccccccccccccchhhhccccccc-ccccccccccccccccccc-cccccccc--------------
Confidence            6 46888888888999999999999999887553322 2234555656666666554 33322111              


Q ss_pred             ccccccCCccccccccccccccceeeeeccccccccccCCceeEEEeecCcCCccChhhhhcccCCCE-EeCCCCccccc
Q 040113          708 YLQDVISPKEWLLSDEVATYDYSLKMNNKGQIMTYDKVPDILTSIILSSNRFDGMIPTSIANLKGLQV-LNLDNNNLQGH  786 (887)
Q Consensus       708 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~N~l~~~ip~~l~~l~~L~~-L~Ls~N~l~~~  786 (887)
                                                          .....++.|++++|+++...+..+ ...+++. +++++|+++..
T Consensus       150 ------------------------------------~~~~~l~~L~l~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l  192 (242)
T d1xwdc1         150 ------------------------------------GLSFESVILWLNKNGIQEIHNCAF-NGTQLDELNLSDNNNLEEL  192 (242)
T ss_dssp             ------------------------------------TSBSSCEEEECCSSCCCEECTTTT-TTCCEEEEECTTCTTCCCC
T ss_pred             ------------------------------------cccccceeeecccccccccccccc-cchhhhccccccccccccc
Confidence                                                113457889999999996555444 4455544 46788889866


Q ss_pred             CCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeecccC
Q 040113          787 IPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNVSDN  829 (887)
Q Consensus       787 ~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~ls~N  829 (887)
                      .+..|.++++|++|||++|+++...+..|.+++.|+++++.+.
T Consensus       193 ~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~~~l  235 (242)
T d1xwdc1         193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNL  235 (242)
T ss_dssp             CTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSEESS
T ss_pred             cHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcCCCC
Confidence            5667899999999999999999776777888888888877543

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=3.1e-19  Score=199.88  Aligned_cols=19  Identities=42%  Similarity=0.261  Sum_probs=10.9

Q ss_pred             hhhCcCCCCeEEcCCCccC
Q 040113          543 WLCKLDSLEILVLSHNNLS  561 (887)
Q Consensus       543 ~~~~l~~L~~L~Ls~n~l~  561 (887)
                      .+..+++|++|++++|+++
T Consensus       392 ~l~~~~~L~~L~Ls~N~i~  410 (460)
T d1z7xw1         392 TLLANHSLRELDLSNNCLG  410 (460)
T ss_dssp             HHHHCCCCCEEECCSSSCC
T ss_pred             HHhcCCCCCEEECCCCcCC
Confidence            3444556666666666654

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=9.7e-17  Score=155.71  Aligned_cols=135  Identities=20%  Similarity=0.231  Sum_probs=114.8

Q ss_pred             CCeEEcCCCccCCCCCCcccccCCcceEEecCCCccccc-CCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeC
Q 040113          550 LEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGT-IPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDI  628 (887)
Q Consensus       550 L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~-~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L  628 (887)
                      .+.++.++++++ .+|..+.   .++++|+|++|+|++. .+..|..+++|+.|++++|++.+..+..|..+++|++|+|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp---~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~L   85 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP---LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL   85 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC---TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEEC
T ss_pred             CCEEEEeCCCcC-ccCCCCC---CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeee
Confidence            457888888887 6776553   3799999999999764 4567889999999999999999888899999999999999


Q ss_pred             CCCcCCCCCCccccCCCCCCEEEccCCcccccCCCCccccCCCCCCEEEcCCCcCcccCChh
Q 040113          629 GDNQIRDIFPSWLGTLPNLTVLILQSNKFYGIIREPRIDCGFSKLRIIDLSNNRFTGKLPSK  690 (887)
Q Consensus       629 ~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~ip~~  690 (887)
                      ++|++.++.+.+|.++++|++|+|++|+++++.+..+  ..+++|++++|++|++.+..+..
T Consensus        86 s~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f--~~l~~L~~l~L~~N~~~~~~~~~  145 (192)
T d1w8aa_          86 GENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSF--EHLNSLTSLNLASNPFNCNCHLA  145 (192)
T ss_dssp             CSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSS--TTCTTCCEEECTTCCBCCSGGGH
T ss_pred             ccccccccCHHHHhCCCcccccccCCccccccCHHHh--cCCcccccccccccccccccchH
Confidence            9999999988899999999999999999998877765  67889999999999987655433

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.66  E-value=2.1e-15  Score=147.00  Aligned_cols=149  Identities=28%  Similarity=0.322  Sum_probs=77.6

Q ss_pred             ccCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhh
Q 040113          124 FKLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVE  203 (887)
Q Consensus       124 ~~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~  203 (887)
                      ..+.++++|+++++.++..   +.++.+++|++|++++|.+++..|  ++++++|++|+++.|.+..++        .++
T Consensus        37 ~~l~~l~~L~l~~~~i~~l---~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--------~l~  103 (199)
T d2omxa2          37 TDLDQVTTLQADRLGIKSI---DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--------PLA  103 (199)
T ss_dssp             HHHTTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--------GGT
T ss_pred             HHhcCCCEEECCCCCCCCc---cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--------ccc
Confidence            4566777777777777642   346677777777777777654322  666777777777766532221        244


Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      ++++|++|+++++......  .+..+++|+.|++++|++...  +.+..+++|++|++.+|++++. + .++++++|++|
T Consensus       104 ~l~~L~~L~l~~~~~~~~~--~~~~l~~L~~L~l~~n~l~~~--~~l~~~~~L~~L~l~~n~l~~l-~-~l~~l~~L~~L  177 (199)
T d2omxa2         104 NLTNLTGLTLFNNQITDID--PLKNLTNLNRLELSSNTISDI--SALSGLTSLQQLNFSSNQVTDL-K-PLANLTTLERL  177 (199)
T ss_dssp             TCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCC-G-GGTTCTTCCEE
T ss_pred             ccccccccccccccccccc--ccchhhhhHHhhhhhhhhccc--ccccccccccccccccccccCC-c-cccCCCCCCEE
Confidence            5555555555555443321  244444455555554444321  1244444444444444444322 1 24444444444


Q ss_pred             EccCCCCC
Q 040113          284 DLSINNLS  291 (887)
Q Consensus       284 ~L~~n~l~  291 (887)
                      ++++|+++
T Consensus       178 ~ls~N~i~  185 (199)
T d2omxa2         178 DISSNKVS  185 (199)
T ss_dssp             ECCSSCCC
T ss_pred             ECCCCCCC
Confidence            44444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.5e-15  Score=149.34  Aligned_cols=165  Identities=25%  Similarity=0.293  Sum_probs=82.3

Q ss_pred             cCCCCCeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhc
Q 040113          125 KLVHLEWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEK  204 (887)
Q Consensus       125 ~l~~L~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~  204 (887)
                      .+..|++|++++|.++..   ..+..+++|++|++++|.+++ ++ .++.+++|++|++++|+++.+       + .+..
T Consensus        44 ~L~~L~~L~l~~~~i~~l---~~l~~l~~L~~L~L~~n~i~~-l~-~~~~l~~L~~L~l~~n~i~~l-------~-~l~~  110 (210)
T d1h6ta2          44 ELNSIDQIIANNSDIKSV---QGIQYLPNVTKLFLNGNKLTD-IK-PLANLKNLGWLFLDENKVKDL-------S-SLKD  110 (210)
T ss_dssp             HHHTCCEEECTTSCCCCC---TTGGGCTTCCEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCCG-------G-GGTT
T ss_pred             HhcCccEEECcCCCCCCc---hhHhhCCCCCEEeCCCccccC-cc-ccccCcccccccccccccccc-------c-cccc
Confidence            355666677776666542   235666666677776666654 22 245566666666666653322       1 2344


Q ss_pred             CCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEE
Q 040113          205 LSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLD  284 (887)
Q Consensus       205 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~  284 (887)
                      +++|+.|++++|.+...                          ..+..+++++.+++++|.+++.  ..+..+++|++++
T Consensus       111 l~~L~~L~l~~~~~~~~--------------------------~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l~  162 (210)
T d1h6ta2         111 LKKLKSLSLEHNGISDI--------------------------NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLS  162 (210)
T ss_dssp             CTTCCEEECTTSCCCCC--------------------------GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEE
T ss_pred             ccccccccccccccccc--------------------------cccccccccccccccccccccc--ccccccccccccc
Confidence            44555555544444321                          2234444444455544444321  2334445555555


Q ss_pred             ccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEEcc
Q 040113          285 LSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLDFT  336 (887)
Q Consensus       285 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~  336 (887)
                      +++|++++. + .++++++|++|++++|+++ .++ .  +.++++|++|+++
T Consensus       163 l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~-~l~-~--l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         163 LEDNQISDI-V-PLAGLTKLQNLYLSKNHIS-DLR-A--LAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCCEEECCSSCCC-BCG-G--GTTCTTCSEEEEE
T ss_pred             ccccccccc-c-cccCCCCCCEEECCCCCCC-CCh-h--hcCCCCCCEEEcc
Confidence            555555432 1 2445555555555555554 232 1  4455555555554

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=5.7e-15  Score=143.90  Aligned_cols=104  Identities=28%  Similarity=0.439  Sum_probs=41.8

Q ss_pred             cCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEE
Q 040113          204 KLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKL  283 (887)
Q Consensus       204 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L  283 (887)
                      .+++|++|++++|++++..+  ++++++|++|++++|.+... + .+.++++|++|++++|.+...  ..+..+++|+.|
T Consensus        60 ~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~~L  133 (199)
T d2omxa2          60 YLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADI-T-PLANLTNLTGLTLFNNQITDI--DPLKNLTNLNRL  133 (199)
T ss_dssp             GCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCSEE
T ss_pred             cCCCcCcCccccccccCccc--ccCCcccccccccccccccc-c-ccccccccccccccccccccc--cccchhhhhHHh
Confidence            33344444444444433221  44444444444444443321 1 234444444444444444321  123344444444


Q ss_pred             EccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113          284 DLSINNLSGELPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       284 ~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      ++++|.+.. + +.+..+++|++|++.+|+++
T Consensus       134 ~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~  163 (199)
T d2omxa2         134 ELSSNTISD-I-SALSGLTSLQQLNFSSNQVT  163 (199)
T ss_dssp             ECCSSCCCC-C-GGGTTCTTCSEEECCSSCCC
T ss_pred             hhhhhhhcc-c-cccccccccccccccccccc
Confidence            444444432 1 12344444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.62  E-value=4.5e-15  Score=145.95  Aligned_cols=164  Identities=25%  Similarity=0.323  Sum_probs=74.5

