Citrus Sinensis ID: 040119

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360------
Protein Sequence
MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCCRDDAGSTTSSERSFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRLLE
Secondary Structure (PSIPRED)
cccccEEEEEccccccccccccccccccEEEcccccccccccccccccccccEEEccccccccccccccccccccccEEEccccccccccHHHHccccccEEcccccccccccccccccccEEcccccccccccccccccccccccccccccccccccccccccEEEEcccccccccccEEEEEEEEEEccccccccccccccccccEEEEcccccccccccccccccccccccccEEEEEEEcccEEEEEEEcccccEEEEEEEEEEEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEcccccccccccccHcccHHHHHccccccccccccccHcccccccEEEcccccccHHHccHHHcccHHHHEEEcccccccccccHHHHHHcccEEEccccHHHHccccccccccEEEccccHHHHccccHHccccEEEEccccccHHEEcccccccEEEEEccccccccccccEEEEEEEEEccccccccccccccccEEEEEEccccccccEccccccccccccccccEEEEEEccccEEEEEEEccccEEEEcccEEEEEEEccccccccccccHHccccccccccccccccEcccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccccHcEEcc
Coil and Loop (DISEMBL)
mknlkelsfrgckgspssaswflpfpinlmrwssdpmalslpsslsglcsltkldisycdlgegaipsgignlcSLEElhlsgnnfftlpASIYRLSKLSKIFLKDCKmlqnlprlpasihgifldgcvsletlsdgywrdcsivvpgseipewfeyqnnegssitistppktyknhklvgyamccvfrvpkyslpyynrwspdpvhmlsiyskpttsgfsgFEFRKQIGQAMSDHLFLYYqnrgaisevefsspsglelkrcgvhpiyvhqgdkfnqtsdpvwnlnefghdclgstsftRSLNDDldraeasgsccrddagsttssERSFLKRSLEEYVGAaeasgsgccnddeepqpkrfrlle
Flexible Loop (DISEMBL)
mknlkelsfrgckgspssasWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASgsccrddagsttssersfLKRSLEEYVGAaeasgsgccnddeepqpkrfrlle
Low Complexity Region (SEG)
MKNLKELSFRGCKGSPSSASWFLPFPINLMRWssdpmalslpsslsglcslTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCCRDDAGSTTSSERSFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRLLE
Disordered region (IsUnstruct)
******************ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSF*******************************************************************
Disordered Region (DISOPRED)
MKNLKELSFRGCKGSPS******P**INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQG*****************************************************SE*SFLKRSL******************************
Disordered Region (DISEMBL)
MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLD***********************LKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRLLE
Disordered Region (DISPRO)
*KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRS*N**************************F*KRSL**YVG*****************PKRF****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCCRDDAGSTTSSERSFLKRSLEEYVGAAEASGSGCCNDDEEPQPKRFRLLE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	366	2.2.26 [Sep-21-2011]
Q40392	1144	TMV resistance protein N	N/A	no	0.461	0.147	0.297	4e-15
Q7XA39	988	Putative disease resistan	N/A	no	0.232	0.086	0.366	1e-05
P34268	1257	Protein flightless-1 homo	yes	no	0.308	0.089	0.322	3e-05
P0CB16	1201	Putative disease resistan	no	no	0.265	0.080	0.326	5e-05
A8XWW4	559	Leucine-rich repeat prote	N/A	no	0.234	0.153	0.354	5e-05
Q5E9C0	277	Ras suppressor protein 1	no	no	0.204	0.270	0.355	5e-05
Q15404	277	Ras suppressor protein 1	no	no	0.204	0.270	0.355	6e-05
Q22875	559	Leucine-rich repeat prote	no	no	0.234	0.153	0.354	7e-05
Q96AG4	307	Leucine-rich repeat-conta	no	no	0.177	0.211	0.402	0.0002
O65375	744	Leucine-rich repeat exten	no	no	0.196	0.096	0.391	0.0002

>sp|Q40392|TMVRN_NICGU TMV resistance protein N OS=Nicotiana glutinosa GN=N PE=1 SV=1

 Score = 82.8 bits (203), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 64/215 (29%), Positives = 99/215 (46%), Gaps = 46/215 (21%)

Query: 16   PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCS 75
            PSS        I + R   D +    P    GL SL  L++SYC+L +G +P  IG+L S
Sbjct: 800  PSSIIRLNKLIILMFRGFKDGVHFEFPPVAEGLHSLEYLNLSYCNLIDGGLPEEIGSLSS 859

Query: 76   LEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLE--- 132
            L++L LS NNF  LP+SI +L  L  + LKDC+ L  LP LP  ++ + +D  ++L+   
Sbjct: 860  LKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQLPELPPELNELHVDCHMALKFIH 919

Query: 133  ------------TLSDGY------------WRDCS--------------IVVPGS----E 150
                         L D +            +++ S               V  G     +
Sbjct: 920  YLVTKRKKLHRVKLDDAHNDTMYNLFAYTMFQNISSMRHDISASDSLSLTVFTGQPYPEK 979

Query: 151  IPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMC 185
            IP WF +Q  + SS++++ P   Y   K +G+A+C
Sbjct: 980  IPSWFHHQGWD-SSVSVNLPENWYIPDKFLGFAVC 1013

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system including the hypersensitive response, which restricts the pathogen growth.
Nicotiana glutinosa (taxid: 35889)

>sp|Q7XA39|RGA4_SOLBU Putative disease resistance protein RGA4 OS=Solanum bulbocastanum GN=RGA4 PE=2 SV=1

 Score = 50.8 bits (120), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 33/90 (36%), Positives = 49/90 (54%), Gaps = 5/90 (5%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
           PS L    SL  L++SY  L +  +PS IG+L  L  L LS NNF +LP  + +L  L  
Sbjct: 520 PSLLKKFVSLRVLNLSYSKLEQ--LPSSIGDLLHLRYLDLSCNNFRSLPERLCKLQNLQT 577

Query: 102 IFLKDCKMLQNLPRLP---ASIHGIFLDGC 128
           + + +C  L  LP+     +S+  + +DGC
Sbjct: 578 LDVHNCYSLNCLPKQTSKLSSLRHLVVDGC 607

Disease resistance protein. Resistance proteins guard the plant against pathogens that contain an appropriate avirulence protein via a direct or indirect interaction with this avirulence protein. That triggers a defense system which restricts the pathogen growth.

Solanum bulbocastanum (taxid: 147425)

>sp|P34268|FLII_CAEEL Protein flightless-1 homolog OS=Caenorhabditis elegans GN=fli-1 PE=2 SV=2

 Score = 49.7 bits (117), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 40/124 (32%), Positives = 55/124 (44%), Gaps = 11/124 (8%)

Query: 1   MKNLKELSFRGCKGSP---SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDIS 57
           ++NL++L+  G K      +   W     +N+    S      LP  +  L  LTKL  +
Sbjct: 244 LRNLRKLNLSGNKIEKLNMTEGEWENLETLNM----SHNQLTVLPDCVVKLTRLTKLYAA 299

Query: 58  YCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLP 117
              L    IPSGIG L  L  LHLS N    +P  I R  KL K+ L   +++     LP
Sbjct: 300 NNQLTFEGIPSGIGKLIQLTVLHLSYNKLELVPEGISRCVKLQKLKLDHNRLIT----LP 355

Query: 118 ASIH 121
             IH
Sbjct: 356 EGIH 359

May play a key role in embryonic cellularization by interacting with both the cytoskeleton and other cellular components.

Caenorhabditis elegans (taxid: 6239)

>sp|P0CB16|DRL25_ARATH Putative disease resistance protein At4g19050 OS=Arabidopsis thaliana GN=At4g19050 PE=3 SV=2

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 33/101 (32%), Positives = 51/101 (50%), Gaps = 4/101 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP+ L  L +L   D+S C   E  I     NL  L +++LS  N   LP  I  LS L
Sbjct: 787 TLPN-LEKLTNLEIFDVSGCTELE-TIEGSFENLSCLHKVNLSETNLGELPNKISELSNL 844

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLD--GCVSLETLSDGY 138
            ++ L++C  L+ LP L    H +  D  GC +L+ + + +
Sbjct: 845 KELILRNCSKLKALPNLEKLTHLVIFDVSGCTNLDKIEESF 885

Potential disease resistance protein.

Arabidopsis thaliana (taxid: 3702)

>sp|A8XWW4|SHOC2_CAEBR Leucine-rich repeat protein soc-2 OS=Caenorhabditis briggsae GN=soc-2 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           ++P+ +  L  LTKL +    +    +P  IGNLCSL++L L  NN   +P  I  L  L
Sbjct: 435 TVPTEIGFLQHLTKLWVQSNKIV--TLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 492

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             ++L D   L NLP          L  C SLE +S
Sbjct: 493 KSLYLNDNSSLHNLP--------FELALCQSLEIMS 520

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Required for vulval development.

Caenorhabditis briggsae (taxid: 6238)

>sp|Q5E9C0|RSU1_BOVIN Ras suppressor protein 1 OS=Bos taurus GN=RSU1 PE=2 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP     L +L  LD++Y +L E ++P     L +L  L+LS N+F  LP  I +L+KL
Sbjct: 100 TLPRGFGSLPALEVLDLTYNNLNENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKL 159

Query: 100 SKIFLKDCKMLQNLPR 115
             + L+D  ++ +LP+
Sbjct: 160 QILSLRDNDLI-SLPK 174

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Bos taurus (taxid: 9913)

>sp|Q15404|RSU1_HUMAN Ras suppressor protein 1 OS=Homo sapiens GN=RSU1 PE=1 SV=3

 Score = 48.9 bits (115), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 45/76 (59%), Gaps = 1/76 (1%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP     L +L  LD++Y +L E ++P     L +L  L+LS N+F  LP  I +L+KL
Sbjct: 100 TLPRGFGSLPALEVLDLTYNNLSENSLPGNFFYLTTLRALYLSDNDFEILPPDIGKLTKL 159

Query: 100 SKIFLKDCKMLQNLPR 115
             + L+D  ++ +LP+
Sbjct: 160 QILSLRDNDLI-SLPK 174

Potentially plays a role in the Ras signal transduction pathway. Capable of suppressing v-Ras transformation in vitro.

Homo sapiens (taxid: 9606)

>sp|Q22875|SHOC2_CAEEL Leucine-rich repeat protein soc-2 OS=Caenorhabditis elegans GN=soc-2 PE=1 SV=3

 Score = 48.5 bits (114), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 34/96 (35%), Positives = 47/96 (48%), Gaps = 10/96 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           ++P+ +  L  LTKL +    +    +P  IGNLCSL++L L  NN   +P  I  L  L
Sbjct: 435 TVPTEIGFLQHLTKLWVQSNKIL--TLPRSIGNLCSLQDLRLGENNLTAIPEEIGHLDSL 492

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             ++L D   L NLP          L  C SLE +S
Sbjct: 493 KSLYLNDNSSLHNLP--------FELALCQSLEIMS 520

Acts as a Ras effector and participates in MAPK pathway activation. Probably acts as a regulatory subunit of protein phosphatase that specifically dephosphorylates Raf kinase and stimulate Raf activity at specialized signaling complexes upon Ras activation. Required for vulval development.

Caenorhabditis elegans (taxid: 6239)

>sp|Q96AG4|LRC59_HUMAN Leucine-rich repeat-containing protein 59 OS=Homo sapiens GN=LRRC59 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LPS   GL  L KLD+S   L +  +P+  G L +L+ L L  N   TLP S  +L  L
Sbjct: 53  TLPSDFCGLTHLVKLDLSKNKLQQ--LPADFGRLVNLQHLDLLNNKLVTLPVSFAQLKNL 110

Query: 100 SKIFLKD 106
             + LKD
Sbjct: 111 KWLDLKD 117

Homo sapiens (taxid: 9606)

>sp|O65375|LRX1_ARATH Leucine-rich repeat extensin-like protein 1 OS=Arabidopsis thaliana GN=LRX1 PE=1 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 29/74 (39%), Positives = 44/74 (59%), Gaps = 2/74 (2%)

Query: 27  INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF 86
           +N +  S+D +   LP  +  L  +T  DI+   L +G +PS +GN+ SLEELH++ N F
Sbjct: 244 LNELILSNDNLTGCLPPQIGNLKKVTVFDITSNRL-QGPLPSSVGNMKSLEELHVANNAF 302

Query: 87  F-TLPASIYRLSKL 99
              +P SI +LS L
Sbjct: 303 TGVIPPSICQLSNL 316

Modulates cell morphogenesis by regulating cell wall formation and assembly, and/or growth polarization. Together with LRX2, component of the extracellular mechanism regulating root hair morphogenesis and elongation.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
224127726	1203	tir-nbs-lrr resistance protein [Populus	0.838	0.255	0.329	1e-31
224146780	540	predicted protein [Populus trichocarpa]	0.871	0.590	0.342	7e-30
359496026	1250	PREDICTED: TMV resistance protein N-like	0.713	0.208	0.351	1e-28
359493273	1233	PREDICTED: TMV resistance protein N-like	0.816	0.242	0.327	2e-28
296090591	771	unnamed protein product [Vitis vinifera]	0.715	0.339	0.342	4e-28
255561514	994	leucine-rich repeat-containing protein,	0.721	0.265	0.317	2e-27
147802475	1244	hypothetical protein VITISV_027841 [Viti	0.502	0.147	0.399	2e-27
225465768	1179	PREDICTED: TMV resistance protein N-like	0.502	0.156	0.390	1e-26
359496034	1132	PREDICTED: TMV resistance protein N-like	0.688	0.222	0.335	2e-26
147822714	1254	hypothetical protein VITISV_015601 [Viti	0.502	0.146	0.386	2e-26

>gi|224127726|ref|XP_002329162.1| tir-nbs-lrr resistance protein [Populus trichocarpa] gi|222870943|gb|EEF08074.1| tir-nbs-lrr resistance protein [Populus trichocarpa]

 Score =  143 bits (360), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 187/385 (48%), Gaps = 78/385 (20%)

Query: 1    MKNLKELSFRGCKGSPSSAS--W-FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDIS 57
            +KNLK LSF GC  S  S +  W  L FP  LM          +  SLSGL SLT+L +S
Sbjct: 830  LKNLKILSFHGCAESSRSTTNIWQRLMFP--LMPGKRANSTSLVLPSLSGLSSLTRLGLS 887

Query: 58   YCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLP 117
             C+LGEGA+P+ IG L SL +L+LS N F +LP SI +LS L  + ++DCKMLQ+LP LP
Sbjct: 888  NCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLQFLRMEDCKMLQSLPELP 947

Query: 118  ASIHGIFLDGCVSLETLSDGY---------------WR----DC---------------- 142
            +++    ++GC SLE +                   WR    DC                
Sbjct: 948  SNLEEFRVNGCTSLEKMQFSRKLCQLNYLRYLFINCWRLSESDCWNNMFPTLLRKCFQGP 1007

Query: 143  -------SIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSL 195
                   S+++PGSEIP WF +Q +EGSS+++ TPP +++N + +GYA+C     P +  
Sbjct: 1008 PNLIESFSVIIPGSEIPTWFSHQ-SEGSSVSVQTPPHSHENDEWLGYAVCASLGYPDF-- 1064

Query: 196  PYYNRWSPDPVHMLSIYSKPTTSGFSG-------FEFRKQIGQAMSDHL-FLYYQNRGAI 247
                   P+      ++  P    F+G          R +  + +SDHL FLY+ +R   
Sbjct: 1065 ------PPN------VFRSPMQCFFNGDGNESESIYVRLKPCEILSDHLWFLYFPSRFKR 1112

Query: 248  --SEVEF---SSPSGLELKRCGVHPIYVHQGDKFNQTSDPVWNLNEFGHD-CLGST--SF 299
                V F    + S  ++ +CGV  +Y    ++ N+ ++   N    G D C   +  + 
Sbjct: 1113 FDRHVRFRFEDNCSQTKVIKCGVRLVYQQDVEELNRMTNLYENSTFEGVDECFQESGGAL 1172

Query: 300  TRSLNDDLDRAEASGSCCRDDAGST 324
             + L    D  EASGS   D+   T
Sbjct: 1173 VKRLGHTNDVGEASGSVSSDEQPPT 1197

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224146780|ref|XP_002336335.1| predicted protein [Populus trichocarpa] gi|222834747|gb|EEE73210.1| predicted protein [Populus trichocarpa]

 Score =  137 bits (345), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 131/383 (34%), Positives = 188/383 (49%), Gaps = 64/383 (16%)

Query: 1   MKNLKELSFRGCKGSPSSAS--W-FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDIS 57
           +KNLK LSF GC  S  S +  W  L FP  LM          +  SLSGL SLT+L +S
Sbjct: 157 LKNLKILSFHGCAESSRSTTNIWQRLMFP--LMPGKRANSTSLVLPSLSGLSSLTRLGLS 214

Query: 58  YCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLP 117
            C+LGEGA+P+ IG L SL +L+LS N F +LP SI +LS L  ++++DCKMLQ+LP+LP
Sbjct: 215 NCNLGEGAVPNDIGYLSSLRQLNLSRNKFVSLPTSIDQLSGLKFLYMEDCKMLQSLPQLP 274

Query: 118 ASIHGIFLDGCVSLETL---SDGY------------WR----DC---------------- 142
            ++  + ++GC SLE +   S+ Y            WR    DC                
Sbjct: 275 PNLELLRVNGCTSLEKMQFSSNPYKFNCLSFCFINCWRLSESDCWNNMFHTLLRKCFQGP 334

Query: 143 -------SIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRV----- 190
                  S+ +PGSEIP WF +Q +EGSS+++ TPP + +N + +GYA+C          
Sbjct: 335 PNLIEVFSVFIPGSEIPTWFSHQ-SEGSSVSVQTPPHSLENDECLGYAVCASLEYDGCAS 393

Query: 191 PKYSLPYYNRWSPDPVHMLSIYSKPTTSGF-SGFEFRKQIGQAMSDHL-FLYYQNRGAIS 248
            +    Y+    P       +      S F  G E + +     SDHL +L++ +R  I 
Sbjct: 394 SELLTDYWVSGVPISCFFNGVNYGSVMSYFHRGIEMQWKRDNIPSDHLWYLFFPSRFKIF 453

Query: 249 EVEFS-----SPSGLELKRCGVHPIYVHQGDKFNQTSDPVWN-LNEFGHDCL-GSTSFTR 301
           +   S         +++ +CGV P+Y HQ D  N T + V     E G   + G  +  +
Sbjct: 454 DRHVSLRFETYRPQIKVIKCGVRPVY-HQ-DVENSTFEGVDECFQESGGSTMRGGGALVK 511

Query: 302 SLNDDLDRAEASGSCCRDDAGST 324
            L    D  EASGS   D+   T
Sbjct: 512 RLCYTNDVGEASGSVSSDEQPPT 534

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496026|ref|XP_002277166.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  133 bits (334), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 112/319 (35%), Positives = 151/319 (47%), Gaps = 58/319 (18%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINL-MRWSSDPMALSLPSSLSGLCSLTKLDISYC 59
            ++NLK LSF+GC GSPSS  W   F   L +R  SD     LPS LSGLCSL +L++S C
Sbjct: 837  LRNLKVLSFQGCNGSPSS-RWNSRFWSMLCLRRISDSTGFRLPS-LSGLCSLKQLNLSDC 894

Query: 60   DLGEGAIPSGIGN-LCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPA 118
            ++ EGA+P+ +G  L SLE L+L GN+F TLP  I +L  L  ++L  CK LQ LP LP 
Sbjct: 895  NIKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRLQELPMLPP 954

Query: 119  SIHGIFLDGCVSLETLS--------------------DGYWRDCSIV------VPGSEIP 152
            +I+ I    C SLETLS                    + Y  + S +      +PG+ IP
Sbjct: 955  NINRINAQNCTSLETLSGLSAPCWLAFTNSFRQNWGQETYLAEVSRIPKFNTYLPGNGIP 1014

Query: 153  EWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPK-------YSLPYYNRWSPDP 205
            EWF  Q   G SI +  P   Y N   +G+AMC VF + +         L        DP
Sbjct: 1015 EWFRNQ-CMGDSIMVQLPSHWY-NDNFLGFAMCIVFALKEPNQCSRGAMLCELESSDLDP 1072

Query: 206  VHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGL------- 258
             ++          G S  +     G   SDHL+L Y     I + +   P+ L       
Sbjct: 1073 SNLGCFLDHIVWEGHSDGD-----GFVESDHLWLGYHPNFPIKKDDMDWPNKLSHIKASF 1127

Query: 259  -------ELKRCGVHPIYV 270
                   E+K CG   +Y+
Sbjct: 1128 VIAGIPHEVKWCGFRLVYM 1146

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359493273|ref|XP_002272034.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  132 bits (332), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 175/394 (44%), Gaps = 95/394 (24%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINLM-RWSSDPMALSLPSSLSGLCSLTKLDISYC 59
            ++NL+ LSF GCKG  S+ SW   F   L+ R SSD + L LPS LSGLCSL +LDIS C
Sbjct: 820  LRNLEILSFGGCKGLASN-SWSSLFSFWLLPRKSSDTIGLQLPS-LSGLCSLRELDISDC 877

Query: 60   DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
            +L EGA+P  I NL SLE L+LS NNFF+LPA I +LSKL  + L  CK L  +P LP+S
Sbjct: 878  NLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSS 937

Query: 120  IHGIFLDGCVSLETLSDG----------YW------------------RDCSIVVP---- 147
            I  +    C SL T+              W                   D +I+ P    
Sbjct: 938  IIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQI 997

Query: 148  ----------------------GSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMC 185
                                  GSEIP+W   Q N GS +TI  PP  ++++  +G+A+C
Sbjct: 998  VTNMLQKLQNFLPDFGFSIFLPGSEIPDWISNQ-NLGSEVTIELPPHWFESN-FLGFAVC 1055

Query: 186  CVFRVPKY-----SLPYYNRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLY 240
            CVF          S     +   D  H   I     +    G        +  S H++L 
Sbjct: 1056 CVFAFEDIAPNGCSSQLLCQLQSDESHFRGIGHILHSIDCEG----NSEDRLKSHHMWLA 1111

Query: 241  YQNRG---------------AISEVEFSS--PSGLELKRCGVHPIYVHQGDKFNQTSDPV 283
            Y+ RG               A +   F S  PS + +++CG+H IY    ++ N T    
Sbjct: 1112 YKPRGRLRISYGDCPNRWRHAKASFGFISCCPSNM-VRKCGIHLIYAQDHEERNSTM--- 1167

Query: 284  WNLNEFGHDCLGSTSFTRSLNDDLDRAEASGSCC 317
                   H   G+ S  +S +  +  A  SG CC
Sbjct: 1168 -----IHHSSSGNFSDLKSADSSVG-ASGSGLCC 1195

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296090591|emb|CBI40960.3| unnamed protein product [Vitis vinifera]

 Score =  131 bits (330), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 109/318 (34%), Positives = 150/318 (47%), Gaps = 56/318 (17%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           ++NLK LSF+GC GSPSS      + +  +R  SD     LPS LSGLCSL +L++S C+
Sbjct: 343 LRNLKVLSFQGCNGSPSSRWNSRFWSMLCLRRISDSTGFRLPS-LSGLCSLKQLNLSDCN 401

Query: 61  LGEGAIPSGIGN-LCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
           + EGA+P+ +G  L SLE L+L GN+F TLP  I +L  L  ++L  CK LQ LP LP +
Sbjct: 402 IKEGALPNDLGGYLSSLEYLNLKGNDFVTLPTGISKLCNLKALYLGCCKRLQELPMLPPN 461

Query: 120 IHGIFLDGCVSLETLS--------------------DGYWRDCSIV------VPGSEIPE 153
           I+ I    C SLETLS                    + Y  + S +      +PG+ IPE
Sbjct: 462 INRINAQNCTSLETLSGLSAPCWLAFTNSFRQNWGQETYLAEVSRIPKFNTYLPGNGIPE 521

Query: 154 WFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPK-------YSLPYYNRWSPDPV 206
           WF  Q   G SI +  P   Y N   +G+AMC VF + +         L        DP 
Sbjct: 522 WFRNQ-CMGDSIMVQLPSHWY-NDNFLGFAMCIVFALKEPNQCSRGAMLCELESSDLDPS 579

Query: 207 HMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRGAISEVEFSSPSGL-------- 258
           ++          G S  +     G   SDHL+L Y     I + +   P+ L        
Sbjct: 580 NLGCFLDHIVWEGHSDGD-----GFVESDHLWLGYHPNFPIKKDDMDWPNKLSHIKASFV 634

Query: 259 ------ELKRCGVHPIYV 270
                 E+K CG   +Y+
Sbjct: 635 IAGIPHEVKWCGFRLVYM 652

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255561514|ref|XP_002521767.1| leucine-rich repeat-containing protein, putative [Ricinus communis] gi|223538980|gb|EEF40577.1| leucine-rich repeat-containing protein, putative [Ricinus communis]

 Score =  129 bits (325), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 110/347 (31%), Positives = 161/347 (46%), Gaps = 83/347 (23%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPI-NLMRWSSDPMALSLPSSLSGLCSLTKLDISYC 59
           +K LK LSF G        +W  P+ I ++   + D + LSLPS L+GL SLT+LD+S C
Sbjct: 595 LKYLKVLSFHGI----GPIAWQWPYKILSIFGITHDAVGLSLPS-LNGLLSLTELDLSDC 649

Query: 60  DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
           +L +  IP+    L SLE L++  NNF  +PASI +L +L  ++L DCK L+ L +LP +
Sbjct: 650 NLSDKMIPADFYTLSSLEVLNIGRNNFVNIPASISQLPRLRFLYLDDCKNLKALRKLPTT 709

Query: 120 IHGIFLDGCVSLETLSDG------------YWRDCS------------------------ 143
           IH I  + C SLETLS              Y+ +CS                        
Sbjct: 710 IHEISANNCTSLETLSSPEVIADKWNWPIFYFTNCSKLAVNQGNDSTAFKFLRSHLQSLP 769

Query: 144 ---------------IVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVF 188
                          ++VPG+E+P WF +Q N GSS+ I   PK Y N K  G A+C  F
Sbjct: 770 MSQLQDASYTGCRFDVIVPGTEVPAWFSHQ-NVGSSLIIQLTPKWY-NEKFKGLAICLSF 827

Query: 189 RVPKYSLPYYNRWSPDPVHMLSIYSK------PTTSGFSGFEFRKQIGQAMSDHLFLYYQ 242
              +      +  S D    ++IY K       +TS F    +R  +    S+HL++ + 
Sbjct: 828 ATHENPHLLPDGLSTD----IAIYCKLEAVEYTSTSSFKFLIYR--VPSLKSNHLWMGFH 881

Query: 243 NRGAIS-----------EVEF-SSPSGLELKRCGVHPIYVHQGDKFN 277
           +R               +V F SS   +E+K CG+  +Y    D +N
Sbjct: 882 SRIGFGKSNWLNNCGYLKVSFESSVPCMEVKYCGIRFVYDQDEDDYN 928

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147802475|emb|CAN61853.1| hypothetical protein VITISV_027841 [Vitis vinifera]

 Score =  129 bits (324), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 97/243 (39%), Positives = 125/243 (51%), Gaps = 59/243 (24%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINLM-RWSSDPMALSLPSSLSGLCSLTKLDISYC 59
            ++NL+ LSF GCKG  S+ SW   F   L+ R SSD + L LPS LSGLCSL +LDIS C
Sbjct: 788  LRNLEILSFGGCKGLASN-SWSSLFSFWLLPRKSSDTIGLQLPS-LSGLCSLRELDISDC 845

Query: 60   DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
            +L EGA+P  I NL SLE L+LS NNFF+LPA I +LSKL  + L  CK L  +P LP+S
Sbjct: 846  NLMEGAVPFDICNLSSLETLNLSRNNFFSLPAGISKLSKLRFLSLNHCKSLLQIPELPSS 905

Query: 120  IHGIFLDGCVSLETLSDG----------YW------------------RDCSIVVP---- 147
            I  +    C SL T+              W                   D +I+ P    
Sbjct: 906  IIEVNAQYCSSLNTILTPSSVCNNQPVCRWLVFTLPNCFNLDAENPCSNDMAIISPRMQI 965

Query: 148  ----------------------GSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMC 185
                                  GSEIP+W   Q N GS +TI  PP  ++++  +G+A+C
Sbjct: 966  VTNMLQKLQNFLPDFGFSIFLPGSEIPDWISNQ-NLGSEVTIELPPHWFESN-FLGFAVC 1023

Query: 186  CVF 188
            CVF
Sbjct: 1024 CVF 1026

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225465768|ref|XP_002266923.1| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  127 bits (318), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/233 (39%), Positives = 121/233 (51%), Gaps = 49/233 (21%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINLM-RWSSDPMALSLPSSLSGLCSLTKLDISYC 59
            ++NLKELSFRGCKGS +S SW       L+ R +SD   L LP  LSGL SL  LD+S C
Sbjct: 813  LRNLKELSFRGCKGS-TSNSWISSLLFRLLHRENSDGTGLQLPY-LSGLYSLKYLDLSGC 870

Query: 60   DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
            +L + +I   +G+L  LEEL+LS NN  T+PA + RLS L  + +  CK LQ + +LP S
Sbjct: 871  NLTDRSINDNLGHLSFLEELNLSRNNLVTVPAEVNRLSHLRVLSVNQCKSLQEISKLPPS 930

Query: 120  IHGIFLDGCVSLETL------SDGYWRDCS------------------------------ 143
            I  +    C+SLE+L      S  Y    S                              
Sbjct: 931  IKLLDAGDCISLESLSVLSPQSPQYLSSSSCLRPVTFKLPNCFALAQDNGATILEKLRQN 990

Query: 144  --------IVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVF 188
                    IV+PGS IPEWF++ +  GSS+TI  PP  + N   +G+A+C VF
Sbjct: 991  FLPEIEYSIVLPGSTIPEWFQHPSI-GSSVTIELPP-NWHNKDFLGFALCSVF 1041

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359496034|ref|XP_002277500.2| PREDICTED: TMV resistance protein N-like [Vitis vinifera]

 Score =  126 bits (317), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 113/337 (33%), Positives = 161/337 (47%), Gaps = 85/337 (25%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
            ++ L+ LSF GCKG PS ASW    P    R SS+     L S LSGL SL +L++  C+
Sbjct: 721  LRILQVLSFNGCKGPPS-ASWLTLLP----RKSSNSGKF-LLSPLSGLGSLKELNLRDCN 774

Query: 61   LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
            + EGA  S +  L SLE L LSGNNF +LP+S+ +LS+L  + L++C+ LQ L  LP+SI
Sbjct: 775  ISEGADLSHLAILSSLEYLDLSGNNFISLPSSMSQLSQLVSLKLQNCRRLQALSELPSSI 834

Query: 121  HGIFLDGCVSLETLSD------------------------------------------GY 138
              I    C+SLET+S+                                           Y
Sbjct: 835  KEIDAHNCMSLETISNRSLFPSLRHVSFGECLKIKTYQNNIGSMLQALATFLQTHKRSRY 894

Query: 139  WRD--------CSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRV 190
             RD         S VVPGSEIP+WF YQ++ G+ + I  PP  + N   +G+A+  VF  
Sbjct: 895  ARDNPESVTIEFSTVVPGSEIPDWFSYQSS-GNVVNIELPPNWF-NSNFLGFALSAVFGF 952

Query: 191  PKYSLPYYNRWSPDPVH----MLSIYS-KPTTSGFSGFEFRKQIGQAM--SDHLFLYYQN 243
                LP YN     P H    +  I+S + + + +    F    G A+  SDHL+L Y  
Sbjct: 953  D--PLPDYN-----PNHKVFCLFCIFSFQNSAASYRDNVFHYNSGPALIESDHLWLGYA- 1004

Query: 244  RGAISEVEFSSPSGLE-----------LKRCGVHPIY 269
               +S  ++   +  +           +KRCG+H +Y
Sbjct: 1005 -PVVSSFKWHEVNHFKAAFQIYGRHFVVKRCGIHLVY 1040

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147822714|emb|CAN68293.1| hypothetical protein VITISV_015601 [Vitis vinifera]

 Score =  126 bits (316), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/233 (38%), Positives = 119/233 (51%), Gaps = 49/233 (21%)

Query: 1    MKNLKELSFRGCKGSPSSASWFLPFPINLMRW-SSDPMALSLPSSLSGLCSLTKLDISYC 59
            ++NLKELSFRGCKGS +S SW       L+R  +SD   L LP  LSGL SL  LD+S C
Sbjct: 891  LRNLKELSFRGCKGS-TSNSWIXSLVFRLLRRENSDGTGLQLPY-LSGLYSLKYLDLSGC 948

Query: 60   DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
            +L +G+I   +G L  LEEL+LS NN   +P  ++RLS L  + +  CK LQ + +LP S
Sbjct: 949  NLTDGSINDNLGRLRFLEELNLSRNNLVMVPEGVHRLSNLRVLSVNQCKSLQEISKLPPS 1008

Query: 120  IHGIFLDGCVSLETLS-------------------DGYWRDC------------------ 142
            I  +    C+SLE LS                        +C                  
Sbjct: 1009 IKSLDAGDCISLEFLSIPSPQSPQYLSSSSCLHPLSFKLSNCFALAQDNVATILEKLHQN 1068

Query: 143  -------SIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVF 188
                   SIV+PGS IPEWF++ +  GSS TI  PP  + N   +G+A+C VF
Sbjct: 1069 FLPEIEYSIVLPGSTIPEWFQHPSI-GSSETIELPP-NWHNKDFLGFALCSVF 1119

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	366
UNIPROTKB|Q40392	1144	N "TMV resistance protein N" [	0.215	0.069	0.443	1.3e-12
TAIR|locus:2175991	1294	AT5G17680 [Arabidopsis thalian	0.237	0.067	0.420	2.8e-11
TAIR|locus:2118106	1219	AT4G12010 [Arabidopsis thalian	0.226	0.068	0.447	7e-10
TAIR|locus:2122925	417	AT4G19470 [Arabidopsis thalian	0.202	0.177	0.415	2.1e-09
TAIR|locus:2122965	1210	AT4G19510 [Arabidopsis thalian	0.218	0.066	0.390	2.3e-08
TAIR|locus:2167457	1191	AT5G36930 [Arabidopsis thalian	0.349	0.107	0.333	2.4e-08
TAIR|locus:2081810	1226	AT3G51570 [Arabidopsis thalian	0.174	0.052	0.4	9.4e-08
TAIR|locus:2205824	1384	AT1G27170 [Arabidopsis thalian	0.199	0.052	0.410	6.3e-07
TAIR|locus:2153363	1261	AT5G45200 [Arabidopsis thalian	0.210	0.061	0.443	6.5e-07
TAIR|locus:2827629	1355	AT2G17050 [Arabidopsis thalian	0.188	0.050	0.463	1.7e-06

UNIPROTKB|Q40392 N "TMV resistance protein N" [Nicotiana glutinosa (taxid:35889)]

 Score = 172 (65.6 bits), Expect = 1.3e-12, Sum P(2) = 1.3e-12
 Identities = 35/79 (44%), Positives = 54/79 (68%)

Query:    54 LDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNL 113
             L++SYC+L +G +P  IG+L SL++L LS NNF  LP+SI +L  L  + LKDC+ L  L
Sbjct:   838 LNLSYCNLIDGGLPEEIGSLSSLKKLDLSRNNFEHLPSSIAQLGALQSLDLKDCQRLTQL 897

Query:   114 PRLPASIHGIFLDGCVSLE 132
             P LP  ++ + +D  ++L+
Sbjct:   898 PELPPELNELHVDCHMALK 916

GO:0005515 "protein binding" evidence=IPI

TAIR|locus:2175991 AT5G17680 [Arabidopsis thaliana (taxid:3702)]

 Score = 167 (63.8 bits), Expect = 2.8e-11, Sum P(2) = 2.8e-11
 Identities = 37/88 (42%), Positives = 57/88 (64%)

Query:    56 ISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP- 114
             +S  ++    IP+ IGNL +L EL LSGNNF  +PASI RL++L+++ L +C+ LQ LP 
Sbjct:   960 LSLSNMNMTEIPNSIGNLWNLLELDLSGNNFEFIPASIKRLTRLNRLNLNNCQRLQALPD 1019

Query:   115 RLPASIHGIFLDGCVSLETLSDGYWRDC 142
              LP  +  I++  C SL ++S  + + C
Sbjct:  1020 ELPRGLLYIYIHSCTSLVSISGCFNQYC 1047

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2118106 AT4G12010 [Arabidopsis thaliana (taxid:3702)]

 Score = 156 (60.0 bits), Expect = 7.0e-10, Sum P(2) = 7.0e-10
 Identities = 38/85 (44%), Positives = 51/85 (60%)

Query:    52 TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ 111
             T L +S C L +  +P  IG L SL+ L LSGNN   LP S  +L+ L    LK CKML+
Sbjct:   858 TDLYLSRCSLYK--LPDNIGGLSSLQSLCLSGNNIENLPESFNQLNNLKWFDLKFCKMLK 915

Query:   112 NLPRLPASIHGIFLDGCVSLETLSD 136
             +LP LP ++  +    C SLETL++
Sbjct:   916 SLPVLPQNLQYLDAHECESLETLAN 940

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

TAIR|locus:2122925 AT4G19470 [Arabidopsis thaliana (taxid:3702)]

 Score = 134 (52.2 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
 Identities = 32/77 (41%), Positives = 48/77 (62%)

Query:    59 CDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPA 118
             C+L +   P     L SL+ L LS N+   LP SI +L  L  ++LK+CK L +LP LP+
Sbjct:    39 CNLYK--FPDNFSCLSSLQSLCLSRNSIENLPGSIKKLHHLKSLYLKNCKNLISLPVLPS 96

Query:   119 SIHGIFLDGCVSLETLS 135
             + + + + GC+SLET+S
Sbjct:    97 NQY-LDVHGCISLETVS 112

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2122965 AT4G19510 [Arabidopsis thaliana (taxid:3702)]

 Score = 123 (48.4 bits), Expect = 2.3e-08, Sum P(2) = 2.3e-08
 Identities = 32/82 (39%), Positives = 48/82 (58%)

Query:    54 LDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNL 113
             L ++ C++ +  +P    +L SL  L LS NN  TLP SI +L  L  + LK C  L++L
Sbjct:   849 LYLTNCNIDK--LPDKFSSLRSLRCLCLSRNNIETLPESIEKLYSLLLLDLKHCCRLKSL 906

Query:   114 PRLPASIHGIFLDGCVSLETLS 135
             P LP+++  +   GC SLE +S
Sbjct:   907 PLLPSNLQYLDAHGCGSLENVS 928

GO:0005622 "intracellular" evidence=IEA

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2167457 AT5G36930 [Arabidopsis thaliana (taxid:3702)]

 Score = 161 (61.7 bits), Expect = 2.4e-08, P = 2.4e-08
 Identities = 46/138 (33%), Positives = 61/138 (44%)

Query:     1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWXXXXXXXXXXXXXXXXXXXTKLDISYCD 60
             +K LK LS  GCKG  S          NL                        L + YC+
Sbjct:   741 LKKLKRLSLNGCKGLLSDDI------DNLYSEKSHSVSLLRPVSLSGLTYMRILSLGYCN 794

Query:    61 LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
             L +  IP  IG+L  L +L L GN+F  LP     L  L ++ L DC  LQ++  LP S+
Sbjct:   795 LSDELIPEDIGSLSFLRDLDLRGNSFCNLPTDFATLPNLGELLLSDCSKLQSILSLPRSL 854

Query:   121 HGIFLD-G-CVSLETLSD 136
               +FLD G C+ L+   D
Sbjct:   855 --LFLDVGKCIMLKRTPD 870

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2081810 AT3G51570 [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 9.4e-08, Sum P(2) = 9.4e-08
 Identities = 26/65 (40%), Positives = 43/65 (66%)

Query:    73 LCSLEELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSL 131
             + SL+ L LS N+  + LP +I +LS+L  + LK CK L ++P+LP ++  +   GC SL
Sbjct:   809 ISSLQCLCLSKNDHISSLPDNISQLSQLKWLDLKYCKSLTSIPKLPPNLQHLDAHGCCSL 868

Query:   132 ETLSD 136
             +T+S+
Sbjct:   869 KTVSN 873

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0016020 "membrane" evidence=IDA

TAIR|locus:2205824 AT1G27170 [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.3e-07, Sum P(2) = 6.3e-07
 Identities = 30/73 (41%), Positives = 46/73 (63%)

Query:    64 GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGI 123
             G IP  +  L  L +L+L  N F +LP+S+ +LS L ++ L+DC+ L+ LP LP  +  +
Sbjct:  1076 GKIPDDLEKLSCLMKLNLGNNYFHSLPSSLVKLSNLQELSLRDCRELKRLPPLPCKLEQL 1135

Query:   124 FLDGCVSLETLSD 136
              L  C SLE++SD
Sbjct:  1136 NLANCFSLESVSD 1148

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2153363 AT5G45200 [Arabidopsis thaliana (taxid:3702)]

 Score = 138 (53.6 bits), Expect = 6.5e-07, Sum P(2) = 6.5e-07
 Identities = 35/79 (44%), Positives = 45/79 (56%)

Query:    57 SYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL 116
             S C L E   P GI  L S+  L LS N F  LP SI  L  L+ + LK CK L ++P L
Sbjct:   856 SNCHLCEW--PRGIYGLSSVRRLSLSSNEFRILPRSIGYLYHLNWLDLKHCKNLVSVPML 913

Query:   117 PASIHGIFLDGCVSLETLS 135
             P ++  +   GC+SLET+S
Sbjct:   914 PPNLQWLDAHGCISLETIS 932

GO:0005622 "intracellular" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

TAIR|locus:2827629 AT2G17050 [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 1.7e-06, P = 1.7e-06
 Identities = 32/69 (46%), Positives = 41/69 (59%)

Query:    66 IPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFL 125
             IP  I NL SL+ L LSGNNF  LP SI +   L  + L  CK L++LP LP S+  +  
Sbjct:   820 IPQEICNLLSLKTLDLSGNNFGKLPESIKQFRNLESLILCHCKNLESLPELPQSLEFLNA 879

Query:   126 DGCVSLETL 134
              GCV L+ +
Sbjct:   880 HGCVCLKNI 888

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006952 "defense response" evidence=IEA;ISS

GO:0007165 "signal transduction" evidence=IEA

GO:0043531 "ADP binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.01250006 tir-nbs-lrr resistance protein (1203 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	366
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	5e-07
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	2e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	5e-04
PLN03210	1153	PLN03210, PLN03210, Resistant to P	0.002

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 50.7 bits (121), Expect = 5e-07
 Identities = 29/75 (38%), Positives = 42/75 (56%), Gaps = 2/75 (2%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           SLPS L  L +L  LD+S+ DL +  +P  + NL +L  L LSGN    LP  I  LS L
Sbjct: 154 SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLDLSGNKISDLPPEIELLSAL 211

Query: 100 SKIFLKDCKMLQNLP 114
            ++ L +  +++ L 
Sbjct: 212 EELDLSNNSIIELLS 226

Length = 394

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score = 44.8 bits (106), Expect = 6e-05
 Identities = 30/77 (38%), Positives = 42/77 (54%), Gaps = 2/77 (2%)

Query: 41  LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKL 99
           +P  + GL SL  LD+ Y +L  G IPS +GNL +L+ L L  N     +P SI+ L KL
Sbjct: 228 IPYEIGGLTSLNHLDLVYNNL-TGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKL 286

Query: 100 SKIFLKDCKMLQNLPRL 116
             + L D  +   +P L
Sbjct: 287 ISLDLSDNSLSGEIPEL 303

Length = 968

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 39.1 bits (92), Expect = 2e-04
 Identities = 19/61 (31%), Positives = 27/61 (44%), Gaps = 4/61 (6%)

Query: 50  SLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDC 107
           +L  LD+S   L    IP G    L +L+ L LSGNN  ++   +   L  L  + L   
Sbjct: 1   NLKSLDLSNNRLTV--IPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGN 58

Query: 108 K 108
            
Sbjct: 59  N 59

Length = 60

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 42.3 bits (99), Expect = 3e-04
 Identities = 27/87 (31%), Positives = 41/87 (47%), Gaps = 3/87 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP  +  L +L +LD+S   + E  + S + NL +L  L LS N    LP SI  LS L
Sbjct: 200 DLPPEIELLSALEELDLSNNSIIE--LLSSLSNLKNLSGLELSNNKLEDLPESIGNLSNL 257

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLD 126
             + L     + ++  L +  +   LD
Sbjct: 258 ETLDL-SNNQISSISSLGSLTNLRELD 283

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 41.7 bits (98), Expect = 5e-04
 Identities = 27/88 (30%), Positives = 48/88 (54%), Gaps = 5/88 (5%)

Query: 41  LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKL 99
           +P+ +S L  L  +++S   +  G IP  +G++ SLE L LS N+F  ++P S+ +L+ L
Sbjct: 434 IPNDISKLRHLQSINLSGNSI-RGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSL 492

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDG 127
             + L    +     R+PA++ G  L  
Sbjct: 493 RILNLNGNSLSG---RVPAALGGRLLHR 517

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 39.9 bits (93), Expect = 0.002
 Identities = 31/118 (26%), Positives = 47/118 (39%), Gaps = 14/118 (11%)

Query: 75  SLEELHLSGN-NFFTLPASIYRLSKLSKIFLKDCKMLQNLP---RLPASIHGIFLDGCVS 130
           SL  L LS   +   LP+SI  L KL  + +++C  L+ LP    L  S+  + L GC  
Sbjct: 779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLE-SLESLDLSGCSR 837

Query: 131 LETLSDGYWRDCSIVVPGS---EIPEWFE------YQNNEGSSITISTPPKTYKNHKL 179
           L T  D       + +  +   E+P W E      + +  G +          K   L
Sbjct: 838 LRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHL 895

syringae 6; Provisional. Length = 1153

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	366
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.48
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.34
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.19
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.15
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.15
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.14
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.04
PLN03150	623	hypothetical protein; Provisional	99.0
PLN03150	623	hypothetical protein; Provisional	98.98
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.97
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.95
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.94
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.94
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	98.92
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	98.91
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.72
KOG0472	565	consensus Leucine-rich repeat protein [Function un	98.7
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.67
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.55
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	98.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.5
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.46
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.42
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	98.37
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.35
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.34
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	98.34
PRK15386	426	type III secretion protein GogB; Provisional	98.34
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	98.33
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	98.2
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.14
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	98.06
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.99
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.95
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.85
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.83
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.76
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.76
PRK15386	426	type III secretion protein GogB; Provisional	97.73
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.66
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.65
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	97.63
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	97.51
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.42
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.4
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	97.4
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.19
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.18
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	97.12
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	96.78
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.69
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.45
KOG2982	418	consensus Uncharacterized conserved protein [Funct	96.36
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	96.25
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	96.01
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.35
KOG2982	418	consensus Uncharacterized conserved protein [Funct	95.02
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	95.01
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	94.81
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.6
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.54
KOG2123	388	consensus Uncharacterized conserved protein [Funct	94.31
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	94.15
KOG0473	326	consensus Leucine-rich repeat protein [Function un	93.71
smart00370	26	LRR Leucine-rich repeats, outliers.	92.88
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	92.88
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	90.72
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	90.36
KOG1947	482	consensus Leucine rich repeat proteins, some prote	89.91
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	86.77
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.43
KOG1947	482	consensus Leucine rich repeat proteins, some prote	84.23
smart00370	26	LRR Leucine-rich repeats, outliers.	83.2
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	83.2
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	82.51

>PLN03210 Resistant to P

Probab=99.92  E-value=2.4e-23  Score=231.31  Aligned_cols=261  Identities=19%  Similarity=0.211  Sum_probs=170.5

Q ss_pred             CccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      +|+.|+|++|......|. ...+++|+.|++++|...+.+|..+ ++++|+.|+|++|... ..+|..   ..+|+.|+|
T Consensus       779 sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L-~~~p~~---~~nL~~L~L  853 (1153)
T PLN03210        779 SLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRL-RTFPDI---STNISDLNL  853 (1153)
T ss_pred             cchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCcc-cccccc---ccccCEeEC
Confidence            556666666653332222 2334556666666654444566544 5666666666666554 344432   357888899


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCc---ccceecccCCcCccEeeCC---------------------
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPA---SIHGIFLDGCVSLETLSDG---------------------  137 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~---~L~~L~~~~c~sL~~l~~~---------------------  137 (366)
                      ++|.|+.+|.++..+++|+.|+|++|+.++.+|..+.   .|+.+++++|.+|..+.+.                     
T Consensus       854 s~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~L~~~~l~~~~~~~~~~~~n~~~~~p~~~  933 (1153)
T PLN03210        854 SRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGALTEASWNGSPSEVAMATDNIHSKLPSTV  933 (1153)
T ss_pred             CCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcccccccCCCCchhhhhhcccccccCCchh
Confidence            9999999999999999999999999999988886544   4566789999999865442                     


Q ss_pred             --CCCCc----------------ccccCCCCCCcccccCCCCCceEE-EECCCCCCCCCCeeeeeeEEEEecCCCCCCCC
Q 040119          138 --YWRDC----------------SIVVPGSEIPEWFEYQNNEGSSIT-ISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYY  198 (366)
Q Consensus       138 --~f~~~----------------~~~l~g~~iP~~f~~~~~~g~~~~-l~L~~n~~~~~~~~gf~~c~v~s~~~~~~~~~  198 (366)
                        .|.+|                .+.+||.++|+||.|++ .|++++ +.+++.|+ ...+.||++|+|+++.+..  ..
T Consensus       934 ~l~f~nC~~L~~~a~l~~~~~~~~~~l~g~evp~~f~hr~-~g~sl~~i~l~~~~~-~~~~~~f~~c~v~~~~~~~--~~ 1009 (1153)
T PLN03210        934 CINFINCFNLDQEALLQQQSIFKQLILSGEEVPSYFTHRT-TGASLTNIPLLHISP-CQPFFRFRACAVVDSESFF--II 1009 (1153)
T ss_pred             ccccccccCCCchhhhcccccceEEECCCccCchhccCCc-ccceeeeeccCCccc-CCCccceEEEEEEecCccc--cC
Confidence              35666                35789999999999999 999998 99999898 7789999999999874321  11


Q ss_pred             CCCCCCCeEEEEEecCCCCCCCcceEEeeccCCcCCCcEEEEEEeCC-----------CeeEEEEEe-----CCCCeEeE
Q 040119          199 NRWSPDPVHMLSIYSKPTTSGFSGFEFRKQIGQAMSDHLFLYYQNRG-----------AISEVEFSS-----PSGLELKR  262 (366)
Q Consensus       199 ~~~~~~~~~c~~~~~~~~~~~~~~~~~~~~~~~~~sdHl~l~~~~~~-----------~~~~v~~~F-----~~~~~Vk~  262 (366)
                      .....+.+.|++....|........ ..........+|+++|.....           .++|+.++|     ...++||+
T Consensus      1010 ~~~~~~~~~c~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~ 1088 (1153)
T PLN03210       1010 SVSFDIQVCCRFIDRLGNHFDSPYQ-PHVFSVTKKGSHLVIFDCCFPLNEDNAPLAELNYDHVDIQFRLTNKNSQLKLKG 1088 (1153)
T ss_pred             CCceeEEEEEEEECCCCCccccCCC-ceeEeeeccccceEEecccccccccccchhccCCceeeEEEEEecCCCCeEEEe
Confidence            1233456777777633322110000 000111335667766532211           125655555     33469999


Q ss_pred             eeEEEEEeccCC
Q 040119          263 CGVHPIYVHQGD  274 (366)
Q Consensus       263 CGv~liy~~~d~  274 (366)
                      ||||++| +.+.
T Consensus      1089 cg~~~~~-~~~~ 1099 (1153)
T PLN03210       1089 CGIRLSE-DDSS 1099 (1153)
T ss_pred             eeEEEec-cCCC
Confidence            9999999 5443

syringae 6; Provisional

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=1.4e-13  Score=151.11  Aligned_cols=140  Identities=22%  Similarity=0.271  Sum_probs=79.6

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCC-ccchhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~lP~~i~~L~~L~~L~  103 (366)
                      ++|+.|++++|.+.+.+|..++++++|+.|+|++|.+. +.+|..++++++|++|+|++|.+. .+|..++++++|+.|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLV-GKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCccc-ccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEE
Confidence            44555555555555555666666666666666666665 556666666666666666666655 4566666666666666


Q ss_pred             ccCCcCccCCCCC---CcccceecccC-------------CcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEE
Q 040119          104 LKDCKMLQNLPRL---PASIHGIFLDG-------------CVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITI  167 (366)
Q Consensus       104 L~~n~~l~~lp~l---p~~L~~L~~~~-------------c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l  167 (366)
                      |++|++.+.+|..   ..+|+.|++++             +++|+.|++.     .+.+.| .+|.+|....   ++..+
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~-----~n~l~~-~~p~~l~~l~---~L~~L  289 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY-----QNKLSG-PIPPSIFSLQ---KLISL  289 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECc-----CCeeec-cCchhHhhcc---CcCEE
Confidence            6666655544421   12334443332             2233333333     223333 4777777666   67788


Q ss_pred             ECCCCCC
Q 040119          168 STPPKTY  174 (366)
Q Consensus       168 ~L~~n~~  174 (366)
                      +|+.|.+
T Consensus       290 ~Ls~n~l  296 (968)
T PLN00113        290 DLSDNSL  296 (968)
T ss_pred             ECcCCee
Confidence            8887766

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.48  E-value=1.2e-13  Score=151.69  Aligned_cols=163  Identities=22%  Similarity=0.243  Sum_probs=126.4

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|......+ ....+.+|+.|++++|.+.+.+|..+.++++|++|+|++|.+. +.+|..++.+++|+.|+
T Consensus       140 ~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~  218 (968)
T PLN00113        140 PNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLV-GQIPRELGQMKSLKWIY  218 (968)
T ss_pred             CCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCc-CcCChHHcCcCCccEEE
Confidence            556666666666443323 2345677999999999998889999999999999999999998 88999999999999999


Q ss_pred             ccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCC-------------cCccEeeCCCCCCcc
Q 040119           81 LSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGC-------------VSLETLSDGYWRDCS  143 (366)
Q Consensus        81 Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c-------------~sL~~l~~~~f~~~~  143 (366)
                      |++|++. .+|..++++++|+.|++++|.+.+.+|..   ...|+.|+++++             ++|+.|+++     .
T Consensus       219 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls-----~  293 (968)
T PLN00113        219 LGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLS-----D  293 (968)
T ss_pred             CcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECc-----C
Confidence            9999988 78889999999999999999887766642   235666665543             456666665     3


Q ss_pred             cccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          144 IVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       144 ~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +.+.| .+|.+|....   ++..+++..|.+
T Consensus       294 n~l~~-~~p~~~~~l~---~L~~L~l~~n~~  320 (968)
T PLN00113        294 NSLSG-EIPELVIQLQ---NLEILHLFSNNF  320 (968)
T ss_pred             Ceecc-CCChhHcCCC---CCcEEECCCCcc
Confidence            34444 5899998777   788999998877

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.34  E-value=2.7e-14  Score=123.48  Aligned_cols=115  Identities=25%  Similarity=0.398  Sum_probs=70.1

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      .+|+.|++.+|++.......+.++.|+.|++..|.+. .+|..|+.++.|+.|||++|++.+..+|..|..|+.|+-|+|
T Consensus        56 ~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldltynnl~e~~lpgnff~m~tlralyl  134 (264)
T KOG0617|consen   56 KNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLTYNNLNENSLPGNFFYMTTLRALYL  134 (264)
T ss_pred             hhhhhhhcccchhhhcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhccccccccccCCcchhHHHHHHHHHh
Confidence            4555566666554444444444555666666666655 566666666666666666666665556666666666666666


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccc
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIH  121 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~  121 (366)
                      +.|.|..+|..+++|++|+.|.+.+|.++    .+|..++
T Consensus       135 ~dndfe~lp~dvg~lt~lqil~lrdndll----~lpkeig  170 (264)
T KOG0617|consen  135 GDNDFEILPPDVGKLTNLQILSLRDNDLL----SLPKEIG  170 (264)
T ss_pred             cCCCcccCChhhhhhcceeEEeeccCchh----hCcHHHH
Confidence            66666667777777777777777777644    3444444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.19  E-value=1.5e-12  Score=131.03  Aligned_cols=96  Identities=25%  Similarity=0.406  Sum_probs=81.5

Q ss_pred             CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119           23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI  102 (366)
Q Consensus        23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L  102 (366)
                      .+.+|..+++|.|.+. .+|..+.++.+|+.|+||+|.|++  +...++...+|++|+|++|.++.+|.++..|++|+.|
T Consensus       220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~ite--L~~~~~~W~~lEtLNlSrNQLt~LP~avcKL~kL~kL  296 (1255)
T KOG0444|consen  220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKITE--LNMTEGEWENLETLNLSRNQLTVLPDAVCKLTKLTKL  296 (1255)
T ss_pred             hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCceee--eeccHHHHhhhhhhccccchhccchHHHhhhHHHHHH
Confidence            3456788899999987 899999999999999999999976  7777788888999999999999999999999999999


Q ss_pred             EccCCcCccCCCCCCccccee
Q 040119          103 FLKDCKMLQNLPRLPASIHGI  123 (366)
Q Consensus       103 ~L~~n~~l~~lp~lp~~L~~L  123 (366)
                      ++.+|++.  ...+|+.+..|
T Consensus       297 y~n~NkL~--FeGiPSGIGKL  315 (1255)
T KOG0444|consen  297 YANNNKLT--FEGIPSGIGKL  315 (1255)
T ss_pred             HhccCccc--ccCCccchhhh
Confidence            99999865  45667766554

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.15  E-value=5.9e-12  Score=126.83  Aligned_cols=106  Identities=25%  Similarity=0.317  Sum_probs=72.2

Q ss_pred             CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119            2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE   78 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~   78 (366)
                      +.|+.+++..|+..  ..++....+.-|+.|+||+|.+. ++|..+..-+++-.|+||+|+|.  .||.. +-+|+-|-.
T Consensus        78 p~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~Ie--tIPn~lfinLtDLLf  154 (1255)
T KOG0444|consen   78 PRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIE--TIPNSLFINLTDLLF  154 (1255)
T ss_pred             hhhHHHhhhccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccc--cCCchHHHhhHhHhh
Confidence            44445555555421  11122223344777888888876 77877777778888888888883  47765 457777888


Q ss_pred             EEccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |+|++|.+..+|+.+..|.+|+.|.|++|++.
T Consensus       155 LDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~  186 (1255)
T KOG0444|consen  155 LDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLN  186 (1255)
T ss_pred             hccccchhhhcCHHHHHHhhhhhhhcCCChhh
Confidence            88888888888888888888888888888753

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.15  E-value=1.8e-12  Score=112.33  Aligned_cols=124  Identities=25%  Similarity=0.395  Sum_probs=101.2

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      .++..|.|++|+..+-.|....+.+|+.|++.+|++. .+|.+++.|++|+.|+++-|++.  .+|..||.++.|+.|||
T Consensus        33 s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~--~lprgfgs~p~levldl  109 (264)
T KOG0617|consen   33 SNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN--ILPRGFGSFPALEVLDL  109 (264)
T ss_pred             hhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh--cCccccCCCchhhhhhc
Confidence            4566788888887777777777888899999999987 88888999999999999998884  48999999999999999


Q ss_pred             cCCCCC--ccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           82 SGNNFF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        82 s~N~~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      ..|++.  .+|..+..++.|+-|+|++|.+-    -+|+.+.     .+++|+.+.+.
T Consensus       110 tynnl~e~~lpgnff~m~tlralyl~dndfe----~lp~dvg-----~lt~lqil~lr  158 (264)
T KOG0617|consen  110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFE----ILPPDVG-----KLTNLQILSLR  158 (264)
T ss_pred             cccccccccCCcchhHHHHHHHHHhcCCCcc----cCChhhh-----hhcceeEEeec
Confidence            999887  78888888888999999988743    4566665     66677777654

>PLN03210 Resistant to P

Probab=99.14  E-value=3e-10  Score=127.06  Aligned_cols=121  Identities=27%  Similarity=0.353  Sum_probs=64.4

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.|+|.+|+..........+.+|+.|+++++.....+|. +..+++|+.|+|++|... ..+|..++.|++|+.|+|+
T Consensus       612 ~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L-~~lp~si~~L~~L~~L~L~  689 (1153)
T PLN03210        612 NLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSL-VELPSSIQYLNKLEDLDMS  689 (1153)
T ss_pred             CCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCc-cccchhhhccCCCCEEeCC
Confidence            44455555544222111122344555666655543334553 555666666666665544 4566666666666666666


Q ss_pred             CC-CCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceeccc
Q 040119           83 GN-NFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLD  126 (366)
Q Consensus        83 ~N-~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~  126 (366)
                      +| ++..+|..+ ++++|+.|++++|..++.+|..+.+|+.|++.
T Consensus       690 ~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~~~nL~~L~L~  733 (1153)
T PLN03210        690 RCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDISTNISWLDLD  733 (1153)
T ss_pred             CCCCcCccCCcC-CCCCCCEEeCCCCCCccccccccCCcCeeecC
Confidence            53 345556544 55666666666666555555555555555543

syringae 6; Provisional

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.04  E-value=1.1e-10  Score=102.98  Aligned_cols=126  Identities=26%  Similarity=0.316  Sum_probs=52.7

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~L~L   81 (366)
                      +++.|+|++|.+.........+..|+.|++++|.+. .++. +..++.|+.|+|++|.|+.  +++.+ ..+++|+.|+|
T Consensus        20 ~~~~L~L~~n~I~~Ie~L~~~l~~L~~L~Ls~N~I~-~l~~-l~~L~~L~~L~L~~N~I~~--i~~~l~~~lp~L~~L~L   95 (175)
T PF14580_consen   20 KLRELNLRGNQISTIENLGATLDKLEVLDLSNNQIT-KLEG-LPGLPRLKTLDLSNNRISS--ISEGLDKNLPNLQELYL   95 (175)
T ss_dssp             ----------------S--TT-TT--EEE-TTS--S---TT-----TT--EEE--SS---S---CHHHHHH-TT--EEE-
T ss_pred             ccccccccccccccccchhhhhcCCCEEECCCCCCc-cccC-ccChhhhhhcccCCCCCCc--cccchHHhCCcCCEEEC
Confidence            578899999986655444445677999999999997 6654 8889999999999999964  66554 35889999999


Q ss_pred             cCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           82 SGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        82 s~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      ++|+|..+-  ..+..+++|+.|+|.+|+....     ..-+...+..+++|+.|+..
T Consensus        96 ~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-----~~YR~~vi~~lP~Lk~LD~~  148 (175)
T PF14580_consen   96 SNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-----KNYRLFVIYKLPSLKVLDGQ  148 (175)
T ss_dssp             TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-----TTHHHHHHHH-TT-SEETTE
T ss_pred             cCCcCCChHHhHHHHcCCCcceeeccCCcccch-----hhHHHHHHHHcChhheeCCE
Confidence            999998554  4677889999999999986532     13333445578888888754

>PLN03150 hypothetical protein; Provisional

Probab=99.00  E-value=8.2e-10  Score=116.08  Aligned_cols=88  Identities=27%  Similarity=0.434  Sum_probs=83.9

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCC-ccchhhhCCCCccEEEcc
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIFLK  105 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~lP~~i~~L~~L~~L~L~  105 (366)
                      +..|+|++|.+.+.+|..+..|++|+.|+|++|++. |.+|..++.+++|+.|+|++|++. .+|..+++|++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~-g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-GNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCccc-CcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence            778999999999999999999999999999999998 899999999999999999999998 899999999999999999


Q ss_pred             CCcCccCCCC
Q 040119          106 DCKMLQNLPR  115 (366)
Q Consensus       106 ~n~~l~~lp~  115 (366)
                      +|++.+.+|.
T Consensus       499 ~N~l~g~iP~  508 (623)
T PLN03150        499 GNSLSGRVPA  508 (623)
T ss_pred             CCcccccCCh
Confidence            9999887764

>PLN03150 hypothetical protein; Provisional

Probab=98.98  E-value=1.3e-09  Score=114.48  Aligned_cols=112  Identities=25%  Similarity=0.344  Sum_probs=96.6

Q ss_pred             ccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            4 LKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      ++.|+|++|......+. ...+.+|+.|+|++|.+.+.+|..+..+++|+.|+|++|+++ |.+|..++.|++|+.|+|+
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~ls-g~iP~~l~~L~~L~~L~Ls  498 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN-GSIPESLGQLTSLRILNLN  498 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCC-CCCchHHhcCCCCCEEECc
Confidence            67899999986544443 445678999999999999999999999999999999999999 9999999999999999999


Q ss_pred             CCCCC-ccchhhhCC-CCccEEEccCCcCccCCCCC
Q 040119           83 GNNFF-TLPASIYRL-SKLSKIFLKDCKMLQNLPRL  116 (366)
Q Consensus        83 ~N~~~-~lP~~i~~L-~~L~~L~L~~n~~l~~lp~l  116 (366)
                      +|+++ .+|..++.+ .++..+++.+|..+...|.+
T Consensus       499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l  534 (623)
T PLN03150        499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL  534 (623)
T ss_pred             CCcccccCChHHhhccccCceEEecCCccccCCCCC
Confidence            99999 899988874 47788999999877655543

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.97  E-value=2.2e-09  Score=114.31  Aligned_cols=113  Identities=20%  Similarity=0.333  Sum_probs=58.3

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.|+|++|++..- +. ....+|+.|++++|.+. .+|..+.  .+|+.|+|++|++.+  +|..+.  ++|+.|+|+
T Consensus       200 ~L~~L~Ls~N~LtsL-P~-~l~~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~~--LP~~l~--s~L~~L~Ls  270 (754)
T PRK15370        200 QITTLILDNNELKSL-PE-NLQGNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRITE--LPERLP--SALQSLDLF  270 (754)
T ss_pred             CCcEEEecCCCCCcC-Ch-hhccCCCEEECCCCccc-cCChhhh--ccccEEECcCCccCc--CChhHh--CCCCEEECc
Confidence            455666666653321 11 11235666666666655 4554332  356666666666643  555443  356666666


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCccCCCC-CCcccceecccC
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDG  127 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~  127 (366)
                      +|+++.+|..+.  .+|+.|+|++|++.. +|. +|.+|+.|++++
T Consensus       271 ~N~L~~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp~sL~~L~Ls~  313 (754)
T PRK15370        271 HNKISCLPENLP--EELRYLSVYDNSIRT-LPAHLPSGITHLNVQS  313 (754)
T ss_pred             CCccCccccccC--CCCcEEECCCCcccc-CcccchhhHHHHHhcC
Confidence            666666665442  356666666665432 332 344455555443

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.95  E-value=2.1e-09  Score=114.32  Aligned_cols=152  Identities=24%  Similarity=0.295  Sum_probs=81.2

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCC-----------------CCCcEEEeecCCCCCCC
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGL-----------------CSLTKLDISYCDLGEGA   65 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L-----------------~~L~~L~Ls~n~l~~~~   65 (366)
                      +|+.|+|++|++....   ...++|+.|++++|.+. .+|.....|                 .+|+.|+|++|+|..  
T Consensus       283 ~L~~L~Ls~N~Lt~LP---~~p~~L~~LdLS~N~L~-~Lp~lp~~L~~L~Ls~N~L~~LP~lp~~Lq~LdLS~N~Ls~--  356 (788)
T PRK15387        283 GLCKLWIFGNQLTSLP---VLPPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPTLPSGLQELSVSDNQLAS--  356 (788)
T ss_pred             hcCEEECcCCcccccc---ccccccceeECCCCccc-cCCCCcccccccccccCccccccccccccceEecCCCccCC--
Confidence            4555555555533211   12345777888887776 444421110                 234555555555532  


Q ss_pred             CCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCc---
Q 040119           66 IPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDC---  142 (366)
Q Consensus        66 lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~---  142 (366)
                      +|...   .+|+.|++++|.|+.+|..   ..+|+.|+|++|++. .+|.+|+.|+.|+++++. |..++.. +.+.   
T Consensus       357 LP~lp---~~L~~L~Ls~N~L~~LP~l---~~~L~~LdLs~N~Lt-~LP~l~s~L~~LdLS~N~-LssIP~l-~~~L~~L  427 (788)
T PRK15387        357 LPTLP---SELYKLWAYNNRLTSLPAL---PSGLKELIVSGNRLT-SLPVLPSELKELMVSGNR-LTSLPML-PSGLLSL  427 (788)
T ss_pred             CCCCC---cccceehhhccccccCccc---ccccceEEecCCccc-CCCCcccCCCEEEccCCc-CCCCCcc-hhhhhhh
Confidence            44321   2344455555555555432   235677777777644 467667777777776653 3333211 0000   


Q ss_pred             ---ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          143 ---SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       143 ---~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                         .+.+  ..+|..|....   ++..++|..|.+
T Consensus       428 ~Ls~NqL--t~LP~sl~~L~---~L~~LdLs~N~L  457 (788)
T PRK15387        428 SVYRNQL--TRLPESLIHLS---SETTVNLEGNPL  457 (788)
T ss_pred             hhccCcc--cccChHHhhcc---CCCeEECCCCCC
Confidence               2222  25888877666   778899999988

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.94  E-value=2.5e-10  Score=114.64  Aligned_cols=85  Identities=25%  Similarity=0.328  Sum_probs=57.0

Q ss_pred             CCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCcc
Q 040119           23 LPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS  100 (366)
Q Consensus        23 ~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~  100 (366)
                      .++.|+.|+|+.|.+. .+| +++..-.+++.|+|++|.|+. .--..|..|.+|..|.|++|.++.+|. .+++|++|+
T Consensus       147 ~l~alrslDLSrN~is-~i~~~sfp~~~ni~~L~La~N~It~-l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~  224 (873)
T KOG4194|consen  147 ALPALRSLDLSRNLIS-EIPKPSFPAKVNIKKLNLASNRITT-LETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLE  224 (873)
T ss_pred             hHhhhhhhhhhhchhh-cccCCCCCCCCCceEEeeccccccc-cccccccccchheeeecccCcccccCHHHhhhcchhh
Confidence            3445666666666665 333 334555567777777777752 224557777788888888888888875 566688888


Q ss_pred             EEEccCCcC
Q 040119          101 KIFLKDCKM  109 (366)
Q Consensus       101 ~L~L~~n~~  109 (366)
                      .|+|..|++
T Consensus       225 ~LdLnrN~i  233 (873)
T KOG4194|consen  225 SLDLNRNRI  233 (873)
T ss_pred             hhhccccce
Confidence            888888873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.94  E-value=1.3e-10  Score=116.48  Aligned_cols=113  Identities=20%  Similarity=0.187  Sum_probs=88.9

Q ss_pred             CCCccEEEeeCCC-CCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCK-GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~-~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |.++++|+|+.|+ ..+...+..++..|+.|+++.|.|...-++++...++|+.|+|++|+|+ .--+.+|..|+.|++|
T Consensus       268 l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~-~l~~~sf~~L~~Le~L  346 (873)
T KOG4194|consen  268 LEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRIT-RLDEGSFRVLSQLEEL  346 (873)
T ss_pred             ecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccc-cCChhHHHHHHHhhhh
Confidence            4578888888888 4455566677788888888888888777777888888899999998887 3445678888888888


Q ss_pred             EccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119           80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      +|+.|.+..+.+ .+..+++|+.|||++|.+...|.
T Consensus       347 nLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IE  382 (873)
T KOG4194|consen  347 NLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIE  382 (873)
T ss_pred             cccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEe
Confidence            888888887764 67778888888888888776554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=98.92  E-value=3.6e-09  Score=112.71  Aligned_cols=115  Identities=23%  Similarity=0.328  Sum_probs=85.3

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|++|++... +. ....+|+.|++++|.+. .+|..+.  ++|+.|+|++|++..  +|..+.  .+|+.|+|
T Consensus       220 ~nL~~L~Ls~N~LtsL-P~-~l~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~~--LP~~l~--~sL~~L~L  290 (754)
T PRK15370        220 GNIKTLYANSNQLTSI-PA-TLPDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKISC--LPENLP--EELRYLSV  290 (754)
T ss_pred             cCCCEEECCCCccccC-Ch-hhhccccEEECcCCccC-cCChhHh--CCCCEEECcCCccCc--cccccC--CCCcEEEC
Confidence            5799999999985422 21 12346899999999997 7887664  589999999999963  887765  58999999


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCC-CCcccceecccCC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC  128 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c  128 (366)
                      ++|+|+.+|..+.  ++|+.|++++|++.. +|. +|++|+.|++++|
T Consensus       291 s~N~Lt~LP~~lp--~sL~~L~Ls~N~Lt~-LP~~l~~sL~~L~Ls~N  335 (754)
T PRK15370        291 YDNSIRTLPAHLP--SGITHLNVQSNSLTA-LPETLPPGLKTLEAGEN  335 (754)
T ss_pred             CCCccccCcccch--hhHHHHHhcCCcccc-CCccccccceeccccCC
Confidence            9999998886543  467778888877553 553 5667777776655

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=98.91  E-value=8.4e-09  Score=109.75  Aligned_cols=17  Identities=41%  Similarity=0.624  Sum_probs=8.7

Q ss_pred             CCCCEEEccCCCCCccc
Q 040119           74 CSLEELHLSGNNFFTLP   90 (366)
Q Consensus        74 ~sL~~L~Ls~N~~~~lP   90 (366)
                      ++|+.|+|++|+|+.+|
T Consensus       302 ~~L~~LdLS~N~L~~Lp  318 (788)
T PRK15387        302 PGLQELSVSDNQLASLP  318 (788)
T ss_pred             cccceeECCCCccccCC
Confidence            34555555555555444

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.72  E-value=9e-11  Score=113.25  Aligned_cols=165  Identities=22%  Similarity=0.257  Sum_probs=88.9

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      |..|.|++|......+....+..|.+|.+++|.+. ++|++++.+..++.|+.+.|++++  +|..++.+.+|..|+.+.
T Consensus        47 l~~lils~N~l~~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~--lp~~i~s~~~l~~l~~s~  123 (565)
T KOG0472|consen   47 LQKLILSHNDLEVLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSE--LPEQIGSLISLVKLDCSS  123 (565)
T ss_pred             hhhhhhccCchhhccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhh--ccHHHhhhhhhhhhhccc
Confidence            44555666655544444444455556666666655 555555555555555555555543  555555555555555555


Q ss_pred             CCCCccchhhhCCCCccEEEccCCcCccC-------------------CCCCCcccceecccCCcCccEeeCCCCCCccc
Q 040119           84 NNFFTLPASIYRLSKLSKIFLKDCKMLQN-------------------LPRLPASIHGIFLDGCVSLETLSDGYWRDCSI  144 (366)
Q Consensus        84 N~~~~lP~~i~~L~~L~~L~L~~n~~l~~-------------------lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~  144 (366)
                      |.+.++|++|+.+-.|..|+..+|++...                   +.++|+..-     ++++|+.++..     .+
T Consensus       124 n~~~el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~~l~~~~i-----~m~~L~~ld~~-----~N  193 (565)
T KOG0472|consen  124 NELKELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLKALPENHI-----AMKRLKHLDCN-----SN  193 (565)
T ss_pred             cceeecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchhhCCHHHH-----HHHHHHhcccc-----hh
Confidence            55555555555555555555555542210                   112333222     34455555543     33


Q ss_pred             ccCCCCCCcccccCCCCCceEEEECCCCCCCCCCeeeeeeEEEE
Q 040119          145 VVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVF  188 (366)
Q Consensus       145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~~~~~~~gf~~c~v~  188 (366)
                      .+  ..+|.-+.-..   ++..++|..|.+  ..+|.|--|-.+
T Consensus       194 ~L--~tlP~~lg~l~---~L~~LyL~~Nki--~~lPef~gcs~L  230 (565)
T KOG0472|consen  194 LL--ETLPPELGGLE---SLELLYLRRNKI--RFLPEFPGCSLL  230 (565)
T ss_pred             hh--hcCChhhcchh---hhHHHHhhhccc--ccCCCCCccHHH
Confidence            33  24787777655   666777788877  555666666554

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=98.70  E-value=3.4e-09  Score=102.57  Aligned_cols=119  Identities=19%  Similarity=0.281  Sum_probs=78.6

Q ss_pred             EEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 040119            7 LSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF   86 (366)
Q Consensus         7 L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~   86 (366)
                      +.+++|....+......+++|..|++++|.+. .+|..++.+..|+.|||+.|++..  +|..+..+..|+.+-.+.|++
T Consensus       417 l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr~--lP~~~y~lq~lEtllas~nqi  493 (565)
T KOG0472|consen  417 LVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFRM--LPECLYELQTLETLLASNNQI  493 (565)
T ss_pred             HHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheeccccccccc--chHHHhhHHHHHHHHhccccc
Confidence            34566665555555566677888888888876 788888888888888888887743  666666666666665556666


Q ss_pred             Cccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           87 FTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        87 ~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      ..+|++ ++++.+|..|||.+|.+    ..+|+.++     +|++|+++.+.
T Consensus       494 ~~vd~~~l~nm~nL~tLDL~nNdl----q~IPp~Lg-----nmtnL~hLeL~  536 (565)
T KOG0472|consen  494 GSVDPSGLKNMRNLTTLDLQNNDL----QQIPPILG-----NMTNLRHLELD  536 (565)
T ss_pred             cccChHHhhhhhhcceeccCCCch----hhCChhhc-----cccceeEEEec
Confidence            666544 66666666666666652    23445555     66666666554

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.67  E-value=1.2e-09  Score=114.50  Aligned_cols=125  Identities=23%  Similarity=0.338  Sum_probs=97.9

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +.|+.|+|.+|.+.. -.+......+|+.|+|++|.+. .+|++ +.+|..|+.|+||||.++.  +|..+..+..|++|
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~-~fpas~~~kle~LeeL~LSGNkL~~--Lp~tva~~~~L~tL  435 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLN-SFPASKLRKLEELEELNLSGNKLTT--LPDTVANLGRLHTL  435 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccc-cCCHHHHhchHHhHHHhcccchhhh--hhHHHHhhhhhHHH
Confidence            346777888887443 3445556678999999999886 67754 5778889999999999965  89888889999999


Q ss_pred             EccCCCCCccchhhhCCCCccEEEccCCcCcc-CCC-CCC-cccceecccCCcC
Q 040119           80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ-NLP-RLP-ASIHGIFLDGCVS  130 (366)
Q Consensus        80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~-~lp-~lp-~~L~~L~~~~c~s  130 (366)
                      ...+|.+..+| .+.+++.|+.+|++.|.+.. .+| .+| +.|++|++++.+.
T Consensus       436 ~ahsN~l~~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~LkyLdlSGN~~  488 (1081)
T KOG0618|consen  436 RAHSNQLLSFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKYLDLSGNTR  488 (1081)
T ss_pred             hhcCCceeech-hhhhcCcceEEecccchhhhhhhhhhCCCcccceeeccCCcc
Confidence            99999999999 78899999999999988542 234 346 7899999888764

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.55  E-value=5.7e-08  Score=70.50  Aligned_cols=58  Identities=36%  Similarity=0.502  Sum_probs=43.9

Q ss_pred             CCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEccCCc
Q 040119           49 CSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        49 ~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~  108 (366)
                      ++|+.|+|++|++.+  +| ..|..+++|+.|++++|+++.+| ..+.++++|++|++++|+
T Consensus         1 p~L~~L~l~~n~l~~--i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    1 PNLESLDLSNNKLTE--IPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TTESEEEETSSTESE--ECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             CcCcEEECCCCCCCc--cCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            467788888887753  55 56777888888888888888776 467788888888888876

...

