Citrus Sinensis ID: 040128


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230--
MEPRSIANLVSLPRRREENEPSVCAQRSESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQKKNKVR
cccccHHHHHccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcEEEEEEEEEEEEEccccccccccccHHHHHHccccccccccccccEEEEHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHccEEEEEccccccccccccccEEEEEEEEccccHHHHHHHHHHHHHHHHHHHcHHHcccccccc
cccccHHHHcccccccccccccHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHcccEEEccccccccccHHHHHHHHHHHHccccHccccccEEEEHHHHHHHHcHHHHHHHHHHHHcccccHHEEEEEEHHHHHccHHHHcHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
meprsianlvslprrreenepsvcaqrsesgglRAQLALAVHYTCCLWtclfvrrlpyqgkvpkisktdrWLMCWWAFTGLTHIILEgyfafspefykdksgfYLAEVWKEYskgdsryaarDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSylegdnfaaspyyynLYYIGANASWVVIPSLIAIRCWKKicaapqlqgqkknkvr
meprsianlvslprrreenepsvcaqrsesGGLRAQLALAVHYTCCLWTCLFVRRLpyqgkvpkisktdrWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICaapqlqgqkknkvr
MEPRSIANLVSLPRRREENEPSVCAQRSESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQKKNKVR
********************************LRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAA************
*************RRREENEPSVCAQRSESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKK****************
MEPRSIANLVSLPR*****************GLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQ**********
********************PSVCA***ESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQ******
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiii
oooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiHHHHHHHHHHHHHHHHoooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
MEPRSIANLVSLPRRREENEPSVCAQRSESGGLRAQLALAVHYTCCLWTCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQKKNKVR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query232 2.2.26 [Sep-21-2011]
Q9FTZ2219 Probable 3-beta-hydroxyst yes no 0.698 0.739 0.701 3e-64
O48962223 Probable 3-beta-hydroxyst yes no 0.728 0.757 0.660 2e-61
Q9JJ46230 3-beta-hydroxysteroid-Del yes no 0.685 0.691 0.358 2e-27
P70245230 3-beta-hydroxysteroid-Del yes no 0.698 0.704 0.363 3e-27
Q60490229 3-beta-hydroxysteroid-Del yes no 0.672 0.681 0.366 3e-24
Q15125230 3-beta-hydroxysteroid-Del yes no 0.625 0.630 0.375 3e-24
Q9D0P0206 Emopamil-binding protein- no no 0.650 0.733 0.326 3e-17
Q9BY08206 Emopamil-binding protein- no no 0.706 0.796 0.317 7e-15
Q55E32219 Probable 3-beta-hydroxyst yes no 0.728 0.771 0.263 2e-09
>sp|Q9FTZ2|EBP_ORYSJ Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Oryza sativa subsp. japonica GN=Os01g0103600 PE=2 SV=1 Back     alignment and function desciption
 Score =  244 bits (624), Expect = 3e-64,   Method: Compositional matrix adjust.
 Identities = 115/164 (70%), Positives = 137/164 (83%), Gaps = 2/164 (1%)

Query: 64  KISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARD 123
           ++S TDRWLMCWWAFTGLTHII+EG F F+P F+ +++  Y  EVWKEYSKGDSRY ARD
Sbjct: 54  RLSDTDRWLMCWWAFTGLTHIIIEGTFVFAPNFFSNQNPSYFDEVWKEYSKGDSRYVARD 113

Query: 124 AGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDN 183
              V VEGITAVLEGPASLL+VYAIA+GKSYS+ILQF + LGQLYG  VYF+T+YL+G N
Sbjct: 114 PATVTVEGITAVLEGPASLLAVYAIASGKSYSHILQFTVCLGQLYGCLVYFITAYLDGFN 173

Query: 184 FAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQK 227
           F  SP+Y+  Y+IGAN+SWVVIP++IAIR WKKICAA   QG+K
Sbjct: 174 FWTSPFYFWAYFIGANSSWVVIPTMIAIRSWKKICAA--FQGEK 215