Q ss_pred             CCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCCEEEcccCCCCCccccccCCCC
Q 040113          175 LVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLTFLSLHSCGLQGRIQSSLGNLS  254 (887)
Q Consensus       175 l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~  254 (887)
                      +.+|++|++++|.+..+.        .++.+++|++|++++|.+++..+  ++.+++|++|++++|++++ ++ .+..++
T Consensus        45 L~~L~~L~l~~~~i~~l~--------~l~~l~~L~~L~L~~n~i~~l~~--~~~l~~L~~L~l~~n~i~~-l~-~l~~l~  112 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSVQ--------GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLK  112 (210)
T ss_dssp             HHTCCEEECTTSCCCCCT--------TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCT
T ss_pred             hcCccEEECcCCCCCCch--------hHhhCCCCCEEeCCCccccCccc--cccCccccccccccccccc-cc-cccccc
Confidence            445555555555433221        13444445555554444443221  3444555555555555443 22 344455


Q ss_pred             CCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCCCCCCchhhccCCCCccEEE
Q 040113          255 KLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLSGEFPWSIVIGNFTQLQSLD  334 (887)
Q Consensus       255 ~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~  334 (887)
                      +|+.|++++|.+.. + ..+..+++++.+++++|.+++.  ..+.                          .+++|+.++
T Consensus       113 ~L~~L~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~~--~~~~--------------------------~l~~L~~l~  162 (210)
T d1h6ta2         113 KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLS--------------------------RLTKLDTLS  162 (210)
T ss_dssp             TCCEEECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCCC--GGGG--------------------------GCTTCSEEE
T ss_pred             cccccccccccccc-c-cccccccccccccccccccccc--cccc--------------------------ccccccccc
Confidence            55555555554432 1 2344444444444444444321  1233                          444555555


Q ss_pred             ccCCCCCCccccccCCCCCccEEEccCCcCCccCCccccCCCCCCEEEcC
Q 040113          335 FTSNKFSGELHASIGNLRSLEVLAIGRCNFSGRIPSSLRNLTQLITLDLS  384 (887)
Q Consensus       335 L~~n~l~~~~~~~l~~l~~L~~L~L~~n~i~~~~~~~l~~l~~L~~L~L~  384 (887)
                      +++|++++. + .+.++++|++|++++|++++ ++ .+..+++|++|+++
T Consensus       163 l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~~-l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         163 LEDNQISDI-V-PLAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             CCSSCCCCC-G-GGTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEE
T ss_pred             ccccccccc-c-cccCCCCCCEEECCCCCCCC-Ch-hhcCCCCCCEEEcc
Confidence            555554432 1 24445555555555555542 22 35555555555554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.61  E-value=4.5e-16  Score=150.87  Aligned_cols=127  Identities=22%  Similarity=0.282  Sum_probs=57.0

Q ss_pred             EEeCCCcccccCCCCCCCCCcEEEccCccccccC-ChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcc
Q 040113          507 TLDLSSNNLQGPLPVPPSRTVNYLVSNNSFIGEI-PSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNF  585 (887)
Q Consensus       507 ~L~ls~n~l~~~~~~~~~~l~~l~l~~n~~~~~~-~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l  585 (887)
                      +++.+++.++.++...+..+++|++++|++++.+ +..|..+++|+.|++++|.+.+..+..+..++ +|++|++++|++
T Consensus        12 ~v~Cs~~~L~~iP~~lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~-~L~~L~Ls~N~l   90 (192)
T d1w8aa_          12 TVDCTGRGLKEIPRDIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGAS-HIQELQLGENKI   90 (192)
T ss_dssp             EEECTTSCCSSCCSCCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSCCC
T ss_pred             EEEEeCCCcCccCCCCCCCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccc-ccceeeeccccc
Confidence            3444444444322222233333334444333322 23344444555555555555444444444444 355555555554


Q ss_pred             cccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCC
Q 040113          586 FGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR  634 (887)
Q Consensus       586 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  634 (887)
                      ++..+.+|.++++|++|+|++|+|+++.+.+|..+++|++|+|++|.+.
T Consensus        91 ~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~  139 (192)
T d1w8aa_          91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN  139 (192)
T ss_dssp             CEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBC
T ss_pred             cccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccc
Confidence            4444444444444445555554444444444444444444444444443

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=3.3e-15  Score=151.01  Aligned_cols=98  Identities=16%  Similarity=0.037  Sum_probs=49.6

Q ss_pred             cCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEEeCCCCcCC
Q 040113          555 LSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFLDIGDNQIR  634 (887)
Q Consensus       555 Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L~L~~N~l~  634 (887)
                      ..++.+....+..+..++..++.|++++|+++...+..|.....++.+++++|+++...+..|.++++|++|+|++|+++
T Consensus       135 ~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         135 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             ESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTTTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccccccccccceeeecccccccccccccccchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            33333333333333333334556666666665544444433322333345555666444445666666666666666666


Q ss_pred             CCCCccccCCCCCCEEEc
Q 040113          635 DIFPSWLGTLPNLTVLIL  652 (887)
Q Consensus       635 ~~~~~~~~~l~~L~~L~L  652 (887)
                      ...+..|.++++|+++++
T Consensus       215 ~l~~~~~~~l~~L~~l~~  232 (242)
T d1xwdc1         215 SLPSYGLENLKKLRARST  232 (242)
T ss_dssp             CCCSSSCTTCCEEESSSE
T ss_pred             ccCHHHHcCCcccccCcC
Confidence            554445555555554444

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=2.8e-15  Score=154.90  Aligned_cols=179  Identities=23%  Similarity=0.203  Sum_probs=79.6