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=98.52  E-value=6.8e-08  Score=85.37  Aligned_cols=104  Identities=19%  Similarity=0.202  Sum_probs=53.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |.+|+.|+|++|.+..- .....+..|+.|++++|.+. .++..+ ..+++|+.|+|++|+|.+-.--..+..+++|+.|
T Consensus        41 l~~L~~L~Ls~N~I~~l-~~l~~L~~L~~L~L~~N~I~-~i~~~l~~~lp~L~~L~L~~N~I~~l~~l~~L~~l~~L~~L  118 (175)
T PF14580_consen   41 LDKLEVLDLSNNQITKL-EGLPGLPRLKTLDLSNNRIS-SISEGLDKNLPNLQELYLSNNKISDLNELEPLSSLPKLRVL  118 (175)
T ss_dssp             -TT--EEE-TTS--S---TT----TT--EEE--SS----S-CHHHHHH-TT--EEE-TTS---SCCCCGGGGG-TT--EE
T ss_pred             hcCCCEEECCCCCCccc-cCccChhhhhhcccCCCCCC-ccccchHHhCCcCCEEECcCCcCCChHHhHHHHcCCCccee
Confidence            46899999999985543 34556788999999999998 665545 3689999999999999741223557789999999


Q ss_pred             EccCCCCCccch----hhhCCCCccEEEccC
Q 040119           80 HLSGNNFFTLPA----SIYRLSKLSKIFLKD  106 (366)
Q Consensus        80 ~Ls~N~~~~lP~----~i~~L~~L~~L~L~~  106 (366)
                      +|.+|.++..+.    -|..+++|+.||-..
T Consensus       119 ~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~~~  149 (175)
T PF14580_consen  119 SLEGNPVCEKKNYRLFVIYKLPSLKVLDGQD  149 (175)
T ss_dssp             E-TT-GGGGSTTHHHHHHHH-TT-SEETTEE
T ss_pred             eccCCcccchhhHHHHHHHHcChhheeCCEE
Confidence            999999986653    477899999988543

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.50  E-value=8.4e-09  Score=103.54  Aligned_cols=146  Identities=21%  Similarity=0.242  Sum_probs=94.0

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN   84 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N   84 (366)
                      +.|.|..|.+.........+..|++|+++.|.++ .+|..+..|+ |+.|-+++|+++  .+|..++.+..|..|+.+.|
T Consensus       101 e~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl~--~lp~~ig~~~tl~~ld~s~n  176 (722)
T KOG0532|consen  101 ESLILYHNCIRTIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKLT--SLPEEIGLLPTLAHLDVSKN  176 (722)
T ss_pred             HHHHHHhccceecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCccc--cCCcccccchhHHHhhhhhh
Confidence            3344444443332233334445777777777776 6777666654 777777777774  47888887777888888888


Q ss_pred             CCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCce
Q 040119           85 NFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSS  164 (366)
Q Consensus        85 ~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~  164 (366)
                      ++.++|..+++|.+|+.|.+..|+++.    +|..+.      +=.|.+|+++     .+.+  ..||-.|.+++   .+
T Consensus       177 ei~slpsql~~l~slr~l~vrRn~l~~----lp~El~------~LpLi~lDfS-----cNki--s~iPv~fr~m~---~L  236 (722)
T KOG0532|consen  177 EIQSLPSQLGYLTSLRDLNVRRNHLED----LPEELC------SLPLIRLDFS-----CNKI--SYLPVDFRKMR---HL  236 (722)
T ss_pred             hhhhchHHhhhHHHHHHHHHhhhhhhh----CCHHHh------CCceeeeecc-----cCce--eecchhhhhhh---hh
Confidence            888888888888888888887777553    333332      1234555555     1222  24777777776   77


Q ss_pred             EEEECCCCCC
Q 040119          165 ITISTPPKTY  174 (366)
Q Consensus       165 ~~l~L~~n~~  174 (366)
                      ++|.|-.|.+
T Consensus       237 q~l~LenNPL  246 (722)
T KOG0532|consen  237 QVLQLENNPL  246 (722)
T ss_pred             eeeeeccCCC
Confidence            8888877777

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.46  E-value=1.2e-07  Score=68.68  Aligned_cols=61  Identities=31%  Similarity=0.390  Sum_probs=47.2

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCC
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF   86 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~   86 (366)
                      ++|+.|+++.|.+...-+..|.++++|+.|+|++|++. ..-|..|..+++|++|++++|+|
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~-~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLT-SIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSES-EEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccC-ccCHHHHcCCCCCCEEeCcCCcC
Confidence            35777888888777444457788899999999999886 44456788899999999998875

...

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.42  E-value=1.6e-07  Score=93.10  Aligned_cols=100  Identities=26%  Similarity=0.387  Sum_probs=58.9

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCC-CCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~  103 (366)
                      ..+..|.+..|.+. .+|.....+. +|+.|++++|.+.+  +|..++.++.|+.|+++.|++..+|...+.++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~~--l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIES--LPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccc-cCccccccchhhcccccccccchhh--hhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence            44666666666665 5555555553 66666666666643  55566666666666666666666666555666666666


Q ss_pred             ccCCcCccCCCC---CCcccceecccCC
Q 040119          104 LKDCKMLQNLPR---LPASIHGIFLDGC  128 (366)
Q Consensus       104 L~~n~~l~~lp~---lp~~L~~L~~~~c  128 (366)
                      +++|++. .+|.   .+..+..|.+++.
T Consensus       193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N  219 (394)
T COG4886         193 LSGNKIS-DLPPEIELLSALEELDLSNN  219 (394)
T ss_pred             ccCCccc-cCchhhhhhhhhhhhhhcCC
Confidence            6666633 2443   3444555554444

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.42  E-value=2.7e-08  Score=95.02  Aligned_cols=109  Identities=19%  Similarity=0.224  Sum_probs=58.5

Q ss_pred             CCccEEEeeCCCCCC-CC------CCcCCCCCccEEECcCCCCCCCCCccCCCCCC---CcEEEeecCCCCCC---CCCc
Q 040119            2 KNLKELSFRGCKGSP-SS------ASWFLPFPINLMRWSSDPMALSLPSSLSGLCS---LTKLDISYCDLGEG---AIPS   68 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~------~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~---L~~L~Ls~n~l~~~---~lP~   68 (366)
                      ++|++|+++++.... +.      .......+|+.|++++|.+....+..+..+.+   |+.|++++|++...   .+..
T Consensus        51 ~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~  130 (319)
T cd00116          51 PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAK  130 (319)
T ss_pred             CCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHH
Confidence            346666666665321 10      01122345666777766665444444444444   67777777666410   1223


Q ss_pred             cCCCC-CCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCc
Q 040119           69 GIGNL-CSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        69 ~i~~L-~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      .+..+ ++|+.|+|++|.++     .++..+..+.+|+.|++++|.+.
T Consensus       131 ~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~  178 (319)
T cd00116         131 GLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLANNGIG  178 (319)
T ss_pred             HHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcCCCCc
Confidence            34445 66667777766666     23445555666666666666644

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=98.37  E-value=6.1e-08  Score=92.58  Aligned_cols=108  Identities=23%  Similarity=0.234  Sum_probs=66.6

Q ss_pred             CCccEEEeeCCCCCCC-----CCCcCCCCCccEEECcCCCCCC------CCCccCCCCCCCcEEEeecCCCCCCCCCccC
Q 040119            2 KNLKELSFRGCKGSPS-----SASWFLPFPINLMRWSSDPMAL------SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI   70 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-----~~~~~~~~~L~~L~ls~n~l~~------~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i   70 (366)
                      ++|+.|+|++|.....     .......+.++.++++.+.+.+      .++..+..+++|+.|+|++|.+. +..+..+
T Consensus        23 ~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~~~~~~~  101 (319)
T cd00116          23 LCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALG-PDGCGVL  101 (319)
T ss_pred             hhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCC-hhHHHHH
Confidence            4577777777764221     1112233457777777776651      23345566777888888877775 4445555


Q ss_pred             CCCCC---CCEEEccCCCCC-----ccchhhhCC-CCccEEEccCCcCc
Q 040119           71 GNLCS---LEELHLSGNNFF-----TLPASIYRL-SKLSKIFLKDCKML  110 (366)
Q Consensus        71 ~~L~s---L~~L~Ls~N~~~-----~lP~~i~~L-~~L~~L~L~~n~~l  110 (366)
                      ..+..   |+.|++++|.+.     .+...+..+ ++|+.|++++|.+.
T Consensus       102 ~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~  150 (319)
T cd00116         102 ESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCC
Confidence            44444   788888777776     233455666 77788888877755

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.35  E-value=4.7e-08  Score=102.90  Aligned_cols=109  Identities=26%  Similarity=0.287  Sum_probs=84.5

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.|+|++|....-......+..|+.|+++.|-+. .+|.+..++.+|++|+|.+|.+..  +|.++..+.+|+.|+++
T Consensus        46 ~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~~--lP~~~~~lknl~~LdlS  122 (1081)
T KOG0618|consen   46 KLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQS--LPASISELKNLQYLDLS  122 (1081)
T ss_pred             eeEEeeccccccccCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhhc--CchhHHhhhcccccccc
Confidence            378888888874433333344566888888888886 888888888888888888888854  88888888888999999


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCccCCC
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      .|+|..+|..|..++.+..++.++|..++.++
T Consensus       123 ~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg  154 (1081)
T KOG0618|consen  123 FNHFGPIPLVIEVLTAEEELAASNNEKIQRLG  154 (1081)
T ss_pred             hhccCCCchhHHhhhHHHHHhhhcchhhhhhc
Confidence            99888888888888888888888774444333

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.34  E-value=5.5e-08  Score=91.24  Aligned_cols=102  Identities=24%  Similarity=0.217  Sum_probs=79.5

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      .|+.|||++|.+..........+.++.|++++|.+. .+-. +..|++|+.|||++|.+++  +-..-..|-+.+.|.|+
T Consensus       285 ~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~-~v~n-La~L~~L~~LDLS~N~Ls~--~~Gwh~KLGNIKtL~La  360 (490)
T KOG1259|consen  285 ELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR-TVQN-LAELPQLQLLDLSGNLLAE--CVGWHLKLGNIKTLKLA  360 (490)
T ss_pred             hhhhccccccchhhhhhhhhhccceeEEecccccee-eehh-hhhcccceEeecccchhHh--hhhhHhhhcCEeeeehh
Confidence            478899999986655555566688999999999986 4444 8889999999999999864  54444566677888888


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcC
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      +|.|..+. .++.|.+|..||+++|++
T Consensus       361 ~N~iE~LS-GL~KLYSLvnLDl~~N~I  386 (490)
T KOG1259|consen  361 QNKIETLS-GLRKLYSLVNLDLSSNQI  386 (490)
T ss_pred             hhhHhhhh-hhHhhhhheeccccccch
Confidence            88887665 577788888888888873

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=98.34  E-value=9.8e-08  Score=96.04  Aligned_cols=80  Identities=26%  Similarity=0.383  Sum_probs=41.9

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEc
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFL  104 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L  104 (366)
                      ..|..|+.+.|.+. .+|+.++.|.+|+.|++..|++..  +|..++.| .|..||++.|++..||.+|.+|+.|++|-|
T Consensus       166 ~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~--lp~El~~L-pLi~lDfScNkis~iPv~fr~m~~Lq~l~L  241 (722)
T KOG0532|consen  166 PTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLED--LPEELCSL-PLIRLDFSCNKISYLPVDFRKMRHLQVLQL  241 (722)
T ss_pred             hhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhh--CCHHHhCC-ceeeeecccCceeecchhhhhhhhheeeee
Confidence            33444444444443 444444445555555555555432  45544422 355566666666666666666666666666


Q ss_pred             cCCc
Q 040119          105 KDCK  108 (366)
Q Consensus       105 ~~n~  108 (366)
                      .+|.
T Consensus       242 enNP  245 (722)
T KOG0532|consen  242 ENNP  245 (722)
T ss_pred             ccCC
Confidence            6655

>PRK15386 type III secretion protein GogB; Provisional

Probab=98.34  E-value=3.7e-06  Score=83.31  Aligned_cols=114  Identities=22%  Similarity=0.394  Sum_probs=76.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC-CCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC-DLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++++.|++++|.+..- |  ....+|+.|.++++.-...+|..+  .++|+.|++++| .+  ..+|..      |+.|
T Consensus        51 ~~~l~~L~Is~c~L~sL-P--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L--~sLP~s------Le~L  117 (426)
T PRK15386         51 ARASGRLYIKDCDIESL-P--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEI--SGLPES------VRSL  117 (426)
T ss_pred             hcCCCEEEeCCCCCccc-C--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccc--cccccc------cceE
Confidence            35789999999963332 2  233569999998754444777655  358999999999 55  347754      6667


Q ss_pred             EccCCC---CCccchhhhCCC------------------CccEEEccCCcCccCCCCCCcccceecccC
Q 040119           80 HLSGNN---FFTLPASIYRLS------------------KLSKIFLKDCKMLQNLPRLPASIHGIFLDG  127 (366)
Q Consensus        80 ~Ls~N~---~~~lP~~i~~L~------------------~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~  127 (366)
                      ++.++.   +..+|.++..|.                  +|++|++.+|......+.+|.+|+.|++++
T Consensus       118 ~L~~n~~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is~c~~i~LP~~LP~SLk~L~ls~  186 (426)
T PRK15386        118 EIKGSATDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLTGCSNIILPEKLPESLQSITLHI  186 (426)
T ss_pred             EeCCCCCcccccCcchHhheeccccccccccccccccCCcccEEEecCCCcccCcccccccCcEEEecc
Confidence            777665   457787765542                  577777777775542234677777776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=98.33  E-value=8.7e-08  Score=89.94  Aligned_cols=78  Identities=19%  Similarity=0.228  Sum_probs=63.7

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccC
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKD  106 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~  106 (366)
                      |+.++|++|.++ .+-.++.-++.++.|+++.|.+.+  + .++..|.+|+.|||++|.++++-.+=..|.+.+.|.|+.
T Consensus       286 LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~--v-~nLa~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~  361 (490)
T KOG1259|consen  286 LTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRT--V-QNLAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQ  361 (490)
T ss_pred             hhhccccccchh-hhhhhhhhccceeEEeccccceee--e-hhhhhcccceEeecccchhHhhhhhHhhhcCEeeeehhh
Confidence            778889999887 777778888888999999988873  3 347888888999999988887776666777888888888


Q ss_pred             Cc
Q 040119          107 CK  108 (366)
Q Consensus       107 n~  108 (366)
                      |.
T Consensus       362 N~  363 (490)
T KOG1259|consen  362 NK  363 (490)
T ss_pred             hh
Confidence            87

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=98.20  E-value=4.7e-07  Score=89.75  Aligned_cols=106  Identities=31%  Similarity=0.433  Sum_probs=89.6

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCC-CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPF-PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~-~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +.++.|++.+|......+...... +|+.|+++.|.+. .+|..+..++.|+.|++++|++.+  +|...+.++.|+.|+
T Consensus       116 ~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~--l~~~~~~~~~L~~L~  192 (394)
T COG4886         116 TNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSD--LPKLLSNLSNLNNLD  192 (394)
T ss_pred             cceeEEecCCcccccCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhh--hhhhhhhhhhhhhee
Confidence            468889999988655544444443 8999999999997 787778999999999999999976  888888899999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++|.+..+|..+..+..|+.|.+++|+..
T Consensus       193 ls~N~i~~l~~~~~~~~~L~~l~~~~N~~~  222 (394)
T COG4886         193 LSGNKISDLPPEIELLSALEELDLSNNSII  222 (394)
T ss_pred             ccCCccccCchhhhhhhhhhhhhhcCCcce
Confidence            999999999988888888999999999633

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.14  E-value=1.6e-06  Score=94.17  Aligned_cols=108  Identities=23%  Similarity=0.249  Sum_probs=78.2

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCC--CCCCCCc-cCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDP--MALSLPS-SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~--l~~~lP~-sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      .+.+.+-+|..... +.....+.|+.|-+..|.  +. .++. .|..++.|+.|||++|.-. +.+|..|+.|-+|++|+
T Consensus       525 ~rr~s~~~~~~~~~-~~~~~~~~L~tLll~~n~~~l~-~is~~ff~~m~~LrVLDLs~~~~l-~~LP~~I~~Li~LryL~  601 (889)
T KOG4658|consen  525 VRRMSLMNNKIEHI-AGSSENPKLRTLLLQRNSDWLL-EISGEFFRSLPLLRVLDLSGNSSL-SKLPSSIGELVHLRYLD  601 (889)
T ss_pred             eeEEEEeccchhhc-cCCCCCCccceEEEeecchhhh-hcCHHHHhhCcceEEEECCCCCcc-CcCChHHhhhhhhhccc
Confidence            34555555542211 112233357777777775  44 3443 3677899999999988766 77899999999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      |++..+..+|.++++|.+|.+|++..+..+..+|
T Consensus       602 L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~  635 (889)
T KOG4658|consen  602 LSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIP  635 (889)
T ss_pred             ccCCCccccchHHHHHHhhheecccccccccccc
Confidence            9999999999999999999999998888766554

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=98.06  E-value=3.8e-06  Score=56.93  Aligned_cols=34  Identities=35%  Similarity=0.518  Sum_probs=17.3

Q ss_pred             CCCEEEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119           75 SLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        75 sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      +|++|+|++|+|+.+|..|.+|++|+.|++++|+
T Consensus         2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~   35 (44)
T PF12799_consen    2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNP   35 (44)
T ss_dssp             T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSC
T ss_pred             cceEEEccCCCCcccCchHhCCCCCCEEEecCCC
Confidence            4555555555555555445555555555555554

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.99  E-value=7.4e-06  Score=55.54  Aligned_cols=41  Identities=32%  Similarity=0.502  Sum_probs=35.4

Q ss_pred             CCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch
Q 040119           49 CSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA   91 (366)
Q Consensus        49 ~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~   91 (366)
                      ++|++|+|++|+|++  +|..+++|++|+.|++++|.|+.+|.
T Consensus         1 ~~L~~L~l~~N~i~~--l~~~l~~l~~L~~L~l~~N~i~~i~~   41 (44)
T PF12799_consen    1 KNLEELDLSNNQITD--LPPELSNLPNLETLNLSNNPISDISP   41 (44)
T ss_dssp             TT-SEEEETSSS-SS--HGGHGTTCTTSSEEEETSSCCSBEGG
T ss_pred             CcceEEEccCCCCcc--cCchHhCCCCCCEEEecCCCCCCCcC
Confidence            479999999999975  99889999999999999999998763

...

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.95  E-value=3.9e-06  Score=91.14  Aligned_cols=105  Identities=25%  Similarity=0.314  Sum_probs=87.6

Q ss_pred             CCccEEEeeCCC---CCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            2 KNLKELSFRGCK---GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         2 ~~L~~L~Ls~n~---~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +.|++|-+.+|.   ...+...+..++.|++|+|++|.-.+.+|.+++.|-+|++|+|+++.+..  +|..+++|..|.+
T Consensus       545 ~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~--LP~~l~~Lk~L~~  622 (889)
T KOG4658|consen  545 PKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISH--LPSGLGNLKKLIY  622 (889)
T ss_pred             CccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccc--cchHHHHHHhhhe
Confidence            468888888885   33333446778899999999998878999999999999999999999965  9999999999999


Q ss_pred             EEccCCCCC-ccchhhhCCCCccEEEccCCc
Q 040119           79 LHLSGNNFF-TLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        79 L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      |++..+... .+|.-+..|++|++|.+..-.
T Consensus       623 Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  623 LNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             eccccccccccccchhhhcccccEEEeeccc
Confidence            999988755 556666669999999986543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.85  E-value=6e-07  Score=75.54  Aligned_cols=104  Identities=17%  Similarity=0.245  Sum_probs=80.3

Q ss_pred             ccEEEeeCCCCC-CCCC--CcCCCCCccEEECcCCCCCCCCCccCCC-CCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            4 LKELSFRGCKGS-PSSA--SWFLPFPINLMRWSSDPMALSLPSSLSG-LCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         4 L~~L~Ls~n~~~-~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~-L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +..|+|+.|++- .+.-  .......|...++++|.+. .+|..|.. ++.+++|+|++|.|++  +|..+..++.|+.|
T Consensus        29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk-~fp~kft~kf~t~t~lNl~~neisd--vPeE~Aam~aLr~l  105 (177)
T KOG4579|consen   29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFK-KFPKKFTIKFPTATTLNLANNEISD--VPEELAAMPALRSL  105 (177)
T ss_pred             hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhh-hCCHHHhhccchhhhhhcchhhhhh--chHHHhhhHHhhhc
Confidence            456778888633 1111  1223345777899999987 78877755 4588999999999976  99889999999999


Q ss_pred             EccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++.|.|...|.-|..|.+|..|+..+|.+.
T Consensus       106 Nl~~N~l~~~p~vi~~L~~l~~Lds~~na~~  136 (177)
T KOG4579|consen  106 NLRFNPLNAEPRVIAPLIKLDMLDSPENARA  136 (177)
T ss_pred             ccccCccccchHHHHHHHhHHHhcCCCCccc
Confidence            9999999999988888999999998888754

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.83  E-value=3.9e-06  Score=82.38  Aligned_cols=108  Identities=19%  Similarity=0.118  Sum_probs=53.0

Q ss_pred             CCCccEEEeeCCCCCCCCC---CcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSA---SWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~---~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL   76 (366)
                      |++++.|||+.|-+....+   ....+++|+.|+++.|.+....-+.. ..+++|+.|.|+.|.++...+-......++|
T Consensus       145 ~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~lK~L~l~~CGls~k~V~~~~~~fPsl  224 (505)
T KOG3207|consen  145 LPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSHLKQLVLNSCGLSWKDVQWILLTFPSL  224 (505)
T ss_pred             CCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhhhheEEeccCCCCHHHHHHHHHhCCcH
Confidence            4667777777775332222   12345667777777777642111111 2456677777777776532222222334455


Q ss_pred             CEEEccCCC-CCccchhhhCCCCccEEEccCCc
Q 040119           77 EELHLSGNN-FFTLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        77 ~~L~Ls~N~-~~~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      +.|+|.+|+ +..--....-++.|+.|+|++|+
T Consensus       225 ~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~  257 (505)
T KOG3207|consen  225 EVLYLEANEIILIKATSTKILQTLQELDLSNNN  257 (505)
T ss_pred             HHhhhhcccccceecchhhhhhHHhhccccCCc
Confidence            555555552 11111122334445555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.76  E-value=1.7e-06  Score=83.91  Aligned_cols=81  Identities=26%  Similarity=0.368  Sum_probs=52.9

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC-CCCCccch-hhhCCCCccEEEc
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG-NNFFTLPA-SIYRLSKLSKIFL  104 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~-N~~~~lP~-~i~~L~~L~~L~L  104 (366)
                      -..++|..|.|+..-|.+|+.+++|+.|||+.|+|+ ..-|..|..|.+|..|.+.+ |+|+.+|. .+++|..|+.|.+
T Consensus        69 tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is-~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   69 TVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNIS-FIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             ceEEEeccCCcccCChhhccchhhhceecccccchh-hcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456677777776444456667777777777777776 44467777777766666665 66777764 4566666666666


Q ss_pred             cCCc
Q 040119          105 KDCK  108 (366)
Q Consensus       105 ~~n~  108 (366)
                      .-|+
T Consensus       148 Nan~  151 (498)
T KOG4237|consen  148 NANH  151 (498)
T ss_pred             Chhh
Confidence            5555

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.76  E-value=5.9e-05  Score=67.46  Aligned_cols=124  Identities=20%  Similarity=0.148  Sum_probs=87.0

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCC-CCCCCCEEEccC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSG   83 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~sL~~L~Ls~   83 (366)
                      +.++|.+.++...............++|+.|.+. .++. |..++.|.+|.|++|+|+.  |-+.+. -+++|..|.|.+
T Consensus        22 ~e~~LR~lkip~ienlg~~~d~~d~iDLtdNdl~-~l~~-lp~l~rL~tLll~nNrIt~--I~p~L~~~~p~l~~L~Ltn   97 (233)
T KOG1644|consen   22 RELDLRGLKIPVIENLGATLDQFDAIDLTDNDLR-KLDN-LPHLPRLHTLLLNNNRITR--IDPDLDTFLPNLKTLILTN   97 (233)
T ss_pred             cccccccccccchhhccccccccceecccccchh-hccc-CCCccccceEEecCCccee--eccchhhhccccceEEecC
Confidence            3566666664444333344455778999999985 5554 8889999999999999984  554544 456799999999


Q ss_pred             CCCCccc--hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           84 NNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        84 N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |+|..+-  .-+..+++|++|.+-+|+....     ..-+.-.+.-.++|+.|++.
T Consensus        98 Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k-----~~YR~yvl~klp~l~~LDF~  148 (233)
T KOG1644|consen   98 NSIQELGDLDPLASCPKLEYLTLLGNPVEHK-----KNYRLYVLYKLPSLRTLDFQ  148 (233)
T ss_pred             cchhhhhhcchhccCCccceeeecCCchhcc-----cCceeEEEEecCcceEeehh
Confidence            9998664  2467788999999988875421     12333334466788888776

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.73  E-value=8.5e-05  Score=73.78  Aligned_cols=117  Identities=24%  Similarity=0.368  Sum_probs=78.9

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC-CCCccchhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN-NFFTLPASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N-~~~~lP~~i~~L~~L~~L~  103 (366)
                      ..+..|+++.|.+. .+|. +  ..+|+.|.+++|.-. ..+|..+.  .+|+.|++++| ++..+|.+      |+.|+
T Consensus        52 ~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nL-tsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------Le~L~  118 (426)
T PRK15386         52 RASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNL-TTLPGSIP--EGLEKLTVCHCPEISGLPES------VRSLE  118 (426)
T ss_pred             cCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCc-ccCCchhh--hhhhheEccCcccccccccc------cceEE
Confidence            56889999999886 7773 2  346999999997665 55787653  68999999998 77788864      56666


Q ss_pred             ccCCcCccCCCCCCcccceecccCC-------------cCccEeeCCCCCCccc-ccCCCCCCcccccCC
Q 040119          104 LKDCKMLQNLPRLPASIHGIFLDGC-------------VSLETLSDGYWRDCSI-VVPGSEIPEWFEYQN  159 (366)
Q Consensus       104 L~~n~~l~~lp~lp~~L~~L~~~~c-------------~sL~~l~~~~f~~~~~-~l~g~~iP~~f~~~~  159 (366)
                      +.++. ...++.+|++|+.|.+.+.             ++|+.|.+.   +|.. .+|+ .+|+.+.++.
T Consensus       119 L~~n~-~~~L~~LPssLk~L~I~~~n~~~~~~lp~~LPsSLk~L~Is---~c~~i~LP~-~LP~SLk~L~  183 (426)
T PRK15386        119 IKGSA-TDSIKNVPNGLTSLSINSYNPENQARIDNLISPSLKTLSLT---GCSNIILPE-KLPESLQSIT  183 (426)
T ss_pred             eCCCC-CcccccCcchHhheeccccccccccccccccCCcccEEEec---CCCcccCcc-cccccCcEEE
Confidence            76554 3347788888888776321             356666654   3432 2343 3676555444

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.66  E-value=1.7e-05  Score=79.53  Aligned_cols=102  Identities=24%  Similarity=0.231  Sum_probs=47.8

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|.+|++.........+.+|+.|++++|.|. .+.. +..++.|+.|++++|.|..   ...+..+.+|+.+++
T Consensus        95 ~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~-~i~~-l~~l~~L~~L~l~~N~i~~---~~~~~~l~~L~~l~l  169 (414)
T KOG0531|consen   95 KSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKIT-KLEG-LSTLTLLKELNLSGNLISD---ISGLESLKSLKLLDL  169 (414)
T ss_pred             cceeeeeccccchhhcccchhhhhcchheeccccccc-cccc-hhhccchhhheeccCcchh---ccCCccchhhhcccC
Confidence            3455555555543332222333444555555555554 3322 4444445555555555542   223333555555555


Q ss_pred             cCCCCCccchh-hhCCCCccEEEccCCc
Q 040119           82 SGNNFFTLPAS-IYRLSKLSKIFLKDCK  108 (366)
Q Consensus        82 s~N~~~~lP~~-i~~L~~L~~L~L~~n~  108 (366)
                      ++|.++.+... +..+.+|+.+++.+|.
T Consensus       170 ~~n~i~~ie~~~~~~~~~l~~l~l~~n~  197 (414)
T KOG0531|consen  170 SYNRIVDIENDELSELISLEELDLGGNS  197 (414)
T ss_pred             CcchhhhhhhhhhhhccchHHHhccCCc
Confidence            55555544432 3445555555555554

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.65  E-value=1.4e-05  Score=77.81  Aligned_cols=86  Identities=19%  Similarity=0.168  Sum_probs=43.2

Q ss_pred             CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCcc-chhhhCCCCcc
Q 040119           22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLS  100 (366)
Q Consensus        22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~l-P~~i~~L~~L~  100 (366)
                      ..+++|+.|+|++|.+++.-+.+|.++..|+.|.|..|+|.. .-...|..++.|+.|+|.+|+|+.+ |.++..+..|.
T Consensus       271 ~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~-v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~  349 (498)
T KOG4237|consen  271 KKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEF-VSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLS  349 (498)
T ss_pred             hhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHH-HHHHhhhccccceeeeecCCeeEEEecccccccceee
Confidence            344455555555555555445555555555555555555531 1123344555555555555555532 44455555555


Q ss_pred             EEEccCCc
Q 040119          101 KIFLKDCK  108 (366)
Q Consensus       101 ~L~L~~n~  108 (366)
                      .|+|-.|.
T Consensus       350 ~l~l~~Np  357 (498)
T KOG4237|consen  350 TLNLLSNP  357 (498)
T ss_pred             eeehccCc
Confidence            55554444

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=97.63  E-value=2.1e-05  Score=77.32  Aligned_cols=107  Identities=21%  Similarity=0.279  Sum_probs=77.5

Q ss_pred             CCCccEEEeeCCCCCCCCC--CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSA--SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL   76 (366)
                      ++.|+.|.|+.|.+....-  ....+++|+.|+|..|.....--.+...++.|+.|||++|++.+  .+  ..++.++.|
T Consensus       196 l~~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~--~~~~~~~~~l~~L  273 (505)
T KOG3207|consen  196 LSHLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID--FDQGYKVGTLPGL  273 (505)
T ss_pred             hhhhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc--cccccccccccch
Confidence            4678899999998553211  22355788899999885333333345567889999999998864  55  567888899


Q ss_pred             CEEEccCCCCCc--cchh-----hhCCCCccEEEccCCcC
Q 040119           77 EELHLSGNNFFT--LPAS-----IYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        77 ~~L~Ls~N~~~~--lP~~-----i~~L~~L~~L~L~~n~~  109 (366)
                      ..|+++.+.+.+  +|..     ...+.+|++|++..|++
T Consensus       274 ~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I  313 (505)
T KOG3207|consen  274 NQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNI  313 (505)
T ss_pred             hhhhccccCcchhcCCCccchhhhcccccceeeecccCcc
Confidence            999999988884  3543     45678899999999885

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=97.51  E-value=2.8e-05  Score=78.03  Aligned_cols=104  Identities=23%  Similarity=0.311  Sum_probs=72.0

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ..++.+++..|.+.........+.+|+.|++..|.+. .+...+..+++|+.|+|++|.|..  + ..+..++.|+.|++
T Consensus        72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~-~i~~~l~~~~~L~~L~ls~N~I~~--i-~~l~~l~~L~~L~l  147 (414)
T KOG0531|consen   72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIE-KIENLLSSLVNLQVLDLSFNKITK--L-EGLSTLTLLKELNL  147 (414)
T ss_pred             HhHHhhccchhhhhhhhcccccccceeeeeccccchh-hcccchhhhhcchheecccccccc--c-cchhhccchhhhee
Confidence            3455566666654432333445567888888888886 444436778888888888888863  3 34556677888888


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      ++|.|+.++ .+..+..|+.+++++|.+.
T Consensus       148 ~~N~i~~~~-~~~~l~~L~~l~l~~n~i~  175 (414)
T KOG0531|consen  148 SGNLISDIS-GLESLKSLKLLDLSYNRIV  175 (414)
T ss_pred             ccCcchhcc-CCccchhhhcccCCcchhh
Confidence            888888766 3455788888888888744

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.42  E-value=5.4e-06  Score=85.85  Aligned_cols=82  Identities=27%  Similarity=0.293  Sum_probs=44.2

Q ss_pred             CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119           23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI  102 (366)
Q Consensus        23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L  102 (366)
                      .++.|+.|+|++|++. .+- .+..|+.|+.|||++|.+..  +|.--..-..|..|.|++|.++++- .|.+|.+|+.|
T Consensus       185 ll~ale~LnLshNk~~-~v~-~Lr~l~~LkhLDlsyN~L~~--vp~l~~~gc~L~~L~lrnN~l~tL~-gie~LksL~~L  259 (1096)
T KOG1859|consen  185 LLPALESLNLSHNKFT-KVD-NLRRLPKLKHLDLSYNCLRH--VPQLSMVGCKLQLLNLRNNALTTLR-GIENLKSLYGL  259 (1096)
T ss_pred             HHHHhhhhccchhhhh-hhH-HHHhcccccccccccchhcc--ccccchhhhhheeeeecccHHHhhh-hHHhhhhhhcc
Confidence            3344566666666664 332 45566666666666666643  4432111122566666666665554 45566666666


Q ss_pred             EccCCcC
Q 040119          103 FLKDCKM  109 (366)
Q Consensus       103 ~L~~n~~  109 (366)
                      ||++|-+
T Consensus       260 DlsyNll  266 (1096)
T KOG1859|consen  260 DLSYNLL  266 (1096)
T ss_pred             chhHhhh
Confidence            6666543

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.40  E-value=1.1e-05  Score=68.06  Aligned_cols=104  Identities=15%  Similarity=0.169  Sum_probs=82.5

Q ss_pred             CccEEEeeCCCCC-CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGS-PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~-~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      .|+..+|++|.+. .|......++.++.|++.+|.+. .+|..+..++.|+.|+++.|.+..  .|.-|..|.+|-.|+.
T Consensus        54 el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl~~N~l~~--~p~vi~~L~~l~~Lds  130 (177)
T KOG4579|consen   54 ELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNLRFNPLNA--EPRVIAPLIKLDMLDS  130 (177)
T ss_pred             eEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcccccCcccc--chHHHHHHHhHHHhcC
Confidence            4677899999854 44445556677999999999998 899999999999999999999964  8988888999999999


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      .+|.+..||..+..-+.+-..++.++.+
T Consensus       131 ~~na~~eid~dl~~s~~~al~~lgnepl  158 (177)
T KOG4579|consen  131 PENARAEIDVDLFYSSLPALIKLGNEPL  158 (177)
T ss_pred             CCCccccCcHHHhccccHHHHHhcCCcc
Confidence            9999999987644333333344444443

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=97.40  E-value=4.7e-06  Score=86.28  Aligned_cols=103  Identities=22%  Similarity=0.237  Sum_probs=80.0

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |+.|+.|||++|+...-. ....++.|+.|+|++|.+. .+|.- ...+ +|+.|+|++|.+++   -..+.+|.+|+.|
T Consensus       186 l~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~t---L~gie~LksL~~L  259 (1096)
T KOG1859|consen  186 LPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTT---LRGIENLKSLYGL  259 (1096)
T ss_pred             HHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHh---hhhHHhhhhhhcc
Confidence            467899999999955433 4566788999999999997 67652 2233 49999999999873   3568899999999


Q ss_pred             EccCCCCCccc--hhhhCCCCccEEEccCCcC
Q 040119           80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~  109 (366)
                      ||+.|-+...-  .-++.|..|+.|+|.+|++
T Consensus       260 DlsyNll~~hseL~pLwsLs~L~~L~LeGNPl  291 (1096)
T KOG1859|consen  260 DLSYNLLSEHSELEPLWSLSSLIVLWLEGNPL  291 (1096)
T ss_pred             chhHhhhhcchhhhHHHHHHHHHHHhhcCCcc
Confidence            99999877332  2466788899999999984

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.19  E-value=0.00058  Score=61.19  Aligned_cols=103  Identities=14%  Similarity=0.079  Sum_probs=76.9

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +...+||++|.+ .....+..+..|.+|.++.|.|...-|.--.-+++|+.|.|.+|+|.+-.--..+..++.|++|.+-
T Consensus        43 ~~d~iDLtdNdl-~~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll  121 (233)
T KOG1644|consen   43 QFDAIDLTDNDL-RKLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLL  121 (233)
T ss_pred             ccceecccccch-hhcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeec
Confidence            456788988873 3344556777899999999999855555334577899999999999751112446678899999999


Q ss_pred             CCCCCccch----hhhCCCCccEEEccC
Q 040119           83 GNNFFTLPA----SIYRLSKLSKIFLKD  106 (366)
Q Consensus        83 ~N~~~~lP~----~i~~L~~L~~L~L~~  106 (366)
                      +|..+..+.    -|..+++|+.||+..
T Consensus       122 ~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  122 GNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             CCchhcccCceeEEEEecCcceEeehhh
Confidence            999986653    367788888888765

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.18  E-value=0.00013  Score=77.53  Aligned_cols=106  Identities=20%  Similarity=0.231  Sum_probs=76.1

Q ss_pred             CCccEEEeeCCCCCC---CCCCcCCCCCccEEECcCCCCCC-CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCC
Q 040119            2 KNLKELSFRGCKGSP---SSASWFLPFPINLMRWSSDPMAL-SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLE   77 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~---~~~~~~~~~~L~~L~ls~n~l~~-~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~   77 (366)
                      .+|++|+++|.....   +......+|+|+.|.+.+-.+.. .+-.-..++++|..||+|+++++.  + ..+++|++|+
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~n--l-~GIS~LknLq  198 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISN--L-SGISRLKNLQ  198 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccC--c-HHHhccccHH
Confidence            478899998866221   12234566888888887765532 222334678889999999999863  4 7888999999


Q ss_pred             EEEccCCCCCccc--hhhhCCCCccEEEccCCcCc
Q 040119           78 ELHLSGNNFFTLP--ASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        78 ~L~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l  110 (366)
                      .|.+.+=.|..-.  ..+.+|++|+.||++.-+..
T Consensus       199 ~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~  233 (699)
T KOG3665|consen  199 VLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNN  233 (699)
T ss_pred             HHhccCCCCCchhhHHHHhcccCCCeeeccccccc
Confidence            9988887777543  36788999999999876644

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=97.12  E-value=0.00026  Score=65.54  Aligned_cols=83  Identities=23%  Similarity=0.334  Sum_probs=56.7

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC--CCCCCCCCccCCCCCCCCEEEccCCCCCccc--hhhhCCCCcc
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC--DLGEGAIPSGIGNLCSLEELHLSGNNFFTLP--ASIYRLSKLS  100 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n--~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP--~~i~~L~~L~  100 (366)
                      ..|+.|.+.+..++ .+ ..+..|++|+.|.++.|  ++. +.++.....+++|++|+|++|+|+.+-  ..+..+.+|.
T Consensus        43 ~~le~ls~~n~glt-t~-~~~P~Lp~LkkL~lsdn~~~~~-~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   43 VELELLSVINVGLT-TL-TNFPKLPKLKKLELSDNYRRVS-GGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLK  119 (260)
T ss_pred             cchhhhhhhcccee-ec-ccCCCcchhhhhcccCCccccc-ccceehhhhCCceeEEeecCCccccccccchhhhhcchh
Confidence            44666665555554 22 23567788899999998  666 556655566688999999999887421  1456777788


Q ss_pred             EEEccCCcCc
Q 040119          101 KIFLKDCKML  110 (366)
Q Consensus       101 ~L~L~~n~~l  110 (366)
                      .|++.+|.-.
T Consensus       120 ~Ldl~n~~~~  129 (260)
T KOG2739|consen  120 SLDLFNCSVT  129 (260)
T ss_pred             hhhcccCCcc
Confidence            8888888744

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=96.78  E-value=0.00086  Score=71.40  Aligned_cols=109  Identities=17%  Similarity=0.073  Sum_probs=81.5

Q ss_pred             CCCccEEEeeCCCCCCC--CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPS--SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~--~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      ||+|+.|.+.|=.....  ......+++|..||+|+++++ .+ ..+++|++|+.|.+.+=.+.....-..+.+|++|+.
T Consensus       147 LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~-nl-~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L~~L~v  224 (699)
T KOG3665|consen  147 LPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNIS-NL-SGISRLKNLQVLSMRNLEFESYQDLIDLFNLKKLRV  224 (699)
T ss_pred             CcccceEEecCceecchhHHHHhhccCccceeecCCCCcc-Cc-HHHhccccHHHHhccCCCCCchhhHHHHhcccCCCe
Confidence            68999999988553322  123346688999999999997 55 669999999999988866643222346789999999


Q ss_pred             EEccCCCCCccch-------hhhCCCCccEEEccCCcCcc
Q 040119           79 LHLSGNNFFTLPA-------SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        79 L~Ls~N~~~~lP~-------~i~~L~~L~~L~L~~n~~l~  111 (366)
                      ||+|.......+.       +-..|++|+.||.++..+.+
T Consensus       225 LDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  225 LDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             eeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            9999887664442       23458999999999876543

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.69  E-value=0.0004  Score=66.72  Aligned_cols=86  Identities=23%  Similarity=0.328  Sum_probs=42.5

Q ss_pred             CCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCCC---CCcc-CCCCCCCCEEEccCCCCC-----ccc
Q 040119           24 PFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEGA---IPSG-IGNLCSLEELHLSGNNFF-----TLP   90 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~~---lP~~-i~~L~sL~~L~Ls~N~~~-----~lP   90 (366)
                      +++|++|+|..|.++.    .+-..+..+++|+.|++++|.+..+-   +-.. -...++|+.|.|.+|.|+     .+-
T Consensus       212 ~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la  291 (382)
T KOG1909|consen  212 CPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALA  291 (382)
T ss_pred             CCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHH
Confidence            4556666666665542    12233445555666666666554210   0011 112455666666666655     233


Q ss_pred             hhhhCCCCccEEEccCCcC
Q 040119           91 ASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        91 ~~i~~L~~L~~L~L~~n~~  109 (366)
                      .++...+.|..|+|++|.+
T Consensus       292 ~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  292 ACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             HHHhcchhhHHhcCCcccc
Confidence            4455555666666666653

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.45  E-value=0.0019  Score=59.94  Aligned_cols=102  Identities=17%  Similarity=0.067  Sum_probs=69.0

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCC--CCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC---CCCCCCC
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSD--PMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI---GNLCSLE   77 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n--~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i---~~L~sL~   77 (366)
                      .|+.|++.++. ..+...+..+++|+.|.++.|  .+.+.++.....+++|++|+|++|++.   ++.++   ..+.+|.
T Consensus        44 ~le~ls~~n~g-ltt~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~---~lstl~pl~~l~nL~  119 (260)
T KOG2739|consen   44 ELELLSVINVG-LTTLTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK---DLSTLRPLKELENLK  119 (260)
T ss_pred             chhhhhhhccc-eeecccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc---cccccchhhhhcchh
Confidence            45555555554 223334456678999999999  666677776777899999999999997   35444   4566777


Q ss_pred             EEEccCCCCCccc----hhhhCCCCccEEEccCCc
Q 040119           78 ELHLSGNNFFTLP----ASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        78 ~L~Ls~N~~~~lP----~~i~~L~~L~~L~L~~n~  108 (366)
                      .|++..|..+.+-    .-+.-+++|++|+-....
T Consensus       120 ~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD~~dv~  154 (260)
T KOG2739|consen  120 SLDLFNCSVTNLDDYREKVFLLLPSLKYLDGCDVD  154 (260)
T ss_pred             hhhcccCCccccccHHHHHHHHhhhhccccccccC
Confidence            8888888766442    123445667666655443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.36  E-value=0.0057  Score=58.07  Aligned_cols=59  Identities=19%  Similarity=0.150  Sum_probs=29.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCc-CCCCCccEEECcCCCCCC-CCCccCCCCCCCcEEEeecC
Q 040119            1 MKNLKELSFRGCKGSPSSASW-FLPFPINLMRWSSDPMAL-SLPSSLSGLCSLTKLDISYC   59 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~-~~~~~L~~L~ls~n~l~~-~lP~sl~~L~~L~~L~Ls~n   59 (366)
                      ||.|++|+|+.|+...++... ....+|++|-|.+..+.. .+-+.+..++.++.|.++.|
T Consensus        96 lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N  156 (418)
T KOG2982|consen   96 LPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVTELHMSDN  156 (418)
T ss_pred             CccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhhhhhhccc
Confidence            456666666666644443333 223345555555554432 23333455555555555555

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=96.25  E-value=0.0024  Score=61.47  Aligned_cols=109  Identities=15%  Similarity=0.137  Sum_probs=67.5

Q ss_pred             CCccEEEeeCCCCCCCC-CC----cCCCCCccEEECcCCCCCCC-------------CCccCCCCCCCcEEEeecCCCCC
Q 040119            2 KNLKELSFRGCKGSPSS-AS----WFLPFPINLMRWSSDPMALS-------------LPSSLSGLCSLTKLDISYCDLGE   63 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~-~~----~~~~~~L~~L~ls~n~l~~~-------------lP~sl~~L~~L~~L~Ls~n~l~~   63 (366)
                      +.|++|+||.|-+.... +.    ......|+.|.|.+|.+...             .-..+..-+.|+++....|.+-.
T Consensus        92 ~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen  171 (382)
T KOG1909|consen   92 PKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN  171 (382)
T ss_pred             CceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc
Confidence            46778888887632211 11    12245577788887776521             11123445668888888887742


Q ss_pred             CC---CCccCCCCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCc
Q 040119           64 GA---IPSGIGNLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        64 ~~---lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +.   +-..|...+.|+.+.+..|.|.     -+-..+..+++|+.|||.+|.+.
T Consensus       172 ~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft  226 (382)
T KOG1909|consen  172 GGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFT  226 (382)
T ss_pred             ccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhh
Confidence            11   1234556677888888888776     23456788888888888888754

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=96.01  E-value=0.0024  Score=36.43  Aligned_cols=20  Identities=50%  Similarity=0.735  Sum_probs=11.5

Q ss_pred             CCEEEccCCCCCccchhhhC
Q 040119           76 LEELHLSGNNFFTLPASIYR   95 (366)
Q Consensus        76 L~~L~Ls~N~~~~lP~~i~~   95 (366)
                      |++|+|++|+|+.+|.+|++
T Consensus         2 L~~Ldls~n~l~~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLTSIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEESEEGTTTTT
T ss_pred             ccEEECCCCcCEeCChhhcC
Confidence            55666666666666655443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.35  E-value=0.0009  Score=63.36  Aligned_cols=109  Identities=26%  Similarity=0.322  Sum_probs=50.0

Q ss_pred             CCCCCCcEEEeecCCCCCCCCCccCCCC-CCCCEEEccCCC--CC--ccchhhhCCCCccEEEccCCcCccCCCCCCccc
Q 040119           46 SGLCSLTKLDISYCDLGEGAIPSGIGNL-CSLEELHLSGNN--FF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI  120 (366)
Q Consensus        46 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L-~sL~~L~Ls~N~--~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L  120 (366)
                      .+++.|..|+|+.|-+....+-..+.+. .+|+.|+|+|..  +.  .+..-...+++|..|||++|..+..  ..... 
T Consensus       257 ~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~--~~~~~-  333 (419)
T KOG2120|consen  257 SSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKN--DCFQE-  333 (419)
T ss_pred             HhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCc--hHHHH-
Confidence            4455555555555555421111111111 245555555541  11  2222334566666666666654421  11111 


Q ss_pred             ceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEEC
Q 040119          121 HGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITIST  169 (366)
Q Consensus       121 ~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L  169 (366)
                          +...+.|++++++   .|  +   .-+|+-|-+...+++++++++
T Consensus       334 ----~~kf~~L~~lSls---RC--Y---~i~p~~~~~l~s~psl~yLdv  370 (419)
T KOG2120|consen  334 ----FFKFNYLQHLSLS---RC--Y---DIIPETLLELNSKPSLVYLDV  370 (419)
T ss_pred             ----HHhcchheeeehh---hh--c---CCChHHeeeeccCcceEEEEe
Confidence                1133455555554   12  1   135666665554778888863

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.02  E-value=0.0082  Score=57.00  Aligned_cols=81  Identities=21%  Similarity=0.297  Sum_probs=46.8

Q ss_pred             CccEEECcCCCCCC--CCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCEEEccCCCCC--ccchhhhCCCCcc
Q 040119           26 PINLMRWSSDPMAL--SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFF--TLPASIYRLSKLS  100 (366)
Q Consensus        26 ~L~~L~ls~n~l~~--~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~L~Ls~N~~~--~lP~~i~~L~~L~  100 (366)
                      .++.++|.+|.++.  ++-.-+.+|+.|++|+|+.|.+.. .| ..+ -.+.+|+.|.|.|..+.  ..-..+.++++++
T Consensus        72 ~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s-~I-~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt  149 (418)
T KOG2982|consen   72 DVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSS-DI-KSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT  149 (418)
T ss_pred             hhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCC-cc-ccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence            35666676666653  333334566777777777776641 11 111 24456667777666554  4445566666666


Q ss_pred             EEEccCCc
Q 040119          101 KIFLKDCK  108 (366)
Q Consensus       101 ~L~L~~n~  108 (366)
                      .|.++.|.
T Consensus       150 elHmS~N~  157 (418)
T KOG2982|consen  150 ELHMSDNS  157 (418)
T ss_pred             hhhhccch
Confidence            66666664

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=95.01  E-value=0.0013  Score=62.29  Aligned_cols=109  Identities=17%  Similarity=0.134  Sum_probs=69.2

Q ss_pred             CCccEEEeeCCCCCCCCCC---cCCCCCccEEECcCCCCCCCCCccC-C-CCCCCcEEEeecCCCC--CCCCCccCCCCC
Q 040119            2 KNLKELSFRGCKGSPSSAS---WFLPFPINLMRWSSDPMALSLPSSL-S-GLCSLTKLDISYCDLG--EGAIPSGIGNLC   74 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~---~~~~~~L~~L~ls~n~l~~~lP~sl-~-~L~~L~~L~Ls~n~l~--~~~lP~~i~~L~   74 (366)
                      .+|+.|+|++|........   +..+..|..|+++.+.+..+.-..+ . --.+|+.|+|+|+.--  ...+..-....+
T Consensus       234 ~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp  313 (419)
T KOG2120|consen  234 SNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCP  313 (419)
T ss_pred             ccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCC
Confidence            3677888888874433222   2234558888888887654321111 1 1346889999998532  111222234678


Q ss_pred             CCCEEEccCCCC-C-ccchhhhCCCCccEEEccCCcCc
Q 040119           75 SLEELHLSGNNF-F-TLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        75 sL~~L~Ls~N~~-~-~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +|.+|||+.|.- + ..-..|.++..|++|.|+.|..+
T Consensus       314 ~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i  351 (419)
T KOG2120|consen  314 NLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDI  351 (419)
T ss_pred             ceeeeccccccccCchHHHHHHhcchheeeehhhhcCC
Confidence            899999998753 3 33456788999999999999843

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=94.81  E-value=0.11  Score=42.52  Aligned_cols=76  Identities=16%  Similarity=0.219  Sum_probs=29.4

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKI  102 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L  102 (366)
                      ..|+.+.+.. .+...-...|.++.+|+.+.+..+ +.  .++ ..|..+.+|+.+.+.. .+..++. .+.++++|+.+
T Consensus        12 ~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~--~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i   86 (129)
T PF13306_consen   12 SNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LT--SIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNI   86 (129)
T ss_dssp             TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TS--CE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEE
T ss_pred             CCCCEEEECC-CeeEeChhhccccccccccccccc-cc--ccceeeeecccccccccccc-ccccccccccccccccccc
Confidence            3455555442 233222233455555666665553 32  132 3344554566666643 4444433 33445566665


Q ss_pred             Ecc
Q 040119          103 FLK  105 (366)
Q Consensus       103 ~L~  105 (366)
                      .+.
T Consensus        87 ~~~   89 (129)
T PF13306_consen   87 DIP   89 (129)
T ss_dssp             EET
T ss_pred             ccC
Confidence            554

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.60  E-value=0.01  Score=33.73  Aligned_cols=21  Identities=43%  Similarity=0.561  Sum_probs=13.4

Q ss_pred             CCcEEEeecCCCCCCCCCccCCC
Q 040119           50 SLTKLDISYCDLGEGAIPSGIGN   72 (366)
Q Consensus        50 ~L~~L~Ls~n~l~~~~lP~~i~~   72 (366)
                      +|+.|+|++|++++  +|..|++
T Consensus         1 ~L~~Ldls~n~l~~--ip~~~~~   21 (22)
T PF00560_consen    1 NLEYLDLSGNNLTS--IPSSFSN   21 (22)
T ss_dssp             TESEEEETSSEESE--EGTTTTT
T ss_pred             CccEEECCCCcCEe--CChhhcC
Confidence            46677777777753  6666554

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.54  E-value=0.001  Score=62.39  Aligned_cols=62  Identities=19%  Similarity=0.217  Sum_probs=38.6

Q ss_pred             CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc--hhhhCCCCccEEEccCCcCc
Q 040119           46 SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP--ASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        46 ~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l  110 (366)
                      ..++.|+.|.|+-|+|+.   -..+..+++|++|+|..|.|..+-  ..+.+|++|+.|+|..|+--
T Consensus        38 ~kMp~lEVLsLSvNkIss---L~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~LWL~ENPCc  101 (388)
T KOG2123|consen   38 EKMPLLEVLSLSVNKISS---LAPLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTLWLDENPCC  101 (388)
T ss_pred             HhcccceeEEeecccccc---chhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhHhhccCCcc
Confidence            456666666666666652   233555666777777777666554  35667777777777666543

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.31  E-value=0.0022  Score=60.25  Aligned_cols=97  Identities=22%  Similarity=0.208  Sum_probs=67.2

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL~~L   79 (366)
                      .+.++|++-||.+. .+......+.|++|.|+-|.|+ .+-+ +..+++|+.|+|..|.|.+  +-  .-+.+|++|+.|
T Consensus        19 ~~vkKLNcwg~~L~-DIsic~kMp~lEVLsLSvNkIs-sL~p-l~rCtrLkElYLRkN~I~s--ldEL~YLknlpsLr~L   93 (388)
T KOG2123|consen   19 ENVKKLNCWGCGLD-DISICEKMPLLEVLSLSVNKIS-SLAP-LQRCTRLKELYLRKNCIES--LDELEYLKNLPSLRTL   93 (388)
T ss_pred             HHhhhhcccCCCcc-HHHHHHhcccceeEEeeccccc-cchh-HHHHHHHHHHHHHhccccc--HHHHHHHhcCchhhhH
Confidence            35677888777632 2233345577999999999997 4544 7889999999999998853  43  346788899999


Q ss_pred             EccCCCCC-ccc-----hhhhCCCCccEEE
Q 040119           80 HLSGNNFF-TLP-----ASIYRLSKLSKIF  103 (366)
Q Consensus        80 ~Ls~N~~~-~lP-----~~i~~L~~L~~L~  103 (366)
                      +|..|.-. .-+     .-+.-|++|+.||
T Consensus        94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             hhccCCcccccchhHHHHHHHHcccchhcc
Confidence            99888655 112     1345566666655

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=94.15  E-value=0.033  Score=29.62  Aligned_cols=16  Identities=44%  Similarity=0.692  Sum_probs=5.4

Q ss_pred             CCCEEEccCCCCCccc
Q 040119           75 SLEELHLSGNNFFTLP   90 (366)
Q Consensus        75 sL~~L~Ls~N~~~~lP   90 (366)
                      +|+.|+|++|+|+++|
T Consensus         2 ~L~~L~l~~n~L~~lP   17 (17)
T PF13504_consen    2 NLRTLDLSNNRLTSLP   17 (17)
T ss_dssp             T-SEEEETSS--SSE-
T ss_pred             ccCEEECCCCCCCCCc
Confidence            3444444444444443

...

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=93.71  E-value=0.0012  Score=60.60  Aligned_cols=86  Identities=19%  Similarity=0.140  Sum_probs=73.9

Q ss_pred             CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccE
Q 040119           22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK  101 (366)
Q Consensus        22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~  101 (366)
                      ......+.|+++.|.+. .+-..++.++.|..|+|+.|.+  ..+|.+++.+..+..+++..|+.+.+|.+.+.++.+++
T Consensus        39 ~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~--~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k~  115 (326)
T KOG0473|consen   39 ASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQI--KFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPKK  115 (326)
T ss_pred             hccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhH--hhChhhHHHHHHHHHHHhhccchhhCCccccccCCcch
Confidence            34455778999999886 6666788888999999999998  55999999999999999999999999999999999999


Q ss_pred             EEccCCcCc
Q 040119          102 IFLKDCKML  110 (366)
Q Consensus       102 L~L~~n~~l  110 (366)
                      +++..+.+.
T Consensus       116 ~e~k~~~~~  124 (326)
T KOG0473|consen  116 NEQKKTEFF  124 (326)
T ss_pred             hhhccCcch
Confidence            999988754

>smart00370 LRR Leucine-rich repeats, outliers

Probab=92.88  E-value=0.099  Score=30.69  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=14.6

Q ss_pred             CCCCCEEEccCCCCCccchhh
Q 040119           73 LCSLEELHLSGNNFFTLPASI   93 (366)
Q Consensus        73 L~sL~~L~Ls~N~~~~lP~~i   93 (366)
                      |++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777777654

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=92.88  E-value=0.099  Score=30.69  Aligned_cols=21  Identities=43%  Similarity=0.596  Sum_probs=14.6

Q ss_pred             CCCCCEEEccCCCCCccchhh
Q 040119           73 LCSLEELHLSGNNFFTLPASI   93 (366)
Q Consensus        73 L~sL~~L~Ls~N~~~~lP~~i   93 (366)
                      |++|+.|+|++|.|+.+|...
T Consensus         1 L~~L~~L~L~~N~l~~lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSSLPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCcCCHHH
Confidence            456777777777777777654

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=90.72  E-value=0.15  Score=27.08  Aligned_cols=14  Identities=36%  Similarity=0.354  Sum_probs=8.0

Q ss_pred             CCCcEEEeecCCCC
Q 040119           49 CSLTKLDISYCDLG   62 (366)
Q Consensus        49 ~~L~~L~Ls~n~l~   62 (366)
                      ++|+.|+|++|++.
T Consensus         1 ~~L~~L~l~~n~L~   14 (17)
T PF13504_consen    1 PNLRTLDLSNNRLT   14 (17)
T ss_dssp             TT-SEEEETSS--S
T ss_pred             CccCEEECCCCCCC
Confidence            36778888888774

...

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=90.36  E-value=0.39  Score=45.37  Aligned_cols=38  Identities=16%  Similarity=0.235  Sum_probs=17.2

Q ss_pred             CCCccEEECcCCCCCCCCCcc----CCCCCCCcEEEeecCCC
Q 040119           24 PFPINLMRWSSDPMALSLPSS----LSGLCSLTKLDISYCDL   61 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~~lP~s----l~~L~~L~~L~Ls~n~l   61 (366)
                      ++.|+..+||.|.+....|..    +++-+.|..|.|++|.+
T Consensus        91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGl  132 (388)
T COG5238          91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGL  132 (388)
T ss_pred             CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCC
Confidence            344555555555544333332    23334455555555544

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=89.91  E-value=0.044  Score=54.97  Aligned_cols=128  Identities=25%  Similarity=0.269  Sum_probs=72.0

Q ss_pred             CCccEEEeeCCCCCCC---CCCcCCCCCccEEECcCC-CCCCC----CCccCCCCCCCcEEEeecCC-CCCCCCCccCC-
Q 040119            2 KNLKELSFRGCKGSPS---SASWFLPFPINLMRWSSD-PMALS----LPSSLSGLCSLTKLDISYCD-LGEGAIPSGIG-   71 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~---~~~~~~~~~L~~L~ls~n-~l~~~----lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~-   71 (366)
                      ++|+.|.+.+|.....   .+.....+.|+.|+++.+ .....    .......+.+|+.|+|+.+. +++ ..-..+. 
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd-~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTD-IGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCc-hhHHHHHh
Confidence            5677777777763332   223344566888888762 11111    11234456788888888887 442 1112222 


Q ss_pred             CCCCCCEEEccCCC-CC--ccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeC
Q 040119           72 NLCSLEELHLSGNN-FF--TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD  136 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~-~~--~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~  136 (366)
                      .+++|+.|.+.++. ++  .+-.-...++.|+.|+++.|.....     ..+..+ +.+|+.|+.+..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d-----~~l~~~-~~~c~~l~~l~~  328 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTD-----SGLEAL-LKNCPNLRELKL  328 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchH-----HHHHHH-HHhCcchhhhhh
Confidence            26688888877665 44  3333445677888999888875411     123333 335665555443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=86.77  E-value=1.7  Score=35.19  Aligned_cols=116  Identities=15%  Similarity=0.243  Sum_probs=60.3

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~   80 (366)
                      ++|+.+.+...-..+....+.....|+.+.+..+ +...-...+.++++|+.+.+.+ .+.  .++ ..|..+.+|+.+.
T Consensus        12 ~~l~~i~~~~~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~--~i~~~~F~~~~~l~~i~   87 (129)
T PF13306_consen   12 SNLESITFPNTIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLK--SIGDNAFSNCTNLKNID   87 (129)
T ss_dssp             TT--EEEETST--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT---EE-TTTTTT-TTECEEE
T ss_pred             CCCCEEEECCCeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccc--ccccccccccccccccc
Confidence            4788888875444455556667778999999875 5433334577887899999976 443  244 4566799999999


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCcc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLE  132 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~  132 (366)
                      +..+ +..++. .+.+. +|+.+.+..+-  .   .    +....+.+|++|+
T Consensus        88 ~~~~-~~~i~~~~f~~~-~l~~i~~~~~~--~---~----i~~~~F~~~~~l~  129 (129)
T PF13306_consen   88 IPSN-ITEIGSSSFSNC-NLKEINIPSNI--T---K----IEENAFKNCTKLK  129 (129)
T ss_dssp             ETTT--BEEHTTTTTT--T--EEE-TTB---S---S--------GGG------
T ss_pred             cCcc-ccEEchhhhcCC-CceEEEECCCc--c---E----ECCccccccccCC
Confidence            9875 777764 56665 89988876521  1   2    2233345787764

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.43  E-value=0.021  Score=52.53  Aligned_cols=82  Identities=9%  Similarity=0.050  Sum_probs=68.3

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      ..+.||++.|+.......+..++.|..|+++.|.+. .+|..+..+..+..+++..|+.+.  .|.+++.++.++++++.
T Consensus        43 r~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~~--~p~s~~k~~~~k~~e~k  119 (326)
T KOG0473|consen   43 RVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHSQ--QPKSQKKEPHPKKNEQK  119 (326)
T ss_pred             eeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchhh--CCccccccCCcchhhhc
Confidence            346788888875444444555566888999999997 899999999999999999999965  99999999999999999


Q ss_pred             CCCCC
Q 040119           83 GNNFF   87 (366)
Q Consensus        83 ~N~~~   87 (366)
                      +|.|.
T Consensus       120 ~~~~~  124 (326)
T KOG0473|consen  120 KTEFF  124 (326)
T ss_pred             cCcch
Confidence            99876

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=84.23  E-value=0.13  Score=51.55  Aligned_cols=137  Identities=25%  Similarity=0.240  Sum_probs=82.0

Q ss_pred             CCCccEEEeeCC-CCCCC-----CCCcCCCCCccEEECcCCC-CCCCCCccCC-CCCCCcEEEeecCC-CCCCCCCccCC
Q 040119            1 MKNLKELSFRGC-KGSPS-----SASWFLPFPINLMRWSSDP-MALSLPSSLS-GLCSLTKLDISYCD-LGEGAIPSGIG   71 (366)
Q Consensus         1 L~~L~~L~Ls~n-~~~~~-----~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~-~L~~L~~L~Ls~n~-l~~~~lP~~i~   71 (366)
                      ++.|+.|++++| .....     .........|+.|+++.+. ++...-..+. .+++|+.|.+.+|. +++..+-....
T Consensus       213 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~  292 (482)
T KOG1947|consen  213 CPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAE  292 (482)
T ss_pred             CchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhCCCcceEccCCCCccchhHHHHHHH
Confidence            367899999984 21111     1123344668899998887 4432222232 37899999988887 55333334445


Q ss_pred             CCCCCCEEEccCCCCC---ccchhhhCCCCccEEEccCCc---CccC-----CCCCC-cccceecccCCcCccEeeCC
Q 040119           72 NLCSLEELHLSGNNFF---TLPASIYRLSKLSKIFLKDCK---MLQN-----LPRLP-ASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~---~lP~~i~~L~~L~~L~L~~n~---~l~~-----lp~lp-~~L~~L~~~~c~sL~~l~~~  137 (366)
                      .+++|+.|+|+++...   .+.....++++|+.|.+....   .+..     +.... ..+..+.+.+|+.|+.+.+.
T Consensus       293 ~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~  370 (482)
T KOG1947|consen  293 RCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLS  370 (482)
T ss_pred             hcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhh
Confidence            6788999999988654   244444556666665544333   2211     11223 25666677788888777665

>smart00370 LRR Leucine-rich repeats, outliers

Probab=83.20  E-value=0.89  Score=26.48  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=15.8

Q ss_pred             CCCCcEEEeecCCCCCCCCCccC
Q 040119           48 LCSLTKLDISYCDLGEGAIPSGI   70 (366)
Q Consensus        48 L~~L~~L~Ls~n~l~~~~lP~~i   70 (366)
                      |++|+.|+|++|+|..  +|...
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~   21 (26)
T smart00370        1 LPNLRELDLSNNQLSS--LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHH
Confidence            4678889999998864  77653

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=83.20  E-value=0.89  Score=26.48  Aligned_cols=21  Identities=38%  Similarity=0.626  Sum_probs=15.8

Q ss_pred             CCCCcEEEeecCCCCCCCCCccC
Q 040119           48 LCSLTKLDISYCDLGEGAIPSGI   70 (366)
Q Consensus        48 L~~L~~L~Ls~n~l~~~~lP~~i   70 (366)
                      |++|+.|+|++|+|..  +|...
T Consensus         1 L~~L~~L~L~~N~l~~--lp~~~   21 (26)
T smart00369        1 LPNLRELDLSNNQLSS--LPPGA   21 (26)
T ss_pred             CCCCCEEECCCCcCCc--CCHHH
Confidence            4678889999998864  77653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=82.51  E-value=0.75  Score=43.55  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=70.0

Q ss_pred             CCCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCCC---CCC-------ccCCCCCCCcEEEeecCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMAL---SLP-------SSLSGLCSLTKLDISYCDLGEGA   65 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~~---~lP-------~sl~~L~~L~~L~Ls~n~l~~~~   65 (366)
                      |..++.++||||.+.....     ....-.+|+..+++.--...   .+|       ..+-++++|+..+||+|.+. -.
T Consensus        29 ~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg-~~  107 (388)
T COG5238          29 MDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG-SE  107 (388)
T ss_pred             hcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC-cc
Confidence            3567889999998443211     11223457776666543321   222       34678899999999999996 44


Q ss_pred             CCcc----CCCCCCCCEEEccCCCCCccc-----hh---------hhCCCCccEEEccCCcC
Q 040119           66 IPSG----IGNLCSLEELHLSGNNFFTLP-----AS---------IYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        66 lP~~----i~~L~sL~~L~Ls~N~~~~lP-----~~---------i~~L~~L~~L~L~~n~~  109 (366)
                      .|+.    |.+-+.|.+|.|++|.+-.+.     .+         +.+-+.|+......|++
T Consensus       108 ~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRl  169 (388)
T COG5238         108 FPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRL  169 (388)
T ss_pred             cchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchh
Confidence            5543    566778999999999876332     11         23456788888887774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	366
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	5e-17
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-15
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	4e-14
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	1e-10
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	5e-17
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	8e-16
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-13
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-06
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	2e-13
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-12
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-10
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	5e-09
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-08
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	7e-11
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-10
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-09
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-08
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	6e-07
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-04
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	7e-11
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-10
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	4e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-09
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-06
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-10
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	8e-09
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-08
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-07
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	5e-06
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-05
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	4e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-09
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-08
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	3e-07
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	8e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	2e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-05
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-04
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-09
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	6e-08
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-07
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-06
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	8e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-04
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	9e-09
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	6e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-08
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-07
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	1e-06
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	5e-06
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-08
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	3e-07
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	5e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-08
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-07
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-05
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	4e-05
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-08
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	8e-07
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-06
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	3e-08
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-04
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-08
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	7e-07
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	6e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	8e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-05
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-08
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-07
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	1e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	7e-06
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	6e-05
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-08
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	8e-07
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	4e-04
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	4e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-08
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-07
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	1e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-05
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	2e-04
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-06
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-05
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	7e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	8e-08
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	5e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-07
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	8e-06
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	4e-07
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-05
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	5e-04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	9e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-07
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	4e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	6e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-06
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	8e-07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-06
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	1e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	3e-04
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	5e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	9e-06
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	4e-05
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	8e-05
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-07
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	7e-06
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	8e-07
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	7e-06
1o6v_A	466	Internalin A; bacterial infection, extracellular r	1e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-04
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-06
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-05
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	2e-06
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-06
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	3e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	4e-06
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-05
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-06
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-05
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	4e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-05
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	1e-04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-04
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	5e-05
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-04
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-05
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-04
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	8e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	4e-04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	8e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-04
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-05
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	1e-04
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	6e-05
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	5e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-05
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-04
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	8e-05
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-05
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	4e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-04
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-04
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	5e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	7e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-04

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 80.0 bits (198), Expect = 5e-17
 Identities = 30/116 (25%), Positives = 44/116 (37%), Gaps = 28/116 (24%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC- 59
           ++NLK L  R                  L          +L  ++  L  L +LD+  C 
Sbjct: 205 LQNLKSLKIRNSP---------------LS---------ALGPAIHHLPKLEELDLRGCT 240

Query: 60  DLGEGAIPSGIGNLCSLEELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQNLP 114
            L     P   G    L+ L L   +    LP  I+RL++L K+ L+ C  L  LP
Sbjct: 241 ALRN--YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 78.4 bits (194), Expect = 2e-16
 Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 3/97 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
             P     L  L  + I    L E  +P  +     LE L L+ N    LPASI  L++L
Sbjct: 95  QFPDQAFRLSHLQHMTIDAAGLME--LPDTMQQFAGLETLTLARNPLRALPASIASLNRL 152

Query: 100 SKIFLKDCKMLQNLPR-LPASIHGIFLDGCVSLETLS 135
            ++ ++ C  L  LP  L ++       G V+L++L 
Sbjct: 153 RELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR 189

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 76.1 bits (188), Expect = 1e-15
 Identities = 39/160 (24%), Positives = 59/160 (36%), Gaps = 43/160 (26%)

Query: 2   KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDL 61
             L+ELS R C          LP P+                   GL +L  L + +  +
Sbjct: 150 NRLRELSIRACPELTE-----LPEPLAS---------TDASGEHQGLVNLQSLRLEWTGI 195

Query: 62  GEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP------- 114
               +P+ I NL +L+ L +  +    L  +I+ L KL ++ L+ C  L+N P       
Sbjct: 196 RS--LPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 115 --------------RLPASIHG------IFLDGCVSLETL 134
                          LP  IH       + L GCV+L  L
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRL 293

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 71.1 bits (175), Expect = 4e-14
 Identities = 28/122 (22%), Positives = 42/122 (34%), Gaps = 27/122 (22%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC- 59
           +  L+EL  RGC                 +R        + P    G   L +L +  C 
Sbjct: 228 LPKLEELDLRGC---------------TALR--------NYPPIFGGRAPLKRLILKDCS 264

Query: 60  DLGEGAIPSGIGNLCSLEELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQNLPRLPA 118
           +L    +P  I  L  LE+L L G    + LP+ I +L     I +      Q     P 
Sbjct: 265 NLLT--LPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

Query: 119 SI 120
           + 
Sbjct: 323 AR 324

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 61.1 bits (149), Expect = 1e-10
 Identities = 21/141 (14%), Positives = 36/141 (25%), Gaps = 24/141 (17%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSS----DPMALSLPSSLSGLCSLTKLDI 56
               + L F+G             +   L +W      D          +   +      
Sbjct: 11  SSGRENLYFQGSTALRP-------YHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETR 63

Query: 57  SYCDLGEGAIPSGIGNLCS--LEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP 114
           +   L        + +        L L        P   +RLS L  + +        L 
Sbjct: 64  TGRALKA--TADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAG----LM 117

Query: 115 RLPASIHGIFLDGCVSLETLS 135
            LP ++          LETL+
Sbjct: 118 ELPDTMQ-----QFAGLETLT 133

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 70.8 bits (174), Expect = 2e-13
 Identities = 15/135 (11%), Positives = 37/135 (27%), Gaps = 23/135 (17%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           +  ++ ++    +                +            +       +  + I Y +
Sbjct: 272 LPEMQLINVACNR---------------GISGEQLKDDWQALADAPVGEKIQIIYIGYNN 316

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
           L    + + +  +  L  L    N       +     KL+ + L        +  +PA+ 
Sbjct: 317 LKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN----QITEIPANF 372

Query: 121 HGIFLDGCVSLETLS 135
            G        +E LS
Sbjct: 373 CG----FTEQVENLS 383

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 68.1 bits (167), Expect = 1e-12
 Identities = 16/144 (11%), Positives = 40/144 (27%), Gaps = 21/144 (14%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           +  L++           +                     +       L  LT +++  C 
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAW----ENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCP 260

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLP---------ASIYRLSKLSKIFLKDCKMLQ 111
                +P+ +  L  ++ ++++ N   +           A      K+  I++     L+
Sbjct: 261 N-LTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN-LK 318