Catalyzes the conversion of Delta(8)-sterols to their corresponding Delta(7)-isomers.
Oryza sativa subsp. japonica (taxid: 39947)
EC: 5EC: .EC: 3EC: .EC: 3EC: .EC: 5
>sp|O48962|EBP_ARATH Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Arabidopsis thaliana GN=At1g20050 PE=2 SV=1 Back     alignment and function description
>sp|Q9JJ46|EBP_RAT 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Rattus norvegicus GN=Ebp PE=2 SV=3 Back     alignment and function description
>sp|P70245|EBP_MOUSE 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Mus musculus GN=Ebp PE=1 SV=3 Back     alignment and function description
>sp|Q60490|EBP_CAVPO 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Cavia porcellus GN=EBP PE=1 SV=3 Back     alignment and function description
>sp|Q15125|EBP_HUMAN 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Homo sapiens GN=EBP PE=1 SV=3 Back     alignment and function description
>sp|Q9D0P0|EBPL_MOUSE Emopamil-binding protein-like OS=Mus musculus GN=Ebpl PE=2 SV=1 Back     alignment and function description
>sp|Q9BY08|EBPL_HUMAN Emopamil-binding protein-like OS=Homo sapiens GN=EBPL PE=1 SV=1 Back     alignment and function description
>sp|Q55E32|EBP_DICDI Probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase OS=Dictyostelium discoideum GN=ebp PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
224075427220 predicted protein [Populus trichocarpa] 0.745 0.786 0.803 6e-78
255543264220 sterol isomerase, putative [Ricinus comm 0.737 0.777 0.830 2e-77
388517313225 unknown [Lotus japonicus] 0.754 0.777 0.772 4e-75
356531218219 PREDICTED: probable 3-beta-hydroxysteroi 0.75 0.794 0.790 6e-75
295368128217 putative C-8,7 sterol isomerase [Gossypi 0.745 0.797 0.791 7e-75
255648367219 unknown [Glycine max] 0.75 0.794 0.785 3e-74
225435454222 PREDICTED: probable 3-beta-hydroxysteroi 0.745 0.779 0.820 1e-69
356531220227 PREDICTED: probable 3-beta-hydroxysteroi 0.75 0.766 0.689 3e-65
388509960228 unknown [Medicago truncatula] 0.801 0.815 0.696 1e-64
356550871193 PREDICTED: probable 3-beta-hydroxysteroi 0.719 0.865 0.770 4e-64
>gi|224075427|ref|XP_002304628.1| predicted protein [Populus trichocarpa] gi|222842060|gb|EEE79607.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  296 bits (757), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 139/173 (80%), Positives = 157/173 (90%)

Query: 60  GKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRY 119
           G+  KI+K +R LMCWWAFTGLTH+ILEGYFAFSPEFYKDK+  YLAEVWKEYSKGDSRY
Sbjct: 48  GRSRKITKMNRLLMCWWAFTGLTHLILEGYFAFSPEFYKDKTAHYLAEVWKEYSKGDSRY 107

Query: 120 AARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYL 179
           AARDA  V VEG+TAVLEGPASLL+VYAIA+GKSYSYILQFA+ LGQLYGTAVYF+T+YL
Sbjct: 108 AARDAATVTVEGLTAVLEGPASLLAVYAIASGKSYSYILQFAVCLGQLYGTAVYFLTAYL 167

Query: 180 EGDNFAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAAPQLQGQKKNKVR 232
           EGD+FA SPY+Y +YYIGANASWVVIPSLIA+RCWKKIC+A Q+ GQK+ K R
Sbjct: 168 EGDHFATSPYHYYVYYIGANASWVVIPSLIAMRCWKKICSAVQVHGQKRTKTR 220