Q ss_pred             CCCCEEECCCCCCCcc-CCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCC-CCCCC-chhhhcC
Q 040113          152 SRLSYLNLSHSSFFGQ-IPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYV-SIRST-IPHNLAN  228 (887)
Q Consensus       152 ~~L~~L~Ls~n~~~~~-~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n-~~~~~-~~~~l~~  228 (887)
                      .+|++||+++|.+.+. ++..+..+++|++|+++++.+.      ...+..+..+++|++|+++++ .++.. +...+..
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~------~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~  119 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSS  119 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHH
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC------cHHHHHHhcCCCCcCccccccccccccccchhhHH
Confidence            3455555555444322 2222334455555555544311      122334444555555555543 23221 1111234


Q ss_pred             CCCCCEEEcccCC-CCCc-cccccC-CCCCCcEEeCcCCC--CCCc-chhhccCCCCCCEEEccCC-CCCCccchhhhCC
Q 040113          229 LSSLTFLSLHSCG-LQGR-IQSSLG-NLSKLLHLDLSLNE--LLGE-LPVSIGNLHSLKKLDLSIN-NLSGELPTSIQNL  301 (887)
Q Consensus       229 l~~L~~L~L~~n~-l~~~-~~~~l~-~l~~L~~L~Ls~n~--l~~~-~p~~l~~l~~L~~L~L~~n-~l~~~~~~~l~~l  301 (887)
                      +++|++|++++|. +++. +...+. ..++|+.|+++++.  ++.. +...+.++++|++|++++| .+++.....+.++
T Consensus       120 ~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~  199 (284)
T d2astb2         120 CSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL  199 (284)
T ss_dssp             CTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC
T ss_pred             HHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc
Confidence            4555555555542 2211 111121 23455555555431  2211 2222344556666666654 3444455555666


Q ss_pred             CCCCEEEccCC-cCCCCCCchhhccCCCCccEEEccCC
Q 040113          302 VSLEELDLSFN-KLSGEFPWSIVIGNFTQLQSLDFTSN  338 (887)
Q Consensus       302 ~~L~~L~L~~n-~l~~~~~~~~~~~~l~~L~~L~L~~n  338 (887)
                      ++|++|++++| .+++.....  ++++++|+.|+++++
T Consensus       200 ~~L~~L~L~~C~~i~~~~l~~--L~~~~~L~~L~l~~~  235 (284)
T d2astb2         200 NYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFGI  235 (284)
T ss_dssp             TTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTTS
T ss_pred             CcCCEEECCCCCCCChHHHHH--HhcCCCCCEEeeeCC
Confidence            66666666664 343332222  455666666666655

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=149.93  Aligned_cols=201  Identities=22%  Similarity=0.237  Sum_probs=100.9

Q ss_pred             CCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCCEEEccCCCCCCCchhhhcCCCCCC
Q 040113          154 LSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPHNLANLSSLT  233 (887)
Q Consensus       154 L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~  233 (887)
                      ...+.++....... ........+|++||++++.+.     ...+...+..+++|++|+++++.+++..+..++.+++|+
T Consensus        25 ~~~lrl~~~~~~~~-~~~~~~~~~L~~LdLs~~~i~-----~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~   98 (284)
T d2astb2          25 VIAFRCPRSFMDQP-LAEHFSPFRVQHMDLSNSVIE-----VSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLV   98 (284)
T ss_dssp             CSEEECTTCEECSC-CCSCCCCBCCCEEECTTCEEC-----HHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCS
T ss_pred             ceEeeccccccccc-hhhhccCCCCCEEECCCCccC-----HHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCc
Confidence            34455554443222 222334567888888877521     123455566777777777777777666666677777777


Q ss_pred             EEEcccCC-CCCc-cccccCCCCCCcEEeCcCCC-CCCc-chhhcc-CCCCCCEEEccCCC--CCCc-cchhhhCCCCCC
Q 040113          234 FLSLHSCG-LQGR-IQSSLGNLSKLLHLDLSLNE-LLGE-LPVSIG-NLHSLKKLDLSINN--LSGE-LPTSIQNLVSLE  305 (887)
Q Consensus       234 ~L~L~~n~-l~~~-~~~~l~~l~~L~~L~Ls~n~-l~~~-~p~~l~-~l~~L~~L~L~~n~--l~~~-~~~~l~~l~~L~  305 (887)
                      +|++++|. +++. +.....++++|++|++++|. ++.. +...+. ..++|+.|+++++.  ++.. +...+..+++|+
T Consensus        99 ~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~  178 (284)
T d2astb2          99 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLV  178 (284)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCS
T ss_pred             CccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhccccccccccccccccccccccc
Confidence            77777653 4321 11122455666666666653 2211 112222 23456666665542  2221 222223455555


Q ss_pred             EEEccCCc-CCCCCCchhhccCCCCccEEEccCC-CCCCccccccCCCCCccEEEccCC
Q 040113          306 ELDLSFNK-LSGEFPWSIVIGNFTQLQSLDFTSN-KFSGELHASIGNLRSLEVLAIGRC  362 (887)
Q Consensus       306 ~L~L~~n~-l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l~~l~~L~~L~L~~n  362 (887)
                      +|++++|. +++.....  +.++++|++|++++| .+++.....++++++|+.|++++|
T Consensus       179 ~L~L~~~~~itd~~~~~--l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~  235 (284)
T d2astb2         179 HLDLSDSVMLKNDCFQE--FFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI  235 (284)
T ss_dssp             EEECTTCTTCCGGGGGG--GGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred             ccccccccCCCchhhhh--hcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence            55555543 33333322  444555555555553 344333334444455555555444