Query: 112 NLPRLPASIHGIFLDGCVSLETLS 135
             P +  S+          L  L 
Sbjct: 319 TFP-VETSLQ-----KMKKLGMLE 336

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 60.4 bits (147), Expect = 4e-10
 Identities = 20/101 (19%), Positives = 33/101 (32%), Gaps = 12/101 (11%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI--GNLCSLEELHLSGNNFFTLPASIYRLS 97
               +      LT +D+ +  L +  +        L  L  + LS N+F   P      S
Sbjct: 479 DENENFKNTYLLTSIDLRFNKLTK--LSDDFRATTLPYLVGIDLSYNSFSKFPTQPLNSS 536

Query: 98  KLSKIFLKDCKML---QNLPRLPASIHGIFLDGCVSLETLS 135
            L    +++ +     + L   P  I       C SL  L 
Sbjct: 537 TLKGFGIRNQRDAQGNRTLREWPEGIT-----LCPSLTQLQ 572

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.7 bits (140), Expect = 3e-09
 Identities = 21/122 (17%), Positives = 40/122 (32%), Gaps = 9/122 (7%)

Query: 14  GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNL 73
           G+   A+W     +++  W + P       SL+    +T L +       G +P  IG L
Sbjct: 53  GTQPGANWNFNKELDM--WGAQP-----GVSLNSNGRVTGLSLEGFGA-SGRVPDAIGQL 104

Query: 74  CSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLET 133
             LE L L  +    +   ++    +S     + K    +      +     +    L  
Sbjct: 105 TELEVLALGSHG-EKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 134 LS 135
             
Sbjct: 164 DC 165

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 57.0 bits (138), Expect = 5e-09
 Identities = 16/93 (17%), Positives = 29/93 (31%), Gaps = 8/93 (8%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGE-----GAIPSGIGNLCSLEELHLSGNNFFTLPASIY 94
             P+      +L    I      +        P GI    SL +L +  N+   +   I 
Sbjct: 527 KFPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIRKVNEKI- 585

Query: 95  RLSKLSKIFLKDCKMLQ-NLPRLPASIHGIFLD 126
               +S + +KD   +  +L  +   I      
Sbjct: 586 -TPNISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 16/177 (9%), Positives = 44/177 (24%), Gaps = 33/177 (18%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLM--RWSSDPMALSLPSSLSGLCSLTKLDISY 58
           +  L+ L+        +   +        M              + +         D+  
Sbjct: 104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIK 163

Query: 59  CDL----GEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK------ 108
             +     + +I           ++    NN   +  ++ RL+KL + ++ +        
Sbjct: 164 DCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENI 223

Query: 109 ----------MLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWF 155
                       Q              D    L  +      +C  +   +++P + 
Sbjct: 224 CEAWENENSEYAQQYKTEDLKW-----DNLKDLTDV---EVYNCPNL---TKLPTFL 269

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 52.4 bits (126), Expect = 1e-07
 Identities = 13/104 (12%), Positives = 33/104 (31%), Gaps = 17/104 (16%)

Query: 40  SLPSSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNN--------FFTLP 90
            +P++  G    +  L  ++  L          ++  +  +  S N         F  L 
Sbjct: 367 EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLD 426

Query: 91  ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
            + ++   +S I L +      + + P  +          L ++
Sbjct: 427 PTPFKGINVSSINLSNN----QISKFPKEL----FSTGSPLSSI 462

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 21/64 (32%), Positives = 30/64 (46%), Gaps = 2/64 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
           ++P  LS + +L  LD SY  L  G +P  I +L +L  +   GN     +P S    SK
Sbjct: 116 AIPDFLSQIKTLVTLDFSYNAL-SGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 99  LSKI 102
           L   
Sbjct: 175 LFTS 178

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 61.4 bits (150), Expect = 7e-11
 Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
            +P +++ L  L  L I++ ++  GAIP  +  + +L  L  S N    TLP SI  L  
Sbjct: 92  PIPPAIAKLTQLHYLYITHTNV-SGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPN 150

Query: 99  LSKIFL 104
           L  I  
Sbjct: 151 LVGITF 156

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 1e-10
 Identities = 24/102 (23%), Positives = 45/102 (44%), Gaps = 9/102 (8%)

Query: 7   LSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDL-GEG 64
           L  +   G+P++ +SW          W        L  + +    +  LD+S  +L    
Sbjct: 12  LQIKKDLGNPTTLSSWLPTTDCCNRTWLG-----VLCDTDTQTYRVNNLDLSGLNLPKPY 66

Query: 65  AIPSGIGNLCSLEELHLSGNNFFT--LPASIYRLSKLSKIFL 104
            IPS + NL  L  L++ G N     +P +I +L++L  +++
Sbjct: 67  PIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYI 108

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 57.9 bits (141), Expect = 1e-09
 Identities = 21/86 (24%), Positives = 35/86 (40%), Gaps = 8/86 (9%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLS 97
             +PSSL+ L  L  L I   +   G IP  I  L  L  L+++  N    +P  + ++ 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 98  KLSKIFLKDCKM-------LQNLPRL 116
            L  +      +       + +LP L
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNL 151

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 54.8 bits (133), Expect = 1e-08
 Identities = 15/66 (22%), Positives = 30/66 (45%), Gaps = 4/66 (6%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF-FTLPASIYRLSK 98
            +P +     +L  +D+S   L EG      G+  + +++HL+ N+  F L   +     
Sbjct: 189 KIPPTF-ANLNLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKN 245

Query: 99  LSKIFL 104
           L+ + L
Sbjct: 246 LNGLDL 251

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 49.5 bits (119), Expect = 6e-07
 Identities = 18/67 (26%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSL-EELHLSGNNFF-TLPASIYRLS 97
           +LP S+S L +L  +      +  GAIP   G+   L   + +S N     +P +   L+
Sbjct: 140 TLPPSISSLPNLVGITFDGNRI-SGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN 198

Query: 98  KLSKIFL 104
            L+ + L
Sbjct: 199 -LAFVDL 204

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 42.5 bits (101), Expect = 1e-04
 Identities = 12/44 (27%), Positives = 20/44 (45%), Gaps = 1/44 (2%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF 86
             +    +L  LD+    +  G +P G+  L  L  L++S NN 
Sbjct: 238 GKVGLSKNLNGLDLRNNRI-YGTLPQGLTQLKFLHSLNVSFNNL 280

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 41.0 bits (97), Expect = 4e-04
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 2/46 (4%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNN 85
           +LP  L+ L  L  L++S+ +L  G IP G GNL   +    + N 
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNL-CGEIPQG-GNLQRFDVSAYANNK 302

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.6 bits (152), Expect = 7e-11
 Identities = 17/120 (14%), Positives = 33/120 (27%), Gaps = 16/120 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            L         +    + Y +L E    + +  +  L  L    N    L  +     KL
Sbjct: 539 RLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKL 597

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159
           + + L        +  +P             +E L    +    +      IP  F  ++
Sbjct: 598 TDLKLDYN----QIEEIPEDF----CAFTDQVEGL---GFSHNKL----KYIPNIFNAKS 642

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 62.2 bits (151), Expect = 1e-10
 Identities = 19/100 (19%), Positives = 33/100 (33%), Gaps = 12/100 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI--GNLCSLEELHLSGNNFFTLPASIYRLS 97
               +      LT +D+ +  L    +        L  L  + +S N F + P      S
Sbjct: 719 PKDGNYKNTYLLTTIDLRFNKLTS--LSDDFRATTLPYLSNMDVSYNCFSSFPTQPLNSS 776

Query: 98  KLSKIFLKDCKMLQN---LPRLPASIHGIFLDGCVSLETL 134
           +L    ++  +  +    L + P  I       C SL  L
Sbjct: 777 QLKAFGIRHQRDAEGNRILRQWPTGIT-----TCPSLIQL 811

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 60.3 bits (146), Expect = 5e-10
 Identities = 14/122 (11%), Positives = 27/122 (22%), Gaps = 17/122 (13%)

Query: 42  PSSLSGLCSLTKLDISYCDLGE------GAIPSGIGNLCSLEELHLSGNNFFTLPASIY- 94
               +    ++ + +S   +                N   L  + L  N   +L      
Sbjct: 690 TELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRA 749

Query: 95  -RLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPE 153
             L  LS + +            P             L+     + RD        + P 
Sbjct: 750 TTLPYLSNMDVSYN----CFSSFPTQPL-----NSSQLKAFGIRHQRDAEGNRILRQWPT 800

Query: 154 WF 155
             
Sbjct: 801 GI 802

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 57.2 bits (138), Expect = 4e-09
 Identities = 21/133 (15%), Positives = 37/133 (27%), Gaps = 12/133 (9%)

Query: 3   NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLG 62
           + K   +     + +  S    F   L  W   P        L     +T L ++     
Sbjct: 282 DGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQP-----GVDLDNNGRVTGLSLAGFGA- 335

Query: 63  EGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHG 122
           +G +P  IG L  L+ L    ++                +  +         R+      
Sbjct: 336 KGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEE------RKHRIRMHYKK 389

Query: 123 IFLDGCVSLETLS 135
           +FLD    L    
Sbjct: 390 MFLDYDQRLNLSD 402

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 56.0 bits (135), Expect = 9e-09
 Identities = 17/98 (17%), Positives = 33/98 (33%), Gaps = 12/98 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGE-----GAIPSGIGNLCSLEELHLSGNNFFTLPASIY 94
           S P+       L    I +    E        P+GI    SL +L +  N+   +   + 
Sbjct: 767 SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIRKVDEKL- 825

Query: 95  RLSKLSKIFLKDCKML-----QNLPRLPASIHGIFLDG 127
              +L  + + D   +        P + A ++ +  D 
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDK 862

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 48.7 bits (116), Expect = 2e-06
 Identities = 15/139 (10%), Positives = 41/139 (29%), Gaps = 23/139 (16%)

Query: 22  FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGE-----GAIPSGIGNLCSL 76
           FL +   L        A++    +  +   +++ +    +G        I   I  L  L
Sbjct: 391 FLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKL 450

Query: 77  EELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
           + ++ + + F     ++      S          +       S           L  +  
Sbjct: 451 QIIYFANSPFTYDNIAVDWEDANS-------DYAKQYENEELSWS-----NLKDLTDV-- 496

Query: 137 GYWRDCSIVVPGSEIPEWF 155
               +C  +   +++P++ 
Sbjct: 497 -ELYNCPNM---TQLPDFL 511

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 47.6 bits (113), Expect = 5e-06
 Identities = 12/102 (11%), Positives = 28/102 (27%), Gaps = 15/102 (14%)

Query: 40  SLPSSLSGLCS-LTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASI----- 93
            +P         +  L  S+  L          ++  +  +  S N   +   +I     
Sbjct: 609 EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD 668

Query: 94  -YRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
            Y+    S + L        + + P  +          + T+
Sbjct: 669 DYKGINASTVTLSYN----EIQKFPTEL----FATGSPISTI 702

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 61.5 bits (150), Expect = 2e-10
 Identities = 23/85 (27%), Positives = 39/85 (45%), Gaps = 9/85 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
           ++PSSL  L  L  L +    L EG IP  +  + +LE L L  N+    +P+ +   + 
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNML-EGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN 491

Query: 99  LSKIFLKDCKM-------LQNLPRL 116
           L+ I L + ++       +  L  L
Sbjct: 492 LNWISLSNNRLTGEIPKWIGRLENL 516

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 60.3 bits (147), Expect = 3e-10
 Identities = 25/97 (25%), Positives = 36/97 (37%), Gaps = 12/97 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
            +P  L    +L  LDIS   L  G     I     L+ L++S N F   +P     L  
Sbjct: 215 GIPF-LGDCSALQHLDISGNKL-SGDFSRAISTCTELKLLNISSNQFVGPIPPLP--LKS 270

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + L + K       +P  + G     C +L  L 
Sbjct: 271 LQYLSLAENKF---TGEIPDFLSGA----CDTLTGLD 300

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 58.0 bits (141), Expect = 2e-09
 Identities = 23/66 (34%), Positives = 32/66 (48%), Gaps = 2/66 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
            +PS LS   +L  + +S   L  G IP  IG L +L  L LS N+F   +PA +     
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRL-TGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRS 539

Query: 99  LSKIFL 104
           L  + L
Sbjct: 540 LIWLDL 545

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 56.1 bits (136), Expect = 8e-09
 Identities = 26/68 (38%), Positives = 36/68 (52%), Gaps = 4/68 (5%)

Query: 40  SLPSSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPA-SIYRL 96
            +P  LSG C +LT LD+S      GA+P   G+   LE L LS NNF   LP  ++ ++
Sbjct: 284 EIPDFLSGACDTLTGLDLSGNHF-YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKM 342

Query: 97  SKLSKIFL 104
             L  + L
Sbjct: 343 RGLKVLDL 350

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 54.5 bits (132), Expect = 3e-08
 Identities = 23/99 (23%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF---FTLPASIYRL 96
           ++ SSL  L  L  L +S   +  G++        SL  L LS N+     T   S+   
Sbjct: 68  AVSSSLLSLTGLESLFLSNSHIN-GSVSG-FKCSASLTSLDLSRNSLSGPVTTLTSLGSC 125

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           S L  + +           L             SLE L 
Sbjct: 126 SGLKFLNVSSNT-------LDFPGKVSGGLKLNSLEVLD 157

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 21/99 (21%), Positives = 36/99 (36%), Gaps = 10/99 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFF-TLPASIYRLS 97
           ++P        L  L +S  +   G +P   +  +  L+ L LS N F   LP S+  LS
Sbjct: 309 AVPPFFGSCSLLESLALSSNNF-SGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLS 367

Query: 98  -KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             L  + L        +         +  +   +L+ L 
Sbjct: 368 ASLLTLDLSSNNFSGPILP------NLCQNPKNTLQELY 400

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 52.2 bits (126), Expect = 1e-07
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
            +P  +  L +L  L +S      G IP+ +G+  SL  L L+ N F  T+PA++++ S 
Sbjct: 505 EIPKWIGRLENLAILKLSNNSF-SGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSG 563

Query: 99  L 99
            
Sbjct: 564 K 564

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.8 bits (125), Expect = 2e-07
 Identities = 26/132 (19%), Positives = 45/132 (34%), Gaps = 23/132 (17%)

Query: 1   MKNLKELSFRGCKGS-PSSASWFLPFP----INLMRWSSDPMALSLPSSL---SGLCSLT 52
              LK L+        P   S  L       ++L   S++ ++ +         G   L 
Sbjct: 125 CSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDL---SANSISGANVVGWVLSDGCGELK 181

Query: 53  KLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIFLKDCKM-- 109
            L IS   +  G +   +    +LE L +S NNF   +P  +   S L  + +   K+  
Sbjct: 182 HLAISGNKI-SGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSG 237

Query: 110 -----LQNLPRL 116
                +     L
Sbjct: 238 DFSRAISTCTEL 249

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 51.1 bits (123), Expect = 3e-07
 Identities = 19/89 (21%), Positives = 32/89 (35%), Gaps = 11/89 (12%)

Query: 38  ALSLPSSLSGLCSLTKLDISYCDL-GEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYR 95
            ++  +SL     L  L++S   L   G +  G+  L SLE L LS N+           
Sbjct: 115 PVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL-KLNSLEVLDLSANSISGANVVGWVL 173

Query: 96  ---LSKLSKIFLKDCKM-----LQNLPRL 116
                +L  + +   K+     +     L
Sbjct: 174 SDGCGELKHLAISGNKISGDVDVSRCVNL 202

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 50.7 bits (122), Expect = 4e-07
 Identities = 21/68 (30%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 40  SLPSSL--SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRL 96
            +  +L  +   +L +L +       G IP  + N   L  LHLS N    T+P+S+  L
Sbjct: 383 PILPNLCQNPKNTLQELYLQNNGF-TGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSL 441

Query: 97  SKLSKIFL 104
           SKL  + L
Sbjct: 442 SKLRDLKL 449

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 18/62 (29%), Positives = 29/62 (46%), Gaps = 2/62 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
               +     S+  LD+SY  L  G IP  IG++  L  L+L  N+   ++P  +  L  
Sbjct: 623 HTSPTFDNNGSMMFLDMSYNML-SGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG 681

Query: 99  LS 100
           L+
Sbjct: 682 LN 683

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 47.6 bits (114), Expect = 5e-06
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 2/62 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
            +P  +  +  L  L++ + D+  G+IP  +G+L  L  L LS N     +P ++  L+ 
Sbjct: 647 YIPKEIGSMPYLFILNLGHNDI-SGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTM 705

Query: 99  LS 100
           L+
Sbjct: 706 LT 707

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 12/61 (19%), Positives = 20/61 (32%), Gaps = 2/61 (3%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSK 98
                L+ L +    +I+      G       N  S+  L +S N     +P  I  +  
Sbjct: 599 IRSEQLNRLSTRNPCNITSRVY-GGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657

Query: 99  L 99
           L
Sbjct: 658 L 658

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 11/65 (16%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNN----------FFTL 89
           S+P  +  L  L  LD+S   L +G IP  +  L  L E+ LS NN          F T 
Sbjct: 671 SIPDEVGDLRGLNILDLSSNKL-DGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETF 729

Query: 90  PASIY 94
           P + +
Sbjct: 730 PPAKF 734

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 44.5 bits (106), Expect = 4e-05
 Identities = 20/88 (22%), Positives = 37/88 (42%), Gaps = 8/88 (9%)

Query: 50  SLTKLDISYCDL--GEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDC 107
            +T +D+S   L  G  A+ S + +L  LE L LS ++     +     + L+ + L   
Sbjct: 51  KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRN 110

Query: 108 KMLQNLPRLPASIHGIFLDGCVSLETLS 135
            +   +  L +      L  C  L+ L+
Sbjct: 111 SLSGPVTTLTS------LGSCSGLKFLN 132

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 57.2 bits (139), Expect = 2e-09
 Identities = 21/109 (19%), Positives = 47/109 (43%), Gaps = 15/109 (13%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++  S+L  L +L +L ++  ++ +    S + NL  +  L+L  N+  +  + +  ++ 
Sbjct: 100 ITDISALQNLTNLRELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLSPLSNMTG 156

Query: 99  LSKIFLKDCK--------MLQNLPRLPAS---IHGI-FLDGCVSLETLS 135
           L+ + + + K         L +L  L  +   I  I  L    SL   +
Sbjct: 157 LNYLTVTESKVKDVTPIANLTDLYSLSLNYNQIEDISPLASLTSLHYFT 205

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 52.9 bits (128), Expect = 5e-08
 Identities = 27/109 (24%), Positives = 48/109 (44%), Gaps = 16/109 (14%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++   +   L S+TKL ++   +       GI  L +LE L+L+GN    +   +  L K
Sbjct: 34  VTDVVTQEELESITKLVVAGEKVAS---IQGIEYLTNLEYLNLNGNQITDISP-LSNLVK 89

Query: 99  LSKIFLKDCKM-----LQNLPRLPA------SIHGI-FLDGCVSLETLS 135
           L+ +++   K+     LQNL  L        +I  I  L     + +L+
Sbjct: 90  LTNLYIGTNKITDISALQNLTNLRELYLNEDNISDISPLANLTKMYSLN 138

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 50.6 bits (122), Expect = 3e-07
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 9/84 (10%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLS 97
           +S  +++  L  L  L++    + +    S + NL  L  L L+ N         I  L+
Sbjct: 255 ISDINAVKDLTKLKMLNVGSNQISD---ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLT 311

Query: 98  KLSKIFLKDCKM-----LQNLPRL 116
            L+ +FL    +     L +L ++
Sbjct: 312 NLTTLFLSQNHITDIRPLASLSKM 335

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 5e-06
 Identities = 19/135 (14%), Positives = 41/135 (30%), Gaps = 39/135 (28%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           M  L  L+    K                         +   + ++ L  L  L ++Y  
Sbjct: 154 MTGLNYLTVTESK-------------------------VKDVTPIANLTDLYSLSLNYNQ 188

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
           + +    S + +L SL       N    +   +  +++L+ + + + K + +L       
Sbjct: 189 IED---ISPLASLTSLHYFTAYVNQITDIT-PVANMTRLNSLKIGNNK-ITDLS------ 237

Query: 121 HGIFLDGCVSLETLS 135
               L     L  L 
Sbjct: 238 ---PLANLSQLTWLE 249

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.8 bits (112), Expect = 6e-06
 Identities = 18/105 (17%), Positives = 35/105 (33%), Gaps = 16/105 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
              + L    +  +    + +         L S+ +L ++G    ++   I  L+ L  +
Sbjct: 16  FPDADLAEGIRAVLQKASVTD---VVTQEELESITKLVVAGEKVASIQG-IEYLTNLEYL 71

Query: 103 FLKDCKM-----LQNLPRLPA------SIHGI-FLDGCVSLETLS 135
            L   ++     L NL +L         I  I  L    +L  L 
Sbjct: 72  NLNGNQITDISPLSNLVKLTNLYIGTNKITDISALQNLTNLRELY 116

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.4 bits (111), Expect = 8e-06
 Identities = 17/79 (21%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           + ++ +  L  L I    + +    S + NL  L  L +  N    + A +  L+KL  +
Sbjct: 215 TPVANMTRLNSLKIGNNKITD---LSPLANLSQLTWLEIGTNQISDINA-VKDLTKLKML 270

Query: 103 FLKDCKM-----LQNLPRL 116
            +   ++     L NL +L
Sbjct: 271 NVGSNQISDISVLNNLSQL 289

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 45.2 bits (108), Expect = 2e-05
 Identities = 18/85 (21%), Positives = 39/85 (45%), Gaps = 11/85 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++  S L+ L  LT L+I    + +    + + +L  L+ L++  N    +   +  LS+
Sbjct: 233 ITDLSPLANLSQLTWLEIGTNQISD---INAVKDLTKLKMLNVGSNQISDISV-LNNLSQ 288

Query: 99  LSKIFLKDCK-------MLQNLPRL 116
           L+ +FL + +       ++  L  L
Sbjct: 289 LNSLFLNNNQLGNEDMEVIGGLTNL 313

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 55.7 bits (135), Expect = 2e-09
 Identities = 25/121 (20%), Positives = 45/121 (37%), Gaps = 29/121 (23%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           + NL+ L   G   +                            +LSGL SLT LDIS+  
Sbjct: 87  LSNLERLRIMGKDVTSDK-----------------------IPNLSGLTSLTLLDISHSA 123

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM-----LQNLPR 115
             +  + + I  L  +  + LS N   T    +  L +L  + ++   +     +++ P+
Sbjct: 124 HDDSIL-TKINTLPKVNSIDLSYNGAITDIMPLKTLPELKSLNIQFDGVHDYRGIEDFPK 182

Query: 116 L 116
           L
Sbjct: 183 L 183

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 42.3 bits (100), Expect = 6e-05
 Identities = 16/89 (17%), Positives = 27/89 (30%), Gaps = 11/89 (12%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMR-WSSDPMALSLPSSLSGLCSLTKLDISYC 59
           + +L  L         S  +     P  +     S   A++    L  L  L  L+I + 
Sbjct: 111 LTSLTLLDISHSAHDDSILTKINTLP-KVNSIDLSYNGAITDIMPLKTLPELKSLNIQFD 169

Query: 60  ---DLGEGAIPSGIGNLCSLEELHLSGNN 85
              D        GI +   L +L+     
Sbjct: 170 GVHDY------RGIEDFPKLNQLYAFSQT 192

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 41.5 bits (98), Expect = 1e-04
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSK 101
           + +    ++  L I+          + I  L +LE L + G +  +     +  L+ L+ 
Sbjct: 60  TGIEYAHNIKDLTINNIHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116

Query: 102 IFLKDCKM-------LQNLPRL 116
           + +            +  LP++
Sbjct: 117 LDISHSAHDDSILTKINTLPKV 138

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 19/83 (22%), Positives = 31/83 (37%), Gaps = 9/83 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLS 100
             S      L  LD+S C++ +        +L  L  L L+GN   +L   +   LS L 
Sbjct: 45  SYSFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQ 103

Query: 101 KIFLKDCK-------MLQNLPRL 116
           K+   +          + +L  L
Sbjct: 104 KLVAVETNLASLENFPIGHLKTL 126

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 56.6 bits (137), Expect = 6e-09
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLS 100
              +  L +L +L++++  +    +P    NL +LE L LS N   ++    +  L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 101 KIFLK 105
            + L 
Sbjct: 177 LLNLS 181

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 55.4 bits (134), Expect = 1e-08
 Identities = 31/152 (20%), Positives = 46/152 (30%), Gaps = 22/152 (14%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
               + L    CK              +L R +          S   L SL  LD+S   
Sbjct: 303 NFGWQHLELVNCKFGQFPTLKLK----SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNG 358

Query: 61  LG-EGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK--------MLQ 111
           L  +G          SL+ L LS N   T+ ++   L +L  +  +           +  
Sbjct: 359 LSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 112 NLPRLPA------SIHGIF---LDGCVSLETL 134
           +L  L             F    +G  SLE L
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVL 450

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 29/141 (20%), Positives = 48/141 (34%), Gaps = 17/141 (12%)

Query: 1   MKNLKELSFRGCK-GSPSSASWFLPFP----INLMRWSSDPMALSLPSSLSGLCSLTKLD 55
           ++ L+ L F+       S  S FL       +++   S     ++     +GL SL  L 
Sbjct: 395 LEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDI---SHTHTRVAFNGIFNGLSSLEVLK 451

Query: 56  ISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLP 114
           ++     E  +P     L +L  L LS      L P +   LS L  + +       +L 
Sbjct: 452 MAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNN-FFSLD 510

Query: 115 RLPASIHGIFLDGCVSLETLS 135
                          SL+ L 
Sbjct: 511 TF-------PYKCLNSLQVLD 524

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 23/97 (23%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSK 98
            +P +L    S   LD+S+  L          +   L+ L LS     T+   +   LS 
Sbjct: 21  KIPDNLPF--STKNLDLSFNPL-RHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           LS + L     +Q+L             G  SL+ L 
Sbjct: 78  LSTLILTGNP-IQSLALGA-------FSGLSSLQKLV 106

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 17/97 (17%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSK 98
           ++ S+  GL  L  LD  + +L + +  S   +L +L  L +S  +           LS 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + +              +          +L  L 
Sbjct: 447 LEVLKMAGN-------SFQENFLPDIFTELRNLTFLD 476

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 44.6 bits (106), Expect = 4e-05
 Identities = 23/116 (19%), Positives = 36/116 (31%), Gaps = 14/116 (12%)

Query: 33  SSDPMALSLPSSLSGLCSLT--KLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP 90
           +   +     S+L GLC+LT  +  ++Y D     I      L ++    L       + 
Sbjct: 239 NEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVK 298

Query: 91  ASIYRLSKLSKIFLKDCKM----------LQNLPRLPASIHGIF-LDGCVSLETLS 135
              Y       + L +CK           L+ L          F      SLE L 
Sbjct: 299 DFSY-NFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLD 353

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 16/65 (24%), Positives = 28/65 (43%), Gaps = 3/65 (4%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR--LSKL 99
           P++ + L SL  L++S+ +            L SL+ L  S N+  T      +   S L
Sbjct: 487 PTAFNSLSSLQVLNMSHNNF-FSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545

Query: 100 SKIFL 104
           + + L
Sbjct: 546 AFLNL 550

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 41.9 bits (99), Expect = 2e-04
 Identities = 25/150 (16%), Positives = 46/150 (30%), Gaps = 24/150 (16%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFP--------INLMRWSSDPMALSLPSSLSGLCSLT 52
           + NL+ L     K      +              ++L   S +PM    P +   +  L 
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL---SLNPMNFIQPGAFKEI-RLH 203

Query: 53  KLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-------PASIYRLSKLSKIFLK 105
           KL +         + + I  L  LE   L    F           +++  L  L+    +
Sbjct: 204 KLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR 263

Query: 106 DCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
               L  L      I  +F +   ++ + S
Sbjct: 264 ----LAYLDYYLDDIIDLF-NCLTNVSSFS 288

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 56.1 bits (135), Expect = 9e-09
 Identities = 26/97 (26%), Positives = 41/97 (42%), Gaps = 12/97 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP  L     +T L I   +L    +P+    L     L +SGN   +LP     L +L
Sbjct: 54  TLPDCL--PAHITTLVIPDNNLTS--LPALPPEL---RTLEVSGNQLTSLPVLPPGLLEL 106

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
           S         L +LP LP+ +  +++ G   L +L  
Sbjct: 107 SIFSNP----LTHLPALPSGLCKLWIFGN-QLTSLPV 138

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 19/75 (25%), Positives = 27/75 (36%), Gaps = 9/75 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           SLP   S    L +L +S   L    +P     L     L +  N    LP S+  LS  
Sbjct: 235 SLPVLPS---ELKELMVSGNRLTS--LPMLPSGL---LSLSVYRNQLTRLPESLIHLSSE 286

Query: 100 SKIFLKDCKMLQNLP 114
           + + L+    L    
Sbjct: 287 TTVNLEGNP-LSERT 300

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 53.0 bits (127), Expect = 8e-08
 Identities = 27/115 (23%), Positives = 43/115 (37%), Gaps = 27/115 (23%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNL-----------------CSLEELHLS 82
           SLP   S    L +L +S   L    +P+    L                   L+EL +S
Sbjct: 175 SLPMLPS---GLQELSVSDNQLAS--LPTLPSELYKLWAYNNRLTSLPALPSGLKELIVS 229

Query: 83  GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137
           GN   +LP     L +L    +   + L +LP LP+ +  + +     L  L + 
Sbjct: 230 GNRLTSLPVLPSELKELM---VSGNR-LTSLPMLPSGLLSLSVYRN-QLTRLPES 279

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 51.4 bits (123), Expect = 3e-07
 Identities = 26/97 (26%), Positives = 39/97 (40%), Gaps = 13/97 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           SLP+       L KL      L    +P     L   +EL +S N   +LP     L KL
Sbjct: 155 SLPALP---SELCKLWAYNNQLTS--LPMLPSGL---QELSVSDNQLASLPTLPSELYKL 206

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
                 + + L +LP LP+ +  + + G   L +L  
Sbjct: 207 W---AYNNR-LTSLPALPSGLKELIVSGN-RLTSLPV 238

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 49.5 bits (118), Expect = 1e-06
 Identities = 27/98 (27%), Positives = 40/98 (40%), Gaps = 13/98 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP+  S    L KL I    L    +P     L   +EL +S N   +LPA    L KL
Sbjct: 115 HLPALPS---GLCKLWIFGNQLTS--LPVLPPGL---QELSVSDNQLASLPALPSELCKL 166

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137
                 + + L +LP LP+ +  + +     L +L   
Sbjct: 167 W---AYNNQ-LTSLPMLPSGLQELSVSDN-QLASLPTL 199

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 47.2 bits (112), Expect = 5e-06
 Identities = 18/86 (20%), Positives = 29/86 (33%), Gaps = 9/86 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR---- 95
           SLP   S    L  L +    L    +P  + +L S   ++L GN          R    
Sbjct: 255 SLPMLPS---GLLSLSVYRNQLTR--LPESLIHLSSETTVNLEGNPLSERTLQALREITS 309

Query: 96  LSKLSKIFLKDCKMLQNLPRLPASIH 121
               S   ++      + PR   ++H
Sbjct: 310 APGYSGPIIRFDMAGASAPRETRALH 335

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.4 bits (133), Expect = 1e-08
 Identities = 18/71 (25%), Positives = 24/71 (33%), Gaps = 9/71 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE----LHLSGNNFFTLPASIYR 95
            LP       SL  LD+S   L    +P+        EE         N    +P +I  
Sbjct: 174 FLPELPE---SLEALDVSTNLLES--LPAVPVRNHHSEETEIFFRCRENRITHIPENILS 228

Query: 96  LSKLSKIFLKD 106
           L     I L+D
Sbjct: 229 LDPTCTIILED 239

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 25/98 (25%), Positives = 39/98 (39%), Gaps = 13/98 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP   +   SL  LD+    L    +P     L   E ++   N    LP     L  L
Sbjct: 114 TLPELPA---SLKHLDVDNNQLTM--LPELPALL---EYINADNNQLTMLPELPTSLEVL 165

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG 137
           S   +++ + L  LP LP S+  + +     LE+L   
Sbjct: 166 S---VRNNQ-LTFLPELPESLEALDVSTN-LLESLPAV 198

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 53.4 bits (128), Expect = 6e-08
 Identities = 20/97 (20%), Positives = 34/97 (35%), Gaps = 15/97 (15%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP   +   SL  L +    L    +P    +L   E L +S N   +LPA   R    
Sbjct: 154 MLPELPT---SLEVLSVRNNQLTF--LPELPESL---EALDVSTNLLESLPAVPVRNHHS 205

Query: 100 SKIFLK-DCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            +  +   C+  + +  +P +I            T+ 
Sbjct: 206 EETEIFFRCRENR-ITHIPENIL-----SLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 51.1 bits (122), Expect = 3e-07
 Identities = 31/105 (29%), Positives = 41/105 (39%), Gaps = 20/105 (19%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           SLP +L     +T L+I+   L    +P    +L   E L    N   TLP     L  L
Sbjct: 73  SLPDNL--PPQITVLEITQNALIS--LPELPASL---EYLDACDNRLSTLPELPASLKHL 125

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDG---------CVSLETLS 135
               + + + L  LP LPA +  I  D            SLE LS
Sbjct: 126 D---VDNNQ-LTMLPELPALLEYINADNNQLTMLPELPTSLEVLS 166

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 44.2 bits (104), Expect = 5e-05
 Identities = 9/66 (13%), Positives = 15/66 (22%), Gaps = 6/66 (9%)

Query: 40  SLPSSLSGLCSLTK----LDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR 95
           SLP+         +           +    IP  I +L     + L  N   +       
Sbjct: 194 SLPAVPVRNHHSEETEIFFRCRENRITH--IPENILSLDPTCTIILEDNPLSSRIRESLS 251

Query: 96  LSKLSK 101
                 
Sbjct: 252 QQTAQP 257

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 54.2 bits (131), Expect = 2e-08
 Identities = 12/94 (12%), Positives = 27/94 (28%), Gaps = 10/94 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
                    +  LD+   ++          +  +LE L+L  N  + +   +   +KL  
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKT 195

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + L        L  +              +  +S
Sbjct: 196 LDLSSN----KLAFMGPEFQ-----SAAGVTWIS 220

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 53.1 bits (128), Expect = 5e-08
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            +   +     L  LD+S   L    +     +   +  + L  N    +  ++     L
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239

Query: 100 SKIFLKD 106
               L+ 
Sbjct: 240 EHFDLRG 246

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
            S      ++ +LD+S   L +  I +  +     LE L+LS N  +     +  LS L 
Sbjct: 27  ASLRQSAWNVKELDLSGNPLSQ--ISAADLAPFTKLELLNLSSNVLYETL-DLESLSTLR 83

Query: 101 KIFLKDCKMLQNLPRLPA 118
            + L +   +Q L   P+
Sbjct: 84  TLDLNNNY-VQELLVGPS 100

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 19/78 (24%), Positives = 30/78 (38%), Gaps = 9/78 (11%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           L     L  L +L  LD++   + E      +    S+E LH + NN   +  S      
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR--GQG 121

Query: 99  LSKIFLKDCKMLQNLPRL 116
              I+L + K +  L  L
Sbjct: 122 KKNIYLANNK-ITMLRDL 138

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSGNNFFTLPA-SIYRLS 97
           ++              ++   L +    + +  +  +++EL LSGN    + A  +   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 98  KLSKIFLKDCKM-----LQNLPRL 116
           KL  + L    +     L++L  L
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTL 82

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 21/97 (21%), Positives = 32/97 (32%), Gaps = 8/97 (8%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYRLS 97
                S   L SL  LD+S   L      S       SL+ L LS N   T+ ++   L 
Sbjct: 337 GGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLE 396

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
           +L  +  +    L+ +                +L  L
Sbjct: 397 QLEHLDFQHSN-LKQMS------EFSVFLSLRNLIYL 426

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
             S      L  LD+S C++    I  G   +L  L  L L+GN   +L    +  LS L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQT--IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            K+   +   L +L           +    +L+ L+
Sbjct: 103 QKLVAVETN-LASLE-------NFPIGHLKTLKELN 130

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 24/94 (25%), Positives = 39/94 (41%), Gaps = 9/94 (9%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLS 100
               +GL SL  L ++     E  +P     L +L  L LS      L  + +  LS L 
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
            + +   + L+++P       GIF D   SL+ +
Sbjct: 498 VLNMASNQ-LKSVPD------GIF-DRLTSLQKI 523

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 49.7 bits (119), Expect = 8e-07
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 10/83 (12%)

Query: 41  LPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSK 98
           LP   + L +LT LD+S C L +  +      +L SL+ L+++ N   ++P  I+ RL+ 
Sbjct: 462 LPDIFTELRNLTFLDLSQCQLEQ--LSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTS 519

Query: 99  LSKIFLK------DCKMLQNLPR 115
           L KI+L        C  +  L R
Sbjct: 520 LQKIWLHTNPWDCSCPRIDYLSR 542

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 30/100 (30%), Positives = 44/100 (44%), Gaps = 13/100 (13%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNF--FTLPASIYR 95
           +S  S    L +L  LDIS+         +GI   L SLE L ++GN+F    LP     
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRV--AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTE 468

Query: 96  LSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  L+ + L  C+ L+ L          F +   SL+ L+
Sbjct: 469 LRNLTFLDLSQCQ-LEQLS------PTAF-NSLSSLQVLN 500

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 48.2 bits (115), Expect = 2e-06
 Identities = 18/97 (18%), Positives = 33/97 (34%), Gaps = 8/97 (8%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASI-YRLSK 98
           ++ S+  GL  L  LD  + +L + +  S   +L +L  L +S  +       I   LS 
Sbjct: 387 TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 446

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + +              +          +L  L 
Sbjct: 447 LEVLKMAGN-------SFQENFLPDIFTELRNLTFLD 476

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 14/65 (21%), Positives = 30/65 (46%), Gaps = 1/65 (1%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS 100
              +  L +L +L++++  +    +P    NL +LE L LS N   ++    +  L ++ 
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176

Query: 101 KIFLK 105
            + L 
Sbjct: 177 LLNLS 181

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 54.0 bits (130), Expect = 3e-08
 Identities = 24/96 (25%), Positives = 43/96 (44%), Gaps = 11/96 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
             + +GL +L  L++    L    IP+G    L  L+EL L  N   ++P+  +  +  L
Sbjct: 105 IGAFNGLANLNTLELFDNRLTT--IPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSL 162

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++ L + K L  +        G F +G  +L  L+
Sbjct: 163 RRLDLGELKRLSYISE------GAF-EGLSNLRYLN 191

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 45.5 bits (108), Expect = 1e-05
 Identities = 24/77 (31%), Positives = 34/77 (44%), Gaps = 10/77 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
           P S  GL  L KL +    +    I      NL SL E++L+ NN   LP  ++  L  L
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQV--IERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 100 SKIFLK------DCKML 110
            +I L       +C +L
Sbjct: 282 ERIHLHHNPWNCNCDIL 298

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 25/99 (25%), Positives = 39/99 (39%), Gaps = 12/99 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-L 96
           L    +L+ L  L +LD+S   L   AI  G    L  L++L +  +    +  + +  L
Sbjct: 197 LREIPNLTPLIKLDELDLSGNHL--SAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL 254

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             L +I L     L  LP      H +F      LE + 
Sbjct: 255 QSLVEINLAHNN-LTLLP------HDLF-TPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 23/96 (23%), Positives = 38/96 (39%), Gaps = 13/96 (13%)

Query: 42  PSSLSGLCSLTKLDISYC-DLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKL 99
             + + + SL +LD+     L    I  G    L +L  L+L+  N   +P  +  L KL
Sbjct: 153 SYAFNRIPSLRRLDLGELKRLSY--ISEGAFEGLSNLRYLNLAMCNLREIPN-LTPLIKL 209

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++ L     L  +        G F  G + L+ L 
Sbjct: 210 DELDLSGNH-LSAIRP------GSF-QGLMHLQKLW 237

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 54.2 bits (131), Expect = 3e-08
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSKLS 100
             + S L  L  LD+   ++G+         L ++ E++LS N +  L   S   +  L 
Sbjct: 398 SDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQ 457

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           ++ L+    L+N+   P+           +L  L 
Sbjct: 458 RLMLRRVA-LKNVDSSPSPFQ-----PLRNLTILD 486

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 23/103 (22%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           S PS    L +LT LD+S  ++        +  L  LE L L  NN   L         +
Sbjct: 471 SSPSPFQPLRNLTILDLSNNNI-ANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPI 529

Query: 100 SKIFLKDCKMLQ-------NLPRLPASIHGIFLDGCVSLETLS 135
              FLK    L            +P  +          L+ + 
Sbjct: 530 Y--FLKGLSHLHILNLESNGFDEIPVEV----FKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.9 bits (125), Expect = 2e-07
 Identities = 18/95 (18%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS 100
            ++ +    LT LD+ +  +     P     L  L+ L+L  N    L   +    + L+
Sbjct: 42  AANFTRYSQLTSLDVGFNTI-SKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLT 100

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           ++ L     +Q +   P            +L TL 
Sbjct: 101 ELHLMSNS-IQKIKNNP-------FVKQKNLITLD 127

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 51.5 bits (124), Expect = 3e-07
 Identities = 27/144 (18%), Positives = 44/144 (30%), Gaps = 18/144 (12%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFP---------INLMRWSSDPMALSLPSSLSGLCSL 51
           ++NL  L       +  +                  NL R             L GL  L
Sbjct: 479 LRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHL 538

Query: 52  TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASI-YRLSKLSKIFLKDCKML 110
             L++      +        +L  L+ + L  NN  TLPAS+      L  + L+     
Sbjct: 539 HILNLESNGF-DEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK---- 593

Query: 111 QNLPRLPASIHGIFLDGCVSLETL 134
            N   + +    +F     +L  L
Sbjct: 594 -N--LITSVEKKVFGPAFRNLTEL 614

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 23/96 (23%), Positives = 37/96 (38%), Gaps = 2/96 (2%)

Query: 42  PSSLSGLCSLTKLDISYCDL-GEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKL 99
            +S + + SL +L +    L    + PS    L +L  L LS NN   +    +  L KL
Sbjct: 447 RNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL 506

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             + L+   + +            FL G   L  L+
Sbjct: 507 EILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 47.3 bits (113), Expect = 6e-06
 Identities = 19/97 (19%), Positives = 33/97 (34%), Gaps = 12/97 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL-PASIYRLSK 98
            +P  L    ++T L++++  L      +       L  L +  N    L P    +L  
Sbjct: 18  QVPDDL--PTNITVLNLTHNQL-RRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPM 74

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + L+  + L  L          F   C +L  L 
Sbjct: 75  LKVLNLQHNE-LSQLSD------KTF-AFCTNLTELH 103

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 8e-06
 Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 12/97 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA---SIYRLSK 98
            +      +L  LD+S+  L           L +L+EL LS N    L +    I+  S 
Sbjct: 114 NNPFVKQKNLITLDLSHNGL-SSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSS 172

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L K+ L   + ++     P   H         L  L 
Sbjct: 173 LKKLELSSNQ-IKEFS--PGCFH-----AIGRLFGLF 201

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 46.5 bits (111), Expect = 1e-05
 Identities = 24/135 (17%), Positives = 46/135 (34%), Gaps = 23/135 (17%)

Query: 1   MKNLKELSFRGCK--GSPSSASWFLPFP----INLMRWSSDPMALSLPSSLSGLCSLTKL 54
           ++NL+EL     K     S             + L   SS+ +    P     +  L  L
Sbjct: 144 LENLQELLLSNNKIQALKSEELDIFANSSLKKLEL---SSNQIKEFSPGCFHAIGRLFGL 200

Query: 55  DISYCDLGEGAIPSGIG---NLCSLEELHLSGNNFFTLPASIY---RLSKLSKIFLKDCK 108
            ++   LG  ++   +       S+  L LS +   T   + +   + + L+ + L    
Sbjct: 201 FLNNVQLG-PSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNN 259

Query: 109 M-------LQNLPRL 116
           +          LP+L
Sbjct: 260 LNVVGNDSFAWLPQL 274

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 17/97 (17%), Positives = 35/97 (36%), Gaps = 11/97 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLC--SLEELHLSGNNFFTLPA-SIYRLS 97
            +  +GL +L  L +S        + +    +L    L  L+L+ N    + + +   L 
Sbjct: 346 SNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLG 405

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
            L  + L   ++ Q L        G    G  ++  +
Sbjct: 406 HLEVLDLGLNEIGQELT-------GQEWRGLENIFEI 435

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/96 (15%), Positives = 32/96 (33%), Gaps = 11/96 (11%)

Query: 44  SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF-FTLPASI---YRLSKL 99
            +    SL KL++S   + +   P     +  L  L L+      +L   +      + +
Sbjct: 166 DIFANSSLKKLELSSNQI-KEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSI 224

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             + L + + L        +  G+      +L  L 
Sbjct: 225 RNLSLSNSQ-LSTTS--NTTFLGLKW---TNLTMLD 254

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 22/81 (27%), Positives = 32/81 (39%), Gaps = 10/81 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP       SL  +      L E  +P  + NL  L  ++   N   TLP        L
Sbjct: 209 KLPDLP---LSLESIVAGNNILEE--LPE-LQNLPFLTTIYADNNLLKTLPDLP---PSL 259

Query: 100 SKIFLKDCKMLQNLPRLPASI 120
             + ++D   L +LP LP S+
Sbjct: 260 EALNVRDNY-LTDLPELPQSL 279

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 20/98 (20%), Positives = 32/98 (32%), Gaps = 10/98 (10%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           L     L  L  LT +      L    +P    +   LE L++  N    LP     L+ 
Sbjct: 227 LEELPELQNLPFLTTIYADNNLLKT--LPDLPPS---LEALNVRDNYLTDLPELPQSLTF 281

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
           L             L  LP +++ +       + +L D
Sbjct: 282 LDVSENI----FSGLSELPPNLYYLNASSN-EIRSLCD 314

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.7 bits (127), Expect = 8e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 50  SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM 109
              +L+++   L    +P    +L   E L  S N+   LP     L  L          
Sbjct: 72  QAHELELNNLGLSS--LPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNN---- 122

Query: 110 LQNLPRLPASIHGIFLDGCVSLETLSD 136
           L+ L  LP  +  + +     LE L +
Sbjct: 123 LKALSDLPPLLEYLGVSNN-QLEKLPE 148

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 18/82 (21%), Positives = 29/82 (35%), Gaps = 16/82 (19%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP+       L +L  S+  L E  +P    NL   ++LH+  N     P     +  L
Sbjct: 331 ELPALP---PRLERLIASFNHLAE--VPELPQNL---KQLHVEYNPLREFPDIPESVEDL 382

Query: 100 SKIFLKDCKMLQNLPRLPASIH 121
                   +M  +L  +P    
Sbjct: 383 --------RMNSHLAEVPELPQ 396

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 51.5 bits (124), Expect = 2e-07
 Identities = 20/96 (20%), Positives = 30/96 (31%), Gaps = 19/96 (19%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP       SL  +      L E  +P  + NL  L  ++   N+   LP     L  +
Sbjct: 167 KLPDLPP---SLEFIAAGNNQLEE--LPE-LQNLPFLTAIYADNNSLKKLPDLPLSLESI 220

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
                 +   L+ LP L              L T+ 
Sbjct: 221 V---AGNNI-LEELPELQ---------NLPFLTTIY 243

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 49.2 bits (118), Expect = 1e-06
 Identities = 23/98 (23%), Positives = 37/98 (37%), Gaps = 8/98 (8%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           L     L  L  LT +      L +  +P    +   LE +    N    LP  +  L  
Sbjct: 185 LEELPELQNLPFLTAIYADNNSLKK--LPDLPLS---LESIVAGNNILEELP-ELQNLPF 238

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
           L+ I+  +   L+ LP LP S+  + +     L  L +
Sbjct: 239 LTTIYADNNL-LKTLPDLPPSLEALNVRDN-YLTDLPE 274

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 27/97 (27%), Positives = 38/97 (39%), Gaps = 11/97 (11%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            LP     L SL   + +   L +  +P        LE L +S N    LP  +   S L
Sbjct: 105 ELPELPQSLKSLLVDNNNLKALSD--LPP------LLEYLGVSNNQLEKLP-ELQNSSFL 155

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
             I + +   L+ LP LP S+  I       LE L +
Sbjct: 156 KIIDVDNNS-LKKLPDLPPSLEFIAAGNN-QLEELPE 190

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 5e-06
 Identities = 21/77 (27%), Positives = 33/77 (42%), Gaps = 6/77 (7%)

Query: 43  SSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL-- 99
            +LS L   L  L +S   L +  +P  + N   L+ + +  N+   LP     L  +  
Sbjct: 124 KALSDLPPLLEYLGVSNNQLEK--LPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAA 180

Query: 100 SKIFLKDCKMLQNLPRL 116
               L++   LQNLP L
Sbjct: 181 GNNQLEELPELQNLPFL 197

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 46.9 bits (112), Expect = 7e-06
 Identities = 22/97 (22%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            L        +L  L+ S  ++    +     +L   EEL++S N    LPA   RL +L
Sbjct: 291 GLSELPP---NLYYLNASSNEIRS--LCDLPPSL---EELNVSNNKLIELPALPPRLERL 342

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
                     L  +P LP ++  + ++    L    D
Sbjct: 343 I---ASFNH-LAEVPELPQNLKQLHVEYN-PLREFPD 374

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 44.2 bits (105), Expect = 5e-05
 Identities = 19/97 (19%), Positives = 37/97 (38%), Gaps = 13/97 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +LP       SL  L++    L +  +P    +L  L+      +    LP ++Y L+  
Sbjct: 251 TLPDLP---PSLEALNVRDNYLTD--LPELPQSLTFLDVSENIFSGLSELPPNLYYLN-- 303

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD 136
                   + +++L  LP S+  + +     L  L  
Sbjct: 304 ----ASSNE-IRSLCDLPPSLEELNVSNN-KLIELPA 334

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 13/76 (17%), Positives = 24/76 (31%), Gaps = 21/76 (27%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNL----------------CSLEELHLSG 83
            +P       +L +L + Y  L E   P    ++                 +L++LH+  
Sbjct: 351 EVPELPQ---NLKQLHVEYNPLRE--FPDIPESVEDLRMNSHLAEVPELPQNLKQLHVET 405

Query: 84  NNFFTLPASIYRLSKL 99
           N     P     +  L
Sbjct: 406 NPLREFPDIPESVEDL 421

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 17/89 (19%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFT-LPASIYRLSKLS 100
           P ++S    L +      +L E  +P    N+ S  E + + + +    P       +++
Sbjct: 5   PRNVS-NTFLQEPLRHSSNLTE--MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMA 61

Query: 101 KIFLKDCKMLQ---------NLPRLPASI 120
              L+DC   Q          L  LP   
Sbjct: 62  VSRLRDCLDRQAHELELNNLGLSSLPELP 90

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 53.1 bits (128), Expect = 4e-08
 Identities = 21/95 (22%), Positives = 33/95 (34%), Gaps = 8/95 (8%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
                 L  LTKL +S   L      S       SL+ L LS N   T+ ++   L +L 
Sbjct: 45  HGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLE 104

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            +  +    L+ +         +F     +L  L 
Sbjct: 105 HLDFQHSN-LKQMSE-----FSVF-LSLRNLIYLD 132

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/97 (21%), Positives = 37/97 (38%), Gaps = 8/97 (8%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSK 98
           ++ S+  GL  L  LD  + +L + +  S   +L +L  L +S  +       I+  LS 
Sbjct: 92  TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSS 151

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + +      +N          IF     +L  L 
Sbjct: 152 LEVLKMAGNSFQENFL------PDIF-TELRNLTFLD 181

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 46.5 bits (111), Expect = 6e-06
 Identities = 30/144 (20%), Positives = 45/144 (31%), Gaps = 27/144 (18%)

Query: 3   NLKELSFRGCK-GSPSSASWFLPFPINLMRWSSDPMALSL---------PSSLSGLCSLT 52
            L+ L F+       S  S FL    NL+        L +             +GL SL 
Sbjct: 102 QLEHLDFQHSNLKQMSEFSVFLSLR-NLIY-------LDISHTHTRVAFNGIFNGLSSLE 153

Query: 53  KLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLSKIFLKDCKMLQ 111
            L ++     E  +P     L +L  L LS      L  + +  LS L  + +       
Sbjct: 154 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNF-- 211

Query: 112 NLPRLPASIHGIFLDGCVSLETLS 135
                  S+         SL+ L 
Sbjct: 212 ------FSLDTFPYKCLNSLQVLD 229

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 17/78 (21%), Positives = 33/78 (42%), Gaps = 11/78 (14%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR--LSK 98
           P++ + L SL  L++S+ +    ++ +     L SL+ L  S N+  T      +   S 
Sbjct: 192 PTAFNSLSSLQVLNMSHNNFF--SLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSS 249

Query: 99  LSKIFLK------DCKML 110
           L+ + L        C+  
Sbjct: 250 LAFLNLTQNDFACTCEHQ 267

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 53.7 bits (129), Expect = 4e-08
 Identities = 13/94 (13%), Positives = 28/94 (29%), Gaps = 10/94 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
                    +  LD+   ++          +  +LE L+L  N  + +   +   +KL  
Sbjct: 137 DLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVV-FAKLKT 195

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + L   K    L  +              +  +S
Sbjct: 196 LDLSSNK----LAFMGPEFQ-----SAAGVTWIS 220

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 52.9 bits (127), Expect = 8e-08
 Identities = 9/67 (13%), Positives = 20/67 (29%), Gaps = 3/67 (4%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            +   +     L  LD+S   L    +     +   +  + L  N    +  ++     L
Sbjct: 183 DVKGQVV-FAKLKTLDLSSNKLAF--MGPEFQSAAGVTWISLRNNKLVLIEKALRFSQNL 239

Query: 100 SKIFLKD 106
               L+ 
Sbjct: 240 EHFDLRG 246

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 18/76 (23%), Positives = 30/76 (39%), Gaps = 3/76 (3%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
            S      ++ +LD+S   L      + +     LE L+LS N  +     +  LS L  
Sbjct: 27  ASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRT 84

Query: 102 IFLKDCKMLQNLPRLP 117
           + L +   +Q L   P
Sbjct: 85  LDLNNNY-VQELLVGP 99

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 51.4 bits (123), Expect = 2e-07
 Identities = 15/97 (15%), Positives = 35/97 (36%), Gaps = 12/97 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++     +   +L  L++ Y  + +  +   +     L+ L LS N    +       + 
Sbjct: 159 VNFAELAASSDTLEHLNLQYNFIYD--VKGQV-VFAKLKTLDLSSNKLAFMGPEFQSAAG 215

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           ++ I L++ K L  + +         L    +LE   
Sbjct: 216 VTWISLRNNK-LVLIEKA--------LRFSQNLEHFD 243

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 20/97 (20%), Positives = 33/97 (34%), Gaps = 16/97 (16%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           L     L  L +L  LD++   + E      +    S+E LH + NN   +  S      
Sbjct: 70  LYETLDLESLSTLRTLDLNNNYVQE------LLVGPSIETLHAANNNISRVSCSR--GQG 121

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
              I+L + K +  L  L              ++ L 
Sbjct: 122 KKNIYLANNK-ITMLRDL-------DEGCRSRVQYLD 150

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 13/94 (13%), Positives = 30/94 (31%), Gaps = 12/94 (12%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSK 101
             L    S+  L  +  ++    +    G     + ++L+ N    L        S++  
Sbjct: 93  QELLVGPSIETLHAANNNISR--VSCSRGQ--GKKNIYLANNKITMLRDLDEGCRSRVQY 148

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + LK  + +  +                +LE L+
Sbjct: 149 LDLKLNE-IDTVNF------AELAASSDTLEHLN 175

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 14/84 (16%), Positives = 32/84 (38%), Gaps = 9/84 (10%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSGNNFFTLPA-SIYRLS 97
           ++              ++   L +    + +  +  +++EL LSGN    + A  +   +
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQ--ALASLRQSAWNVKELDLSGNPLSQISAADLAPFT 58

Query: 98  KLSKIFLKDCKM-----LQNLPRL 116
           KL  + L    +     L++L  L
Sbjct: 59  KLELLNLSSNVLYETLDLESLSTL 82

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 53.1 bits (128), Expect = 6e-08
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +L      + +L  LD+S+  L    +         LE L+L  N+  TL  S      L
Sbjct: 286 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKLST--HHTL 341

Query: 100 SKIFLK------DCKM--LQNLPRL 116
             + L       +      +N+ R 
Sbjct: 342 KNLTLSHNDWDCNSLRALFRNVARP 366

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.9 bits (117), Expect = 1e-06
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
            + L     +  L+++   + E  I +       ++++L++  N    LP  +++ +  L
Sbjct: 62  AALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + + L+    L +LPR      GIF      L TLS
Sbjct: 120 TVLVLERND-LSSLPR------GIF-HNTPKLTTLS 147

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
                 +  L +L IS   L    +      + +L+ L LS N+   +  +  +  +L  
Sbjct: 265 YHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 322

Query: 102 IFLKDCKM-------LQNLPRL 116
           ++L    +          L  L
Sbjct: 323 LYLDHNSIVTLKLSTHHTLKNL 344

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 45.0 bits (107), Expect = 2e-05
 Identities = 22/104 (21%), Positives = 40/104 (38%), Gaps = 12/104 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
           P     +  LT L +   DL    +P GI  N   L  L +S NN   +    ++  + L
Sbjct: 110 PHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 167

Query: 100 SKIFLKDCK-------MLQNLPRLPASIHGI-FLDGCVSLETLS 135
             + L   +       ++ +L     S + +  L   +++E L 
Sbjct: 168 QNLQLSSNRLTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELD 211

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 51.9 bits (125), Expect = 7e-08
 Identities = 31/99 (31%), Positives = 50/99 (50%), Gaps = 13/99 (13%)

Query: 40  SLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RL 96
           +LP+ +   L +L  L ++   L   A+P G+   L +L EL L  N   +LP  ++  L
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQ--ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSL 132

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           +KL+ + L   + LQ+LP       G+F D   SL+ L 
Sbjct: 133 TKLTYLSLGYNE-LQSLP------KGVF-DKLTSLKELR 163

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 41.5 bits (98), Expect = 2e-04
 Identities = 32/109 (29%), Positives = 51/109 (46%), Gaps = 16/109 (14%)

Query: 40  SLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RL 96
           SLP  +   L  LT L + Y +L   ++P G+   L SL+EL L  N    +P   + +L
Sbjct: 123 SLPPRVFDSLTKLTYLSLGYNELQ--SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKL 180

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLET--LSDGYWRDCS 143
           ++L  + L +   L+ +P       G F D    L+   L +  W DC+
Sbjct: 181 TELKTLKLDN-NQLKRVP------EGAF-DSLEKLKMLQLQENPW-DCT 220

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 52.8 bits (127), Expect = 8e-08
 Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 11/96 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
             + +GL SL  L++    L    IPSG    L  L EL L  N   ++P+  +  +  L
Sbjct: 116 VGAFNGLASLNTLELFDNWLTV--IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSL 173

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++ L + K L+ +        G F +G  +L+ L+
Sbjct: 174 MRLDLGELKKLEYISE------GAF-EGLFNLKYLN 202

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 10/77 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
           P S  GL SL KL +    +    I       L SL EL+L+ NN  +LP  ++  L  L
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSL--IERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYL 292

Query: 100 SKIFLK------DCKML 110
            ++ L       DC +L
Sbjct: 293 VELHLHHNPWNCDCDIL 309

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 34/98 (34%), Positives = 48/98 (48%), Gaps = 12/98 (12%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLS 97
           SLP     L +LT LD+S+  L   ++P G    L  L+EL+L GN   TLP  +     
Sbjct: 91  SLPLLGQTLPALTVLDVSFNRLT--SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTP 148

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           KL K+ L +   L  LP       G+  +G  +L+TL 
Sbjct: 149 KLEKLSLANNN-LTELP------AGLL-NGLENLDTLL 178

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 45.9 bits (109), Expect = 8e-06
 Identities = 23/94 (24%), Positives = 37/94 (39%), Gaps = 11/94 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
            ++L     LT+L++   +L    +    G L  L  L LS N   +LP     L  L+ 
Sbjct: 48  LATLMPYTRLTQLNLDRAELT--KLQVD-GTLPVLGTLDLSHNQLQSLPLLGQTLPALTV 104

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + +   + L +LP       G    G   L+ L 
Sbjct: 105 LDVSFNR-LTSLPL------GAL-RGLGELQELY 130

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 24/106 (22%), Positives = 44/106 (41%), Gaps = 17/106 (16%)

Query: 40  SLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLS 97
           +LP  L +    L KL ++  +L    +P+G+   L +L+ L L  N+ +T+P   +   
Sbjct: 138 TLPPGLLTPTPKLEKLSLANNNLT--ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSH 195

Query: 98  KLSKIFLK------DCKML-------QNLPRLPASIHGIFLDGCVS 130
            L   FL       +C++L        N   +     G+ +    S
Sbjct: 196 LLPFAFLHGNPWLCNCEILYFRRWLQDNAENVYVWKQGVDVKAMTS 241

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 52.2 bits (125), Expect = 1e-07
 Identities = 18/85 (21%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           +L      + +L  LD+S+  L    +         LE L+L  N+  TL  S      L
Sbjct: 292 ALNLYGQPIPTLKVLDLSHNHLLH--VERNQPQFDRLENLYLDHNSIVTLKLST--HHTL 347

Query: 100 SKIFLK------DCKM--LQNLPRL 116
             + L       +      +N+ R 
Sbjct: 348 KNLTLSHNDWDCNSLRALFRNVARP 372

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 51.5 bits (123), Expect = 3e-07
 Identities = 21/96 (21%), Positives = 42/96 (43%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
            + L     +  L+++   + E  I +       ++++L++  N    LP  +++ +  L
Sbjct: 68  AALLDSFRQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           + + L+    L +LPR      GIF      L TLS
Sbjct: 126 TVLVLERND-LSSLPR------GIF-HNTPKLTTLS 153

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 50.7 bits (121), Expect = 4e-07
 Identities = 14/82 (17%), Positives = 28/82 (34%), Gaps = 9/82 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
                 +  L +L IS   L    +      + +L+ L LS N+   +  +  +  +L  
Sbjct: 271 YHPFVKMQRLERLYISNNRLVA--LNLYGQPIPTLKVLDLSHNHLLHVERNQPQFDRLEN 328

Query: 102 IFLKDCKM-------LQNLPRL 116
           ++L    +          L  L
Sbjct: 329 LYLDHNSIVTLKLSTHHTLKNL 350

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.9 bits (106), Expect = 3e-05
 Identities = 23/98 (23%), Positives = 38/98 (38%), Gaps = 7/98 (7%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
           P     +  LT L +   DL    +P GI  N   L  L +S NN   +    ++  + L
Sbjct: 116 PHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSL 173

Query: 100 SKIFLKDCKMLQNLP-RLPASIHGIFLDGCVSLETLSD 136
             + L   + L ++   L  S+    +     L TL+ 
Sbjct: 174 QNLQLSSNR-LTHVDLSLIPSLFHANVSYN-LLSTLAI 209

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 41.1 bits (96), Expect = 5e-04
 Identities = 14/103 (13%), Positives = 33/103 (32%), Gaps = 10/103 (9%)

Query: 33  SSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS 92
              P    + S+L   C    + I             I  L + + +    +    LPA+
Sbjct: 11  PRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDI-TLNNQKIVTFKNSTMRKLPAA 69

Query: 93  I-YRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
           +     ++  + L D + ++ +          F     +++ L
Sbjct: 70  LLDSFRQVELLNLNDLQ-IEEIDT------YAF-AYAHTIQKL 104

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 40.3 bits (94), Expect = 9e-04
 Identities = 15/94 (15%), Positives = 27/94 (28%), Gaps = 19/94 (20%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
             +     SL  L +S   L    +   +  + SL   ++S N   TL         + +
Sbjct: 164 DDTFQATTSLQNLQLSSNRLTH--VD--LSLIPSLFHANVSYNLLSTLAI----PIAVEE 215

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           +                 I+ +     V L  L 
Sbjct: 216 LDASHNS-----------INVVRGPVNVELTILK 238

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 51.2 bits (123), Expect = 3e-07
 Identities = 23/112 (20%), Positives = 35/112 (31%), Gaps = 19/112 (16%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS 100
             S S    L  LD+S C++ E         L  L  L L+GN   +    S   L+ L 
Sbjct: 49  SYSFSNFSELQWLDLSRCEI-ETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLE 107

Query: 101 KIFLKDCK-------MLQNLPRLPA------SIHGI----FLDGCVSLETLS 135
            +   + K        +  L  L         IH      +     +L  + 
Sbjct: 108 NLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 49.6 bits (119), Expect = 1e-06
 Identities = 16/95 (16%), Positives = 31/95 (32%), Gaps = 9/95 (9%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLS 100
                GL SL  L ++     +  + +   N  +L  L LS      +   ++  L +L 
Sbjct: 441 DGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQ 500

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + +    +          +     +   SL TL 
Sbjct: 501 LLNMSHNNL--------LFLDSSHYNQLYSLSTLD 527

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 47.7 bits (114), Expect = 4e-06
 Identities = 24/146 (16%), Positives = 45/146 (30%), Gaps = 34/146 (23%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSL---------PSSLSGLCSL 51
           + +L  L   G      S   F     +L         L              +  L +L
Sbjct: 79  LHHLSNLILTGNPIQSFSPGSFSGLT-SLEN-------LVAVETKLASLESFPIGQLITL 130

Query: 52  TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ 111
            KL++++  +    +P+   NL +L  + LS N   T+  +                 LQ
Sbjct: 131 KKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVN----------------DLQ 174

Query: 112 NLPRLPASIHGIFLDGCVSLETLSDG 137
            L   P     + +     ++ + D 
Sbjct: 175 FLRENPQVNLSLDMSLN-PIDFIQDQ 199

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.9 bits (112), Expect = 6e-06
 Identities = 27/116 (23%), Positives = 36/116 (31%), Gaps = 20/116 (17%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGE-GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLS 97
            S+      L SL+ LD+S   L   G          SL  L LS N    + A+   L 
Sbjct: 340 GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFMGLE 399

Query: 98  KLSKIFLKD--------CKMLQNLP----------RLPASIHGIFLDGCVSLETLS 135
           +L  +  +              +L                  GIF  G  SL TL 
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIF-LGLTSLNTLK 454

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 46.6 bits (111), Expect = 8e-06
 Identities = 23/114 (20%), Positives = 33/114 (28%), Gaps = 18/114 (15%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSL---------PSSLSGLCSL 51
           + +L  L   G     ++ S       NL         L L               L  L
Sbjct: 447 LTSLNTLKMAGNSFKDNTLSNVFANTTNLT-------FLDLSKCQLEQISWGVFDTLHRL 499

Query: 52  TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLSKIFL 104
             L++S+ +L      S    L SL  L  S N   T    +      L+   L
Sbjct: 500 QLLNMSHNNL-LFLDSSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNL 552

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 24/98 (24%), Positives = 37/98 (37%), Gaps = 14/98 (14%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPA-SIYRLS 97
            +P  +    S   +D+S+  L    + S    N   L+ L LS     T+   + + L 
Sbjct: 25  KVPDDIPS--STKNIDLSFNPLKI--LKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLH 80

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            LS + L     +Q+         G F  G  SLE L 
Sbjct: 81  HLSNLILTGNP-IQSFSP------GSF-SGLTSLENLV 110

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 27/115 (23%), Positives = 40/115 (34%), Gaps = 17/115 (14%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL--PASIYRLS 97
            LPS L GL +L KL +S     E        N  SL  L + GN          +  L 
Sbjct: 292 ELPSGLVGLSTLKKLVLSANKF-ENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLE 350

Query: 98  KLSKIFLKDCKM---------LQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCS 143
            L ++ L    +         L+NL  L      + L       +L    +++C 
Sbjct: 351 NLRELDLSHDDIETSDCCNLQLRNLSHL----QSLNLSYN-EPLSLKTEAFKECP 400

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 50.0 bits (120), Expect = 7e-07
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 11/96 (11%)

Query: 42  PSSLSGLC--SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           P+   GLC  S+  +++           +       L+EL L+  +   LP+ +  LS L
Sbjct: 245 PAVFEGLCEMSVESINLQKHYF-FNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTL 303

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            K+ L   K          ++  I      SL  LS
Sbjct: 304 KKLVLSANKF--------ENLCQISASNFPSLTHLS 331

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 25/96 (26%), Positives = 33/96 (34%), Gaps = 11/96 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA---SIYRLSK 98
             S S   SLT L I             + NL +L EL LS ++  T       +  LS 
Sbjct: 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSH 377

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
           L  + L   +   +L          F   C  LE L
Sbjct: 378 LQSLNLSYNE-PLSLKT------EAF-KECPQLELL 405

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLS 100
            ++ S L +LT LD++ C +          +   L+ L L+ N    +  +       L 
Sbjct: 50  NTTFSRLINLTFLDLTRCQI-YWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALK 108

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            +F     +        +SI  I L    +LE+L 
Sbjct: 109 HLFFIQTGI--------SSIDFIPLHNQKTLESLY 135

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 5/67 (7%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLS 97
           +   +SL  L  L  L +S+CDL    I      +L  +  + LS N   +       LS
Sbjct: 466 IQKTNSLQTLGRLEILVLSFCDLSS--IDQHAFTSLKMMNHVDLSHNRLTSSSIEA--LS 521

Query: 98  KLSKIFL 104
            L  I+L
Sbjct: 522 HLKGIYL 528

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 18/95 (18%), Positives = 30/95 (31%), Gaps = 6/95 (6%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLS 100
             +      L  LD+++  L      S   NL  L+ L+LS +        ++  L  L 
Sbjct: 393 TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ 452

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L+             +     L     LE L 
Sbjct: 453 HLNLQGNH-FPKGNIQKTN----SLQTLGRLEILV 482

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 45.0 bits (107), Expect = 3e-05
 Identities = 13/114 (11%), Positives = 23/114 (20%), Gaps = 19/114 (16%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSL---------PSSLSGLCSL 51
              L  L          + +        L         L              L    +L
Sbjct: 80  QHRLDTLVLTANPLIFMAETALSGPK-ALKH-------LFFIQTGISSIDFIPLHNQKTL 131

Query: 52  TKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFL 104
             L +    +              L+ L    N    L    +  L + + + L
Sbjct: 132 ESLYLGSNHI-SSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSL 184

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/98 (18%), Positives = 33/98 (33%), Gaps = 14/98 (14%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTL-PASIYRLS 97
            +P +L    S   L+ S+  L    I +     L +L  L L+    + +   +     
Sbjct: 26  EIPGTLPN--STECLEFSFNVLPT--IQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQH 81

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           +L  + L     L  +           L G  +L+ L 
Sbjct: 82  RLDTLVLTANP-LIFMAETA-------LSGPKALKHLF 111

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.6 bits (121), Expect = 5e-07
 Identities = 31/137 (22%), Positives = 49/137 (35%), Gaps = 18/137 (13%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
             +  GL +L  L++SY  LGE  + S     L  +  + L  N+   +    ++ L KL
Sbjct: 307 DEAFYGLDNLQVLNLSYNLLGE--LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKL 364

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159
             + L+D   L  +  +P SI  IFL G   L TL                         
Sbjct: 365 QTLDLRDNA-LTTIHFIP-SIPDIFLSGN-KLVTLPKINLT-----------ANLIHLSE 410

Query: 160 NEGSSITISTPPKTYKN 176
           N   ++ I        +
Sbjct: 411 NRLENLDILYFLLRVPH 427

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 48.6 bits (116), Expect = 2e-06
 Identities = 25/139 (17%), Positives = 41/139 (29%), Gaps = 9/139 (6%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFP----INLMRWSSDPMALSLPSSLSGLCSLTKLDI 56
           + NL+ L     K        F        + L         L        L +LT+LD+
Sbjct: 72  LPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLK-DGYFRNLKALTRLDL 130

Query: 57  SYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL 116
           S   +    +    G L SL+ +  S N  F +      L  L    L    +  N   L
Sbjct: 131 SKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE--LEPLQGKTLSFFSLAAN--SL 186

Query: 117 PASIHGIFLDGCVSLETLS 135
            + +   +         + 
Sbjct: 187 YSRVSVDWGKCMNPFRNMV 205

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 46.7 bits (111), Expect = 9e-06
 Identities = 18/95 (18%), Positives = 29/95 (30%), Gaps = 7/95 (7%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASI-YRLSKLS 100
            SS   L  L  L++               NL +L  L L  +  + L       L  L 
Sbjct: 41  ASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLF 100

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           ++ L  C  L +       +   +     +L  L 
Sbjct: 101 ELRLYFCG-LSDA-----VLKDGYFRNLKALTRLD 129

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 16/91 (17%), Positives = 27/91 (29%), Gaps = 13/91 (14%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS------ 92
           L +   L  +  L  L ++       +         SLE+L L  N       +      
Sbjct: 416 LDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDV 475

Query: 93  IYRLSKLSKIFLKDCK-------MLQNLPRL 116
              LS L  ++L           +  +L  L
Sbjct: 476 FEGLSHLQVLYLNHNYLNSLPPGVFSHLTAL 506

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 43.6 bits (103), Expect = 8e-05
 Identities = 19/114 (16%), Positives = 36/114 (31%), Gaps = 11/114 (9%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLM-------RWSSDPMALSLPSSLSGLCSLTK 53
           + +L+ L     + S  S         +L                        GL  L  
Sbjct: 425 VPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQV 484

Query: 54  LDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKD 106
           L +++  L    +P G+  +L +L  L L+ N    L  +    + L  + +  
Sbjct: 485 LYLNHNYLNS--LPPGVFSHLTALRGLSLNSNRLTVLSHNDL-PANLEILDISR 535

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 49.2 bits (118), Expect = 7e-07
 Identities = 23/96 (23%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI-YRLSKL 99
             S      L  LD+S C++    I  G   +L  L  L L+GN   +L       LS L
Sbjct: 45  SYSFFSFPELQVLDLSRCEIQ--TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSL 102

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            K+   +   L +L       +        +L+ L+
Sbjct: 103 QKLVAVETN-LASLE------NFPI-GHLKTLKELN 130

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 31/154 (20%), Positives = 55/154 (35%), Gaps = 27/154 (17%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELHLSGNNFFTLPASIYR-LS 97
           ++  +     +LT L I++C+L    +P   + +L  L  L+LS N   T+  S+   L 
Sbjct: 215 TMTPNCLYGLNLTSLSITHCNLTA--VPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELL 272

Query: 98  KLSKIFLKDCK-------MLQNLPRLP---------ASIHGIFLDGCVSLET--LSDGYW 139
           +L +I L   +         + L  L           ++         +LET  L     
Sbjct: 273 RLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332

Query: 140 R-DCSIVVPGSEIPEWFEYQNNEGSSITISTPPK 172
             DC ++     +       N      T +TP  
Sbjct: 333 ACDCRLL----WVFRRRWRLNFNRQQPTCATPEF 362

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 46.6 bits (111), Expect = 7e-06
 Identities = 19/96 (19%), Positives = 39/96 (40%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
               +    L +L+++   +    +  G   NL +L  L L  N    +P  ++  LS L
Sbjct: 49  QDEFASFPHLEELELNENIVSA--VEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNL 106

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           +K+ + + K +  L         +F     +L++L 
Sbjct: 107 TKLDISENK-IVILLD------YMF-QDLYNLKSLE 134

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.9 bits (109), Expect = 1e-05
 Identities = 27/125 (21%), Positives = 47/125 (37%), Gaps = 20/125 (16%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
            S L  L  L ++ +    L    +       L  L  L++SGN   TL  S++  +  L
Sbjct: 265 GSMLHELLRLQEIQLVGGQLAV--VEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNL 322

Query: 100 SKIFLK------DCKML---QNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSE 150
             + L       DC++L   +   RL  +        C + E +    ++D     P   
Sbjct: 323 ETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPT---CATPEFVQGKEFKD----FPDVL 375

Query: 151 IPEWF 155
           +P +F
Sbjct: 376 LPNYF 380

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 22/110 (20%), Positives = 37/110 (33%), Gaps = 12/110 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPA-SIYRLSKL 99
                 L +L  L++   DL    I       L SLE+L L   N  ++P  ++  L  L
Sbjct: 121 DYMFQDLYNLKSLEVGDNDLVY--ISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGL 178

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGS 149
             + L+    +  +          F      L+ L   +W     + P  
Sbjct: 179 IVLRLRHLN-INAIR------DYSF-KRLYRLKVLEISHWPYLDTMTPNC 220

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/95 (15%), Positives = 30/95 (31%), Gaps = 10/95 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR-LSKLS 100
             S   L  L  L+IS+    +  +        +L  L ++  N   +P    R L  L 
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLD-TMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLR 251