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255543264|ref|XP_002512695.1| sterol isomerase, putative [Ricinus communis] gi|223548656|gb|EEF50147.1| sterol isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|388517313|gb|AFK46718.1| unknown [Lotus japonicus] Back     alignment and taxonomy information
>gi|356531218|ref|XP_003534175.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|295368128|gb|ADG02944.1| putative C-8,7 sterol isomerase [Gossypium hirsutum] Back     alignment and taxonomy information
>gi|255648367|gb|ACU24634.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|225435454|ref|XP_002285453.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase isoform 2 [Vitis vinifera] gi|225435456|ref|XP_002285450.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase isoform 1 [Vitis vinifera] gi|297746323|emb|CBI16379.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356531220|ref|XP_003534176.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|388509960|gb|AFK43046.1| unknown [Medicago truncatula] Back     alignment and taxonomy information
>gi|356550871|ref|XP_003543806.1| PREDICTED: probable 3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query232
TAIR|locus:2198626223 HYD1 "HYDRA1" [Arabidopsis tha 0.676 0.704 0.719 7.1e-61
RGD|620957230 Ebp "emopamil binding protein 0.698 0.704 0.357 1.7e-27
MGI|MGI:107822230 Ebp "phenylalkylamine Ca2+ ant 0.693 0.7 0.361 2.2e-27
UNIPROTKB|D0G6S5230 EBP "Emopamil binding protein 0.724 0.730 0.339 4.5e-27
ZFIN|ZDB-GENE-040718-12232 ebp "emopamil binding protein 0.685 0.685 0.345 4.5e-27
UNIPROTKB|Q3ZBT8230 EBP "Uncharacterized protein" 0.693 0.7 0.337 5.2e-26
UNIPROTKB|Q15125230 EBP "3-beta-hydroxysteroid-Del 0.689 0.695 0.359 8.4e-26
UNIPROTKB|E2QYH5230 EBP "Uncharacterized protein" 0.689 0.695 0.335 2.6e-24
UNIPROTKB|E2RDU6230 E2RDU6 "Uncharacterized protei 0.685 0.691 0.329 4.8e-23
ZFIN|ZDB-GENE-030616-542219 ebpl "emopamil binding protein 0.715 0.757 0.352 1.6e-22
TAIR|locus:2198626 HYD1 "HYDRA1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
 Identities = 113/157 (71%), Positives = 131/157 (83%)

Query:    64 KISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAARD 123
             K +K D+ LMCWW FTGLTH+ILEGYF FSPEF+KD +  YLAEVWKEYSKGDSRY  RD
Sbjct:    50 KKAKLDKLLMCWWTFTGLTHVILEGYFVFSPEFFKDNTSAYLAEVWKEYSKGDSRYVGRD 109

Query:   124 AGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEGDN 183
             + VV+VEGITAV+ GPASLL++YAIA  KSYSY+LQ AIS+ QLYG  VYF+T+ LEGDN
Sbjct:   110 SAVVSVEGITAVIVGPASLLAIYAIAKEKSYSYVLQLAISVCQLYGCLVYFITAILEGDN 169

Query:   184 FAASPYYYNLYYIGANASWVVIPSLIAIRCWKKICAA 220
             FA + +YY  YYIGAN  WV+IPSLI+ RCWKKICAA
Sbjct:   170 FATNSFYYYSYYIGANCWWVLIPSLISFRCWKKICAA 206




GO:0016125 "sterol metabolic process" evidence=IEA
GO:0047750 "cholestenol delta-isomerase activity" evidence=IEA
GO:0016126 "sterol biosynthetic process" evidence=RCA;TAS
GO:0005886 "plasma membrane" evidence=IDA
GO:0060964 "regulation of gene silencing by miRNA" evidence=IMP
GO:0006084 "acetyl-CoA metabolic process" evidence=RCA
GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA
GO:0019932 "second-messenger-mediated signaling" evidence=RCA
GO:0000247 "C-8 sterol isomerase activity" evidence=IMP
RGD|620957 Ebp "emopamil binding protein (sterol isomerase)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
MGI|MGI:107822 Ebp "phenylalkylamine Ca2+ antagonist (emopamil) binding protein" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|D0G6S5 EBP "Emopamil binding protein (Sterol isomerase)" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-040718-12 ebp "emopamil binding protein (sterol isomerase)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|Q3ZBT8 EBP "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q15125 EBP "3-beta-hydroxysteroid-Delta(8),Delta(7)-isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QYH5 EBP "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|E2RDU6 E2RDU6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030616-542 ebpl "emopamil binding protein-like" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O48962EBP_ARATH5, ., 3, ., 3, ., 50.66090.72840.7578yesno
Q9FTZ2EBP_ORYSJ5, ., 3, ., 3, ., 50.70120.69820.7397yesno