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=7.2e-14  Score=149.03  Aligned_cols=113  Identities=22%  Similarity=0.220  Sum_probs=49.7

Q ss_pred             hhcCCCCCEEEccCCCCCCC----chhhhcCCCCCCEEEcccCCCCCcccc-------------ccCCCCCCcEEeCcCC
Q 040113          202 VEKLSNLETLDLGYVSIRST----IPHNLANLSSLTFLSLHSCGLQGRIQS-------------SLGNLSKLLHLDLSLN  264 (887)
Q Consensus       202 ~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~-------------~l~~l~~L~~L~Ls~n  264 (887)
                      +..+++|++|++++|.+...    +...+..+++|++|++++|.+......             .....+.|+.+++++|
T Consensus        89 l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n  168 (344)
T d2ca6a1          89 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN  168 (344)
T ss_dssp             HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred             HhhCCCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccc
Confidence            44445555555555554433    122233445555555555544311000             0123445555555555


Q ss_pred             CCCCc----chhhccCCCCCCEEEccCCCCCCc-----cchhhhCCCCCCEEEccCCcC
Q 040113          265 ELLGE----LPVSIGNLHSLKKLDLSINNLSGE-----LPTSIQNLVSLEELDLSFNKL  314 (887)
Q Consensus       265 ~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~-----~~~~l~~l~~L~~L~L~~n~l  314 (887)
                      .+...    +...+...+.|++|++++|.+...     +...+..+++|++|++++|.+
T Consensus       169 ~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         169 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             cccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccc
Confidence            54322    222333445555555555555421     122234445555555555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.43  E-value=2.7e-14  Score=152.40  Aligned_cols=218  Identities=18%  Similarity=0.137  Sum_probs=141.1

Q ss_pred             ccccCCCCCeEECCCCCCCCC---CCCccccCCCCCCEEECCCCCCCcc----------CCccccCCCCCcEEEccCCCC
Q 040113          122 SLFKLVHLEWLNLAFNDFKSS---EIPSEIINLSRLSYLNLSHSSFFGQ----------IPSEILELVNLVSLDLSLNSG  188 (887)
Q Consensus       122 ~l~~l~~L~~L~L~~n~~~~~---~lp~~~~~l~~L~~L~Ls~n~~~~~----------~p~~l~~l~~L~~L~l~~n~~  188 (887)
                      .+.....|++|+|++|.+...   .+...+...++|+.|+++++.....          +...+..+++|++|++++|.+
T Consensus        26 ~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n~i  105 (344)
T d2ca6a1          26 VLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF  105 (344)
T ss_dssp             HHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCC
T ss_pred             HHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccccc
Confidence            455677788888888876532   1223466778888888887654211          123345678888888888874


Q ss_pred             CCccccCCChHHHhhcCCCCCEEEccCCCCCCCchh-------------hhcCCCCCCEEEcccCCCCCc----cccccC
Q 040113          189 YGLELQKPNFANLVEKLSNLETLDLGYVSIRSTIPH-------------NLANLSSLTFLSLHSCGLQGR----IQSSLG  251 (887)
Q Consensus       189 ~~l~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------------~l~~l~~L~~L~L~~n~l~~~----~~~~l~  251 (887)
                      ....  ...+...+...++|++|++++|.+......             .....+.|+.+.+++|.+...    +...+.
T Consensus       106 ~~~~--~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         106 GPTA--QEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CTTT--HHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             cccc--ccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            3211  123456677788899999988876432111             123467889999998887643    333456


Q ss_pred             CCCCCcEEeCcCCCCCCc-----chhhccCCCCCCEEEccCCCCCCc----cchhhhCCCCCCEEEccCCcCCCCCCchh
Q 040113          252 NLSKLLHLDLSLNELLGE-----LPVSIGNLHSLKKLDLSINNLSGE----LPTSIQNLVSLEELDLSFNKLSGEFPWSI  322 (887)
Q Consensus       252 ~l~~L~~L~Ls~n~l~~~-----~p~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~L~~n~l~~~~~~~~  322 (887)
                      ..+.|++|++++|.+...     +...+..+++|++|++++|.++..    +...+..+++|++|++++|.+++......
T Consensus       184 ~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l  263 (344)
T d2ca6a1         184 SHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAV  263 (344)
T ss_dssp             HCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHH
T ss_pred             hhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccccccccccchhhhhhcCccCchhhHHH
Confidence            678899999999988642     334567788999999999988643    34556778888888888888764322110


Q ss_pred             --hcc--CCCCccEEEccCCCCC
Q 040113          323 --VIG--NFTQLQSLDFTSNKFS  341 (887)
Q Consensus       323 --~~~--~l~~L~~L~L~~n~l~  341 (887)
                        .+.  ..+.|++|++++|.++
T Consensus       264 ~~~l~~~~~~~L~~L~ls~N~i~  286 (344)
T d2ca6a1         264 VDAFSKLENIGLQTLRLQYNEIE  286 (344)
T ss_dssp             HHHHHTCSSCCCCEEECCSSCCB
T ss_pred             HHHhhhccCCCCCEEECCCCcCC
Confidence              011  1244556666665554

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.1e-13  Score=125.03  Aligned_cols=130  Identities=15%  Similarity=0.079  Sum_probs=94.0