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L     +  +         +     + L+ + 
Sbjct: 252 FLNLSYNP-ISTIEG------SML-HELLRLQEIQ 278

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 49.6 bits (119), Expect = 8e-07
 Identities = 22/109 (20%), Positives = 39/109 (35%), Gaps = 16/109 (14%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++   S + L  +T L      +       G+  L +L +++ S N    +   +  L+K
Sbjct: 36  VTDTVSQTDLDQVTTLQADRLGI---KSIDGVEYLNNLTQINFSNNQLTDITP-LKNLTK 91

Query: 99  LSKIFLKDCK--------MLQNLPRLPAS---IHGI-FLDGCVSLETLS 135
           L  I + + +         L NL  L      I  I  L    +L  L 
Sbjct: 92  LVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 30/147 (20%), Positives = 50/147 (34%), Gaps = 41/147 (27%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           + NL ELS  G +                         L    +L+ L +LT LD++   
Sbjct: 220 LTNLDELSLNGNQ-------------------------LKDIGTLASLTNLTDLDLANNQ 254

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK--------MLQN 112
           +      + +  L  L EL L  N    +   +  L+ L+ + L + +         L+N
Sbjct: 255 ISN---LAPLSGLTKLTELKLGANQISNISP-LAGLTALTNLELNENQLEDISPISNLKN 310

Query: 113 LPRLPAS---IHGI-FLDGCVSLETLS 135
           L  L      I  I  +     L+ L 
Sbjct: 311 LTYLTLYFNNISDISPVSSLTKLQRLF 337

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 48.0 bits (115), Expect = 2e-06
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 14/97 (14%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++    L+ L +L +LDIS   + +    S +  L +LE L  + N    +   +  L+ 
Sbjct: 167 VTDLKPLANLTTLERLDISSNKVSD---ISVLAKLTNLESLIATNNQISDITP-LGILTN 222

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L ++ L   + L+++           L    +L  L 
Sbjct: 223 LDELSLNGNQ-LKDIG---------TLASLTNLTDLD 249

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/93 (21%), Positives = 40/93 (43%), Gaps = 14/93 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           + L  L +L +L ++   L +      + +L +L +L L+ N    L   +  L+KL+++
Sbjct: 215 TPLGILTNLDELSLNGNQLKD---IGTLASLTNLTDLDLANNQISNLAP-LSGLTKLTEL 270

Query: 103 FLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            L   + + N+           L G  +L  L 
Sbjct: 271 KLGANQ-ISNIS---------PLAGLTALTNLE 293

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 46.5 bits (111), Expect = 7e-06
 Identities = 21/138 (15%), Positives = 44/138 (31%), Gaps = 17/138 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           L   S +S L +LT L + + ++ +    S + +L  L+ L    N    +  S+  L+ 
Sbjct: 299 LEDISPISNLKNLTYLTLYFNNISD---ISPVSSLTKLQRLFFYNNKVSDVS-SLANLTN 354

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ 158
           ++ +     + + +L           L     +  L      D +               
Sbjct: 355 INWLSAGHNQ-ISDLT---------PLANLTRITQL---GLNDQAWTNAPVNYKANVSIP 401

Query: 159 NNEGSSITISTPPKTYKN 176
           N   +       P T  +
Sbjct: 402 NTVKNVTGALIAPATISD 419

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.7 bits (109), Expect = 1e-05
 Identities = 25/108 (23%), Positives = 44/108 (40%), Gaps = 15/108 (13%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++  + L+ L +LT L +    + +      + NL +L  L LS N    +  ++  L+ 
Sbjct: 102 IADITPLANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLELSSNTISDIS-ALSGLTS 157

Query: 99  LSKIFL----KDCKMLQNLPRLPA------SIHGI-FLDGCVSLETLS 135
           L ++       D K L NL  L         +  I  L    +LE+L 
Sbjct: 158 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAKLTNLESLI 205

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 10/93 (10%), Positives = 29/93 (31%), Gaps = 14/93 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
            + + L    K  +   ++ +        +L  +  L        ++   +  L+ L++I
Sbjct: 18  FTDTALAEKMKTVLGKTNVTD---TVSQTDLDQVTTLQADRLGIKSIDG-VEYLNNLTQI 73

Query: 103 FLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
              + + L ++           L     L  + 
Sbjct: 74  NFSNNQ-LTDIT---------PLKNLTKLVDIL 96

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 49.1 bits (117), Expect = 1e-06
 Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 12/98 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI-YRL 96
           L    + + L +L  L +S+  L    I S     + +L  L LS N+  TL   +   L
Sbjct: 54  LRAEWTPTRLTNLHSLLLSHNHLN--FISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDL 111

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
             L  + L +   +  + R        F +    L+ L
Sbjct: 112 QALEVLLLYNNH-IVVVDR------NAF-EDMAQLQKL 141

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 40.6 bits (95), Expect = 5e-04
 Identities = 22/101 (21%), Positives = 39/101 (38%), Gaps = 17/101 (16%)

Query: 40  SLPS-SLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY--- 94
           +L     S L +L  L +    +    +      ++  L++L+LS N     P  +    
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV--VVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDG 159

Query: 95  -RLSKLSKIFLKDCKM-------LQNLPRLPASIHGIFLDG 127
            +L KL  + L   K+       LQ LP      +G++L  
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAW--VKNGLYLHN 198

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 28/97 (28%), Positives = 38/97 (39%), Gaps = 12/97 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI--YRLSK 98
             S S L SL  LD+SY  L    + S     L SL  L+L GN + TL  +     L+K
Sbjct: 93  EDSFSSLGSLEHLDLSYNYLS--NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTK 150

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  + + +      +          F  G   LE L 
Sbjct: 151 LQILRVGNMDTFTKIQ------RKDF-AGLTFLEELE 180

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 44.7 bits (106), Expect = 2e-05
 Identities = 21/143 (14%), Positives = 49/143 (34%), Gaps = 16/143 (11%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFP-INLMRWSSDPMALSLPSSLSGLCSLTKLDISYC 59
           +  L+EL                    ++ +        L L   +    S+  L++   
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232

Query: 60  DLGE---GAIPSGI----GNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQN 112
           DL       + +G         +   + ++  + F +   + ++S L ++     + L++
Sbjct: 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKS 291

Query: 113 LPRLPASIHGIFLDGCVSLETLS 135
           +P       GIF D   SL+ + 
Sbjct: 292 VPD------GIF-DRLTSLQKIW 307

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.7 bits (114), Expect = 2e-06
 Identities = 23/95 (24%), Positives = 38/95 (40%), Gaps = 13/95 (13%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLS 100
             +  G+  L+ + I+  ++    IP G+    SL ELHL GN    + A S+  L+ L+
Sbjct: 164 NGAFQGMKKLSYIRIADTNITT--IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLA 219

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           K+ L     +  +        G        L  L 
Sbjct: 220 KLGLSFNS-ISAVDN------GSL-ANTPHLRELH 246

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 47.3 bits (113), Expect = 4e-06
 Identities = 20/95 (21%), Positives = 38/95 (40%), Gaps = 5/95 (5%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
            +SL GL +L KL +S+  +    + +G   N   L ELHL+ N    +P  +     + 
Sbjct: 209 AASLKGLNNLAKLGLSFNSISA--VDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQ 266

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++L +   +  +          +     S   +S
Sbjct: 267 VVYLHNNN-ISAIGS-NDFCPPGYNTKKASYSGVS 299

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 19/96 (19%), Positives = 33/96 (34%), Gaps = 7/96 (7%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
              L     L +L + +  +    I +G    L +L ELHL  N    +PA +  L  L 
Sbjct: 210 LEDLLRYSKLYRLGLGHNQIRM--IENGSLSFLPTLRELHLDNNKLSRVPAGLPDLKLLQ 267

Query: 101 KIFLKDCKMLQNLPRLPASIHGI-FLDGCVSLETLS 135
            ++L     +  +         + F         +S
Sbjct: 268 VVYLHTNN-ITKVG--VNDFCPVGFGVKRAYYNGIS 300

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 46.9 bits (112), Expect = 4e-06
 Identities = 18/110 (16%), Positives = 32/110 (29%), Gaps = 18/110 (16%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
               SGL ++  +++    L       G  +   L  L +S      +P  +     L++
Sbjct: 140 KGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDL--PETLNE 197

Query: 102 IFLKDCK-------MLQNLPRL---------PASIHGIFLDGCVSLETLS 135
           + L   K        L    +L            I    L    +L  L 
Sbjct: 198 LHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELH 247

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 41.5 bits (98), Expect = 3e-04
 Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 13/94 (13%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
                GL  L  L +    + +  I       L  L++L++S N+   +P ++   S L 
Sbjct: 71  KDDFKGLQHLYALVLVNNKISK--IHEKAFSPLRKLQKLYISKNHLVEIPPNL--PSSLV 126

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETL 134
           ++ + D + ++ +P+      G+F  G  ++  +
Sbjct: 127 ELRIHDNR-IRKVPK------GVF-SGLRNMNCI 152

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 47.8 bits (114), Expect = 4e-06
 Identities = 23/96 (23%), Positives = 34/96 (35%), Gaps = 11/96 (11%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
              L    +L  L +    +    I      +L SLE L LS N+  +L +S +  LS L
Sbjct: 43  HGDLRACANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             + L      Q L                +L+TL 
Sbjct: 101 KYLNLMGNP-YQTLG------VTSLFPNLTNLQTLR 129

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 2e-05
 Identities = 18/96 (18%), Positives = 35/96 (36%), Gaps = 17/96 (17%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
            +P S      +  L++S   +    + + I    +LE L +S NN  +       L +L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRV--VKTCI--PQTLEVLDVSNNNLDSFSL---FLPRL 453

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++++   K L+ LP                L  + 
Sbjct: 454 QELYISRNK-LKTLPD------ASLFP---VLLVMK 479

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 45.1 bits (107), Expect = 3e-05
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 18/112 (16%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL--PASIYRLSKL 99
            S    L SL  L++         + S   NL +L+ L +     F+         L+ L
Sbjct: 91  SSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSL 150

Query: 100 SKIFLKDCKM-------LQNLPRLP---------ASIHGIFLDGCVSLETLS 135
           +++ +K   +       L+++  +          A +  IF D   S+  L 
Sbjct: 151 NELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLE 202

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 4/101 (3%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGE-GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLS 97
           L   +      SL  L +S   L         +  L +L  L +S N F  +P S     
Sbjct: 351 LKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPDSCQWPE 410

Query: 98  KLSKIFLKDCKMLQNLPR-LPASIHGIFLDGCVSLETLSDG 137
           K+  + L     ++ +   +P ++  + +    +L++ S  
Sbjct: 411 KMRFLNLSSTG-IRVVKTCIPQTLEVLDVSNN-NLDSFSLF 449

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 17/96 (17%), Positives = 30/96 (31%), Gaps = 5/96 (5%)

Query: 24  PFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG 83
           P     +        L           +  L +++ DL        +  L  +  L LS 
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTV---LCHLEQLLLVTHLDLSH 472

Query: 84  NNFFTLPASIYRLSKLSKIFLKDCKM--LQNLPRLP 117
           N    LP ++  L  L  +   D  +  +  +  LP
Sbjct: 473 NRLRALPPALAALRCLEVLQASDNALENVDGVANLP 508

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 46.1 bits (110), Expect = 7e-06
 Identities = 22/96 (22%), Positives = 36/96 (37%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
           P    GL +L  L +    L    +P     +L +L  L L GN   ++P   +R L  L
Sbjct: 122 PGLFRGLAALQYLYLQDNALQA--LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSL 179

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++ L   + + ++          F      L TL 
Sbjct: 180 DRLLLHQNR-VAHVHP------HAF-RDLGRLMTLY 207

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 18/77 (23%), Positives = 27/77 (35%), Gaps = 10/77 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-LSKL 99
             +  GL SL +L +    +    +      +L  L  L+L  NN   LP      L  L
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVA--HVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 100 SKIFLK------DCKML 110
             + L       DC+  
Sbjct: 228 QYLRLNDNPWVCDCRAR 244

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 43.8 bits (104), Expect = 4e-05
 Identities = 24/97 (24%), Positives = 36/97 (37%), Gaps = 13/97 (13%)

Query: 42  PSSLSGLCSLTKLDISY-CDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI-YRLSK 98
            ++ +GL  L +LD+S    L    +       L  L  LHL       L   +   L+ 
Sbjct: 73  AAAFTGLALLEQLDLSDNAQLRS--VDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAA 130

Query: 99  LSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
           L  ++L+D   LQ LP         F     +L  L 
Sbjct: 131 LQYLYLQDNA-LQALP------DDTF-RDLGNLTHLF 159

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 46.2 bits (110), Expect = 1e-05
 Identities = 29/137 (21%), Positives = 47/137 (34%), Gaps = 28/137 (20%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
             S   L +LT LD     + +    +GI  L  L +L  + NN  TL  S  + + L+ 
Sbjct: 35  TISEEQLATLTSLDCHNSSITD---MTGIEKLTGLTKLICTSNNITTLDLS--QNTNLTY 89

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCS----IVVPGSEIP--EWF 155
           +     K L NL           +     L  L      +C       +  S+ P   + 
Sbjct: 90  LACDSNK-LTNLD----------VTPLTKLTYL------NCDTNKLTKLDVSQNPLLTYL 132

Query: 156 EYQNNEGSSITISTPPK 172
               N  + I +S   +
Sbjct: 133 NCARNTLTEIDVSHNTQ 149

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 11/78 (14%)

Query: 44  SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIF 103
            ++    L  LD     + E  +   +     L  L+L+      L  S    +KL  + 
Sbjct: 292 DVTHNTQLYLLDCQAAGITE--LD--LSQNPKLVYLYLNNTELTELDVS--HNTKLKSLS 345

Query: 104 -----LKDCKMLQNLPRL 116
                ++D   +  +P L
Sbjct: 346 CVNAHIQDFSSVGKIPAL 363

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 19/135 (14%), Positives = 35/135 (25%), Gaps = 21/135 (15%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
              L  L+      +    S        L               ++    LT LD S+  
Sbjct: 126 NPLLTYLNCARNTLTEIDVSHN----TQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNK 181

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASI 120
           + E  +   +     L  L+   NN   L  +  +  +L+ +     K L  +       
Sbjct: 182 ITE--LD--VSQNKLLNRLNCDTNNITKLDLN--QNIQLTFLDCSSNK-LTEID------ 228

Query: 121 HGIFLDGCVSLETLS 135
               +     L    
Sbjct: 229 ----VTPLTQLTYFD 239

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 41.6 bits (98), Expect = 3e-04
 Identities = 24/103 (23%), Positives = 30/103 (29%), Gaps = 17/103 (16%)

Query: 44  SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIF 103
            L+    LT LD S   L E  I   +  L  L     S N    L  S   LSKL+ + 
Sbjct: 207 DLNQNIQLTFLDCSSNKLTE--ID--VTPLTQLTYFDCSVNPLTELDVST--LSKLTTLH 260

Query: 104 LKDCK-------MLQNLPRLPAS----IHGIFLDGCVSLETLS 135
                           L    A     I  + +     L  L 
Sbjct: 261 CIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLD 303

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 46.3 bits (110), Expect = 1e-05
 Identities = 26/96 (27%), Positives = 32/96 (33%), Gaps = 9/96 (9%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKL 99
            +S S L  L  L +     G   I +     L SL  L L  N F  L    +  L+ L
Sbjct: 47  ETSFSRLQDLQFLKVEQQTPGL-VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANL 105

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             + L  C  L     L       F     SLE L 
Sbjct: 106 EVLTLTQCN-LDGAV-LS---GNFF-KPLTSLEMLV 135

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 21/99 (21%), Positives = 42/99 (42%), Gaps = 13/99 (13%)

Query: 40  SLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYR-L 96
           +L  S+ S    L +L ++  ++ +  I       L  L +L+LS N   ++ + ++  L
Sbjct: 289 ALLKSVFSHFTDLEQLTLAQNEINK--IDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENL 346

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            KL  + L     ++ L          F  G  +L+ L+
Sbjct: 347 DKLEVLDLSYNH-IRALG------DQSF-LGLPNLKELA 377

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 26/85 (30%), Positives = 38/85 (44%), Gaps = 11/85 (12%)

Query: 40  SLPS-SLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RL 96
           S+ S     L  L  LD+SY  +   A+       L +L+EL L  N   ++P  I+ RL
Sbjct: 337 SIDSRMFENLDKLEVLDLSYNHIR--ALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRL 394

Query: 97  SKLSKIFLK------DCKMLQNLPR 115
           + L KI+L        C  +  L R
Sbjct: 395 TSLQKIWLHTNPWDCSCPRIDYLSR 419

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 19/127 (14%), Positives = 34/127 (26%), Gaps = 32/127 (25%)

Query: 40  SLPSS-LSGLCSLTKLDISYCDLGEGAIPSGI--------------------------GN 72
            L +   +GL +L  L ++ C+L    +                               N
Sbjct: 93  QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152

Query: 73  LCSLEELHLSGNNFFTLPASI-YRLSKLSKIFLK-DCKMLQNLPR--LPASIHGIFLDGC 128
           +     L L+ N   ++               L+     LQ++    L     G      
Sbjct: 153 MRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNP-FKN 211

Query: 129 VSLETLS 135
            S+ TL 
Sbjct: 212 TSITTLD 218

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 44.6 bits (106), Expect = 1e-05
 Identities = 24/96 (25%), Positives = 34/96 (35%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI-YRLSKL 99
           P + S    L ++D+S   +    +       L SL  L L GN    LP S+   L  L
Sbjct: 49  PGAFSPYKKLRRIDLSNNQIS--ELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSL 106

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             + L   K +  L          F     +L  LS
Sbjct: 107 QLLLLNANK-INCLRV------DAF-QDLHNLNLLS 134

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           SSL  L  L  L + +  + +  I +G+ +L  LE L+L  N    +   + RL+KL  +
Sbjct: 103 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDIT-VLSRLTKLDTL 158

Query: 103 FLKDCKM-----LQNLPRL 116
            L+D ++     L  L +L
Sbjct: 159 SLEDNQISDIVPLAGLTKL 177

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 42.0 bits (98), Expect = 3e-04
 Identities = 28/105 (26%), Positives = 42/105 (40%), Gaps = 16/105 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
             +  L ++TKL ++   L +  I   + NL +L  L L  N    L  S+  L KL  +
Sbjct: 59  QGIQYLPNVTKLFLNGNKLTD--I-KPLTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSL 114

Query: 103 FLKDCKM--LQNLPRLPA---------SIHGI-FLDGCVSLETLS 135
            L+   +  +  L  LP           I  I  L     L+TLS
Sbjct: 115 SLEHNGISDINGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLS 159

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.9 bits (95), Expect = 6e-04
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 11/82 (13%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           + LS L  L  L +    + +  I   +  L  L+ L+LS N+   L A +  L  L  +
Sbjct: 147 TVLSRLTKLDTLSLEDNQISD--I-VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNLDVL 202

Query: 103 FL-------KDCKMLQNLPRLP 117
            L       K      NL    
Sbjct: 203 ELFSQECLNKPINHQSNLVVPN 224

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 40.5 bits (94), Expect = 8e-04
 Identities = 19/105 (18%), Positives = 38/105 (36%), Gaps = 16/105 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
                     K ++    + +         L S++++  + ++  ++   I  L  ++K+
Sbjct: 15  FPDDAFAETIKDNLKKKSVTD---AVTQNELNSIDQIIANNSDIKSVQG-IQYLPNVTKL 70

Query: 103 FL-----KDCKMLQNLPRLPA------SIHGI-FLDGCVSLETLS 135
           FL      D K L NL  L         I  +  L     L++LS
Sbjct: 71  FLNGNKLTDIKPLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLS 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.7 bits (105), Expect = 2e-05
 Identities = 23/136 (16%), Positives = 37/136 (27%), Gaps = 14/136 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
              L GL  L  L I    L    +          L  L+LS N   +L     +   L 
Sbjct: 49  LRDLRGLGELRNLTIVKSGLR--FVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQ 106

Query: 101 KIFLK------DCKM--LQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIP 152
           ++ L        C +  LQ                C     L+      C +     ++P
Sbjct: 107 ELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVP 166

Query: 153 EWFEYQNNEGSSITIS 168
                  + G  + + 
Sbjct: 167 ---NASVDVGDDVLLR 179

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 14/88 (15%), Positives = 23/88 (26%), Gaps = 16/88 (18%)

Query: 2   KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDL 61
           K+L+   F                    ++         L  +L     L  + +S    
Sbjct: 60  KDLEIAEFSDIF-------------TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF 106

Query: 62  G-EGAIP--SGIGNLCSLEELHLSGNNF 86
           G     P    +     LE L+L  N  
Sbjct: 107 GPTAQEPLIDFLSKHTPLEHLYLHNNGL 134

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 14/81 (17%), Positives = 26/81 (32%), Gaps = 9/81 (11%)

Query: 38  ALSLPSSLSGLCSLTKLDISYCDLG-EGA---IPSGIGNLCSLEELHLSGNNF-----FT 88
                 +      L  + +    +  EG    +  G+     L+ L L  N F       
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 89  LPASIYRLSKLSKIFLKDCKM 109
           L  ++     L ++ L DC +
Sbjct: 236 LAIALKSWPNLRELGLNDCLL 256

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 14/109 (12%)

Query: 38  ALSLPSSLSGLCSLTKLDISYCDLG-EGA--IPSGIGNLCSLEELHLSGNNFFTLPASIY 94
             S+ + L    S+ ++ +S   +G E A  +   I +   LE    S      +   I 
Sbjct: 21  EKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIP 80

Query: 95  R-LSKLSKIFLKDCKMLQNLPRL------PASIHGI--FLDGCVSLETL 134
             L  L +  L  C  L  + RL      P +   +  FL     LE L
Sbjct: 81  EALRLLLQA-LLKCPKLHTV-RLSDNAFGPTAQEPLIDFLSKHTPLEHL 127

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 21/82 (25%), Positives = 32/82 (39%), Gaps = 15/82 (18%)

Query: 43  SSLSGLCSLTKLDISYC---DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           S L+GL +L  L I      DL      + + NL  L  L    N    +   +  L  L
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDL------TPLANLSKLTTLKADDNKISDISP-LASLPNL 197

Query: 100 SKIFLKDCKM-----LQNLPRL 116
            ++ LK+ ++     L N   L
Sbjct: 198 IEVHLKNNQISDVSPLANTSNL 219

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 20/106 (18%), Positives = 38/106 (35%), Gaps = 16/106 (15%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
             + + L  +T L      +    I  G+  L +L  L L  N    L   +  L+K+++
Sbjct: 34  TVTQADLDGITTLSAFGTGVTT--I-EGVQYLNNLIGLELKDNQITDLAP-LKNLTKITE 89

Query: 102 IFLKDCKM-----LQNLPRLPA------SIHGI-FLDGCVSLETLS 135
           + L    +     +  L  +         I  +  L G  +L+ L 
Sbjct: 90  LELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLY 135

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 19/79 (24%), Positives = 33/79 (41%), Gaps = 9/79 (11%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           + L  L  +T+L++S   L      S I  L S++ L L+      +   +  LS L  +
Sbjct: 79  APLKNLTKITELELSGNPLKN---VSAIAGLQSIKTLDLTSTQITDVTP-LAGLSNLQVL 134

Query: 103 FLKDCKM-----LQNLPRL 116
           +L   ++     L  L  L
Sbjct: 135 YLDLNQITNISPLAGLTNL 153

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 44.5 bits (105), Expect = 4e-05
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 9/141 (6%)

Query: 2   KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDL 61
           +     S     G P      +          S      +P        + KLD+ Y  L
Sbjct: 246 EEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL 305

Query: 62  GEGAIPSGIGNLCSLEELHLSGNNFFT---LPASIYRLSKLSKIFLKDCKMLQNLPRLPA 118
                 + I    +LE L     N      L        +L ++ ++     Q +     
Sbjct: 306 ETEDHCTLIQKCPNLEVLETR--NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEG 363

Query: 119 SI--HGI--FLDGCVSLETLS 135
            +   G+     GC  LE ++
Sbjct: 364 LVSQRGLIALAQGCQELEYMA 384

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 43.1 bits (102), Expect = 5e-05
 Identities = 18/99 (18%), Positives = 33/99 (33%), Gaps = 12/99 (12%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASI-YRL 96
           L        L  L K++ S   +    I  G       + E+ L+ N    +   +   L
Sbjct: 47  LEATGIFKKLPQLRKINFSNNKIT--DIEEGAFEGASGVNEILLTSNRLENVQHKMFKGL 104

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
             L  + L+  + +  +       +  F  G  S+  LS
Sbjct: 105 ESLKTLMLRSNR-ITCVG------NDSF-IGLSSVRLLS 135

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.9 bits (99), Expect = 1e-04
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 11/80 (13%)

Query: 40  SLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RL 96
           ++   +  GL SL  L +    +    + +     L S+  L L  N   T+    +  L
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT--CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152

Query: 97  SKLSKIFLK------DCKML 110
             LS + L       +C + 
Sbjct: 153 HSLSTLNLLANPFNCNCYLA 172

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 44.1 bits (104), Expect = 6e-05
 Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 3/56 (5%)

Query: 50  SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIY-RLSKLSKIFL 104
            +  LD+    +   +IP  + +L +L+EL+++ N   ++P  ++ RL+ L  I+L
Sbjct: 451 KVKVLDLHNNRIM--SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWL 504

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 17/95 (17%), Positives = 29/95 (30%), Gaps = 12/95 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
              +S L  L  L +S+  +   ++   +      LE L +S N    +      ++ L 
Sbjct: 69  MPDISFLSELRVLRLSHNRIR--SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMASLR 124

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L        LP         F      L  L 
Sbjct: 125 HLDL-SFNDFDVLPV-----CKEF-GNLTKLTFLG 152

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 43.8 bits (104), Expect = 6e-05
 Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 13/99 (13%)

Query: 1   MKNLKELSFRGCKGSPSSASWF---LPFPINL----MRWS--SDPMALSLPSSL-SGLCS 50
           ++  + +    C  + +        L     L    +R +   D     +   L +  C 
Sbjct: 27  LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86

Query: 51  LTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNF 86
           + KL +  C L     G + S +  L +L+ELHLS N  
Sbjct: 87  IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLL 125

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 40.3 bits (95), Expect = 7e-04
 Identities = 10/41 (24%), Positives = 13/41 (31%), Gaps = 3/41 (7%)

Query: 49  CSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNF 86
           C L  L +  C           S +     L EL +S N  
Sbjct: 313 CQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRL 353

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 39.9 bits (94), Expect = 9e-04
 Identities = 13/45 (28%), Positives = 18/45 (40%), Gaps = 3/45 (6%)

Query: 45  LSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNF 86
           L     L  L I  C +     G +   +    SL+EL L+GN  
Sbjct: 252 LHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 42.7 bits (101), Expect = 7e-05
 Identities = 28/100 (28%), Positives = 39/100 (39%), Gaps = 9/100 (9%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
            SL  L +L  L I    L        +G L  LE L L GN        + RL K++ I
Sbjct: 122 DSLIHLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITNTG-GLTRLKKVNWI 177

Query: 103 FLKDCK----MLQNLPRLPASIHGIFLDG-CVSLETLSDG 137
            L   K     ++  P L  +      DG  +S   +S+G
Sbjct: 178 DLTGQKCVNEPVKYQPELYITNTVKDPDGRWISPYYISNG 217

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score = 43.3 bits (102), Expect = 8e-05
 Identities = 19/95 (20%), Positives = 28/95 (29%), Gaps = 12/95 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
            S +  L  L  L IS+  +    +   +      LE L LS N    +    +    L 
Sbjct: 38  TSDILSLSKLRILIISHNRIQ--YLDISVFKFNQELEYLDLSHNKLVKIS--CHPTVNLK 93

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L        LP         F      L+ L 
Sbjct: 94  HLDLSFNA-FDALPIC-----KEF-GNMSQLKFLG 121

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score = 42.9 bits (101), Expect = 8e-05
 Identities = 31/145 (21%), Positives = 55/145 (37%), Gaps = 17/145 (11%)

Query: 2   KNLKELSFRGCKGSPSSASWFLPFP----INLMRWSSDPMALSLPSSLSGLCSLTKLDIS 57
             L+ LS  G + S    +          +NL    S     +L + LS    L +L++S
Sbjct: 118 SKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL-SGCSGFSEFALQTLLSSCSRLDELNLS 176

Query: 58  YC-DLGEGAIPSGIGNLC-SLEELHLSGNNFF----TLPASIYRLSKLSKIFLKDCKM-- 109
           +C D  E  +   + ++  ++ +L+LSG         L   + R   L  + L D  M  
Sbjct: 177 WCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLK 236

Query: 110 ---LQNLPRLPASIHGIFLDGCVSL 131
               Q   +L   +  + L  C  +
Sbjct: 237 NDCFQEFFQLN-YLQHLSLSRCYDI 260

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.7 bits (101), Expect = 8e-05
 Identities = 23/79 (29%), Positives = 39/79 (49%), Gaps = 9/79 (11%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
           SSL  L  L  L + +  + +  I +G+ +L  LE L+L  N    +   + RL+KL  +
Sbjct: 106 SSLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLYLGNNKITDITV-LSRLTKLDTL 161

Query: 103 FLKDCKM-----LQNLPRL 116
            L+D ++     L  L +L
Sbjct: 162 SLEDNQISDIVPLAGLTKL 180

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 25/105 (23%), Positives = 45/105 (42%), Gaps = 16/105 (15%)

Query: 43  SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI 102
            + + L S+ ++  +  D+    +  GI  L ++ +L L+GN    +   +  L  L  +
Sbjct: 40  VTQNELNSIDQIIANNSDIKS--V-QGIQYLPNVTKLFLNGNKLTDIK-PLANLKNLGWL 95

Query: 103 FL-----KDCKMLQNLPRLPA------SIHGI-FLDGCVSLETLS 135
           FL     KD   L++L +L +       I  I  L     LE+L 
Sbjct: 96  FLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLY 140

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 25/105 (23%), Positives = 37/105 (35%), Gaps = 21/105 (20%)

Query: 43  SSLSGLCSLTKLDISYC---DLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           + LS L  L  L +      D+        +  L  L+ L+LS N+   L A +  L  L
Sbjct: 150 TVLSRLTKLDTLSLEDNQISDI------VPLAGLTKLQNLYLSKNHISDLRA-LAGLKNL 202

Query: 100 SKIFLKDCK-------MLQNLPRLPASIHGIFLDG-CVSLETLSD 136
             + L   +          NL            DG  V+ E +SD
Sbjct: 203 DVLELFSQECLNKPINHQSNLVVPNTV---KNTDGSLVTPEIISD 244

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 41.8 bits (98), Expect = 2e-04
 Identities = 20/95 (21%), Positives = 32/95 (33%), Gaps = 12/95 (12%)

Query: 41  LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLS 100
             +  +    L  LD+S+  L + A          L  L+LS      +P  +   +KLS
Sbjct: 220 CSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGL--PAKLS 277

Query: 101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L   + L   P           D    +  LS
Sbjct: 278 VLDLSYNR-LDRNP---------SPDELPQVGNLS 302

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 42.0 bits (99), Expect = 2e-04
 Identities = 10/46 (21%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 45  LSGLCSLTKLDISYCDLGEG---AIPSGI-GNLCSLEELHLSGNNF 86
           L       KL +    LG      +   +  + C +  L LS N  
Sbjct: 122 LPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPL 167

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 9/41 (21%), Positives = 14/41 (34%), Gaps = 3/41 (7%)

Query: 49  CSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNF 86
           C +T L +S   L       +  G+    S+  L L     
Sbjct: 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGL 195

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 25/52 (48%), Gaps = 3/52 (5%)

Query: 38  ALSLPSSLSGLCSLTKLDISYCDLG-EGA--IPSGIGNLCSLEELHLSGNNF 86
              L   L+G  S+T L + +  LG EG   + + +     L+EL+++ N  
Sbjct: 172 VAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGA 223

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 40.9 bits (96), Expect = 4e-04
 Identities = 14/52 (26%), Positives = 21/52 (40%), Gaps = 3/52 (5%)

Query: 38  ALSLPSSLSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNF 86
              L + L     L +L+++Y   G+    A+        SLE LHL  N  
Sbjct: 200 LELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 42.2 bits (99), Expect = 2e-04
 Identities = 19/138 (13%), Positives = 45/138 (32%), Gaps = 19/138 (13%)

Query: 3   NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLG 62
            ++ +  +G             +   +  W        + +  S    L ++ +    + 
Sbjct: 67  KVRSVELKGKPHFADFNLVPDGWGGYVYPW--------IEAMSSSYTWLEEIRLKRMVVT 118

Query: 63  EGAIPSGIGNLCSLEELHLSGNNFFT---LPASIYRLSKLSKIFLKDCKMLQNLPRLPAS 119
           +  +     +  + + L LS    F+   L A       L ++ L++  +         S
Sbjct: 119 DDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDV------S 172

Query: 120 IHGI--FLDGCVSLETLS 135
            H +  F D   SL +L+
Sbjct: 173 GHWLSHFPDTYTSLVSLN 190

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 41.0 bits (96), Expect = 5e-04
 Identities = 15/108 (13%), Positives = 36/108 (33%), Gaps = 12/108 (11%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFT--LPASIYRLS 97
                 +    +  L +++    +  +   +    SL +L +    F    L A+  +L 
Sbjct: 447 VFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLE 506

Query: 98  KLSKIFLKDCKM--------LQNLPRLPASIHGIFLDGCVSLETLSDG 137
            +  +++  C +         Q +P+L  ++  I   G       S  
Sbjct: 507 TMRSLWMSSCSVSFGACKLLGQKMPKL--NVEVIDERGAPDSRPESCP 552

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 40.7 bits (95), Expect = 7e-04
 Identities = 23/144 (15%), Positives = 45/144 (31%), Gaps = 10/144 (6%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFP-------INLMRWSSDPMALSLPSSLSGLCSLTK 53
              L+EL   G         +            +  +    D +   LP+  S    LT 
Sbjct: 234 APQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTT 293

Query: 54  LDISYCDLGEGAIPSGIGNLCSLEELHLSGN-NFFTLPASIYRLSKLSKIFLKDCKMLQN 112
           L++SY  +    +   +     L+ L +        L         L ++ +   +    
Sbjct: 294 LNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVM 353

Query: 113 LPRLPASIHGI--FLDGCVSLETL 134
            P +  +  G+     GC  LE++
Sbjct: 354 EPNVALTEQGLVSVSMGCPKLESV 377

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 41.1 bits (97), Expect = 2e-04
 Identities = 22/127 (17%), Positives = 38/127 (29%), Gaps = 32/127 (25%)

Query: 42  PSSLSGLCSLTKLDISYCDLGE------------------------GAIPSGI-GNLCS- 75
           P +L  L  L  L I    L                           +IP      LC+ 
Sbjct: 98  PDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNE 157

Query: 76  LEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-----LPASIHGIFLDGCVS 130
              L L  N F ++    +  +KL  ++L   K L  + +     + +    + +    S
Sbjct: 158 TLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT-S 216

Query: 131 LETLSDG 137
           +  L   
Sbjct: 217 VTALPSK 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 18/89 (20%), Positives = 34/89 (38%), Gaps = 12/89 (13%)

Query: 50  SLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFT-LPASI-YRLSKLSKIFLKD 106
           S   L +    L    IPS    NL ++  +++S +     L +   Y LSK++ I +++
Sbjct: 32  STQTLKLIETHLRT--IPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 107 CKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            + L  +                 L+ L 
Sbjct: 90  TRNLTYIDP------DAL-KELPLLKFLG 111

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 15/108 (13%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLS 97
            +P  LS    LT +D+S   +    + +    N+  L  L LS N    +P   +  L 
Sbjct: 45  LVPKELSNYKHLTLIDLSNNRIS--TLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLK 102

Query: 98  KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLET--LSDGYWRDCS 143
            L  + L     +  +P       G F +   +L    +       C 
Sbjct: 103 SLRLLSLHGND-ISVVP------EGAF-NDLSALSHLAIGANPL-YCD 141

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.8 bits (97), Expect = 3e-04
 Identities = 66/414 (15%), Positives = 115/414 (27%), Gaps = 143/414 (34%)

Query: 1   MKNLKELSFR----GCKGSPSSASWFLPFPIN--------LMRWSSDPMALSL------- 41
           ++ L++L ++        S  S++  +   I+        L++       L L       
Sbjct: 199 LEMLQKLLYQIDPNWTSRSDHSSN--IKLRIHSIQAELRRLLKSKPYENCL-LVLLNVQN 255

Query: 42  PSSLSGL---CS--LTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRL 96
             + +     C   LT       D    A  + I    SL+   ++     T        
Sbjct: 256 AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHI----SLDHHSMT----LTPDEV---K 304

Query: 97  SKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC---------------------------V 129
           S L K    DC+  Q+LPR   + +   L                               
Sbjct: 305 SLLLKYL--DCR-PQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 130 SLETLSDG----YWRDCSIVVPGSEIPE------WFEY-------------------QNN 160
           SL  L        +   S+  P + IP       WF+                    +  
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQP 421

Query: 161 EGSSITI--------STPPKTYKNHKLVGYAMCCVFRVPKYSLP-YYNRWSPDPVHMLS- 210
           + S+I+I              Y  H+ +         V  Y++P  ++     P ++   
Sbjct: 422 KESTISIPSIYLELKVKLENEYALHRSI---------VDHYNIPKTFDSDDLIPPYLDQY 472

Query: 211 IYSKPTTSGFSGFEFRKQIGQAMSDHLF-LYYQNRGAISEVEFSSPSGLELKRCGVHPIY 269
            YS        G    K I       LF + + +        F     LE K       +
Sbjct: 473 FYS------HIGHHL-KNIEHPERMTLFRMVFLD------FRF-----LEQKIRHDSTAW 514

Query: 270 VHQGDKFNQTSDPVWNLNEF-GHDCLGSTSFTRSLNDDLD---RAEASGSCCRD 319
              G   N        L  +  + C     + R +N  LD   + E +  C + 
Sbjct: 515 NASGSILNTLQQ----LKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKY 564

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.4 bits (95), Expect = 4e-04
 Identities = 27/96 (28%), Positives = 48/96 (50%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEELHLSGNNFFTLPASIY-RLSKL 99
            ++  GL  LT L++ Y  L    + +G+  +L  L  L L+ N   +LP  ++  L++L
Sbjct: 52  DATFRGLTKLTWLNLDYNQLQ--TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQL 109

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            K++L   + L++LP       G+F D    L+ L 
Sbjct: 110 DKLYLGGNQ-LKSLP------SGVF-DRLTKLKELR 137

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 39.4 bits (92), Expect = 5e-04
 Identities = 12/76 (15%), Positives = 27/76 (35%), Gaps = 8/76 (10%)

Query: 45  LSGLCSLTKLDISYC----DLGEGAIPSGIGNLCSLEELHLSGNNFFT---LPASIYRLS 97
           + GL  + K+ +  C    D     +        S+ E+ +      T   +  +++   
Sbjct: 81  MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR 139

Query: 98  KLSKIFLKDCKMLQNL 113
            L  +FL D   ++  
Sbjct: 140 NLKYLFLSDLPGVKEK 155

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 30/96 (31%), Positives = 49/96 (51%), Gaps = 12/96 (12%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGN-LCSLEELHLSGNNFFTLPASIY-RLSKL 99
                 L SLT+L +    L   ++P+G+ N L SL  L+LS N   +LP  ++ +L++L
Sbjct: 45  NGVFDELTSLTQLYLGGNKLQ--SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQL 102

Query: 100 SKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS 135
            ++ L   + LQ+LP       G+F D    L+ L 
Sbjct: 103 KELALNTNQ-LQSLP------DGVF-DKLTQLKDLR 130

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 40.1 bits (94), Expect = 8e-04
 Identities = 11/42 (26%), Positives = 18/42 (42%), Gaps = 4/42 (9%)

Query: 49  CSLTKLDISYCDLGEG---AIPSGIGNL-CSLEELHLSGNNF 86
            ++T LD+ + D              NL  S+  L+L GN+ 
Sbjct: 109 FTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL 150

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	366
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.7
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.69
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.62
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.61
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.6
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.59
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.59
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.57
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.57
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.55
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.55
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.55
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.54
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.54
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.52
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.52
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.52
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.52
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.51
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.5
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.5
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.5
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.49
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.49
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.49
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.49
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.47
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.47
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.47
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.47
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.46
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.46
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.46
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.46
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.46
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.46
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.46
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.46
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.45
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.45
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.45
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.45
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.45
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	99.45
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.45
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.44
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.43
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.43
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.43
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.43
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.43
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.42
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.42
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.41
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.41
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.41
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.41
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.41
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.4
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.4
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.4
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.4
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.4
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.4
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.39
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	99.39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.39
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.39
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.39
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	99.39
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.39
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.39
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.39
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.39
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.39
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.39
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.38
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.38
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.38
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.38
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	99.37
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.37
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.37
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.37
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.36
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.36
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.36
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.36
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.36
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	99.35
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.35
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.34
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.34
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.34
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.33
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.33
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.33
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	99.32
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.32
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.31
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.3
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.3
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.28
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.28
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	99.28
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.27
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.25
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.23
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.22
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.21
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.14
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.13
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.12
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.05
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.04
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.04
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.01
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.95
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	98.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	98.88
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	98.87
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	98.87
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.7
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	98.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.56
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.48
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	98.33
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	98.32
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.3
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	98.26
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	98.15
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.04
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	97.98
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	97.85
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.8
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.66
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	97.61
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.47
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	97.43
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	97.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	97.22
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.86
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.73
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	96.54
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	96.32
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.08
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	96.01
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	95.59
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	94.72
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.44
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	94.14
3ukw_C	28	Bimax1 peptide; arm repeat, armadillo repeat, nucl	85.3

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.70  E-value=1.2e-16  Score=153.23  Aligned_cols=162  Identities=18%  Similarity=0.254  Sum_probs=107.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCC--------
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGN--------   72 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~--------   72 (366)
                      |++|++|+|++|.+.........+.+|+.|++++|.+. .+|..+..+++|+.|+|++|++. +.+|..++.        
T Consensus       103 l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~-~~~p~~~~~~~~~~~~~  180 (328)
T 4fcg_A          103 LSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPEL-TELPEPLASTDASGEHQ  180 (328)
T ss_dssp             GTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTC-CCCCSCSEEEC-CCCEE
T ss_pred             CCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCc-cccChhHhhccchhhhc
Confidence            46788888888886633333455677888888888887 78888888888888888888777 777776654        


Q ss_pred             -CCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCC-C--CcccceecccCCc-------------CccEee
Q 040119           73 -LCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPR-L--PASIHGIFLDGCV-------------SLETLS  135 (366)
Q Consensus        73 -L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~-l--p~~L~~L~~~~c~-------------sL~~l~  135 (366)
                       +++|+.|+|++|.++.+|..+.++++|+.|+|++|++.+ +|. +  .++|+.|++++|.             +|+.|+
T Consensus       181 ~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~  259 (328)
T 4fcg_A          181 GLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLI  259 (328)
T ss_dssp             ESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEE
T ss_pred             cCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEE
Confidence             777888888777777777777777777777777777553 332 1  1245555554432             333333


Q ss_pred             CCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          136 DGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      ++     .+.+. ..+|.+|....   ++..++|..|.+
T Consensus       260 L~-----~n~~~-~~~p~~~~~l~---~L~~L~L~~n~~  289 (328)
T 4fcg_A          260 LK-----DCSNL-LTLPLDIHRLT---QLEKLDLRGCVN  289 (328)
T ss_dssp             CT-----TCTTC-CBCCTTGGGCT---TCCEEECTTCTT
T ss_pred             CC-----CCCch-hhcchhhhcCC---CCCEEeCCCCCc
Confidence            32     11222 24666666555   666677776655

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.69  E-value=2e-16  Score=151.57  Aligned_cols=167  Identities=23%  Similarity=0.347  Sum_probs=98.1

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCC---------CCCCcEEEeecCCCCCCCCCccCC
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSG---------LCSLTKLDISYCDLGEGAIPSGIG   71 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~---------L~~L~~L~Ls~n~l~~~~lP~~i~   71 (366)
                      |++|++|+|++|.+.........+++|+.|++++|.+.+.+|..+..         +++|+.|+|++|.+..  +|..++
T Consensus       126 l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~--lp~~l~  203 (328)
T 4fcg_A          126 FAGLETLTLARNPLRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS--LPASIA  203 (328)
T ss_dssp             GTTCSEEEEESCCCCCCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCCC--CCGGGG
T ss_pred             cCCCCEEECCCCccccCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcCc--chHhhc
Confidence            35667777777765422223444556777777776666666665543         6677777777776643  666677


Q ss_pred             CCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCCcCccEeeCCCCCCc------
Q 040119           72 NLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGCVSLETLSDGYWRDC------  142 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c~sL~~l~~~~f~~~------  142 (366)
                      .+++|+.|+|++|.++.+|..+..+++|+.|+|++|++.+.+|..   .++|+.|++++|..+..++.. |.++      
T Consensus       204 ~l~~L~~L~L~~N~l~~l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~-~~~l~~L~~L  282 (328)
T 4fcg_A          204 NLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLD-IHRLTQLEKL  282 (328)
T ss_dssp             GCTTCCEEEEESSCCCCCCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTT-GGGCTTCCEE
T ss_pred             CCCCCCEEEccCCCCCcCchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchh-hhcCCCCCEE
Confidence            777777777777777766666777777777777777666666543   235566665554333333221 1110      


Q ss_pred             ---ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          143 ---SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       143 ---~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                         .+.+.| .+|++|....   ++..++++.+.+
T Consensus       283 ~L~~n~~~~-~iP~~l~~L~---~L~~l~l~~~~~  313 (328)
T 4fcg_A          283 DLRGCVNLS-RLPSLIAQLP---ANCIILVPPHLQ  313 (328)
T ss_dssp             ECTTCTTCC-CCCGGGGGSC---TTCEEECCGGGS
T ss_pred             eCCCCCchh-hccHHHhhcc---CceEEeCCHHHH
Confidence               222222 4677766666   556666665554

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.62  E-value=2.4e-15  Score=159.65  Aligned_cols=112  Identities=23%  Similarity=0.267  Sum_probs=79.0

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|......+ .+..+++|+.|++++|.+.+.+|..+.++++|+.|+|++|++. +.+|..++.+++|+.|+
T Consensus       442 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~  520 (768)
T 3rgz_A          442 SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLT-GEIPKWIGRLENLAILK  520 (768)
T ss_dssp             TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEEE
T ss_pred             CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccC-CcCChHHhcCCCCCEEE
Confidence            456666666666443322 2334566777777777777777777777777777777777777 67777777777777777


Q ss_pred             ccCCCCC-ccchhhhCCCCccEEEccCCcCccCCC
Q 040119           81 LSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        81 Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      |++|.++ .+|..+.++++|+.|++++|++.+.+|
T Consensus       521 L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip  555 (768)
T 3rgz_A          521 LSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIP  555 (768)
T ss_dssp             CCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCC
T ss_pred             CCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCC
Confidence            7777777 677777777777777777777776666

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.62  E-value=4e-16  Score=148.32  Aligned_cols=114  Identities=20%  Similarity=0.307  Sum_probs=91.2

Q ss_pred             CCCccEEEeeC-CCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRG-CKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~-n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      |++|++|+|++ |......+ .+..+++|++|++++|.+.+.+|..+..+++|++|+|++|.+. +.+|..++.+++|++
T Consensus        75 l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~  153 (313)
T 1ogq_A           75 LPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALS-GTLPPSISSLPNLVG  153 (313)
T ss_dssp             CTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEE-SCCCGGGGGCTTCCE
T ss_pred             CCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccC-CcCChHHhcCCCCCe
Confidence            57888999985 66443333 3456677888888888888788888888888888888888887 678888888888888


Q ss_pred             EEccCCCCC-ccchhhhCCC-CccEEEccCCcCccCCCC
Q 040119           79 LHLSGNNFF-TLPASIYRLS-KLSKIFLKDCKMLQNLPR  115 (366)
Q Consensus        79 L~Ls~N~~~-~lP~~i~~L~-~L~~L~L~~n~~l~~lp~  115 (366)
                      |+|++|.++ .+|..+..++ +|+.|++++|++.+.+|.
T Consensus       154 L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~  192 (313)
T 1ogq_A          154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPP  192 (313)
T ss_dssp             EECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCG
T ss_pred             EECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCCh
Confidence            888888888 7888888887 888888888887765553

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.61  E-value=1.6e-15  Score=157.96  Aligned_cols=165  Identities=15%  Similarity=0.168  Sum_probs=133.8

Q ss_pred             CCCccEEEeeCCCCCCC-----------------CCC-cC--CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC
Q 040119            1 MKNLKELSFRGCKGSPS-----------------SAS-WF--LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD   60 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-----------------~~~-~~--~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~   60 (366)
                      |++|++|+|++|.+...                 .|. ..  .+.+|+.|++++|.+.+.+|..+.++++|+.|+|++|+
T Consensus       205 l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~  284 (636)
T 4eco_A          205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNR  284 (636)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCT
T ss_pred             ccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCC
Confidence            57999999999997662                 333 33  57889999999999999999999999999999999998


Q ss_pred             -CCCC-CCCccCCCC------CCCCEEEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCC--CcccceecccCC
Q 040119           61 -LGEG-AIPSGIGNL------CSLEELHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDGC  128 (366)
Q Consensus        61 -l~~~-~lP~~i~~L------~sL~~L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~c  128 (366)
                       ++ | .+|..++.+      ++|+.|+|++|+++.+|.  .++++++|+.|++++|++.+.+|.+  .+.|+.|+++++
T Consensus       285 ~l~-~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~L~~N  363 (636)
T 4eco_A          285 GIS-GEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLNLAYN  363 (636)
T ss_dssp             TSC-HHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEECCSS
T ss_pred             CCc-cccchHHHHhhhccccCCCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEECCCC
Confidence             87 7 799998887      999999999999999998  9999999999999999988788844  245666666543


Q ss_pred             ------------cC-ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          129 ------------VS-LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       129 ------------~s-L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                                  ++ |+.|+++     .+.+.  .+|.+|.... ..++..++++.|.+
T Consensus       364 ~l~~lp~~l~~l~~~L~~L~Ls-----~N~l~--~lp~~~~~~~-l~~L~~L~Ls~N~l  414 (636)
T 4eco_A          364 QITEIPANFCGFTEQVENLSFA-----HNKLK--YIPNIFDAKS-VSVMSAIDFSYNEI  414 (636)
T ss_dssp             EEEECCTTSEEECTTCCEEECC-----SSCCS--SCCSCCCTTC-SSCEEEEECCSSCT
T ss_pred             ccccccHhhhhhcccCcEEEcc-----CCcCc--ccchhhhhcc-cCccCEEECcCCcC
Confidence                        44 6666665     33333  5787776655 55678888887777

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.60  E-value=6.2e-15  Score=156.53  Aligned_cols=113  Identities=25%  Similarity=0.274  Sum_probs=76.5

Q ss_pred             CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++|+.|+|++|...... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+. +.+|..++.+++|+.|
T Consensus       417 l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~l~~l~~L~~L  495 (768)
T 3rgz_A          417 CSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLT-GEIPSGLSNCTNLNWI  495 (768)
T ss_dssp             CTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCC-SCCCGGGGGCTTCCEE
T ss_pred             CCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCccc-CcCCHHHhcCCCCCEE
Confidence            356666666666643222 22344556777777777777677777777777777777777776 6677777777777777


Q ss_pred             EccCCCCC-ccchhhhCCCCccEEEccCCcCccCCC
Q 040119           80 HLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        80 ~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      +|++|.++ .+|.+++.+++|+.|+|++|++.+.+|
T Consensus       496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p  531 (768)
T 3rgz_A          496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIP  531 (768)
T ss_dssp             ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECC
T ss_pred             EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCC
Confidence            77777776 667777777777777777777666555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.59  E-value=4.2e-14  Score=129.80  Aligned_cols=154  Identities=18%  Similarity=0.224  Sum_probs=100.7

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+
T Consensus        35 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  113 (251)
T 3m19_A           35 ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLY  113 (251)
T ss_dssp             TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCccc-ccChhHhcccCCCCEEE
Confidence            357777777777443332 3455667777777777777666666777777777777777776 44445667777777777


Q ss_pred             ccCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCc-ccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119           81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPA-SIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ  158 (366)
Q Consensus        81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~-~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~  158 (366)
                      |++|.|+.+|.. +..+++|+.|+|++|++.+    +|+ .+.     ++++|+.|+++     .+.+.+ ..|..|...
T Consensus       114 L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~----~~~~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l  178 (251)
T 3m19_A          114 LGGNQLKSLPSGVFDRLTKLKELRLNTNQLQS----IPAGAFD-----KLTNLQTLSLS-----TNQLQS-VPHGAFDRL  178 (251)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTTTT-----TCTTCCEEECC-----SSCCSC-CCTTTTTTC
T ss_pred             cCCCcCCCcChhHhccCCcccEEECcCCcCCc----cCHHHcC-----cCcCCCEEECC-----CCcCCc-cCHHHHhCC
Confidence            777777777654 5677777777777776442    222 232     56677777776     333432 123355554


Q ss_pred             CCCCceEEEECCCCCC
Q 040119          159 NNEGSSITISTPPKTY  174 (366)
Q Consensus       159 ~~~g~~~~l~L~~n~~  174 (366)
                      .   ++..++|..|.+
T Consensus       179 ~---~L~~L~l~~N~~  191 (251)
T 3m19_A          179 G---KLQTITLFGNQF  191 (251)
T ss_dssp             T---TCCEEECCSCCB
T ss_pred             C---CCCEEEeeCCce
Confidence            4   677888888877

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.59  E-value=3.6e-14  Score=131.92  Aligned_cols=154  Identities=17%  Similarity=0.160  Sum_probs=74.8

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|++|..... +....+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+|
T Consensus        63 ~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L  140 (272)
T 3rfs_A           63 PNVRYLALGGNKLHDI-SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNL  140 (272)
T ss_dssp             TTCCEEECTTSCCCCC-GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCEEEC
T ss_pred             CCCcEEECCCCCCCCc-hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCC-ccCHHHhccCCCCCEEEC
Confidence            4455555555543321 22333444555555555554333333445555555555555554 233333455555555555


Q ss_pred             cCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           82 SGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        82 s~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      ++|.++.+|.. +..+++|+.|++++|++.+    +|+..    +.++++|+.|+++     .+.+.+ ..|.+|.... 
T Consensus       141 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~----~~~~~----~~~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~-  205 (272)
T 3rfs_A          141 AHNQLQSLPKGVFDKLTNLTELDLSYNQLQS----LPEGV----FDKLTQLKDLRLY-----QNQLKS-VPDGVFDRLT-  205 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCCC----CCTTT----TTTCTTCCEEECC-----SSCCSC-CCTTTTTTCT-
T ss_pred             CCCccCccCHHHhccCccCCEEECCCCCcCc----cCHHH----hcCCccCCEEECC-----CCcCCc-cCHHHHhCCc-
Confidence            55555544432 3455555555555554332    11111    1245566666655     333332 2344565555 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..++|..|.+
T Consensus       206 --~L~~L~l~~N~~  217 (272)
T 3rfs_A          206 --SLQYIWLHDNPW  217 (272)
T ss_dssp             --TCCEEECCSSCB
T ss_pred             --CCCEEEccCCCc
Confidence              677888888876

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.57  E-value=2.6e-14  Score=127.24  Aligned_cols=109  Identities=17%  Similarity=0.170  Sum_probs=90.2

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+....+ .+..+.+|+.|++++|.+....+..+..+++|++|+|++|.+. +..+..++.+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  106 (208)
T 2o6s_A           28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELA  106 (208)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCC-ccCHhHhcCccCCCEEE
Confidence            579999999998554333 3456788999999999998554555789999999999999997 44445679999999999


Q ss_pred             ccCCCCCccchh-hhCCCCccEEEccCCcCcc
Q 040119           81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~  111 (366)
                      |++|.|+.+|.. +.++++|+.|++++|++.+
T Consensus       107 L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~  138 (208)
T 2o6s_A          107 LNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS  138 (208)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCSC
T ss_pred             cCCCcCcccCHhHhccCCcCCEEECCCCccce
Confidence            999999988764 7899999999999998664

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.57  E-value=6.8e-15  Score=158.19  Aligned_cols=164  Identities=16%  Similarity=0.147  Sum_probs=126.8

Q ss_pred             CCCccEEEeeCCCCCC-----------------CCCCcC---CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC
Q 040119            1 MKNLKELSFRGCKGSP-----------------SSASWF---LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD   60 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~-----------------~~~~~~---~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~   60 (366)
                      |++|+.|+|++|.+..                 +.|...   .+++|+.|++++|.+.+.+|..+.+|++|+.|+|++|+
T Consensus       447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~  526 (876)
T 4ecn_A          447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNR  526 (876)
T ss_dssp             CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCT
T ss_pred             CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCC
Confidence            5789999999999665                 133332   57889999999999999999999999999999999998


Q ss_pred             -CCCC-CCCccCCCCC-------CCCEEEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCC--CcccceecccC
Q 040119           61 -LGEG-AIPSGIGNLC-------SLEELHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDG  127 (366)
Q Consensus        61 -l~~~-~lP~~i~~L~-------sL~~L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~  127 (366)
                       ++ | .+|..++.++       +|+.|+|++|.++.+|.  .+.++++|+.|+|++|++. .+|.+  .+.|+.|++++
T Consensus       527 ~ls-g~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp~~~~L~~L~~L~Ls~  604 (876)
T 4ecn_A          527 GIS-AAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEAFGTNVKLTDLKLDY  604 (876)
T ss_dssp             TSC-HHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCC-BCCCCCTTSEESEEECCS
T ss_pred             Ccc-cccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcc-cchhhcCCCcceEEECcC
Confidence             76 7 7887666555       99999999999999998  8999999999999999976 67744  23566666544


Q ss_pred             C------------cC-ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          128 C------------VS-LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       128 c------------~s-L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +            ++ |+.|+++     .+.+.  .+|.+|.... ..++..++|+.|.+
T Consensus       605 N~l~~lp~~l~~l~~~L~~L~Ls-----~N~L~--~lp~~~~~~~-~~~L~~L~Ls~N~l  656 (876)
T 4ecn_A          605 NQIEEIPEDFCAFTDQVEGLGFS-----HNKLK--YIPNIFNAKS-VYVMGSVDFSYNKI  656 (876)
T ss_dssp             SCCSCCCTTSCEECTTCCEEECC-----SSCCC--SCCSCCCTTC-SSCEEEEECCSSCT
T ss_pred             CccccchHHHhhccccCCEEECc-----CCCCC--cCchhhhccc-cCCCCEEECcCCcC
Confidence            3            33 5555554     23333  5777776665 44577788877776

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.55  E-value=1.4e-13  Score=127.60  Aligned_cols=108  Identities=19%  Similarity=0.199  Sum_probs=80.6

Q ss_pred             CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|.+.... ..+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. +..+..+..+++|+.|+
T Consensus        37 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  115 (270)
T 2o6q_A           37 ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELR  115 (270)
T ss_dssp             TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCC-CCCTTTTTTCSSCCEEE
T ss_pred             CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCC-cCCHhHcccccCCCEEE
Confidence            36888899888854333 34566778888888888887333344577888888888888886 33345678888888888


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|.++.+|. .+..+++|+.|+|++|++.
T Consensus       116 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~  146 (270)
T 2o6q_A          116 LDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ  146 (270)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCccCeeCHHHhCcCcCCCEEECCCCcCC
Confidence            88888887764 5678888888888888754

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.55  E-value=7.5e-14  Score=131.42  Aligned_cols=105  Identities=21%  Similarity=0.194  Sum_probs=57.9

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+... ...+..++.|+.|++++|.+. .+|. ...+++|+.|+|++|.+..  +|..+..+++|+.|+
T Consensus        31 ~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~-~~~l~~L~~L~Ls~N~l~~--l~~~~~~l~~L~~L~  106 (290)
T 1p9a_G           31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (290)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC-cccC-CCCCCcCCEEECCCCcCCc--CchhhccCCCCCEEE
Confidence            3566666666664322 122344455666666666655 3333 2555666666666666632  555555666666666


Q ss_pred             ccCCCCCccc-hhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLP-ASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|.|+.+| ..+.++++|+.|+|++|++.
T Consensus       107 l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~  137 (290)
T 1p9a_G          107 VSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (290)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             CCCCcCcccCHHHHcCCCCCCEEECCCCCCC
Confidence            6666666554 34555666666666666533

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.55  E-value=3.9e-15  Score=141.48  Aligned_cols=163  Identities=18%  Similarity=0.252  Sum_probs=128.8

Q ss_pred             CCccEEEeeCCCCCC---CCCCcCCCCCccEEECcC-CCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCC
Q 040119            2 KNLKELSFRGCKGSP---SSASWFLPFPINLMRWSS-DPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLE   77 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~---~~~~~~~~~~L~~L~ls~-n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~   77 (366)
                      .+++.|+|++|....   ....+..++.|+.|++++ |.+.+.+|..+.++++|++|+|++|.+. +.+|..|+.+++|+
T Consensus        50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~-~~~p~~~~~l~~L~  128 (313)
T 1ogq_A           50 YRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLV  128 (313)
T ss_dssp             CCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCC
T ss_pred             ceEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeC-CcCCHHHhCCCCCC
Confidence            478999999999764   233455678899999995 9998899999999999999999999998 78999999999999


Q ss_pred             EEEccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCC----CCcccceecccCCc------------CccEeeCCCCC
Q 040119           78 ELHLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPR----LPASIHGIFLDGCV------------SLETLSDGYWR  140 (366)
Q Consensus        78 ~L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~----lp~~L~~L~~~~c~------------sL~~l~~~~f~  140 (366)
                      +|+|++|.++ .+|..+..+++|++|+|++|++.+.+|.    +++.|+.|+++++.            .|+.|+++   
T Consensus       129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~L~~L~Ls---  205 (313)
T 1ogq_A          129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLS---  205 (313)
T ss_dssp             EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECC---
T ss_pred             EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCcccEEECc---
Confidence            9999999999 8899999999999999999998866663    33466666665441            14444444   


Q ss_pred             CcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          141 DCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       141 ~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                        .+.+.+ .+|.+|....   ++..++|..|.+
T Consensus       206 --~N~l~~-~~~~~~~~l~---~L~~L~L~~N~l  233 (313)
T 1ogq_A          206 --RNMLEG-DASVLFGSDK---NTQKIHLAKNSL  233 (313)
T ss_dssp             --SSEEEE-CCGGGCCTTS---CCSEEECCSSEE
T ss_pred             --CCcccC-cCCHHHhcCC---CCCEEECCCCce
Confidence              233332 3667776655   677788887776

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.55  E-value=8e-14  Score=129.96  Aligned_cols=110  Identities=22%  Similarity=0.303  Sum_probs=87.6

Q ss_pred             CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCC-CCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDP-MALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +++|++|+|++|.+... ...+..+++|+.|++++|. +....|..+..+++|+.|+|++|.+. +..|..+..+++|++
T Consensus        55 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~  133 (285)
T 1ozn_A           55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY  133 (285)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCC-EECHhHhhCCcCCCE
Confidence            46889999999875443 3345566789999999997 66444777888999999999999987 556778888999999


Q ss_pred             EEccCCCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119           79 LHLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        79 L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |+|++|.++.+|. .+.++++|+.|+|++|++..
T Consensus       134 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  167 (285)
T 1ozn_A          134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS  167 (285)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred             EECCCCcccccCHhHhccCCCccEEECCCCcccc
Confidence            9999999987775 47888999999999987553

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.54  E-value=8.1e-14  Score=129.94  Aligned_cols=168  Identities=19%  Similarity=0.261  Sum_probs=119.7

Q ss_pred             CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|++|+|++|.+.... ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|. +. ...|..+..+++|++|
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~-~~~~~~~~~l~~L~~L  110 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLR-SVDPATFHGLGRLHTL  110 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCC-CCCTTTTTTCTTCCEE
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCcc-ccCHHHhcCCcCCCEE
Confidence            57999999999855433 345667889999999999987778889999999999999998 65 4447889999999999


Q ss_pred             EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCC-C--CcccceecccCCcCccEeeCCCCCCc----ccccCCC--
Q 040119           80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPR-L--PASIHGIFLDGCVSLETLSDGYWRDC----SIVVPGS--  149 (366)
Q Consensus        80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~-l--p~~L~~L~~~~c~sL~~l~~~~f~~~----~~~l~g~--  149 (366)
                      +|++|.++.+ |..+.++++|+.|++++|++.+..+. +  .++|+.|+++++ .++.+....|.++    .+.+.+.  
T Consensus       111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l  189 (285)
T 1ozn_A          111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-RISSVPERAFRGLHSLDRLLLHQNRV  189 (285)
T ss_dssp             ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSCC
T ss_pred             ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-cccccCHHHhcCccccCEEECCCCcc
Confidence            9999999977 56789999999999999996643322 1  235555555443 2222222112221    1112221  


Q ss_pred             --CCCcccccCCCCCceEEEECCCCCC
Q 040119          150 --EIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       150 --~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                        ..|.+|....   ++..++++.|.+
T Consensus       190 ~~~~~~~~~~l~---~L~~L~l~~n~l  213 (285)
T 1ozn_A          190 AHVHPHAFRDLG---RLMTLYLFANNL  213 (285)
T ss_dssp             CEECTTTTTTCT---TCCEEECCSSCC
T ss_pred             cccCHhHccCcc---cccEeeCCCCcC
Confidence              2366666555   677777777766

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.54  E-value=3.9e-14  Score=131.65  Aligned_cols=128  Identities=18%  Similarity=0.158  Sum_probs=102.1

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++|++|+|++|......+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|
T Consensus        84 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L  162 (272)
T 3rfs_A           84 LTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTEL  162 (272)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccC-ccCHHHhccCccCCEE
Confidence            5789999999998654333 3566788999999999999666666899999999999999997 5555667999999999


Q ss_pred             EccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|+++.+|. .+..+++|+.|++++|++.+..|..   +.     ++++|+.+++.
T Consensus       163 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~---~~-----~l~~L~~L~l~  213 (272)
T 3rfs_A          163 DLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV---FD-----RLTSLQYIWLH  213 (272)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT---TT-----TCTTCCEEECC
T ss_pred             ECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH---Hh-----CCcCCCEEEcc
Confidence            999999998875 4689999999999999976533321   22     45555555554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.52  E-value=5e-14  Score=139.45  Aligned_cols=112  Identities=22%  Similarity=0.301  Sum_probs=67.1

Q ss_pred             CCCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc--CCCCCCC
Q 040119            1 MKNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG--IGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~sL   76 (366)
                      |++|++|+|++|...  .+...+..+++|+.|++++|.+.+..|..+.++++|++|+|++|.+. +.+|..  ++.+++|
T Consensus        53 l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~~~l~~L  131 (455)
T 3v47_A           53 LQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD-GAVLSGNFFKPLTSL  131 (455)
T ss_dssp             CTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCB-THHHHSSTTTTCTTC
T ss_pred             CccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcccCCEEeCCCCCCC-ccccCcccccCcccC
Confidence            345666666666532  22233445556666666666666555666666666666666666665 434433  6666667


Q ss_pred             CEEEccCCCCCcc-chh-hhCCCCccEEEccCCcCccCC
Q 040119           77 EELHLSGNNFFTL-PAS-IYRLSKLSKIFLKDCKMLQNL  113 (366)
Q Consensus        77 ~~L~Ls~N~~~~l-P~~-i~~L~~L~~L~L~~n~~l~~l  113 (366)
                      ++|+|++|.++.+ |.. +.++++|+.|++++|++.+..
T Consensus       132 ~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~  170 (455)
T 3v47_A          132 EMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSIC  170 (455)
T ss_dssp             CEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCC
T ss_pred             CEEECCCCccCccCcccccCCCCcccEEeCCCCcccccC
Confidence            7777777766654 433 666677777777776655433

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.52  E-value=2e-13  Score=123.93  Aligned_cols=129  Identities=22%  Similarity=0.303  Sum_probs=77.6

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKI  102 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L  102 (366)
                      .+|+.|++++|.+.+..|..+..+++|+.|+|++|.+..  +| ..|..+++|+.|+|++|.|+.+|.. +..+++|+.|
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~--i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L  117 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA--LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKEL  117 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC--cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeE
Confidence            556777777777765556666667777777777777642  44 4456677777777777777766543 4666777777


Q ss_pred             EccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCC-cccccCCCCCceEEEECCCCCC
Q 040119          103 FLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIP-EWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       103 ~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP-~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +|++|++.    .+|..+.     ++++|+.|+++     .+.+.  .+| ..|....   ++..++|..|.+
T Consensus       118 ~Ls~N~l~----~lp~~~~-----~l~~L~~L~L~-----~N~l~--~~~~~~~~~l~---~L~~L~l~~N~~  171 (229)
T 3e6j_A          118 FMCCNKLT----ELPRGIE-----RLTHLTHLALD-----QNQLK--SIPHGAFDRLS---SLTHAYLFGNPW  171 (229)
T ss_dssp             ECCSSCCC----SCCTTGG-----GCTTCSEEECC-----SSCCC--CCCTTTTTTCT---TCCEEECTTSCB
T ss_pred             eccCCccc----ccCcccc-----cCCCCCEEECC-----CCcCC--ccCHHHHhCCC---CCCEEEeeCCCc
Confidence            77777633    3344443     55666666665     33333  233 3344444   566666666665

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.52  E-value=1.2e-13  Score=128.22  Aligned_cols=107  Identities=16%  Similarity=0.126  Sum_probs=61.8

Q ss_pred             CccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      +|++|+|++|......+ .+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. +..|..+..+++|+.|++
T Consensus        29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~l  107 (276)
T 2z62_A           29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA  107 (276)
T ss_dssp             TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEEC
T ss_pred             CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC-ccChhhhcCCccccEEEC
Confidence            46666666666432222 3444555666666666665444445666666666666666665 333455666666666666


Q ss_pred             cCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           82 SGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        82 s~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      ++|++..++. .+.++++|+.|++++|++.
T Consensus       108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  137 (276)
T 2z62_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQ  137 (276)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCccccCchhcccCCCCCEEECcCCccc
Confidence            6666665543 4556666666666666543

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.52  E-value=1.3e-13  Score=121.99  Aligned_cols=150  Identities=17%  Similarity=0.107  Sum_probs=118.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|+.|+|++|.+.. .+....+++|+.|++++|.+. .+ +.+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus        43 l~~L~~L~l~~n~i~~-l~~l~~l~~L~~L~l~~n~~~-~~-~~l~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~  118 (197)
T 4ezg_A           43 MNSLTYITLANINVTD-LTGIEYAHNIKDLTINNIHAT-NY-NPISGLSNLERLRIMGKDVT-SDKIPNLSGLTSLTLLD  118 (197)
T ss_dssp             HHTCCEEEEESSCCSC-CTTGGGCTTCSEEEEESCCCS-CC-GGGTTCTTCCEEEEECTTCB-GGGSCCCTTCTTCCEEE
T ss_pred             cCCccEEeccCCCccC-hHHHhcCCCCCEEEccCCCCC-cc-hhhhcCCCCCEEEeECCccC-cccChhhcCCCCCCEEE
Confidence            3589999999998663 235666788999999999775 44 46999999999999999998 66799999999999999


Q ss_pred             ccCCCCCc-cchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119           81 LSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN  159 (366)
Q Consensus        81 Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~  159 (366)
                      |++|.++. .|..+..+++|+.|++++|+..+.+|    .+.     ++++|+.|+++     .+.+.+  +| .+....
T Consensus       119 Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~----~l~-----~l~~L~~L~l~-----~n~i~~--~~-~l~~l~  181 (197)
T 4ezg_A          119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIM----PLK-----TLPELKSLNIQ-----FDGVHD--YR-GIEDFP  181 (197)
T ss_dssp             CCSSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG----GGG-----GCSSCCEEECT-----TBCCCC--CT-TGGGCS
T ss_pred             ecCCccCcHhHHHHhhCCCCCEEEccCCCCccccH----hhc-----CCCCCCEEECC-----CCCCcC--hH-HhccCC
Confidence            99999994 78889999999999999998555443    233     78889999887     333432  44 455444


Q ss_pred             CCCceEEEECCCCCC
Q 040119          160 NEGSSITISTPPKTY  174 (366)
Q Consensus       160 ~~g~~~~l~L~~n~~  174 (366)
                         ++..+++..|.+
T Consensus       182 ---~L~~L~l~~N~i  193 (197)
T 4ezg_A          182 ---KLNQLYAFSQTI  193 (197)
T ss_dssp             ---SCCEEEECBC--
T ss_pred             ---CCCEEEeeCccc
Confidence               788888888876

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.51  E-value=4.9e-14  Score=133.61  Aligned_cols=108  Identities=18%  Similarity=0.169  Sum_probs=83.8

Q ss_pred             CCCccEEEeeCCCCCCCCCCc---CCCCCccEEECcCCCCCCCCCccCCCC-----CCCcEEEeecCCCCCCCCCccCCC
Q 040119            1 MKNLKELSFRGCKGSPSSASW---FLPFPINLMRWSSDPMALSLPSSLSGL-----CSLTKLDISYCDLGEGAIPSGIGN   72 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~---~~~~~L~~L~ls~n~l~~~lP~sl~~L-----~~L~~L~Ls~n~l~~~~lP~~i~~   72 (366)
                      +++|++|+|++|......+..   ..+++|+.|++++|.+.+. |..+..+     ++|++|+|++|.+. +..|..|+.
T Consensus        94 l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~-~~~~~~~~~  171 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSL-NFSCEQVRV  171 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCC-CCCTTTCCC
T ss_pred             cCCccEEEccCCcccchhHHHHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCc-cchHHHhcc
Confidence            468899999999865433332   5567799999999998855 7777766     88999999999987 555688888


Q ss_pred             CCCCCEEEccCCCCCc---cchhh--hCCCCccEEEccCCcCc
Q 040119           73 LCSLEELHLSGNNFFT---LPASI--YRLSKLSKIFLKDCKML  110 (366)
Q Consensus        73 L~sL~~L~Ls~N~~~~---lP~~i--~~L~~L~~L~L~~n~~l  110 (366)
                      +++|+.|+|++|.+..   +|..+  ..+++|+.|+|++|++.
T Consensus       172 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~  214 (312)
T 1wwl_A          172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME  214 (312)
T ss_dssp             CSSCCEEECCSCTTCHHHHHHHHSCTTSCTTCCEEECTTSCCC
T ss_pred             CCCCCEEECCCCCcCcchHHHHHHHhccCCCCCEEECCCCcCc
Confidence            9999999999988763   35555  78888888888888854

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.50  E-value=3.1e-13  Score=124.01  Aligned_cols=128  Identities=18%  Similarity=0.153  Sum_probs=104.9

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++|++|+|++|.+....+ .+..+++|+.|++++|.+....|..+..+++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus        58 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  136 (251)
T 3m19_A           58 LTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLKEL  136 (251)
T ss_dssp             CTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccCCEEECCCCcCCccCHhHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCC-CcChhHhccCCcccEE
Confidence            5789999999999655433 3566788999999999999666677899999999999999997 4444557999999999


Q ss_pred             EccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|+|+.+|. .+..+++|+.|+|++|++.+..+   ..+.     ++++|+.+++.
T Consensus       137 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~l~  187 (251)
T 3m19_A          137 RLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPH---GAFD-----RLGKLQTITLF  187 (251)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTT-----TCTTCCEEECC
T ss_pred             ECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCH---HHHh-----CCCCCCEEEee
Confidence            999999998886 68999999999999999653222   1333     67788888877

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.50  E-value=8.9e-14  Score=130.85  Aligned_cols=107  Identities=24%  Similarity=0.264  Sum_probs=48.1

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|........+..+++|+.|++++|.+....+ ..+..+++|+.|+|++|.+. +..|..+..+++|+.|+
T Consensus        78 ~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  156 (306)
T 2z66_A           78 TSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR-VAFNGIFNGLSSLEVLK  156 (306)
T ss_dssp             SCCCEEECCSCSEEEEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCE-ECSTTTTTTCTTCCEEE
T ss_pred             cccCEEECCCCccccChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCC-ccchhhcccCcCCCEEE
Confidence            45555555555432211122333445555555554442211 23444445555555555444 33444444444455555


Q ss_pred             ccCCCCCc--cchhhhCCCCccEEEccCCcC
Q 040119           81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      |++|.+..  +|..+..+++|+.|++++|++
T Consensus       157 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l  187 (306)
T 2z66_A          157 MAGNSFQENFLPDIFTELRNLTFLDLSQCQL  187 (306)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred             CCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence            55444442  344444444455555544443

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.50  E-value=1.1e-13  Score=131.16  Aligned_cols=154  Identities=13%  Similarity=0.026  Sum_probs=113.1