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
eugene3.00031298
hypothetical protein (221 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_fgenesh4_pg.C_280278
hypothetical protein (367 aa)
      0.916
estExt_fgenesh4_pm.C_LG_IV0218
hypothetical protein (278 aa)
      0.904
grail3.0123009201
hypothetical protein (278 aa)
      0.904
gw1.IX.3368.1
hypothetical protein (335 aa)
      0.903
estExt_fgenesh4_pg.C_LG_X1518
hypothetical protein (563 aa)
       0.902
fgenesh4_pg.C_LG_VIII000736
hypothetical protein (563 aa)
       0.902
estExt_fgenesh4_pg.C_LG_II0150
SubName- Full=Putative uncharacterized protein; (365 aa)
      0.901
eugene3.00051503
SubName- Full=Putative uncharacterized protein; (365 aa)
      0.901
gw1.1425.5.1
annotation not avaliable (207 aa)
       0.899
fgenesh4_pg.C_LG_I001705
hypothetical protein (269 aa)
       0.899

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query232
pfam05241193 pfam05241, EBP, Emopamil binding protein 5e-63
>gnl|CDD|218520 pfam05241, EBP, Emopamil binding protein Back     alignment and domain information
 Score =  194 bits (495), Expect = 5e-63
 Identities = 75/177 (42%), Positives = 101/177 (57%), Gaps = 11/177 (6%)

Query: 49  TCLFVRRLPYQGKVPKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEV 108
             L  RRL      P++SK DR    W+   GL H+ LEGYF  +  F         A++
Sbjct: 16  AYLLSRRLR-----PRLSKGDRLAFLWFLLDGLIHLFLEGYFVLNHAFSASSQDL-FAQL 69

Query: 109 WKEYSKGDSRYAARDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLY 168
           WKEY+K DSRY   D  VV+VE IT +L GP  LL  YAIA  K   + LQ  +S+GQLY
Sbjct: 70  WKEYAKSDSRYLTADPFVVSVETITVLLWGPLCLLVAYAIAKDKPLRHFLQIVVSVGQLY 129

Query: 169 GTAVYFMTSYLEG----DNFAAS-PYYYNLYYIGANASWVVIPSLIAIRCWKKICAA 220
           GT +YF T +L+G      F+   P Y+  Y++  N+ W+VIPSL+  + WK++ AA
Sbjct: 130 GTVLYFATEWLDGFVHGREFSTPEPLYFWFYFVFMNSLWIVIPSLLLWQSWKELAAA 186


Emopamil binding protein (EBP) is as a gene that encodes a non-glycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues. The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities. Length = 193

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 232
PF05241194 EBP: Emopamil binding protein ; InterPro: IPR00790 100.0
KOG4826229 consensus C-8,7 sterol isomerase [Lipid transport 100.0
PF10914150 DUF2781: Protein of unknown function (DUF2781); In 93.98
>PF05241 EBP: Emopamil binding protein ; InterPro: IPR007905 Emopamil binding protein (EBP) is a nonglycosylated type I integral membrane protein of endoplasmic reticulum and shows high level expression in epithelial tissues Back     alignment and domain information
Probab=100.00  E-value=7.2e-60  Score=406.39  Aligned_cols=183  Identities=39%  Similarity=0.734  Sum_probs=170.2