Q ss_pred             hhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCC
Q 040113          544 LCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKL  623 (887)
Q Consensus       544 ~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L  623 (887)
                      +.++.++++|+|++|+|+. ++..+..+. +|+.|++++|+|+..  +.|..+++|++|++++|+++...+..+..+++|
T Consensus        14 ~~n~~~lr~L~L~~n~I~~-i~~~~~~l~-~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIPV-IENLGATLD-QFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EECTTSCEEEECTTSCCCS-CCCGGGGTT-CCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             ccCcCcCcEEECCCCCCCc-cCccccccc-cCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            5567788889999988874 465556666 688888888888755  347788888888888888887666667778888


Q ss_pred             cEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCC-CccccCCCCCCEEE
Q 040113          624 EFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIRE-PRIDCGFSKLRIID  677 (887)
Q Consensus       624 ~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~-~~~~~~l~~L~~L~  677 (887)
                      +.|++++|++..... ..+..+++|++|++++|+++..... ......+++|++||
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            888888888876532 4577788888888888887654210 11124567777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=7.5e-13  Score=123.22  Aligned_cols=58  Identities=24%  Similarity=0.182  Sum_probs=25.6

Q ss_pred             CCCCCCcEEeCcCCCCCCcc-hhhccCCCCCCEEEccCCCCCCcc---chhhhCCCCCCEEE
Q 040113          251 GNLSKLLHLDLSLNELLGEL-PVSIGNLHSLKKLDLSINNLSGEL---PTSIQNLVSLEELD  308 (887)
Q Consensus       251 ~~l~~L~~L~Ls~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~~---~~~l~~l~~L~~L~  308 (887)
                      ..+++|++|++++|.+.... ...+..+++|++|++++|.++...   +..++.+++|++||
T Consensus        84 ~~l~~L~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          84 QALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             HHCTTCCEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred             ccccccccceeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence            33444444444444443211 123444555555555555543211   12345556666654

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.34  E-value=2.4e-12  Score=113.59  Aligned_cols=101  Identities=25%  Similarity=0.291  Sum_probs=51.4

Q ss_pred             CeEECCCCCCCCCCCCccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCCCCCccccCCChHHHhhcCCCCC
Q 040113          130 EWLNLAFNDFKSSEIPSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNSGYGLELQKPNFANLVEKLSNLE  209 (887)
Q Consensus       130 ~~L~L~~n~~~~~~lp~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~~~~l~~~~~~~~~~~~~l~~L~  209 (887)
                      |+|+|++|+++.  ++ .++.+++|++|++++|.+. .+|..++.+++|++|++++|.+..++        .++.+++|+
T Consensus         1 R~L~Ls~n~l~~--l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~--------~~~~l~~L~   68 (124)
T d1dcea3           1 RVLHLAHKDLTV--LC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--------GVANLPRLQ   68 (124)
T ss_dssp             SEEECTTSCCSS--CC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--------GGTTCSSCC
T ss_pred             CEEEcCCCCCCC--Cc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC--------ccccccccC
Confidence            456666666653  23 3566666666666666663 45555666666666666666533221        234444444


Q ss_pred             EEEccCCCCCCCc-hhhhcCCCCCCEEEcccCCC
Q 040113          210 TLDLGYVSIRSTI-PHNLANLSSLTFLSLHSCGL  242 (887)
Q Consensus       210 ~L~L~~n~~~~~~-~~~l~~l~~L~~L~L~~n~l  242 (887)
                      +|++++|++.... ...+..+++|++|++++|.+
T Consensus        69 ~L~l~~N~i~~~~~~~~l~~~~~L~~L~l~~N~i  102 (124)
T d1dcea3          69 ELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  102 (124)
T ss_dssp             EEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             eEECCCCccCCCCCchhhcCCCCCCEEECCCCcC
Confidence            4444444444321 12334444444444444443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.28  E-value=8.1e-12  Score=110.18  Aligned_cols=63  Identities=40%  Similarity=0.491  Sum_probs=24.9

Q ss_pred             cCCCCCCcEEeCcCCCCCCcchhhccCCCCCCEEEccCCCCCCccchhhhCCCCCCEEEccCCcCC
Q 040113          250 LGNLSKLLHLDLSLNELLGELPVSIGNLHSLKKLDLSINNLSGELPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       250 l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      +..+++|++|++++|.++ .+|..++.+++|++|++++|.+++ +| .++.+++|++|++++|++.
T Consensus        16 l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N~i~   78 (124)
T d1dcea3          16 LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQ   78 (124)
T ss_dssp             GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCC
T ss_pred             cccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCCccC
Confidence            333444444444444443 233334444444444444444432 11 2334444444444444443

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=2.2e-10  Score=105.35  Aligned_cols=87  Identities=10%  Similarity=0.035  Sum_probs=42.9

Q ss_pred             CCCCeEEcCCCccCCCCCCcccccCCcceEEecCCC-cccccCCccccCCCcccEEEccCCeeeeeCCccccCCCCCcEE
Q 040113          548 DSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRAN-NFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLINCSKLEFL  626 (887)
Q Consensus       548 ~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N-~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L~~L  626 (887)
                      ...+.++.+++.+. ..|..+..++ +|++|++++| .++.+.+.+|.++++|+.|++++|+|+.+.+.+|..+++|++|
T Consensus         8 ~~~~~l~c~~~~~~-~~p~~l~~l~-~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           8 HGSSGLRCTRDGAL-DSLHHLPGAE-NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             SSSSCEECCSSCCC-TTTTTSCSCS-CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             CCCCeEEecCCCCc-cCcccccCcc-ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            33445555555554 3444444444 4555555443 2444444445555555555555555554444445555555555