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCC-----CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCC--CCccC--C
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLP-----FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGA--IPSGI--G   71 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~-----~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~--lP~~i--~   71 (366)
                      +++|++|+|++|.+.........+     ++|+.|++++|.+.+..|..+..+++|+.|+|++|++. +.  +|..+  +
T Consensus       120 l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~  198 (312)
T 1wwl_A          120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL-GERGLISALCPL  198 (312)
T ss_dssp             SCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTC-HHHHHHHHSCTT
T ss_pred             CCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcC-cchHHHHHHHhc
Confidence            578999999999966542222222     78999999999999777789999999999999999986 54  34455  8


Q ss_pred             CCCCCCEEEccCCCCCccc---h-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccC
Q 040119           72 NLCSLEELHLSGNNFFTLP---A-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVP  147 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~~lP---~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~  147 (366)
                      .+++|++|+|++|.|+.+|   . .+.++++|+.|+|++|++.+..|.  ..+.     .+++|+.|+++     .+.+.
T Consensus       199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~--~~~~-----~l~~L~~L~Ls-----~N~l~  266 (312)
T 1wwl_A          199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA--PSCD-----WPSQLNSLNLS-----FTGLK  266 (312)
T ss_dssp             SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCC--SCCC-----CCTTCCEEECT-----TSCCS
T ss_pred             cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccch--hhhh-----hcCCCCEEECC-----CCccC
Confidence            9999999999999999554   3 346889999999999997764421  1111     34566666665     33333


Q ss_pred             CCCCCcccccCCCCCceEEEECCCCCC
Q 040119          148 GSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       148 g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                        .||.++.  .   ++..++|+.|.+
T Consensus       267 --~ip~~~~--~---~L~~L~Ls~N~l  286 (312)
T 1wwl_A          267 --QVPKGLP--A---KLSVLDLSYNRL  286 (312)
T ss_dssp             --SCCSSCC--S---EEEEEECCSSCC
T ss_pred             --hhhhhcc--C---CceEEECCCCCC
Confidence              4666654  3   566777777766

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.49  E-value=9.4e-13  Score=122.06  Aligned_cols=105  Identities=19%  Similarity=0.232  Sum_probs=76.1

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L~L   81 (366)
                      +++.++++++..... +. .....++.|++++|.+....+..+.++++|+.|+|++|.+..  +|. .|..+++|++|+|
T Consensus        17 ~~~~l~~~~~~l~~i-p~-~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--i~~~~~~~l~~L~~L~l   92 (270)
T 2o6q_A           17 NKNSVDCSSKKLTAI-PS-NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--LPAGIFKELKNLETLWV   92 (270)
T ss_dssp             TTTEEECTTSCCSSC-CS-CCCTTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC--CCTTTTSSCTTCCEEEC
T ss_pred             CCCEEEccCCCCCcc-CC-CCCCCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe--eChhhhcCCCCCCEEEC
Confidence            466788887774432 21 122568888888888875445578888888888888888863  554 4577888888888


Q ss_pred             cCCCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119           82 SGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        82 s~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~  111 (366)
                      ++|.++.+|. .+..+++|+.|+|++|++.+
T Consensus        93 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  123 (270)
T 2o6q_A           93 TDNKLQALPIGVFDQLVNLAELRLDRNQLKS  123 (270)
T ss_dssp             CSSCCCCCCTTTTTTCSSCCEEECCSSCCCC
T ss_pred             CCCcCCcCCHhHcccccCCCEEECCCCccCe
Confidence            8888887764 45778888888888888554

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.49  E-value=2.5e-13  Score=135.20  Aligned_cols=112  Identities=18%  Similarity=0.220  Sum_probs=85.5

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+... ...+..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.+. +..+..|..+++|++|+
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  153 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLT-VIPSGAFEYLSKLRELW  153 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCS-BCCTTTSSSCTTCCEEE
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCC-ccChhhhcccCCCCEEE
Confidence            4688889988885433 344566778888999988888767778888888999999988886 33345588888888888


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      |++|.|+.+|. .+.++++|+.|++++|+.++.+|
T Consensus       154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  188 (452)
T 3zyi_A          154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYIS  188 (452)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccC
Confidence            88888887764 67777788888887766665554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.49  E-value=2.7e-13  Score=139.81  Aligned_cols=109  Identities=17%  Similarity=0.248  Sum_probs=84.6

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~   78 (366)
                      |++|+.|+|++|.+....+ .+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+..  +|.. |+.+++|++
T Consensus        74 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~  151 (597)
T 3oja_B           74 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTT  151 (597)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred             CCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCCC--CCHHHhccCCCCCE
Confidence            4678888888888554333 55667778888888888886666677888888888888888863  5554 588888888


Q ss_pred             EEccCCCCCccc-hhhhCCCCccEEEccCCcCcc
Q 040119           79 LHLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        79 L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |+|++|.++.+| ..+.++++|+.|+|++|.+.+
T Consensus       152 L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~  185 (597)
T 3oja_B          152 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  185 (597)
T ss_dssp             EECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB
T ss_pred             EEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC
Confidence            888888888664 468888888888888887654

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.49  E-value=7.9e-14  Score=119.92  Aligned_cols=127  Identities=20%  Similarity=0.240  Sum_probs=89.0

Q ss_pred             CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|+.|+|++|...  ........+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+. +.+|..+..+++|+.|
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  100 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-V-SNLPKLPKLKKLELSENRIF-GGLDMLAEKLPNLTHL  100 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCC-C-SSCCCCSSCCEEEEESCCCC-SCCCHHHHHCTTCCEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCC-h-hhhccCCCCCEEECcCCcCc-hHHHHHHhhCCCCCEE
Confidence            56888888888755  222223455678888888888874 3 56788888888888888887 5577777778888888


Q ss_pred             EccCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCC-cccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLP-ASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp-~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|.++.+|  ..+..+++|+.|++++|++.+ +|... ..+     ..+++|+.+++.
T Consensus       101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~-~~~~~~~~~-----~~l~~L~~L~l~  155 (168)
T 2ell_A          101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTN-LNDYRESVF-----KLLPQLTYLDGY  155 (168)
T ss_dssp             ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGT-STTHHHHHH-----TTCSSCCEETTE
T ss_pred             eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcc-hHHHHHHHH-----HhCccCcEecCC
Confidence            88888888776  678888888888888887543 22200 022     256666666654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.47  E-value=6.2e-13  Score=126.50  Aligned_cols=103  Identities=16%  Similarity=0.181  Sum_probs=66.3

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+  +|..+.  ++|+.|+
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--l~~~~~--~~L~~L~  127 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMP--KTLQELR  127 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCc--cChhhc--ccccEEE
Confidence            467888888887544333 45566778888888888876667788888888888888888753  665543  4555555


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~  108 (366)
                      +++|.++.+|. .+.++++|+.|++++|+
T Consensus       128 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  156 (330)
T 1xku_A          128 VHENEITKVRKSVFNGLNQMIVVELGTNP  156 (330)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred             CCCCcccccCHhHhcCCccccEEECCCCc
Confidence            55555554432 34444444444444443

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.47  E-value=1.6e-13  Score=121.39  Aligned_cols=124  Identities=21%  Similarity=0.192  Sum_probs=105.3

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|++|+|++|..... +....+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus        65 l~~L~~L~l~~n~~~~~-~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls~n~i~-~~~~~~l~~l~~L~~L~  142 (197)
T 4ezg_A           65 AHNIKDLTINNIHATNY-NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHD-DSILTKINTLPKVNSID  142 (197)
T ss_dssp             CTTCSEEEEESCCCSCC-GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECCSSBCB-GGGHHHHTTCSSCCEEE
T ss_pred             CCCCCEEEccCCCCCcc-hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEecCCccC-cHhHHHHhhCCCCCEEE
Confidence            57899999999964433 35566788999999999998778888999999999999999998 66789999999999999


Q ss_pred             ccCCC-CCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           81 LSGNN-FFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~-~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|. ++.+| .+..+++|+.|++++|++.. ++    .+.     ++++|+.|++.
T Consensus       143 L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~----~l~-----~l~~L~~L~l~  189 (197)
T 4ezg_A          143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR----GIE-----DFPKLNQLYAF  189 (197)
T ss_dssp             CCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT----TGG-----GCSSCCEEEEC
T ss_pred             ccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH----Hhc-----cCCCCCEEEee
Confidence            99998 88888 79999999999999998543 22    233     67788888765

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.47  E-value=6.8e-13  Score=129.15  Aligned_cols=109  Identities=17%  Similarity=0.242  Sum_probs=81.3

Q ss_pred             CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~   78 (366)
                      +++|++|+|++|..... ...+..+.+|+.|++++|.+.+..|..+.++++|+.|+|++|.+..  +|.. ++.+++|++
T Consensus        68 l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~  145 (390)
T 3o6n_A           68 FRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS--LPRGIFHNTPKLTT  145 (390)
T ss_dssp             CCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCE
T ss_pred             cccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccCc--CCHHHhcCCCCCcE
Confidence            46788888888874433 2345566778888888888876666667888888888888888863  6655 578888888


Q ss_pred             EEccCCCCCccc-hhhhCCCCccEEEccCCcCcc
Q 040119           79 LHLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        79 L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |+|++|.++.++ ..+.++++|+.|++++|++..
T Consensus       146 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  179 (390)
T 3o6n_A          146 LSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH  179 (390)
T ss_dssp             EECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB
T ss_pred             EECCCCccCccChhhccCCCCCCEEECCCCcCCc
Confidence            888888888664 457888888888888887553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.47  E-value=5.4e-13  Score=132.26  Aligned_cols=112  Identities=19%  Similarity=0.232  Sum_probs=82.0

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+.. +...+..+.+|+.|++++|.+....|..|.++++|+.|+|++|++. +..+..|..+++|+.|+
T Consensus        64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  142 (440)
T 3zyj_A           64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLT-TIPNGAFVYLSKLKELW  142 (440)
T ss_dssp             TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCS-SCCTTTSCSCSSCCEEE
T ss_pred             CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCC-eeCHhHhhccccCceee
Confidence            467888888887443 3344566677888888888887666677888888888888888886 33334688888888888


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCccCCC
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      |++|.|+.+|. .+.++++|+.|+|++|+.++.++
T Consensus       143 L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~  177 (440)
T 3zyj_A          143 LRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYIS  177 (440)
T ss_dssp             CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEEC
T ss_pred             CCCCcccccCHHHhhhCcccCEeCCCCCCCcceeC
Confidence            88888887764 56777777777777766555544

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.46  E-value=4.2e-14  Score=119.24  Aligned_cols=126  Identities=19%  Similarity=0.219  Sum_probs=94.0

Q ss_pred             CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|+.|++++|...  ........+++|+.|++++|.+.. + ..+..+++|+.|+|++|.+. +.+|..++.+++|+.|
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~-~-~~~~~l~~L~~L~Ls~n~i~-~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-I-ANLPKLNKLKKLELSDNRVS-GGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCC-C-TTCCCCTTCCEEECCSSCCC-SCTHHHHHHCTTCCEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCC-c-hhhhcCCCCCEEECCCCccc-chHHHHhhhCCCCCEE
Confidence            56889999998865  222334566789999999998874 4 56888999999999999997 6678777788899999


Q ss_pred             EccCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCC-cccceecccCCcCccEeeC
Q 040119           80 HLSGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLP-ASIHGIFLDGCVSLETLSD  136 (366)
Q Consensus        80 ~Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp-~~L~~L~~~~c~sL~~l~~  136 (366)
                      +|++|.++.+|  ..+..+++|+.|++++|++.+ +|..+ ..+.     .+++|+.+++
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~~~~~-----~l~~L~~L~l  147 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTN-LNDYRENVFK-----LLPQLTYLDG  147 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGG-STTHHHHHHH-----HCTTCCEETT
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccc-hHHHHHHHHH-----HCCCcccccC
Confidence            99999998765  788889999999999998553 33211 1222     5666666654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.46  E-value=3.6e-13  Score=121.58  Aligned_cols=150  Identities=15%  Similarity=0.145  Sum_probs=111.5

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      +.|++++|..... |. .....++.|++++|.+.+..| ..+..+++|+.|+|++|.+. +..|..|..+++|+.|+|++
T Consensus        14 ~~l~~s~n~l~~i-P~-~~~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~-~i~~~~~~~l~~L~~L~Ls~   90 (220)
T 2v70_A           14 TTVDCSNQKLNKI-PE-HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTS   90 (220)
T ss_dssp             TEEECCSSCCSSC-CS-CCCTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEECCS
T ss_pred             CEeEeCCCCcccC-cc-CCCCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCC-EECHHHhCCCCCCCEEECCC
Confidence            5788888874432 21 223457899999999985544 34788999999999999997 45556899999999999999


Q ss_pred             CCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCC
Q 040119           84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEG  162 (366)
Q Consensus        84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g  162 (366)
                      |.|+.+|. .+.++++|+.|+|++|++.+..|   ..+.     ++++|+.|+++     .+.+.+ -.|..|....   
T Consensus        91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~---~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~---  153 (220)
T 2v70_A           91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGN---DSFI-----GLSSVRLLSLY-----DNQITT-VAPGAFDTLH---  153 (220)
T ss_dssp             SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCT---TSST-----TCTTCSEEECT-----TSCCCC-BCTTTTTTCT---
T ss_pred             CccCccCHhHhcCCcCCCEEECCCCcCCeECH---hHcC-----CCccCCEEECC-----CCcCCE-ECHHHhcCCC---
Confidence            99997765 58889999999999998664322   2333     67788888887     445543 2477777666   


Q ss_pred             ceEEEECCCCCC
Q 040119          163 SSITISTPPKTY  174 (366)
Q Consensus       163 ~~~~l~L~~n~~  174 (366)
                      ++..++|..|.+
T Consensus       154 ~L~~L~L~~N~l  165 (220)
T 2v70_A          154 SLSTLNLLANPF  165 (220)
T ss_dssp             TCCEEECCSCCE
T ss_pred             CCCEEEecCcCC
Confidence            788899988877

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.46  E-value=1.7e-12  Score=117.83  Aligned_cols=127  Identities=19%  Similarity=0.195  Sum_probs=104.1

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+... ...+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.++ +..+..|..+++|+.|+
T Consensus        40 ~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~~l~~L~~L~  118 (229)
T 3e6j_A           40 TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLT-VLPSAVFDRLVHLKELF  118 (229)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCC-ccChhHhCcchhhCeEe
Confidence            5799999999996654 334566788999999999997444455789999999999999997 44455679999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|.|+.+|..+..+++|+.|+|++|++.. +|.  ..+.     ++++|+.+++.
T Consensus       119 Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~-~~~--~~~~-----~l~~L~~L~l~  167 (229)
T 3e6j_A          119 MCCNKLTELPRGIERLTHLTHLALDQNQLKS-IPH--GAFD-----RLSSLTHAYLF  167 (229)
T ss_dssp             CCSSCCCSCCTTGGGCTTCSEEECCSSCCCC-CCT--TTTT-----TCTTCCEEECT
T ss_pred             ccCCcccccCcccccCCCCCEEECCCCcCCc-cCH--HHHh-----CCCCCCEEEee
Confidence            9999999999999999999999999998553 321  2233     67888888877

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=99.46  E-value=8.4e-14  Score=144.89  Aligned_cols=142  Identities=15%  Similarity=0.144  Sum_probs=112.9

Q ss_pred             cCCCCCccEEECcCCCCCCC-----------------CCccCC--CCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119           21 WFLPFPINLMRWSSDPMALS-----------------LPSSLS--GLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus        21 ~~~~~~L~~L~ls~n~l~~~-----------------lP~sl~--~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ...+++|+.|++++|.+.+.                 +|..++  ++++|++|+|++|++. +.+|..|+.+++|+.|+|
T Consensus       202 l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L  280 (636)
T 4eco_A          202 VMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNL-TKLPTFLKALPEMQLINV  280 (636)
T ss_dssp             GGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTC-SSCCTTTTTCSSCCEEEC
T ss_pred             HhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCC-ccChHHHhcCCCCCEEEC
Confidence            33467799999999999975                 999999  9999999999999998 899999999999999999


Q ss_pred             cCCC-CC--ccchhhhCC------CCccEEEccCCcCccCCCC---C--CcccceecccCCc------------CccEee
Q 040119           82 SGNN-FF--TLPASIYRL------SKLSKIFLKDCKMLQNLPR---L--PASIHGIFLDGCV------------SLETLS  135 (366)
Q Consensus        82 s~N~-~~--~lP~~i~~L------~~L~~L~L~~n~~l~~lp~---l--p~~L~~L~~~~c~------------sL~~l~  135 (366)
                      ++|+ ++  .+|..++++      ++|+.|++++|++. .+|.   +  .+.|+.|+++++.            +|+.|+
T Consensus       281 s~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N~l~g~ip~~~~l~~L~~L~  359 (636)
T 4eco_A          281 ACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYNQLEGKLPAFGSEIKLASLN  359 (636)
T ss_dssp             TTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSCCCEEECCCCEEEEEESEEE
T ss_pred             cCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCCcCccchhhhCCCCCCCEEE
Confidence            9998 88  599999887      99999999999976 6665   1  2356666665442            233333


Q ss_pred             CCCCCCcccccCCCCCCcccccCCCCCc-eEEEECCCCCC
Q 040119          136 DGYWRDCSIVVPGSEIPEWFEYQNNEGS-SITISTPPKTY  174 (366)
Q Consensus       136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~-~~~l~L~~n~~  174 (366)
                      ++     .+.+.  .+|.+|....   + +..++++.|.+
T Consensus       360 L~-----~N~l~--~lp~~l~~l~---~~L~~L~Ls~N~l  389 (636)
T 4eco_A          360 LA-----YNQIT--EIPANFCGFT---EQVENLSFAHNKL  389 (636)
T ss_dssp             CC-----SSEEE--ECCTTSEEEC---TTCCEEECCSSCC
T ss_pred             CC-----CCccc--cccHhhhhhc---ccCcEEEccCCcC
Confidence            32     22222  5888887766   6 88889998887

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=5.7e-13  Score=120.28  Aligned_cols=126  Identities=18%  Similarity=0.195  Sum_probs=95.6

Q ss_pred             CCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L   79 (366)
                      ++|+.|+|++|.+.... ..+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+..  +|. .|..+++|+.|
T Consensus        32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~--l~~~~f~~l~~L~~L  109 (220)
T 2v9t_B           32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITE--LPKSLFEGLFSLQLL  109 (220)
T ss_dssp             TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCC--CCTTTTTTCTTCCEE
T ss_pred             cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCc--cCHhHccCCCCCCEE
Confidence            46888999988855433 355667789999999999887778888889999999999999863  554 46888999999


Q ss_pred             EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|.|+.+ |..+..+++|+.|+|++|++.+..+   ..+.     .+++|+.+++.
T Consensus       110 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~  160 (220)
T 2v9t_B          110 LLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAK---GTFS-----PLRAIQTMHLA  160 (220)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCT---TTTT-----TCTTCCEEECC
T ss_pred             ECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECH---HHHh-----CCCCCCEEEeC
Confidence            9999999876 4678888999999999988554222   1232     56677777776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.46  E-value=8.4e-13  Score=130.87  Aligned_cols=125  Identities=15%  Similarity=0.181  Sum_probs=81.0

Q ss_pred             CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |++|+.|+|++|.+... ...+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. ...+..|..+++|+.|
T Consensus        87 l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L  165 (440)
T 3zyj_A           87 LRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIE-SIPSYAFNRIPSLRRL  165 (440)
T ss_dssp             CSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCccc-ccCHHHhhhCcccCEe
Confidence            46788888888874432 234556677888888888887444446778888888888888876 3334467777777777


Q ss_pred             EccC-CCCCccch-hhhCCCCccEEEccCCcCccCCCCC--CcccceecccC
Q 040119           80 HLSG-NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLDG  127 (366)
Q Consensus        80 ~Ls~-N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~~  127 (366)
                      +|++ |.+..+|. .+.++++|+.|+|++|++. .+|.+  ..+|+.|++++
T Consensus       166 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls~  216 (440)
T 3zyj_A          166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTPLIKLDELDLSG  216 (440)
T ss_dssp             ECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCCCCTTCSSCCEEECTT
T ss_pred             CCCCCCCcceeCcchhhcccccCeecCCCCcCc-cccccCCCcccCEEECCC
Confidence            7776 34555554 5667777777777777643 34543  22444444433

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.46  E-value=1.7e-13  Score=131.76  Aligned_cols=154  Identities=22%  Similarity=0.215  Sum_probs=78.2

Q ss_pred             CccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCEEE
Q 040119            3 NLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELH   80 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~L~   80 (366)
                      +|++|+|++|...... ..+..+++|+.|++++|.+.+..|..+.++++|+.|+|++|.+..  +|.. ++.+++|++|+
T Consensus        53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~  130 (353)
T 2z80_A           53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSN--LSSSWFKPLSSLTFLN  130 (353)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSS--CCHHHHTTCTTCSEEE
T ss_pred             cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCc--CCHhHhCCCccCCEEE
Confidence            4556666666533222 233444556666666666654444555566666666666666642  4433 55566666666


Q ss_pred             ccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119           81 LSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ  158 (366)
Q Consensus        81 Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~  158 (366)
                      |++|.++.+|.  .+.++++|+.|++++|..++.++.  ..+.     ++++|+.++++     .+.+.+ ..|.+|...
T Consensus       131 L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~--~~~~-----~l~~L~~L~l~-----~n~l~~-~~~~~l~~l  197 (353)
T 2z80_A          131 LLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQR--KDFA-----GLTFLEELEID-----ASDLQS-YEPKSLKSI  197 (353)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECT--TTTT-----TCCEEEEEEEE-----ETTCCE-ECTTTTTTC
T ss_pred             CCCCCCcccCchhhhccCCCCcEEECCCCccccccCH--HHcc-----CCCCCCEEECC-----CCCcCc-cCHHHHhcc
Confidence            66666665554  455566666666666543322211  1111     33444444433     222221 235555554


Q ss_pred             CCCCceEEEECCCCCC
Q 040119          159 NNEGSSITISTPPKTY  174 (366)
Q Consensus       159 ~~~g~~~~l~L~~n~~  174 (366)
                      .   ++..+++..|.+
T Consensus       198 ~---~L~~L~l~~n~l  210 (353)
T 2z80_A          198 Q---NVSHLILHMKQH  210 (353)
T ss_dssp             S---EEEEEEEECSCS
T ss_pred             c---cCCeecCCCCcc
Confidence            4   566666666655

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.46  E-value=1.1e-12  Score=118.29  Aligned_cols=150  Identities=21%  Similarity=0.205  Sum_probs=115.9

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN   84 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N   84 (366)
                      +.++++++.......  .....|+.|++++|.+....|..+..+++|+.|+|++|.+. +..|..|..+++|++|+|++|
T Consensus        14 ~~v~c~~~~l~~iP~--~l~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N   90 (220)
T 2v9t_B           14 NIVDCRGKGLTEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN   90 (220)
T ss_dssp             TEEECTTSCCSSCCS--SCCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCC-EECTTTTTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCcCcCCC--ccCcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCC-CcCHHHhhCCcCCCEEECCCC
Confidence            467777776433221  12367999999999998666668999999999999999998 666899999999999999999


Q ss_pred             CCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCc
Q 040119           85 NFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGS  163 (366)
Q Consensus        85 ~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~  163 (366)
                      .|+.+|.. +.++++|+.|+|++|++.+..|   ..+.     ++++|+.|+++     .+.+.+ -.|..|....   +
T Consensus        91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~-----~N~l~~-~~~~~~~~l~---~  153 (220)
T 2v9t_B           91 KITELPKSLFEGLFSLQLLLLNANKINCLRV---DAFQ-----DLHNLNLLSLY-----DNKLQT-IAKGTFSPLR---A  153 (220)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCCCCCT---TTTT-----TCTTCCEEECC-----SSCCSC-CCTTTTTTCT---T
T ss_pred             cCCccCHhHccCCCCCCEEECCCCCCCEeCH---HHcC-----CCCCCCEEECC-----CCcCCE-ECHHHHhCCC---C
Confidence            99999875 6889999999999999664322   2333     77888888887     444433 1334566555   7


Q ss_pred             eEEEECCCCCC
Q 040119          164 SITISTPPKTY  174 (366)
Q Consensus       164 ~~~l~L~~n~~  174 (366)
                      +..++|..|.+
T Consensus       154 L~~L~L~~N~~  164 (220)
T 2v9t_B          154 IQTMHLAQNPF  164 (220)
T ss_dssp             CCEEECCSSCE
T ss_pred             CCEEEeCCCCc
Confidence            88899999876

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.46  E-value=9.8e-13  Score=123.73  Aligned_cols=153  Identities=24%  Similarity=0.233  Sum_probs=123.7

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|.+..... ...+++|+.|++++|.+. .+|..+..+++|+.|+|++|+++ +..|..|..+++|+.|+
T Consensus        54 l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~l~~L~~L~  130 (290)
T 1p9a_G           54 YTRLTQLNLDRAELTKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY  130 (290)
T ss_dssp             CTTCCEEECTTSCCCEEEC-CSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCcccC-CCCCCcCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCc-ccCHHHHcCCCCCCEEE
Confidence            5789999999998554333 256788999999999998 89999999999999999999997 44457799999999999


Q ss_pred             ccCCCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119           81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN  159 (366)
Q Consensus        81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~  159 (366)
                      |++|.++.+|.. +..+++|+.|+|++|++.    .+|....    .++++|+.|+++     .+.+.  .||.++....
T Consensus       131 L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~----~l~~~~~----~~l~~L~~L~L~-----~N~l~--~ip~~~~~~~  195 (290)
T 1p9a_G          131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLT----ELPAGLL----NGLENLDTLLLQ-----ENSLY--TIPKGFFGSH  195 (290)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCS----CCCTTTT----TTCTTCCEEECC-----SSCCC--CCCTTTTTTC
T ss_pred             CCCCCCCccChhhcccccCCCEEECCCCcCC----ccCHHHh----cCcCCCCEEECC-----CCcCC--ccChhhcccc
Confidence            999999988764 678999999999999854    3333321    267788888887     44443  5888877655


Q ss_pred             CCCceEEEECCCCCC
Q 040119          160 NEGSSITISTPPKTY  174 (366)
Q Consensus       160 ~~g~~~~l~L~~n~~  174 (366)
                         .+..++|..|.+
T Consensus       196 ---~L~~l~L~~Np~  207 (290)
T 1p9a_G          196 ---LLPFAFLHGNPW  207 (290)
T ss_dssp             ---CCSEEECCSCCB
T ss_pred             ---cCCeEEeCCCCc
Confidence               677889998877

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.46  E-value=7.4e-13  Score=132.19  Aligned_cols=108  Identities=20%  Similarity=0.228  Sum_probs=55.7

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|.... +...+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+
T Consensus        80 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           80 FNLRTLGLRSNRLKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             TTCCEEECCSSCCCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-EECTTSSTTCTTCCEEE
T ss_pred             ccCCEEECCCCcCCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-eeChhhccCCCCCCEEE
Confidence            344555555444222 1112333444555555555555444445555555555555555554 33445555556666666


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|.++.+|. .+.++++|+.|+|++|.+.
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~  189 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNIN  189 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCC
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCc
Confidence            66666655543 3555666666666665543

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.45  E-value=8.9e-13  Score=131.15  Aligned_cols=124  Identities=13%  Similarity=0.145  Sum_probs=87.5

Q ss_pred             CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |++|+.|+|++|.+... ...+..+++|+.|++++|.+....+..+..+++|+.|+|++|.+. ...+..|..+++|+.|
T Consensus        98 l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  176 (452)
T 3zyi_A           98 LHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRL  176 (452)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCC-EECTTTTTTCTTCCEE
T ss_pred             CCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcc-eeCHhHHhcCCcccEE
Confidence            57899999999985433 344566788999999999988555556888999999999999886 3334467788888888


Q ss_pred             EccC-CCCCccch-hhhCCCCccEEEccCCcCccCCCCC--Ccccceeccc
Q 040119           80 HLSG-NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLD  126 (366)
Q Consensus        80 ~Ls~-N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~  126 (366)
                      +|++ |.+..+|. .+.++++|+.|+|++|++. .+|.+  .++|+.|+++
T Consensus       177 ~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~l~~L~~L~Ls  226 (452)
T 3zyi_A          177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPNLTPLVGLEELEMS  226 (452)
T ss_dssp             ECCCCTTCCEECTTTTTTCTTCCEEECTTSCCS-SCCCCTTCTTCCEEECT
T ss_pred             eCCCCCCccccChhhccCCCCCCEEECCCCccc-ccccccccccccEEECc
Confidence            8887 45556664 5777788888888887744 34543  2244555443

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.45  E-value=9.7e-13  Score=135.67  Aligned_cols=88  Identities=17%  Similarity=0.150  Sum_probs=73.4

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      |++|+.|+|++|.+....+ .+..+++|+.|++++|.+. .+|.. |.++++|+.|+|++|.+. +..|..|+.+++|+.
T Consensus        98 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~  175 (597)
T 3oja_B           98 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN  175 (597)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCE
T ss_pred             CCCCCEEECCCCcCCCCCHHHHcCCCCCCEEEeeCCCCC-CCCHHHhccCCCCCEEEeeCCcCC-CCChhhhhcCCcCcE
Confidence            5789999999998554433 3567788999999999998 55554 589999999999999998 667778999999999


Q ss_pred             EEccCCCCCccc
Q 040119           79 LHLSGNNFFTLP   90 (366)
Q Consensus        79 L~Ls~N~~~~lP   90 (366)
                      |+|++|.++.+|
T Consensus       176 L~L~~N~l~~~~  187 (597)
T 3oja_B          176 LQLSSNRLTHVD  187 (597)
T ss_dssp             EECTTSCCSBCC
T ss_pred             EECcCCCCCCcC
Confidence            999999988665

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.45  E-value=9.9e-13  Score=124.62  Aligned_cols=101  Identities=19%  Similarity=0.253  Sum_probs=57.4

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+..  +| .+..+++|+.|+|
T Consensus        41 ~~L~~L~l~~~~i~~l-~~~~~l~~L~~L~L~~n~i~-~~~~-~~~l~~L~~L~L~~n~l~~--~~-~~~~l~~L~~L~l  114 (308)
T 1h6u_A           41 DGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLDL  114 (308)
T ss_dssp             HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEEC
T ss_pred             CCcCEEEeeCCCccCc-hhhhccCCCCEEEccCCcCC-CChh-HccCCCCCEEEccCCcCCC--ch-hhcCCCCCCEEEC
Confidence            3566666666653322 23344455666666666665 3444 5666666666666666642  33 4556666666666


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      ++|.++.+|. +..+++|+.|++++|++
T Consensus       115 ~~n~l~~~~~-l~~l~~L~~L~l~~n~l  141 (308)
T 1h6u_A          115 TSTQITDVTP-LAGLSNLQVLYLDLNQI  141 (308)
T ss_dssp             TTSCCCCCGG-GTTCTTCCEEECCSSCC
T ss_pred             CCCCCCCchh-hcCCCCCCEEECCCCcc
Confidence            6666665553 55666666666666653

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.45  E-value=6.6e-13  Score=133.89  Aligned_cols=124  Identities=17%  Similarity=0.143  Sum_probs=83.1

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCC--CCCccCCCCCCCCEEE
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEG--AIPSGIGNLCSLEELH   80 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~sL~~L~   80 (366)
                      +|+.|++++|.... ......++.|+.|++++|.+.+.+|..+..+++|+.|+|++|++. +  .+|..++.+++|+.|+
T Consensus       303 ~L~~L~l~~n~l~~-~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          303 NIKNFTVSGTRMVH-MLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK-ELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCC-BHHHHHHHHTTCTTCCEEE
T ss_pred             ceeEEEcCCCcccc-ccchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccC-ccccchHHHhhCCCCCEEE
Confidence            46666666665322 111245566788888888887667777778888888888888876 3  3556677788888888


Q ss_pred             ccCCCCCc-cchh-hhCCCCccEEEccCCcCccCCCC-CCcccceecccCC
Q 040119           81 LSGNNFFT-LPAS-IYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC  128 (366)
Q Consensus        81 Ls~N~~~~-lP~~-i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c  128 (366)
                      |++|.+.. +|.. +..+++|+.|++++|++.+.+|. +|+.|+.|+++++
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N  431 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSN  431 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSS
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCC
Confidence            88888875 7754 66777888888888876655442 2345555555443

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.45  E-value=1.9e-13  Score=140.33  Aligned_cols=155  Identities=18%  Similarity=0.122  Sum_probs=74.3

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCC-ccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLP-SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP-~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|........+..+++|+.|++++|.+.+..| ..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus       376 ~~L~~L~L~~n~l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~  454 (606)
T 3vq2_A          376 NSLRHLDLSFNGAIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTK-IDFDGIFLGLTSLNTLK  454 (606)
T ss_dssp             SCCCEEECCSCSEEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCE-ECCTTTTTTCTTCCEEE
T ss_pred             CcccEeECCCCccccchhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCC-ccchhhhcCCCCCCEEE
Confidence            34444444444422211223334445555555555543333 34455555555555555554 44455555555555555


Q ss_pred             ccCCCCCc--cchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119           81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ  158 (366)
Q Consensus        81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~  158 (366)
                      |++|.+..  +|..+..+++|+.|+|++|++.+..|.   .+.     ++++|+.|+++     .+.+.+ .+|.+|...
T Consensus       455 l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~-----~l~~L~~L~Ls-----~N~l~~-~~~~~~~~l  520 (606)
T 3vq2_A          455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG---VFD-----TLHRLQLLNMS-----HNNLLF-LDSSHYNQL  520 (606)
T ss_dssp             CTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT---TTT-----TCTTCCEEECC-----SSCCSC-EEGGGTTTC
T ss_pred             CCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh---hhc-----ccccCCEEECC-----CCcCCC-cCHHHccCC
Confidence            55555542  344555555555555555554432221   111     34455555554     233322 246666655


Q ss_pred             CCCCceEEEECCCCCC
Q 040119          159 NNEGSSITISTPPKTY  174 (366)
Q Consensus       159 ~~~g~~~~l~L~~n~~  174 (366)
                      .   ++.+++|+.|.+
T Consensus       521 ~---~L~~L~l~~N~l  533 (606)
T 3vq2_A          521 Y---SLSTLDCSFNRI  533 (606)
T ss_dssp             T---TCCEEECTTSCC
T ss_pred             C---cCCEEECCCCcC
Confidence            5   566777777666

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=99.45  E-value=5.9e-13  Score=143.14  Aligned_cols=111  Identities=14%  Similarity=0.152  Sum_probs=82.3

Q ss_pred             CCccEEEeeCCCCCCCCCC---cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCC-CC
Q 040119            2 KNLKELSFRGCKGSPSSAS---WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCS-LE   77 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~---~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~s-L~   77 (366)
                      ++|+.|+|++|.+. ..+.   +..+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+.  .+|..++.+++ |+
T Consensus       548 ~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~--~lp~~l~~l~~~L~  622 (876)
T 4ecn_A          548 PKIQIFYMGYNNLE-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE--EIPEDFCAFTDQVE  622 (876)
T ss_dssp             TTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS--CCCTTSCEECTTCC
T ss_pred             CCccEEEeeCCcCC-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc--cchHHHhhccccCC
Confidence            57777788777765 3333   455667888888888877 777 6778888888888888875  37777888877 88


Q ss_pred             EEEccCCCCCccchhhhCCCC--ccEEEccCCcCccCCCCCC
Q 040119           78 ELHLSGNNFFTLPASIYRLSK--LSKIFLKDCKMLQNLPRLP  117 (366)
Q Consensus        78 ~L~Ls~N~~~~lP~~i~~L~~--L~~L~L~~n~~l~~lp~lp  117 (366)
                      .|+|++|.|+.+|..+..++.  |+.|+|++|++.+.+|.+|
T Consensus       623 ~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~  664 (876)
T 4ecn_A          623 GLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS  664 (876)
T ss_dssp             EEECCSSCCCSCCSCCCTTCSSCEEEEECCSSCTTTTSSSCS
T ss_pred             EEECcCCCCCcCchhhhccccCCCCEEECcCCcCCCccccch
Confidence            888888888877877666654  8888888888777666665

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.45  E-value=4.2e-13  Score=121.14  Aligned_cols=127  Identities=17%  Similarity=0.128  Sum_probs=105.9

Q ss_pred             CCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +.++.|+|++|.+....  ..+..+++|+.|++++|.+.+..|..|..+++|+.|+|++|.+. +..|..|..+++|++|
T Consensus        32 ~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  110 (220)
T 2v70_A           32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTL  110 (220)
T ss_dssp             TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-CCCGGGGTTCSSCCEE
T ss_pred             CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccC-ccCHhHhcCCcCCCEE
Confidence            36789999999966542  33567788999999999999766778999999999999999997 5556679999999999


Q ss_pred             EccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|.|+.+ |..+..+++|+.|+|++|++.+..|   ..+.     ++++|+.++++
T Consensus       111 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~---~~~~-----~l~~L~~L~L~  161 (220)
T 2v70_A          111 MLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAP---GAFD-----TLHSLSTLNLL  161 (220)
T ss_dssp             ECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCT---TTTT-----TCTTCCEEECC
T ss_pred             ECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECH---HHhc-----CCCCCCEEEec
Confidence            9999999977 6789999999999999999665333   3343     67788888887

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.44  E-value=1.5e-13  Score=130.08  Aligned_cols=107  Identities=18%  Similarity=0.120  Sum_probs=65.9

Q ss_pred             CCccEEEeeCCCCCCCCCCc---CCCCCccEEECcCCCCCCCCC----ccCCCCCCCcEEEeecCCCCCCCCCccCCCCC
Q 040119            2 KNLKELSFRGCKGSPSSASW---FLPFPINLMRWSSDPMALSLP----SSLSGLCSLTKLDISYCDLGEGAIPSGIGNLC   74 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~---~~~~~L~~L~ls~n~l~~~lP----~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~   74 (366)
                      ++|++|+|++|......+..   ..+.+|+.|++++|.+.+..|    ..+..+++|+.|+|++|.+. +..|..++.++
T Consensus        91 ~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~-~~~~~~~~~l~  169 (310)
T 4glp_A           91 SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSP-AFSCEQVRAFP  169 (310)
T ss_dssp             SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSC-CCCTTSCCCCT
T ss_pred             CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcc-hhhHHHhccCC
Confidence            45777888877744332222   445667777777777765444    23445667777777777775 45556677777


Q ss_pred             CCCEEEccCCCCCc---cch--hhhCCCCccEEEccCCcC
Q 040119           75 SLEELHLSGNNFFT---LPA--SIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        75 sL~~L~Ls~N~~~~---lP~--~i~~L~~L~~L~L~~n~~  109 (366)
                      +|++|+|++|++..   +|.  .+..+++|++|+|++|++
T Consensus       170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l  209 (310)
T 4glp_A          170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGM  209 (310)
T ss_dssp             TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCC
T ss_pred             CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCC
Confidence            77777777776642   322  235666666666666664

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.43  E-value=2.2e-13  Score=128.10  Aligned_cols=108  Identities=21%  Similarity=0.197  Sum_probs=82.0

Q ss_pred             CCCccEEEeeCCCCCCC---CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPS---SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCS   75 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~---~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~s   75 (366)
                      +++|++|+|++|.....   ......+.+|+.|++++|.+. .+|..+..+++|+.|+|++|.+..  +|  ..+..+++
T Consensus        51 l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~--~~~~~~~~~l~~  127 (306)
T 2z66_A           51 LTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ--MSEFSVFLSLRN  127 (306)
T ss_dssp             CTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEES--STTTTTTTTCTT
T ss_pred             cccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccc--cccchhhhhccC
Confidence            46788888888875422   122334677888888888886 677778888888888888888863  44  47888888


Q ss_pred             CCEEEccCCCCCc-cchhhhCCCCccEEEccCCcCcc
Q 040119           76 LEELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        76 L~~L~Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |+.|+|++|.+.. .|..+..+++|+.|++++|++.+
T Consensus       128 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~  164 (306)
T 2z66_A          128 LIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQE  164 (306)
T ss_dssp             CCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGG
T ss_pred             CCEEECCCCcCCccchhhcccCcCCCEEECCCCcccc
Confidence            8888888888884 45667888888888888888654

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.43  E-value=5.8e-13  Score=123.50  Aligned_cols=133  Identities=20%  Similarity=0.294  Sum_probs=105.2

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~  103 (366)
                      ..|+.|++++|.+....+..+.++++|+.|+|++|.+. +..+..+..+++|++|+|++|.++.++ ..+.++++|+.|+
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  106 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  106 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEE
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCC-ccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEE
Confidence            56899999999998655557889999999999999997 444567899999999999999999766 6788999999999


Q ss_pred             ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +++|++.+ ++..  .     +.++++|+.|+++     .+.+.+-.+|.+|....   ++..++|+.|.+
T Consensus       107 l~~n~l~~-~~~~--~-----~~~l~~L~~L~l~-----~n~l~~~~l~~~~~~l~---~L~~L~Ls~N~l  161 (276)
T 2z62_A          107 AVETNLAS-LENF--P-----IGHLKTLKELNVA-----HNLIQSFKLPEYFSNLT---NLEHLDLSSNKI  161 (276)
T ss_dssp             CTTSCCCC-STTC--C-----CTTCTTCCEEECC-----SSCCCCCCCCGGGGGCT---TCCEEECCSSCC
T ss_pred             CCCCCccc-cCch--h-----cccCCCCCEEECc-----CCccceecCchhhccCC---CCCEEECCCCCC
Confidence            99998553 2221  2     3377888888887     45555545788888777   788889888877

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.43  E-value=1.7e-12  Score=115.47  Aligned_cols=110  Identities=19%  Similarity=0.233  Sum_probs=92.7

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++|++|+|++|++....+ .+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus        51 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L  129 (208)
T 2o6s_A           51 LTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDL  129 (208)
T ss_dssp             CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             cccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCc-ccCHhHhccCCcCCEE
Confidence            5789999999998554333 3456788999999999998555555789999999999999997 4445568999999999


Q ss_pred             EccCCCCCccchh-hhCCCCccEEEccCCcCcc
Q 040119           80 HLSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        80 ~Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~  111 (366)
                      +|++|.++.+|.. +..+++|+.|++++|++.+
T Consensus       130 ~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~  162 (208)
T 2o6s_A          130 RLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC  162 (208)
T ss_dssp             ECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC
T ss_pred             ECCCCccceeCHHHhccCCCccEEEecCCCeec
Confidence            9999999988764 7899999999999998664

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.43  E-value=3.5e-13  Score=138.29  Aligned_cols=156  Identities=14%  Similarity=0.106  Sum_probs=128.3

Q ss_pred             CCCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCC-CCCccCCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEG-AIPSGIGNLCSLE   77 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~-~lP~~i~~L~sL~   77 (366)
                      +++|+.|+|++|......  ..+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. + .+|..++.+++|+
T Consensus       398 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L~  476 (606)
T 3vq2_A          398 LEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFK-DNTLSNVFANTTNLT  476 (606)
T ss_dssp             CTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEG-GGEECSCCTTCTTCC
T ss_pred             CCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCC-CcchHHhhccCCCCC
Confidence            578999999999844433  35667788999999999999889999999999999999999997 5 4799999999999


Q ss_pred             EEEccCCCCCcc-chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccc
Q 040119           78 ELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFE  156 (366)
Q Consensus        78 ~L~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~  156 (366)
                      .|+|++|.++.+ |..+.++++|+.|+|++|++.+.+   |..+.     ++++|+.|+++     .+.+.  .+|.+|.
T Consensus       477 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~---~~~~~-----~l~~L~~L~l~-----~N~l~--~~p~~~~  541 (606)
T 3vq2_A          477 FLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD---SSHYN-----QLYSLSTLDCS-----FNRIE--TSKGILQ  541 (606)
T ss_dssp             EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEE---GGGTT-----TCTTCCEEECT-----TSCCC--CEESCGG
T ss_pred             EEECCCCcCCccChhhhcccccCCEEECCCCcCCCcC---HHHcc-----CCCcCCEEECC-----CCcCc--ccCHhHh
Confidence            999999999965 678999999999999999976533   33444     77888888887     44444  5888866


Q ss_pred             cCCCCCceEEEECCCCCC
Q 040119          157 YQNNEGSSITISTPPKTY  174 (366)
Q Consensus       157 ~~~~~g~~~~l~L~~n~~  174 (366)
                      ...  .++..+++..|.+
T Consensus       542 ~l~--~~L~~l~l~~N~~  557 (606)
T 3vq2_A          542 HFP--KSLAFFNLTNNSV  557 (606)
T ss_dssp             GSC--TTCCEEECCSCCC
T ss_pred             hhc--ccCcEEEccCCCc
Confidence            543  1478899999887

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.43  E-value=6.5e-13  Score=117.28  Aligned_cols=122  Identities=18%  Similarity=0.221  Sum_probs=94.5

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCc-cCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPS-SLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~-sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      +.|++++|.+... +. .....|+.|++++|.+.+..+. .+..+++|+.|+|++|.++ +..|..|+.+++|+.|+|++
T Consensus        11 ~~l~~s~~~l~~i-p~-~~~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~   87 (192)
T 1w8a_A           11 TTVDCTGRGLKEI-PR-DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGE   87 (192)
T ss_dssp             TEEECTTSCCSSC-CS-CCCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCcCcC-cc-CCCCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC-CcCHhHcCCcccCCEEECCC
Confidence            6788988875322 22 1223799999999999854443 3789999999999999998 66788999999999999999


Q ss_pred             CCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |.|+.+|. .+.++++|+.|+|++|++.+..|.   .+.     .+++|+.++++
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~---~~~-----~l~~L~~L~L~  134 (192)
T 1w8a_A           88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPG---SFE-----HLNSLTSLNLA  134 (192)
T ss_dssp             CCCCEECSSSSTTCTTCCEEECCSSCCCEECTT---SST-----TCTTCCEEECT
T ss_pred             CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHH---Hhh-----cCCCCCEEEeC
Confidence            99997764 588999999999999997764443   333     56677777776

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.42  E-value=3.7e-12  Score=131.01  Aligned_cols=111  Identities=24%  Similarity=0.330  Sum_probs=63.0

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.|+|++|.+.. .+... .++|+.|++++|.+. .+|   ..+++|+.|+|++|+++ + +|. ++.  +|+.|+|+
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l-~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~-~-ip~-l~~--~L~~L~Ls  128 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL-PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLS-T-LPE-LPA--SLKHLDVD  128 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC-CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCS-C-CCC-CCT--TCCEEECC
T ss_pred             CccEEEeCCCCCCc-cCHhH-cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCC-C-cch-hhc--CCCEEECC
Confidence            56666676666433 22211 245666666666665 555   34566666666666665 2 555 443  56666666


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC  128 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c  128 (366)
                      +|.|+.+|.   .+++|+.|+|++|++.+ +|..+++|+.|+++++
T Consensus       129 ~N~l~~lp~---~l~~L~~L~Ls~N~l~~-lp~~l~~L~~L~Ls~N  170 (571)
T 3cvr_A          129 NNQLTMLPE---LPALLEYINADNNQLTM-LPELPTSLEVLSVRNN  170 (571)
T ss_dssp             SSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSS
T ss_pred             CCcCCCCCC---cCccccEEeCCCCccCc-CCCcCCCcCEEECCCC
Confidence            666666665   45566666666665443 5555555555555544

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.42  E-value=3.1e-12  Score=124.43  Aligned_cols=104  Identities=15%  Similarity=0.108  Sum_probs=80.1

Q ss_pred             CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +++|++|+|++|...... ..+..+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.+. +..|..++.+++|+.
T Consensus        92 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~  169 (390)
T 3o6n_A           92 AHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQN  169 (390)
T ss_dssp             CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTSSCTTCCE
T ss_pred             CCCcCEEECCCCCCCcCCHHHhcCCCCCCEEECCCCccC-cCCHHHhcCCCCCcEEECCCCccC-ccChhhccCCCCCCE
Confidence            578999999999855443 33567788999999999998 66665 588999999999999997 556777999999999


Q ss_pred             EEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119           79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      |+|++|.++.++  +..+++|+.|++++|.
T Consensus       170 L~l~~n~l~~~~--~~~l~~L~~L~l~~n~  197 (390)
T 3o6n_A          170 LQLSSNRLTHVD--LSLIPSLFHANVSYNL  197 (390)
T ss_dssp             EECCSSCCSBCC--GGGCTTCSEEECCSSC
T ss_pred             EECCCCcCCccc--cccccccceeeccccc
Confidence            999999998765  3344444444444443

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.41  E-value=3.7e-13  Score=136.41  Aligned_cols=112  Identities=21%  Similarity=0.205  Sum_probs=84.1

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|..... ...+..+++|++|++++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+
T Consensus        26 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  104 (549)
T 2z81_A           26 AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLS-SLSSSWFGPLSSLKYLN  104 (549)
T ss_dssp             TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCC-SCCHHHHTTCTTCCEEE
T ss_pred             CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccC-ccCHHHhccCCCCcEEE
Confidence            4688888888875433 334556677888888888888666677888888888888888886 44445588888888888


Q ss_pred             ccCCCCCc--cchhhhCCCCccEEEccCCcCccCCC
Q 040119           81 LSGNNFFT--LPASIYRLSKLSKIFLKDCKMLQNLP  114 (366)
Q Consensus        81 Ls~N~~~~--lP~~i~~L~~L~~L~L~~n~~l~~lp  114 (366)
                      |++|.++.  +|..++++++|+.|++++|+..+.+|
T Consensus       105 Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~  140 (549)
T 2z81_A          105 LMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIR  140 (549)
T ss_dssp             CTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEEC
T ss_pred             CCCCcccccchhhhhhccCCccEEECCCCccccccC
Confidence            88888874  46678888888888888887655554

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.41  E-value=5.4e-12  Score=119.95  Aligned_cols=104  Identities=17%  Similarity=0.215  Sum_probs=77.7

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.++++++.......  ...+.++.|++++|.+.+..+..+.++++|++|+|++|.+. +..|..|+.+++|++|+|+
T Consensus        32 ~l~~l~~~~~~l~~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLEKVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS-KISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCCSCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCccccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCC-eeCHHHhcCCCCCCEEECC
Confidence            57778887776432211  12356888888888887555557888888888888888887 5557888888888888888


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCcc
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      +|.++.+|..+.  ++|+.|++++|++.+
T Consensus       109 ~n~l~~l~~~~~--~~L~~L~l~~n~l~~  135 (330)
T 1xku_A          109 KNQLKELPEKMP--KTLQELRVHENEITK  135 (330)
T ss_dssp             SSCCSBCCSSCC--TTCCEEECCSSCCCB
T ss_pred             CCcCCccChhhc--ccccEEECCCCcccc
Confidence            888888887654  688888888887554

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.41  E-value=1.9e-12  Score=128.12  Aligned_cols=128  Identities=16%  Similarity=0.193  Sum_probs=100.4

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCC-CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSL-PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~l-P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|++|+|++|.+... ...+..+.+|+.|++++|.+.+.+ |..|.++++|++|+|++|.+. +..|..|+.+++|++|
T Consensus        30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L  108 (455)
T 3v47_A           30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFL-QLETGAFNGLANLEVL  108 (455)
T ss_dssp             TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTC-EECTTTTTTCTTCCEE
T ss_pred             CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccC-ccChhhccCcccCCEE
Confidence            5789999999986543 344667788999999999987555 567899999999999999997 6678899999999999


Q ss_pred             EccCCCCCc-cchh--hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFT-LPAS--IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~-lP~~--i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|.++. +|..  +.++++|+.|+|++|++.+..|.   .+    +.++++|+.|+++
T Consensus       109 ~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~---~~----~~~l~~L~~L~L~  162 (455)
T 3v47_A          109 TLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPA---SF----FLNMRRFHVLDLT  162 (455)
T ss_dssp             ECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCC---GG----GGGCTTCCEEECT
T ss_pred             eCCCCCCCccccCcccccCcccCCEEECCCCccCccCcc---cc----cCCCCcccEEeCC
Confidence            999999984 4544  88999999999999997654343   10    1245556665554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.41  E-value=1.3e-12  Score=115.68  Aligned_cols=120  Identities=18%  Similarity=0.205  Sum_probs=97.3

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN   84 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N   84 (366)
                      +.+++++|.+.....  .....|+.|++++|.+. .+|..+..+++|+.|+|++|.+. +..|..|..+++|+.|+|++|
T Consensus        13 ~~l~~~~~~l~~ip~--~~~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~-~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLKVLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCSSCCS--CCCTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCCcCCC--CCCCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCC-EeCHhHccCCCCCCEEECCCC
Confidence            578888887443221  12357999999999998 89999999999999999999998 555678999999999999999


Q ss_pred             CCCccch-hhhCCCCccEEEccCCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119           85 NFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        85 ~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~  137 (366)
                      .|+.+|. .+.++++|+.|+|++|++..    +|.. +.     ++++|+.+++.
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~----~~~~~~~-----~l~~L~~L~L~  134 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISV----VPEGAFN-----DLSALSHLAIG  134 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCB----CCTTTTT-----TCTTCCEEECC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCe----eChhhhh-----cCccccEEEeC
Confidence            9998864 79999999999999999553    3322 32     66778888877

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.41  E-value=1.8e-13  Score=144.64  Aligned_cols=110  Identities=19%  Similarity=0.215  Sum_probs=85.0

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|.+.........+.+|+.|+|++|.+. .+|..|.+|++|+.|+|++|.|+.  +|..|+.|++|++|+
T Consensus       223 l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~  299 (727)
T 4b8c_D          223 DQLWHALDLSNLQIFNISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLTS--LPAELGSCFQLKYFY  299 (727)
T ss_dssp             CCCCCEEECTTSCCSCCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCSS--CCSSGGGGTTCSEEE
T ss_pred             CCCCcEEECCCCCCCCCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCCc--cChhhcCCCCCCEEE
Confidence            45788888888875533333345677888888888887 788888888888888888888863  788888888888888


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNL  113 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~l  113 (366)
                      |++|.|+.+|..|++|++|+.|+|++|++.+.+
T Consensus       300 L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~  332 (727)
T 4b8c_D          300 FFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQF  332 (727)
T ss_dssp             CCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHH
T ss_pred             CCCCCCCccChhhhcCCCccEEeCCCCccCCCC
Confidence            888888888888888888888888888876544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.40  E-value=4.3e-13  Score=116.49  Aligned_cols=127  Identities=18%  Similarity=0.164  Sum_probs=96.4

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCC-CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC-CCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLP-FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI-GNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~-~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i-~~L~sL~~   78 (366)
                      +++|+.|+|++|.+... +..... ++|+.|++++|.+.+ + ..+..+++|+.|+|++|.+..  +|..+ +.+++|+.
T Consensus        18 ~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~-~-~~l~~l~~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~   92 (176)
T 1a9n_A           18 AVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTE   92 (176)
T ss_dssp             TTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCE
T ss_pred             cCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCc-c-cccccCCCCCEEECCCCcccc--cCcchhhcCCCCCE
Confidence            36789999999986543 333333 489999999999984 4 568999999999999999963  66554 88999999


Q ss_pred             EEccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           79 LHLSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        79 L~Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |+|++|.|..+|.  .+..+++|+.|++++|++. .+|   .. +...+..+++|+.++++
T Consensus        93 L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~---~~-~~~~~~~l~~L~~Ld~~  148 (176)
T 1a9n_A           93 LILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKK---HY-RLYVIYKVPQVRVLDFQ  148 (176)
T ss_dssp             EECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GST---TH-HHHHHHHCTTCSEETTE
T ss_pred             EECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcH---hH-HHHHHHHCCccceeCCC
Confidence            9999999999987  8899999999999999854 233   22 00012367777777765

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.40  E-value=2.8e-12  Score=122.13  Aligned_cols=105  Identities=20%  Similarity=0.168  Sum_probs=73.1

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|..... ...+..+++|+.|++++|.+.+..|..+..+++|+.|+|++|.+.+  +|..+.  ++|++|+
T Consensus        54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~--~~L~~L~  129 (332)
T 2ft3_A           54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVE--IPPNLP--SSLVELR  129 (332)
T ss_dssp             TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCS--CCSSCC--TTCCEEE
T ss_pred             CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCc--cCcccc--ccCCEEE
Confidence            4577777777764432 2345556677777777777776667777777777777777777753  676655  6777777


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++|.++.+|. .+.++++|+.|++++|++.
T Consensus       130 l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~  160 (332)
T 2ft3_A          130 IHDNRIRKVPKGVFSGLRNMNCIEMGGNPLE  160 (332)
T ss_dssp             CCSSCCCCCCSGGGSSCSSCCEEECCSCCCB
T ss_pred             CCCCccCccCHhHhCCCccCCEEECCCCccc
Confidence            77777776664 4677788888888877753

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.40  E-value=9.3e-13  Score=134.72  Aligned_cols=106  Identities=17%  Similarity=0.153  Sum_probs=80.7

Q ss_pred             CccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEE
Q 040119            3 NLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELH   80 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~   80 (366)
                      ++++|+|++|++.. +...+..+++|++|+|++|.+.+..|.+|.+|++|++|+|++|++..  +| ..|..|++|++|+
T Consensus        53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~--l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQS--LALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCE--ECGGGGTTCTTCCEEE
T ss_pred             CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCC--CCHHHhcCCCCCCEEE
Confidence            67888888888543 33456677788888888888875555667888888888888888863  54 4578888888888


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|+++.+|. .|+++++|+.|+|++|++.
T Consensus       131 Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~  161 (635)
T 4g8a_A          131 AVETNLASLENFPIGHLKTLKELNVAHNLIQ  161 (635)
T ss_dssp             CTTSCCCCSTTCCCTTCTTCCEEECCSSCCC
T ss_pred             CCCCcCCCCChhhhhcCcccCeeccccCccc
Confidence            88888887765 5788888888888888754

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.40  E-value=5e-13  Score=135.41  Aligned_cols=159  Identities=15%  Similarity=0.137  Sum_probs=115.4

Q ss_pred             CCccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCC---ccCCCCCCCcEEEeecCCCCCCCCC---ccCCCCC
Q 040119            2 KNLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLP---SSLSGLCSLTKLDISYCDLGEGAIP---SGIGNLC   74 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP---~sl~~L~~L~~L~Ls~n~l~~~~lP---~~i~~L~   74 (366)
                      ++|+.|++++|........ +..+++|+.|++++|.+.+.+|   ..+..+++|+.|+|++|++..  +|   ..++.++
T Consensus       310 ~~L~~L~l~~n~l~~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~~~~~l~  387 (549)
T 2z81_A          310 EKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRS--MQKTGEILLTLK  387 (549)
T ss_dssp             TTCCEEEEESSCCCCCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCC--HHHHHHHGGGCT
T ss_pred             ccceEEEeccCccccCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccc--cccchhhhhcCC
Confidence            4678888888874422111 1346789999999999887654   336788899999999999863  44   3578889


Q ss_pred             CCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCC-CCCcccceecccC---------CcCccEeeCCCCCCccc
Q 040119           75 SLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIFLDG---------CVSLETLSDGYWRDCSI  144 (366)
Q Consensus        75 sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~~~~---------c~sL~~l~~~~f~~~~~  144 (366)
                      +|+.|+|++|+|+.+|..+..+++|++|++++|++.. +| .+|++++.|++++         +++|+.|+++     .+
T Consensus       388 ~L~~L~Ls~N~l~~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~~~~L~~L~Ls~N~l~~~~~~l~~L~~L~Ls-----~N  461 (549)
T 2z81_A          388 NLTSLDISRNTFHPMPDSCQWPEKMRFLNLSSTGIRV-VKTCIPQTLEVLDVSNNNLDSFSLFLPRLQELYIS-----RN  461 (549)
T ss_dssp             TCCEEECTTCCCCCCCSCCCCCTTCCEEECTTSCCSC-CCTTSCTTCSEEECCSSCCSCCCCCCTTCCEEECC-----SS
T ss_pred             CCCEEECCCCCCccCChhhcccccccEEECCCCCccc-ccchhcCCceEEECCCCChhhhcccCChhcEEECC-----CC
Confidence            9999999999999999888888999999999998553 43 4466888888765         4667777766     33


Q ss_pred             ccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          145 VVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      .+.  .||.+ ....   ++..++|+.|.+
T Consensus       462 ~l~--~ip~~-~~l~---~L~~L~Ls~N~l  485 (549)
T 2z81_A          462 KLK--TLPDA-SLFP---VLLVMKISRNQL  485 (549)
T ss_dssp             CCS--SCCCG-GGCT---TCCEEECCSSCC
T ss_pred             ccC--cCCCc-ccCc---cCCEEecCCCcc
Confidence            333  57764 2333   677888888777

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.40  E-value=2.3e-12  Score=117.00  Aligned_cols=167  Identities=12%  Similarity=0.105  Sum_probs=98.8

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCC-CCCCCCccCCCCCCCcEEEeec-CCCCCCCCCccCCCCCCCCE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDP-MALSLPSSLSGLCSLTKLDISY-CDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~sL~~   78 (366)
                      ++|+.|+|++|++... ...+..+++|+.|++++|. +....+..+.++++|+.|+|++ |.+. +..|..|..+++|+.
T Consensus        31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~-~i~~~~f~~l~~L~~  109 (239)
T 2xwt_C           31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLT-YIDPDALKELPLLKF  109 (239)
T ss_dssp             TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCC-EECTTSEECCTTCCE
T ss_pred             CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCee-EcCHHHhCCCCCCCE
Confidence            3677888888874433 2345566778888888886 6633344677778888888887 7775 333356777778888


Q ss_pred             EEccCCCCCccchhhhCCCCcc---EEEccCCcCccCCCC--C--Ccccc-eecccCCcCccEeeCCCCCCc---ccccC
Q 040119           79 LHLSGNNFFTLPASIYRLSKLS---KIFLKDCKMLQNLPR--L--PASIH-GIFLDGCVSLETLSDGYWRDC---SIVVP  147 (366)
Q Consensus        79 L~Ls~N~~~~lP~~i~~L~~L~---~L~L~~n~~l~~lp~--l--p~~L~-~L~~~~c~sL~~l~~~~f~~~---~~~l~  147 (366)
                      |+|++|.++.+|. +..+++|+   .|++++|..+..+|.  +  ...++ .|+++++ .++.++...|...   .+.+.
T Consensus       110 L~l~~n~l~~lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n-~l~~i~~~~~~~~~L~~L~L~  187 (239)
T 2xwt_C          110 LGIFNTGLKMFPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN-GFTSVQGYAFNGTKLDAVYLN  187 (239)
T ss_dssp             EEEEEECCCSCCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC-CCCEECTTTTTTCEEEEEECT
T ss_pred             EeCCCCCCccccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCC-CCcccCHhhcCCCCCCEEEcC
Confidence            8888888777775 66666666   778877722333332  1  12344 4544333 1222222222211   12222


Q ss_pred             CC----CC-CcccccC-CCCCceEEEECCCCCC
Q 040119          148 GS----EI-PEWFEYQ-NNEGSSITISTPPKTY  174 (366)
Q Consensus       148 g~----~i-P~~f~~~-~~~g~~~~l~L~~n~~  174 (366)
                      +.    .+ |.+|... .   ++..++++.|.+
T Consensus       188 ~n~~l~~i~~~~~~~l~~---~L~~L~l~~N~l  217 (239)
T 2xwt_C          188 KNKYLTVIDKDAFGGVYS---GPSLLDVSQTSV  217 (239)
T ss_dssp             TCTTCCEECTTTTTTCSB---CCSEEECTTCCC
T ss_pred             CCCCcccCCHHHhhcccc---CCcEEECCCCcc
Confidence            22    23 3455554 4   688899998887

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.40  E-value=9.1e-13  Score=135.53  Aligned_cols=123  Identities=18%  Similarity=0.175  Sum_probs=99.1

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      .|+.|+|++|.+... +.+..+.+|+.|++++|.+. .+|..++.+++|+.|+|++|.++.  +| .++.|++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~~l-p~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~--lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLTVL-CHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCSSC-CCGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCCCC-cCccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCC--Cc-ccCCCCCCcEEECC
Confidence            588999999986543 33666788999999999998 899999999999999999999973  78 89999999999999


Q ss_pred             CCCCCcc--chhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEee
Q 040119           83 GNNFFTL--PASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLS  135 (366)
Q Consensus        83 ~N~~~~l--P~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~  135 (366)
                      +|.|+.+  |..++.+++|+.|+|++|++.+..|....-+     ..+++|+.|+
T Consensus       517 ~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~~~l~-----~~lp~L~~L~  566 (567)
T 1dce_A          517 NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLA-----EMLPSVSSIL  566 (567)
T ss_dssp             SSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCTTHHH-----HHCTTCSEEE
T ss_pred             CCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHHHHHH-----HHCcccCccC
Confidence            9999977  8899999999999999999665333221111     1456666664

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.39  E-value=6.3e-13  Score=114.19  Aligned_cols=107  Identities=20%  Similarity=0.090  Sum_probs=94.7

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC--ccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP--SGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP--~~i~~L~sL~~   78 (366)
                      +++|+.|+|++|..... ..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+..  +|  ..+..+++|+.
T Consensus        48 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--~~~~~~l~~l~~L~~  124 (168)
T 2ell_A           48 FVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKD--ISTLEPLKKLECLKS  124 (168)
T ss_dssp             GGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCS--SGGGGGGSSCSCCCE
T ss_pred             CCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCc--chhHHHHhcCCCCCE
Confidence            47899999999996555 666677889999999999997688877789999999999999974  55  78999999999


Q ss_pred             EEccCCCCCccch----hhhCCCCccEEEccCCcCc
Q 040119           79 LHLSGNNFFTLPA----SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        79 L~Ls~N~~~~lP~----~i~~L~~L~~L~L~~n~~l  110 (366)
                      |+|++|.++.+|.    .+..+++|+.|++++|...
T Consensus       125 L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~  160 (168)
T 2ell_A          125 LDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ  160 (168)
T ss_dssp             EECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC
T ss_pred             EEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh
Confidence            9999999998886    7899999999999999843

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=99.39  E-value=2.3e-12  Score=129.87  Aligned_cols=135  Identities=16%  Similarity=0.162  Sum_probs=103.8

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCc---cchhhhCCCCccEEE
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFT---LPASIYRLSKLSKIF  103 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~---lP~~i~~L~~L~~L~  103 (366)
                      |+.|++++|.+. .++. ...+++|+.|+|++|.+. +.+|..++.+++|+.|+|++|+++.   +|..+..+++|+.|+
T Consensus       304 L~~L~l~~n~l~-~~~~-~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~  380 (520)
T 2z7x_B          304 IKNFTVSGTRMV-HMLC-PSKISPFLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLD  380 (520)
T ss_dssp             CSEEEEESSCCC-CCCC-CSSCCCCCEEECCSSCCC-TTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEE
T ss_pred             eeEEEcCCCccc-cccc-hhhCCcccEEEeECCccC-hhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEE
Confidence            444444444443 1211 268899999999999998 7889999999999999999999995   557899999999999


Q ss_pred             ccCCcCccCCCC----CCcccceecccCC-----------cCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEE
Q 040119          104 LKDCKMLQNLPR----LPASIHGIFLDGC-----------VSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITIS  168 (366)
Q Consensus       104 L~~n~~l~~lp~----lp~~L~~L~~~~c-----------~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~  168 (366)
                      +++|++.+.+|.    ..+.|+.|+++++           ++|+.|+++     .+.+.  .||.++....   ++..++
T Consensus       381 Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls-----~N~l~--~ip~~~~~l~---~L~~L~  450 (520)
T 2z7x_B          381 ISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLH-----SNKIK--SIPKQVVKLE---ALQELN  450 (520)
T ss_dssp             CCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECC-----SSCCC--CCCGGGGGCT---TCCEEE
T ss_pred             CCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECC-----CCccc--ccchhhhcCC---CCCEEE
Confidence            999998775653    1357788887766           467777766     34443  6898887655   788999


Q ss_pred             CCCCCC
Q 040119          169 TPPKTY  174 (366)
Q Consensus       169 L~~n~~  174 (366)
                      |..|.+
T Consensus       451 L~~N~l  456 (520)
T 2z7x_B          451 VASNQL  456 (520)
T ss_dssp             CCSSCC
T ss_pred             CCCCcC
Confidence            999888

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.39  E-value=1.5e-12  Score=133.52  Aligned_cols=164  Identities=16%  Similarity=0.094  Sum_probs=103.9

Q ss_pred             CCCccEEEeeCCCCCC--CCCCcCCCCCccEEECcCCCCCCCC--CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSP--SSASWFLPFPINLMRWSSDPMALSL--PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~--~~~~~~~~~~L~~L~ls~n~l~~~l--P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL   76 (366)
                      +++|++|+|++|....  +...+..+++|+.|++++|.+.+..  |..+..+++|+.|+|++|.+. +..|..++.+++|
T Consensus       324 l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L  402 (606)
T 3t6q_A          324 FPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL-SLKTEAFKECPQL  402 (606)
T ss_dssp             CTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE-EECTTTTTTCTTC
T ss_pred             cCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCC-cCCHHHhcCCccC
Confidence            4678888888887442  3333455677888888888876543  666778888888888888876 5567777778888


Q ss_pred             CEEEccCCCCCcc-c-hhhhCCCCccEEEccCCcCccCCCCC---CcccceecccCC----------------cCccEee
Q 040119           77 EELHLSGNNFFTL-P-ASIYRLSKLSKIFLKDCKMLQNLPRL---PASIHGIFLDGC----------------VSLETLS  135 (366)
Q Consensus        77 ~~L~Ls~N~~~~l-P-~~i~~L~~L~~L~L~~n~~l~~lp~l---p~~L~~L~~~~c----------------~sL~~l~  135 (366)
                      +.|+|++|.+... | ..+.++++|+.|++++|++.+..|..   .++|+.|+++++                ++|+.|+
T Consensus       403 ~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~  482 (606)
T 3t6q_A          403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILV  482 (606)
T ss_dssp             SEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEE
T ss_pred             CeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEE
Confidence            8888888877743 3 34777778888888887765544432   234444444333                3444444


Q ss_pred             CCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          136 DGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       136 ~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      ++     .+.+.+ .+|.+|....   ++..++|+.|.+
T Consensus       483 Ls-----~n~l~~-~~~~~~~~l~---~L~~L~Ls~N~l  512 (606)
T 3t6q_A          483 LS-----FCDLSS-IDQHAFTSLK---MMNHVDLSHNRL  512 (606)
T ss_dssp             CT-----TSCCCE-ECTTTTTTCT---TCCEEECCSSCC
T ss_pred             CC-----CCccCc-cChhhhcccc---CCCEEECCCCcc
Confidence            43     222221 2355555544   566677766665

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.39  E-value=1.2e-12  Score=118.87  Aligned_cols=145  Identities=10%  Similarity=0.114  Sum_probs=99.6

Q ss_pred             CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCC-ccCCCCCCCCEEEccC-CCCCccc-hhhhCCCC
Q 040119           23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIP-SGIGNLCSLEELHLSG-NNFFTLP-ASIYRLSK   98 (366)
Q Consensus        23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP-~~i~~L~sL~~L~Ls~-N~~~~lP-~~i~~L~~   98 (366)
                      ....|+.|++++|.+.+..+..+.++++|+.|+|++|. +.  .+| ..|..+++|++|+|++ |.++.+| ..+.++++
T Consensus        29 ~~~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~  106 (239)
T 2xwt_C           29 LPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQ--QLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPL  106 (239)
T ss_dssp             CCTTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCC--EECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTT
T ss_pred             CCCcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcc--eeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCC
Confidence            34579999999999986555589999999999999997 75  355 5789999999999998 9999887 47889999


Q ss_pred             ccEEEccCCcCccCCCCC--Ccccc---eecccCCcCccEeeCCCCCCc-----ccccCCC---CCCcccccCCCCCceE
Q 040119           99 LSKIFLKDCKMLQNLPRL--PASIH---GIFLDGCVSLETLSDGYWRDC-----SIVVPGS---EIPEWFEYQNNEGSSI  165 (366)
Q Consensus        99 L~~L~L~~n~~l~~lp~l--p~~L~---~L~~~~c~sL~~l~~~~f~~~-----~~~l~g~---~iP~~f~~~~~~g~~~  165 (366)
                      |+.|++++|++.+ +|.+  ..+++   .|+++++..++.++...|.++     .+.+.+.   .||.+.....   ++.
T Consensus       107 L~~L~l~~n~l~~-lp~~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~~---~L~  182 (239)
T 2xwt_C          107 LKFLGIFNTGLKM-FPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNGT---KLD  182 (239)
T ss_dssp             CCEEEEEEECCCS-CCCCTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTTC---EEE
T ss_pred             CCEEeCCCCCCcc-ccccccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCCC---CCC
Confidence            9999999998654 6642  12333   555555444444443323222     1122222   2444332223   566


Q ss_pred             EEECCCCC
Q 040119          166 TISTPPKT  173 (366)
Q Consensus       166 ~l~L~~n~  173 (366)
                      .++|+.|.
T Consensus       183 ~L~L~~n~  190 (239)
T 2xwt_C          183 AVYLNKNK  190 (239)
T ss_dssp             EEECTTCT
T ss_pred             EEEcCCCC
Confidence            77777763

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.39  E-value=3.1e-12  Score=131.30  Aligned_cols=108  Identities=24%  Similarity=0.183  Sum_probs=48.4

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|...........+++|+.|++++|.+....|..+..+++|+.|+|++|.+. +.+|.. ++.+++|+.|+
T Consensus       278 ~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~l~~L~~L~  356 (606)
T 3t6q_A          278 SGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKR-LELGTGCLENLENLRELD  356 (606)
T ss_dssp             TTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSC-CBCCSSTTTTCTTCCEEE
T ss_pred             cCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcc-cccchhhhhccCcCCEEE
Confidence            3444444444443322222233344444444444444333444444444444444444444 334332 44555555555


Q ss_pred             ccCCCCCcc---chhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTL---PASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~l---P~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|.++.+   |..+.++++|+.|++++|++.
T Consensus       357 l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~  389 (606)
T 3t6q_A          357 LSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPL  389 (606)
T ss_dssp             CCSSCCCEEEESTTTTTTCTTCCEEECCSCSCE
T ss_pred             CCCCccccccCcchhcccCCCCCEEECCCCcCC
Confidence            555555433   334455555555555555443

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=99.39  E-value=3.2e-12  Score=130.73  Aligned_cols=133  Identities=20%  Similarity=0.289  Sum_probs=106.5

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~  103 (366)
                      ..++.|+|++|.|....|.+|.++++|++|+|++|+|. +..|..|..|++|++|+|++|+|+.+|. .+.+|++|++|+
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~  130 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLV  130 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEE
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEE
Confidence            46999999999999655678999999999999999997 4445679999999999999999999885 689999999999


Q ss_pred             ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      |++|++.+ +|..  .+.     ++++|+.|+++     .+.+.+..+|..+....   .+..++|+.|.+
T Consensus       131 Ls~N~l~~-l~~~--~~~-----~L~~L~~L~Ls-----~N~l~~~~~~~~~~~l~---~L~~L~L~~N~l  185 (635)
T 4g8a_A          131 AVETNLAS-LENF--PIG-----HLKTLKELNVA-----HNLIQSFKLPEYFSNLT---NLEHLDLSSNKI  185 (635)
T ss_dssp             CTTSCCCC-STTC--CCT-----TCTTCCEEECC-----SSCCCCCCCCGGGGGCT---TCCEEECCSSCC
T ss_pred             CCCCcCCC-CChh--hhh-----cCcccCeeccc-----cCccccCCCchhhccch---hhhhhcccCccc
Confidence            99998553 3321  233     77888888877     55555556777777666   677777777766

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.39  E-value=1.6e-12  Score=132.05  Aligned_cols=128  Identities=18%  Similarity=0.148  Sum_probs=95.7

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|.... +...+..+++|+.|++++|.+.+..|..|.++++|++|+|++|.+. +..|..|+.+++|++|+
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~  106 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLV  106 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-EECTTTTTTCTTCCEEE
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCC-ccCHhhhcCcccccccc
Confidence            468889999888543 3335666788999999999888666677888999999999999887 44557888899999999


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|+++.+|. .++++++|++|++++|.+...  .+|..+.     ++++|+.|+++
T Consensus       107 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~--~lp~~~~-----~l~~L~~L~l~  157 (570)
T 2z63_A          107 AVETNLASLENFPIGHLKTLKELNVAHNLIQSF--KLPEYFS-----NLTNLEHLDLS  157 (570)
T ss_dssp             CTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCC--CCCGGGG-----GCTTCCEEECT
T ss_pred             ccccccccCCCccccccccccEEecCCCcccee--cChhhhc-----ccCCCCEEeCc
Confidence            99998888775 688889999999998885531  1233333     45555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.39  E-value=3.8e-12  Score=121.24  Aligned_cols=159  Identities=17%  Similarity=0.205  Sum_probs=110.0

