Citrus Sinensis ID: 040125

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510----
MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLKRTISVADSIAGDGSPTSTLSRSSSSSSLSNLPRLQFRDHIWTYTQRYLAAEAVEEAAAAMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
cccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHcccHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccHHHHHHHHHcccccccEEEEEEEccccHHHHHHHHHHHHHHHHHccccEEEEEccccccccccccccccccEEEEEEcccccccHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHccccccccccHHHHHHHHHHcccccccEEEEEccEEEEEEcccEEEEEEEccc
ccEHHHEccccccccccccccccccccccHHHccccccccccccccHHHcccccccccccccccccccccccccccccccccccHHHHHcccccccccccccccHccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccHHcccccccHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccEEEEEEcccccccccccHHHHHHHHHHccccccccEEEEEccccccHHHHHHHHHHHHHHHHccccEEEcHHHHcHccccHHHcccccccEEEEEHHHHHHHcccccccHHHHHHHHHHHccccEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHEcccHHHcccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHcccccEEEEcccEEEEcccccEEEEEEcccc
MVYDFLFNTHKlyndqrsnqaIGLQLGLsivdcypylpmmsdnsaassmmlqprdqkrlKRTISVadsiagdgsptstlsrsssssslsnlprlqfrdHIWTYTQRYLAAEAVEEAAAAMTKAvdgcggdqqdgtaDGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLasvqplgavgsfapsmnimdiagsrEKEEAFRLVYEIcphiqfghfvanssileafegesfVHVVDLgmtlglprgQQWRRLIESLAnragqpprrlRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNlenlqtkdikVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEqdsshngpffLGRFMEALHYYSAIFDSLdamlpkydtkRAKIEQFYFAEEIKNIVscegparverHERVDQWRRRMsragfqaaPMKMINQAQKWLknnkvcegytvveekgclvlgwkskpiiatscwkc
MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLKRTISVadsiagdgsptstlsrsssssslsnlprlQFRDHIWTYTQRYLAAEAVEEAAAAMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESlanragqpprrlRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKnivscegparverhervdqWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEekgclvlgwkskpiiatscwkc
MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPmmsdnsaassmmLQPRDQKRLKRTISVADSIAGDGsptstlsrsssssslsnlprlQFRDHIWTYTQRYLaaeaveeaaaaMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
*VYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPM*****************************************************RLQFRDHIWTYTQRYLAAEAVEEAAAAMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCW**
***DFL****************************************************************************************************************************************QLLIACAEAVACRDKSHASALLSELRANALV*GSSFQRVASCFVQGLADRLASVQPLGA**************GSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANR*GQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLKRTISVADSIA********************LPRLQFRDHIWTYTQRYLAAEAVEEAAAAMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAA**************************************SSSLSNLPRLQFRD**************************************DGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
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MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLKRTISVADSIAGDGSPTSTLSRSSSSSSLSNLPRLQFRDHIWTYTQRYLAAEAVEEAAAAMTKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query514 2.2.26 [Sep-21-2011]
Q8S4W7590 DELLA protein GAI1 OS=Vit no no 0.704 0.613 0.362 1e-66
Q9C8Y3511 DELLA protein RGL1 OS=Ara yes no 0.696 0.700 0.368 4e-66
Q5BN22579 DELLA protein RGA2 OS=Bra N/A no 0.700 0.621 0.374 5e-66
Q9LQT8533 DELLA protein GAI OS=Arab no no 0.700 0.675 0.371 5e-66
Q5BN23573 DELLA protein RGA1 OS=Bra N/A no 0.700 0.628 0.366 1e-64
Q9SLH3587 DELLA protein RGA OS=Arab no no 0.700 0.613 0.356 5e-64
Q9ST48630 DELLA protein DWARF8 OS=Z N/A no 0.749 0.611 0.358 6e-63
Q7Y1B6588 DELLA protein GAI OS=Sola N/A no 0.704 0.615 0.357 3e-62
Q9LF53523 DELLA protein RGL3 OS=Ara no no 0.688 0.676 0.371 7e-62
Q84TQ7537 DELLA protein GAI OS=Goss N/A no 0.694 0.664 0.374 8e-62
>sp|Q8S4W7|GAI1_VITVI DELLA protein GAI1 OS=Vitis vinifera GN=GAI1 PE=2 SV=1 Back     alignment and function desciption
 Score =  254 bits (648), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 141/389 (36%), Positives = 218/389 (56%), Gaps = 27/389 (6%)

Query: 133 DGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADR 192
           D    G+RLV  L+ACAEAV   +   A AL+ ++   A+    + ++VA+ F +GLA R
Sbjct: 206 DSQETGIRLVHTLMACAEAVQQENLKLAEALVKQIGFLAVSQAGAMRKVATYFAEGLARR 265

Query: 193 LASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGE 252
           +  + P   + S     +  DI             YE CP+++F HF AN +ILEAFEG+
Sbjct: 266 IYRLYPDKPLDS-----SFSDILQMH--------FYETCPYLKFAHFTANQAILEAFEGK 312

Query: 253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLC----VEKFQSIGDE 308
             VHV+D  M     +G QW  L+++LA R G PP   R+T +G       +    +G +
Sbjct: 313 KRVHVIDFSMK----QGMQWPALMQALALRPGGPPS-FRLTGIGPPSTDNTDHLHEVGWK 367

Query: 309 LKDYAKTYGINLEF-SVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNSV 367
           L   A+T  +  E+   V ++L +L    +++ + E + VNS+ +LH ++    G +  V
Sbjct: 368 LAQLAETIHVEFEYRGFVANSLADLDASMLELRDGESVAVNSVFELHSLLARP-GGIERV 426

Query: 368 LQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAM-LPKYDTKRAKIE 426
           L  + ++ P ++ +VEQ+++HNGP FL RF E+LHYYS +FDSL+   +   +T+   + 
Sbjct: 427 LSAVKDMKPDIVTIVEQEANHNGPVFLDRFTESLHYYSTLFDSLEGCGVSPVNTQDKLMS 486

Query: 427 QFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM--KMINQAQKWLKNNKV 484
           + Y  ++I N+V+CEGP RVERHE + QWR R+  AGF    +      QA   L     
Sbjct: 487 EVYLGQQICNVVACEGPERVERHETLAQWRARLGSAGFDPVNLGSNAFKQASMLLALFAG 546