Q ss_pred             eCCCCcCCCC
Q 040113          627 DIGDNQIRDI  636 (887)
Q Consensus       627 ~L~~N~l~~~  636 (887)
                      +|++|+++..
T Consensus        86 ~Ls~N~l~~l   95 (156)
T d2ifga3          86 NLSFNALESL   95 (156)
T ss_dssp             ECCSSCCSCC
T ss_pred             eccCCCCccc
Confidence            5555554444

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=1.4e-10  Score=106.63  Aligned_cols=83  Identities=20%  Similarity=0.197  Sum_probs=40.6

Q ss_pred             ceeEEEeecC-cCCccChhhhhcccCCCEEeCCCCcccccCCccccCCCCCCEEeCCCCcccccCCccccCCCCCCeeec
Q 040113          748 ILTSIILSSN-RFDGMIPTSIANLKGLQVLNLDNNNLQGHIPSCLGNLTNLESLDLSNNNFLGQIPQQLVELTFLEFFNV  826 (887)
Q Consensus       748 ~L~~L~Ls~N-~l~~~ip~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~Ls~N~l~~~~p~~l~~L~~L~~L~l  826 (887)
                      .+++|++++| .++...+..|.++++|+.|+|++|+|+...|.+|..+++|++|||++|+++...+..+..+ .|++|+|
T Consensus        32 ~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~~-~l~~L~L  110 (156)
T d2ifga3          32 NLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGL-SLQELVL  110 (156)
T ss_dssp             CCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTCSC-CCCEEEC
T ss_pred             ccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCCCCcccChhhhccc-ccccccc
Confidence            4455555433 2444444445555555555555555554445555555555555555555553333333322 3555555


Q ss_pred             ccCcc
Q 040113          827 SDNYL  831 (887)
Q Consensus       827 s~N~l  831 (887)
                      ++|++
T Consensus       111 ~~Np~  115 (156)
T d2ifga3         111 SGNPL  115 (156)
T ss_dssp             CSSCC
T ss_pred             CCCcc
Confidence            55544

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=1.9e-12  Score=125.01  Aligned_cols=41  Identities=24%  Similarity=0.242  Sum_probs=19.7

Q ss_pred             CccccCCCCCCEEECCCCCCCccCCccccCCCCCcEEEccCCC
Q 040113          145 PSEIINLSRLSYLNLSHSSFFGQIPSEILELVNLVSLDLSLNS  187 (887)
Q Consensus       145 p~~~~~l~~L~~L~Ls~n~~~~~~p~~l~~l~~L~~L~l~~n~  187 (887)
                      +..+..+++|++|+|++|.+. .++ .+..+++|++|++++|.
T Consensus        41 ~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~   81 (198)
T d1m9la_          41 DATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNL   81 (198)
T ss_dssp             HHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEE
T ss_pred             hhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhcccc
Confidence            344455555555555555543 222 24445555555555554

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.03  E-value=3.7e-12  Score=122.89  Aligned_cols=133  Identities=24%  Similarity=0.270  Sum_probs=102.5

Q ss_pred             cCChhhhCcCCCCeEEcCCCccCCCCCCcccccCCcceEEecCCCcccccCCccccCCCcccEEEccCCeeeeeCCcccc
Q 040113          539 EIPSWLCKLDSLEILVLSHNNLSGLLPRCLGSFSDKLSILDLRANNFFGTIPNTFMKESRLGMIDLSHNLFQGRIPRSLI  618 (887)
Q Consensus       539 ~~~~~~~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~  618 (887)
                      .++..+..+++|++|++++|.|+. ++ .+..++ +|++|++++|+++. ++..+..++.|+.|++++|+++..  ..+.
T Consensus        39 ~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~-~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~  112 (198)
T d1m9la_          39 KMDATLSTLKACKHLALSTNNIEK-IS-SLSGME-NLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIE  112 (198)
T ss_dssp             CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHT-TCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHH
T ss_pred             hhhhHHhcccccceeECcccCCCC-cc-cccCCc-cccChhhccccccc-cccccccccccccccccccccccc--cccc
Confidence            455678889999999999999984 44 578887 79999999999874 455555567899999999999854  3477


Q ss_pred             CCCCCcEEeCCCCcCCCCCC-ccccCCCCCCEEEccCCcccccCCCCcc--------ccCCCCCCEEE
Q 040113          619 NCSKLEFLDIGDNQIRDIFP-SWLGTLPNLTVLILQSNKFYGIIREPRI--------DCGFSKLRIID  677 (887)
Q Consensus       619 ~l~~L~~L~L~~N~l~~~~~-~~~~~l~~L~~L~L~~N~l~~~~~~~~~--------~~~l~~L~~L~  677 (887)
                      .+++|+.|++++|+++.... ..+..+++|+.|++++|++....+....        ...+++|+.||
T Consensus       113 ~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD  180 (198)
T d1m9la_         113 KLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD  180 (198)
T ss_dssp             HHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEES
T ss_pred             ccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeC
Confidence            88999999999999987632 4688899999999999988765444321        23467777766

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.8e-07  Score=86.06  Aligned_cols=14  Identities=43%  Similarity=0.567  Sum_probs=6.3

Q ss_pred             CCCCCcEEEccCCC
Q 040113          174 ELVNLVSLDLSLNS  187 (887)
Q Consensus       174 ~l~~L~~L~l~~n~  187 (887)
                      ++++|++|++++|+
T Consensus        63 ~~~~L~~L~Ls~N~   76 (162)
T d1koha1          63 NIPELLSLNLSNNR   76 (162)
T ss_dssp             HCTTCCCCCCCSSC
T ss_pred             hCCCCCEeeCCCcc
Confidence            34444444444444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.95  E-value=3.1e-07  Score=84.39  Aligned_cols=40  Identities=35%  Similarity=0.384  Sum_probs=18.6