Q ss_pred             CCCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++|++|+|++|..... ...+..+++|+.|++++|.+. .+|..+.  ++|+.|+|++|.+. +..+..+..+++|+.|
T Consensus        77 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L  152 (332)
T 2ft3_A           77 LQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCI  152 (332)
T ss_dssp             CTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCC-SCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEE
T ss_pred             CCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCC-ccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEE
Confidence            57899999999986543 334556788999999999997 7887665  78999999999997 3334568899999999


Q ss_pred             EccCCCCC---ccchhhhCCCCccEEEccCCcCccCCC-CCCcccceecccCC-------------cCccEeeCCCCCCc
Q 040119           80 HLSGNNFF---TLPASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIFLDGC-------------VSLETLSDGYWRDC  142 (366)
Q Consensus        80 ~Ls~N~~~---~lP~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~~~~c-------------~sL~~l~~~~f~~~  142 (366)
                      ++++|.++   ..|..+..+ +|+.|++++|++.+ +| .++++|+.|+++++             ++|+.|+++     
T Consensus       153 ~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~-----  225 (332)
T 2ft3_A          153 EMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLG-----  225 (332)
T ss_dssp             ECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCC-----
T ss_pred             ECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cCccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECC-----
Confidence            99999987   345667777 88888998888654 44 34566777765543             344444443     


Q ss_pred             ccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          143 SIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       143 ~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      .+.+.+ ..|.+|....   ++..++|..|.+
T Consensus       226 ~N~l~~-~~~~~~~~l~---~L~~L~L~~N~l  253 (332)
T 2ft3_A          226 HNQIRM-IENGSLSFLP---TLRELHLDNNKL  253 (332)
T ss_dssp             SSCCCC-CCTTGGGGCT---TCCEEECCSSCC
T ss_pred             CCcCCc-CChhHhhCCC---CCCEEECCCCcC
Confidence            222221 1234555544   566677776665

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.39  E-value=6.7e-13  Score=127.57  Aligned_cols=107  Identities=20%  Similarity=0.247  Sum_probs=75.8

Q ss_pred             CCCccEEEeeCCCCCCCCCC-cCCCCCccEEECcCCCCCCCCCc--cCCCCCCCcEEEeecCC-CCCCCCCccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSAS-WFLPFPINLMRWSSDPMALSLPS--SLSGLCSLTKLDISYCD-LGEGAIPSGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~-~~~~~~L~~L~ls~n~l~~~lP~--sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L~sL   76 (366)
                      +++|++|+|++|......+. +..+++|+.|++++|.+. .+|.  .+..+++|+.|+|++|+ +. +..|..++.+++|
T Consensus        99 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~l~~L  176 (353)
T 2z80_A           99 LGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFT-KIQRKDFAGLTFL  176 (353)
T ss_dssp             CTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCC-EECTTTTTTCCEE
T ss_pred             CCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCcccc-ccCHHHccCCCCC
Confidence            46788888888875533322 455677888888888887 5554  67778888888888884 43 3335677778888


Q ss_pred             CEEEccCCCCCcc-chhhhCCCCccEEEccCCcC
Q 040119           77 EELHLSGNNFFTL-PASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        77 ~~L~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~  109 (366)
                      +.|++++|.++.+ |..+.++++|+.|++++|++
T Consensus       177 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l  210 (353)
T 2z80_A          177 EELEIDASDLQSYEPKSLKSIQNVSHLILHMKQH  210 (353)
T ss_dssp             EEEEEEETTCCEECTTTTTTCSEEEEEEEECSCS
T ss_pred             CEEECCCCCcCccCHHHHhccccCCeecCCCCcc
Confidence            8888888877754 66777777777777777764

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.39  E-value=4.2e-13  Score=135.40  Aligned_cols=129  Identities=10%  Similarity=0.084  Sum_probs=63.4

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCC-CCCCCCEEEccCCCCCccchhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIG-NLCSLEELHLSGNNFFTLPASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~-~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~  103 (366)
                      ++|+.|++++|.+.+..|..+..+++|+.|+|++|.+. +..|..+. .+++|+.|+|++|.|+.+|. +..+++|+.|+
T Consensus       120 ~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~-~~~l~~L~~L~  197 (487)
T 3oja_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAASSDTLEHLNLQYNFIYDVKG-QVVFAKLKTLD  197 (487)
T ss_dssp             SSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCC-EEEGGGGGGGTTTCCEEECTTSCCCEEEC-CCCCTTCCEEE
T ss_pred             CCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCC-CcChHHHhhhCCcccEEecCCCccccccc-cccCCCCCEEE
Confidence            33444555555444444444444455555555555544 33344443 44455555555555544432 22344555555


Q ss_pred             ccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      |++|++.+    +|+.+.     ++++|+.|+++     .+.+.  .+|.++....   ++..+++..|.+
T Consensus       198 Ls~N~l~~----~~~~~~-----~l~~L~~L~Ls-----~N~l~--~lp~~l~~l~---~L~~L~l~~N~l  249 (487)
T 3oja_A          198 LSSNKLAF----MGPEFQ-----SAAGVTWISLR-----NNKLV--LIEKALRFSQ---NLEHFDLRGNGF  249 (487)
T ss_dssp             CCSSCCCE----ECGGGG-----GGTTCSEEECT-----TSCCC--EECTTCCCCT---TCCEEECTTCCB
T ss_pred             CCCCCCCC----CCHhHc-----CCCCccEEEec-----CCcCc--ccchhhccCC---CCCEEEcCCCCC
Confidence            55554332    222222     45566666665     33333  2676666555   677777777766

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.39  E-value=3.2e-12  Score=110.80  Aligned_cols=123  Identities=20%  Similarity=0.209  Sum_probs=93.3

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      .+.++++++......  ......|+.|++++|.+.+..+..+..+++|+.|+|++|.+. +..+..++.+++|+.|+|++
T Consensus         9 ~~~l~~~~~~l~~~p--~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~   85 (177)
T 2o6r_A            9 GTEIRCNSKGLTSVP--TGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHE   85 (177)
T ss_dssp             TTEEECCSSCCSSCC--TTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEecCCCCccCC--CCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce-EeChhHccCCCccCEEECCC
Confidence            467888888744322  123367999999999998555556789999999999999997 44445678999999999999


Q ss_pred             CCCCccchh-hhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           84 NNFFTLPAS-IYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        84 N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |.|+.+|.. +..+++|+.|++++|++.+    +|..+    +.++++|+.++++
T Consensus        86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~----~~~~~----~~~l~~L~~L~l~  132 (177)
T 2o6r_A           86 NKLQSLPNGVFDKLTQLKELALDTNQLKS----VPDGI----FDRLTSLQKIWLH  132 (177)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCCSC----CCTTT----TTTCTTCCEEECC
T ss_pred             CCccccCHHHhhCCcccCEEECcCCcceE----eCHHH----hcCCcccCEEEec
Confidence            999988764 6889999999999998553    33322    1267778888877

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.39  E-value=8.1e-13  Score=127.89  Aligned_cols=107  Identities=17%  Similarity=0.102  Sum_probs=67.6

Q ss_pred             CccEEEeeCCCCCCCCC-CcC-CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            3 NLKELSFRGCKGSPSSA-SWF-LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~-~~~-~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      .|+.|+|++|.+....+ .+. .+.+|+.|++++|.+....|..|..+++|+.|+|++|++. +..+..|..+++|+.|+
T Consensus        40 ~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~  118 (361)
T 2xot_A           40 YTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLL  118 (361)
T ss_dssp             TCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEEE
T ss_pred             CCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCC-cCCHHHhCCCcCCCEEE
Confidence            46677777776443222 233 5566777777777776544555677777777777777775 33344566777777777


Q ss_pred             ccCCCCCcc-chhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTL-PASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |++|.|+.+ |..+.++++|+.|+|++|++.
T Consensus       119 L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~  149 (361)
T 2xot_A          119 LYNNHIVVVDRNAFEDMAQLQKLYLSQNQIS  149 (361)
T ss_dssp             CCSSCCCEECTTTTTTCTTCCEEECCSSCCC
T ss_pred             CCCCcccEECHHHhCCcccCCEEECCCCcCC
Confidence            777777755 456667777777777777643

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.38  E-value=5.6e-13  Score=126.06  Aligned_cols=156  Identities=11%  Similarity=0.038  Sum_probs=103.3

Q ss_pred             CCCccEEEeeCCCCCCCCCC-----cCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCC--C--CccCC
Q 040119            1 MKNLKELSFRGCKGSPSSAS-----WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGA--I--PSGIG   71 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~-----~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~--l--P~~i~   71 (366)
                      +++|++|+|++|......+.     ...+++|+.|++++|.+.+..|..+..+++|+.|+|++|++. +.  +  +..++
T Consensus       116 ~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~~~~  194 (310)
T 4glp_A          116 GLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGL-GERGLMAALCPH  194 (310)
T ss_dssp             CBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTC-HHHHHHTTSCTT
T ss_pred             CCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCc-cchhhhHHHhhh
Confidence            46788888888875543221     123567888888888887666677788888888888888865 32  2  23346


Q ss_pred             CCCCCCEEEccCCCCCccch----hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccC
Q 040119           72 NLCSLEELHLSGNNFFTLPA----SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVP  147 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~~lP~----~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~  147 (366)
                      .+++|++|+|++|+++.+|.    .+.++++|++|+|++|++.+.+|.-...+.     .+++|+.|+++     .+.+.
T Consensus       195 ~l~~L~~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~-----~~~~L~~L~Ls-----~N~l~  264 (310)
T 4glp_A          195 KFPAIQNLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM-----WSSALNSLNLS-----FAGLE  264 (310)
T ss_dssp             SSCCCCSCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC-----CCTTCCCEECC-----SSCCC
T ss_pred             cCCCCCEEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc-----CcCcCCEEECC-----CCCCC
Confidence            77888888888888876664    246778888888888886654332221111     23577777766     33443


Q ss_pred             CCCCCcccccCCCCCceEEEECCCCCC
Q 040119          148 GSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       148 g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                        .||.++.  .   ++..++|+.|.+
T Consensus       265 --~lp~~~~--~---~L~~L~Ls~N~l  284 (310)
T 4glp_A          265 --QVPKGLP--A---KLRVLDLSSNRL  284 (310)
T ss_dssp             --SCCSCCC--S---CCSCEECCSCCC
T ss_pred             --chhhhhc--C---CCCEEECCCCcC
Confidence              4666653  3   567788888877

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.38  E-value=6.2e-12  Score=130.87  Aligned_cols=109  Identities=21%  Similarity=0.189  Sum_probs=54.6

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|......+ .+..+.+|++|++++|.+.+..|..+.++++|++|+|++|.+. +..|..++.+++|++|+
T Consensus        73 ~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~  151 (680)
T 1ziw_A           73 PMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLS-STKLGTQVQLENLQELL  151 (680)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCS-CCCCCSSSCCTTCCEEE
T ss_pred             cCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCccc-ccCchhhcccccCCEEE
Confidence            445555555554322211 2344455555555555555333344555555555555555554 44455555555555555


Q ss_pred             ccCCCCCccch-hh--hCCCCccEEEccCCcCcc
Q 040119           81 LSGNNFFTLPA-SI--YRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        81 Ls~N~~~~lP~-~i--~~L~~L~~L~L~~n~~l~  111 (366)
                      |++|.++.++. .+  ..+++|+.|++++|++.+
T Consensus       152 L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~  185 (680)
T 1ziw_A          152 LSNNKIQALKSEELDIFANSSLKKLELSSNQIKE  185 (680)
T ss_dssp             CCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCC
T ss_pred             ccCCcccccCHHHhhccccccccEEECCCCcccc
Confidence            55555554432 22  234555555555555443

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.38  E-value=2.3e-12  Score=138.18  Aligned_cols=111  Identities=21%  Similarity=0.300  Sum_probs=84.5

Q ss_pred             CCCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc--CCCCCCC
Q 040119            1 MKNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG--IGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~--i~~L~sL   76 (366)
                      |++|++|+|++|...  .+...+..+.+|+.|++++|.+.+..|..|.++++|+.|+|++|.+. +.+|..  ++.+++|
T Consensus        47 l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~~~L~~L  125 (844)
T 3j0a_A           47 LEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLS-DAVLKDGYFRNLKAL  125 (844)
T ss_dssp             CCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCEECTTCCCS-SCCSTTCCCSSCSSC
T ss_pred             cccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEeeCcCCCCC-cccccCccccccCCC
Confidence            456777777777422  22334556677888888888888777888888888888888888887 656655  8888889


Q ss_pred             CEEEccCCCCCcc--chhhhCCCCccEEEccCCcCccC
Q 040119           77 EELHLSGNNFFTL--PASIYRLSKLSKIFLKDCKMLQN  112 (366)
Q Consensus        77 ~~L~Ls~N~~~~l--P~~i~~L~~L~~L~L~~n~~l~~  112 (366)
                      ++|+|++|.++.+  +..++++++|+.|+|++|.+.+.
T Consensus       126 ~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A          126 TRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             CEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            9999998888855  35788888899888888876543

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.38  E-value=7e-13  Score=134.66  Aligned_cols=163  Identities=19%  Similarity=0.128  Sum_probs=75.1

Q ss_pred             CCCccEEEeeCCCCCCCC---CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSS---ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~---~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL   76 (366)
                      +++|+.|+|++|......   .....+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+. +..| ..+..+++|
T Consensus       346 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~-~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~~l~~L  423 (570)
T 2z63_A          346 LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLK-QMSEFSVFLSLRNL  423 (570)
T ss_dssp             CTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEE-SCTTSCTTTTCTTC
T ss_pred             CCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc-cccccccccCCCCEEEccCCccc-cccchhhhhcCCCC
Confidence            355666666666533211   11223344555555555554 23333445555555555555544 2222 234455555


Q ss_pred             CEEEccCCCCCc-cchhhhCCCCccEEEccCCcCc-cCCCCC---Ccccceeccc-------------CCcCccEeeCCC
Q 040119           77 EELHLSGNNFFT-LPASIYRLSKLSKIFLKDCKML-QNLPRL---PASIHGIFLD-------------GCVSLETLSDGY  138 (366)
Q Consensus        77 ~~L~Ls~N~~~~-lP~~i~~L~~L~~L~L~~n~~l-~~lp~l---p~~L~~L~~~-------------~c~sL~~l~~~~  138 (366)
                      +.|+|++|.+.. .|..+.++++|+.|++++|++. +.+|..   .++|+.|+++             ++++|+.|+++ 
T Consensus       424 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~-  502 (570)
T 2z63_A          424 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMA-  502 (570)
T ss_dssp             CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECC-
T ss_pred             CEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCC-
Confidence            555555555442 3344445555555555555433 222211   1122222222             34555555554 


Q ss_pred             CCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          139 WRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       139 f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                          .+.+.+ ..|..|....   ++..+++..|.+
T Consensus       503 ----~n~l~~-~~~~~~~~l~---~L~~L~l~~N~~  530 (570)
T 2z63_A          503 ----SNQLKS-VPDGIFDRLT---SLQKIWLHTNPW  530 (570)
T ss_dssp             ----SSCCSC-CCTTTTTTCT---TCCEEECCSSCB
T ss_pred             ----CCcCCC-CCHHHhhccc---CCcEEEecCCcc
Confidence                223332 2344555544   667777777776

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.38  E-value=3.7e-12  Score=130.08  Aligned_cols=162  Identities=19%  Similarity=0.130  Sum_probs=118.7

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCC-CCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGE-GAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~-~~lP~~i~~L~sL~~L~   80 (366)
                      .+|+.|++++|.... ......+++|+.|++++|.+.+.+|..+..+++|+.|+|++|++.. ..+|..++.+++|+.|+
T Consensus       331 ~~L~~L~l~~n~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~  409 (562)
T 3a79_B          331 MNIKMLSISDTPFIH-MVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLD  409 (562)
T ss_dssp             CCCSEEEEESSCCCC-CCCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEE
T ss_pred             CcceEEEccCCCccc-ccCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEE
Confidence            358888998887432 2222456789999999999998889999999999999999999962 02346789999999999


Q ss_pred             ccCCCCCc-cchh-hhCCCCccEEEccCCcCccCCCC-CCcccceecccCC------------cCccEeeCCCCCCcccc
Q 040119           81 LSGNNFFT-LPAS-IYRLSKLSKIFLKDCKMLQNLPR-LPASIHGIFLDGC------------VSLETLSDGYWRDCSIV  145 (366)
Q Consensus        81 Ls~N~~~~-lP~~-i~~L~~L~~L~L~~n~~l~~lp~-lp~~L~~L~~~~c------------~sL~~l~~~~f~~~~~~  145 (366)
                      |++|.++. +|.. +..+++|+.|++++|++.+.+|. +|+.|+.|+++++            ++|+.|+++     .+.
T Consensus       410 l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~~L~~L~L~~N~l~~ip~~~~~l~~L~~L~L~-----~N~  484 (562)
T 3a79_B          410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVLDLHNNRIMSIPKDVTHLQALQELNVA-----SNQ  484 (562)
T ss_dssp             CTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCCTTCSEEECCSSCCCCCCTTTTSSCCCSEEECC-----SSC
T ss_pred             CCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhcCcCCEEECCCCcCcccChhhcCCCCCCEEECC-----CCC
Confidence            99999996 8864 77889999999999998766654 3467777776655            233333333     233


Q ss_pred             cCCCCCCcc-cccCCCCCceEEEECCCCCC
Q 040119          146 VPGSEIPEW-FEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       146 l~g~~iP~~-f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +.  .+|.. |....   ++..+++..|.+
T Consensus       485 l~--~l~~~~~~~l~---~L~~L~l~~N~~  509 (562)
T 3a79_B          485 LK--SVPDGVFDRLT---SLQYIWLHDNPW  509 (562)
T ss_dssp             CC--CCCTTSTTTCT---TCCCEECCSCCB
T ss_pred             CC--CCCHHHHhcCC---CCCEEEecCCCc
Confidence            32  46665 55444   677778887776

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=99.37  E-value=2.8e-12  Score=133.53  Aligned_cols=126  Identities=14%  Similarity=0.108  Sum_probs=97.3

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L   79 (366)
                      ++|++|+|++|......+ .+..++.|+.|++++|.+.+..|..+.++++|+.|+|++|.+..  +|. .|+.+++|++|
T Consensus        25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~--l~~~~~~~l~~L~~L  102 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQ--LSDKTFAFCTNLTEL  102 (680)
T ss_dssp             TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCC--CCTTTTTTCTTCSEE
T ss_pred             CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCc--cChhhhccCCCCCEE
Confidence            478899999998554333 35667789999999999987778888899999999999999863  665 68999999999


Q ss_pred             EccCCCCCccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           80 HLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        80 ~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++|.++.+| ..++++++|++|++++|++.+..|.   .+.     ++++|+.|+++
T Consensus       103 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~---~~~-----~l~~L~~L~L~  153 (680)
T 1ziw_A          103 HLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLG---TQV-----QLENLQELLLS  153 (680)
T ss_dssp             ECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCC---SSS-----CCTTCCEEECC
T ss_pred             ECCCCccCccChhHccccCCCCEEECCCCcccccCch---hhc-----ccccCCEEEcc
Confidence            99999998776 5788999999999999987654332   222     45555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.37  E-value=1e-11  Score=124.27  Aligned_cols=101  Identities=16%  Similarity=0.117  Sum_probs=74.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|++|+|++|.+... +....+++|+.|++++|.+.+ +|  +..+++|+.|+|++|.+..  +|  ++.+++|++|+
T Consensus        41 l~~L~~L~Ls~n~l~~~-~~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~--~~--~~~l~~L~~L~  112 (457)
T 3bz5_A           41 LATLTSLDCHNSSITDM-TGIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTN--LD--VTPLTKLTYLN  112 (457)
T ss_dssp             HTTCCEEECCSSCCCCC-TTGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC--CC--CTTCTTCCEEE
T ss_pred             cCCCCEEEccCCCcccC-hhhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCce--ee--cCCCCcCCEEE
Confidence            36788888888875543 345566778888888888874 44  7778888888888888863  44  77788888888


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCcc
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |++|.++.+|  ++.+++|+.|++++|++.+
T Consensus       113 L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~  141 (457)
T 3bz5_A          113 CDTNKLTKLD--VSQNPLLTYLNCARNTLTE  141 (457)
T ss_dssp             CCSSCCSCCC--CTTCTTCCEEECTTSCCSC
T ss_pred             CCCCcCCeec--CCCCCcCCEEECCCCccce
Confidence            8888888776  7777888888888877554

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.37  E-value=6.5e-12  Score=118.95  Aligned_cols=146  Identities=16%  Similarity=0.272  Sum_probs=118.7

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|......+ ...+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+..  +|. +..+++|+.|+
T Consensus        62 l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~l~~n~l~~--~~~-l~~l~~L~~L~  135 (308)
T 1h6u_A           62 LNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLK-NVS-AIAGLQSIKTLDLTSTQITD--VTP-LAGLSNLQVLY  135 (308)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCS-CCG-GGTTCTTCCEEECTTSCCCC--CGG-GTTCTTCCEEE
T ss_pred             cCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCC-Cch-hhcCCCCCCEEECCCCCCCC--chh-hcCCCCCCEEE
Confidence            5789999999998655444 677788999999999997 565 59999999999999999973  654 89999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      |++|.++.+|. +..+++|+.|++++|++..    +++ +     .++++|+.|+++     .+.+.  .+|. +.... 
T Consensus       136 l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~----~~~-l-----~~l~~L~~L~l~-----~n~l~--~~~~-l~~l~-  195 (308)
T 1h6u_A          136 LDLNQITNISP-LAGLTNLQYLSIGNAQVSD----LTP-L-----ANLSKLTTLKAD-----DNKIS--DISP-LASLP-  195 (308)
T ss_dssp             CCSSCCCCCGG-GGGCTTCCEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCC--CCGG-GGGCT-
T ss_pred             CCCCccCcCcc-ccCCCCccEEEccCCcCCC----Chh-h-----cCCCCCCEEECC-----CCccC--cChh-hcCCC-
Confidence            99999998886 8999999999999998543    333 3     378899999887     34443  3554 54444 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..++|..|.+
T Consensus       196 --~L~~L~L~~N~l  207 (308)
T 1h6u_A          196 --NLIEVHLKNNQI  207 (308)
T ss_dssp             --TCCEEECTTSCC
T ss_pred             --CCCEEEccCCcc
Confidence              788999999988

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.37  E-value=3.5e-12  Score=119.90  Aligned_cols=102  Identities=13%  Similarity=0.208  Sum_probs=74.0

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|++++|..... +....+++|+.|++++|.+. .++. +..+++|+.|+|++|.+..  +| .++.+++|+.|+|
T Consensus        46 ~~L~~L~l~~~~i~~~-~~~~~l~~L~~L~L~~n~l~-~~~~-l~~l~~L~~L~l~~n~l~~--~~-~l~~l~~L~~L~L  119 (291)
T 1h6t_A           46 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL  119 (291)
T ss_dssp             HTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred             CcccEEEccCCCcccC-hhHhcCCCCCEEEccCCccC-CCcc-cccCCCCCEEECCCCcCCC--Ch-hhccCCCCCEEEC
Confidence            5678888888774433 33455677888888888886 4555 7788888888888888763  44 3777888888888


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      ++|.++.++ .+..+++|+.|++++|++.
T Consensus       120 ~~n~i~~~~-~l~~l~~L~~L~l~~n~l~  147 (291)
T 1h6t_A          120 EHNGISDIN-GLVHLPQLESLYLGNNKIT  147 (291)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCC
T ss_pred             CCCcCCCCh-hhcCCCCCCEEEccCCcCC
Confidence            888887764 5777888888888888754

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.36  E-value=5.2e-12  Score=117.07  Aligned_cols=145  Identities=14%  Similarity=0.130  Sum_probs=112.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|+.|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|++..  +|....  ++|+.|+
T Consensus        40 l~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~L~~N~i~-~~~~-l~~l~~L~~L~L~~N~l~~--l~~~~~--~~L~~L~  112 (263)
T 1xeu_A           40 LSGVQNFNGDNSNIQSL-AGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRLKN--LNGIPS--ACLSRLF  112 (263)
T ss_dssp             HTTCSEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCSSCCEEECCSSCCSC--CTTCCC--SSCCEEE
T ss_pred             cCcCcEEECcCCCcccc-hHHhhCCCCCEEECCCCccC-CChh-hccCCCCCEEECCCCccCC--cCcccc--CcccEEE
Confidence            47899999999985533 35566788999999999998 5666 9999999999999999974  765444  8999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      |++|.++.+| .+..+++|+.|+|++|++.+ +   | .+     .++++|+.|+++     .+.+.+  + ..+.... 
T Consensus       113 L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~~-~---~-~l-----~~l~~L~~L~L~-----~N~i~~--~-~~l~~l~-  172 (263)
T 1xeu_A          113 LDNNELRDTD-SLIHLKNLEILSIRNNKLKS-I---V-ML-----GFLSKLEVLDLH-----GNEITN--T-GGLTRLK-  172 (263)
T ss_dssp             CCSSCCSBSG-GGTTCTTCCEEECTTSCCCB-C---G-GG-----GGCTTCCEEECT-----TSCCCB--C-TTSTTCC-
T ss_pred             ccCCccCCCh-hhcCcccccEEECCCCcCCC-C---h-HH-----ccCCCCCEEECC-----CCcCcc--h-HHhccCC-
Confidence            9999999987 59999999999999999553 2   2 23     377888888887     334433  2 3444444 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..+++..|.+
T Consensus       173 --~L~~L~l~~N~~  184 (263)
T 1xeu_A          173 --KVNWIDLTGQKC  184 (263)
T ss_dssp             --CCCEEEEEEEEE
T ss_pred             --CCCEEeCCCCcc
Confidence              677888888776

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.36  E-value=3.3e-12  Score=127.49  Aligned_cols=108  Identities=16%  Similarity=0.183  Sum_probs=87.5

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L   79 (366)
                      ++|+.|+|++|.+... ...+..+++|+.|++++|.+.+..|..|.++++|+.|+|++|.+..  +| ..|..+++|+.|
T Consensus        32 ~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L  109 (477)
T 2id5_A           32 TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKL--IPLGVFTGLSNLTKL  109 (477)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCS--CCTTSSTTCTTCCEE
T ss_pred             CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCc--cCcccccCCCCCCEE
Confidence            4688999999885543 3455667889999999999887778888999999999999999863  55 457889999999


Q ss_pred             EccCCCCCcc-chhhhCCCCccEEEccCCcCcc
Q 040119           80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~  111 (366)
                      +|++|.+..+ |..+.++++|+.|+|++|++.+
T Consensus       110 ~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~  142 (477)
T 2id5_A          110 DISENKIVILLDYMFQDLYNLKSLEVGDNDLVY  142 (477)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEEECCTTCCE
T ss_pred             ECCCCccccCChhHccccccCCEEECCCCccce
Confidence            9999999855 5678889999999999988654

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.36  E-value=4.9e-13  Score=141.36  Aligned_cols=110  Identities=23%  Similarity=0.229  Sum_probs=91.1

Q ss_pred             CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhC
Q 040119           16 PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYR   95 (366)
Q Consensus        16 ~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~   95 (366)
                      .+...+..+..|+.|+|++|.+. .+|..+..+++|+.|+|++|.|+.  +|..|+.|++|+.|+|++|.|+.+|..|++
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~  291 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLTE--LPAEIKNLSNLRVLDLSHNRLTSLPAELGS  291 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCSC--CCGGGGGGTTCCEEECTTSCCSSCCSSGGG
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCcc--cChhhhCCCCCCEEeCcCCcCCccChhhcC
Confidence            34444556678999999999998 899889999999999999999964  999999999999999999999999999999


Q ss_pred             CCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           96 LSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        96 L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|++|+|++|.+.    .+|..+.     ++++|+.|+++
T Consensus       292 l~~L~~L~L~~N~l~----~lp~~~~-----~l~~L~~L~L~  324 (727)
T 4b8c_D          292 CFQLKYFYFFDNMVT----TLPWEFG-----NLCNLQFLGVE  324 (727)
T ss_dssp             GTTCSEEECCSSCCC----CCCSSTT-----SCTTCCCEECT
T ss_pred             CCCCCEEECCCCCCC----ccChhhh-----cCCCccEEeCC
Confidence            999999999999853    4444454     66777777776

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.36  E-value=5.6e-12  Score=111.22  Aligned_cols=110  Identities=15%  Similarity=0.132  Sum_probs=96.7

Q ss_pred             CCccEEEeeCCCCCCCCC--CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSSA--SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~--~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|+.|+|++|.+....+  .+..+++|+.|++++|.+.+..|..|..+++|+.|+|++|++. +..|..|..+++|+.|
T Consensus        29 ~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L  107 (192)
T 1w8a_A           29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred             CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCC-ccCHHHhcCCCCCCEE
Confidence            378999999999655444  3567788999999999999888999999999999999999998 6667779999999999


Q ss_pred             EccCCCCCcc-chhhhCCCCccEEEccCCcCccC
Q 040119           80 HLSGNNFFTL-PASIYRLSKLSKIFLKDCKMLQN  112 (366)
Q Consensus        80 ~Ls~N~~~~l-P~~i~~L~~L~~L~L~~n~~l~~  112 (366)
                      +|++|+|+.+ |..+..+++|+.|+|++|++...
T Consensus       108 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~  141 (192)
T 1w8a_A          108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCN  141 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCS
T ss_pred             ECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCc
Confidence            9999999955 77899999999999999997754

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.36  E-value=8.4e-12  Score=117.31  Aligned_cols=146  Identities=18%  Similarity=0.244  Sum_probs=115.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|......+ ...+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+..  + ..+..+++|+.|+
T Consensus        67 l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~-~~~~-l~~l~~L~~L~L~~n~i~~--~-~~l~~l~~L~~L~  140 (291)
T 1h6t_A           67 LPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY  140 (291)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEE
T ss_pred             CCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCC-CChh-hccCCCCCEEECCCCcCCC--C-hhhcCCCCCCEEE
Confidence            5789999999998665444 667788999999999997 4555 8999999999999999973  4 5788999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      |++|.++.+ ..+..+++|+.|++++|++.+    +++ +     .++++|+.|+++     .+.+.  .+|. +.... 
T Consensus       141 l~~n~l~~~-~~l~~l~~L~~L~L~~N~l~~----~~~-l-----~~l~~L~~L~L~-----~N~i~--~l~~-l~~l~-  200 (291)
T 1h6t_A          141 LGNNKITDI-TVLSRLTKLDTLSLEDNQISD----IVP-L-----AGLTKLQNLYLS-----KNHIS--DLRA-LAGLK-  200 (291)
T ss_dssp             CCSSCCCCC-GGGGGCTTCSEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCC--BCGG-GTTCT-
T ss_pred             ccCCcCCcc-hhhccCCCCCEEEccCCcccc----chh-h-----cCCCccCEEECC-----CCcCC--CChh-hccCC-
Confidence            999999988 479999999999999998553    322 3     378889999887     34333  3554 55444 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..+++..|.+
T Consensus       201 --~L~~L~l~~n~i  212 (291)
T 1h6t_A          201 --NLDVLELFSQEC  212 (291)
T ss_dssp             --TCSEEEEEEEEE
T ss_pred             --CCCEEECcCCcc
Confidence              778888887766

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=99.35  E-value=4e-12  Score=136.24  Aligned_cols=110  Identities=16%  Similarity=0.137  Sum_probs=94.2

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCC-CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSL-PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~l-P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|++|+|++|.+.. ....+..+.+|++|++++|...+.+ |..|.++++|++|+|++|.+. +..|..|+.+++|++|
T Consensus        24 ~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           24 NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIY-FLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             TTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCC-EECTTSSCSCSSCCCE
T ss_pred             CCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCc-ccCHhHccCCcccCEe
Confidence            689999999998554 3445677788999999999666566 788999999999999999998 6679999999999999


Q ss_pred             EccCCCCCc-cchh--hhCCCCccEEEccCCcCccC
Q 040119           80 HLSGNNFFT-LPAS--IYRLSKLSKIFLKDCKMLQN  112 (366)
Q Consensus        80 ~Ls~N~~~~-lP~~--i~~L~~L~~L~L~~n~~l~~  112 (366)
                      +|++|.++. +|..  +.++++|+.|+|++|++.+.
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~  138 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSL  138 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCC
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCccccc
Confidence            999999984 5654  89999999999999997653

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.35  E-value=1e-12  Score=124.75  Aligned_cols=155  Identities=10%  Similarity=0.037  Sum_probs=71.4

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|++|+|++|.+....    ..+.|+.|++++|.+.+ ++.  ..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus        79 l~~L~~L~Ls~n~l~~l~----~~~~L~~L~l~~n~l~~-~~~--~~~~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~  150 (317)
T 3o53_A           79 LSTLRTLDLNNNYVQELL----VGPSIETLHAANNNISR-VSC--SRGQGKKNIYLANNKIT-MLRDLDEGCRSRVQYLD  150 (317)
T ss_dssp             CTTCCEEECCSSEEEEEE----ECTTCCEEECCSSCCSE-EEE--CCCSSCEEEECCSSCCC-SGGGBCTGGGSSEEEEE
T ss_pred             cCCCCEEECcCCcccccc----CCCCcCEEECCCCccCC-cCc--cccCCCCEEECCCCCCC-CccchhhhccCCCCEEE
Confidence            356666666666532110    11344555555555442 221  12344455555555544 22233444444555555


Q ss_pred             ccCCCCCcc-chhh-hCCCCccEEEccCCcCccCCCCC--Ccccceeccc------------CCcCccEeeCCCCCCccc
Q 040119           81 LSGNNFFTL-PASI-YRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFLD------------GCVSLETLSDGYWRDCSI  144 (366)
Q Consensus        81 Ls~N~~~~l-P~~i-~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~~------------~c~sL~~l~~~~f~~~~~  144 (366)
                      |++|.++.+ |..+ ..+++|+.|+|++|++.. +|..  .++|+.|+++            ++++|+.|+++     .+
T Consensus       151 Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~-~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~-----~N  224 (317)
T 3o53_A          151 LKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VKGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLR-----NN  224 (317)
T ss_dssp             CTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE-EECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECT-----TS
T ss_pred             CCCCCCCcccHHHHhhccCcCCEEECCCCcCcc-cccccccccCCEEECCCCcCCcchhhhcccCcccEEECc-----CC
Confidence            555544433 2222 234445555554444322 1111  1222222222            44566666655     33


Q ss_pred             ccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          145 VVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       145 ~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      .+.  .+|.++....   ++..+++..|.+
T Consensus       225 ~l~--~l~~~~~~l~---~L~~L~l~~N~~  249 (317)
T 3o53_A          225 KLV--LIEKALRFSQ---NLEHFDLRGNGF  249 (317)
T ss_dssp             CCC--EECTTCCCCT---TCCEEECTTCCC
T ss_pred             ccc--chhhHhhcCC---CCCEEEccCCCc
Confidence            332  3666665554   677778777776

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.34  E-value=5.8e-12  Score=126.04  Aligned_cols=153  Identities=18%  Similarity=0.069  Sum_probs=100.4

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|..... + ...++.|+.|++++|.+.+ ++  +..+++|+.|+|++|++. + +|  ++.+++|+.|+
T Consensus       169 l~~L~~L~ls~n~l~~l-~-l~~l~~L~~L~l~~N~l~~-~~--l~~l~~L~~L~Ls~N~l~-~-ip--~~~l~~L~~L~  239 (457)
T 3bz5_A          169 QTQLTTLDCSFNKITEL-D-VSQNKLLNRLNCDTNNITK-LD--LNQNIQLTFLDCSSNKLT-E-ID--VTPLTQLTYFD  239 (457)
T ss_dssp             CTTCCEEECCSSCCCCC-C-CTTCTTCCEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCS-C-CC--CTTCTTCSEEE
T ss_pred             CCcCCEEECCCCcccee-c-cccCCCCCEEECcCCcCCe-ec--cccCCCCCEEECcCCccc-c-cC--ccccCCCCEEE
Confidence            46788888888875542 2 4556678888888888874 32  777888888888888886 3 66  77788888888


Q ss_pred             ccCCCCCccch-hhh-----------------------------CCCCccEEEccCCcCccCCCCCCcccceecccCCcC
Q 040119           81 LSGNNFFTLPA-SIY-----------------------------RLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVS  130 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~-----------------------------~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~s  130 (366)
                      +++|.++.+|. .+.                             .+++|+.|++++|+.++.+|.-...++.|++++|++
T Consensus       240 l~~N~l~~~~~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~  319 (457)
T 3bz5_A          240 CSVNPLTELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPK  319 (457)
T ss_dssp             CCSSCCSCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTT
T ss_pred             eeCCcCCCcCHHHCCCCCEEeccCCCCCEEECCCCccCCcccccccccCCEEECCCCcccceeccCCCcceEechhhccc
Confidence            88888776552 222                             234445555555555554444444556666666666


Q ss_pred             ccEeeCCCCCCcccccCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          131 LETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       131 L~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      |+.++++     .+.+.|  +|  +....   .+..+++..|.+
T Consensus       320 L~~L~L~-----~N~l~~--l~--l~~l~---~L~~L~l~~N~l  351 (457)
T 3bz5_A          320 LVYLYLN-----NTELTE--LD--VSHNT---KLKSLSCVNAHI  351 (457)
T ss_dssp             CCEEECT-----TCCCSC--CC--CTTCT---TCSEEECCSSCC
T ss_pred             CCEEECC-----CCcccc--cc--cccCC---cCcEEECCCCCC
Confidence            6666665     444444  33  44444   678888888887

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.34  E-value=4e-12  Score=123.02  Aligned_cols=109  Identities=19%  Similarity=0.158  Sum_probs=93.9

Q ss_pred             CCCccEEEeeCCCCCCCC-CCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            1 MKNLKELSFRGCKGSPSS-ASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~-~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      |++|+.|+|++|.+.... ..+..+++|+.|++++|.+....+..|..+++|+.|+|++|.+. +..|..|..+++|+.|
T Consensus        63 l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~~~l~~L~~L  141 (361)
T 2xot_A           63 LTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKL  141 (361)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCC-EECTTTTTTCTTCCEE
T ss_pred             ccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCcCCCEEECCCCccc-EECHHHhCCcccCCEE
Confidence            578999999999965433 34667788999999999998666667899999999999999998 5668899999999999


Q ss_pred             EccCCCCCccchhh----hCCCCccEEEccCCcCc
Q 040119           80 HLSGNNFFTLPASI----YRLSKLSKIFLKDCKML  110 (366)
Q Consensus        80 ~Ls~N~~~~lP~~i----~~L~~L~~L~L~~n~~l  110 (366)
                      +|++|.|+.+|..+    ..+++|+.|+|++|++.
T Consensus       142 ~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~  176 (361)
T 2xot_A          142 YLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK  176 (361)
T ss_dssp             ECCSSCCCSCCGGGTC----CTTCCEEECCSSCCC
T ss_pred             ECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCC
Confidence            99999999999765    57999999999999855

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.34  E-value=8e-12  Score=108.22  Aligned_cols=105  Identities=18%  Similarity=0.228  Sum_probs=81.1

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      .+.|++++|.+.... . .....|+.|++++|.+.+..|..|..+++|+.|+|++|+|. +..|..|..+++|+.|+|++
T Consensus        11 ~~~l~~s~n~l~~ip-~-~~~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLASVP-T-GIPTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLT-VLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCSSCC-S-CCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcCccC-c-cCCCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcC-ccChhhccCCCCCCEEECCC
Confidence            467888888744322 1 12366888999999988666778888999999999999987 44444568889999999999


Q ss_pred             CCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119           84 NNFFTLPA-SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        84 N~~~~lP~-~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |+|+.+|. .+.++++|+.|+|++|++..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c  116 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDC  116 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence            99988876 47888899999999988553

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.34  E-value=2.4e-11  Score=126.17  Aligned_cols=34  Identities=21%  Similarity=0.282  Sum_probs=17.3

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCC
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMA   38 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~   38 (366)
                      ++|++|+|++|++... +.  .+++|+.|++++|.+.
T Consensus        81 ~~L~~L~Ls~N~l~~l-p~--~l~~L~~L~Ls~N~l~  114 (622)
T 3g06_A           81 PELRTLEVSGNQLTSL-PV--LPPGLLELSIFSNPLT  114 (622)
T ss_dssp             TTCCEEEECSCCCSCC-CC--CCTTCCEEEECSCCCC
T ss_pred             CCCCEEEcCCCcCCcC-CC--CCCCCCEEECcCCcCC
Confidence            4566666666653321 11  3344555555555554

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.33  E-value=3.3e-11  Score=120.43  Aligned_cols=114  Identities=25%  Similarity=0.334  Sum_probs=86.6

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|++|++++|......   ....+|+.|++++|.+. .+| .+.++++|+.|+|++|++..  +|..+   .+|++|+++
T Consensus       112 ~L~~L~l~~n~l~~l~---~~~~~L~~L~L~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~--lp~~~---~~L~~L~L~  181 (454)
T 1jl5_A          112 SLKSLLVDNNNLKALS---DLPPLLEYLGVSNNQLE-KLP-ELQNSSFLKIIDVDNNSLKK--LPDLP---PSLEFIAAG  181 (454)
T ss_dssp             TCCEEECCSSCCSCCC---SCCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSC--CCCCC---TTCCEEECC
T ss_pred             CCcEEECCCCccCccc---CCCCCCCEEECcCCCCC-CCc-ccCCCCCCCEEECCCCcCcc--cCCCc---ccccEEECc
Confidence            4555555555433211   11256888888888887 478 48899999999999998863  77654   488999999


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC  128 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c  128 (366)
                      +|.++.+| .+.++++|+.|++++|++.+ +|..|.+++.|+++++
T Consensus       182 ~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~~~L~~L~l~~n  225 (454)
T 1jl5_A          182 NNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLPLSLESIVAGNN  225 (454)
T ss_dssp             SSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCCTTCCEEECCSS
T ss_pred             CCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCcCcccEEECcCC
Confidence            99999888 68999999999999998664 8888888888887665

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.33  E-value=3e-11  Score=124.28  Aligned_cols=147  Identities=20%  Similarity=0.241  Sum_probs=114.1

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|++|.+. ..+  ..+++|+.|++++|.+.+ +|. +..  +|+.|+|++|+++ + +|.   .+++|+.|+|
T Consensus        80 ~~L~~L~Ls~N~l~-~ip--~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~-~-lp~---~l~~L~~L~L  147 (571)
T 3cvr_A           80 PQITVLEITQNALI-SLP--ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLT-M-LPE---LPALLEYINA  147 (571)
T ss_dssp             TTCSEEECCSSCCS-CCC--CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCS-C-CCC---CCTTCCEEEC
T ss_pred             CCCCEEECcCCCCc-ccc--cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCC-C-CCC---cCccccEEeC
Confidence            57999999999866 333  456889999999999985 888 665  9999999999997 3 887   6899999999


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCc---------Cc-------cEeeCCCCCCcccc
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCV---------SL-------ETLSDGYWRDCSIV  145 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~---------sL-------~~l~~~~f~~~~~~  145 (366)
                      ++|.|+.+|.   .+++|+.|+|++|++.+ +|.++.+|+.|+++++.         +|       +.|+++     .+.
T Consensus       148 s~N~l~~lp~---~l~~L~~L~Ls~N~L~~-lp~l~~~L~~L~Ls~N~L~~lp~~~~~L~~~~~~L~~L~Ls-----~N~  218 (571)
T 3cvr_A          148 DNNQLTMLPE---LPTSLEVLSVRNNQLTF-LPELPESLEALDVSTNLLESLPAVPVRNHHSEETEIFFRCR-----ENR  218 (571)
T ss_dssp             CSSCCSCCCC---CCTTCCEEECCSSCCSC-CCCCCTTCCEEECCSSCCSSCCCCC--------CCEEEECC-----SSC
T ss_pred             CCCccCcCCC---cCCCcCEEECCCCCCCC-cchhhCCCCEEECcCCCCCchhhHHHhhhcccccceEEecC-----CCc
Confidence            9999999997   67899999999999665 77777778888876652         22       333333     222


Q ss_pred             cCCCCCCcccccCCCCCceEEEECCCCCC
Q 040119          146 VPGSEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       146 l~g~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +.  .||.++....   ++..++|..|.+
T Consensus       219 l~--~lp~~l~~l~---~L~~L~L~~N~l  242 (571)
T 3cvr_A          219 IT--HIPENILSLD---PTCTIILEDNPL  242 (571)
T ss_dssp             CC--CCCGGGGGSC---TTEEEECCSSSC
T ss_pred             ce--ecCHHHhcCC---CCCEEEeeCCcC
Confidence            22  5777776655   677788887777

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.33  E-value=1.6e-11  Score=108.64  Aligned_cols=124  Identities=21%  Similarity=0.273  Sum_probs=72.0

Q ss_pred             cEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEccC
Q 040119           28 NLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKD  106 (366)
Q Consensus        28 ~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~  106 (366)
                      +.+++++|.+. .+|..+.  ++|+.|+|++|.+..  +|..|..+++|+.|+|++|.|+.++ ..+.++++|+.|+|++
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~~--ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~   87 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFTL--VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSY   87 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCS--CCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCch--hHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCC
Confidence            45666666665 5665442  467777777777743  6666777777777777777777654 3566677777777777


Q ss_pred             CcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCc-ccccCCCCCceEEEECCCCCC
Q 040119          107 CKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPE-WFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       107 n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~-~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      |++....|   ..+.     ++++|+.|+++     .+.+.  .+|. .|....   ++..++|..|.+
T Consensus        88 N~l~~i~~---~~f~-----~l~~L~~L~L~-----~N~l~--~~~~~~~~~l~---~L~~L~L~~N~~  138 (193)
T 2wfh_A           88 NRLRCIPP---RTFD-----GLKSLRLLSLH-----GNDIS--VVPEGAFNDLS---ALSHLAIGANPL  138 (193)
T ss_dssp             SCCCBCCT---TTTT-----TCTTCCEEECC-----SSCCC--BCCTTTTTTCT---TCCEEECCSSCE
T ss_pred             CccCEeCH---HHhC-----CCCCCCEEECC-----CCCCC--eeChhhhhcCc---cccEEEeCCCCe
Confidence            76443211   1222     55566666655     33332  2333 344444   556666666654

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=99.32  E-value=1e-11  Score=126.77  Aligned_cols=102  Identities=15%  Similarity=0.035  Sum_probs=70.1

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      .++|++++|.... .|.. ..++|+.|++++|.+.+..|..+.++++|+.|+|++|.+. +..|..|+.+++|++|+|++
T Consensus        33 ~~~l~ls~~~L~~-ip~~-~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~  109 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VPKD-LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSH  109 (562)
T ss_dssp             CCEEECTTSCCCS-CCTT-SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-EECTTTTTTCTTCCEEECTT
T ss_pred             CcEEEcCCCCCcc-CCCC-CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-cCCHHHhCCCCCCCEEECCC
Confidence            3567777776443 2211 1256777777777777555567777777777777777776 45567777777777777777


Q ss_pred             CCCCccchhhhCCCCccEEEccCCcCc
Q 040119           84 NNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        84 N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |.++.+|..  .+++|++|+|++|++.
T Consensus       110 N~l~~lp~~--~l~~L~~L~Ls~N~l~  134 (562)
T 3a79_B          110 NRLQNISCC--PMASLRHLDLSFNDFD  134 (562)
T ss_dssp             SCCCEECSC--CCTTCSEEECCSSCCS
T ss_pred             CcCCccCcc--ccccCCEEECCCCCcc
Confidence            777777765  6777777777777754

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.32  E-value=1.3e-11  Score=107.39  Aligned_cols=102  Identities=18%  Similarity=0.270  Sum_probs=70.7

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEEEccC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEELHLSG   83 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L~Ls~   83 (366)
                      +.+++++|.+... +.. ....|+.|++++|.+.+..|..|.++++|+.|+|++|+|..  +|. .|..+++|+.|+|++
T Consensus        15 ~~l~~~~n~l~~i-P~~-~~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~--i~~~~~~~l~~L~~L~L~~   90 (174)
T 2r9u_A           15 TLVNCQNIRLASV-PAG-IPTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTA--IPTGVFDKLTQLTQLDLND   90 (174)
T ss_dssp             SEEECCSSCCSSC-CSC-CCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC--CCTTTTTTCTTCCEEECCS
T ss_pred             cEEEeCCCCCCcc-CCC-cCCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCc--cChhHhCCcchhhEEECCC
Confidence            5677777764322 111 12567788888888776666777778888888888888762  544 357778888888888


Q ss_pred             CCCCccchh-hhCCCCccEEEccCCcCc
Q 040119           84 NNFFTLPAS-IYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        84 N~~~~lP~~-i~~L~~L~~L~L~~n~~l  110 (366)
                      |+|+.+|.. +..+++|+.|+|++|++.
T Consensus        91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~  118 (174)
T 2r9u_A           91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD  118 (174)
T ss_dssp             SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred             CccceeCHHHhccccCCCEEEeCCCCcc
Confidence            888877754 777788888888887744

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.31  E-value=3.3e-11  Score=114.98  Aligned_cols=118  Identities=20%  Similarity=0.301  Sum_probs=91.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|++|++++|..... +....+++|+.|++++|.+. .+|. +..+++|+.|+|++|.+..  +| .+..+++|++|+
T Consensus        43 l~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~-~~~~-~~~l~~L~~L~L~~n~i~~--~~-~~~~l~~L~~L~  116 (347)
T 4fmz_A           43 LESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQIT-DISP-LSNLVKLTNLYIGTNKITD--IS-ALQNLTNLRELY  116 (347)
T ss_dssp             HTTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEE
T ss_pred             cccccEEEEeCCccccc-hhhhhcCCccEEEccCCccc-cchh-hhcCCcCCEEEccCCcccC--ch-HHcCCCcCCEEE
Confidence            36789999999885433 33566788999999999987 5666 8899999999999999863  54 688999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCC--Ccccceecc
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRL--PASIHGIFL  125 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~l--p~~L~~L~~  125 (366)
                      |++|.+..+|. +..+++|+.|++++|.....++.+  .+.|+.|++
T Consensus       117 l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l  162 (347)
T 4fmz_A          117 LNEDNISDISP-LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTV  162 (347)
T ss_dssp             CTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEEC
T ss_pred             CcCCcccCchh-hccCCceeEEECCCCCCcccccchhhCCCCcEEEe
Confidence            99999998886 888999999999999766555433  224444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.31  E-value=1.4e-12  Score=123.84  Aligned_cols=141  Identities=12%  Similarity=0.109  Sum_probs=90.8

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      ++|+.|+|++|......+ .+..+++|+.|++++|.+.+..|..+ ..+++|+.|+|++|.+..  +|.. ..+++|+.|
T Consensus       120 ~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~--~~~~-~~l~~L~~L  196 (317)
T 3o53_A          120 QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD--VKGQ-VVFAKLKTL  196 (317)
T ss_dssp             SSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCE--EECC-CCCTTCCEE
T ss_pred             CCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcc--cccc-cccccCCEE
Confidence            456666676666443322 23345667777777777775555555 357778888888887753  4433 347788888


Q ss_pred             EccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119           80 HLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN  159 (366)
Q Consensus        80 ~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~  159 (366)
                      +|++|.++.+|..+..+++|+.|+|++|++.    .+|..+.     .+++|+.++++     .+.+....+|.|+....
T Consensus       197 ~Ls~N~l~~l~~~~~~l~~L~~L~L~~N~l~----~l~~~~~-----~l~~L~~L~l~-----~N~~~~~~~~~~~~~~~  262 (317)
T 3o53_A          197 DLSSNKLAFMGPEFQSAAGVTWISLRNNKLV----LIEKALR-----FSQNLEHFDLR-----GNGFHCGTLRDFFSKNQ  262 (317)
T ss_dssp             ECCSSCCCEECGGGGGGTTCSEEECTTSCCC----EECTTCC-----CCTTCCEEECT-----TCCCBHHHHHHHHHTCH
T ss_pred             ECCCCcCCcchhhhcccCcccEEECcCCccc----chhhHhh-----cCCCCCEEEcc-----CCCccCcCHHHHHhccc
Confidence            8888888888777888888888888888744    2333343     66778888776     33333224566766544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.31  E-value=4.2e-11  Score=124.40  Aligned_cols=120  Identities=23%  Similarity=0.311  Sum_probs=88.8

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|++|.+... +.  .+++|+.|++++|.+. .+|.   .+++|+.|+|++|++..  +|.   .+++|+.|+|
T Consensus        61 ~~L~~L~L~~N~l~~l-p~--~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~~--l~~---~l~~L~~L~L  128 (622)
T 3g06_A           61 AHITTLVIPDNNLTSL-PA--LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLTH--LPA---LPSGLCKLWI  128 (622)
T ss_dssp             TTCSEEEECSCCCSCC-CC--CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCCC--CCC---CCTTCCEEEC
T ss_pred             CCCcEEEecCCCCCCC-CC--cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCCC--CCC---CCCCcCEEEC
Confidence            5799999999985532 22  5678999999999997 6876   67889999999999864  776   5677888888


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCC---------cCccEeeCC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGC---------VSLETLSDG  137 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c---------~sL~~l~~~  137 (366)
                      ++|+++.+|..   +++|++|+|++|++. .+|..|.+|+.|+++++         ++|+.|+++
T Consensus       129 ~~N~l~~lp~~---l~~L~~L~Ls~N~l~-~l~~~~~~L~~L~L~~N~l~~l~~~~~~L~~L~Ls  189 (622)
T 3g06_A          129 FGNQLTSLPVL---PPGLQELSVSDNQLA-SLPALPSELCKLWAYNNQLTSLPMLPSGLQELSVS  189 (622)
T ss_dssp             CSSCCSCCCCC---CTTCCEEECCSSCCS-CCCCCCTTCCEEECCSSCCSCCCCCCTTCCEEECC
T ss_pred             CCCCCCcCCCC---CCCCCEEECcCCcCC-CcCCccCCCCEEECCCCCCCCCcccCCCCcEEECC
Confidence            88888877764   467777788777644 46666666766665544         556666655

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.30  E-value=1.8e-12  Score=109.11  Aligned_cols=105  Identities=17%  Similarity=0.068  Sum_probs=90.3

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|..... .....+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+..-..|..++.+++|+.|+
T Consensus        41 l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~  119 (149)
T 2je0_A           41 FEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLD  119 (149)
T ss_dssp             CTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEE
T ss_pred             cCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEe
Confidence            57899999999986655 55667788999999999999768888888999999999999997301348899999999999


Q ss_pred             ccCCCCCccch----hhhCCCCccEEEccC
Q 040119           81 LSGNNFFTLPA----SIYRLSKLSKIFLKD  106 (366)
Q Consensus        81 Ls~N~~~~lP~----~i~~L~~L~~L~L~~  106 (366)
                      +++|.++.+|.    .+..+++|+.|++++
T Consensus       120 l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d  149 (149)
T 2je0_A          120 LFNCEVTNLNDYRENVFKLLPQLTYLDGYD  149 (149)
T ss_dssp             CTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred             CcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence            99999998875    789999999999864

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.30  E-value=1.5e-11  Score=127.49  Aligned_cols=101  Identities=13%  Similarity=0.219  Sum_probs=54.5

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      ++|+.|+|++|.+... +....+++|+.|+|++|.+. .+|. +..+++|+.|+|++|.+..  +| .+..+++|+.|+|
T Consensus        43 ~~L~~L~l~~n~i~~l-~~l~~l~~L~~L~Ls~N~l~-~~~~-l~~l~~L~~L~Ls~N~l~~--l~-~l~~l~~L~~L~L  116 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSV-QGIQYLPNVTKLFLNGNKLT-DIKP-LTNLKNLGWLFLDENKIKD--LS-SLKDLKKLKSLSL  116 (605)
T ss_dssp             TTCCCCBCTTCCCCCC-TTGGGCTTCCEEECTTSCCC-CCGG-GGGCTTCCEEECCSSCCCC--CT-TSTTCTTCCEEEC
T ss_pred             CCCCEEECcCCCCCCC-hHHccCCCCCEEEeeCCCCC-CChh-hccCCCCCEEECcCCCCCC--Ch-hhccCCCCCEEEe
Confidence            4555666665553322 22344455666666666655 3333 5556666666666665542  33 4555566666666


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      ++|.|..+| .+..|++|+.|+|++|++
T Consensus       117 s~N~l~~l~-~l~~l~~L~~L~Ls~N~l  143 (605)
T 1m9s_A          117 EHNGISDIN-GLVHLPQLESLYLGNNKI  143 (605)
T ss_dssp             TTSCCCCCG-GGGGCTTCSEEECCSSCC
T ss_pred             cCCCCCCCc-cccCCCccCEEECCCCcc
Confidence            666655544 355555566666655553

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.29  E-value=5.6e-11  Score=102.90  Aligned_cols=111  Identities=19%  Similarity=0.163  Sum_probs=92.7

Q ss_pred             CCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|+|++|.+....+ .+..+.+|+.|++++|.+....+..+..+++|+.|+|++|.++ +..+..+..+++|+.|+
T Consensus        28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~  106 (177)
T 2o6r_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELA  106 (177)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEE
T ss_pred             CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCcc-ccCHHHhhCCcccCEEE
Confidence            579999999998554333 3456788999999999998555556789999999999999997 44455689999999999


Q ss_pred             ccCCCCCccchh-hhCCCCccEEEccCCcCccCC
Q 040119           81 LSGNNFFTLPAS-IYRLSKLSKIFLKDCKMLQNL  113 (366)
Q Consensus        81 Ls~N~~~~lP~~-i~~L~~L~~L~L~~n~~l~~l  113 (366)
                      |++|.|+.+|.. +..+++|+.|+|++|++.+..
T Consensus       107 l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~  140 (177)
T 2o6r_A          107 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  140 (177)
T ss_dssp             CCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCH
T ss_pred             CcCCcceEeCHHHhcCCcccCEEEecCCCeeccC
Confidence            999999999875 578999999999999977543

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.28  E-value=2e-11  Score=116.50  Aligned_cols=103  Identities=15%  Similarity=0.271  Sum_probs=49.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCc------------
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPS------------   68 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~------------   68 (366)
                      +++|+.|++++|......+....++.|+.|++++|.+. .++. +..+++|+.|++++|.+..  ++.            
T Consensus       131 l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~-~~~~-~~~l~~L~~L~l~~n~l~~--~~~~~~l~~L~~L~l  206 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVK-DVTP-IANLTDLYSLSLNYNQIED--ISPLASLTSLHYFTA  206 (347)
T ss_dssp             CTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCC-CCGG-GGGCTTCSEEECTTSCCCC--CGGGGGCTTCCEEEC
T ss_pred             CCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcC-Cchh-hccCCCCCEEEccCCcccc--cccccCCCccceeec
Confidence            35566666666643333333444445555555555554 2322 4445555555555555431  222            


Q ss_pred             ---------cCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCc
Q 040119           69 ---------GIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        69 ---------~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~  108 (366)
                               .+..+++|+.|+|++|.++.+|. +..+++|+.|++++|+
T Consensus       207 ~~n~l~~~~~~~~~~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~  254 (347)
T 4fmz_A          207 YVNQITDITPVANMTRLNSLKIGNNKITDLSP-LANLSQLTWLEIGTNQ  254 (347)
T ss_dssp             CSSCCCCCGGGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccCCCCCCchhhcCCcCCEEEccCCccCCCcc-hhcCCCCCEEECCCCc
Confidence                     04444455555555555554443 4455555555555554

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.28  E-value=2.3e-11  Score=112.76  Aligned_cols=119  Identities=18%  Similarity=0.171  Sum_probs=98.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|.+....+ ...+++|+.|++++|.+. .+|. +.. ++|+.|+|++|.+..  +| .++.+++|+.|+
T Consensus        62 l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~-~l~~-~~~-~~L~~L~L~~N~l~~--~~-~l~~l~~L~~L~  134 (263)
T 1xeu_A           62 FTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLK-NLNG-IPS-ACLSRLFLDNNELRD--TD-SLIHLKNLEILS  134 (263)
T ss_dssp             CTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCS-CCTT-CCC-SSCCEEECCSSCCSB--SG-GGTTCTTCCEEE
T ss_pred             CCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccC-CcCc-ccc-CcccEEEccCCccCC--Ch-hhcCcccccEEE
Confidence            5789999999998665444 667788999999999998 5666 444 999999999999973  54 699999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|.++.+| .+..+++|+.|+|++|++.+.     ..+.     ++++|+.++++
T Consensus       135 Ls~N~i~~~~-~l~~l~~L~~L~L~~N~i~~~-----~~l~-----~l~~L~~L~l~  180 (263)
T 1xeu_A          135 IRNNKLKSIV-MLGFLSKLEVLDLHGNEITNT-----GGLT-----RLKKVNWIDLT  180 (263)
T ss_dssp             CTTSCCCBCG-GGGGCTTCCEEECTTSCCCBC-----TTST-----TCCCCCEEEEE
T ss_pred             CCCCcCCCCh-HHccCCCCCEEECCCCcCcch-----HHhc-----cCCCCCEEeCC
Confidence            9999999997 799999999999999996642     2233     67777777765

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.28  E-value=2.3e-12  Score=129.91  Aligned_cols=142  Identities=12%  Similarity=0.094  Sum_probs=109.5

Q ss_pred             CCCccEEEeeCCCCCCCCC-CcCCCCCccEEECcCCCCCCCCCccCC-CCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSPSSA-SWFLPFPINLMRWSSDPMALSLPSSLS-GLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-~~~~~~~L~~L~ls~n~l~~~lP~sl~-~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +++|+.|+|++|.+....+ .+..+++|+.|++++|.+.+..|..+. .+++|+.|+|++|.+. + +|. +..+++|+.
T Consensus       119 l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~-~-~~~-~~~l~~L~~  195 (487)
T 3oja_A          119 GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-D-VKG-QVVFAKLKT  195 (487)
T ss_dssp             CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCC-E-EEC-CCCCTTCCE
T ss_pred             cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccc-c-ccc-cccCCCCCE
Confidence            3567888888887554433 344567899999999999987888776 7999999999999997 3 443 446999999


Q ss_pred             EEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119           79 LHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ  158 (366)
Q Consensus        79 L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~  158 (366)
                      |+|++|.|+.+|..+..+++|+.|+|++|++.+    +|..+.     .+++|+.++++     .+.+....+|.|+...
T Consensus       196 L~Ls~N~l~~~~~~~~~l~~L~~L~Ls~N~l~~----lp~~l~-----~l~~L~~L~l~-----~N~l~c~~~~~~~~~l  261 (487)
T 3oja_A          196 LDLSSNKLAFMGPEFQSAAGVTWISLRNNKLVL----IEKALR-----FSQNLEHFDLR-----GNGFHCGTLRDFFSKN  261 (487)
T ss_dssp             EECCSSCCCEECGGGGGGTTCSEEECTTSCCCE----ECTTCC-----CCTTCCEEECT-----TCCBCHHHHHHHHTTC
T ss_pred             EECCCCCCCCCCHhHcCCCCccEEEecCCcCcc----cchhhc-----cCCCCCEEEcC-----CCCCcCcchHHHHHhC
Confidence            999999999999899999999999999999653    444444     67788888876     3333322466776654


Q ss_pred             C
Q 040119          159 N  159 (366)
Q Consensus       159 ~  159 (366)
                      .
T Consensus       262 ~  262 (487)
T 3oja_A          262 Q  262 (487)
T ss_dssp             H
T ss_pred             C
Confidence            4

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=99.28  E-value=6.6e-11  Score=118.28  Aligned_cols=94  Identities=23%  Similarity=0.356  Sum_probs=61.4

Q ss_pred             CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEcc
Q 040119           26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLK  105 (366)
Q Consensus        26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~  105 (366)
                      +|+.|++++|.+. .+| .+..+++|+.|++++|.+..  +|...   .+|+.|++++|.++.+| .+..+++|+.|+++
T Consensus       174 ~L~~L~L~~n~l~-~l~-~~~~l~~L~~L~l~~N~l~~--l~~~~---~~L~~L~l~~n~l~~lp-~~~~l~~L~~L~l~  245 (454)
T 1jl5_A          174 SLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKK--LPDLP---LSLESIVAGNNILEELP-ELQNLPFLTTIYAD  245 (454)
T ss_dssp             TCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSS--CCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECC
T ss_pred             cccEEECcCCcCC-cCc-cccCCCCCCEEECCCCcCCc--CCCCc---CcccEEECcCCcCCccc-ccCCCCCCCEEECC
Confidence            4555555555555 245 36666666666666666642  44332   36667777777777777 37788888888888


Q ss_pred             CCcCccCCCCCCcccceecccCC
Q 040119          106 DCKMLQNLPRLPASIHGIFLDGC  128 (366)
Q Consensus       106 ~n~~l~~lp~lp~~L~~L~~~~c  128 (366)
                      +|++.+ +|..+++++.|+++++
T Consensus       246 ~N~l~~-l~~~~~~L~~L~l~~N  267 (454)
T 1jl5_A          246 NNLLKT-LPDLPPSLEALNVRDN  267 (454)
T ss_dssp             SSCCSS-CCSCCTTCCEEECCSS
T ss_pred             CCcCCc-ccccccccCEEECCCC
Confidence            887553 7777777777777655

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.27  E-value=2.2e-11  Score=126.14  Aligned_cols=146  Identities=18%  Similarity=0.232  Sum_probs=117.7

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|+.|+|++|.+....+ +..+++|+.|+|++|.+. .+| .+..+++|+.|+|++|.+..  + ..+..|++|+.|+
T Consensus        64 l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~-~l~-~l~~l~~L~~L~Ls~N~l~~--l-~~l~~l~~L~~L~  137 (605)
T 1m9s_A           64 LPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIK-DLS-SLKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY  137 (605)
T ss_dssp             CTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCC-CCT-TSTTCTTCCEEECTTSCCCC--C-GGGGGCTTCSEEE
T ss_pred             CCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCC-CCh-hhccCCCCCEEEecCCCCCC--C-ccccCCCccCEEE
Confidence            5899999999998655433 667788999999999997 566 59999999999999999973  4 4689999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      |++|.++.+ ..+..|++|+.|+|++|++.+    +++ +     .++++|+.|+++     .+.+.+  +| .|.... 
T Consensus       138 Ls~N~l~~l-~~l~~l~~L~~L~Ls~N~l~~----~~~-l-----~~l~~L~~L~Ls-----~N~i~~--l~-~l~~l~-  197 (605)
T 1m9s_A          138 LGNNKITDI-TVLSRLTKLDTLSLEDNQISD----IVP-L-----AGLTKLQNLYLS-----KNHISD--LR-ALAGLK-  197 (605)
T ss_dssp             CCSSCCCCC-GGGGSCTTCSEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCCB--CG-GGTTCT-
T ss_pred             CCCCccCCc-hhhcccCCCCEEECcCCcCCC----chh-h-----ccCCCCCEEECc-----CCCCCC--Ch-HHccCC-
Confidence            999999988 579999999999999998654    222 3     378899999887     344432  44 355544 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..++|..|.+
T Consensus       198 --~L~~L~L~~N~l  209 (605)
T 1m9s_A          198 --NLDVLELFSQEC  209 (605)
T ss_dssp             --TCSEEECCSEEE
T ss_pred             --CCCEEEccCCcC
Confidence              788888888776

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.25  E-value=2.9e-12  Score=121.66  Aligned_cols=126  Identities=22%  Similarity=0.307  Sum_probs=94.9

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCC-CCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALS-LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~-lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|+.|++++|......+....+++|+.|++++|.+... +|..+..+++|+.|+|++|.+. +..|..++.+++|+.|+
T Consensus        70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~  148 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLN  148 (336)
T ss_dssp             TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEE
T ss_pred             ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccC-HHHHHHHhcCCCCCEEE
Confidence            567888888887555555555667899999999988754 7777888899999999999887 66788888889999999


Q ss_pred             ccCC-CCC--ccchhhhCCCCccEEEccCC-cCccC-CC----CCCcccceecccCC
Q 040119           81 LSGN-NFF--TLPASIYRLSKLSKIFLKDC-KMLQN-LP----RLPASIHGIFLDGC  128 (366)
Q Consensus        81 Ls~N-~~~--~lP~~i~~L~~L~~L~L~~n-~~l~~-lp----~lp~~L~~L~~~~c  128 (366)
                      |++| .++  .+|..+.++++|+.|++++| .+... ++    .+|.+|+.|++++|
T Consensus       149 L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~  205 (336)
T 2ast_B          149 LSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGY  205 (336)
T ss_dssp             CTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSC
T ss_pred             CCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCC
Confidence            9998 677  47777888899999999988 54421 22    22335666665554

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.23  E-value=6.7e-12  Score=108.89  Aligned_cols=104  Identities=15%  Similarity=0.184  Sum_probs=90.7

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCcc-CCCCCCCcEEEeecCCCCCCCCCc--cCCCCCCCCE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSS-LSGLCSLTKLDISYCDLGEGAIPS--GIGNLCSLEE   78 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~s-l~~L~~L~~L~Ls~n~l~~~~lP~--~i~~L~sL~~   78 (366)
                      ++|+.|+|++|.+... ..+..+++|+.|++++|.+. .+|.. +..+++|+.|+|++|.+..  +|.  .++.+++|+.
T Consensus        42 ~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~L~~N~i~~--~~~~~~l~~l~~L~~  117 (176)
T 1a9n_A           42 DQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTELILTNNSLVE--LGDLDPLASLKSLTY  117 (176)
T ss_dssp             TCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCC-EECSCHHHHCTTCCEEECCSCCCCC--GGGGGGGGGCTTCCE
T ss_pred             CCCCEEECCCCCCCcc-cccccCCCCCEEECCCCccc-ccCcchhhcCCCCCEEECCCCcCCc--chhhHhhhcCCCCCE
Confidence            4899999999986554 55667788999999999998 45544 4899999999999999954  887  8999999999


Q ss_pred             EEccCCCCCccchh----hhCCCCccEEEccCCcC
Q 040119           79 LHLSGNNFFTLPAS----IYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        79 L~Ls~N~~~~lP~~----i~~L~~L~~L~L~~n~~  109 (366)
                      |+|++|.++.+|..    +..+++|+.|++++|+.
T Consensus       118 L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~  152 (176)
T 1a9n_A          118 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKL  152 (176)
T ss_dssp             EECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCH
T ss_pred             EEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCH
Confidence            99999999999975    99999999999999874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.22  E-value=1.3e-10  Score=115.99  Aligned_cols=103  Identities=18%  Similarity=0.311  Sum_probs=57.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|++++|......+ ...+++|+.|++++|.+. .++ .+..+++|+.|+|++|.+. + ++. +..+++|+.|+
T Consensus       198 l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~n~l~-~~~-~l~~l~~L~~L~l~~n~l~-~-~~~-~~~l~~L~~L~  271 (466)
T 1o6v_A          198 LTNLESLIATNNQISDITP-LGILTNLDELSLNGNQLK-DIG-TLASLTNLTDLDLANNQIS-N-LAP-LSGLTKLTELK  271 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCC-CCG-GGGGCTTCSEEECCSSCCC-C-CGG-GTTCTTCSEEE
T ss_pred             CCCCCEEEecCCccccccc-ccccCCCCEEECCCCCcc-cch-hhhcCCCCCEEECCCCccc-c-chh-hhcCCCCCEEE
Confidence            3567777777776443322 333455666666666665 333 3556666666666666664 2 222 55566666666


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++|.++.+|. +..+++|+.|++++|++.
T Consensus       272 l~~n~l~~~~~-~~~l~~L~~L~L~~n~l~  300 (466)
T 1o6v_A          272 LGANQISNISP-LAGLTALTNLELNENQLE  300 (466)
T ss_dssp             CCSSCCCCCGG-GTTCTTCSEEECCSSCCS
T ss_pred             CCCCccCcccc-ccCCCccCeEEcCCCccc
Confidence            66666655554 555556666666655533

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.21  E-value=8.3e-11  Score=117.33  Aligned_cols=105  Identities=23%  Similarity=0.307  Sum_probs=82.0

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|..... +....+++|+.|++++|.+.+ ++. +..+++|+.|+|++|.+..  +|. +..+++|+.|+
T Consensus       220 l~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~~-~~~-~~~l~~L~~L~l~~n~l~~--~~~-~~~l~~L~~L~  293 (466)
T 1o6v_A          220 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQISN-LAP-LSGLTKLTELKLGANQISN--ISP-LAGLTALTNLE  293 (466)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCCC-CGG-GTTCTTCSEEECCSSCCCC--CGG-GTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCcccc-hhhhcCCCCCEEECCCCcccc-chh-hhcCCCCCEEECCCCccCc--ccc-ccCCCccCeEE
Confidence            46889999999875432 345566778899999998874 444 7888889999999998863  444 78888899999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQN  112 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~  112 (366)
                      |++|.++.+|. +..+++|+.|++++|++.+.
T Consensus       294 L~~n~l~~~~~-~~~l~~L~~L~L~~n~l~~~  324 (466)
T 1o6v_A          294 LNENQLEDISP-ISNLKNLTYLTLYFNNISDI  324 (466)
T ss_dssp             CCSSCCSCCGG-GGGCTTCSEEECCSSCCSCC
T ss_pred             cCCCcccCchh-hcCCCCCCEEECcCCcCCCc
Confidence            99888887775 78888888899888886553

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.14  E-value=3.5e-10  Score=98.33  Aligned_cols=98  Identities=18%  Similarity=0.305  Sum_probs=83.2

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEEEcc
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKIFLK  105 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L~L~  105 (366)
                      -+.+++++|.+. .+|..+.  ++|+.|+|++|++. +..|..|+.+++|+.|+|++|+|+.+|.. +.++++|+.|+|+
T Consensus        14 ~~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~-~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~   89 (174)
T 2r9u_A           14 QTLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLN   89 (174)
T ss_dssp             SSEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CcEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCcc-ccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECC
Confidence            468999999996 8998764  89999999999998 66688999999999999999999999876 5899999999999


Q ss_pred             CCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119          106 DCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       106 ~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++.    .+|+. +.     ++++|+.|++.
T Consensus        90 ~N~l~----~l~~~~~~-----~l~~L~~L~L~  113 (174)
T 2r9u_A           90 DNHLK----SIPRGAFD-----NLKSLTHIYLY  113 (174)
T ss_dssp             SSCCC----CCCTTTTT-----TCTTCSEEECC
T ss_pred             CCccc----eeCHHHhc-----cccCCCEEEeC
Confidence            99855    33333 33     67788888877

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.13  E-value=1.2e-10  Score=119.67  Aligned_cols=100  Identities=22%  Similarity=0.328  Sum_probs=86.2

Q ss_pred             CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEcc
Q 040119           26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLK  105 (366)
Q Consensus        26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~  105 (366)
                      .|+.|++++|.+. .+|. +..+++|+.|+|++|.+..  +|..|+.|++|+.|+|++|.|+.+| .++++++|+.|+|+
T Consensus       442 ~L~~L~Ls~n~l~-~lp~-~~~l~~L~~L~Ls~N~l~~--lp~~~~~l~~L~~L~Ls~N~l~~lp-~l~~l~~L~~L~Ls  516 (567)
T 1dce_A          442 DVRVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLC  516 (567)
T ss_dssp             TCSEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECC
T ss_pred             CceEEEecCCCCC-CCcC-ccccccCcEeecCcccccc--cchhhhcCCCCCEEECCCCCCCCCc-ccCCCCCCcEEECC
Confidence            4789999999998 5887 9999999999999999964  9999999999999999999999999 89999999999999


Q ss_pred             CCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119          106 DCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       106 ~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++.+..  .|..+.     ++++|+.|+++
T Consensus       517 ~N~l~~~~--~p~~l~-----~l~~L~~L~L~  541 (567)
T 1dce_A          517 NNRLQQSA--AIQPLV-----SCPRLVLLNLQ  541 (567)
T ss_dssp             SSCCCSSS--TTGGGG-----GCTTCCEEECT
T ss_pred             CCCCCCCC--CcHHHh-----cCCCCCEEEec
Confidence            99865421  145555     78888888887

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.12  E-value=4.4e-10  Score=108.02  Aligned_cols=104  Identities=18%  Similarity=0.067  Sum_probs=44.7

Q ss_pred             CccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCc-cCCCCCCCcE-EEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            3 NLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPS-SLSGLCSLTK-LDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~-sl~~L~~L~~-L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +|++|+|++|++.. +...+..+++|+.|++++|.+.+.+|. .|.++++|+. +.+++|++. ...|..|..+++|++|
T Consensus        31 ~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~-~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           31 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLL-YINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCC-EECTTSBCCCTTCCEE
T ss_pred             CCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCccc-ccCchhhhhccccccc
Confidence            44555555554322 222334444455555555554333332 2344444433 333344443 2223444555555555