Query: 485 CEGYTVVEEKGCLVLGWKSKPIIATSCWK 513
            +GY V E  GCL+LGW ++P+IATS W+
Sbjct: 547 GDGYRVEENNGCLMLGWHTRPLIATSAWQ 575
Probable transcriptional regulator that acts as a repressor of the gibberellin (GA) signaling pathway. Probably acts by participating in large multiprotein complexes that repress transcription of GA-inducible genes. Upon GA application, it is degraded by the proteasome, allowing the GA signaling pathway.
Vitis vinifera (taxid: 29760)
>sp|Q9C8Y3|RGL1_ARATH DELLA protein RGL1 OS=Arabidopsis thaliana GN=RGL1 PE=1 SV=1 Back     alignment and function description
>sp|Q5BN22|RGA2_BRACM DELLA protein RGA2 OS=Brassica campestris GN=RGA2 PE=3 SV=1 Back     alignment and function description
>sp|Q9LQT8|GAI_ARATH DELLA protein GAI OS=Arabidopsis thaliana GN=GAI PE=1 SV=1 Back     alignment and function description
>sp|Q5BN23|RGA1_BRACM DELLA protein RGA1 OS=Brassica campestris GN=RGA1 PE=1 SV=1 Back     alignment and function description
>sp|Q9SLH3|RGA_ARATH DELLA protein RGA OS=Arabidopsis thaliana GN=RGA PE=1 SV=1 Back     alignment and function description
>sp|Q9ST48|DWRF8_MAIZE DELLA protein DWARF8 OS=Zea mays GN=D8 PE=1 SV=1 Back     alignment and function description
>sp|Q7Y1B6|GAI_SOLLC DELLA protein GAI OS=Solanum lycopersicum GN=GAI PE=2 SV=1 Back     alignment and function description
>sp|Q9LF53|RGL3_ARATH DELLA protein RGL3 OS=Arabidopsis thaliana GN=RGL3 PE=1 SV=1 Back     alignment and function description
>sp|Q84TQ7|GAI_GOSHI DELLA protein GAI OS=Gossypium hirsutum GN=GAI PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
262283773509 GRAS family transcription factor [Citrus 0.990 1.0 0.970 0.0
224136051523 GRAS family transcription factor [Populu 0.988 0.971 0.743 0.0
255540361526 DELLA protein RGL1, putative [Ricinus co 0.970 0.948 0.738 0.0
224121910516 GRAS family transcription factor [Populu 0.988 0.984 0.741 0.0
225457448519 PREDICTED: DELLA protein GAI1 [Vitis vin 0.972 0.963 0.731 0.0
356513939511 PREDICTED: DELLA protein GAI1-like [Glyc 0.908 0.913 0.711 0.0
356565266514 PREDICTED: DELLA protein RGL1-like [Glyc 0.918 0.918 0.718 0.0
357477195521 GRAS family transcription factor [Medica 0.945 0.932 0.690 0.0
297733612491 unnamed protein product [Vitis vinifera] 0.918 0.961 0.693 0.0
225425918530 PREDICTED: DELLA protein GAI1 [Vitis vin 0.988 0.958 0.640 0.0
>gi|262283773|gb|ACY40694.1| GRAS family transcription factor [Citrus trifoliata] Back     alignment and taxonomy information
 Score =  975 bits (2521), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 499/514 (97%), Positives = 505/514 (98%), Gaps = 5/514 (0%)

Query: 1   MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLK 60
           MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSM+LQPRDQKRLK
Sbjct: 1   MVYDFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMILQPRDQKRLK 60

Query: 61  RTISVADSIAGDGSPTSTLSRSSSSSSLSNLPRLQFRDHIWTYTQRYLAAEAVEEAAAAM 120
           RTISV     GDGSPTSTLSRSSS+SSLSNLPRLQFRDHIWTYT+RYLAAEAVEEAAAAM
Sbjct: 61  RTISV-----GDGSPTSTLSRSSSTSSLSNLPRLQFRDHIWTYTRRYLAAEAVEEAAAAM 115

Query: 121 TKAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQR 180
            K+ DGC GDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQR
Sbjct: 116 IKSEDGCDGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQR 175

Query: 181 VASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFV 240
           VASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFV
Sbjct: 176 VASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFV 235

Query: 241 ANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVE 300
           ANSSILEAFEGES VHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVE
Sbjct: 236 ANSSILEAFEGESLVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVE 295

Query: 301 KFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKES 360
           KFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKES
Sbjct: 296 KFQSIGDELKDYAKTYGINLEFSVVESNLENLQTKDIKVLENEVLVVNSILQLHCVVKES 355

Query: 361 RGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 420
           RGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT
Sbjct: 356 RGALNSVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDT 415

Query: 421 KRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKWLK 480
           KRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAP+KMINQAQKWLK
Sbjct: 416 KRAKIEQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPIKMINQAQKWLK 475

Query: 481 NNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWKC 514
           NNKVCEGYTVVEEKGCLVLGWKSKPIIAT+CWKC
Sbjct: 476 NNKVCEGYTVVEEKGCLVLGWKSKPIIATTCWKC 509

Source: Citrus trifoliata

Species: Citrus trifoliata

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224136051|ref|XP_002322227.1| GRAS family transcription factor [Populus trichocarpa] gi|222869223|gb|EEF06354.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255540361|ref|XP_002511245.1| DELLA protein RGL1, putative [Ricinus communis] gi|223550360|gb|EEF51847.1| DELLA protein RGL1, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224121910|ref|XP_002318703.1| GRAS family transcription factor [Populus trichocarpa] gi|222859376|gb|EEE96923.1| GRAS family transcription factor [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225457448|ref|XP_002263040.1| PREDICTED: DELLA protein GAI1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356513939|ref|XP_003525665.1| PREDICTED: DELLA protein GAI1-like [Glycine max] Back     alignment and taxonomy information
>gi|356565266|ref|XP_003550863.1| PREDICTED: DELLA protein RGL1-like [Glycine max] Back     alignment and taxonomy information
>gi|357477195|ref|XP_003608883.1| GRAS family transcription factor [Medicago truncatula] gi|355509938|gb|AES91080.1| GRAS family transcription factor [Medicago truncatula] Back     alignment and taxonomy information
>gi|297733612|emb|CBI14859.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225425918|ref|XP_002267538.1| PREDICTED: DELLA protein GAI1 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query514
TAIR|locus:2006747533 GAI "GIBBERELLIC ACID INSENSIT 0.700 0.675 0.374 2.1e-61
TAIR|locus:2201557511 RGL1 "RGA-like 1" [Arabidopsis 0.698 0.702 0.376 9e-61
TAIR|locus:2005516587 RGA1 "REPRESSOR OF GA1-3 1" [A 0.700 0.613 0.361 1e-59
TAIR|locus:2008086482 SCL3 "AT1G50420" [Arabidopsis 0.299 0.319 0.426 1.4e-58
TAIR|locus:2157477523 RGL3 "RGA-like protein 3" [Ara 0.688 0.676 0.371 5.1e-58
TAIR|locus:2099624547 RGL2 "RGA-like 2" [Arabidopsis 0.706 0.663 0.359 2.2e-57
TAIR|locus:2164783490 PAT1 "AT5G48150" [Arabidopsis 0.696 0.730 0.345 4.8e-55
TAIR|locus:2080345653 SCR "SCARECROW" [Arabidopsis t 0.717 0.565 0.360 4.8e-55
TAIR|locus:2026982593 SCL1 "AT1G21450" [Arabidopsis 0.696 0.603 0.355 4.9e-53
TAIR|locus:2044973413 SCL21 "AT2G04890" [Arabidopsis 0.686 0.854 0.349 3.1e-51
TAIR|locus:2006747 GAI "GIBBERELLIC ACID INSENSITIVE" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 146/390 (37%), Positives = 227/390 (58%)

Query:   133 DGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADR 192
             D   +G+RLV  L+ACAEAV   + + A AL+ ++   A+    + ++VA+ F + LA R
Sbjct:   161 DSQENGVRLVHALLACAEAVQKENLTVAEALVKQIGFLAVSQIGAMRKVATYFAEALARR 220