Q ss_pred             CCCCCCEEEccCCCCCCc--cchhhhCCCCCCEEEccCCcCC
Q 040113          276 NLHSLKKLDLSINNLSGE--LPTSIQNLVSLEELDLSFNKLS  315 (887)
Q Consensus       276 ~l~~L~~L~L~~n~l~~~--~~~~l~~l~~L~~L~L~~n~l~  315 (887)
                      .+++|++|+|++|+++..  ++..+..+++|+.|++++|.++
T Consensus        63 ~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~  104 (162)
T d1koha1          63 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELK  104 (162)
T ss_dssp             HCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCC
T ss_pred             hCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccc
Confidence            445555555555555432  1233344445555555555444

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.69  E-value=3.5e-05  Score=70.62  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=52.0

Q ss_pred             cCCCCCEEEccCC-CCCCC----chhhhcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc----c
Q 040113          204 KLSNLETLDLGYV-SIRST----IPHNLANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE----L  270 (887)
Q Consensus       204 ~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~  270 (887)
                      +.++|++|+|+++ .++..    +...+...+.|++|++++|.+...    +...+...+.|++|++++|.+...    +
T Consensus        13 n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l   92 (167)
T d1pgva_          13 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL   92 (167)
T ss_dssp             TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred             CCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHH
Confidence            3455555555543 23322    222344455566666666555432    222233445566666666655432    2


Q ss_pred             hhhccCCCCCCEEEccCCCCCCc-------cchhhhCCCCCCEEEccCC
Q 040113          271 PVSIGNLHSLKKLDLSINNLSGE-------LPTSIQNLVSLEELDLSFN  312 (887)
Q Consensus       271 p~~l~~l~~L~~L~L~~n~l~~~-------~~~~l~~l~~L~~L~L~~n  312 (887)
                      ...+...++|++|++++|.+...       +...+...++|+.|+++.+
T Consensus        93 ~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          93 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            23344455566666655543321       2333444555555555443

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.44  E-value=7.1e-05  Score=68.46  Aligned_cols=20  Identities=20%  Similarity=0.305  Sum_probs=9.6

Q ss_pred             HHhhcCCCCCEEEccCCCCC
Q 040113          200 NLVEKLSNLETLDLGYVSIR  219 (887)
Q Consensus       200 ~~~~~l~~L~~L~L~~n~~~  219 (887)
                      ..+...+.|++|++++|.+.
T Consensus        66 ~~L~~n~~L~~L~L~~n~i~   85 (167)
T d1pgva_          66 ELIETSPSLRVLNVESNFLT   85 (167)
T ss_dssp             HHHHHCSSCCEEECCSSBCC
T ss_pred             hhhhhcccccceeeehhhcc
Confidence            34444445555555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.04  E-value=0.00027  Score=64.42  Aligned_cols=87  Identities=17%  Similarity=0.207  Sum_probs=37.4

Q ss_pred             hcCCCCCCEEEcccCCCCCc----cccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEcc--CCCCCC---
Q 040113          226 LANLSSLTFLSLHSCGLQGR----IQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLS--INNLSG---  292 (887)
Q Consensus       226 l~~l~~L~~L~L~~n~l~~~----~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~--~n~l~~---  292 (887)
                      +...++|++|++++|.++..    +...+...+.++.+++++|.+...    +...+...++|+.++|+  +|.+..   
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~  121 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVE  121 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHH
Confidence            33445555555555544332    112233345555555555554322    22334444555544332  333332   


Q ss_pred             -ccchhhhCCCCCCEEEccCC
Q 040113          293 -ELPTSIQNLVSLEELDLSFN  312 (887)
Q Consensus       293 -~~~~~l~~l~~L~~L~L~~n  312 (887)
                       .+...+...++|++|+++.+
T Consensus       122 ~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         122 MEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHHHHCSSCCEEECCCS
T ss_pred             HHHHHHHHhCCCcCEEeCcCC
Confidence             12233344555555555443

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.69  E-value=0.00028  Score=64.35  Aligned_cols=82  Identities=21%  Similarity=0.204  Sum_probs=42.4

Q ss_pred             CCCCCCEEEccc-CCCCC----ccccccCCCCCCcEEeCcCCCCCCc----chhhccCCCCCCEEEccCCCCCCc----c
Q 040113          228 NLSSLTFLSLHS-CGLQG----RIQSSLGNLSKLLHLDLSLNELLGE----LPVSIGNLHSLKKLDLSINNLSGE----L  294 (887)
Q Consensus       228 ~l~~L~~L~L~~-n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~----~  294 (887)
                      +.++|++|++++ +.++.    .+..++...++|++|++++|.+...    +...+...++++.+++++|.+...    +
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l   94 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL   94 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence            345555555554 22322    1233445667777777777766533    223344456666666666666533    2


Q ss_pred             chhhhCCCCCCEEEc
Q 040113          295 PTSIQNLVSLEELDL  309 (887)
Q Consensus       295 ~~~l~~l~~L~~L~L  309 (887)
                      ...+...++|+.++|
T Consensus        95 ~~~l~~~~~L~~l~L  109 (166)
T d1io0a_          95 VEALQSNTSLIELRI  109 (166)
T ss_dssp             HHGGGGCSSCCEEEC
T ss_pred             HHHHHhCccccEEee
Confidence            233445555655444