Q ss_pred             EccCCCCCccch-hhhCCCCccEEEccCC
Q 040119           80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDC  107 (366)
Q Consensus        80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n  107 (366)
                      ++++|.++.+|. .+....++..|++.++
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~  138 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDN  138 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESC
T ss_pred             cccccccccCCchhhcccchhhhhhhccc
Confidence            555555554432 2223334444444443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.11  E-value=5.5e-10  Score=96.50  Aligned_cols=98  Identities=21%  Similarity=0.286  Sum_probs=82.9

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchh-hhCCCCccEEEcc
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLSKIFLK  105 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~~L~L~  105 (366)
                      .+.+++++|.+. .+|..+  .++|+.|+|++|++. +..|..|..+++|+.|+|++|+|+.+|.. +.++++|++|+|+
T Consensus        11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCC-CCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCC-ccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            578999999997 788866  489999999999998 66688899999999999999999998865 5899999999999


Q ss_pred             CCcCccCCCCCCcc-cceecccCCcCccEeeCC
Q 040119          106 DCKMLQNLPRLPAS-IHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       106 ~n~~l~~lp~lp~~-L~~L~~~~c~sL~~l~~~  137 (366)
                      +|++.+    +|+. +.     ++++|+.|+++
T Consensus        87 ~N~l~~----~~~~~~~-----~l~~L~~L~L~  110 (170)
T 3g39_A           87 DNQLKS----IPRGAFD-----NLKSLTHIWLL  110 (170)
T ss_dssp             SSCCCC----CCTTTTT-----TCTTCCEEECC
T ss_pred             CCccCE----eCHHHhc-----CCCCCCEEEeC
Confidence            999553    3332 33     67788888887

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.5e-10  Score=109.15  Aligned_cols=103  Identities=17%  Similarity=0.038  Sum_probs=76.9

Q ss_pred             EEEeeCC-CCCCCCCCcCCCCCccEEECcC-CCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            6 ELSFRGC-KGSPSSASWFLPFPINLMRWSS-DPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         6 ~L~Ls~n-~~~~~~~~~~~~~~L~~L~ls~-n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      .++++++ .+.. .|....+.+|+.|+|++ |.+.+..|..|.+|++|+.|+|++|+|. +..|..|+.|++|+.|+|++
T Consensus        12 ~v~~~~~n~l~~-ip~l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALDS-LHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCTT-TTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCCc-cCCCCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccc-eeCHHHhcCCcCCCEEeCCC
Confidence            4677776 4333 22245556788888885 8887655577888888888888888887 66677788888888888888


Q ss_pred             CCCCccchhhhCCCCccEEEccCCcCc
Q 040119           84 NNFFTLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        84 N~~~~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      |+|+.+|..+.....|+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLSLQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCCC
T ss_pred             CccceeCHHHcccCCceEEEeeCCCcc
Confidence            888888865554444888888888754

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.05  E-value=7.9e-12  Score=121.53  Aligned_cols=109  Identities=16%  Similarity=0.161  Sum_probs=77.6

Q ss_pred             CCCccEEEeeCCCCCCCC-----CCcCCCCCccEEECcCCCC---CCCCCccC-------CCCCCCcEEEeecCCCCCC-
Q 040119            1 MKNLKELSFRGCKGSPSS-----ASWFLPFPINLMRWSSDPM---ALSLPSSL-------SGLCSLTKLDISYCDLGEG-   64 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~-----~~~~~~~~L~~L~ls~n~l---~~~lP~sl-------~~L~~L~~L~Ls~n~l~~~-   64 (366)
                      +++|++|+|++|.+....     .....+++|+.|++++|.+   .+.+|..+       ..+++|+.|+|++|.+. + 
T Consensus        31 ~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~-~~  109 (386)
T 2ca6_A           31 DDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFG-PT  109 (386)
T ss_dssp             CSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCC-TT
T ss_pred             CCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCC-HH
Confidence            467889999988744221     1133466788888888644   33455544       67888999999998886 4 


Q ss_pred             ---CCCccCCCCCCCCEEEccCCCCC-----ccchhhhCC---------CCccEEEccCCcCc
Q 040119           65 ---AIPSGIGNLCSLEELHLSGNNFF-----TLPASIYRL---------SKLSKIFLKDCKML  110 (366)
Q Consensus        65 ---~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L---------~~L~~L~L~~n~~l  110 (366)
                         .+|..+..+++|++|+|++|.|.     .++..+..+         ++|+.|+|++|++.
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence               36777888888888888888886     234445555         88888888888865

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.04  E-value=1.3e-12  Score=115.67  Aligned_cols=82  Identities=23%  Similarity=0.275  Sum_probs=49.4

Q ss_pred             CCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEE
Q 040119           23 LPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKI  102 (366)
Q Consensus        23 ~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L  102 (366)
                      .+++|+.|++++|.+. .+| .+..+++|+.|+|++|.+..  +|..+..+++|+.|+|++|.++.+| .+..+++|+.|
T Consensus        46 ~l~~L~~L~ls~n~l~-~l~-~~~~l~~L~~L~l~~n~l~~--l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L  120 (198)
T 1ds9_A           46 TLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVL  120 (198)
T ss_dssp             HTTTCSEEECSEEEES-CCC-CHHHHTTCCEEEEEEEEECS--CSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEE
T ss_pred             cCCCCCEEECCCCCCc-ccc-ccccCCCCCEEECCCCCccc--ccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEE
Confidence            3455666666666665 355 45666666666666666642  5655555566666666666666655 45566666666


Q ss_pred             EccCCcC
Q 040119          103 FLKDCKM  109 (366)
Q Consensus       103 ~L~~n~~  109 (366)
                      ++++|++
T Consensus       121 ~l~~N~i  127 (198)
T 1ds9_A          121 YMSNNKI  127 (198)
T ss_dssp             EESEEEC
T ss_pred             ECCCCcC
Confidence            6666653

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.04  E-value=1.2e-11  Score=117.41  Aligned_cols=107  Identities=14%  Similarity=0.201  Sum_probs=79.0

Q ss_pred             CCCccEEEeeCCCCCCC--CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecC-CCCCC-CCCccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPS--SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYC-DLGEG-AIPSGIGNLCSL   76 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~--~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n-~l~~~-~lP~~i~~L~sL   76 (366)
                      +++|++|+|++|.....  ......+++|+.|++++|.+....|..+..+++|+.|+|++| .++ + .+|..+..+++|
T Consensus        92 ~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~-~~~l~~~~~~~~~L  170 (336)
T 2ast_B           92 PFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFS-EFALQTLLSSCSRL  170 (336)
T ss_dssp             CBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCC-HHHHHHHHHHCTTC
T ss_pred             CCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCC-HHHHHHHHhcCCCC
Confidence            46788888888874321  122345577888888888887677777888888888888888 565 3 366667778888


Q ss_pred             CEEEccCC-CCCc--cchhhhCCC-CccEEEccCCc
Q 040119           77 EELHLSGN-NFFT--LPASIYRLS-KLSKIFLKDCK  108 (366)
Q Consensus        77 ~~L~Ls~N-~~~~--lP~~i~~L~-~L~~L~L~~n~  108 (366)
                      +.|+|++| .++.  +|..+..++ +|+.|++++|.
T Consensus       171 ~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~  206 (336)
T 2ast_B          171 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR  206 (336)
T ss_dssp             CEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCG
T ss_pred             CEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCc
Confidence            88888888 7773  677778888 88888888884

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.01  E-value=8.5e-12  Score=121.31  Aligned_cols=109  Identities=15%  Similarity=0.115  Sum_probs=80.9

Q ss_pred             CCCccEEEeeCCCCCC---CCCC--------cCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSP---SSAS--------WFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEGA   65 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~---~~~~--------~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~~   65 (366)
                      +++|++|+|++|....   ..+.        +..+++|+.|++++|.+..    .+|..+..+++|+.|+|++|.+. ..
T Consensus        59 ~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~-~~  137 (386)
T 2ca6_A           59 KKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-PQ  137 (386)
T ss_dssp             CTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCH-HH
T ss_pred             CCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCC-HH
Confidence            4789999999985321   1111        1356789999999999986    47778888999999999999885 32


Q ss_pred             CC----ccCCCC---------CCCCEEEccCCCCC--ccc---hhhhCCCCccEEEccCCcCc
Q 040119           66 IP----SGIGNL---------CSLEELHLSGNNFF--TLP---ASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        66 lP----~~i~~L---------~sL~~L~Ls~N~~~--~lP---~~i~~L~~L~~L~L~~n~~l  110 (366)
                      .+    ..+..+         ++|++|+|++|.++  .+|   ..+..+++|+.|+|++|++.
T Consensus       138 ~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~  200 (386)
T 2ca6_A          138 AGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIR  200 (386)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCC
T ss_pred             HHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCC
Confidence            23    333333         88999999999986  455   56778889999999999754

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.95  E-value=5.7e-11  Score=114.74  Aligned_cols=165  Identities=13%  Similarity=0.173  Sum_probs=98.7

Q ss_pred             CCccEEEeeCCCCCCCC-----CCcCCCC-CccEEECcCCCCCCCCCccCCCC-----CCCcEEEeecCCCCCCCCCcc-
Q 040119            2 KNLKELSFRGCKGSPSS-----ASWFLPF-PINLMRWSSDPMALSLPSSLSGL-----CSLTKLDISYCDLGEGAIPSG-   69 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~-----~~~~~~~-~L~~L~ls~n~l~~~lP~sl~~L-----~~L~~L~Ls~n~l~~~~lP~~-   69 (366)
                      ++|++|+|++|.+....     ..+...+ +|+.|++++|.+....+..+..+     ++|+.|+|++|.+. +..+.. 
T Consensus        22 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~-~~~~~~l  100 (362)
T 3goz_A           22 HGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLS-YKSSDEL  100 (362)
T ss_dssp             TTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGG-GSCHHHH
T ss_pred             CCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCC-hHHHHHH
Confidence            35888888888744332     2233445 68888888888876656556554     78888888888886 344443 


Q ss_pred             ---CCCC-CCCCEEEccCCCCCccch-h----hhC-CCCccEEEccCCcCccC----C----CCCCcccceecccCC---
Q 040119           70 ---IGNL-CSLEELHLSGNNFFTLPA-S----IYR-LSKLSKIFLKDCKMLQN----L----PRLPASIHGIFLDGC---  128 (366)
Q Consensus        70 ---i~~L-~sL~~L~Ls~N~~~~lP~-~----i~~-L~~L~~L~L~~n~~l~~----l----p~lp~~L~~L~~~~c---  128 (366)
                         +..+ ++|+.|+|++|.++..+. .    +.. .++|+.|+|++|++...    +    ...|.+|+.|++++|   
T Consensus       101 ~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~  180 (362)
T 3goz_A          101 VKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLA  180 (362)
T ss_dssp             HHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGG
T ss_pred             HHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCc
Confidence               3333 778888888888875542 2    334 25788888888875521    1    123446666665543   


Q ss_pred             ---------------cCccEeeCCCCCCcccccCC---CCCCcccccCCCCCceEEEECCCCCC
Q 040119          129 ---------------VSLETLSDGYWRDCSIVVPG---SEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       129 ---------------~sL~~l~~~~f~~~~~~l~g---~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                                     ++|+.|+++     .+.+.+   ..+|..+....  .++..++|+.|.+
T Consensus       181 ~~~~~~l~~~l~~~~~~L~~L~Ls-----~N~i~~~~~~~l~~~l~~~~--~~L~~L~Ls~N~l  237 (362)
T 3goz_A          181 SKNCAELAKFLASIPASVTSLDLS-----ANLLGLKSYAELAYIFSSIP--NHVVSLNLCLNCL  237 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECT-----TSCGGGSCHHHHHHHHHHSC--TTCCEEECCSSCC
T ss_pred             hhhHHHHHHHHHhCCCCCCEEECC-----CCCCChhHHHHHHHHHhcCC--CCceEEECcCCCC
Confidence                           355666555     222221   11344444311  1577788887776

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=98.93  E-value=5.3e-12  Score=111.65  Aligned_cols=106  Identities=19%  Similarity=0.218  Sum_probs=66.5

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|+|++|.+.. .+....+++|+.|++++|.+. .+|..+..+++|+.|+|++|.+..  +| .++.+++|+.|+
T Consensus        47 l~~L~~L~ls~n~l~~-l~~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~--l~-~~~~l~~L~~L~  121 (198)
T 1ds9_A           47 LKACKHLALSTNNIEK-ISSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCSEEECSEEEESC-CCCHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC--HH-HHHHHHHSSEEE
T ss_pred             CCCCCEEECCCCCCcc-ccccccCCCCCEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc--CC-ccccCCCCCEEE
Confidence            3566777777666333 223444456677777777665 566655556667777777776652  44 466666677777


Q ss_pred             ccCCCCCccch--hhhCCCCccEEEccCCcCcc
Q 040119           81 LSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        81 Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~  111 (366)
                      |++|.++.+|.  .+..+++|+.|++++|++.+
T Consensus       122 l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~  154 (198)
T 1ds9_A          122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYN  154 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSCHHHH
T ss_pred             CCCCcCCchhHHHHHhcCCCCCEEEecCCcccc
Confidence            77777766553  56667777777777776544

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=98.88  E-value=6.6e-09  Score=99.20  Aligned_cols=81  Identities=21%  Similarity=0.199  Sum_probs=70.4

Q ss_pred             cEEECcCC-CCCCCCCccCCCCCCCcEEEeec-CCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEc
Q 040119           28 NLMRWSSD-PMALSLPSSLSGLCSLTKLDISY-CDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFL  104 (366)
Q Consensus        28 ~~L~ls~n-~l~~~lP~sl~~L~~L~~L~Ls~-n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L  104 (366)
                      ..++++++ .+. .+|. |..+++|+.|+|++ |.|. +..|..|+.|++|+.|+|++|+|+.+| ..|.+|++|+.|+|
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~-~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l   87 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQ-HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNL   87 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCC-EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEEC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCC-CcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeC
Confidence            35688888 887 7999 99999999999996 9997 444578999999999999999999776 47899999999999


Q ss_pred             cCCcCcc
Q 040119          105 KDCKMLQ  111 (366)
Q Consensus       105 ~~n~~l~  111 (366)
                      ++|++.+
T Consensus        88 ~~N~l~~   94 (347)
T 2ifg_A           88 SFNALES   94 (347)
T ss_dssp             CSSCCSC
T ss_pred             CCCccce
Confidence            9999654

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=98.87  E-value=5e-09  Score=100.62  Aligned_cols=57  Identities=25%  Similarity=0.182  Sum_probs=29.3

Q ss_pred             CCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc-CCCCCccch-hhhCCCCccEEEccCCc
Q 040119           50 SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS-GNNFFTLPA-SIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        50 ~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls-~N~~~~lP~-~i~~L~~L~~L~L~~n~  108 (366)
                      .|+.|+|++|.|.+  +|.......+|+.|+++ +|.++.+|. .+.++++|+.|+|++|+
T Consensus       155 ~l~~L~L~~N~i~~--i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~  213 (350)
T 4ay9_X          155 ESVILWLNKNGIQE--IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTR  213 (350)
T ss_dssp             SCEEEECCSSCCCE--ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSC
T ss_pred             hhhhhccccccccC--CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCC
Confidence            35555555555532  55444444555555554 244555553 34555555555555555

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=98.87  E-value=4.1e-10  Score=108.65  Aligned_cols=162  Identities=15%  Similarity=0.105  Sum_probs=111.8

Q ss_pred             EEEeeCCCCCCCCCCcCCCCC-ccEEECcCCCCCCCCC----ccCCCCC-CCcEEEeecCCCCCCCCCccCCCC-----C
Q 040119            6 ELSFRGCKGSPSSASWFLPFP-INLMRWSSDPMALSLP----SSLSGLC-SLTKLDISYCDLGEGAIPSGIGNL-----C   74 (366)
Q Consensus         6 ~L~Ls~n~~~~~~~~~~~~~~-L~~L~ls~n~l~~~lP----~sl~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L-----~   74 (366)
                      .+.|++|......+.+...+. |+.|++++|.+....+    ..+..++ +|+.|+|++|.+. +..+..+..+     +
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~-~~~~~~l~~~l~~~~~   80 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLG-FKNSDELVQILAAIPA   80 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGG-GSCHHHHHHHHHTSCT
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCC-HHHHHHHHHHHhccCC
Confidence            467888887666555555544 9999999999985555    6778888 8999999999997 5556666665     8


Q ss_pred             CCCEEEccCCCCCccc-hh----hhCC-CCccEEEccCCcCccCCC--------CCCcccceecccCC------------
Q 040119           75 SLEELHLSGNNFFTLP-AS----IYRL-SKLSKIFLKDCKMLQNLP--------RLPASIHGIFLDGC------------  128 (366)
Q Consensus        75 sL~~L~Ls~N~~~~lP-~~----i~~L-~~L~~L~L~~n~~l~~lp--------~lp~~L~~L~~~~c------------  128 (366)
                      +|+.|+|++|.++..+ ..    +..+ ++|+.|+|++|++....+        .+|.+|+.|+++++            
T Consensus        81 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~  160 (362)
T 3goz_A           81 NVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQ  160 (362)
T ss_dssp             TCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHH
T ss_pred             CccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHH
Confidence            9999999999998554 32    5556 899999999999654322        12567888877654            


Q ss_pred             ------cCccEeeCCCCCCcccccCCCCCCcccccC-CCC-CceEEEECCCCCC
Q 040119          129 ------VSLETLSDGYWRDCSIVVPGSEIPEWFEYQ-NNE-GSSITISTPPKTY  174 (366)
Q Consensus       129 ------~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~-~~~-g~~~~l~L~~n~~  174 (366)
                            ++|+.|+++     .+.+.+ ..+.++... ... .++..++|+.|.+
T Consensus       161 ~l~~~~~~L~~L~Ls-----~n~l~~-~~~~~l~~~l~~~~~~L~~L~Ls~N~i  208 (362)
T 3goz_A          161 ILAAIPANVNSLNLR-----GNNLAS-KNCAELAKFLASIPASVTSLDLSANLL  208 (362)
T ss_dssp             HHHTSCTTCCEEECT-----TSCGGG-SCHHHHHHHHHTSCTTCCEEECTTSCG
T ss_pred             HHhcCCccccEeeec-----CCCCch-hhHHHHHHHHHhCCCCCCEEECCCCCC
Confidence                  256666554     222222 223333221 001 2688889888887

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.70  E-value=4.7e-10  Score=110.87  Aligned_cols=36  Identities=14%  Similarity=0.079  Sum_probs=18.1

Q ss_pred             CCCCCEEEccCCCCCc-----cchhhhCCCCccEEEccCCc
Q 040119           73 LCSLEELHLSGNNFFT-----LPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        73 L~sL~~L~Ls~N~~~~-----lP~~i~~L~~L~~L~L~~n~  108 (366)
                      +++|+.|+|++|.++.     +|..+..+++|+.|++++|+
T Consensus       255 ~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~  295 (461)
T 1z7x_W          255 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNE  295 (461)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCC
T ss_pred             CCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCC
Confidence            4455555555555543     44444445555555555554

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=98.60  E-value=3.3e-09  Score=104.76  Aligned_cols=108  Identities=19%  Similarity=0.220  Sum_probs=55.5

Q ss_pred             CCccEEEeeCCCCCCC-----CCCcCCCCCccEEECcCCCCCCCCCccCC-----CCCCCcEEEeecCCCCCCC----CC
Q 040119            2 KNLKELSFRGCKGSPS-----SASWFLPFPINLMRWSSDPMALSLPSSLS-----GLCSLTKLDISYCDLGEGA----IP   67 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-----~~~~~~~~~L~~L~ls~n~l~~~lP~sl~-----~L~~L~~L~Ls~n~l~~~~----lP   67 (366)
                      ++|++|+|++|.....     ......+++|+.|++++|.+....+..+.     ..++|+.|+|++|.++ +.    +|
T Consensus       256 ~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~-~~~~~~l~  334 (461)
T 1z7x_W          256 SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFT-AACCSHFS  334 (461)
T ss_dssp             CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCB-GGGHHHHH
T ss_pred             CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCc-hHHHHHHH
Confidence            5677777777754321     11122245566777776666432221111     2246666666666664 22    34


Q ss_pred             ccCCCCCCCCEEEccCCCCCcc-chhhh----C-CCCccEEEccCCcCc
Q 040119           68 SGIGNLCSLEELHLSGNNFFTL-PASIY----R-LSKLSKIFLKDCKML  110 (366)
Q Consensus        68 ~~i~~L~sL~~L~Ls~N~~~~l-P~~i~----~-L~~L~~L~L~~n~~l  110 (366)
                      ..+..+++|+.|+|++|.+... +..+.    . .++|+.|++++|++.
T Consensus       335 ~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~  383 (461)
T 1z7x_W          335 SVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS  383 (461)
T ss_dssp             HHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCC
T ss_pred             HHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCCCC
Confidence            4455556666666666666522 22222    1 456666666666543

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.56  E-value=3.3e-07  Score=86.98  Aligned_cols=60  Identities=12%  Similarity=0.032  Sum_probs=42.9

Q ss_pred             CCCccEEEeeCCCCC---------------------CCCCCcCC--------CCCccEEECcCCCCCCCCCccCCCCCCC
Q 040119            1 MKNLKELSFRGCKGS---------------------PSSASWFL--------PFPINLMRWSSDPMALSLPSSLSGLCSL   51 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~---------------------~~~~~~~~--------~~~L~~L~ls~n~l~~~lP~sl~~L~~L   51 (366)
                      +++|+.|||++|++.                     ++...+..        +.+|+.+.+.. .+...-+.+|.++++|
T Consensus        48 l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L  126 (329)
T 3sb4_A           48 FPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKGKQTLEKVILSE-KIKNIEDAAFKGCDNL  126 (329)
T ss_dssp             CTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEECTTCCC-CBCT-TCCEECTTTTTTCTTC
T ss_pred             hccCeEEecCcceeEEecCccccccccccccccccccCHHHhcccccccccccCCCcEEECCc-cccchhHHHhhcCccc
Confidence            578999999999854                     22334445        67788888887 6664445567888888


Q ss_pred             cEEEeecCCC
Q 040119           52 TKLDISYCDL   61 (366)
Q Consensus        52 ~~L~Ls~n~l   61 (366)
                      +.|+|++|.+
T Consensus       127 ~~l~l~~n~i  136 (329)
T 3sb4_A          127 KICQIRKKTA  136 (329)
T ss_dssp             CEEEBCCSSC
T ss_pred             ceEEcCCCCc
Confidence            8888888875

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.48  E-value=1e-08  Score=104.51  Aligned_cols=107  Identities=15%  Similarity=0.103  Sum_probs=47.5

Q ss_pred             CCCccEEEeeCCCCCCCCCC-cCC-CCC-ccEEECcCCCC-CC-CCCccCCCCCCCcEEEeecCCCCCCC----CCccCC
Q 040119            1 MKNLKELSFRGCKGSPSSAS-WFL-PFP-INLMRWSSDPM-AL-SLPSSLSGLCSLTKLDISYCDLGEGA----IPSGIG   71 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~-~~~-~~~-L~~L~ls~n~l-~~-~lP~sl~~L~~L~~L~Ls~n~l~~~~----lP~~i~   71 (366)
                      +++|++|+|++|........ ... .+. |+.|++++|.. .. .++..+..+++|+.|+|++|.+. +.    ++..+.
T Consensus       111 ~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~-~~~~~~l~~~~~  189 (592)
T 3ogk_B          111 LRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFS-EKDGKWLHELAQ  189 (592)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEE-CCCSHHHHHHHH
T ss_pred             CCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECcccccc-CcchhHHHHHHh
Confidence            35666677766642211100 000 112 55555555541 00 11222234555555666555553 22    222233


Q ss_pred             CCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCc
Q 040119           72 NLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      .+++|+.|+|++|.++     .++..+.++++|+.|++++|.
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~  231 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFE  231 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCB
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCcc
Confidence            4455555555555554     233334455555555555554

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=98.33  E-value=1.5e-07  Score=95.87  Aligned_cols=109  Identities=14%  Similarity=0.029  Sum_probs=61.7

Q ss_pred             CCCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCC----CCCCccCCCCCCCcEEEeecCCCCC--------
Q 040119            1 MKNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMA----LSLPSSLSGLCSLTKLDISYCDLGE--------   63 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~----~~lP~sl~~L~~L~~L~Ls~n~l~~--------   63 (366)
                      +++|++|+|++|.......     ....+++|+.|++++|.+.    ..++..+.++++|+.|+|++|.+..        
T Consensus       163 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~  242 (592)
T 3ogk_B          163 CRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAA  242 (592)
T ss_dssp             CTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHC
T ss_pred             CCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhh
Confidence            4567777777765321110     1112345666666666654    1233334455666666666665431        


Q ss_pred             -----------------CCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcC
Q 040119           64 -----------------GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        64 -----------------~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                                       +..+..+..+++|+.|+++++....+|..+..+++|+.|+|++|.+
T Consensus       243 ~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l  305 (592)
T 3ogk_B          243 ANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALL  305 (592)
T ss_dssp             TTCCEEEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCC
T ss_pred             hHHHhhcccccccccchHHHHHHhhccccccccCccccchhHHHHHHhhcCCCcEEecCCCcC
Confidence                             1123345555566666666655556777777788888888888874

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=98.32  E-value=3e-08  Score=100.93  Aligned_cols=85  Identities=12%  Similarity=0.073  Sum_probs=47.2

Q ss_pred             CCCccEEECcCCCCCCCCCccCC-CCCCCcEEEeecC-CCCCCCCCccCCCCCCCCEEEccCCCCCc-----cchhhhCC
Q 040119           24 PFPINLMRWSSDPMALSLPSSLS-GLCSLTKLDISYC-DLGEGAIPSGIGNLCSLEELHLSGNNFFT-----LPASIYRL   96 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~~lP~sl~-~L~~L~~L~Ls~n-~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~~i~~L   96 (366)
                      .+.|+.|++++|.+....+..+. .+++|+.|+|++| .+....++..+..+++|++|+|++|.++.     ++.....+
T Consensus       104 ~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~  183 (594)
T 2p1m_B          104 YTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY  183 (594)
T ss_dssp             CTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTC
T ss_pred             CCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcC
Confidence            45677777777766654444443 4667777777776 33211133333456666677766666542     22222345


Q ss_pred             CCccEEEccCCc
Q 040119           97 SKLSKIFLKDCK  108 (366)
Q Consensus        97 ~~L~~L~L~~n~  108 (366)
                      ++|+.|++++|.
T Consensus       184 ~~L~~L~l~~~~  195 (594)
T 2p1m_B          184 TSLVSLNISCLA  195 (594)
T ss_dssp             CCCCEEECTTCC
T ss_pred             CcCcEEEecccC
Confidence            566666666664

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.30  E-value=1.3e-08  Score=99.01  Aligned_cols=159  Identities=14%  Similarity=0.128  Sum_probs=105.0

Q ss_pred             CCccEEEeeCCCCCCCCC-----Cc-CCCCCccEEECcCCCCCCCCCccC-CCCCCCcEEEeecCCCCCCCCCccC----
Q 040119            2 KNLKELSFRGCKGSPSSA-----SW-FLPFPINLMRWSSDPMALSLPSSL-SGLCSLTKLDISYCDLGEGAIPSGI----   70 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-----~~-~~~~~L~~L~ls~n~l~~~lP~sl-~~L~~L~~L~Ls~n~l~~~~lP~~i----   70 (366)
                      ++|+.|+|++|.+.....     .. .....|+.|++++|.+...-...+ ..+++|+.|+|++|.+. ..-...+    
T Consensus        72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~-~~~~~~L~~~L  150 (372)
T 3un9_A           72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLG-PEACKDLRDLL  150 (372)
T ss_dssp             TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCC-HHHHHHHHHHH
T ss_pred             hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCC-HHHHHHHHHHH
Confidence            679999999998542111     01 122579999999999864322223 34678999999999996 2222222    


Q ss_pred             -CCCCCCCEEEccCCCCCc-----cchhhhCCCCccEEEccCCcCccC-CCCCCcccceecccCCcCccEeeCCCCCCcc
Q 040119           71 -GNLCSLEELHLSGNNFFT-----LPASIYRLSKLSKIFLKDCKMLQN-LPRLPASIHGIFLDGCVSLETLSDGYWRDCS  143 (366)
Q Consensus        71 -~~L~sL~~L~Ls~N~~~~-----lP~~i~~L~~L~~L~L~~n~~l~~-lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~  143 (366)
                       ...++|+.|+|++|.|+.     ++..+..+++|++|+|++|.+... ...++..+.     .+++|+.|+++     .
T Consensus       151 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~-----~~~~L~~L~Ls-----~  220 (372)
T 3un9_A          151 LHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLD-----RNRQLQELNVA-----Y  220 (372)
T ss_dssp             HSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGG-----GCSCCCEEECC-----S
T ss_pred             HhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHh-----cCCCcCeEECC-----C
Confidence             346789999999999973     666778899999999999985421 001122222     55677777776     2


Q ss_pred             cccCC---CCCCcccccCCCCCceEEEECCCCCC
Q 040119          144 IVVPG---SEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       144 ~~l~g---~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                      +.+..   ..++..+....   ++.+++|+.|.+
T Consensus       221 N~i~~~g~~~l~~~L~~~~---~L~~L~Ls~N~i  251 (372)
T 3un9_A          221 NGAGDTAALALARAAREHP---SLELLHLYFNEL  251 (372)
T ss_dssp             SCCCHHHHHHHHHHHHHCS---SCCEEECTTSSC
T ss_pred             CCCCHHHHHHHHHHHHhCC---CCCEEeccCCCC
Confidence            33322   12445554444   688999999988

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=98.26  E-value=5.1e-08  Score=94.89  Aligned_cols=131  Identities=18%  Similarity=0.177  Sum_probs=91.3

Q ss_pred             CCccEEEeeCCCCCCCC--CCcCCCCCccEEECcCCCCCCCCCccC-----CCCCCCcEEEeecCCCCC---CCCCccCC
Q 040119            2 KNLKELSFRGCKGSPSS--ASWFLPFPINLMRWSSDPMALSLPSSL-----SGLCSLTKLDISYCDLGE---GAIPSGIG   71 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~--~~~~~~~~L~~L~ls~n~l~~~lP~sl-----~~L~~L~~L~Ls~n~l~~---~~lP~~i~   71 (366)
                      ++|+.|+|++|.+....  .....+.+|+.|++++|.+...-...+     ...++|+.|+|++|.+.+   ..++..+.
T Consensus       101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~  180 (372)
T 3un9_A          101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA  180 (372)
T ss_dssp             SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred             CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence            58999999999753211  111223579999999999874322222     356889999999999852   02455567


Q ss_pred             CCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcCccC-CCCCCcccceecccCCcCccEeeCC
Q 040119           72 NLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKMLQN-LPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        72 ~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~l~~-lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      .+++|++|+|++|.|.     .++..+...++|+.|+|++|.+... ...++..+.     .+++|+.|+++
T Consensus       181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~-----~~~~L~~L~Ls  247 (372)
T 3un9_A          181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAR-----EHPSLELLHLY  247 (372)
T ss_dssp             TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHH-----HCSSCCEEECT
T ss_pred             cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHH-----hCCCCCEEecc
Confidence            7899999999999998     3467788889999999999985421 001122222     56778888776

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=98.15  E-value=5.1e-06  Score=78.67  Aligned_cols=101  Identities=13%  Similarity=0.085  Sum_probs=78.8

Q ss_pred             CCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCC-EEEccCCCCCccc-hhhhCCCCcc
Q 040119           24 PFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLE-ELHLSGNNFFTLP-ASIYRLSKLS  100 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~-~L~Ls~N~~~~lP-~~i~~L~~L~  100 (366)
                      +.+|+.++++.|.+...-+..|.++.+|+.|+|.+| +.  .++ ..|..+.+|+ .|+|.. +++.++ .++.++++|+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~--~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~  300 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LK--TIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLR  300 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CC--EECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cc--eehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCC
Confidence            467999999999887444456889999999999997 64  254 6689999999 999988 888776 6889999999


Q ss_pred             EEEccCCcCccCCCCCCcccceecccCCcCccEeeC
Q 040119          101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD  136 (366)
Q Consensus       101 ~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~  136 (366)
                      .|++.+|++.    .++...    +.+|++|+.+..
T Consensus       301 ~l~l~~n~i~----~I~~~a----F~~~~~L~~ly~  328 (329)
T 3sb4_A          301 YVLATGDKIT----TLGDEL----FGNGVPSKLIYK  328 (329)
T ss_dssp             EEEECSSCCC----EECTTT----TCTTCCCCEEEC
T ss_pred             EEEeCCCccC----ccchhh----hcCCcchhhhcc
Confidence            9999888733    333322    348999988864

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.05  E-value=1.3e-06  Score=81.08  Aligned_cols=89  Identities=18%  Similarity=0.215  Sum_probs=64.9

Q ss_pred             CCCCCCcEEEeecCCCCCC--CCCccCCCCCCCCEEEccCCCCCccchhhhCCC--CccEEEccCCcCccCCCCCCcccc
Q 040119           46 SGLCSLTKLDISYCDLGEG--AIPSGIGNLCSLEELHLSGNNFFTLPASIYRLS--KLSKIFLKDCKMLQNLPRLPASIH  121 (366)
Q Consensus        46 ~~L~~L~~L~Ls~n~l~~~--~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~--~L~~L~L~~n~~l~~lp~lp~~L~  121 (366)
                      .++++|+.|+|++|+|. +  .+|..+..+++|+.|+|++|.|+.+. .+..+.  +|+.|+|++|++.+.+|..+. .+
T Consensus       167 ~~l~~L~~L~Ls~N~l~-~l~~l~~~~~~l~~L~~L~Ls~N~i~~~~-~l~~l~~l~L~~L~L~~Npl~~~~~~~~~-y~  243 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKSER-ELDKIKGLKLEELWLDGNSLCDTFRDQST-YI  243 (267)
T ss_dssp             HHCTTCCEEECTTSCCC-CCGGGTTHHHHSTTCCEEECTTSCCCSGG-GGGGGTTSCCSEEECTTSTTGGGCSSHHH-HH
T ss_pred             hhCCCCCEEECCCCCCC-CCccchhHHhhCCCCCEEECCCCccCCch-hhhhcccCCcceEEccCCcCccccCcchh-HH
Confidence            46789999999999997 5  45677778999999999999999773 344444  999999999998776653321 11


Q ss_pred             eecccCCcCccEeeCC
Q 040119          122 GIFLDGCVSLETLSDG  137 (366)
Q Consensus       122 ~L~~~~c~sL~~l~~~  137 (366)
                      .-.+..+++|+.|+..
T Consensus       244 ~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          244 SAIRERFPKLLRLDGH  259 (267)
T ss_dssp             HHHHHHCTTCCEESSC
T ss_pred             HHHHHHCcccCeECCc
Confidence            1123367777777643

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.04  E-value=5e-07  Score=78.96  Aligned_cols=84  Identities=11%  Similarity=0.082  Sum_probs=36.7

Q ss_pred             CCccEEECcCC-CCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCccCCCCCCCCEEEccCCCCCc-----cch
Q 040119           25 FPINLMRWSSD-PMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNFFT-----LPA   91 (366)
Q Consensus        25 ~~L~~L~ls~n-~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~   91 (366)
                      +.|+.|++++| .+..    .+...+...++|+.|+|++|.+.+.   .+...+...++|++|+|++|.|..     +..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            33555555555 4432    1223334444555555555554310   012223333445555555555541     334


Q ss_pred             hhhCCCCccEEEc--cCCc
Q 040119           92 SIYRLSKLSKIFL--KDCK  108 (366)
Q Consensus        92 ~i~~L~~L~~L~L--~~n~  108 (366)
                      .+...+.|+.|+|  ++|.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~  134 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQP  134 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSC
T ss_pred             HHHhCCCceEEEecCCCCC
Confidence            4444455555555  4444

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=97.98  E-value=4.3e-06  Score=77.68  Aligned_cols=77  Identities=23%  Similarity=0.238  Sum_probs=61.9

Q ss_pred             CCCccEEECcCCCCCC--CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCC--CCCEEEccCCCCC-ccc-------h
Q 040119           24 PFPINLMRWSSDPMAL--SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLC--SLEELHLSGNNFF-TLP-------A   91 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~--~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~--sL~~L~Ls~N~~~-~lP-------~   91 (366)
                      ++.|+.|+|++|.+.+  .+|..+..+++|+.|+|++|+|..  + ..+..+.  +|+.|+|++|.+. .+|       .
T Consensus       169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~--~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~  245 (267)
T 3rw6_A          169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKS--E-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA  245 (267)
T ss_dssp             CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCS--G-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred             CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCC--c-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence            5679999999999986  455666789999999999999973  3 3344444  9999999999998 455       2


Q ss_pred             hhhCCCCccEEE
Q 040119           92 SIYRLSKLSKIF  103 (366)
Q Consensus        92 ~i~~L~~L~~L~  103 (366)
                      .+..+++|+.||
T Consensus       246 il~~~P~L~~LD  257 (267)
T 3rw6_A          246 IRERFPKLLRLD  257 (267)
T ss_dssp             HHHHCTTCCEES
T ss_pred             HHHHCcccCeEC
Confidence            477889999887

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=97.85  E-value=2.7e-06  Score=86.33  Aligned_cols=107  Identities=15%  Similarity=0.073  Sum_probs=67.1

Q ss_pred             CCCccEEEeeCCCCCCCCCC--cCCCCCccEEECc--C----CCCCCCCC------ccCCCCCCCcEEEeecCCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSAS--WFLPFPINLMRWS--S----DPMALSLP------SSLSGLCSLTKLDISYCDLGEGAI   66 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~--~~~~~~L~~L~ls--~----n~l~~~lP------~sl~~L~~L~~L~Ls~n~l~~~~l   66 (366)
                      +++|+.|.++.|........  ...+++|+.|+++  +    +.++ ..|      ..+..+++|+.|+|++ .+. +..
T Consensus       371 ~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~-~~~~~~~~~~l~~~~~~L~~L~L~~-~l~-~~~  447 (594)
T 2p1m_B          371 CPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLT-LEPLDIGFGAIVEHCKDLRRLSLSG-LLT-DKV  447 (594)
T ss_dssp             CTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTT-CCCTHHHHHHHHHHCTTCCEEECCS-SCC-HHH
T ss_pred             chhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCccccc-CCchhhHHHHHHhhCCCccEEeecC-ccc-HHH
Confidence            46788887776664322111  1135678888887  3    4444 222      2245677888888876 555 333


Q ss_pred             CccCCC-CCCCCEEEccCCCCCc-cchhh-hCCCCccEEEccCCcCc
Q 040119           67 PSGIGN-LCSLEELHLSGNNFFT-LPASI-YRLSKLSKIFLKDCKML  110 (366)
Q Consensus        67 P~~i~~-L~sL~~L~Ls~N~~~~-lP~~i-~~L~~L~~L~L~~n~~l  110 (366)
                      +..++. +++|+.|+|++|.++. .+..+ ..+++|+.|+|++|++.
T Consensus       448 ~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~  494 (594)
T 2p1m_B          448 FEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFG  494 (594)
T ss_dssp             HHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCC
T ss_pred             HHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCc
Confidence            444444 7788888888888862 22233 66888888888888853

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.80  E-value=0.00015  Score=71.04  Aligned_cols=101  Identities=12%  Similarity=0.213  Sum_probs=48.2

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCC-CccCCCC--------
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAI-PSGIGNL--------   73 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L--------   73 (366)
                      +|+.+.|..+-..+....+..+.+|+.+++..|.+. .+|.......+|+.+.|..+ +.  .+ ...|..+        
T Consensus       158 ~L~~i~lp~~l~~I~~~aF~~c~~L~~l~l~~n~l~-~I~~~aF~~~~L~~l~lp~~-l~--~I~~~aF~~~~~L~~l~l  233 (401)
T 4fdw_A          158 TVQEIVFPSTLEQLKEDIFYYCYNLKKADLSKTKIT-KLPASTFVYAGIEEVLLPVT-LK--EIGSQAFLKTSQLKTIEI  233 (401)
T ss_dssp             CCCEEECCTTCCEECSSTTTTCTTCCEEECTTSCCS-EECTTTTTTCCCSEEECCTT-CC--EECTTTTTTCTTCCCEEC
T ss_pred             CceEEEeCCCccEehHHHhhCcccCCeeecCCCcce-EechhhEeecccCEEEeCCc-hh--eehhhHhhCCCCCCEEec
Confidence            345555544323333344445555666666555554 33332222344555544422 22  12 2233344        


Q ss_pred             --------------CCCCEEEccCCCCCccc-hhhhCCCCccEEEccCCc
Q 040119           74 --------------CSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        74 --------------~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~  108 (366)
                                    .+|+.+.| .++++.++ .++.++++|+.+.+.+|.
T Consensus       234 ~~~l~~I~~~aF~~~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~  282 (401)
T 4fdw_A          234 PENVSTIGQEAFRESGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGST  282 (401)
T ss_dssp             CTTCCEECTTTTTTCCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSC
T ss_pred             CCCccCccccccccCCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCcc
Confidence                          44555555 23455553 356667777777776654

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.66  E-value=1.3e-05  Score=77.70  Aligned_cols=157  Identities=15%  Similarity=0.037  Sum_probs=91.2

Q ss_pred             CCCccEEEeeCCCCCC----------CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccC
Q 040119            1 MKNLKELSFRGCKGSP----------SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGI   70 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~----------~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i   70 (366)
                      +++|+.|.+.......          .......++.|+.|.+++|.-. .+|. +. +++|+.|+|..|.+. ......+
T Consensus       138 l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~~~L~~L~L~~~~l~-~~~l~~l  213 (362)
T 2ra8_A          138 FAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL-SIGK-KP-RPNLKSLEIISGGLP-DSVVEDI  213 (362)
T ss_dssp             HTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC-BCCS-CB-CTTCSEEEEECSBCC-HHHHHHH
T ss_pred             cchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc-eecc-cc-CCCCcEEEEecCCCC-hHHHHHH
Confidence            4789999997653210          0011234578999999888422 4555 43 889999999988875 2222233


Q ss_pred             C--CCCCCCEEEccC--CC------CCccchhh--hCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCC
Q 040119           71 G--NLCSLEELHLSG--NN------FFTLPASI--YRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGY  138 (366)
Q Consensus        71 ~--~L~sL~~L~Ls~--N~------~~~lP~~i--~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~  138 (366)
                      .  .+++|+.|+|+.  |.      +..+...+  ..+++|++|+|.+|.+....+   ..+.  .+..++.|++|+++ 
T Consensus       214 ~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~---~~la--~a~~~~~L~~LdLs-  287 (362)
T 2ra8_A          214 LGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVV---EMFL--ESDILPQLETMDIS-  287 (362)
T ss_dssp             HHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCTTHHHHH---HHHH--HCSSGGGCSEEECC-
T ss_pred             HHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCCCchHHH---HHHH--hCccCCCCCEEECC-
Confidence            3  688999999863  22      22222222  357899999999988653211   0111  11135677777775 


Q ss_pred             CCCcccccCCC---CCCcccccCCCCCceEEEECCCCCC
Q 040119          139 WRDCSIVVPGS---EIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       139 f~~~~~~l~g~---~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                          .+.+.+.   .++..+.+..   ++..++|..|.+
T Consensus       288 ----~n~L~d~G~~~L~~~L~~l~---~L~~L~L~~n~i  319 (362)
T 2ra8_A          288 ----AGVLTDEGARLLLDHVDKIK---HLKFINMKYNYL  319 (362)
T ss_dssp             ----SSCCBHHHHHHHHTTHHHHT---TCSEEECCSBBC
T ss_pred             ----CCCCChHHHHHHHhhcccCC---cceEEECCCCcC
Confidence                2222221   2333333334   677888888876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=97.61  E-value=0.00046  Score=67.51  Aligned_cols=123  Identities=14%  Similarity=0.126  Sum_probs=69.7

Q ss_pred             CCCccEEEeeCCCCC-CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCC----------------------CCcEEEee
Q 040119            1 MKNLKELSFRGCKGS-PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLC----------------------SLTKLDIS   57 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~-~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~----------------------~L~~L~Ls   57 (366)
                      +++|+.++|..|+.. .+...+. ...|+.+.+..+ +...-...|.+++                      +|+.+.|.
T Consensus       179 c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~~aF~~~~L~~i~lp  256 (401)
T 4fdw_A          179 CYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQEAFRESGITTVKLP  256 (401)
T ss_dssp             CTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECTTTTTTCCCSEEEEE
T ss_pred             cccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCCccCccccccccCCccEEEeC
Confidence            467888888776522 2222222 234555554422 2212223334444                      45555552


Q ss_pred             cCCCCCCCC-CccCCCCCCCCEEEccCCCCC-----ccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcC
Q 040119           58 YCDLGEGAI-PSGIGNLCSLEELHLSGNNFF-----TLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVS  130 (366)
Q Consensus        58 ~n~l~~~~l-P~~i~~L~sL~~L~Ls~N~~~-----~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~s  130 (366)
                       +++.  .+ +..|..+++|+.+.+.+|.+.     .++ .++.++++|+.+.|.++  +..|+.       --+.+|++
T Consensus       257 -~~i~--~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~~--i~~I~~-------~aF~~c~~  324 (401)
T 4fdw_A          257 -NGVT--NIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPES--IRILGQ-------GLLGGNRK  324 (401)
T ss_dssp             -TTCC--EECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCTT--CCEECT-------TTTTTCCS
T ss_pred             -CCcc--EEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCCc--eEEEhh-------hhhcCCCC
Confidence             2333  13 456888999999999988776     455 57889999999998742  222221       12346777


Q ss_pred             ccEeeCC
Q 040119          131 LETLSDG  137 (366)
Q Consensus       131 L~~l~~~  137 (366)
                      |+.+.++
T Consensus       325 L~~l~lp  331 (401)
T 4fdw_A          325 VTQLTIP  331 (401)
T ss_dssp             CCEEEEC
T ss_pred             ccEEEEC
Confidence            7776654

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.47  E-value=4.2e-05  Score=66.50  Aligned_cols=81  Identities=15%  Similarity=0.239  Sum_probs=44.0

Q ss_pred             CccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCCccCCCC----CCCCEEEccCCC-CC--ccchhhhCCC
Q 040119           26 PINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIPSGIGNL----CSLEELHLSGNN-FF--TLPASIYRLS   97 (366)
Q Consensus        26 ~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP~~i~~L----~sL~~L~Ls~N~-~~--~lP~~i~~L~   97 (366)
                      .|+.|+++++.++..--..+..+++|+.|+|++|. +++ .--..+..+    ++|++|+|++|. ++  .+ ..+..++
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD-~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl-~~L~~~~  139 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIED-GCLERLSQLENLQKSMLEMEIISCGNVTDKGI-IALHHFR  139 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCH-HHHHHHHTCHHHHHHCCEEEEESCTTCCHHHH-HHGGGCT
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCH-HHHHHHHhcccccCCCCEEEcCCCCcCCHHHH-HHHhcCC
Confidence            46666666666554333445666667777777664 331 111223332    246666666653 55  12 2455566


Q ss_pred             CccEEEccCCc
Q 040119           98 KLSKIFLKDCK  108 (366)
Q Consensus        98 ~L~~L~L~~n~  108 (366)
                      +|+.|+|++|.
T Consensus       140 ~L~~L~L~~c~  150 (176)
T 3e4g_A          140 NLKYLFLSDLP  150 (176)
T ss_dssp             TCCEEEEESCT
T ss_pred             CCCEEECCCCC
Confidence            66666666665

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=97.43  E-value=2e-05  Score=76.36  Aligned_cols=129  Identities=15%  Similarity=0.080  Sum_probs=82.0

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccC--CCCCCCcEEEeecC--CCCCCC-----CCccC-
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSL--SGLCSLTKLDISYC--DLGEGA-----IPSGI-   70 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl--~~L~~L~~L~Ls~n--~l~~~~-----lP~~i-   70 (366)
                      +|+|+.|+|++|..... +. ...++|+.|.+..+.+.......+  ..+++|+.|+|+.+  ... +.     +...+ 
T Consensus       171 ~P~L~~L~L~g~~~l~l-~~-~~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~-~~~~~~~l~~~l~  247 (362)
T 2ra8_A          171 MPLLNNLKIKGTNNLSI-GK-KPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYG-FDGDMNVFRPLFS  247 (362)
T ss_dssp             CTTCCEEEEECCBTCBC-CS-CBCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGT-CCSCGGGTGGGSC
T ss_pred             CCCCcEEEEeCCCCcee-cc-ccCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccc-cchhHHHHHHHHh
Confidence            47999999999842221 12 236789999999887754322233  37899999999642  211 11     11222 


Q ss_pred             -CCCCCCCEEEccCCCCC-ccchhhh---CCCCccEEEccCCcCccCC-CCCCcccceecccCCcCccEeeCC
Q 040119           71 -GNLCSLEELHLSGNNFF-TLPASIY---RLSKLSKIFLKDCKMLQNL-PRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        71 -~~L~sL~~L~Ls~N~~~-~lP~~i~---~L~~L~~L~L~~n~~l~~l-p~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                       ..+++|+.|+|.+|.+. ..+..+.   .+++|+.|+|+.|.+...- ..++..++     ++++|+.|+++
T Consensus       248 ~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~-----~l~~L~~L~L~  315 (362)
T 2ra8_A          248 KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD-----KIKHLKFINMK  315 (362)
T ss_dssp             TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHH-----HHTTCSEEECC
T ss_pred             cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcc-----cCCcceEEECC
Confidence             35789999999999987 2333333   5789999999998854310 01122222     56777777775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=97.34  E-value=6.5e-05  Score=65.34  Aligned_cols=107  Identities=12%  Similarity=0.066  Sum_probs=56.3

Q ss_pred             CCccEEEeeCC-CCCCC-----CCCcCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCc
Q 040119            2 KNLKELSFRGC-KGSPS-----SASWFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPS   68 (366)
Q Consensus         2 ~~L~~L~Ls~n-~~~~~-----~~~~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~   68 (366)
                      ++|++|+|++| .+...     .........|+.|+|++|.+..    .+...+...++|+.|+|++|.|.+.   .+..
T Consensus        36 ~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~  115 (185)
T 1io0_A           36 PDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVE  115 (185)
T ss_dssp             TTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHH
T ss_pred             CCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHH
Confidence            45666666666 42211     0111223456666666666642    1233344445666666666666410   0234


Q ss_pred             cCCCCCCCCEEEc--cCCCCC-----ccchhhhCCCCccEEEccCCc
Q 040119           69 GIGNLCSLEELHL--SGNNFF-----TLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        69 ~i~~L~sL~~L~L--s~N~~~-----~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      .+...++|+.|+|  ++|.|.     .+...+...+.|+.|+|++|.
T Consensus       116 ~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~  162 (185)
T 1io0_A          116 ALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQ  162 (185)
T ss_dssp             GGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSS
T ss_pred             HHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCC
Confidence            4555566666666  566665     234455555666666666665

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=97.22  E-value=0.00031  Score=60.99  Aligned_cols=70  Identities=11%  Similarity=0.114  Sum_probs=49.6

Q ss_pred             CCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCC-CCcc-chhhhCC----CCccEEEccCCcCc
Q 040119           40 SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNN-FFTL-PASIYRL----SKLSKIFLKDCKML  110 (366)
Q Consensus        40 ~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~-~~~l-P~~i~~L----~~L~~L~L~~n~~l  110 (366)
                      .+|.....-.+|+.|||++|.+++ .--..+..+++|+.|+|++|. |+.- =..|..+    ++|+.|+|++|..+
T Consensus        52 ~LP~~~~~~~~L~~LDLs~~~Itd-~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~I  127 (176)
T 3e4g_A           52 HLPTGPLDKYKIQAIDATDSCIMS-IGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNV  127 (176)
T ss_dssp             GSCCCSTTCCCEEEEEEESCCCCG-GGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTC
T ss_pred             cCCcccCCCceEeEEeCcCCCccH-HHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcC
Confidence            345433333579999999999873 323456889999999999995 6621 1245554    37999999999743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.86  E-value=0.0064  Score=58.04  Aligned_cols=59  Identities=19%  Similarity=0.190  Sum_probs=31.7

Q ss_pred             cCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEEcc
Q 040119           44 SLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIFLK  105 (366)
Q Consensus        44 sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~L~  105 (366)
                      .+.++.+|+.+.+..+ +.  .++ ..|..+.+|+.+.+.++.++.|+ .++.++.+|+.+.|.
T Consensus       258 aF~~~~~l~~i~l~~~-i~--~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp  318 (379)
T 4h09_A          258 LLQNCTALKTLNFYAK-VK--TVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLP  318 (379)
T ss_dssp             TTTTCTTCCEEEECCC-CS--EECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECC
T ss_pred             ccceeehhcccccccc-ce--eccccccccccccccccccccccceehhhhhcCCCCCCEEEcC
Confidence            3445555555555432 22  132 34555666666666666666554 355566666666653

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.73  E-value=0.003  Score=51.67  Aligned_cols=34  Identities=32%  Similarity=0.405  Sum_probs=16.8

Q ss_pred             CCCEEEccCCCCCccch-hhhCCCCccEEEccCCc
Q 040119           75 SLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        75 sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~  108 (366)
                      +|+.|+|++|+|+.||. .+..+++|+.|+|.+|+
T Consensus        32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP   66 (130)
T 3rfe_A           32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP   66 (130)
T ss_dssp             TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred             CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence            34555555555555543 23445555555555554

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=96.54  E-value=0.0083  Score=57.27  Aligned_cols=99  Identities=16%  Similarity=0.112  Sum_probs=65.7

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCC-CccCCCCCCCCEEEc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAI-PSGIGNLCSLEELHL   81 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~l-P~~i~~L~sL~~L~L   81 (366)
                      +|+.+.+..+-.......+.....|+.+.+..+ +...-...|.++.+|+.+.+.++.+..  + ...|..+.+|+.+.|
T Consensus       241 ~L~~i~lp~~v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~--I~~~aF~~c~~L~~i~l  317 (379)
T 4h09_A          241 ALDEIAIPKNVTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIET--LEPRVFMDCVKLSSVTL  317 (379)
T ss_dssp             SCCEEEECTTCCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCE--ECTTTTTTCTTCCEEEC
T ss_pred             cceEEEcCCCccEeCccccceeehhcccccccc-ceeccccccccccccccccccccccce--ehhhhhcCCCCCCEEEc
Confidence            455555544432233334445556777776543 332333457889999999999988853  5 467889999999999


Q ss_pred             cCCCCCccch-hhhCCCCccEEEcc
Q 040119           82 SGNNFFTLPA-SIYRLSKLSKIFLK  105 (366)
Q Consensus        82 s~N~~~~lP~-~i~~L~~L~~L~L~  105 (366)
                      .. +++.|+. ++.++++|+.+.+.
T Consensus       318 p~-~l~~I~~~aF~~C~~L~~i~ip  341 (379)
T 4h09_A          318 PT-ALKTIQVYAFKNCKALSTISYP  341 (379)
T ss_dssp             CT-TCCEECTTTTTTCTTCCCCCCC
T ss_pred             Cc-cccEEHHHHhhCCCCCCEEEEC
Confidence            64 4777764 67788888776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=96.32  E-value=0.017  Score=55.68  Aligned_cols=104  Identities=11%  Similarity=0.176  Sum_probs=68.1

Q ss_pred             CcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCC
Q 040119           20 SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLS   97 (366)
Q Consensus        20 ~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~   97 (366)
                      .+.....|+.+.+..+... .-...+.++..|+.+.+.. .+.  .++ ..|..+.+|+.+.|.. +++.|. .++.+++
T Consensus       260 aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~~-~i~--~I~~~aF~~c~~L~~i~lp~-~v~~I~~~aF~~C~  334 (394)
T 4gt6_A          260 AFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFSS-RIT--ELPESVFAGCISLKSIDIPE-GITQILDDAFAGCE  334 (394)
T ss_dssp             TTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECCT-TCC--EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCT
T ss_pred             eeeecccccEEecccccce-ecCcccccccccccccCCC-ccc--ccCceeecCCCCcCEEEeCC-cccEehHhHhhCCC
Confidence            4455566777777655432 3345577788888888863 443  254 4577888888888874 477665 4678888


Q ss_pred             CccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           98 KLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        98 ~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|+.+.+..+  +.       .+..--+.+|++|+.+.+.
T Consensus       335 ~L~~i~ip~s--v~-------~I~~~aF~~C~~L~~i~~~  365 (394)
T 4gt6_A          335 QLERIAIPSS--VT-------KIPESAFSNCTALNNIEYS  365 (394)
T ss_dssp             TCCEEEECTT--CC-------BCCGGGGTTCTTCCEEEES
T ss_pred             CCCEEEECcc--cC-------EEhHhHhhCCCCCCEEEEC
Confidence            8888887543  11       2222234588888888776

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.08  E-value=0.023  Score=54.66  Aligned_cols=97  Identities=11%  Similarity=0.033  Sum_probs=48.1

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|+.+.+...........+.....|+.+.+..+... .-...+..+..|+.+.+....+.    ...+..+.+|+.+.+.
T Consensus       231 ~l~~i~ip~~~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~----~~~F~~~~~L~~i~l~  305 (394)
T 4fs7_A          231 GVKNIIIPDSFTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP----EKTFYGCSSLTEVKLL  305 (394)
T ss_dssp             CCCEEEECTTCCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC----TTTTTTCTTCCEEEEC
T ss_pred             CCceEEECCCceecccccccccccceeEEcCCCcce-eeccccccccccceeccCceeec----cccccccccccccccc
Confidence            456666654433333344455556666666555432 33344555555665555443321    1234455555555554


Q ss_pred             CCCCCccc-hhhhCCCCccEEEcc
Q 040119           83 GNNFFTLP-ASIYRLSKLSKIFLK  105 (366)
Q Consensus        83 ~N~~~~lP-~~i~~L~~L~~L~L~  105 (366)
                      . +++.++ .++.++++|+.+++.
T Consensus       306 ~-~i~~I~~~aF~~c~~L~~i~lp  328 (394)
T 4fs7_A          306 D-SVKFIGEEAFESCTSLVSIDLP  328 (394)
T ss_dssp             T-TCCEECTTTTTTCTTCCEECCC
T ss_pred             c-ccceechhhhcCCCCCCEEEeC
Confidence            3 244443 245555555555543

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=96.01  E-value=0.036  Score=53.24  Aligned_cols=76  Identities=18%  Similarity=0.119  Sum_probs=45.6

Q ss_pred             CCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEE
Q 040119           25 FPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIF  103 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~  103 (366)
                      ..|+.+.+..+. ...-...+..+..|+.+.+..+...  .-...+.....|+.+.+..+.   +| ..+..+.+|+.+.
T Consensus       230 ~~l~~i~ip~~~-~~i~~~~f~~~~~l~~~~~~~~~~~--i~~~~F~~~~~l~~~~~~~~~---i~~~~F~~~~~L~~i~  303 (394)
T 4fs7_A          230 TGVKNIIIPDSF-TELGKSVFYGCTDLESISIQNNKLR--IGGSLFYNCSGLKKVIYGSVI---VPEKTFYGCSSLTEVK  303 (394)
T ss_dssp             CCCCEEEECTTC-CEECSSTTTTCSSCCEEEECCTTCE--ECSCTTTTCTTCCEEEECSSE---ECTTTTTTCTTCCEEE
T ss_pred             CCCceEEECCCc-eecccccccccccceeEEcCCCcce--eeccccccccccceeccCcee---eccccccccccccccc
Confidence            446666654332 2122345667778888888776542  234566777778877765542   33 3566777787777


Q ss_pred             ccC
Q 040119          104 LKD  106 (366)
Q Consensus       104 L~~  106 (366)
                      +.+
T Consensus       304 l~~  306 (394)
T 4fs7_A          304 LLD  306 (394)
T ss_dssp             ECT
T ss_pred             ccc
Confidence            654

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=95.59  E-value=0.022  Score=46.44  Aligned_cols=56  Identities=23%  Similarity=0.358  Sum_probs=43.5

Q ss_pred             cEEECcCCCCC-CCCCccCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccCCCCC
Q 040119           28 NLMRWSSDPMA-LSLPSSLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSGNNFF   87 (366)
Q Consensus        28 ~~L~ls~n~l~-~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~N~~~   87 (366)
                      ..++.+++.+. ..+|..+.  .+|+.|+|++|+|+.  +| ..|..+++|+.|+|++|.+.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~--l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTA--LPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSS--CCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCc--cChhhhhhccccCEEEecCCCee
Confidence            36778888874 26775432  469999999999974  65 45788999999999999886

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=94.72  E-value=0.15  Score=48.75  Aligned_cols=84  Identities=15%  Similarity=0.207  Sum_probs=59.4

Q ss_pred             CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCccc
Q 040119           42 PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASI  120 (366)
Q Consensus        42 P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L  120 (366)
                      ...|.++..|+.+.+..+...  .-...|..+.+|+.+.+. +.++.++. ++.++.+|+.+.|..+  +.       .+
T Consensus       258 ~~aF~~c~~L~~i~lp~~~~~--I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~--v~-------~I  325 (394)
T 4gt6_A          258 THAFDSCAYLASVKMPDSVVS--IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG--IT-------QI  325 (394)
T ss_dssp             TTTTTTCSSCCEEECCTTCCE--ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CC-------EE
T ss_pred             cceeeecccccEEecccccce--ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc--cc-------Ee
Confidence            345778889999998765442  124567888999999996 66777874 6888999999988643  11       12


Q ss_pred             ceecccCCcCccEeeCC
Q 040119          121 HGIFLDGCVSLETLSDG  137 (366)
Q Consensus       121 ~~L~~~~c~sL~~l~~~  137 (366)
                      ..--+.+|++|+.+.++
T Consensus       326 ~~~aF~~C~~L~~i~ip  342 (394)
T 4gt6_A          326 LDDAFAGCEQLERIAIP  342 (394)
T ss_dssp             CTTTTTTCTTCCEEEEC
T ss_pred             hHhHhhCCCCCCEEEEC
Confidence            22234589999988876

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.44  E-value=0.0099  Score=52.35  Aligned_cols=84  Identities=12%  Similarity=0.083  Sum_probs=52.4

Q ss_pred             CCccEEECcCC-CCCC----CCCccCCCCCCCcEEEeecCCCCC---CCCCccCCCCCCCCEEEccCCCCC-----ccch
Q 040119           25 FPINLMRWSSD-PMAL----SLPSSLSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNFF-----TLPA   91 (366)
Q Consensus        25 ~~L~~L~ls~n-~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~---~~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~   91 (366)
                      ..|+.|+|++| .+..    .+-..+..-+.|+.|+|++|.+.+   ..+-..+..-++|+.|+|+.|.|.     .|-.
T Consensus        41 ~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~  120 (197)
T 1pgv_A           41 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR  120 (197)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHH
Confidence            45777777774 5542    233345555678888888888752   012233444567888888888887     3444


Q ss_pred             hhhCCCCccEEEccCCc
Q 040119           92 SIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        92 ~i~~L~~L~~L~L~~n~  108 (366)
                      .+..=+.|+.|+|++|.
T Consensus       121 aL~~N~tL~~L~L~n~~  137 (197)
T 1pgv_A          121 STLVTQSIVEFKADNQR  137 (197)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHhhCCceeEEECCCCc
Confidence            55555668888887653

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=94.14  E-value=0.014  Score=51.28  Aligned_cols=64  Identities=13%  Similarity=0.119  Sum_probs=39.1

Q ss_pred             CCCCCCcEEEeecC-CCCCC---CCCccCCCCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEccCCcC
Q 040119           46 SGLCSLTKLDISYC-DLGEG---AIPSGIGNLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        46 ~~L~~L~~L~Ls~n-~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      .+-+.|+.|+|++| .|.+.   .+-..+..-++|+.|+|++|.|.     .|-..+..=+.|+.|+|+.|.+
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~I  110 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFL  110 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcC
Confidence            44556777777764 55310   12234455567777777777776     3445555556777777777774

>3ukw_C Bimax1 peptide; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding, protein transport-IN complex; HET: BTB; 2.10A {Mus musculus}

Probab=85.30  E-value=0.2  Score=28.17  Aligned_cols=13  Identities=62%  Similarity=0.938  Sum_probs=10.7

Q ss_pred             CCCCCCchhhhcc
Q 040119          352 NDDEEPQPKRFRL  364 (366)
Q Consensus       352 ~~~~~~~~~r~~~  364 (366)
                      |++|||++||-|+
T Consensus        15 dedeepprkrkrl   27 (28)
T 3ukw_C           15 DEDEEPPRKRKRL   27 (28)
T ss_dssp             CGGGSCCSSCCCC
T ss_pred             ccccCcchhhhcc
Confidence            5679999999875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	366
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-07
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	5e-05
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	3e-04
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	0.002
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	5e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.001
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-06
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	1e-04
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	0.004
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	7e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	8e-05
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	2e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-04
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	0.003
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	3e-04
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	5e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.003

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 48.5 bits (114), Expect = 6e-07
 Identities = 15/68 (22%), Positives = 31/68 (45%), Gaps = 4/68 (5%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           +S  S +S L  L +L  +   + +    S + NL ++  L    N    L   +  L++
Sbjct: 319 ISDISPVSSLTKLQRLFFANNKVSD---VSSLANLTNINWLSAGHNQISDLTP-LANLTR 374

Query: 99  LSKIFLKD 106
           ++++ L D
Sbjct: 375 ITQLGLND 382

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 42.3 bits (98), Expect = 5e-05
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 3/46 (6%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN 84
           +S  SSL+ L ++  L   +  +     P  + NL  + +L L+  
Sbjct: 341 VSDVSSLANLTNINWLSAGHNQI-SDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 40.0 bits (92), Expect = 3e-04
 Identities = 13/71 (18%), Positives = 30/71 (42%), Gaps = 4/71 (5%)

Query: 39  LSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSK 98
           ++   S + L  +T L      +       G+  L +L +++ S N    +   +  L+K
Sbjct: 34  VTDTVSQTDLDQVTTLQADRLGIKS---IDGVEYLNNLTQINFSNNQLTDITP-LKNLTK 89

Query: 99  LSKIFLKDCKM 109
           L  I + + ++
Sbjct: 90  LVDILMNNNQI 100

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.7 bits (86), Expect = 0.002
 Identities = 34/140 (24%), Positives = 50/140 (35%), Gaps = 28/140 (20%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           + NL ELS  G +         L    NL         +S  + LSGL  LT+L +    
Sbjct: 218 LTNLDELSLNGNQLKDIGTLASLT---NLTDLDLANNQISNLAPLSGLTKLTELKLGANQ 274

Query: 61  LGE-------------------GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
           +                         S I NL +L  L L  NN   +   +  L+KL +
Sbjct: 275 ISNISPLAGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDIS-PVSSLTKLQR 333

Query: 102 IFLKDCKM-----LQNLPRL 116
           +F  + K+     L NL  +
Sbjct: 334 LFFANNKVSDVSSLANLTNI 353

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 17/99 (17%), Positives = 34/99 (34%), Gaps = 2/99 (2%)

Query: 1   MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD 60
           +  +  L     +      +  L     L    +   AL     ++ L  L +L +    
Sbjct: 19  LLLVTHLDLSHNRLRALPPA--LAALRCLEVLQASDNALENVDGVANLPRLQELLLCNNR 76

Query: 61  LGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKL 99
           L + A    + +   L  L+L GN+         RL+++
Sbjct: 77  LQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.7 bits (109), Expect = 2e-06
 Identities = 20/107 (18%), Positives = 42/107 (39%), Gaps = 9/107 (8%)

Query: 20  SWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL 79
            +     +    +  +  +  + S      SL +L++S   L E  +P+    L   E L
Sbjct: 255 IFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE--LPALPPRL---ERL 309

Query: 80  HLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLD 126
             S N+   +P     L +L    ++    L+  P +P S+  + ++
Sbjct: 310 IASFNHLAEVPELPQNLKQLH---VEYNP-LREFPDIPESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.0 bits (89), Expect = 5e-04
 Identities = 14/68 (20%), Positives = 22/68 (32%), Gaps = 5/68 (7%)

Query: 50  SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKM 109
              +L+++   L    +P    +L   E L  S N+   LP     L  L         +
Sbjct: 39  QAHELELNNLGLSS--LPELPPHL---ESLVASCNSLTELPELPQSLKSLLVDNNNLKAL 93

Query: 110 LQNLPRLP 117
               P L 
Sbjct: 94  SDLPPLLE 101

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.3 bits (87), Expect = 0.001
 Identities = 19/65 (29%), Positives = 28/65 (43%), Gaps = 5/65 (7%)

Query: 72  NLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSL 131
              SLEEL++S N    LPA   RL +L          L  +P LP ++  + ++    L
Sbjct: 282 LPPSLEELNVSNNKLIELPALPPRLERLI---ASFNH-LAEVPELPQNLKQLHVEYN-PL 336

Query: 132 ETLSD 136
               D
Sbjct: 337 REFPD 341

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 45.1 bits (105), Expect = 6e-06
 Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 2/49 (4%)

Query: 40  SLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFT 88
           +LP  L+ L  L  L++S+ +L  G IP G GNL   +    + N    
Sbjct: 259 TLPQGLTQLKFLHSLNVSFNNL-CGEIPQG-GNLQRFDVSAYANNKCLC 305

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 16/55 (29%), Positives = 22/55 (40%), Gaps = 1/55 (1%)

Query: 64  GAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPA 118
           G +P G+  L  L  L++S NN          L +       + K L   P LPA
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP-LPA 311

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 36.7 bits (83), Expect = 0.004
 Identities = 21/167 (12%), Positives = 42/167 (25%), Gaps = 4/167 (2%)

Query: 43  SSLSGLCSLTKLDISYCDL-GEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK 101
            + +    +  LD+S  +L     IPS + NL  L  L++ G N           +    
Sbjct: 44  DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV---GPIPPAIAKL 100

Query: 102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNE 161
             L    +               +   V+L+   +         +          +  N 
Sbjct: 101 TQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNR 160

Query: 162 GSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHM 208
            S     +     K    +  +   +      +    N    D    
Sbjct: 161 ISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRN 207

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.7 bits (104), Expect = 7e-06
 Identities = 27/218 (12%), Positives = 48/218 (22%), Gaps = 2/218 (0%)

Query: 7   LSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAI 66
           L   G    P      L   +   R     M   L    S    +  +D+S   +    +
Sbjct: 5   LDLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEHFS-PFRVQHMDLSNSVIEVSTL 63

Query: 67  PSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFL 125
              +     L+ L L G      +  ++ + S L ++ L  C                 L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 126 DGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMC 185
           D                  V   SE            +           +   LV   + 
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 186 CVFRVPKYSLPYYNRWSPDPVHMLSIYSKPTTSGFSGF 223
               +       + + +      LS             
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLEL 221

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.2 bits (100), Expect = 2e-05
 Identities = 15/96 (15%), Positives = 29/96 (30%), Gaps = 6/96 (6%)

Query: 21  WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80
                      +       +LP  L       +      +         +  L +L+ L 
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 81  LSGNNFFTLPASIYRLSKLSKIFLK------DCKML 110
           L  N+ +T+P   +    L   FL       +C++L
Sbjct: 179 LQENSLYTIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 41.8 bits (96), Expect = 8e-05
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 4/68 (5%)

Query: 36  PMALSLPSSLSGLCSLTKLDISYCDLGE---GAIPSGI-GNLCSLEELHLSGNNFFTLPA 91
             A+    S      L  L + Y ++       + + I   +  L  L L+GN F     
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319

Query: 92  SIYRLSKL 99
            +  + ++
Sbjct: 320 VVDEIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 14/112 (12%), Positives = 31/112 (27%), Gaps = 3/112 (2%)

Query: 34  SDPMALSLPSSLSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNFFTLP 90
           +     S+ + L    S+ ++ +S   +G      +   I +   LE    S      + 
Sbjct: 16  TTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVK 75

Query: 91  ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDC 142
             I    +L    L  C  L  +     +      +  +   +         
Sbjct: 76  DEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLY 127

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.2 bits (84), Expect = 0.002
 Identities = 17/162 (10%), Positives = 37/162 (22%), Gaps = 10/162 (6%)

Query: 50  SLTKLDISYCDLGE---GAIPSGIGNLCSLEELHLSGNNF-----FTLPASIYRLSKLSK 101
           S+    +    +      ++ + +    S++E+ LSGN         L  +I     L  
Sbjct: 4   SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 63

Query: 102 IFLKDCKMLQNLPRLPASIHGIF--LDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN 159
               D    +    +P ++  +   L  C  L T+                         
Sbjct: 64  AEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPL 123

Query: 160 NEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRW 201
                      P+           +    +            
Sbjct: 124 EHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIIC 165

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 40.4 bits (93), Expect = 2e-04
 Identities = 35/233 (15%), Positives = 63/233 (27%), Gaps = 24/233 (10%)

Query: 42  PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIY------- 94
                 L +L  L +    +     P     L  LE L+LS N    LP  +        
Sbjct: 48  DGDFKNLKNLHTLILINNKI-SKISPGAFAPLVKLERLYLSKNQLKELPEKMPKTLQELR 106

Query: 95  ----RLSKLSKIFLKDCK--MLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPG 148
                ++K+ K         ++  L   P    GI       ++ LS     D +I    
Sbjct: 107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIP 166

Query: 149 SEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHM 208
             +P      + +G+ IT          + L              S    +      +  
Sbjct: 167 QGLPPSLTELHLDGNKITKVDAASLKGLNNL---------AKLGLSFNSISAVDNGSLAN 217

Query: 209 LSIYSKPTTSGFSGFEFRKQIGQAMS-DHLFLYYQNRGAISEVEFSSPSGLEL 260
                +   +     +    +        ++L+  N  AI   +F  P     
Sbjct: 218 TPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTK 270

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 36.6 bits (83), Expect = 0.003
 Identities = 20/139 (14%), Positives = 37/139 (26%), Gaps = 13/139 (9%)

Query: 49  CSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDC 107
           C L  +  S   L +  +P  +        L L  N    +       L  L  + L + 
Sbjct: 10  CHLRVVQCSDLGLEK--VPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINN 65

Query: 108 KMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSSITI 167
           K+ +  P              V LE L     +   +     +  +      NE + +  
Sbjct: 66  KISKISPG--------AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRK 117

Query: 168 STPPKTYKNHKLVGYAMCC 186
           S      +   +       
Sbjct: 118 SVFNGLNQMIVVELGTNPL 136

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 3e-04
 Identities = 9/85 (10%), Positives = 30/85 (35%), Gaps = 5/85 (5%)

Query: 30  MRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTL 89
           ++ +++   +   +  +      +LD+    +    I +    L   + +  S N    L
Sbjct: 1   VKLTAE--LIEQAAQYTNAVRDRELDLRGYKIPV--IENLGATLDQFDAIDFSDNEIRKL 56

Query: 90  PASIYRLSKLSKIFLKDCKMLQNLP 114
                 L +L  + + + ++ +   
Sbjct: 57  D-GFPLLRRLKTLLVNNNRICRIGE 80

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.5 bits (83), Expect = 0.002
 Identities = 18/131 (13%), Positives = 33/131 (25%), Gaps = 14/131 (10%)

Query: 72  NLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSL 131
           N     EL L G     +      L +   I   D ++               LDG   L
Sbjct: 16  NAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI-------------RKLDGFPLL 62

Query: 132 ETLS-DGYWRDCSIVVPGSEIPEWFEYQNNEGSSITISTPPKTYKNHKLVGYAMCCVFRV 190
             L       +    +         +      ++ ++           L      C+ R 
Sbjct: 63  RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 122

Query: 191 PKYSLPYYNRW 201
           P  +  +Y  +
Sbjct: 123 PVTNKKHYRLY 133

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 5e-04
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 8/96 (8%)

Query: 21  WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGE---GAIPSGIGNLCSLE 77
           + L   I+  R     +             L  L ++ CD+ +    ++ + +    SL 
Sbjct: 341 FLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 400

Query: 78  ELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNL 113
           EL LS N           + +L +   +   +L+ L
Sbjct: 401 ELDLSNNCL-----GDAGILQLVESVRQPGCLLEQL 431

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.001
 Identities = 14/95 (14%), Positives = 36/95 (37%), Gaps = 10/95 (10%)

Query: 3  NLKELSFRGCKGSPSSASWFLPFPINLMRWS------SDPMALSLPSSLSGLCSLTKLDI 56
          +++ L  +  + S +  +  LP               ++     + S+L    +L +L++
Sbjct: 3  DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 57 SYCDLGEG---AIPSGIG-NLCSLEELHLSGNNFF 87
             +LG+     +  G+    C +++L L      
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.001
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 4/57 (7%)

Query: 34  SDPMALSLPSSLSGLCSLTKLDISYCDLGE---GAIPSGI-GNLCSLEELHLSGNNF 86
           SD    SL ++L    SL +LD+S   LG+     +   +    C LE+L L    +
Sbjct: 382 SDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYW 438