Query:   193 LASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGE 252
             +  +         +PS + +D + S   +  F   YE CP+++F HF AN +ILEAF+G+
Sbjct:   221 IYRL---------SPSQSPIDHSLSDTLQMHF---YETCPYLKFAHFTANQAILEAFQGK 268

Query:   253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGL-CVEKFQ---SIGDE 308
               VHV+D  M+ GL    QW  L+++LA R G PP   R+T +G    + F     +G +
Sbjct:   269 KRVHVIDFSMSQGL----QWPALMQALALRPGGPPV-FRLTGIGPPAPDNFDYLHEVGCK 323

Query:   309 LKDYAKTYGINLEF-SVVESNLENLQTKDIKVLENEV--LVVNSILQLHCVVKESRGALN 365
             L   A+   +  E+   V + L +L    +++  +E+  + VNS+ +LH ++    GA++
Sbjct:   324 LAHLAEAIHVEFEYRGFVANTLADLDASMLELRPSEIESVAVNSVFELHKLLGRP-GAID 382

Query:   366 SVLQIIHELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKI 425
              VL +++++ P++  +VEQ+S+HN P FL RF E+LHYYS +FDSL+ + P    K   +
Sbjct:   383 KVLGVVNQIKPEIFTVVEQESNHNSPIFLDRFTESLHYYSTLFDSLEGV-PSGQDK--VM 439

Query:   426 EQFYFAEEIKNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM--KMINQAQKWLKNNK 483
              + Y  ++I N+V+C+GP RVERHE + QWR R   AGF AA +      QA   L    
Sbjct:   440 SEVYLGKQICNVVACDGPDRVERHETLSQWRNRFGSAGFAAAHIGSNAFKQASMLLALFN 499

Query:   484 VCEGYTVVEEKGCLVLGWKSKPIIATSCWK 513
               EGY V E  GCL+LGW ++P+IATS WK
Sbjct:   500 GGEGYRVEESDGCLMLGWHTRPLIATSAWK 529
GO:0005634 "nucleus" evidence=ISM;ISS;IDA;TAS
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS
GO:0009740 "gibberellic acid mediated signaling pathway" evidence=RCA;TAS
GO:0009938 "negative regulation of gibberellic acid mediated signaling pathway" evidence=IMP;TAS
GO:0005515 "protein binding" evidence=IPI
GO:0010233 "phloem transport" evidence=IMP
GO:0009651 "response to salt stress" evidence=IGI
GO:0009723 "response to ethylene stimulus" evidence=IGI;RCA
GO:0009737 "response to abscisic acid stimulus" evidence=IGI;RCA
GO:0042538 "hyperosmotic salinity response" evidence=IGI;RCA
GO:0010029 "regulation of seed germination" evidence=IGI
GO:2000033 "regulation of seed dormancy process" evidence=IGI
GO:0009739 "response to gibberellin stimulus" evidence=IEP
GO:0010187 "negative regulation of seed germination" evidence=IGI
GO:0010218 "response to far red light" evidence=IEP
GO:2000377 "regulation of reactive oxygen species metabolic process" evidence=IGI
GO:0009863 "salicylic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009867 "jasmonic acid mediated signaling pathway" evidence=IGI;RCA
GO:0009845 "seed germination" evidence=RCA
GO:0010162 "seed dormancy process" evidence=RCA
GO:0010325 "raffinose family oligosaccharide biosynthetic process" evidence=RCA
GO:0048444 "floral organ morphogenesis" evidence=RCA
GO:0006808 "regulation of nitrogen utilization" evidence=IMP
TAIR|locus:2201557 RGL1 "RGA-like 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2005516 RGA1 "REPRESSOR OF GA1-3 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2008086 SCL3 "AT1G50420" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2157477 RGL3 "RGA-like protein 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2099624 RGL2 "RGA-like 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164783 PAT1 "AT5G48150" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080345 SCR "SCARECROW" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2026982 SCL1 "AT1G21450" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2044973 SCL21 "AT2G04890" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
GSVIVG00010476001
SubName- Full=Chromosome chr17 scaffold_263, whole genome shotgun sequence; (519 aa)
(Vitis vinifera)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
pfam03514372 pfam03514, GRAS, GRAS family transcription factor 1e-127
>gnl|CDD|217595 pfam03514, GRAS, GRAS family transcription factor Back     alignment and domain information 
 Score =  375 bits (965), Expect = e-127
 Identities = 164/381 (43%), Positives = 231/381 (60%), Gaps = 17/381 (4%)

Query: 141 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLG 200
           LV LL+ACAEAV+  D S A A+L+ L   A   G   QR+A+ F + LA RLA      
Sbjct: 1   LVHLLLACAEAVSSGDLSLAQAILARLNQLASPAGDPMQRLAAYFTEALAARLARSGS-S 59

Query: 201 AVGSFAPSMNIMDIAGSREKEEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDL 260
              +  PS      + S E   A++L YE+ P+++FGHF AN +ILEAFEGE  VH++D 
Sbjct: 60  IYSALPPSP--STPSDSVEVLAAYKLFYEVSPYLKFGHFTANQAILEAFEGEERVHIIDF 117

Query: 261 GMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGL----CVEKFQSIGDELKDYAKTY 316
            +  GL    QW  LI++LA+R G PP  LRIT +G       E+ +  GD L  +A + 
Sbjct: 118 DIGQGL----QWPSLIQALASRPGGPPH-LRITGIGSPQFSSAEELEETGDRLAQFADSL 172

Query: 317 GINLEFSVVESN-LENLQTKDIKVLENEVLVVNSILQLHCVVKESRGALNS-VLQIIHEL 374
           G+  EF+ + +  LE+L  + + V   E L VN +  LH ++ ES    +   L+++  L
Sbjct: 173 GVPFEFNPLVAKRLEDLDLEMLDVRPGEALAVNCVFALHRLLDESVSLESPTFLRLVKSL 232

Query: 375 SPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEI 434
           +PKV+ LVEQ+++HN   FL RF+EALHYYSA+FDSL+A LP+   +R K+E+     EI
Sbjct: 233 NPKVVTLVEQEANHNSAPFLARFVEALHYYSALFDSLEATLPRDSEERRKVERELLGREI 292

Query: 435 KNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPM--KMINQAQKWLKNNKVCEGYTVVE 492
            N+V+CEG  RVERHE   +WR RM RAGF+  P+    + QA+  L+   V +GY V E
Sbjct: 293 VNVVACEGAERVERHETFGKWRERMRRAGFRPVPLSEFAVKQAKLLLRLYYV-DGYRVEE 351

Query: 493 EKGCLVLGWKSKPIIATSCWK 513
           + G LVLGWK +P++A S W+
Sbjct: 352 DNGSLVLGWKGRPLVAASAWR 372

Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable amino-terminus and a highly conserved carboxyl-terminus that contains five recognisable motifs. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction. Length = 372