Q ss_pred             HHhHHHHHHhhhhhhhcccC-CCCCccchHHHHHHHhhcceeeEEEeeEEEecccccCCccchhhhhhhhhccccccccc
Q 040128           43 YTCCLWTCLFVRRLPYQGKV-PKISKTDRWLMCWWAFTGLTHIILEGYFAFSPEFYKDKSGFYLAEVWKEYSKGDSRYAA  121 (232)
Q Consensus        43 y~~~~~~~i~~~~~~~s~~~-~~ls~~dr~~~~Wf~~~gliHl~~EG~Fv~~~~~~~~~~~~~~~~LWkeYa~~DsRY~~  121 (232)
                      .++++++++++++++++++. |++++.||++++||++||+||+++||+|+++++++++.++++++|+||||+++|+||++
T Consensus         4 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~W~~~~~~iH~~~eG~f~~~~~~~~~~~~~~~~~lWkeYa~~D~RY~~   83 (194)
T PF05241_consen    4 IFLAGCAAVLLIAYLLSRRLPPSLSKGDRFVFLWFALDGLIHFFLEGYFVYFRPFSPGTSQSLLAQLWKEYAKADSRYLT   83 (194)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHhhHHheEeeehheechhccccccchHHHHHHHHccCCccccc
Confidence            34456777777777777655 89999999999999999999999999999999999885556999999999999999999


Q ss_pred             cCCcEEEEehhHHHhhhhHHHHHHHHHHhCCCchhhHHHhhhhhhhccceEEEEeeeccC----CCCC-CCcceeeeeeE
Q 040128          122 RDAGVVAVEGITAVLEGPASLLSVYAIATGKSYSYILQFAISLGQLYGTAVYFMTSYLEG----DNFA-ASPYYYNLYYI  196 (232)
Q Consensus       122 ~D~~vv~~E~it~lv~GPL~l~~~~~i~~~~~~r~~l~ivvsv~qLyGtvlYf~te~~~G----~~~~-~n~~yfW~yfV  196 (232)
                      +|++++|+|++|+++|||+|+++++++.+++++||++|+++|++|+|||+|||+||+++|    .+++ +|++|||+|||
T Consensus        84 ~D~~vv~~e~~t~l~~Gpl~l~~~~~i~~~~~~r~~l~i~vs~~qlygtvlyf~~e~~~g~~~~~~~~~~~~ly~W~y~v  163 (194)
T PF05241_consen   84 SDPFVVCMESITVLLEGPLCLLAAYLIAKRSPYRHFLQIVVSVMQLYGTVLYFATEWLEGFVHSPNFSTPEPLYFWFYFV  163 (194)
T ss_pred             CCCcEEeehhHHHHHHhHHHHHHHHHHHhCchHHHHHHHHHHHHhhheeeEEEEEHhhccCcCCccCCCCChhhheeehh
Confidence            999999999999999999999999999999999999999999999999999999999999    3445 89999999999


Q ss_pred             eeCcceeechHHHHHHHHHHHHhhhhhhc
Q 040128          197 GANASWVVIPSLIAIRCWKKICAAPQLQG  225 (232)
Q Consensus       197 ~~N~iWIvvP~~ll~~s~~~i~~a~~~~~  225 (232)
                      +||++||++|++++++|+++|+++++..+
T Consensus       164 ~~N~iWivvP~~~l~~s~~~i~~a~~~~~  192 (194)
T PF05241_consen  164 FPNGIWIVVPLLLLYQSWKEIARAFRAAQ  192 (194)
T ss_pred             hcchHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            99999999999999999999999998876



The EBP protein has emopamil binding domains, including the sterol acceptor site and the catalytic centre, which show Delta8-Delta7 sterol isomerase activity. Human sterol isomerase, a homologue of mouse EBP, is suggested not only to play a role in cholesterol biosynthesis, but also to affect lipoprotein internalisation. In humans, mutations of EBP are known to cause the genetic disorder of X-linked dominant chondrodysplasia punctata (CDPX2). This syndrome of humans is lethal in most males, and affected females display asymmetric hyperkeratotic skin and skeletal abnormalities [].; GO: 0047750 cholestenol delta-isomerase activity, 0016125 sterol metabolic process, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>KOG4826 consensus C-8,7 sterol isomerase [Lipid transport and metabolism] Back     alignment and domain information
>PF10914 DUF2781: Protein of unknown function (DUF2781); InterPro: IPR016964 This group represents a predicted transmembrane protein 97 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00