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.0 bits (86), Expect = 0.002
 Identities = 14/164 (8%), Positives = 38/164 (23%), Gaps = 8/164 (4%)

Query: 50  SLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNF-----FTLPASIYRLSKLSKIFL 104
            +  LDI   +L +      +  L   + + L            + +++     L+++ L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 105 KDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNEGSS 164
           +  ++          +          ++ LS                         E   
Sbjct: 63  RSNEL---GDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHL 119

Query: 165 ITISTPPKTYKNHKLVGYAMCCVFRVPKYSLPYYNRWSPDPVHM 208
                     +          C     +      +  S +P+  
Sbjct: 120 SDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 163

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.5 bits (83), Expect = 0.003
 Identities = 20/86 (23%), Positives = 33/86 (38%), Gaps = 4/86 (4%)

Query: 21  WFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH 80
             L    NL   S     +S  + L+ L  LT L      + +    S + +L +L E+H
Sbjct: 145 SPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD---ISPLASLPNLIEVH 201

Query: 81  LSGNNFFTLPASIYRLSKLSKIFLKD 106
           L  N    +   +   S L  + L +
Sbjct: 202 LKNNQISDVS-PLANTSNLFIVTLTN 226

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	366
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.48
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.46
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.41
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.37
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.37
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.34
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.29
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.23
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.23
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.22
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.21
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.2
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.2
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.14
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.13
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.12
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.09
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.07
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.04
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.03
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.91
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.83
d2ifga3	156	High affinity nerve growth factor receptor, N-term	98.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.73
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	98.69
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	98.62
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	98.59
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.43
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	98.08
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.94
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.88
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.8
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	97.45
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.42
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	97.33
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.71
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	96.18
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	95.36
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	93.07

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.48  E-value=2.1e-14  Score=133.57  Aligned_cols=112  Identities=23%  Similarity=0.317  Sum_probs=92.0

Q ss_pred             CccEEEeeCCCCCCC--C-CCcCCCCCccEEECcC-CCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            3 NLKELSFRGCKGSPS--S-ASWFLPFPINLMRWSS-DPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~--~-~~~~~~~~L~~L~ls~-n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +++.|+|++|.....  . .....++.|++|++++ |.+.|.+|.+|++|++|++|+|++|++. +..|..+..+.+|+.
T Consensus        51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~-~~~~~~~~~~~~L~~  129 (313)
T d1ogqa_          51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS-GAIPDFLSQIKTLVT  129 (313)
T ss_dssp             CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCE-EECCGGGGGCTTCCE
T ss_pred             EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhcccccc-ccccccccchhhhcc
Confidence            478899999875532  2 3345567899999986 7888899999999999999999999998 677777888888999


Q ss_pred             EEccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCC
Q 040119           79 LHLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPR  115 (366)
Q Consensus        79 L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~  115 (366)
                      +++++|.+. .+|..+.++++|+.+++++|.+.+.+|.
T Consensus       130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~  167 (313)
T d1ogqa_         130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPD  167 (313)
T ss_dssp             EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCG
T ss_pred             cccccccccccCchhhccCcccceeecccccccccccc
Confidence            999888876 6788888999999999998888777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=1.3e-13  Score=111.96  Aligned_cols=108  Identities=19%  Similarity=0.217  Sum_probs=88.5

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN   84 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N   84 (366)
                      |+|+|++|.+.... ....+..|+.|++++|.+. .+|..+..+++|+.|++++|.+..  +| .++.+++|+.|++++|
T Consensus         1 R~L~Ls~n~l~~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLTVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN--VD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCSSCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC--CG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCCCCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc--cC-ccccccccCeEECCCC
Confidence            57999999866443 3556678999999999997 788889999999999999999964  65 5889999999999999


Q ss_pred             CCCccc--hhhhCCCCccEEEccCCcCccCCCCCCc
Q 040119           85 NFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPA  118 (366)
Q Consensus        85 ~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~  118 (366)
                      .|+.+|  ..+..+++|+.|++++|++.. ++..+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~~-~~~~~~  110 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLCQ-EEGIQE  110 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGGG-SSSCTT
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCCc-CccHHH
Confidence            999776  468889999999999998553 444443

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.8e-12  Score=118.01  Aligned_cols=105  Identities=22%  Similarity=0.210  Sum_probs=76.6

Q ss_pred             CCccEEEeeCCCCCC-CCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSP-SSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|++.. +...+..+++|+.|++++|.+. .+|. +..+++|+.|+|++|++..  +|..+..+++|+.|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~~-~~~l~~L~~L~Ls~N~l~~--~~~~~~~l~~L~~L~  106 (266)
T d1p9ag_          31 KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQV-DGTLPVLGTLDLSHNQLQS--LPLLGQTLPALTVLD  106 (266)
T ss_dssp             TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEEC-CSCCTTCCEEECCSSCCSS--CCCCTTTCTTCCEEE
T ss_pred             cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-cccc-ccccccccccccccccccc--ccccccccccccccc
Confidence            468888888887543 3344566777888888888886 5654 5778888888888888853  677778888888888


Q ss_pred             ccCCCCCccc-hhhhCCCCccEEEccCCcCc
Q 040119           81 LSGNNFFTLP-ASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        81 Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++|.+..++ ..+..+.+|+.|++++|.+.
T Consensus       107 l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~  137 (266)
T d1p9ag_         107 VSFNRLTSLPLGALRGLGELQELYLKGNELK  137 (266)
T ss_dssp             CCSSCCCCCCSSTTTTCTTCCEEECTTSCCC
T ss_pred             ccccccceeeccccccccccccccccccccc
Confidence            8888777654 35566777777777777644

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.37  E-value=1e-12  Score=113.94  Aligned_cols=123  Identities=17%  Similarity=0.180  Sum_probs=85.7

Q ss_pred             ccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCC-CccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            4 LKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSL-PSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         4 L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~l-P~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      .++++.+++....- |.. ....++.|+|++|.+...+ +..|.++++|+.|+|++|++. +..+..+..+++|++|+|+
T Consensus        10 ~~~v~Cs~~~L~~i-P~~-lp~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~-~~~~~~~~~~~~L~~L~Ls   86 (192)
T d1w8aa_          10 GTTVDCTGRGLKEI-PRD-IPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCSSC-CSC-CCTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC-CBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEEeCCCcCcc-CCC-CCCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccc-cccccccccccccceeeec
Confidence            35677777763321 211 2356888888888886534 455678888888888888887 6667788888888888888


Q ss_pred             CCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           83 GNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        83 ~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +|+|+.+|. .+.++++|+.|+|++|++.. +|.  ..+.     ++++|+++++.
T Consensus        87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~-i~~--~~f~-----~l~~L~~l~L~  134 (192)
T d1w8aa_          87 ENKIKEISNKMFLGLHQLKTLNLYDNQISC-VMP--GSFE-----HLNSLTSLNLA  134 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCE-ECT--TSST-----TCTTCCEEECT
T ss_pred             cccccccCHHHHhCCCcccccccCCccccc-cCH--HHhc-----CCccccccccc
Confidence            888887764 57788888888888888543 221  1122     55667777665

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=3.5e-13  Score=114.36  Aligned_cols=126  Identities=17%  Similarity=0.140  Sum_probs=95.5

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCcc-CCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSG-IGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~-i~~L~sL~~L~   80 (366)
                      .+|+.|+|++|++.........+..|+.|++++|.+. .++. +..+++|+.|+|++|.+..  +|.. +..+++|+.|+
T Consensus        18 ~~lr~L~L~~n~I~~i~~~~~~l~~L~~L~Ls~N~i~-~l~~-~~~l~~L~~L~ls~N~i~~--l~~~~~~~l~~L~~L~   93 (162)
T d1a9na_          18 VRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR-KLDG-FPLLRRLKTLLVNNNRICR--IGEGLDQALPDLTELI   93 (162)
T ss_dssp             TSCEEEECTTSCCCSCCCGGGGTTCCSEEECCSSCCC-EECC-CCCCSSCCEEECCSSCCCE--ECSCHHHHCTTCCEEE
T ss_pred             CcCcEEECCCCCCCccCccccccccCCEEECCCCCCC-ccCC-cccCcchhhhhcccccccC--CCccccccccccccce
Confidence            4688999999986655444556778999999999997 6654 8899999999999999963  6654 46789999999


Q ss_pred             ccCCCCCccch--hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeC
Q 040119           81 LSGNNFFTLPA--SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSD  136 (366)
Q Consensus        81 Ls~N~~~~lP~--~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~  136 (366)
                      |++|.|+.++.  .+..+++|+.|++++|++.. +|..    +.-.+..+++|+.|+.
T Consensus        94 L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~-~~~~----r~~~i~~lp~L~~LD~  146 (162)
T d1a9na_          94 LTNNSLVELGDLDPLASLKSLTYLCILRNPVTN-KKHY----RLYVIYKVPQVRVLDF  146 (162)
T ss_dssp             CCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG-STTH----HHHHHHHCTTCSEETT
T ss_pred             eccccccccccccccccccccchhhcCCCcccc-ccch----HHHHHHHCCCcCeeCC
Confidence            99999998874  68889999999999998542 3321    1111336677777764

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=8.5e-12  Score=113.37  Aligned_cols=153  Identities=22%  Similarity=0.183  Sum_probs=122.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|++|+|++|++.. .+....+++|+.|++++|.+. ..|..+..+++|+.|+|++|.+. +..+..+..+.+|+.|+
T Consensus        54 l~~L~~L~L~~N~l~~-l~~~~~l~~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~-~~~~~~~~~l~~l~~L~  130 (266)
T d1p9ag_          54 YTRLTQLNLDRAELTK-LQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLPLGALRGLGELQELY  130 (266)
T ss_dssp             CTTCCEEECTTSCCCE-EECCSCCTTCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCC-CCCSSTTTTCTTCCEEE
T ss_pred             cccccccccccccccc-ccccccccccccccccccccc-ccccccccccccccccccccccc-eeecccccccccccccc
Confidence            5789999999998553 234466788999999999997 67778999999999999999997 55567788999999999


Q ss_pred             ccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCC
Q 040119           81 LSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQN  159 (366)
Q Consensus        81 Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~  159 (366)
                      +++|.++.+|. .+..+++|+.|++++|++.+..+   ..+.     ++++|+.|+++     .+.+.  .||+.+....
T Consensus       131 l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~~---~~~~-----~l~~L~~L~Ls-----~N~L~--~lp~~~~~~~  195 (266)
T d1p9ag_         131 LKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPA---GLLN-----GLENLDTLLLQ-----ENSLY--TIPKGFFGSH  195 (266)
T ss_dssp             CTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCT---TTTT-----TCTTCCEEECC-----SSCCC--CCCTTTTTTC
T ss_pred             ccccccceeccccccccccchhcccccccccccCc---cccc-----cccccceeecc-----cCCCc--ccChhHCCCC
Confidence            99999998875 46678999999999998654222   1233     67788888887     55554  5888776655


Q ss_pred             CCCceEEEECCCCCC
Q 040119          160 NEGSSITISTPPKTY  174 (366)
Q Consensus       160 ~~g~~~~l~L~~n~~  174 (366)
                         ++..++|..|.+
T Consensus       196 ---~L~~L~L~~Np~  207 (266)
T d1p9ag_         196 ---LLPFAFLHGNPW  207 (266)
T ss_dssp             ---CCSEEECCSCCB
T ss_pred             ---CCCEEEecCCCC
Confidence               678899999877

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.29  E-value=6.9e-12  Score=101.45  Aligned_cols=98  Identities=22%  Similarity=0.341  Sum_probs=83.8

Q ss_pred             cEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCC
Q 040119           28 NLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDC  107 (366)
Q Consensus        28 ~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n  107 (366)
                      ++|++++|.++ .+|. +..+++|+.|+|++|.+.+  +|..++.+++|+.|++++|.|+.+| .+.++++|+.|++++|
T Consensus         1 R~L~Ls~n~l~-~l~~-l~~l~~L~~L~ls~N~l~~--lp~~~~~l~~L~~L~l~~N~i~~l~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLCH-LEQLLLVTHLDLSHNRLRA--LPPALAALRCLEVLQASDNALENVD-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCCC-GGGGTTCCEEECCSSCCCC--CCGGGGGCTTCCEEECCSSCCCCCG-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCcc-cccCCCCCEEECCCCccCc--chhhhhhhhcccccccccccccccC-ccccccccCeEECCCC
Confidence            57999999997 7775 8999999999999999965  9999999999999999999999998 5999999999999999


Q ss_pred             cCccCCCCCCcccceecccCCcCccEeeCC
Q 040119          108 KMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       108 ~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      ++.. +|.+ ..+.     .|++|+.+++.
T Consensus        76 ~i~~-~~~~-~~l~-----~~~~L~~L~l~   98 (124)
T d1dcea3          76 RLQQ-SAAI-QPLV-----SCPRLVLLNLQ   98 (124)
T ss_dssp             CCCS-SSTT-GGGG-----GCTTCCEEECT
T ss_pred             ccCC-CCCc-hhhc-----CCCCCCEEECC
Confidence            8542 4432 1233     78889988887

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.23  E-value=9e-11  Score=101.94  Aligned_cols=146  Identities=14%  Similarity=0.219  Sum_probs=107.5

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|+.|++++|..... .....+++|+.|++++|.+. .+++ +.++++|+.|++++|.+..  +| .+..+++|+.|+
T Consensus        39 l~~l~~L~l~~~~i~~l-~~l~~l~nL~~L~Ls~N~l~-~~~~-l~~l~~L~~L~l~~n~~~~--~~-~l~~l~~L~~L~  112 (199)
T d2omxa2          39 LDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSNNQLT-DITP-LKNLTKLVDILMNNNQIAD--IT-PLANLTNLTGLT  112 (199)
T ss_dssp             HTTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--CG-GGTTCTTCSEEE
T ss_pred             hcCCCEEECCCCCCCCc-cccccCCCcCcCcccccccc-Cccc-ccCCccccccccccccccc--cc-cccccccccccc
Confidence            35789999999985432 33455688999999999987 4554 8899999999999998863  55 488899999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      +++|.+..++ .+..+++|+.|++++|++.    .++ .+.     ++++|+.+.+.     .+.+.  .+|. |...+ 
T Consensus       113 l~~~~~~~~~-~~~~l~~L~~L~l~~n~l~----~~~-~l~-----~~~~L~~L~l~-----~n~l~--~l~~-l~~l~-  172 (199)
T d2omxa2         113 LFNNQITDID-PLKNLTNLNRLELSSNTIS----DIS-ALS-----GLTSLQQLNFS-----SNQVT--DLKP-LANLT-  172 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSCCC----CCG-GGT-----TCTTCSEEECC-----SSCCC--CCGG-GTTCT-
T ss_pred             cccccccccc-ccchhhhhHHhhhhhhhhc----ccc-ccc-----ccccccccccc-----ccccc--CCcc-ccCCC-
Confidence            9999888765 4788999999999998743    222 232     67777777765     22332  2443 44444 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++..++++.|.+
T Consensus       173 --~L~~L~ls~N~i  184 (199)
T d2omxa2         173 --TLERLDISSNKV  184 (199)
T ss_dssp             --TCCEEECCSSCC
T ss_pred             --CCCEEECCCCCC
Confidence              788899988877

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.23  E-value=3.5e-11  Score=104.01  Aligned_cols=109  Identities=14%  Similarity=0.099  Sum_probs=95.3

Q ss_pred             CCccEEEeeCCCCC--CCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCKGS--PSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~--~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +++++|+|++|++.  .+...+..+.+|+.|++++|.+....+..+..+++|+.|+|++|++. +..|..|.++++|+.|
T Consensus        29 ~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N~l~-~l~~~~F~~l~~L~~L  107 (192)
T d1w8aa_          29 LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTL  107 (192)
T ss_dssp             TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCC-EECSSSSTTCTTCCEE
T ss_pred             CCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeecccccc-ccCHHHHhCCCccccc
Confidence            47999999999975  34555677889999999999999888889999999999999999997 4446679999999999


Q ss_pred             EccCCCCCccch-hhhCCCCccEEEccCCcCcc
Q 040119           80 HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQ  111 (366)
Q Consensus        80 ~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~  111 (366)
                      +|++|.|+.+|. .+..+++|++|+|++|++..
T Consensus       108 ~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~  140 (192)
T d1w8aa_         108 NLYDNQISCVMPGSFEHLNSLTSLNLASNPFNC  140 (192)
T ss_dssp             ECCSSCCCEECTTSSTTCTTCCEEECTTCCBCC
T ss_pred             ccCCccccccCHHHhcCCccccccccccccccc
Confidence            999999998865 67899999999999998653

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.22  E-value=7.4e-11  Score=103.42  Aligned_cols=145  Identities=13%  Similarity=0.176  Sum_probs=106.4

Q ss_pred             CCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEc
Q 040119            2 KNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHL   81 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~L   81 (366)
                      .+|+.|++++|...... ....+++|+.|++++|.+. .++. +..+++|+.|++++|++++  +| .+..+++|+.|++
T Consensus        46 ~~L~~L~l~~~~i~~l~-~l~~l~~L~~L~L~~n~i~-~l~~-~~~l~~L~~L~l~~n~i~~--l~-~l~~l~~L~~L~l  119 (210)
T d1h6ta2          46 NSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLT-DIKP-LANLKNLGWLFLDENKVKD--LS-SLKDLKKLKSLSL  119 (210)
T ss_dssp             HTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCC-CCGG-GTTCTTCCEEECCSSCCCC--GG-GGTTCTTCCEEEC
T ss_pred             cCccEEECcCCCCCCch-hHhhCCCCCEEeCCCcccc-Cccc-cccCccccccccccccccc--cc-ccccccccccccc
Confidence            47889999988755432 2455778999999999987 5664 7889999999999999864  66 5888999999999


Q ss_pred             cCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCCC
Q 040119           82 SGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNNE  161 (366)
Q Consensus        82 s~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~~  161 (366)
                      ++|.+..++ .+..+++|+.+++++|.+..    .+ .     ..++++|+.+.++     .+.+.  .++. |....  
T Consensus       120 ~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~----~~-~-----~~~l~~L~~l~l~-----~n~l~--~i~~-l~~l~--  178 (210)
T d1h6ta2         120 EHNGISDIN-GLVHLPQLESLYLGNNKITD----IT-V-----LSRLTKLDTLSLE-----DNQIS--DIVP-LAGLT--  178 (210)
T ss_dssp             TTSCCCCCG-GGGGCTTCCEEECCSSCCCC----CG-G-----GGGCTTCSEEECC-----SSCCC--CCGG-GTTCT--
T ss_pred             ccccccccc-cccccccccccccccccccc----cc-c-----ccccccccccccc-----ccccc--cccc-ccCCC--
Confidence            999888776 57888899999998888542    11 1     2256777777776     33332  3443 44444  


Q ss_pred             CceEEEECCCCCC
Q 040119          162 GSSITISTPPKTY  174 (366)
Q Consensus       162 g~~~~l~L~~n~~  174 (366)
                       ++..++|+.|.+
T Consensus       179 -~L~~L~Ls~N~i  190 (210)
T d1h6ta2         179 -KLQNLYLSKNHI  190 (210)
T ss_dssp             -TCCEEECCSSCC
T ss_pred             -CCCEEECCCCCC
Confidence             788888888877

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=4.6e-11  Score=109.18  Aligned_cols=155  Identities=16%  Similarity=0.141  Sum_probs=112.8

Q ss_pred             CCccEEEeeCCC--CCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEE
Q 040119            2 KNLKELSFRGCK--GSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEEL   79 (366)
Q Consensus         2 ~~L~~L~Ls~n~--~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L   79 (366)
                      +.++.|.+..+.  ...+...+..+++|+.|+++.|.+....+..+..+.+|+.+++++|+++ +..+..|..+++|+.|
T Consensus        80 ~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~-~i~~~~f~~~~~L~~L  158 (284)
T d1ozna_          80 ALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHL  158 (284)
T ss_dssp             TTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEE
T ss_pred             ccccccccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhcccccc-ccChhHhccccchhhc
Confidence            456666665444  2233444566678999999999887555666778888999999999997 3345678888899999


Q ss_pred             EccCCCCCccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccC
Q 040119           80 HLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQ  158 (366)
Q Consensus        80 ~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~  158 (366)
                      +|++|+|+.+| ..+.++++|+.|++++|++.+..   |..+.     ++++|+.++++     .+.+.+ ..|.+|...
T Consensus       159 ~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i~---~~~f~-----~l~~L~~L~l~-----~N~i~~-~~~~~~~~~  224 (284)
T d1ozna_         159 FLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVH---PHAFR-----DLGRLMTLYLF-----ANNLSA-LPTEALAPL  224 (284)
T ss_dssp             ECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC---TTTTT-----TCTTCCEEECC-----SSCCSC-CCHHHHTTC
T ss_pred             ccccCcccccchhhhccccccchhhhhhccccccC---hhHhh-----hhhhccccccc-----cccccc-ccccccccc
Confidence            99999998775 56788999999999999866432   23444     67788888887     455543 355677766


Q ss_pred             CCCCceEEEECCCCCC
Q 040119          159 NNEGSSITISTPPKTY  174 (366)
Q Consensus       159 ~~~g~~~~l~L~~n~~  174 (366)
                      .   ++..++|..|.+
T Consensus       225 ~---~L~~L~l~~N~l  237 (284)
T d1ozna_         225 R---ALQYLRLNDNPW  237 (284)
T ss_dssp             T---TCCEEECCSSCE
T ss_pred             c---ccCEEEecCCCC
Confidence            6   788888888876

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.20  E-value=9.3e-11  Score=101.83  Aligned_cols=120  Identities=18%  Similarity=0.271  Sum_probs=98.4

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|++|+|++|+..... ....+++|+.|+++.|.+. .+|. +.++++|+.|++++|.+..   ...+..+++|+.|+
T Consensus        61 l~nL~~L~Ls~N~l~~~~-~l~~l~~L~~L~l~~n~~~-~~~~-l~~l~~L~~L~l~~~~~~~---~~~~~~l~~L~~L~  134 (199)
T d2omxa2          61 LNNLTQINFSNNQLTDIT-PLKNLTKLVDILMNNNQIA-DITP-LANLTNLTGLTLFNNQITD---IDPLKNLTNLNRLE  134 (199)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC---CGGGTTCTTCSEEE
T ss_pred             CCCcCcCccccccccCcc-cccCCcccccccccccccc-cccc-ccccccccccccccccccc---ccccchhhhhHHhh
Confidence            589999999999865443 3567788999999999987 6665 8999999999999999862   34588999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      +++|.+..+| .+..+++|+.|++.+|++..    ++ .+     .++++|+.|+++
T Consensus       135 l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~----l~-~l-----~~l~~L~~L~ls  180 (199)
T d2omxa2         135 LSSNTISDIS-ALSGLTSLQQLNFSSNQVTD----LK-PL-----ANLTTLERLDIS  180 (199)
T ss_dssp             CCSSCCCCCG-GGTTCTTCSEEECCSSCCCC----CG-GG-----TTCTTCCEEECC
T ss_pred             hhhhhhcccc-cccccccccccccccccccC----Cc-cc-----cCCCCCCEEECC
Confidence            9999999887 58899999999999998543    22 12     377788888776

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.20  E-value=1.4e-10  Score=105.84  Aligned_cols=156  Identities=21%  Similarity=0.258  Sum_probs=118.1

Q ss_pred             CCCccEEEeeCCCCCC-CCCCcCCCCCccEEECc-CCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCE
Q 040119            1 MKNLKELSFRGCKGSP-SSASWFLPFPINLMRWS-SDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEE   78 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~-~~~~~~~~~~L~~L~ls-~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~   78 (366)
                      +++|++|++++|+... +.........+..+... .+.+...-|..+.++++|+.|+|++|.+. ...+..+..+.+|+.
T Consensus        55 l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~  133 (284)
T d1ozna_          55 CRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQY  133 (284)
T ss_dssp             CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCC-CCCTTTTTTCTTCCE
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEecCCcccc-cccccccchhcccch
Confidence            5789999999998543 33334445567776654 55666455777899999999999999997 455677888999999


Q ss_pred             EEccCCCCCccc-hhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCccccc
Q 040119           79 LHLSGNNFFTLP-ASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEY  157 (366)
Q Consensus        79 L~Ls~N~~~~lP-~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~  157 (366)
                      +++++|+|+.+| ..+..+++|+.|++++|++.+ +|.  ..+     .++++|+.+.+.     .+.+.+ ..|.+|..
T Consensus       134 l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~-l~~--~~f-----~~l~~L~~l~l~-----~N~l~~-i~~~~f~~  199 (284)
T d1ozna_         134 LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISS-VPE--RAF-----RGLHSLDRLLLH-----QNRVAH-VHPHAFRD  199 (284)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCE-ECT--TTT-----TTCTTCCEEECC-----SSCCCE-ECTTTTTT
T ss_pred             hhhccccccccChhHhccccchhhcccccCcccc-cch--hhh-----ccccccchhhhh-----hccccc-cChhHhhh
Confidence            999999999886 467889999999999998543 221  122     378888888876     333332 35888887


Q ss_pred             CCCCCceEEEECCCCCC
Q 040119          158 QNNEGSSITISTPPKTY  174 (366)
Q Consensus       158 ~~~~g~~~~l~L~~n~~  174 (366)
                      ..   ++..+++..|.+
T Consensus       200 l~---~L~~L~l~~N~i  213 (284)
T d1ozna_         200 LG---RLMTLYLFANNL  213 (284)
T ss_dssp             CT---TCCEEECCSSCC
T ss_pred             hh---hccccccccccc
Confidence            66   788999999998

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.20  E-value=5.4e-11  Score=109.48  Aligned_cols=131  Identities=18%  Similarity=0.209  Sum_probs=101.9

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|++++|......  ....++|+.|++++|......+..+..++.++.|++++|.+. +..|..+..+++|++|+
T Consensus       149 l~~L~~l~l~~n~l~~l~--~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~-~~~~~~~~~l~~L~~L~  225 (305)
T d1xkua_         149 MKKLSYIRIADTNITTIP--QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSIS-AVDNGSLANTPHLRELH  225 (305)
T ss_dssp             CTTCCEEECCSSCCCSCC--SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCC-EECTTTGGGSTTCCEEE
T ss_pred             ccccCccccccCCccccC--cccCCccCEEECCCCcCCCCChhHhhcccccccccccccccc-ccccccccccccceeee
Confidence            468899999999754321  223577999999999998888888999999999999999997 55577889999999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceec-ccCCcCccEeeCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIF-LDGCVSLETLSDG  137 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~-~~~c~sL~~l~~~  137 (366)
                      |++|+|+.+|.++.++++|++|+|++|++. .|+.-  .+..+. .....+|+.+++.
T Consensus       226 L~~N~L~~lp~~l~~l~~L~~L~Ls~N~i~-~i~~~--~f~~~~~~~~~~~L~~L~L~  280 (305)
T d1xkua_         226 LNNNKLVKVPGGLADHKYIQVVYLHNNNIS-AIGSN--DFCPPGYNTKKASYSGVSLF  280 (305)
T ss_dssp             CCSSCCSSCCTTTTTCSSCCEEECCSSCCC-CCCTT--SSSCSSCCTTSCCCSEEECC
T ss_pred             cccccccccccccccccCCCEEECCCCccC-ccChh--hccCcchhcccCCCCEEECC
Confidence            999999999999999999999999999843 45421  111011 1244567777665

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.14  E-value=8.9e-10  Score=101.13  Aligned_cols=121  Identities=21%  Similarity=0.323  Sum_probs=75.8

Q ss_pred             CCccEEEeeCCCCCCC-CCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            2 KNLKELSFRGCKGSPS-SASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~-~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      ++|++|+|++|++..- ...+..+++|+.|++++|.+....|..|.++++|+.|+|++|++..  +|..+.  ..|..|+
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~--l~~~~~--~~l~~L~  106 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE--LPEKMP--KTLQELR  106 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB--CCSSCC--TTCCEEE
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCc--Cccchh--hhhhhhh
Confidence            4678888888875433 3345666778888888888876557778888888888888888753  665432  3455555


Q ss_pred             ccCCCCCccc---------------------------hhhhCCCCccEEEccCCcCccCCC-CCCcccceecccC
Q 040119           81 LSGNNFFTLP---------------------------ASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIFLDG  127 (366)
Q Consensus        81 Ls~N~~~~lP---------------------------~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~~~~  127 (366)
                      +..|.+..++                           ..+..+++|+.+++++|.+.. +| ..+++++.|++++
T Consensus       107 ~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~-l~~~~~~~L~~L~l~~  180 (305)
T d1xkua_         107 VHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQGLPPSLTELHLDG  180 (305)
T ss_dssp             CCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-CCSSCCTTCSEEECTT
T ss_pred             ccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccc-cCcccCCccCEEECCC
Confidence            5555443322                           223456667777777776443 32 3455666665433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.13  E-value=1.5e-10  Score=101.46  Aligned_cols=141  Identities=19%  Similarity=0.249  Sum_probs=106.6

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|++|+|++|++.... ....+++|+.|++++|.+. .+|. +..+++|+.|++++|.+..  + ..+..++.|+.++
T Consensus        67 l~~L~~L~L~~n~i~~l~-~~~~l~~L~~L~l~~n~i~-~l~~-l~~l~~L~~L~l~~~~~~~--~-~~l~~l~~l~~l~  140 (210)
T d1h6ta2          67 LPNVTKLFLNGNKLTDIK-PLANLKNLGWLFLDENKVK-DLSS-LKDLKKLKSLSLEHNGISD--I-NGLVHLPQLESLY  140 (210)
T ss_dssp             CTTCCEEECCSSCCCCCG-GGTTCTTCCEEECCSSCCC-CGGG-GTTCTTCCEEECTTSCCCC--C-GGGGGCTTCCEEE
T ss_pred             CCCCCEEeCCCccccCcc-ccccCcccccccccccccc-cccc-ccccccccccccccccccc--c-ccccccccccccc
Confidence            579999999999865433 3456788999999999997 6764 8999999999999999863  4 4678899999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      +++|.++.++ .+..+++|+.+++++|++..    +++ +     .++++|+.|+++     .+.+.  .|| .|.... 
T Consensus       141 ~~~n~l~~~~-~~~~l~~L~~l~l~~n~l~~----i~~-l-----~~l~~L~~L~Ls-----~N~i~--~l~-~l~~l~-  200 (210)
T d1h6ta2         141 LGNNKITDIT-VLSRLTKLDTLSLEDNQISD----IVP-L-----AGLTKLQNLYLS-----KNHIS--DLR-ALAGLK-  200 (210)
T ss_dssp             CCSSCCCCCG-GGGGCTTCSEEECCSSCCCC----CGG-G-----TTCTTCCEEECC-----SSCCC--BCG-GGTTCT-
T ss_pred             cccccccccc-cccccccccccccccccccc----ccc-c-----cCCCCCCEEECC-----CCCCC--CCh-hhcCCC-
Confidence            9999998765 57788999999999998542    221 2     367788888876     33332  355 355554 


Q ss_pred             CCceEEEEC
Q 040119          161 EGSSITIST  169 (366)
Q Consensus       161 ~g~~~~l~L  169 (366)
                        ++..++|
T Consensus       201 --~L~~L~L  207 (210)
T d1h6ta2         201 --NLDVLEL  207 (210)
T ss_dssp             --TCSEEEE
T ss_pred             --CCCEEEc
Confidence              5555554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.12  E-value=2.2e-11  Score=112.69  Aligned_cols=114  Identities=17%  Similarity=0.168  Sum_probs=84.0

Q ss_pred             CCCccEEEeeCCCCCCCCCC-cCCC-CCccE-----------------------EECcCCCCCCCCCccCCCCCCCcEEE
Q 040119            1 MKNLKELSFRGCKGSPSSAS-WFLP-FPINL-----------------------MRWSSDPMALSLPSSLSGLCSLTKLD   55 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~-~~~~-~~L~~-----------------------L~ls~n~l~~~lP~sl~~L~~L~~L~   55 (366)
                      |++|+.+++++|......+. ...+ ..++.                       ++++.+...+.+|..+..+++|+.|+
T Consensus       148 l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~~l~l~~~~~~~~~~~~~~~~~~l~~l~  227 (313)
T d1ogqa_         148 LPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIH  227 (313)
T ss_dssp             CTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCSEEECCSSEEEECCGGGCCTTSCCSEEE
T ss_pred             Ccccceeecccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            46788888888874422221 1111 11234                       44555555556677777888899999


Q ss_pred             eecCCCCCCCCCccCCCCCCCCEEEccCCCCC-ccchhhhCCCCccEEEccCCcCccCCCCC
Q 040119           56 ISYCDLGEGAIPSGIGNLCSLEELHLSGNNFF-TLPASIYRLSKLSKIFLKDCKMLQNLPRL  116 (366)
Q Consensus        56 Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~-~lP~~i~~L~~L~~L~L~~n~~l~~lp~l  116 (366)
                      +++|.+. +. +..++.+++|+.|+|++|+|+ .+|.+|++|++|++|+|++|++.+.+|++
T Consensus       228 ~~~~~l~-~~-~~~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~  287 (313)
T d1ogqa_         228 LAKNSLA-FD-LGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG  287 (313)
T ss_dssp             CCSSEEC-CB-GGGCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS
T ss_pred             ccccccc-cc-ccccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCc
Confidence            9999987 54 446888999999999999998 89999999999999999999988878764

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=2.4e-10  Score=95.77  Aligned_cols=104  Identities=17%  Similarity=0.055  Sum_probs=53.3

Q ss_pred             cEEEeeCCCCCCCCCCcCCCCCccEEECcCCC-CCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccC
Q 040119            5 KELSFRGCKGSPSSASWFLPFPINLMRWSSDP-MALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSG   83 (366)
Q Consensus         5 ~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~-l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~   83 (366)
                      +.++.+++...........+.+|+.|++++|+ +...-+..|.++++|+.|+|++|+|+ ..-|..|..+++|++|+|++
T Consensus        11 ~~l~c~~~~~~~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~-~i~~~~f~~l~~L~~L~Ls~   89 (156)
T d2ifga3          11 SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF   89 (156)
T ss_dssp             SCEECCSSCCCTTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCC-EECTTGGGSCSCCCEEECCS
T ss_pred             CeEEecCCCCccCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccC-CcccccccccccccceeccC
Confidence            34455444433222223344455566665443 44222334555666666666666664 22244455666666666666


Q ss_pred             CCCCccchhhhCCCCccEEEccCCcC
Q 040119           84 NNFFTLPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        84 N~~~~lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      |+|+.+|..+.....|+.|+|++|++
T Consensus        90 N~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          90 NALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             SCCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCCcccChhhhccccccccccCCCcc
Confidence            66666655444444566666666553

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.07  E-value=1.8e-10  Score=97.20  Aligned_cols=105  Identities=15%  Similarity=0.153  Sum_probs=84.9

Q ss_pred             CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchh-hhCCCCcc
Q 040119           22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPAS-IYRLSKLS  100 (366)
Q Consensus        22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~-i~~L~~L~  100 (366)
                      .....++.|+|++|.+. .+|..+..+++|+.|+|++|.|.+  ++ .+..+++|++|+|++|.++.+|.. +..+++|+
T Consensus        15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~--l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRK--LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCE--EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCc--cC-CcccCcchhhhhcccccccCCCccccccccccc
Confidence            34456899999999998 778766889999999999999974  64 589999999999999999999865 46799999


Q ss_pred             EEEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119          101 KIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       101 ~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      .|++++|++. .++++ ..+     .++++|+.+++.
T Consensus        91 ~L~L~~N~i~-~~~~l-~~l-----~~l~~L~~L~l~  120 (162)
T d1a9na_          91 ELILTNNSLV-ELGDL-DPL-----ASLKSLTYLCIL  120 (162)
T ss_dssp             EEECCSCCCC-CGGGG-GGG-----GGCTTCCEEECC
T ss_pred             cceecccccc-ccccc-ccc-----ccccccchhhcC
Confidence            9999999843 23322 122     378888888876

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.04  E-value=5.5e-13  Score=116.75  Aligned_cols=131  Identities=18%  Similarity=0.182  Sum_probs=79.8

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |++|++|+|++|++... +....+.+|+.|++++|.+. .+|.....+++|+.|++++|.++.  ++ .+..+++|+.|+
T Consensus        47 L~~L~~L~Ls~n~I~~i-~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~l~~N~i~~--l~-~~~~l~~L~~L~  121 (198)
T d1m9la_          47 LKACKHLALSTNNIEKI-SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS--LS-GIEKLVNLRVLY  121 (198)
T ss_dssp             TTTCCEEECSEEEESCC-CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEECSEEECCC--HH-HHHHHHHSSEEE
T ss_pred             ccccceeECcccCCCCc-ccccCCccccChhhcccccc-cccccccccccccccccccccccc--cc-cccccccccccc
Confidence            46677777777764422 23445566777777777775 566544445567777777777753  43 466677777777


Q ss_pred             ccCCCCCccc--hhhhCCCCccEEEccCCcCccCCCCCCc--ccceecccCCcCccEeeC
Q 040119           81 LSGNNFFTLP--ASIYRLSKLSKIFLKDCKMLQNLPRLPA--SIHGIFLDGCVSLETLSD  136 (366)
Q Consensus        81 Ls~N~~~~lP--~~i~~L~~L~~L~L~~n~~l~~lp~lp~--~L~~L~~~~c~sL~~l~~  136 (366)
                      |++|.|+.++  ..+..+++|+.|+|++|++....+....  ..+...+..+++|+.|+.
T Consensus       122 L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~  181 (198)
T d1m9la_         122 MSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             ESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCCEESS
T ss_pred             cccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcCEeCC
Confidence            7777777665  3567777777777777765433332211  111122345666766654

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=6.3e-10  Score=104.41  Aligned_cols=144  Identities=21%  Similarity=0.295  Sum_probs=105.0

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|++++|..... +.....++|+.|+++.|.+. .+++ +..+..++.+.++.|.+..   +..+..+.+++.|+
T Consensus       240 l~~L~~L~l~~n~l~~~-~~~~~~~~L~~L~l~~~~l~-~~~~-~~~~~~l~~l~~~~n~l~~---~~~~~~~~~l~~L~  313 (384)
T d2omza2         240 LTNLTDLDLANNQISNL-APLSGLTKLTELKLGANQIS-NISP-LAGLTALTNLELNENQLED---ISPISNLKNLTYLT  313 (384)
T ss_dssp             CTTCSEEECCSSCCCCC-GGGTTCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCSC---CGGGGGCTTCSEEE
T ss_pred             ccccchhccccCccCCC-CcccccccCCEeeccCcccC-CCCc-ccccccccccccccccccc---ccccchhcccCeEE
Confidence            47899999999985543 33566778999999999987 4554 7788889999999888862   34577888899999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      +++|+++.++ .+..+++|+.|++++|++.    .++ .+.     +|++|+.|+++     .+.+.+  +|. +.+.+ 
T Consensus       314 ls~n~l~~l~-~l~~l~~L~~L~L~~n~l~----~l~-~l~-----~l~~L~~L~l~-----~N~l~~--l~~-l~~l~-  373 (384)
T d2omza2         314 LYFNNISDIS-PVSSLTKLQRLFFANNKVS----DVS-SLA-----NLTNINWLSAG-----HNQISD--LTP-LANLT-  373 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCCEEECCSSCCC----CCG-GGG-----GCTTCCEEECC-----SSCCCB--CGG-GTTCT-
T ss_pred             CCCCCCCCCc-ccccCCCCCEEECCCCCCC----CCh-hHc-----CCCCCCEEECC-----CCcCCC--Chh-hccCC-
Confidence            9999988876 3788889999999988743    222 233     77888888876     333432  443 44444 


Q ss_pred             CCceEEEECCCC
Q 040119          161 EGSSITISTPPK  172 (366)
Q Consensus       161 ~g~~~~l~L~~n  172 (366)
                        ++.+++|+.|
T Consensus       374 --~L~~L~L~~N  383 (384)
T d2omza2         374 --RITQLGLNDQ  383 (384)
T ss_dssp             --TCSEEECCCE
T ss_pred             --CCCEeeCCCC
Confidence              6777777765

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.03  E-value=1.3e-09  Score=102.15  Aligned_cols=146  Identities=19%  Similarity=0.247  Sum_probs=114.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|++++|..... +....+++|+.|++++|.+. .++. +..+++|+.|++++|.+..  ++ .+..+..++.+.
T Consensus       218 ~~~L~~L~l~~n~l~~~-~~l~~l~~L~~L~l~~n~l~-~~~~-~~~~~~L~~L~l~~~~l~~--~~-~~~~~~~l~~l~  291 (384)
T d2omza2         218 LTNLDELSLNGNQLKDI-GTLASLTNLTDLDLANNQIS-NLAP-LSGLTKLTELKLGANQISN--IS-PLAGLTALTNLE  291 (384)
T ss_dssp             CTTCCEEECCSSCCCCC-GGGGGCTTCSEEECCSSCCC-CCGG-GTTCTTCSEEECCSSCCCC--CG-GGTTCTTCSEEE
T ss_pred             cCCCCEEECCCCCCCCc-chhhcccccchhccccCccC-CCCc-ccccccCCEeeccCcccCC--CC-cccccccccccc
Confidence            36899999999985543 34556788999999999997 4554 8899999999999999973  44 477889999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecccCCcCccEeeCCCCCCcccccCCCCCCcccccCCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDGYWRDCSIVVPGSEIPEWFEYQNN  160 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~~f~~~~~~l~g~~iP~~f~~~~~  160 (366)
                      ++.|.++.++ .+..+++++.|++++|++.+    +++ +.     ++++|+.|+++     .+.+.  .+| +|.... 
T Consensus       292 ~~~n~l~~~~-~~~~~~~l~~L~ls~n~l~~----l~~-l~-----~l~~L~~L~L~-----~n~l~--~l~-~l~~l~-  351 (384)
T d2omza2         292 LNENQLEDIS-PISNLKNLTYLTLYFNNISD----ISP-VS-----SLTKLQRLFFA-----NNKVS--DVS-SLANLT-  351 (384)
T ss_dssp             CCSSCCSCCG-GGGGCTTCSEEECCSSCCSC----CGG-GG-----GCTTCCEEECC-----SSCCC--CCG-GGGGCT-
T ss_pred             cccccccccc-ccchhcccCeEECCCCCCCC----Ccc-cc-----cCCCCCEEECC-----CCCCC--CCh-hHcCCC-
Confidence            9999999876 58889999999999998553    221 33     67888888876     33333  355 566655 


Q ss_pred             CCceEEEECCCCCC
Q 040119          161 EGSSITISTPPKTY  174 (366)
Q Consensus       161 ~g~~~~l~L~~n~~  174 (366)
                        ++.++++..|.+
T Consensus       352 --~L~~L~l~~N~l  363 (384)
T d2omza2         352 --NINWLSAGHNQI  363 (384)
T ss_dssp             --TCCEEECCSSCC
T ss_pred             --CCCEEECCCCcC
Confidence              899999999988

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.91  E-value=4.3e-09  Score=92.60  Aligned_cols=101  Identities=21%  Similarity=0.258  Sum_probs=57.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      +++|+.|++++|.... .+....++.|+.+.++.+.... ++. +...+.+..+.++++.+. .  ...+..+++|+.|+
T Consensus        84 l~~l~~l~~~~n~~~~-i~~l~~l~~L~~l~l~~~~~~~-~~~-~~~~~~~~~l~~~~~~~~-~--~~~~~~~~~L~~L~  157 (227)
T d1h6ua2          84 LTKITELELSGNPLKN-VSAIAGLQSIKTLDLTSTQITD-VTP-LAGLSNLQVLYLDLNQIT-N--ISPLAGLTNLQYLS  157 (227)
T ss_dssp             CCSCCEEECCSCCCSC-CGGGTTCTTCCEEECTTSCCCC-CGG-GTTCTTCCEEECCSSCCC-C--CGGGGGCTTCCEEE
T ss_pred             cccccccccccccccc-cccccccccccccccccccccc-cch-hccccchhhhhchhhhhc-h--hhhhcccccccccc
Confidence            4577777887776432 2334455667777777776642 222 455556666666665554 1  22344555566666


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCc
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~  108 (366)
                      +++|.+..++. +.++++|+.|+|++|+
T Consensus       158 l~~n~~~~~~~-l~~l~~L~~L~Ls~n~  184 (227)
T d1h6ua2         158 IGNAQVSDLTP-LANLSKLTTLKADDNK  184 (227)
T ss_dssp             CCSSCCCCCGG-GTTCTTCCEEECCSSC
T ss_pred             ccccccccchh-hcccccceecccCCCc
Confidence            66665554442 5556666666666655

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.89  E-value=2.4e-08  Score=87.66  Aligned_cols=156  Identities=17%  Similarity=0.203  Sum_probs=100.2

Q ss_pred             CCCccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEE
Q 040119            1 MKNLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELH   80 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~   80 (366)
                      |.+|+.|++.+|.+..- .....+++|+.|++++|.+. .+++ +..+++|+.|++++|.++.  ++ .+..+++|+.|.
T Consensus        40 l~~L~~L~l~~~~i~~l-~~l~~l~~L~~L~ls~n~i~-~~~~-l~~l~~l~~l~~~~n~~~~--i~-~l~~l~~L~~l~  113 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI-EGVQYLNNLIGLELKDNQIT-DLAP-LKNLTKITELELSGNPLKN--VS-AIAGLQSIKTLD  113 (227)
T ss_dssp             HHTCCEEECTTSCCCCC-TTGGGCTTCCEEECCSSCCC-CCGG-GTTCCSCCEEECCSCCCSC--CG-GGTTCTTCCEEE
T ss_pred             cCCcCEEECCCCCCCcc-hhHhcCCCCcEeecCCceee-cccc-ccccccccccccccccccc--cc-cccccccccccc
Confidence            35789999999985543 34566788999999999987 4443 8899999999999998863  54 577889999999


Q ss_pred             ccCCCCCccchhhhCCCCccEEEccCCcCccCCC-CCCcccceec-----------ccCCcCccEeeCCCCCCcccccCC
Q 040119           81 LSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLP-RLPASIHGIF-----------LDGCVSLETLSDGYWRDCSIVVPG  148 (366)
Q Consensus        81 Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp-~lp~~L~~L~-----------~~~c~sL~~l~~~~f~~~~~~l~g  148 (366)
                      ++++.+..++ .+...+.+..+.++++.+....+ .-+++++.|+           +.++++|+.++++     .+.+. 
T Consensus       114 l~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~l~~l~~L~~L~Ls-----~n~l~-  186 (227)
T d1h6ua2         114 LTSTQITDVT-PLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKAD-----DNKIS-  186 (227)
T ss_dssp             CTTSCCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECC-----SSCCC-
T ss_pred             cccccccccc-hhccccchhhhhchhhhhchhhhhccccccccccccccccccchhhcccccceecccC-----CCccC-
Confidence            9888776544 24445555555555554332111 0011222222           2355666666665     23332 


Q ss_pred             CCCCcccccCCCCCceEEEECCCCCC
Q 040119          149 SEIPEWFEYQNNEGSSITISTPPKTY  174 (366)
Q Consensus       149 ~~iP~~f~~~~~~g~~~~l~L~~n~~  174 (366)
                       .+|. |....   ++..++|..|.+
T Consensus       187 -~l~~-l~~l~---~L~~L~Ls~N~l  207 (227)
T d1h6ua2         187 -DISP-LASLP---NLIEVHLKNNQI  207 (227)
T ss_dssp             -CCGG-GGGCT---TCCEEECTTSCC
T ss_pred             -CChh-hcCCC---CCCEEECcCCcC
Confidence             2443 54444   677888888776

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=2.3e-08  Score=88.14  Aligned_cols=81  Identities=21%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             CccEEECcCCCCCCCCCc-cCCCCCCCcEEEeecCCCCCCCCC-ccCCCCCCCCEEEccC-CCCCccc-hhhhCCCCccE
Q 040119           26 PINLMRWSSDPMALSLPS-SLSGLCSLTKLDISYCDLGEGAIP-SGIGNLCSLEELHLSG-NNFFTLP-ASIYRLSKLSK  101 (366)
Q Consensus        26 ~L~~L~ls~n~l~~~lP~-sl~~L~~L~~L~Ls~n~l~~~~lP-~~i~~L~sL~~L~Ls~-N~~~~lP-~~i~~L~~L~~  101 (366)
                      +++.|++++|.+. .+|. .|.++++|++|+|++|.+. ..+| ..|..++.++.|.+.. |++..++ ..+.++++|+.
T Consensus        30 ~l~~L~Ls~n~i~-~l~~~~f~~l~~L~~L~ls~n~~~-~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~  107 (242)
T d1xwdc1          30 NAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVL-EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQY  107 (242)
T ss_dssp             CCSEEEEESCCCC-EECTTTTTTCTTCCEEEEESCTTC-CEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCE
T ss_pred             CCCEEECcCCcCC-ccChhHhhccchhhhhhhcccccc-ceeeccccccccccccccccccccccccccccccccccccc
Confidence            4555555555554 3332 3455555555555555554 2222 2344555555555432 3444332 33455555555


Q ss_pred             EEccCCc
Q 040119          102 IFLKDCK  108 (366)
Q Consensus       102 L~L~~n~  108 (366)
                      |++.+|+
T Consensus       108 l~l~~~~  114 (242)
T d1xwdc1         108 LLISNTG  114 (242)
T ss_dssp             EEEESCC
T ss_pred             cccchhh
Confidence            5555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=1.7e-08  Score=84.24  Aligned_cols=99  Identities=19%  Similarity=0.151  Sum_probs=78.6

Q ss_pred             ccEEECcCCCCCCCCCccCCCCCCCcEEEeecCC-CCCCCCC-ccCCCCCCCCEEEccCCCCCccc-hhhhCCCCccEEE
Q 040119           27 INLMRWSSDPMALSLPSSLSGLCSLTKLDISYCD-LGEGAIP-SGIGNLCSLEELHLSGNNFFTLP-ASIYRLSKLSKIF  103 (366)
Q Consensus        27 L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~-l~~~~lP-~~i~~L~sL~~L~Ls~N~~~~lP-~~i~~L~~L~~L~  103 (366)
                      ...++++.+.+. ..|..+..+++|+.|+|++++ +.  .++ ..|..+++|+.|+|++|+|+.++ ..+..+++|+.|+
T Consensus        10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~--~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~   86 (156)
T d2ifga3          10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQ--HLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN   86 (156)
T ss_dssp             SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCC--EECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred             CCeEEecCCCCc-cCcccccCccccCeeecCCCcccc--ccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence            456888888887 788889999999999998775 75  354 67999999999999999999885 5789999999999


Q ss_pred             ccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119          104 LKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       104 L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++|++.    .+|..+.     ...+|+.|+++
T Consensus        87 Ls~N~l~----~l~~~~~-----~~~~l~~L~L~  111 (156)
T d2ifga3          87 LSFNALE----SLSWKTV-----QGLSLQELVLS  111 (156)
T ss_dssp             CCSSCCS----CCCSTTT-----CSCCCCEEECC
T ss_pred             ccCCCCc----ccChhhh-----ccccccccccC
Confidence            9999954    3443332     22356677665

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.73  E-value=6e-08  Score=89.04  Aligned_cols=109  Identities=26%  Similarity=0.251  Sum_probs=84.8

Q ss_pred             CccEEEeeCCCCCCCCCCcCCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEcc
Q 040119            3 NLKELSFRGCKGSPSSASWFLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLS   82 (366)
Q Consensus         3 ~L~~L~Ls~n~~~~~~~~~~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls   82 (366)
                      +|++|+|++|.... .|.  ..++|+.|++++|.+. .+|..   +.+|+.|++++|.+..  ++..   .+.|++|+++
T Consensus        39 ~l~~LdLs~~~L~~-lp~--~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~--l~~l---p~~L~~L~L~  106 (353)
T d1jl5a_          39 QAHELELNNLGLSS-LPE--LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKA--LSDL---PPLLEYLGVS  106 (353)
T ss_dssp             TCSEEECTTSCCSC-CCS--CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSC--CCSC---CTTCCEEECC
T ss_pred             CCCEEEeCCCCCCC-CCC--CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccch--hhhh---cccccccccc
Confidence            68999999998543 232  3467999999999998 88875   4578999999999964  6532   2469999999


Q ss_pred             CCCCCccchhhhCCCCccEEEccCCcCccCCCCCCcccceecc
Q 040119           83 GNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGIFL  125 (366)
Q Consensus        83 ~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L~~  125 (366)
                      +|.+..+|. ++.+++|+.|++++|.+. ..|..+..+..+.+
T Consensus       107 ~n~l~~lp~-~~~l~~L~~L~l~~~~~~-~~~~~~~~l~~l~~  147 (353)
T d1jl5a_         107 NNQLEKLPE-LQNSSFLKIIDVDNNSLK-KLPDLPPSLEFIAA  147 (353)
T ss_dssp             SSCCSSCCC-CTTCTTCCEEECCSSCCS-CCCCCCTTCCEEEC
T ss_pred             ccccccccc-hhhhccceeecccccccc-ccccccccccchhh
Confidence            999999995 688999999999999854 35555555555543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=98.69  E-value=9.2e-08  Score=87.74  Aligned_cols=66  Identities=27%  Similarity=0.378  Sum_probs=29.0

Q ss_pred             CCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccEEEccCCcCccCCCCCCccccee
Q 040119           49 CSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSKIFLKDCKMLQNLPRLPASIHGI  123 (366)
Q Consensus        49 ~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~L~L~~n~~l~~lp~lp~~L~~L  123 (366)
                      ++|++|+|++|++..  +|..   +++|+.|+|++|+|+.+|..   +++|+.|++++|+ ++.+|.+|.+|+.|
T Consensus       284 ~~L~~L~Ls~N~l~~--lp~~---~~~L~~L~L~~N~L~~l~~~---~~~L~~L~L~~N~-L~~lp~~~~~L~~L  349 (353)
T d1jl5a_         284 PSLEELNVSNNKLIE--LPAL---PPRLERLIASFNHLAEVPEL---PQNLKQLHVEYNP-LREFPDIPESVEDL  349 (353)
T ss_dssp             TTCCEEECCSSCCSC--CCCC---CTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSC-CSSCCCCCTTCCEE
T ss_pred             CCCCEEECCCCccCc--cccc---cCCCCEEECCCCcCCccccc---cCCCCEEECcCCc-CCCCCccccccCee
Confidence            344444554444432  4432   23444444444444444432   2344444444444 33444444444433

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=98.62  E-value=1.7e-10  Score=100.58  Aligned_cols=104  Identities=22%  Similarity=0.227  Sum_probs=72.8

Q ss_pred             CCCCCccEEECcCCCCCCCCCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCCCCCccchhhhCCCCccE
Q 040119           22 FLPFPINLMRWSSDPMALSLPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGNNFFTLPASIYRLSKLSK  101 (366)
Q Consensus        22 ~~~~~L~~L~ls~n~l~~~lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N~~~~lP~~i~~L~~L~~  101 (366)
                      ..+.+|+.|++++|.+. .++. +..+++|+.|+|++|.+.+  +|..+..+.+|+.|++++|.++.++ .+.++++|+.
T Consensus        45 ~~L~~L~~L~Ls~n~I~-~i~~-l~~l~~L~~L~Ls~N~i~~--i~~~~~~~~~L~~L~l~~N~i~~l~-~~~~l~~L~~  119 (198)
T d1m9la_          45 STLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIKK--IENLDAVADTLEELWISYNQIASLS-GIEKLVNLRV  119 (198)
T ss_dssp             HHTTTCCEEECSEEEES-CCCC-HHHHTTCCEEECCEEEECS--CSSHHHHHHHCCEEECSEEECCCHH-HHHHHHHSSE
T ss_pred             hcccccceeECcccCCC-Cccc-ccCCccccChhhccccccc--ccccccccccccccccccccccccc-cccccccccc
Confidence            34567888888888886 5653 7788888888888888854  7765555667888888888888775 4777888888


Q ss_pred             EEccCCcCccCCCCCCcccceecccCCcCccEeeCC
Q 040119          102 IFLKDCKMLQNLPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus       102 L~L~~n~~l~~lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      |++++|++.. ++.+ ..     +.++++|+.|++.
T Consensus       120 L~L~~N~i~~-~~~~-~~-----l~~l~~L~~L~L~  148 (198)
T d1m9la_         120 LYMSNNKITN-WGEI-DK-----LAALDKLEDLLLA  148 (198)
T ss_dssp             EEESEEECCC-HHHH-HH-----HTTTTTCSEEEEC
T ss_pred             cccccchhcc-cccc-cc-----ccCCCccceeecC
Confidence            8888887431 1110 01     2366677777665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.3e-07  Score=83.07  Aligned_cols=108  Identities=18%  Similarity=0.042  Sum_probs=56.3

Q ss_pred             CCCccEEEeeCCCCCCCCCC--cCCCCCccEEECcCCCCCCCCCccCCCCC-CCcEEEeecCCCCCCCCCccCCCCCCCC
Q 040119            1 MKNLKELSFRGCKGSPSSAS--WFLPFPINLMRWSSDPMALSLPSSLSGLC-SLTKLDISYCDLGEGAIPSGIGNLCSLE   77 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~~--~~~~~~L~~L~ls~n~l~~~lP~sl~~L~-~L~~L~Ls~n~l~~~~lP~~i~~L~sL~   77 (366)
                      +++|++|++++|........  ...+..+..+...++.+...-+..+..++ .++.|++++|++..  ++.......++.
T Consensus       102 l~~L~~l~l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~--i~~~~~~~~~l~  179 (242)
T d1xwdc1         102 LPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE--IHNCAFNGTQLD  179 (242)
T ss_dssp             CTTCCEEEEESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE--ECTTTTTTCCEE
T ss_pred             cccccccccchhhhcccccccccccccccccccccccccccccccccccccccceeeecccccccc--cccccccchhhh
Confidence            35566666666653322111  11122344444444444422233344443 56666777776643  555544555544


Q ss_pred             EE-EccCCCCCccch-hhhCCCCccEEEccCCcCc
Q 040119           78 EL-HLSGNNFFTLPA-SIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        78 ~L-~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l  110 (366)
                      .+ ++.+|+++.+|. .+.++++|++|+|++|++.
T Consensus       180 ~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         180 ELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             EEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            44 355666777764 3566777777777777643

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=3.8e-08  Score=89.71  Aligned_cols=84  Identities=26%  Similarity=0.320  Sum_probs=57.8

Q ss_pred             CCccEEECcCCCCCCC-CCccCCCCCCCcEEEeecCCCCCCCCCccCCCCCCCCEEEccCC-CCC--ccchhhhCCCCcc
Q 040119           25 FPINLMRWSSDPMALS-LPSSLSGLCSLTKLDISYCDLGEGAIPSGIGNLCSLEELHLSGN-NFF--TLPASIYRLSKLS  100 (366)
Q Consensus        25 ~~L~~L~ls~n~l~~~-lP~sl~~L~~L~~L~Ls~n~l~~~~lP~~i~~L~sL~~L~Ls~N-~~~--~lP~~i~~L~~L~  100 (366)
                      ..|+.|+++++.+... ++..+..+++|+.|+|++|.+. +..+..++.+++|+.|+|+++ .++  .+..-...+++|+
T Consensus        46 ~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~  124 (284)
T d2astb2          46 FRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLS-DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD  124 (284)
T ss_dssp             BCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCC-HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCC
T ss_pred             CCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCC-cHHHHHHhcCCCCcCccccccccccccccchhhHHHHhcc
Confidence            4577888887776532 3444567788888888888776 556667777788888888774 555  2333345677888


Q ss_pred             EEEccCCcC
Q 040119          101 KIFLKDCKM  109 (366)
Q Consensus       101 ~L~L~~n~~  109 (366)
                      .|++++|..
T Consensus       125 ~L~ls~c~~  133 (284)
T d2astb2         125 ELNLSWCFD  133 (284)
T ss_dssp             EEECCCCTT
T ss_pred             ccccccccc
Confidence            888887753

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=2.4e-07  Score=84.23  Aligned_cols=110  Identities=18%  Similarity=0.196  Sum_probs=72.2

Q ss_pred             CCCccEEEeeCCCCCCCCC---CcCCCCCccEEECcCCC-CCC-CCCccCCC-CCCCcEEEeecCC--CCCCCCCccCCC
Q 040119            1 MKNLKELSFRGCKGSPSSA---SWFLPFPINLMRWSSDP-MAL-SLPSSLSG-LCSLTKLDISYCD--LGEGAIPSGIGN   72 (366)
Q Consensus         1 L~~L~~L~Ls~n~~~~~~~---~~~~~~~L~~L~ls~n~-l~~-~lP~sl~~-L~~L~~L~Ls~n~--l~~~~lP~~i~~   72 (366)
                      +++|++|+|++|.......   ....+++|+.|+++++. +.. .++..+.. .++|+.|++++|.  +.+..+......
T Consensus        94 ~~~L~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~  173 (284)
T d2astb2          94 NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR  173 (284)
T ss_dssp             CTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHH
T ss_pred             CCCCcCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccc
Confidence            4789999999986332111   12345789999999864 321 12222323 4689999998863  331123333456


Q ss_pred             CCCCCEEEccCCC-CC-ccchhhhCCCCccEEEccCCcCc
Q 040119           73 LCSLEELHLSGNN-FF-TLPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        73 L~sL~~L~Ls~N~-~~-~lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                      +++|++|+|++|. ++ ..+..+.++++|++|+|++|..+
T Consensus       174 ~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i  213 (284)
T d2astb2         174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDI  213 (284)
T ss_dssp             CTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTC
T ss_pred             cccccccccccccCCCchhhhhhcccCcCCEEECCCCCCC
Confidence            7889999998864 55 45667888999999999998633

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.94  E-value=5.5e-08  Score=81.40  Aligned_cols=92  Identities=17%  Similarity=0.152  Sum_probs=63.9

Q ss_pred             CccCCCCCCCcEEEeecCCCCCCCC---CccCCCCCCCCEEEccCCCCCccch-hhhCCCCccEEEccCCcCccCCCCCC
Q 040119           42 PSSLSGLCSLTKLDISYCDLGEGAI---PSGIGNLCSLEELHLSGNNFFTLPA-SIYRLSKLSKIFLKDCKMLQNLPRLP  117 (366)
Q Consensus        42 P~sl~~L~~L~~L~Ls~n~l~~~~l---P~~i~~L~sL~~L~Ls~N~~~~lP~-~i~~L~~L~~L~L~~n~~l~~lp~lp  117 (366)
                      +.....+++|+.|+|++|+|+.  +   +..+..+++|+.|+|++|.|+.+++ .......|+.|++++|++.......+
T Consensus        58 ~~~~~~~~~L~~L~Ls~N~i~~--l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~  135 (162)
T d1koha1          58 RIIEENIPELLSLNLSNNRLYR--LDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQS  135 (162)
T ss_dssp             HHHHHHCTTCCCCCCCSSCCCC--CSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHH
T ss_pred             HHHHHhCCCCCEeeCCCccccC--CchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccch
Confidence            3334568899999999999974  4   3456789999999999999998875 23344579999999999664332211


Q ss_pred             cccceecccCCcCccEeeC
Q 040119          118 ASIHGIFLDGCVSLETLSD  136 (366)
Q Consensus       118 ~~L~~L~~~~c~sL~~l~~  136 (366)
                       ..+...+..+++|+.|+-
T Consensus       136 -~y~~~i~~~~P~L~~LDg  153 (162)
T d1koha1         136 -TYISAIRERFPKLLRLDG  153 (162)
T ss_dssp             -HHHHHHHTTSTTCCEETT
T ss_pred             -hHHHHHHHHCCCCCEECc
Confidence             111112346777877763

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=4.5e-07  Score=85.69  Aligned_cols=109  Identities=17%  Similarity=0.253  Sum_probs=78.4

Q ss_pred             CCccEEEeeCCCCCCC--CCCcCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCccCCC
Q 040119            2 KNLKELSFRGCKGSPS--SASWFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPSGIGN   72 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~--~~~~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~~i~~   72 (366)
                      ++|+.|||++|+....  ......+.+++.|+|++|.++.    .++..+..+++|+.|+|++|.+++.   .+...+..
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            4789999999985532  1112334678999999998863    3455567889999999999988420   12233322


Q ss_pred             -CCCCCEEEccCCCCCc-----cchhhhCCCCccEEEccCCcCc
Q 040119           73 -LCSLEELHLSGNNFFT-----LPASIYRLSKLSKIFLKDCKML  110 (366)
Q Consensus        73 -L~sL~~L~Ls~N~~~~-----lP~~i~~L~~L~~L~L~~n~~l  110 (366)
                       ..+|+.|+|++|.++.     ++..+..+++|+.|+|++|.+.
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence             3479999999999873     5667888999999999998753

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.80  E-value=2.5e-06  Score=78.87  Aligned_cols=108  Identities=14%  Similarity=0.106  Sum_probs=65.2

Q ss_pred             CCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCCCC-----CCccCCCCCCCcEEEeecCCCCCC---CCCc
Q 040119            2 KNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMALS-----LPSSLSGLCSLTKLDISYCDLGEG---AIPS   68 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~~~-----lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~   68 (366)
                      +.|+.|++++|.......     .......|+.|+++.|.+...     +...+..+++|+.|+|++|.+...   .+..
T Consensus       158 ~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~  237 (344)
T d2ca6a1         158 PPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI  237 (344)
T ss_dssp             CCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH
T ss_pred             cccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccccccccccccc
Confidence            467777777776332110     012235577888888877531     233456677788888888876410   1334


Q ss_pred             cCCCCCCCCEEEccCCCCCc-----cchhhhCC--CCccEEEccCCcC
Q 040119           69 GIGNLCSLEELHLSGNNFFT-----LPASIYRL--SKLSKIFLKDCKM  109 (366)
Q Consensus        69 ~i~~L~sL~~L~Ls~N~~~~-----lP~~i~~L--~~L~~L~L~~n~~  109 (366)
                      .+...++|++|+|++|.|..     +-..+...  ..|+.|++++|++
T Consensus       238 ~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i  285 (344)
T d2ca6a1         238 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEI  285 (344)
T ss_dssp             HGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCC
T ss_pred             cccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcC
Confidence            55667778888888887762     22334433  4678888888774

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.45  E-value=4.7e-06  Score=78.44  Aligned_cols=107  Identities=19%  Similarity=0.238  Sum_probs=72.0

Q ss_pred             CccEEECcCCCCCCC-CCccCCCCCCCcEEEeecCCCCCC---CCCccCCCCCCCCEEEccCCCCCc-----cchhhhC-
Q 040119           26 PINLMRWSSDPMALS-LPSSLSGLCSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNFFT-----LPASIYR-   95 (366)
Q Consensus        26 ~L~~L~ls~n~l~~~-lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~~i~~-   95 (366)
                      .|+.|++++|.++.. +..-+..+++|++|+|++|.+++.   .++..+..+++|++|+|++|.|+.     +...+.. 
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            589999999999752 123345678999999999998621   235567789999999999999862     2233322 


Q ss_pred             CCCccEEEccCCcCccC-CCCCCcccceecccCCcCccEeeCC
Q 040119           96 LSKLSKIFLKDCKMLQN-LPRLPASIHGIFLDGCVSLETLSDG  137 (366)
Q Consensus        96 L~~L~~L~L~~n~~l~~-lp~lp~~L~~L~~~~c~sL~~l~~~  137 (366)
                      ..+|+.|+|++|++... +..++..+.     .+++|+.++++
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~-----~~~~L~~L~L~  120 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLR-----TLPTLQELHLS  120 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTT-----SCTTCCEEECC
T ss_pred             CCCCCEEECCCCCccccccccccchhh-----ccccccccccc
Confidence            35799999999986431 011122222     55666666654

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=7.7e-06  Score=67.83  Aligned_cols=77  Identities=23%  Similarity=0.139  Sum_probs=58.7

Q ss_pred             CCCccEEECcCCCCCCCC---CccCCCCCCCcEEEeecCCCCCCCCCc-cCCCCCCCCEEEccCCCCCccc--------h
Q 040119           24 PFPINLMRWSSDPMALSL---PSSLSGLCSLTKLDISYCDLGEGAIPS-GIGNLCSLEELHLSGNNFFTLP--------A   91 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~~l---P~sl~~L~~L~~L~Ls~n~l~~~~lP~-~i~~L~sL~~L~Ls~N~~~~lP--------~   91 (366)
                      ++.|+.|++++|.+. .+   +..+..+++|+.|+|++|.+.+  +++ .......|+.|+|++|.+....        .
T Consensus        64 ~~~L~~L~Ls~N~i~-~l~~~~~~~~~l~~L~~L~Ls~N~i~~--l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~  140 (162)
T d1koha1          64 IPELLSLNLSNNRLY-RLDDMSSIVQKAPNLKILNLSGNELKS--ERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISA  140 (162)
T ss_dssp             CTTCCCCCCCSSCCC-CCSGGGTHHHHSTTCCCCCCTTSCCCC--GGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHH
T ss_pred             CCCCCEeeCCCcccc-CCchhHHHHhhCCcccccccccCcccc--chhhhhhhccccceeecCCCCcCcCcccchhHHHH
Confidence            456999999999997 44   3445679999999999999974  654 2233457999999999998432        2


Q ss_pred             hhhCCCCccEEE
Q 040119           92 SIYRLSKLSKIF  103 (366)
Q Consensus        92 ~i~~L~~L~~L~  103 (366)
                      -+..+++|+.||
T Consensus       141 i~~~~P~L~~LD  152 (162)
T d1koha1         141 IRERFPKLLRLD  152 (162)
T ss_dssp             HHTTSTTCCEET
T ss_pred             HHHHCCCCCEEC
Confidence            256788999886

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=97.33  E-value=1.5e-05  Score=73.54  Aligned_cols=108  Identities=11%  Similarity=0.088  Sum_probs=58.2

Q ss_pred             CCccEEEeeCCCCCCCCC-----CcCCCCCccEEECcCCCCCCCCC----c---------cCCCCCCCcEEEeecCCCCC
Q 040119            2 KNLKELSFRGCKGSPSSA-----SWFLPFPINLMRWSSDPMALSLP----S---------SLSGLCSLTKLDISYCDLGE   63 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~~-----~~~~~~~L~~L~ls~n~l~~~lP----~---------sl~~L~~L~~L~Ls~n~l~~   63 (366)
                      ++|+.|+|++|.+.....     .....++|+.|++++|.+...-.    .         .....+.|+.|++++|.+..
T Consensus        93 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~  172 (344)
T d2ca6a1          93 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLEN  172 (344)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTG
T ss_pred             CCcccccccccccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccc
Confidence            578888888886433211     12245667888887776531100    0         01234556666666666542


Q ss_pred             CC---CCccCCCCCCCCEEEccCCCCCc------cchhhhCCCCccEEEccCCcC
Q 040119           64 GA---IPSGIGNLCSLEELHLSGNNFFT------LPASIYRLSKLSKIFLKDCKM  109 (366)
Q Consensus        64 ~~---lP~~i~~L~sL~~L~Ls~N~~~~------lP~~i~~L~~L~~L~L~~n~~  109 (366)
                      ..   +...+.....|+.|+|++|.|..      +...+..+++|+.|+|++|.+
T Consensus       173 ~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i  227 (344)
T d2ca6a1         173 GSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF  227 (344)
T ss_dssp             GGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCC
T ss_pred             cccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhcccccccccc
Confidence            11   12233445566666666666652      223455566666666666653

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.71  E-value=0.00019  Score=59.26  Aligned_cols=84  Identities=12%  Similarity=0.090  Sum_probs=47.1

Q ss_pred             CCccEEECcCC-CCCC----CCCccCCCCCCCcEEEeecCCCCCC---CCCccCCCCCCCCEEEccCCCCCc-----cch
Q 040119           25 FPINLMRWSSD-PMAL----SLPSSLSGLCSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNFFT-----LPA   91 (366)
Q Consensus        25 ~~L~~L~ls~n-~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~~-----lP~   91 (366)
                      +.|+.|+|+++ .+..    .+-..+...++|+.|+|++|.+.+.   .+...+...++|+.|+|++|.|..     +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            44666666543 3332    1223355566677777777766410   112334445667777777777762     334


Q ss_pred             hhhCCCCccEEEccCCc
Q 040119           92 SIYRLSKLSKIFLKDCK  108 (366)
Q Consensus        92 ~i~~L~~L~~L~L~~n~  108 (366)
                      .+..-+.|+.|++++|.
T Consensus        95 aL~~n~sL~~L~l~~n~  111 (167)
T d1pgva_          95 STLVTQSIVEFKADNQR  111 (167)
T ss_dssp             HTTTTCCCSEEECCCCS
T ss_pred             HHHhCCcCCEEECCCCc
Confidence            55566677777777665

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=96.18  E-value=0.00064  Score=55.97  Aligned_cols=106  Identities=14%  Similarity=0.043  Sum_probs=62.2

Q ss_pred             CCccEEEeeCCCCCCCC------CCcCCCCCccEEECcCCCCCC----CCCccCCCCCCCcEEEeecCCCCCCC---CCc
Q 040119            2 KNLKELSFRGCKGSPSS------ASWFLPFPINLMRWSSDPMAL----SLPSSLSGLCSLTKLDISYCDLGEGA---IPS   68 (366)
Q Consensus         2 ~~L~~L~Ls~n~~~~~~------~~~~~~~~L~~L~ls~n~l~~----~lP~sl~~L~~L~~L~Ls~n~l~~~~---lP~   68 (366)
                      ++|+.|+|++++.....      ........|+.|++++|.+..    .+...+...+.|+.|+|++|.+....   +-.
T Consensus        15 ~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~~   94 (167)
T d1pgva_          15 TDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLR   94 (167)
T ss_dssp             SSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHH
T ss_pred             CCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHHH
Confidence            56788888765421111      112233557888888887753    22233445667888888888775211   223


Q ss_pred             cCCCCCCCCEEEccCCCCCcc--------chhhhCCCCccEEEccCC
Q 040119           69 GIGNLCSLEELHLSGNNFFTL--------PASIYRLSKLSKIFLKDC  107 (366)
Q Consensus        69 ~i~~L~sL~~L~Ls~N~~~~l--------P~~i~~L~~L~~L~L~~n  107 (366)
                      .+..-++|++|+|++|.+..+        ...+..-+.|+.|+++.+
T Consensus        95 aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          95 STLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             HTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             HHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            456667788888887765532        334455566777776554

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.36  E-value=0.0011  Score=54.11  Aligned_cols=61  Identities=15%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             CCCCCCCcEEEeecCCCCCC---CCCccCCCCCCCCEEEccCCCCC-----ccchhhhCCCCccEEEcc
Q 040119           45 LSGLCSLTKLDISYCDLGEG---AIPSGIGNLCSLEELHLSGNNFF-----TLPASIYRLSKLSKIFLK  105 (366)
Q Consensus        45 l~~L~~L~~L~Ls~n~l~~~---~lP~~i~~L~sL~~L~Ls~N~~~-----~lP~~i~~L~~L~~L~L~  105 (366)
                      +...++|+.|+|++|.+...   .+-..+...++|+.|++++|.+.     .+-..+...+.|+.++|.
T Consensus        42 l~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~  110 (166)
T d1io0a_          42 LKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRID  110 (166)
T ss_dssp             HTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECC
T ss_pred             HhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeec
Confidence            44555666666666655310   01122334455666666666554     223445555566655544

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=93.07  E-value=0.012  Score=47.63  Aligned_cols=84  Identities=12%  Similarity=0.041  Sum_probs=41.4

Q ss_pred             CCCccEEECcCCCCCCC----CCccCCCCCCCcEEEeecCCCCCCC---CCccCCCCCCCCEEEc--cCCCCC-----cc
Q 040119           24 PFPINLMRWSSDPMALS----LPSSLSGLCSLTKLDISYCDLGEGA---IPSGIGNLCSLEELHL--SGNNFF-----TL   89 (366)
Q Consensus        24 ~~~L~~L~ls~n~l~~~----lP~sl~~L~~L~~L~Ls~n~l~~~~---lP~~i~~L~sL~~L~L--s~N~~~-----~l   89 (366)
                      .+.|+.|++++|.+...    +-..+...++|+.|++++|.+....   +-..+...++|+.++|  ++|.+.     .+
T Consensus        45 n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~L  124 (166)
T d1io0a_          45 NTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEI  124 (166)
T ss_dssp             CCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHH
T ss_pred             CCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHH
Confidence            34566666666655431    2222344556666666666654100   1233445555665444  344443     23


Q ss_pred             chhhhCCCCccEEEccCC
Q 040119           90 PASIYRLSKLSKIFLKDC  107 (366)
Q Consensus        90 P~~i~~L~~L~~L~L~~n  107 (366)
                      ...+...+.|+.|++..+
T Consensus       125 a~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_         125 ANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             HHHHHHCSSCCEEECCCS
T ss_pred             HHHHHhCCCcCEEeCcCC
Confidence            444555566666665544