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 514
PF03514374 GRAS: GRAS domain family; InterPro: IPR005202 Sequ 100.0
PRK15451247 tRNA cmo(5)U34 methyltransferase; Provisional 97.15
TIGR00740239 methyltransferase, putative. A simple BLAST search 96.21
TIGR02752231 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone me 95.51
PF01209233 Ubie_methyltran: ubiE/COQ5 methyltransferase famil 94.56
TIGR02716306 C20_methyl_CrtF C-20 methyltransferase BchU. Membe 92.66
PLN02233261 ubiquinone biosynthesis methyltransferase 92.65
PF12847112 Methyltransf_18: Methyltransferase domain; PDB: 3G 92.11
COG2226238 UbiE Methylase involved in ubiquinone/menaquinone 91.71
PRK06202232 hypothetical protein; Provisional 91.63
PF13489161 Methyltransf_23: Methyltransferase domain; PDB: 3J 91.22
PF13847152 Methyltransf_31: Methyltransferase domain; PDB: 3T 90.05
TIGR01934223 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis 86.72
PTZ00098263 phosphoethanolamine N-methyltransferase; Provision 86.2
PRK08317241 hypothetical protein; Provisional 85.17
PLN02336475 phosphoethanolamine N-methyltransferase 85.1
PF13649101 Methyltransf_25: Methyltransferase domain; PDB: 3B 84.9
PLN02585315 magnesium protoporphyrin IX methyltransferase 81.36
TIGR03438301 probable methyltransferase. This model represents 81.35
TIGR00477195 tehB tellurite resistance protein TehB. Part of a 81.1
PLN02336 475 phosphoethanolamine N-methyltransferase 80.82
PF02353273 CMAS: Mycolic acid cyclopropane synthetase; InterP 80.21
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs [] Back     alignment and domain information 
Probab=100.00  E-value=1.2e-108  Score=862.38  Aligned_cols=364  Identities=47%  Similarity=0.835  Sum_probs=335.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhccCCCCCchhhHHHHHHHHHHHhhhhcCCCCCCcCcCCCcchhhcccchhH
Q 040125          141 LVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRVASCFVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREK  220 (514)
Q Consensus       141 L~~LLl~CAeAV~~gd~~~A~~lL~~L~~~as~~Gd~~QRlA~yF~eAL~~Rl~~~~p~g~~~~~~~~~~~~~~~~~~~~  220 (514)
                      |+|||++||+||+.||.+.|+.+|++|++++||+|||+||||+||++||.+|+.+.+|. .....++..  .......++
T Consensus         1 L~~lLl~cA~Av~~~~~~~A~~lL~~l~~~as~~g~~~qRla~yF~eAL~~Rl~~~~~~-~~~~~~~~~--~~~~~~~~~   77 (374)
T PF03514_consen    1 LVQLLLACAEAVAAGDFARAQELLARLRQLASPTGDPMQRLAAYFAEALAARLSGSGPG-LYSALPPSS--PSPSESSEQ   77 (374)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhHHHHHhccCcc-cccCCCCcc--ccccchHHH
Confidence            68999999999999999999999999999999999999999999999999999986541 111111111  011113457


Q ss_pred             HHHHHHHHhhCCCccchhHhhhHHHHhhhcCCceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecC---
Q 040125          221 EEAFRLVYEICPHIQFGHFVANSSILEAFEGESFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGL---  297 (514)
Q Consensus       221 ~~A~~~f~e~sP~~kfahftANqAILEA~~g~~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~---  297 (514)
                      ..||++||++|||+||||||||||||||++|+++||||||||+    +|.|||+|||+||.|++||| +||||||++   
T Consensus        78 ~~a~~~~~~~~P~~~fa~~taNqaIleA~~g~~~vHIID~~i~----~G~QW~~LiqaLa~R~~gpp-~LrIT~i~~~~~  152 (374)
T PF03514_consen   78 LAAYQLFYELSPFLKFAHFTANQAILEAFEGERRVHIIDFGIG----FGVQWPSLIQALASRPGGPP-SLRITGIGPPNS  152 (374)
T ss_pred             HHHHHHHHHHhhHHhhhhhchhHHHHHHhccCcceEEEeccCC----cchHHHHHHHHHhcCCCCCC-eEEEEeccCCCC
Confidence            8999999999999999999999999999999999999999986    68999999999999999999 899999999   


Q ss_pred             -ChhHHHHHHHHHHHHHHhcCCceEEEee-cCCccccCcccccccCCcEEEEEeccccccccccccc---hHHHHHHHHH
Q 040125          298 -CVEKFQSIGDELKDYAKTYGINLEFSVV-ESNLENLQTKDIKVLENEVLVVNSILQLHCVVKESRG---ALNSVLQIIH  372 (514)
Q Consensus       298 -~~~~l~etg~rL~~fA~~lgvpFeF~~V-~~~lE~l~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~---~~~~~L~~Ir  372 (514)
                       +.+.+++||++|.+||+++||||||++| ..++|++++++|++++||+|||||+|+||||++++..   +++.||+.||
T Consensus       153 ~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~ir  232 (374)
T PF03514_consen  153 GSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDLDPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVIR  232 (374)
T ss_pred             CcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhCCHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHHH
Confidence             6789999999999999999999999995 6799999999999999999999999999999976543   5789999999


Q ss_pred             hcCCcEEEEEeecCCCCCCchHHHHHHHHHHHHHHHhhhhccCCCCCHHHHHHHHHHHHHHHhHhHhcCCCCccccccch
Q 040125          373 ELSPKVLVLVEQDSSHNGPFFLGRFMEALHYYSAIFDSLDAMLPKYDTKRAKIEQFYFAEEIKNIVSCEGPARVERHERV  452 (514)
Q Consensus       373 ~L~PkVvvlvE~ea~~nsp~F~~RF~EAL~yYsAlFDSLda~lp~~~~eR~~iE~~~lg~eI~NiVAcEG~~RvERhE~~  452 (514)
                      +|+|+|||++|+|+|||+|+|++||.|||+||+++|||||+++|+++++|..+|+.+||++|+|||||||.+|+||||++
T Consensus       233 ~L~P~vvv~~E~ea~~n~~~F~~RF~eal~yYsalfdsle~~~~~~~~~r~~~E~~~~~~eI~niVa~eg~~R~eR~e~~  312 (374)
T PF03514_consen  233 SLNPKVVVLVEQEADHNSPSFLERFREALHYYSALFDSLEACLPRDSEERLAVERLFFGREIMNIVACEGEERVERHERL  312 (374)
T ss_pred             hcCCCEEEEEeecCCCCCCchHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHhhhHHHHhhhcccccccccccch
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHhcCCceeccCC--hHHHHHHHHhcCCCCCCcEEEeeCCEEEEeeCCceeEEEeeee
Q 040125          453 DQWRRRMSRAGFQAAPMK--MINQAQKWLKNNKVCEGYTVVEEKGCLVLGWKSKPIIATSCWK  513 (514)
Q Consensus       453 ~~Wr~Rm~~AGF~~v~ls--~~~qa~~lL~~~~~~~gy~v~e~~g~L~LgWk~rpL~svSaWr  513 (514)
                      ++|++||.+|||+++|+|  .+.||+.+|+.+. ++||+|++++|||+||||++||+++||||
T Consensus       313 ~~W~~r~~~aGF~~~~ls~~~~~qa~~ll~~~~-~~g~~v~~~~~~l~L~Wk~~pL~~~SaWr  374 (374)
T PF03514_consen  313 EQWRRRMRRAGFRPVPLSEFAVSQAKLLLRKFP-GDGYTVEEDGGCLLLGWKGRPLVAASAWR  374 (374)
T ss_pred             hHHHHHHHhcCCeecCCCHHHHHHHHHHHhccC-CCCeEEEEcCCEEEEEeCCcEEEEEeCcC
Confidence            999999999999999999  4689999998776 89999999999999999999999999997

Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional Back     alignment and domain information
>TIGR00740 methyltransferase, putative Back     alignment and domain information
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase Back     alignment and domain information
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities [] Back     alignment and domain information
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU Back     alignment and domain information
>PLN02233 ubiquinone biosynthesis methyltransferase Back     alignment and domain information
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A Back     alignment and domain information
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism] Back     alignment and domain information
>PRK06202 hypothetical protein; Provisional Back     alignment and domain information
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C Back     alignment and domain information
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A Back     alignment and domain information
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases Back     alignment and domain information
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional Back     alignment and domain information
>PRK08317 hypothetical protein; Provisional Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A Back     alignment and domain information
>PLN02585 magnesium protoporphyrin IX methyltransferase Back     alignment and domain information
>TIGR03438 probable methyltransferase Back     alignment and domain information
>TIGR00477 tehB tellurite resistance protein TehB Back     alignment and domain information
>PLN02336 phosphoethanolamine N-methyltransferase Back     alignment and domain information
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4) Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query514
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 5e-10
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 61.4 bits (148), Expect = 5e-10
 Identities = 87/539 (16%), Positives = 161/539 (29%), Gaps = 153/539 (28%)

Query: 4   DFLFNTHKLYNDQRSNQAIGLQLGLSIVDCYPYLPMMSDNSAASSMMLQPRDQKRLKRT- 62
             LF T     ++   + +   L ++    Y +L         S +  + R    + R  
Sbjct: 65  LRLFWTLLSKQEEMVQKFVEEVLRIN----YKFL--------MSPIKTEQRQPSMMTRMY 112

Query: 63  ISVADSIAGDGSPTSTLSRSSSSSSLSNLPRLQFRDHIWTYTQ-RYLAAEAVEEAAAAMT 121
           I   D +  D    +            N+ RLQ       Y + R    +A+ E   A  
Sbjct: 113 IEQRDRLYNDNQVFAKY----------NVSRLQ------PYLKLR----QALLELRPAKN 152

Query: 122 KAVDGCGGDQQDGTADGMRLVQLLIACAEAVACRDKSHASALLSELRANALVFGSSFQRV 181
             +DG  G    G          +        C           + + +  +F  + +  
Sbjct: 153 VLIDGVLGS---GK-------TWVAL----DVCLSYK------VQCKMDFKIFWLNLKNC 192

Query: 182 ASC-----FVQGLADRLASVQPLGAVGSFAPSMNIMDIAGSREKEEAFRLV----YEIC- 231
            S       +Q L  ++       +  S    + I  I     + E  RL+    YE C 
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSI-----QAELRRLLKSKPYENCL 247

Query: 232 ---PHIQFGHFVANSSILEAFEGESFVHVV--DLGMTLGLPRGQQWRRLIES-------- 278
               +      V N+    AF     + +      +T  L         ++         
Sbjct: 248 LVLLN------VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPD 301

Query: 279 -----LANRAGQPPRRLRITAVGLCVEKFQSIGDELKD------YAKTYGINLEFSVVES 327
                L       P+ L    +     +   I + ++D        K    +   +++ES
Sbjct: 302 EVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES 361

Query: 328 NLENLQTKDIK-------VLENEVLVVNSILQ-LHCVVKESRGALNSVLQIIHELSPKVL 379
           +L  L+  + +       V      +   +L  +   V +     + V+ ++++L     
Sbjct: 362 SLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK-----SDVMVVVNKLHKY-- 414

Query: 380 VLVEQDSSHNGPFFLGRFME---------ALH-----YYSAI--FDSLDAMLPKYDTKRA 423
            LVE+    +       ++E         ALH     +Y+    FDS D + P  D    
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQ--- 471

Query: 424 KIEQFYFAEEI----KNIVSCEGPARVERHERVDQWRRRMSRAGFQAAPMKMINQAQKW 478
                YF   I    KNI         E  ER+  +R       F     K+ + +  W
Sbjct: 472 -----YFYSHIGHHLKNI---------EHPERMTLFRMVFLDFRFLEQ--KIRHDSTAW 514

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
4gek_A261 TRNA (CMO5U34)-methyltransferase; structural genom 97.4
3dtn_A234 Putative methyltransferase MM_2633; structural gen 96.32
3dp7_A363 SAM-dependent methyltransferase; structural genomi 95.27
3dh0_A219 SAM dependent methyltransferase; cystal structure, 94.95
3bkx_A275 SAM-dependent methyltransferase; YP_807781.1, cycl 94.93
1vl5_A260 Unknown conserved protein BH2331; putative methylt 94.67
4a6d_A353 Hydroxyindole O-methyltransferase; melatonin, circ 94.21
3ujc_A266 Phosphoethanolamine N-methyltransferase; parasite; 94.16
1xxl_A239 YCGJ protein; structural genomics, protein structu 93.93
2aot_A292 HMT, histamine N-methyltransferase; classic methyl 93.85
2r3s_A335 Uncharacterized protein; methyltransferase domain, 93.85
1x19_A359 CRTF-related protein; methyltransferase, bacterioc 93.84
3mcz_A352 O-methyltransferase; adomet_mtases, S-adenosylmeth 93.79
2ip2_A334 Probable phenazine-specific methyltransferase; pyo 93.29
3gwz_A369 MMCR; methyltransferase, mitomycin, S-adenosyl met 92.95
3htx_A950 HEN1; HEN1, small RNA methyltransferase, protein-R 92.95
3vc1_A312 Geranyl diphosphate 2-C-methyltransferase; rossman 92.92
3f4k_A257 Putative methyltransferase; structural genomics, P 92.84
3reo_A368 (ISO)eugenol O-methyltransferase; directed evoluti 92.82
3i53_A332 O-methyltransferase; CO-complex, rossmann-like fol 92.53
3sm3_A235 SAM-dependent methyltransferases; NESG, structural 92.02
3mgg_A276 Methyltransferase; NYSGXRC, PSI-II, protein struct 91.93
3bus_A273 REBM, methyltransferase; rebeccamycin synthesis; H 91.39
3lcv_B281 Sisomicin-gentamicin resistance methylase SGM; ant 91.38
3p9c_A364 Caffeic acid O-methyltransferase; S-adenosylmethio 91.14
3lst_A348 CALO1 methyltransferase; calicheamicin, enediyne, 90.94
1qzz_A374 RDMB, aclacinomycin-10-hydroxylase; anthracycline, 90.91
1tw3_A360 COMT, carminomycin 4-O-methyltransferase; anthracy 90.88
4fsd_A383 Arsenic methyltransferase; rossmann fold; 1.75A {C 90.69
3jwh_A217 HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena 90.53
3hem_A302 Cyclopropane-fatty-acyl-phospholipid synthase 2; p 90.19
1xtp_A254 LMAJ004091AAA; SGPP, structural genomics, PSI, pro 90.12
3h2b_A203 SAM-dependent methyltransferase; alpha-beta protei 89.61
3dlc_A219 Putative S-adenosyl-L-methionine-dependent methylt 88.84
3e23_A211 Uncharacterized protein RPA2492; alpha-beta protei 88.19
3lcc_A235 Putative methyl chloride transferase; halide methy 87.82
3jwg_A219 HEN1, methyltransferase type 12; 1.90A {Clostridiu 87.8
3l8d_A242 Methyltransferase; structural genomics, PSI, nysgr 87.74
3gu3_A284 Methyltransferase; alpha-beta protein, structural 86.71
1kpg_A287 CFA synthase;, cyclopropane-fatty-acyl-phospholipi 86.69
2qe6_A274 Uncharacterized protein TFU_2867; putative methylt 86.51
3m70_A286 Tellurite resistance protein TEHB homolog; structu 86.18
3fzg_A200 16S rRNA methylase; methyltransferase, plasmid, tr 85.24
3ccf_A279 Cyclopropane-fatty-acyl-phospholipid synthase; YP_ 84.66
3hnr_A220 Probable methyltransferase BT9727_4108; structural 83.78
4dcm_A375 Ribosomal RNA large subunit methyltransferase G; 2 83.76
3kkz_A267 Uncharacterized protein Q5LES9; putative methyltra 83.57
3mq2_A218 16S rRNA methyltransferase; methyltranferase, ribo 83.1
3ocj_A305 Putative exported protein; structural genomics, PS 82.83
3g5l_A253 Putative S-adenosylmethionine dependent methyltran 82.62
3dli_A240 Methyltransferase; PSI-II, NYSGXRC, structural gen 82.19
2o57_A297 Putative sarcosine dimethylglycine methyltransfera 81.94
1fp1_D372 Isoliquiritigenin 2'-O-methyltransferase; protein- 81.82
1nkv_A256 Hypothetical protein YJHP; structural genomics, PS 80.82
2fk8_A318 Methoxy mycolic acid synthase 4; S-adenosylmethion 80.77
3frh_A253 16S rRNA methylase; methyltransferase domain, heli 80.73
>4gek_A TRNA (CMO5U34)-methyltransferase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, rossmann fold; HET: GEK; 1.50A {Escherichia coli} PDB: 1im8_A* Back     alignment and structure
Probab=97.40  E-value=0.0037  Score=61.28  Aligned_cols=108  Identities=19%  Similarity=0.264  Sum_probs=64.4

Q ss_pred             eeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCccccC
Q 040125          254 FVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENLQ  333 (514)
Q Consensus       254 ~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l~  333 (514)
                      .-+|+|+|.|.    |    .+...|+.+-+ +| ..+||||+.+...++...+++.++-  .+.+++|..  ..++++.
T Consensus        71 ~~~vLDlGcGt----G----~~~~~la~~~~-~~-~~~v~gvD~s~~ml~~A~~~~~~~~--~~~~v~~~~--~D~~~~~  136 (261)
T 4gek_A           71 GTQVYDLGCSL----G----AATLSVRRNIH-HD-NCKIIAIDNSPAMIERCRRHIDAYK--APTPVDVIE--GDIRDIA  136 (261)
T ss_dssp             TCEEEEETCTT----T----HHHHHHHHTCC-SS-SCEEEEEESCHHHHHHHHHHHHTSC--CSSCEEEEE--SCTTTCC
T ss_pred             CCEEEEEeCCC----C----HHHHHHHHhcC-CC-CCEEEEEECCHHHHHHHHHHHHhhc--cCceEEEee--ccccccc
Confidence            34799999643    3    34455666533 34 5899999999888888877765332  223455533  3344333


Q ss_pred             cccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCc-EEEEEeec
Q 040125          334 TKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPK-VLVLVEQD  385 (514)
Q Consensus       334 ~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~Pk-VvvlvE~e  385 (514)
                           ..+-.+++.  .+.||++..+   ....+|+.| +.|+|. +++++|.-
T Consensus       137 -----~~~~d~v~~--~~~l~~~~~~---~~~~~l~~i~~~LkpGG~lii~e~~  180 (261)
T 4gek_A          137 -----IENASMVVL--NFTLQFLEPS---ERQALLDKIYQGLNPGGALVLSEKF  180 (261)
T ss_dssp             -----CCSEEEEEE--ESCGGGSCHH---HHHHHHHHHHHHEEEEEEEEEEEEB
T ss_pred             -----cccccccee--eeeeeecCch---hHhHHHHHHHHHcCCCcEEEEEecc
Confidence                 222234444  4567887542   235677766 669998 45555654
>3dtn_A Putative methyltransferase MM_2633; structural genomics, unknown function, PSI-2, protein structure initiative; 2.09A {Methanosarcina mazei} Back     alignment and structure
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus} Back     alignment and structure
>3dh0_A SAM dependent methyltransferase; cystal structure, PSI-2, NYSGXRC, structural genomics, protein structure initiative; HET: SAM; 2.72A {Aquifex aeolicus} Back     alignment and structure
>3bkx_A SAM-dependent methyltransferase; YP_807781.1, cyclopropane-fatty-acyl-phospholipid synthase-L protein, methyltransferase domain; 1.85A {Lactobacillus casei} Back     alignment and structure
>1vl5_A Unknown conserved protein BH2331; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: MSE; 1.95A {Bacillus halodurans} SCOP: c.66.1.41 Back     alignment and structure
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A* Back     alignment and structure
>3ujc_A Phosphoethanolamine N-methyltransferase; parasite; HET: PC; 1.19A {Plasmodium falciparum} PDB: 3uj9_A* 3uj6_A* 3uj7_A* 3uj8_A* 3uja_A 3ujb_A* 4fgz_A* 3ujd_A* Back     alignment and structure
>1xxl_A YCGJ protein; structural genomics, protein structure initiative, PSI, NEW YORK SGX research center for structural genomics, nysgxrc; 2.10A {Bacillus subtilis} SCOP: c.66.1.41 PDB: 2glu_A* Back     alignment and structure
>2aot_A HMT, histamine N-methyltransferase; classic methyltransferase fold, protein-drug complex; HET: CSO 2PM SAH; 1.90A {Homo sapiens} SCOP: c.66.1.19 PDB: 1jqd_A* 2aou_A* 2aov_A* 2aox_A* 1jqe_A* 2aow_A* Back     alignment and structure
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme} Back     alignment and structure
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A* Back     alignment and structure
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis} Back     alignment and structure
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa} Back     alignment and structure
>3gwz_A MMCR; methyltransferase, mitomycin, S-adenosyl methionine, transferase; HET: MSE SAH; 1.91A {Streptomyces lavendulae} PDB: 3gxo_A* Back     alignment and structure
>3htx_A HEN1; HEN1, small RNA methyltransferase, protein-RNA complex; HET: SAH; 3.10A {Arabidopsis thaliana} Back     alignment and structure
>3vc1_A Geranyl diphosphate 2-C-methyltransferase; rossmann fold, methyltransferase fold, SAM-dependent methyltransferase; HET: SAH GST GOL; 1.82A {Streptomyces coelicolor} PDB: 3vc2_A* 4f84_A* 4f85_A 4f86_A* Back     alignment and structure
>3f4k_A Putative methyltransferase; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacteroides thetaiotaomicron} PDB: 3t0i_A* 3svz_A* 3sxj_A* Back     alignment and structure
>3reo_A (ISO)eugenol O-methyltransferase; directed evolution, saturation mutagenesis, regioselectivity transferase; HET: SAH EUG; 1.90A {Clarkia breweri} PDB: 3tky_A* 1kyz_A* 1kyw_A* Back     alignment and structure
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A* Back     alignment and structure
>3sm3_A SAM-dependent methyltransferases; NESG, structural genomics, PSI-biology, protein structure in northeast structural genomics; 2.20A {Methanosarcina mazei} Back     alignment and structure
>3mgg_A Methyltransferase; NYSGXRC, PSI-II, protein structure initiative, structural genomics, NEW YORK SGX research center for structural genomics; 1.86A {Methanosarcina mazei} Back     alignment and structure
>3bus_A REBM, methyltransferase; rebeccamycin synthesis; HET: SAH; 2.65A {Lechevalieria aerocolonigenes} Back     alignment and structure
>3lcv_B Sisomicin-gentamicin resistance methylase SGM; antibiotic resistance, methyltransferase, transferase; HET: SAM; 2.00A {Micromonospora zionensis} PDB: 3lcu_A* Back     alignment and structure
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A* Back     alignment and structure
>3lst_A CALO1 methyltransferase; calicheamicin, enediyne, SAH, STRU genomics, PSI-2, protein structure initiative; HET: SAH; 2.40A {Micromonospora echinospora} Back     alignment and structure
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A* Back     alignment and structure
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A* Back     alignment and structure
>4fsd_A Arsenic methyltransferase; rossmann fold; 1.75A {Cyanidioschyzon SP} PDB: 4fr0_A* 4fs8_A 3p7e_A 3qnh_A 3qhu_A Back     alignment and structure
>3jwh_A HEN1; methyltransferase; HET: SAH; 2.20A {Anabaena variabilis} PDB: 3jwj_A Back     alignment and structure
>3hem_A Cyclopropane-fatty-acyl-phospholipid synthase 2; protein-ligand complex, cytoplasm, lipid synthesis, methyltransferase; HET: D22; 2.39A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kpi_A* Back     alignment and structure
>1xtp_A LMAJ004091AAA; SGPP, structural genomics, PSI, protein structure initiative dependent methyltransferase; HET: SAI; 1.94A {Leishmania major} SCOP: c.66.1.42 Back     alignment and structure
>3h2b_A SAM-dependent methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Corynebacterium glutamicum atcc 13032} Back     alignment and structure
>3dlc_A Putative S-adenosyl-L-methionine-dependent methyltransferase; structural genomics, joint center for structural genomics; HET: MSE SAM; 1.15A {Methanococcus maripaludis} Back     alignment and structure
>3e23_A Uncharacterized protein RPA2492; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAM; 1.60A {Rhodopseudomonas palustris} Back     alignment and structure
>3lcc_A Putative methyl chloride transferase; halide methyltransferase; HET: SAH; 1.80A {Arabidopsis thaliana} Back     alignment and structure
>3jwg_A HEN1, methyltransferase type 12; 1.90A {Clostridium thermocellum} PDB: 3jwi_A Back     alignment and structure
>3l8d_A Methyltransferase; structural genomics, PSI, nysgrc, protein structure initiative, NEW YORK SGX research center for STRU genomics; 1.70A {Bacillus thuringiensis} Back     alignment and structure
>3gu3_A Methyltransferase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; HET: SAH; 2.30A {Bacillus cereus} SCOP: c.66.1.49 PDB: 2gh1_A Back     alignment and structure
>1kpg_A CFA synthase;, cyclopropane-fatty-acyl-phospholipid synthase 1; mixed alpha beta fold, structural genomics, PSI; HET: SAH 16A; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 1kp9_A* 1kph_A* 1tpy_A* 1l1e_A* Back     alignment and structure
>2qe6_A Uncharacterized protein TFU_2867; putative methyltransferase, structural genomics, joint cente structural genomics, JCSG; HET: NEP SAM; 1.95A {Thermobifida fusca} Back     alignment and structure
>3m70_A Tellurite resistance protein TEHB homolog; structural genomics, PSI-2, protein ST initiative; 1.95A {Haemophilus influenzae} Back     alignment and structure
>3fzg_A 16S rRNA methylase; methyltransferase, plasmid, transferase; HET: SAM; 2.00A {Escherichia coli} Back     alignment and structure
>3ccf_A Cyclopropane-fatty-acyl-phospholipid synthase; YP_321342.1, putative methyltransferase; 1.90A {Anabaena variabilis atcc 29413} Back     alignment and structure
>3hnr_A Probable methyltransferase BT9727_4108; structural genomics, PSI-2, protein structure initiative; 2.80A {Bacillus thuringiensis serovarkonkukian} Back     alignment and structure
>4dcm_A Ribosomal RNA large subunit methyltransferase G; 23S rRNA (guanine1835-N2)-methyltransferase; HET: SAM; 2.30A {Escherichia coli} Back     alignment and structure
>3kkz_A Uncharacterized protein Q5LES9; putative methyltransferase, BFR250, NESG, structural genomics, PSI-2; HET: SAM; 1.68A {Bacteroides fragilis nctc 9343} PDB: 3e7p_A 3t7s_A* 3t7r_A* 3t7t_A* Back     alignment and structure
>3mq2_A 16S rRNA methyltransferase; methyltranferase, ribosomal, antibiotic resistance, aminoglycoside, S-adenosyl-L-methionine; HET: SAH; 1.69A {Streptomyces SP} Back     alignment and structure
>3ocj_A Putative exported protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: PLM; 1.39A {Bordetella parapertussis} Back     alignment and structure
>3g5l_A Putative S-adenosylmethionine dependent methyltransferase; structural genomics, PSI-2, protein structure initiative; 2.35A {Listeria monocytogenes str} Back     alignment and structure
>3dli_A Methyltransferase; PSI-II, NYSGXRC, structural genomics, protein structure initiative; 2.46A {Archaeoglobus fulgidus} Back     alignment and structure
>2o57_A Putative sarcosine dimethylglycine methyltransferase; structural genomics, protein structure initiative, PSI-2; 1.95A {Galdieria sulphuraria} SCOP: c.66.1.18 Back     alignment and structure
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A* Back     alignment and structure
>1nkv_A Hypothetical protein YJHP; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.90A {Escherichia coli} SCOP: c.66.1.21 Back     alignment and structure
>2fk8_A Methoxy mycolic acid synthase 4; S-adenosylmethionine-dependent methyltransferase fold, trans; HET: SAM; 2.00A {Mycobacterium tuberculosis} SCOP: c.66.1.18 PDB: 2fk7_A* 3ha3_A* 3ha5_A* 3ha7_A* Back     alignment and structure
>3frh_A 16S rRNA methylase; methyltransferase domain, helical N-terminal domain, methyltransferase, plasmid, transferase; HET: SAH; 1.20A {Escherichia coli} PDB: 3fri_A* 3b89_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query514
d1im8a_225 Hypothetical protein HI0319 (YecO) {Haemophilus in 97.46
d1tw3a2253 Carminomycin 4-O-methyltransferase {Streptomyces p 96.39
d1qzza2256 Aclacinomycin-10-hydroxylase RdmB {Streptomyces pu 96.25
d1jqea_280 Histamine methyltransferase {Human (Homo sapiens) 94.35
d1xxla_234 Hypothetical protein YcgJ {Bacillus subtilis [TaxI 94.25
d2fk8a1280 Methoxy mycolic acid synthase 4, Mma4 {Mycobacteri 94.08
d1vl5a_231 Hypothetical protein BH2331 {Bacillus halodurans [ 93.94
d2i6ga1198 Putative methyltransferase TehB {Salmonella typhim 92.99
d2gh1a1281 Methyltransferase BC2162 {Bacillus cereus [TaxId: 92.98
d1fp2a2244 Isoflavone O-methyltransferase {Alfalfa (Medicago 92.88
d1vlma_208 Possible histamine N-methyltransferase TM1293 {The 92.66
d1fp1d2244 Chalcone O-methyltransferase {Alfalfa (Medicago sa 92.23
d1ve3a1226 Hypothetical protein PH0226 {Archaeon Pyrococcus h 92.06
d1ri5a_252 mRNA cap (Guanine N-7) methyltransferase {Fungus ( 90.92
d2o57a1282 Putative sarcosine dimethylglycine methyltransfera 86.6
d1wzna1251 Hypothetical methyltransferase PH1305 {Archaeon Py 86.55
d1kyza2243 Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltra 85.74
d1nkva_245 Hypothetical Protein YjhP {Escherichia coli [TaxId 85.07
d2ex4a1222 Adrenal gland protein AD-003 (C9orf32) {Human (Hom 84.9
d1y8ca_246 Putative methyltransferase CAC2371 {Clostridium ac 83.29
d1xvaa_292 Glycine N-methyltransferase {Rat (Rattus norvegicu 80.05
>d1im8a_ c.66.1.14 (A:) Hypothetical protein HI0319 (YecO) {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: S-adenosyl-L-methionine-dependent methyltransferases
superfamily: S-adenosyl-L-methionine-dependent methyltransferases
family: Hypothetical protein HI0319 (YecO)
domain: Hypothetical protein HI0319 (YecO)
species: Haemophilus influenzae [TaxId: 727]

Probab=97.46  E-value=0.0069  Score=54.86  Aligned_cols=108  Identities=19%  Similarity=0.250  Sum_probs=64.7

Q ss_pred             ceeEEEeeccccCCCCccchHHHHHHHhhcCCCCCCcEEEeEecCChhHHHHHHHHHHHHHHhcCCceEEEeecCCcccc
Q 040125          253 SFVHVVDLGMTLGLPRGQQWRRLIESLANRAGQPPRRLRITAVGLCVEKFQSIGDELKDYAKTYGINLEFSVVESNLENL  332 (514)
Q Consensus       253 ~~VHIVDf~I~~G~~~G~QWpsLiqaLA~R~ggpP~~LRIT~I~~~~~~l~etg~rL~~fA~~lgvpFeF~~V~~~lE~l  332 (514)
                      ..-||+|+|.|-|        .+...|+.... .| ..+||||+.+.+.++...+++.    ..+....++.......++
T Consensus        39 ~~~~vLDlGCGtG--------~~~~~l~~~~~-~~-~~~v~giD~S~~ml~~A~~~~~----~~~~~~~~~~~~~d~~~~  104 (225)
T d1im8a_          39 ADSNVYDLGCSRG--------AATLSARRNIN-QP-NVKIIGIDNSQPMVERCRQHIA----AYHSEIPVEILCNDIRHV  104 (225)
T ss_dssp             TTCEEEEESCTTC--------HHHHHHHHTCC-CS-SCEEEEECSCHHHHHHHHHHHH----TSCCSSCEEEECSCTTTC
T ss_pred             CCCEEEEeccchh--------hHHHHHHHhhc-CC-CCceEEeCCCHHHHHHHHHHhH----hhcccchhhhccchhhcc
Confidence            3458999996432        33344554322 34 6899999999988888877765    333333343333222222


Q ss_pred             CcccccccCCcEEEEEeccccccccccccchHHHHHHHH-HhcCCcE-EEEEee
Q 040125          333 QTKDIKVLENEVLVVNSILQLHCVVKESRGALNSVLQII-HELSPKV-LVLVEQ  384 (514)
Q Consensus       333 ~~~~l~~~~~EaLaVN~~~~Lh~l~~es~~~~~~~L~~I-r~L~PkV-vvlvE~  384 (514)
                             ..+..-+|.|.+.||++..+   ....+|+.| +.|+|.- +++.|.
T Consensus       105 -------~~~~~d~i~~~~~l~~~~~~---d~~~~l~~i~~~LkpgG~li~~~~  148 (225)
T d1im8a_         105 -------EIKNASMVILNFTLQFLPPE---DRIALLTKIYEGLNPNGVLVLSEK  148 (225)
T ss_dssp             -------CCCSEEEEEEESCGGGSCGG---GHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred             -------ccccceeeEEeeeccccChh---hHHHHHHHHHHhCCCCceeecccc
Confidence                   22344456677778887533   234677777 6699985 455443
>d1tw3a2 c.66.1.12 (A:99-351) Carminomycin 4-O-methyltransferase {Streptomyces peucetius [TaxId: 1950]} Back     information, alignment and structure
>d1qzza2 c.66.1.12 (A:102-357) Aclacinomycin-10-hydroxylase RdmB {Streptomyces purpurascens [TaxId: 1924]} Back     information, alignment and structure
>d1jqea_ c.66.1.19 (A:) Histamine methyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1xxla_ c.66.1.41 (A:) Hypothetical protein YcgJ {Bacillus subtilis [TaxId: 1423]} Back     information, alignment and structure
>d2fk8a1 c.66.1.18 (A:22-301) Methoxy mycolic acid synthase 4, Mma4 {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1vl5a_ c.66.1.41 (A:) Hypothetical protein BH2331 {Bacillus halodurans [TaxId: 86665]} Back     information, alignment and structure
>d2i6ga1 c.66.1.44 (A:1-198) Putative methyltransferase TehB {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d2gh1a1 c.66.1.49 (A:13-293) Methyltransferase BC2162 {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure
>d1fp2a2 c.66.1.12 (A:109-352) Isoflavone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1vlma_ c.66.1.41 (A:) Possible histamine N-methyltransferase TM1293 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d1fp1d2 c.66.1.12 (D:129-372) Chalcone O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1ve3a1 c.66.1.43 (A:2-227) Hypothetical protein PH0226 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1ri5a_ c.66.1.34 (A:) mRNA cap (Guanine N-7) methyltransferase {Fungus (Encephalitozoon cuniculi) [TaxId: 6035]} Back     information, alignment and structure
>d2o57a1 c.66.1.18 (A:16-297) Putative sarcosine dimethylglycine methyltransferase {Red algae (Galdieria sulphuraria) [TaxId: 130081]} Back     information, alignment and structure
>d1wzna1 c.66.1.43 (A:1-251) Hypothetical methyltransferase PH1305 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1kyza2 c.66.1.12 (A:120-362) Caffeic acid/5-hydroxyferulic acid 3/5-O-methyltransferase {Alfalfa (Medicago sativa) [TaxId: 3879]} Back     information, alignment and structure
>d1nkva_ c.66.1.21 (A:) Hypothetical Protein YjhP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2ex4a1 c.66.1.42 (A:2-224) Adrenal gland protein AD-003 (C9orf32) {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1y8ca_ c.66.1.43 (A:) Putative methyltransferase CAC2371 {Clostridium acetobutylicum [TaxId: 1488]} Back     information, alignment and structure
>d1xvaa_ c.66.1.5 (A:) Glycine N-methyltransferase {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure